Psyllid ID: psy11461

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250---
Protein Sequence
MSKSHNFTTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIACQLRIAKKKRWAETEEKRIAQEIELLTYLNRLITEDAEKELGSIRRDAETKRLDGDAVQEAVMRIEARRDRSMAELNDLFVAIDERRRKVGHFDPVTRVKLSADQLIPNFAMKEVVDNFLQENDWAYEY
Secondary Structure (PSIPRED)
cccccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHcccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHcccHHHHHHHHHHHHHccHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHccccHHHccccEccHHHHHHHcccccccccccccHHHcHHHHHHHHHHHHHHHHccccEcc
Coil and Loop (DISEMBL)
mskshnfttnnlsdkelkdegnryfglRQYEEAINCYTRaiiknpvipsyftNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDlsreqnlnygddiACQLRIAKKKRWAETEEKRIAQEIELLTYLNRLITEDAEKELGSirrdaetkrldgDAVQEAVMRIEARRDRSMAELNDLFVAIDErrrkvghfdpvtrvklsadqlipnfaMKEVVDNFLqendwayey
Flexible Loop (DISEMBL)
mskshnfttnnlsdkelkdegNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIACQLRIAKKKRWAETEEKRIAQEIELLTYLNRLITEDAEkelgsirrdaetkrldgdavqEAVMRiearrdrsmaELNDLFvaiderrrkvghfdpvtrvklsadqlipnfAMKEVVDNFLQENDWAYEY
Low Complexity Region (SEG)
MSKSHNFTTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIACQLRIAKKKRWAETEEKRIAQEIELLTYLNRLITEDAEKELGSIRRDAETKRLDGDAVQEAVMRIEARRDRSMAELNDLFVAIDERRRKVGHFDPVTRVKLSADQLIPNFAMKEVVDNFLQENDWAYEY
Disordered region (IsUnstruct)
*********************NRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIACQLRIAKKKRWAETEEKRIAQEIELLTYLNRLITE**************************************AELNDLFVAIDERRRKVGHFDPVTRVKLSADQLIPNFAMKEVVDNFLQENDWAY**
Disordered Region (DISOPRED)
******************DEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNL********************************************************************VMRIEARRDRSMAELNDLFVAIDERRRKVGHFDPVTRVKLSADQLIPNFAMKEVVDNFLQENDWAYEY
Disordered Region (DISEMBL)
*********NNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIACQLRIAKKKRWAETEEKRIAQEIELLTYLNRLITEDAEKELGSIRRDAETKRLDGDAVQEAVMRIEARRDRSMAELNDLFVAIDERRRKVGHFDPVTRVKLSADQLIPNFAMKEVVDNFLQENDWAYEY
Disordered Region (DISPRO)
****HNFTTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIACQLRIAKKKRWAETEEKRIAQEIELLTYLNRLITEDAEKELGSIRRDAETKRLDGDAVQEAVMRIEARRDRSMAELNDLFVAIDERRRKVGHFDPVTRVKLSADQLIPNFAMKEVVDNFLQENDWAYEY
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSKSHNFTTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIACQLRIAKKKRWAETEEKRIAQEIELLTYLNRLITEDAEKELGSIRRDAETKRLDGDAVQEAVMRIEARRDRSMAELNDLFVAIDERRRKVGHFDPVTRVKLSADQLIPNFAMKEVVDNFLQENDWAYEY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	253	2.2.26 [Sep-21-2011]
Q5ZHY5	314	STIP1 homology and U box-	yes	N/A	0.952	0.767	0.457	2e-64
Q9WUD1	304	STIP1 homology and U box-	yes	N/A	0.944	0.786	0.473	3e-62
Q9UNE7	303	E3 ubiquitin-protein liga	yes	N/A	0.944	0.788	0.469	3e-62
Q9SRS9	278	E3 ubiquitin-protein liga	yes	N/A	0.932	0.848	0.326	1e-26
Q80W98	304	Small glutamine-rich tetr	no	N/A	0.446	0.371	0.372	2e-13
Q8VD33	304	Small glutamine-rich tetr	no	N/A	0.446	0.371	0.372	2e-13
Q96EQ0	304	Small glutamine-rich tetr	no	N/A	0.446	0.371	0.372	2e-13
O70593	314	Small glutamine-rich tetr	no	N/A	0.442	0.356	0.367	4e-13
Q8BJU0	315	Small glutamine-rich tetr	no	N/A	0.442	0.355	0.367	5e-13
Q32LM2	313	Small glutamine-rich tetr	no	N/A	0.375	0.303	0.389	4e-12

>sp|Q5ZHY5|CHIP_CHICK STIP1 homology and U box-containing protein 1 OS=Gallus gallus GN=STUB1 PE=2 SV=1

 Score =  245 bits (626), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 128/280 (45%), Positives = 173/280 (61%), Gaps = 39/280 (13%)

Query: 13  SDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCR 72
           S +E K++GNR FG R+Y EA   Y RAI +NP++  Y+TNRALCYLK++Q+     DC+
Sbjct: 35  SAQEHKEQGNRLFGGRKYPEAAAAYGRAINRNPLVAVYYTNRALCYLKMQQHDKALADCK 94

Query: 73  KALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIACQLRIAKK 132
           +ALEL+   VKA FFLGQ   E+ +YDEA+ +LQRAY+L++EQ LN+GDDI   LRIAKK
Sbjct: 95  RALELDGQSVKAHFFLGQCQMEMENYDEAIANLQRAYNLAKEQRLNFGDDIPSALRIAKK 154

Query: 133 KRWAETEEKRIAQEIELLTYLNRLITEDAEKELGSIRRDAETKRLDGDAVQEAVMRIEAR 192
           KRW   EEKRI QE EL +YL RLI  + E+EL   R+  + + +D    +  +  IEA+
Sbjct: 155 KRWNSIEEKRINQENELHSYLTRLIMAEKERELAECRKAQQEENVDESRGRVQLAGIEAK 214

Query: 193 RDRSMAELNDLFVAIDERRRK--------------------------------------- 213
            D+ +A++++LF  +DE+R+K                                       
Sbjct: 215 HDKYLADMDELFSQVDEKRKKRDIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQR 274

Query: 214 VGHFDPVTRVKLSADQLIPNFAMKEVVDNFLQENDWAYEY 253
           VGHFDPVTR  L+ DQLIPN AMKEV+D F+ EN W  +Y
Sbjct: 275 VGHFDPVTRSPLTQDQLIPNLAMKEVIDAFISENGWVEDY 314

E3 ubiquitin-protein ligase which targets misfolded chaperone substrates towards proteasomal degradation. Ubiquitinates NOS1 in concert with Hsp70 and Hsp40. Mediates polyubiquitination of DNA polymerase beta (POLB), thereby playing a role in base-excision repair: catalyzes polyubiquitination by amplifying the HUWE1/ARF-BP1-dependent monoubiquitination and leading to POLB-degradation by the proteasome. Mediates polyubiquitination of CYP3A4. May ubiquitinate EPHA2 and regulate the receptor stability and activity through proteasomal degradation.
Gallus gallus (taxid: 9031)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp|Q9WUD1|CHIP_MOUSE STIP1 homology and U box-containing protein 1 OS=Mus musculus GN=Stub1 PE=1 SV=1

 Score =  238 bits (608), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 133/281 (47%), Positives = 172/281 (61%), Gaps = 42/281 (14%)

Query: 13  SDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCR 72
           S +ELK++GNR F  R+Y EA  CY RAI +NP++  Y+TNRALCYLK++Q      DCR
Sbjct: 26  SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCR 85

Query: 73  KALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIACQLRIAKK 132
           +ALEL+   VKA FFLGQ   E+  YDEA+ +LQRAY L++EQ LN+GDDI   LRIAKK
Sbjct: 86  RALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKK 145

Query: 133 KRWAETEEKRIAQEIELLTYLNRLITEDAEKELGSIRRDAETKRLDGDA-VQEAVMRIEA 191
           KRW   EE+RI QE EL +YL RLI  + E+EL   +R+ E    DG    Q+A   IEA
Sbjct: 146 KRWNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRAQQAC--IEA 203

Query: 192 RRDRSMAELNDLFVAIDERRRK-------------------------------------- 213
           + D+ MA++++LF  +DE+R+K                                      
Sbjct: 204 KHDKYMADMDELFSQVDEKRKKRDIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQ 263

Query: 214 -VGHFDPVTRVKLSADQLIPNFAMKEVVDNFLQENDWAYEY 253
            VGHFDPVTR  L+ +QLIPN AMKEV+D F+ EN W  +Y
Sbjct: 264 RVGHFDPVTRSPLTQEQLIPNLAMKEVIDAFISENGWVEDY 304

E3 ubiquitin-protein ligase which targets misfolded chaperone substrates towards proteasomal degradation. Collaborates with ATXN3 in the degradation of misfolded chaperone substrates: ATXN3 restricting the length of ubiquitin chain attached to STUB1/CHIP substrates and preventing further chain extension. Ubiquitinates NOS1 in concert with Hsp70 and Hsp40. Modulates the activity of several chaperone complexes, including Hsp70, Hsc70 and Hsp90. Mediates transfer of non-canonical short ubiquitin chains to HSPA8 that have no effect on HSPA8 degradation. Mediates polyubiquitination of DNA polymerase beta (POLB) at 'Lys-41', 'Lys-61' and 'Lys-81', thereby playing a role in base-excision repair: catalyzes polyubiquitination by amplifying the HUWE1/ARF-BP1-dependent monoubiquitination and leading to POLB-degradation by the proteasome. Mediates polyubiquitination of CYP3A4. Ubiquitinates EPHA2 and may regulate the receptor stability and activity through proteasomal degradation.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9UNE7|CHIP_HUMAN E3 ubiquitin-protein ligase CHIP OS=Homo sapiens GN=STUB1 PE=1 SV=2

 Score =  238 bits (607), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 132/281 (46%), Positives = 173/281 (61%), Gaps = 42/281 (14%)

Query: 13  SDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCR 72
           S +ELK++GNR F  R+Y EA  CY RAI +NP++  Y+TNRALCYLK++Q+     DCR
Sbjct: 25  SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQHEQALADCR 84

Query: 73  KALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIACQLRIAKK 132
           +ALEL+   VKA FFLGQ   E+  YDEA+ +LQRAY L++EQ LN+GDDI   LRIAKK
Sbjct: 85  RALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKK 144

Query: 133 KRWAETEEKRIAQEIELLTYLNRLITEDAEKELGSIRRDAETKRLDGDA-VQEAVMRIEA 191
           KRW   EE+RI QE EL +YL+RLI  + E+EL   +R+ E    D     Q+A   IEA
Sbjct: 145 KRWNSIEERRIHQESELHSYLSRLIAAERERELEECQRNHEGDEDDSHVRAQQAC--IEA 202

Query: 192 RRDRSMAELNDLFVAIDERRRK-------------------------------------- 213
           + D+ MA++++LF  +DE+R+K                                      
Sbjct: 203 KHDKYMADMDELFSQVDEKRKKRDIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQ 262

Query: 214 -VGHFDPVTRVKLSADQLIPNFAMKEVVDNFLQENDWAYEY 253
            VGHFDPVTR  L+ +QLIPN AMKEV+D F+ EN W  +Y
Sbjct: 263 RVGHFDPVTRSPLTQEQLIPNLAMKEVIDAFISENGWVEDY 303

E3 ubiquitin-protein ligase which targets misfolded chaperone substrates towards proteasomal degradation. Collaborates with ATXN3 in the degradation of misfolded chaperone substrates: ATXN3 restricting the length of ubiquitin chain attached to STUB1/CHIP substrates and preventing further chain extension. Ubiquitinates NOS1 in concert with Hsp70 and Hsp40. Modulates the activity of several chaperone complexes, including Hsp70, Hsc70 and Hsp90. Mediates transfer of non-canonical short ubiquitin chains to HSPA8 that have no effect on HSPA8 degradation. Mediates polyubiquitination of DNA polymerase beta (POLB) at 'Lys-41', 'Lys-61' and 'Lys-81', thereby playing a role in base-excision repair: catalyzes polyubiquitination by amplifying the HUWE1/ARF-BP1-dependent monoubiquitination and leading to POLB-degradation by the proteasome. Mediates polyubiquitination of CYP3A4. Ubiquitinates EPHA2 and may regulate the receptor stability and activity through proteasomal degradation.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9SRS9|CHIP_ARATH E3 ubiquitin-protein ligase CHIP OS=Arabidopsis thaliana GN=CHIP PE=1 SV=1

 Score =  119 bits (299), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 86/263 (32%), Positives = 129/263 (49%), Gaps = 27/263 (10%)

Query: 17  LKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALE 76
           LK++GN  F   ++  AI+ YT AI  +P +P+Y+TNRALC++K K +    +DCRKA++
Sbjct: 13  LKEDGNNCFKKERFGAAIDAYTEAIALSPNVPAYWTNRALCHMKRKDWTKVEEDCRKAIQ 72

Query: 77  LEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLN--YGDDIACQLRIAKKKR 134
           L  + VKA + LG AL +   +   VK LQRA DL R  N      ++I  +L  AK   
Sbjct: 73  LVHNSVKAHYMLGLALLQKKEFTNGVKELQRALDLGRCSNPTGYMVEEIWEELSKAKYME 132

Query: 135 WAETEEKR------IAQEIELLTYLNRLITEDAEKELGSIRRDAETKRLDG------DAV 182
           W      R      + +  E      R +     +E       A T+RL         A 
Sbjct: 133 WELVSAMRSWELNSLKETCEAALNQQRALDMSRTEESSDEAYTAHTERLKALERVFKKAA 192

Query: 183 QE-----------AVMRIEARRDRSMAELNDLF--VAIDERRRKVGHFDPVTRVKLSADQ 229
           +E             + +E  RD  ++     +   AI E  +KVG FDP+TR K+    
Sbjct: 193 EEDKPTEVPDYLCCNITLEIFRDPVISPSGVTYERAAILEHLKKVGKFDPITREKIDPAN 252

Query: 230 LIPNFAMKEVVDNFLQENDWAYE 252
           L+PN A+KE V  +L+++ WAY+
Sbjct: 253 LVPNLAIKEAVAAYLEKHVWAYK 275

Has E3 ubiquitin-protein ligase activity and may target misfolded substrates towards proteasomal degradation. Regulates the activity of some serine/threonine-protein phosphatases by E3 ubiquitin-protein ligase activity. Required for responses to biotic and abiotic stresses such as auxin, abscisic acid (ABA), low and high temperature and darkness, probably through the activation of serine/threonine-protein phosphatase and the subsequent modification of the plasma membrane composition. Regulates the chloroplastic Clp proteolytic activity in response to stresses. Ubiquitylates FtsH1, a component of the chloroplast FtsH protease, and affects protein degradation in chloroplasts. Mediates plastid precursor degradation to prevent cytosolic precursor accumulation, together with the molecular chaperone HSC70-4. Mediates ubiquitination of transit peptides and thereby led to their degradation through the ubiquitin-proteasome system.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q80W98|SGTB_RAT Small glutamine-rich tetratricopeptide repeat-containing protein beta OS=Rattus norvegicus GN=Sgtb PE=1 SV=1

 Score = 76.6 bits (187), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 44/118 (37%), Positives = 62/118 (52%), Gaps = 5/118 (4%)

Query: 16  ELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKAL 75
           +LKDEGN +     Y  A++CYT+AI  +P    Y+ NRA    KL  Y     DC KA+
Sbjct: 87  QLKDEGNNHMKEENYAAAVDCYTQAIELDPNNAVYYCNRAAAQSKLSHYTDAIKDCEKAI 146

Query: 76  ELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIACQLRIAKKK 133
            ++    KA   +G AL  +N ++EAV   Q+A DL  E      D     L+IA++K
Sbjct: 147 AIDSKYSKAYGRMGLALTAMNKFEEAVTSYQKALDLDPEN-----DSYKSNLKIAEQK 199

Co-chaperone that binds directly to HSC70 and HSP70 and regulates their ATPase activity.

Rattus norvegicus (taxid: 10116)

>sp|Q8VD33|SGTB_MOUSE Small glutamine-rich tetratricopeptide repeat-containing protein beta OS=Mus musculus GN=Sgtb PE=2 SV=1

 Score = 76.6 bits (187), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 44/118 (37%), Positives = 62/118 (52%), Gaps = 5/118 (4%)

Query: 16  ELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKAL 75
           +LKDEGN +     Y  A++CYT+AI  +P    Y+ NRA    KL  Y     DC KA+
Sbjct: 87  QLKDEGNNHMKEENYAAAVDCYTQAIELDPNNAVYYCNRAAAQSKLSHYTDAIKDCEKAI 146

Query: 76  ELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIACQLRIAKKK 133
            ++    KA   +G AL  +N ++EAV   Q+A DL  E      D     L+IA++K
Sbjct: 147 AIDSKYSKAYGRMGLALTAMNKFEEAVTSYQKALDLDPEN-----DSYKSNLKIAEQK 199

Co-chaperone that binds directly to HSC70 and HSP70 and regulates their ATPase activity.

Mus musculus (taxid: 10090)

>sp|Q96EQ0|SGTB_HUMAN Small glutamine-rich tetratricopeptide repeat-containing protein beta OS=Homo sapiens GN=SGTB PE=1 SV=1

 Score = 75.9 bits (185), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 44/118 (37%), Positives = 62/118 (52%), Gaps = 5/118 (4%)

Query: 16  ELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKAL 75
           +LKDEGN +     Y  A++CYT+AI  +P    Y+ NRA    KL  Y     DC KA+
Sbjct: 87  QLKDEGNNHMKEENYAAAVDCYTQAIELDPNNAVYYCNRAAAQSKLGHYTDAIKDCEKAI 146

Query: 76  ELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIACQLRIAKKK 133
            ++    KA   +G AL  +N ++EAV   Q+A DL  E      D     L+IA++K
Sbjct: 147 AIDSKYSKAYGRMGLALTALNKFEEAVTSYQKALDLDPEN-----DSYKSNLKIAEQK 199

Co-chaperone that binds directly to HSC70 and HSP70 and regulates their ATPase activity.

Homo sapiens (taxid: 9606)

>sp|O70593|SGTA_RAT Small glutamine-rich tetratricopeptide repeat-containing protein alpha OS=Rattus norvegicus GN=Sgta PE=1 SV=1

 Score = 75.1 bits (183), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 43/117 (36%), Positives = 61/117 (52%), Gaps = 5/117 (4%)

Query: 17  LKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALE 76
           LK EGN    L  +E A++ Y +AI  NP    YF NRA  Y KL  YV    DC +A+ 
Sbjct: 94  LKTEGNEQMKLENFEAAVHLYGKAIELNPANAVYFCNRAAAYSKLGNYVGAVQDCERAIG 153

Query: 77  LEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIACQLRIAKKK 133
           ++P   KA   +G AL  +N + EAV + ++A +L  +      D     L+IA+ K
Sbjct: 154 IDPGYSKAYGRMGLALSSLNKHAEAVAYYKKALELDPDN-----DTYKSNLKIAELK 205

Co-chaperone that binds directly to HSC70 and HSP70 and regulates their ATPase activity.

Rattus norvegicus (taxid: 10116)

>sp|Q8BJU0|SGTA_MOUSE Small glutamine-rich tetratricopeptide repeat-containing protein alpha OS=Mus musculus GN=Sgta PE=1 SV=2

 Score = 74.7 bits (182), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 43/117 (36%), Positives = 61/117 (52%), Gaps = 5/117 (4%)

Query: 17  LKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALE 76
           LK EGN    L  +E A++ Y +AI  NP    YF NRA  Y KL  YV    DC +A+ 
Sbjct: 95  LKTEGNEQMKLENFEAAVHLYGKAIELNPANAVYFCNRAAAYSKLGNYVGAVQDCERAIG 154

Query: 77  LEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIACQLRIAKKK 133
           ++P   KA   +G AL  +N + EAV + ++A +L  +      D     L+IA+ K
Sbjct: 155 IDPGYSKAYGRMGLALSSLNKHAEAVAYYKKALELDPDN-----DTYKSNLKIAELK 206

Co-chaperone that binds directly to HSC70 and HSP70 and regulates their ATPase activity.

Mus musculus (taxid: 10090)

>sp|Q32LM2|SGTA_BOVIN Small glutamine-rich tetratricopeptide repeat-containing protein alpha OS=Bos taurus GN=SGTA PE=2 SV=1

 Score = 71.6 bits (174), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 37/95 (38%), Positives = 53/95 (55%)

Query: 17  LKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALE 76
           LK EGN    +  +E A++ Y +AI  NP    YF NRA  Y KL  Y     DC +A+ 
Sbjct: 94  LKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAIC 153

Query: 77  LEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDL 111
           ++PS  KA   +G AL  +N + EAV + ++A +L
Sbjct: 154 IDPSYSKAYGRMGLALSSLNKHTEAVAYYRKALEL 188

Co-chaperone that binds directly to HSC70 and HSP70 and regulates their ATPase activity.

Bos taurus (taxid: 9913)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	253
242010626	287	STIP1 homology and u box-containing prot	0.980	0.864	0.537	1e-80
91088445	287	PREDICTED: similar to Hsp70-interacting	0.980	0.864	0.530	2e-79
332372726	289	unknown [Dendroctonus ponderosae]	0.980	0.858	0.527	8e-79
157167890	288	Hsp70-interacting protein, putative [Aed	0.984	0.864	0.517	5e-77
58392851	288	AGAP008918-PA [Anopheles gambiae str. PE	0.984	0.864	0.510	6e-77
357624522	283	putative STIP1-like proteiny and u box-c	0.960	0.858	0.513	7e-77
170047754	288	Hsp70-interacting protein [Culex quinque	0.984	0.864	0.503	2e-75
195051158	289	GH13304 [Drosophila grimshawi] gi|193900	0.988	0.865	0.496	3e-75
383854110	298	PREDICTED: STIP1 homology and U box-cont	0.988	0.838	0.515	3e-75
195384912	289	GJ14605 [Drosophila virilis] gi|19414761	0.988	0.865	0.5	4e-75

>gi|242010626|ref|XP_002426063.1| STIP1 homology and u box-containing protein, putative [Pediculus humanus corporis] gi|212510085|gb|EEB13325.1| STIP1 homology and u box-containing protein, putative [Pediculus humanus corporis]

 Score =  305 bits (780), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 157/292 (53%), Positives = 203/292 (69%), Gaps = 44/292 (15%)

Query: 1   MSKSHNFTTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLK 60
           MSK + ++T NL+DKELK++GNR + LR+YE+AINCYT+AIIKNP +P+YFTNRALCYLK
Sbjct: 1   MSK-YTYSTANLTDKELKEQGNRLYSLRKYEDAINCYTKAIIKNPNMPTYFTNRALCYLK 59

Query: 61  LKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNYG 120
           +K++   C DC++AL+++  LVK  FFLGQAL E++ +DEA+KHLQRAYDL++EQ LN+G
Sbjct: 60  MKKWEASCLDCKRALDIDSGLVKGHFFLGQALLEMDSHDEAIKHLQRAYDLAKEQKLNFG 119

Query: 121 DDIACQLRIAKKKRWAETEEKRIAQEIELLTYLNRLITEDAEKELGSIRRDAETKRLDGD 180
           DDI  QLR A+KKRW   EEKRIAQEIEL +YLN+LI +D   ++  ++ +  T  L+  
Sbjct: 120 DDIGSQLRAARKKRWNVQEEKRIAQEIELQSYLNKLIRDDTINQIQKLKLEC-TNELE-- 176

Query: 181 AVQEAVMRIEARRDRSMAELNDLFVAIDERRRK--------------------------- 213
            +QE +M  E R D + +ELN LF  +DERRRK                           
Sbjct: 177 -LQEKIMECERRCDNNTSELNMLFAKVDERRRKRDVPDFLCGKISFEVLREPVITPSGIT 235

Query: 214 ------------VGHFDPVTRVKLSADQLIPNFAMKEVVDNFLQENDWAYEY 253
                       VGHFDPVTRVKL+ DQLIPNFAMKEVVD+FLQEN+WA +Y
Sbjct: 236 YERKDIEEHLQRVGHFDPVTRVKLTQDQLIPNFAMKEVVDSFLQENEWALDY 287

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91088445|ref|XP_968690.1| PREDICTED: similar to Hsp70-interacting protein, putative [Tribolium castaneum] gi|270012210|gb|EFA08658.1| hypothetical protein TcasGA2_TC006323 [Tribolium castaneum]

 Score =  301 bits (770), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 155/292 (53%), Positives = 197/292 (67%), Gaps = 44/292 (15%)

Query: 1   MSKSHNFTTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLK 60
           MSK H ++T NL+DKELK++GNR F LR+YEEAINCY++AIIKNP +P YFTNRALCYLK
Sbjct: 1   MSK-HMYSTANLTDKELKEQGNRLFSLRKYEEAINCYSKAIIKNPDVPHYFTNRALCYLK 59

Query: 61  LKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNYG 120
           L ++   C DCR+AL+++ +LVK  FFLGQAL E  +YDE++KHL RA DL++EQ LN+G
Sbjct: 60  LARWEQACTDCRRALDMDSNLVKGHFFLGQALLETENYDESIKHLMRASDLAKEQKLNFG 119

Query: 121 DDIACQLRIAKKKRWAETEEKRIAQEIELLTYLNRLITEDAEKELGSIRRDAETKRLDGD 180
           DDIA QLR A+KKR++  EEKRIAQEI+LLTYL +LI  D E ++  ++       L+ D
Sbjct: 120 DDIAAQLRAARKKRFSIQEEKRIAQEIDLLTYLTKLIKRDKETQIEDVKNQGFENELEED 179

Query: 181 AVQEAVMRIEARRDRSMAELNDLFVAIDERRRK--------------------------- 213
            ++E    IE + D  + ELN LF+ +DE+RRK                           
Sbjct: 180 KIRE----IEEKCDSHLNELNSLFMKVDEKRRKREVPDYLCGKISFEILQEPVITPSGIT 235

Query: 214 ------------VGHFDPVTRVKLSADQLIPNFAMKEVVDNFLQENDWAYEY 253
                       VGHFDPVTRVKL+ DQLIPNFAMKEVVD FL EN+WA +Y
Sbjct: 236 YDKKDLEEHLQRVGHFDPVTRVKLTQDQLIPNFAMKEVVDAFLAENEWALDY 287

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332372726|gb|AEE61505.1| unknown [Dendroctonus ponderosae]

 Score =  299 bits (765), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 154/292 (52%), Positives = 199/292 (68%), Gaps = 44/292 (15%)

Query: 1   MSKSHNFTTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLK 60
           MSK H ++T NLSD+ELK++GNR + LR+Y++AIN Y++AIIKNP +  YFTNRALCYLK
Sbjct: 3   MSK-HMYSTVNLSDRELKEQGNRLYNLRKYDDAINLYSKAIIKNPDVAHYFTNRALCYLK 61

Query: 61  LKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNYG 120
           L ++ + C DCR+AL+++P+LVK  FFLGQAL E+   DE++KHLQRA DL++EQ LN+G
Sbjct: 62  LLKWENACTDCRRALDMDPNLVKGHFFLGQALFEVGSLDESIKHLQRALDLAKEQKLNFG 121

Query: 121 DDIACQLRIAKKKRWAETEEKRIAQEIELLTYLNRLITEDAEKELGSIRRDAETKRLDGD 180
           DDIA QLR A+KKR++  EEKRI QEIEL  YLNRLI ED E+++ S++ +A    +D D
Sbjct: 122 DDIAAQLRAARKKRFSIQEEKRICQEIELQAYLNRLINEDKERQINSLKNEA----VDSD 177

Query: 181 AVQEAVMRIEARRDRSMAELNDLFVAIDERRRK--------------------------- 213
           +    V+ IE + D  + ELN LF  +DERRRK                           
Sbjct: 178 SKTGKVLEIEEQCDSYVTELNSLFQKVDERRRKREVPDYLCGKISFEILQEPVITPSGIT 237

Query: 214 ------------VGHFDPVTRVKLSADQLIPNFAMKEVVDNFLQENDWAYEY 253
                       VGHFDPVTRVKL+ DQLIPNF+MKEVVD FL EN+WA +Y
Sbjct: 238 YDKKDLEEHLQRVGHFDPVTRVKLTTDQLIPNFSMKEVVDAFLAENEWALDY 289

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157167890|ref|XP_001656145.1| Hsp70-interacting protein, putative [Aedes aegypti] gi|108871011|gb|EAT35236.1| AAEL012588-PA [Aedes aegypti]

 Score =  293 bits (749), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 151/292 (51%), Positives = 195/292 (66%), Gaps = 43/292 (14%)

Query: 1   MSKSHNFTTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLK 60
           MSK H ++T NL+D ELKD+GNR F  R+Y++AIN YT+AIIKNP   +YFTNRALC++K
Sbjct: 1   MSK-HMYSTANLTDVELKDQGNRMFSARKYDDAINLYTKAIIKNPTNATYFTNRALCHIK 59

Query: 61  LKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNYG 120
           +K++   C DCR+AL+++P+LVK  FFLG +L E++ YDEA+KHL RA+DL+REQ LN+G
Sbjct: 60  MKRWESSCTDCRRALDMDPNLVKGHFFLGLSLMELDSYDEAIKHLMRAHDLAREQKLNFG 119

Query: 121 DDIACQLRIAKKKRWAETEEKRIAQEIELLTYLNRLITEDAEKELGSIRRDAETKRLDGD 180
           DDIA QLR+A+KKRW   EEKRI QEIEL +YLNRLI ED E  L  ++ D     L+ D
Sbjct: 120 DDIASQLRLARKKRWNIQEEKRICQEIELQSYLNRLINEDMENRLAKLKLD---DTLNED 176

Query: 181 AVQEAVMRIEARRDRSMAELNDLFVAIDERRRK--------------------------- 213
           AV++  M IE   +    ELN++F  +D+RRRK                           
Sbjct: 177 AVRDKSMEIERECENHTTELNNIFAKVDDRRRKREVPDYLCGKISFELLVDPVITPSGMT 236

Query: 214 ------------VGHFDPVTRVKLSADQLIPNFAMKEVVDNFLQENDWAYEY 253
                       VGHFDPVTRVKL+ DQLI N++MKEVVD FL EN+WA +Y
Sbjct: 237 YERKDIEEHLQRVGHFDPVTRVKLTQDQLIANYSMKEVVDAFLAENEWALDY 288

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|58392851|ref|XP_319666.2| AGAP008918-PA [Anopheles gambiae str. PEST] gi|55235225|gb|EAA14840.2| AGAP008918-PA [Anopheles gambiae str. PEST]

 Score =  293 bits (749), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 149/292 (51%), Positives = 196/292 (67%), Gaps = 43/292 (14%)

Query: 1   MSKSHNFTTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLK 60
           MSK H ++T NLSD ELKD+GNR F  R+Y++A+N YT+AIIKN    +YFTNRALC++K
Sbjct: 1   MSK-HMYSTANLSDVELKDQGNRLFSARKYDDAVNLYTKAIIKNSTNATYFTNRALCHIK 59

Query: 61  LKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNYG 120
           +K++   C DCR+AL+++P+LVK  FFLG +L E+  +DEA+KHLQRA+DL++EQ LN+G
Sbjct: 60  MKRWETACVDCRRALDMDPNLVKGHFFLGLSLMELESFDEAIKHLQRAHDLAKEQKLNFG 119

Query: 121 DDIACQLRIAKKKRWAETEEKRIAQEIELLTYLNRLITEDAEKELGSIRRDAETKRLDGD 180
           DDIA QLR+A+KKRW   EEKRI QEIEL +YLNRLITED E  +  ++ D     ++ +
Sbjct: 120 DDIASQLRLARKKRWNIQEEKRICQEIELQSYLNRLITEDMENRMAKLKVD---DTINEE 176

Query: 181 AVQEAVMRIEARRDRSMAELNDLFVAIDERRRK--------------------------- 213
            ++E  M IE   +  M ELN+LF  +D+RRRK                           
Sbjct: 177 TLKEKAMEIEREGENHMTELNNLFAKVDDRRRKREVPDYLCGKISFELLVDPVITPSGMT 236

Query: 214 ------------VGHFDPVTRVKLSADQLIPNFAMKEVVDNFLQENDWAYEY 253
                       VGHFDPVTRVKL+ DQLI N++MKEVVD FLQEN+WA +Y
Sbjct: 237 YERKDIEEHLQRVGHFDPVTRVKLTQDQLISNYSMKEVVDAFLQENEWALDY 288

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357624522|gb|EHJ75264.1| putative STIP1-like proteiny and u box-containing protein [Danaus plexippus]

 Score =  293 bits (749), Expect = 7e-77,   Method: Compositional matrix adjust.
 Identities = 147/286 (51%), Positives = 196/286 (68%), Gaps = 43/286 (15%)

Query: 7   FTTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVH 66
           ++T NL+DKELK++GNR F LR++E+A+NCYT+AIIKNP + +YFTNRALC+LK+K++  
Sbjct: 2   YSTANLTDKELKEQGNRLFSLRRFEDAMNCYTKAIIKNPSVATYFTNRALCHLKMKRWEA 61

Query: 67  CCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIACQ 126
            C DCR+AL+++ + VK  FFLGQAL E++ YDEA+KHL RA DL+R+Q LN+GDDIA Q
Sbjct: 62  TCQDCRRALDIDNNQVKGHFFLGQALVELDCYDEAIKHLHRANDLARDQKLNFGDDIAAQ 121

Query: 127 LRIAKKKRWAETEEKRIAQEIELLTYLNRLITEDAEKELGSIRRDAETKRLDGDAVQEAV 186
           +RIA+KKRW   EEKRI+QEIEL TYLNRLI ED ++ + SI+     + ++ +     +
Sbjct: 122 IRIARKKRWNVQEEKRISQEIELQTYLNRLINEDMQRRVESIK----IENINEEDTNSKI 177

Query: 187 MRIEARRDRSMAELNDLFVAIDERRRK--------------------------------- 213
            ++E   +   +ELN+LF  +DERRRK                                 
Sbjct: 178 AKVEEECNNYSSELNNLFSKMDERRRKRDVPDYLCGKISFEILNEPVITPSGITYEKKDI 237

Query: 214 ------VGHFDPVTRVKLSADQLIPNFAMKEVVDNFLQENDWAYEY 253
                 VGHFDPVTRVKL+ADQLIPNF MKEVVD FLQ+N+WA +Y
Sbjct: 238 EEHLERVGHFDPVTRVKLTADQLIPNFTMKEVVDAFLQDNEWALDY 283

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170047754|ref|XP_001851375.1| Hsp70-interacting protein [Culex quinquefasciatus] gi|167870062|gb|EDS33445.1| Hsp70-interacting protein [Culex quinquefasciatus]

 Score =  288 bits (736), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 147/292 (50%), Positives = 194/292 (66%), Gaps = 43/292 (14%)

Query: 1   MSKSHNFTTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLK 60
           MSK H ++T NL+D ELKD+GNR F  R+YE+AIN YT+AIIKNP   +YFTNRALC++K
Sbjct: 1   MSK-HMYSTANLTDVELKDQGNRMFSARKYEDAINLYTKAIIKNPTNATYFTNRALCHIK 59

Query: 61  LKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNYG 120
           +K++   C DCR+AL+++P+LVK  FFLG +L E++ +DEA+KHL RA+DL++EQ LN+G
Sbjct: 60  MKRWDSSCTDCRRALDMDPNLVKGHFFLGLSLMELDSFDEAIKHLMRAHDLAKEQKLNFG 119

Query: 121 DDIACQLRIAKKKRWAETEEKRIAQEIELLTYLNRLITEDAEKELGSIRRDAETKRLDGD 180
           DDIA QLR+A+KKRW   EEKRI QEIEL +YLNRLI ED E  +  ++ D     L+ D
Sbjct: 120 DDIASQLRLARKKRWNIQEEKRICQEIELQSYLNRLINEDMENRIAKLKLD---DTLNED 176

Query: 181 AVQEAVMRIEARRDRSMAELNDLFVAIDERRRK--------------------------- 213
           A ++    IE+  +    ELN++F  +DE+RRK                           
Sbjct: 177 AFKDKSQEIESECENHTIELNNIFAKVDEKRRKREVPDYLCGKISFELLVDPVITPSGMT 236

Query: 214 ------------VGHFDPVTRVKLSADQLIPNFAMKEVVDNFLQENDWAYEY 253
                       VGHFDPVTRVKL+ DQLI N++MKEVVD FL EN+WA +Y
Sbjct: 237 YERKDIEEHLQRVGHFDPVTRVKLTQDQLISNYSMKEVVDAFLSENEWALDY 288

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195051158|ref|XP_001993044.1| GH13304 [Drosophila grimshawi] gi|193900103|gb|EDV98969.1| GH13304 [Drosophila grimshawi]

 Score =  287 bits (735), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 145/292 (49%), Positives = 194/292 (66%), Gaps = 42/292 (14%)

Query: 1   MSKSHNFTTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLK 60
           M+  H ++T NLSD +LK++GN  F  R+Y++AI CY++AIIKNP   +YFTNRALC LK
Sbjct: 1   MTSKHIYSTTNLSDLQLKEQGNCLFATRKYDDAIICYSKAIIKNPTNATYFTNRALCNLK 60

Query: 61  LKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNYG 120
           LK++  CC DCR+AL+++ +L+K  FFLGQ L EI++YDEA+KHLQRAYDLS+EQ  N+G
Sbjct: 61  LKRWELCCQDCRRALDIDGNLLKGHFFLGQGLMEIDNYDEAIKHLQRAYDLSKEQKQNFG 120

Query: 121 DDIACQLRIAKKKRWAETEEKRIAQEIELLTYLNRLITEDAEKELGSIRRDAETKRLDGD 180
           DDI  QLR+A+KKRW   EEKRI QEIEL +YLNRL+ +D E  L  ++ +   + L+ D
Sbjct: 121 DDITLQLRLARKKRWNVMEEKRILQEIELQSYLNRLVKDDMENRLAQLKLN---ENLNED 177

Query: 181 AVQEAVMRIEARRDRSMAELNDLFVAIDERRRK--------------------------- 213
            +++    IE   D  + ELN++F  +DERRRK                           
Sbjct: 178 HLKDKQQEIEQECDDHIKELNNIFAKVDERRRKRDVPDFLCGKISFEILTDPVITPSGIT 237

Query: 214 ------------VGHFDPVTRVKLSADQLIPNFAMKEVVDNFLQENDWAYEY 253
                       VGHFDPVTRVKL+ DQLIPNF+MKEVVD+F+ EN+W+ +Y
Sbjct: 238 YERKDIEEHLQRVGHFDPVTRVKLTQDQLIPNFSMKEVVDSFIAENEWSLDY 289

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383854110|ref|XP_003702565.1| PREDICTED: STIP1 homology and U box-containing protein 1-like [Megachile rotundata]

 Score =  287 bits (734), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 153/297 (51%), Positives = 189/297 (63%), Gaps = 47/297 (15%)

Query: 4   SHNFTTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQ 63
           S  +TT NLSDKELK++GNR F L +YE+A  CYT+AIIKNP    YFTNRALC LKLK+
Sbjct: 2   SKMYTTANLSDKELKEQGNRLFNLHKYEDAAYCYTKAIIKNPTQALYFTNRALCNLKLKR 61

Query: 64  YVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNYGDDI 123
           +   C DCR+AL+++P LVK  FFLG AL E+  + EAVKHLQRA DL++EQ LNYGDD+
Sbjct: 62  WESSCQDCRRALDIDPCLVKGHFFLGLALLEMELFGEAVKHLQRAVDLAKEQKLNYGDDM 121

Query: 124 ACQLRIAKKKRWAETEEKRIAQEIELLTYLNRLITEDAEKELGSIRRDAETKRLDGDAVQ 183
              LR A+K+ +   EE+RIAQ+IEL +YLN+LI EDAE+ L +++    TK  +G +  
Sbjct: 122 TSILRQARKRLFQLREEQRIAQDIELQSYLNQLIVEDAERSLAALKEQETTKETNGKSEG 181

Query: 184 EAVM--------RIEARRDRSMAELNDLFVAIDERRRK---------------------- 213
           E V          IE +RD  MA+LNDLF  +DERRRK                      
Sbjct: 182 EGVSNEFTRKKEEIEEKRDTCMAQLNDLFAKVDERRRKREVPDYLCGKISFEILQEPVIT 241

Query: 214 -----------------VGHFDPVTRVKLSADQLIPNFAMKEVVDNFLQENDWAYEY 253
                            VGHFDPVTRV+L+ DQLIPN AMKEVVD FLQEN+WA  Y
Sbjct: 242 PSGITYERKDIEEHLQRVGHFDPVTRVRLTQDQLIPNLAMKEVVDTFLQENEWALYY 298

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195384912|ref|XP_002051156.1| GJ14605 [Drosophila virilis] gi|194147613|gb|EDW63311.1| GJ14605 [Drosophila virilis]

 Score =  286 bits (733), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 146/292 (50%), Positives = 195/292 (66%), Gaps = 42/292 (14%)

Query: 1   MSKSHNFTTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLK 60
           M+  H ++T NLSD +LK++GN  F  R+YE+AI CY++AIIKNP   +YFTNRALC LK
Sbjct: 1   MTSKHIYSTTNLSDLQLKEQGNCLFAARKYEDAIICYSKAIIKNPTNATYFTNRALCNLK 60

Query: 61  LKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNYG 120
           LK++  CC DCR+AL+++ +L+K  FFLGQ L EI++YDEA+KHLQRAYDLS+EQ  N+G
Sbjct: 61  LKRWELCCQDCRRALDIDGNLLKGHFFLGQGLMEIDNYDEAIKHLQRAYDLSKEQKQNFG 120

Query: 121 DDIACQLRIAKKKRWAETEEKRIAQEIELLTYLNRLITEDAEKELGSIRRDAETKRLDGD 180
           DDI  QLR+A+KKRW   EEKRI QEIEL +YLNRLI +D E  L S++ +   + L+ +
Sbjct: 121 DDITLQLRLARKKRWNVLEEKRIHQEIELQSYLNRLIKDDMENRLASLKLN---ENLNEE 177

Query: 181 AVQEAVMRIEARRDRSMAELNDLFVAIDERRRK--------------------------- 213
            +++    IE   D  + ELN++F  +DERRRK                           
Sbjct: 178 HLKDKQQEIEQECDDHIQELNNIFAKVDERRRKRDVPDFLCGKISFEILTDPVITPSGIT 237

Query: 214 ------------VGHFDPVTRVKLSADQLIPNFAMKEVVDNFLQENDWAYEY 253
                       VGHFDPVTRVKL+ DQLIPNF+MKEVVD+F+ +N+W+ +Y
Sbjct: 238 YERKDIEEHLQRVGHFDPVTRVKLTQDQLIPNFSMKEVVDSFIADNEWSLDY 289

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	253
FB|FBgn0027052	289	CHIP "CHIP" [Drosophila melano	0.830	0.726	0.521	3.7e-74
UNIPROTKB|F1RG35	303	STUB1 "Uncharacterized protein	0.786	0.656	0.524	1.6e-65
RGD|1306167	304	Stub1 "STIP1 homology and U-bo	0.786	0.654	0.534	1.6e-65
UNIPROTKB|Q9UNE7	303	STUB1 "E3 ubiquitin-protein li	0.786	0.656	0.524	4.2e-65
MGI|MGI:1891731	304	Stub1 "STIP1 homology and U-Bo	0.786	0.654	0.529	5.4e-65
UNIPROTKB|Q5ZHY5	314	STUB1 "STIP1 homology and U bo	0.794	0.640	0.502	6.8e-65
ZFIN|ZDB-GENE-030131-2963	287	stub1 "STIP1 homology and U-Bo	0.822	0.724	0.460	2.3e-64
UNIPROTKB|E1B7G3	319	STUB1 "Uncharacterized protein	0.786	0.623	0.519	7.7e-64
UNIPROTKB|F1MUH4	302	STUB1 "Uncharacterized protein	0.786	0.658	0.519	7.7e-64
UNIPROTKB|F1P105	251	STUB1 "STIP1 homology and U bo	0.675	0.681	0.485	4.8e-54

FB|FBgn0027052 CHIP "CHIP" [Drosophila melanogaster (taxid:7227)]

 Score = 582 (209.9 bits), Expect = 3.7e-74, Sum P(2) = 3.7e-74
 Identities = 111/213 (52%), Positives = 154/213 (72%)

Query:     1 MSKSHNFTTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLK 60
             M+  H ++T NLSD +LK++GN  F  R+Y++AINCY++AIIKNP   +YFTNRALC LK
Sbjct:     1 MTTKHIYSTTNLSDLQLKEQGNCLFAARKYDDAINCYSKAIIKNPTNATYFTNRALCNLK 60

Query:    61 LKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNYG 120
             LK++  CC D R+AL+++ +L+K  FFLGQ L EI+++DEA+KHLQRAYDLS+EQ  N+G
Sbjct:    61 LKRWELCCQDSRRALDIDGNLLKGHFFLGQGLMEIDNFDEAIKHLQRAYDLSKEQKQNFG 120

Query:   121 DDIACQLRIAKKKRWAETEEKRIAQEIELLTYLNRLITEDAEKELGSIRRDAETKRLDGD 180
             DDI  QLR+A+KKRW   EEKRI QEIEL +YLN LI  D E  L +++ +     +  +
Sbjct:   121 DDITLQLRLARKKRWNVMEEKRIQQEIELQSYLNGLIKGDMESRLANLKLNGN---VHDE 177

Query:   181 AVQEAVMRIEARRDRSMAELNDLFVAIDERRRK 213
              +++    IE   D  + ELN++F  +DERR+K
Sbjct:   178 QLKDKQQEIEQECDDHIKELNNIFSKVDERRKK 210

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0030018 "Z disc" evidence=IDA

UNIPROTKB|F1RG35 STUB1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 527 (190.6 bits), Expect = 1.6e-65, Sum P(2) = 1.6e-65
 Identities = 106/202 (52%), Positives = 144/202 (71%)

Query:    13 SDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCR 72
             S +ELK++GNR F  R+Y EA  CY RAI +NP++  Y+TNRALCYLK++Q+     DCR
Sbjct:    25 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQHEQALADCR 84

Query:    73 KALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIACQLRIAKK 132
             +ALEL+   VKA FFLGQ   E+  YDEA+ +LQRAY+L++EQ LN+GDDI   LRIAKK
Sbjct:    85 RALELDSQSVKAHFFLGQCQLEMESYDEAIANLQRAYNLAKEQRLNFGDDIPSALRIAKK 144

Query:   133 KRWAETEEKRIAQEIELLTYLNRLITEDAEKELGSIRRDAETKRLDGDA-VQEAVMRIEA 191
             KRW   EE+RI QE EL +YL RLI  + E+EL   +R+ E +  DG    Q+A   IEA
Sbjct:   145 KRWNSIEERRIHQENELHSYLTRLIVAERERELEECQRNHEGEEDDGHIRAQQAC--IEA 202

Query:   192 RRDRSMAELNDLFVAIDERRRK 213
             + D+ +A++++LF  +DE+R+K
Sbjct:   203 KHDKYLADMDELFSQVDEKRKK 224

GO:0090035 "positive regulation of chaperone-mediated protein complex assembly" evidence=IEA

GO:0071218 "cellular response to misfolded protein" evidence=IEA

GO:0070534 "protein K63-linked ubiquitination" evidence=IEA

GO:0051879 "Hsp90 protein binding" evidence=IEA

GO:0051865 "protein autoubiquitination" evidence=IEA

GO:0051787 "misfolded protein binding" evidence=IEA

GO:0046332 "SMAD binding" evidence=IEA

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0042405 "nuclear inclusion body" evidence=IEA

GO:0034450 "ubiquitin-ubiquitin ligase activity" evidence=IEA

GO:0032436 "positive regulation of proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0031943 "regulation of glucocorticoid metabolic process" evidence=IEA

GO:0031625 "ubiquitin protein ligase binding" evidence=IEA

GO:0031398 "positive regulation of protein ubiquitination" evidence=IEA

GO:0030911 "TPR domain binding" evidence=IEA

GO:0030579 "ubiquitin-dependent SMAD protein catabolic process" evidence=IEA

GO:0030544 "Hsp70 protein binding" evidence=IEA

GO:0019900 "kinase binding" evidence=IEA

GO:0006515 "misfolded or incompletely synthesized protein catabolic process" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0000151 "ubiquitin ligase complex" evidence=IEA

RGD|1306167 Stub1 "STIP1 homology and U-box containing protein 1, E3 ubiquitin protein ligase" [Rattus norvegicus (taxid:10116)]

 Score = 527 (190.6 bits), Expect = 1.6e-65, Sum P(2) = 1.6e-65
 Identities = 108/202 (53%), Positives = 141/202 (69%)

Query:    13 SDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCR 72
             S +ELK++GNR F  R+Y EA  CY RAI +NP++  Y+TNRALCYLK++Q      DCR
Sbjct:    26 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCR 85

Query:    73 KALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIACQLRIAKK 132
             +ALEL+   VKA FFLGQ   E+  YDEA+ +LQRAY L++EQ LN+GDDI   LRIAKK
Sbjct:    86 RALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKK 145

Query:   133 KRWAETEEKRIAQEIELLTYLNRLITEDAEKELGSIRRDAETKRLDGDA-VQEAVMRIEA 191
             KRW   EE+RI QE EL +YL RLI  + E+EL   +R+ E    DG    Q+A   IEA
Sbjct:   146 KRWNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGDEDDGHIRAQQAC--IEA 203

Query:   192 RRDRSMAELNDLFVAIDERRRK 213
             + D+ MA++N+LF  +DE+R+K
Sbjct:   204 KHDKYMADMNELFSQVDEKRKK 225

GO:0000151 "ubiquitin ligase complex" evidence=IEA;ISO

GO:0000209 "protein polyubiquitination" evidence=ISO

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IEA;ISO

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=ISO

GO:0006515 "misfolded or incompletely synthesized protein catabolic process" evidence=IEA;ISO

GO:0019899 "enzyme binding" evidence=ISO

GO:0019900 "kinase binding" evidence=IEA;ISO

GO:0030544 "Hsp70 protein binding" evidence=IEA;ISO

GO:0030579 "ubiquitin-dependent SMAD protein catabolic process" evidence=IEA;ISO

GO:0030911 "TPR domain binding" evidence=IEA;ISO

GO:0031398 "positive regulation of protein ubiquitination" evidence=IEA;ISO

GO:0031625 "ubiquitin protein ligase binding" evidence=IEA;ISO

GO:0031943 "regulation of glucocorticoid metabolic process" evidence=IEA;ISO

GO:0032436 "positive regulation of proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA;ISO

GO:0034450 "ubiquitin-ubiquitin ligase activity" evidence=IEA;ISO

GO:0042405 "nuclear inclusion body" evidence=IEA;ISO

GO:0042803 "protein homodimerization activity" evidence=IEA;ISO

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA;ISO

GO:0046332 "SMAD binding" evidence=IEA;ISO

GO:0051787 "misfolded protein binding" evidence=IEA;ISO

GO:0051865 "protein autoubiquitination" evidence=IEA;ISO

GO:0051879 "Hsp90 protein binding" evidence=IEA;ISO

GO:0070534 "protein K63-linked ubiquitination" evidence=IEA;ISO

GO:0071218 "cellular response to misfolded protein" evidence=IEA;ISO

GO:0090035 "positive regulation of chaperone-mediated protein complex assembly" evidence=IEA;ISO

UNIPROTKB|Q9UNE7 STUB1 "E3 ubiquitin-protein ligase CHIP" [Homo sapiens (taxid:9606)]

 Score = 523 (189.2 bits), Expect = 4.2e-65, Sum P(2) = 4.2e-65
 Identities = 106/202 (52%), Positives = 142/202 (70%)

Query:    13 SDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCR 72
             S +ELK++GNR F  R+Y EA  CY RAI +NP++  Y+TNRALCYLK++Q+     DCR
Sbjct:    25 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQHEQALADCR 84

Query:    73 KALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIACQLRIAKK 132
             +ALEL+   VKA FFLGQ   E+  YDEA+ +LQRAY L++EQ LN+GDDI   LRIAKK
Sbjct:    85 RALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKK 144

Query:   133 KRWAETEEKRIAQEIELLTYLNRLITEDAEKELGSIRRDAETKRLDGDA-VQEAVMRIEA 191
             KRW   EE+RI QE EL +YL+RLI  + E+EL   +R+ E    D     Q+A   IEA
Sbjct:   145 KRWNSIEERRIHQESELHSYLSRLIAAERERELEECQRNHEGDEDDSHVRAQQAC--IEA 202

Query:   192 RRDRSMAELNDLFVAIDERRRK 213
             + D+ MA++++LF  +DE+R+K
Sbjct:   203 KHDKYMADMDELFSQVDEKRKK 224

GO:0006281 "DNA repair" evidence=IEA

GO:0031625 "ubiquitin protein ligase binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA;IMP;TAS

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IMP

GO:0000209 "protein polyubiquitination" evidence=IDA;IMP

GO:0051865 "protein autoubiquitination" evidence=IDA

GO:0042803 "protein homodimerization activity" evidence=ISS

GO:0034450 "ubiquitin-ubiquitin ligase activity" evidence=ISS

GO:0070534 "protein K63-linked ubiquitination" evidence=IDA

GO:0000151 "ubiquitin ligase complex" evidence=IDA

GO:0019899 "enzyme binding" evidence=IPI

GO:0051879 "Hsp90 protein binding" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0030544 "Hsp70 protein binding" evidence=IDA

GO:0031398 "positive regulation of protein ubiquitination" evidence=IDA

GO:0031943 "regulation of glucocorticoid metabolic process" evidence=IDA

GO:0032436 "positive regulation of proteasomal ubiquitin-dependent protein catabolic process" evidence=IDA

GO:0030911 "TPR domain binding" evidence=IDA

GO:0030674 "protein binding, bridging" evidence=TAS

GO:0051604 "protein maturation" evidence=TAS

GO:0031371 "ubiquitin conjugating enzyme complex" evidence=TAS

GO:0030579 "ubiquitin-dependent SMAD protein catabolic process" evidence=IDA

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=IDA

GO:0046332 "SMAD binding" evidence=IDA

GO:0005829 "cytosol" evidence=TAS

GO:0007179 "transforming growth factor beta receptor signaling pathway" evidence=TAS

GO:0030512 "negative regulation of transforming growth factor beta receptor signaling pathway" evidence=TAS

GO:0042405 "nuclear inclusion body" evidence=IDA

GO:0051787 "misfolded protein binding" evidence=IDA

GO:0071218 "cellular response to misfolded protein" evidence=IDA

GO:0006515 "misfolded or incompletely synthesized protein catabolic process" evidence=IDA

GO:0090035 "positive regulation of chaperone-mediated protein complex assembly" evidence=IDA

GO:0019900 "kinase binding" evidence=IPI

MGI|MGI:1891731 Stub1 "STIP1 homology and U-Box containing protein 1" [Mus musculus (taxid:10090)]

 Score = 522 (188.8 bits), Expect = 5.4e-65, Sum P(2) = 5.4e-65
 Identities = 107/202 (52%), Positives = 141/202 (69%)

Query:    13 SDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCR 72
             S +ELK++GNR F  R+Y EA  CY RAI +NP++  Y+TNRALCYLK++Q      DCR
Sbjct:    26 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCR 85

Query:    73 KALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIACQLRIAKK 132
             +ALEL+   VKA FFLGQ   E+  YDEA+ +LQRAY L++EQ LN+GDDI   LRIAKK
Sbjct:    86 RALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKK 145

Query:   133 KRWAETEEKRIAQEIELLTYLNRLITEDAEKELGSIRRDAETKRLDGDA-VQEAVMRIEA 191
             KRW   EE+RI QE EL +YL RLI  + E+EL   +R+ E    DG    Q+A   IEA
Sbjct:   146 KRWNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRAQQAC--IEA 203

Query:   192 RRDRSMAELNDLFVAIDERRRK 213
             + D+ MA++++LF  +DE+R+K
Sbjct:   204 KHDKYMADMDELFSQVDEKRKK 225

GO:0000151 "ubiquitin ligase complex" evidence=ISO

GO:0000209 "protein polyubiquitination" evidence=ISO;IDA

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISO;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=ISO;ISS

GO:0006281 "DNA repair" evidence=IEA

GO:0006457 "protein folding" evidence=TAS

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=ISO

GO:0006515 "misfolded or incompletely synthesized protein catabolic process" evidence=ISO;IMP

GO:0006974 "response to DNA damage stimulus" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=TAS

GO:0016874 "ligase activity" evidence=IEA

GO:0019899 "enzyme binding" evidence=ISO

GO:0019900 "kinase binding" evidence=ISO

GO:0030544 "Hsp70 protein binding" evidence=ISO;ISS;TAS

GO:0030579 "ubiquitin-dependent SMAD protein catabolic process" evidence=ISO

GO:0030674 "protein binding, bridging" evidence=TAS

GO:0030911 "TPR domain binding" evidence=ISO;ISS

GO:0031072 "heat shock protein binding" evidence=TAS

GO:0031371 "ubiquitin conjugating enzyme complex" evidence=TAS

GO:0031398 "positive regulation of protein ubiquitination" evidence=ISO;ISS

GO:0031625 "ubiquitin protein ligase binding" evidence=IPI

GO:0031943 "regulation of glucocorticoid metabolic process" evidence=ISO;ISS

GO:0032436 "positive regulation of proteasomal ubiquitin-dependent protein catabolic process" evidence=ISO;ISS

GO:0034450 "ubiquitin-ubiquitin ligase activity" evidence=IDA

GO:0042405 "nuclear inclusion body" evidence=ISO

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=ISO;IMP

GO:0046332 "SMAD binding" evidence=ISO

GO:0051604 "protein maturation" evidence=TAS

GO:0051787 "misfolded protein binding" evidence=ISO

GO:0051865 "protein autoubiquitination" evidence=ISO

GO:0051879 "Hsp90 protein binding" evidence=ISO;ISS

GO:0070534 "protein K63-linked ubiquitination" evidence=ISO

GO:0071218 "cellular response to misfolded protein" evidence=ISO;IMP

GO:0090035 "positive regulation of chaperone-mediated protein complex assembly" evidence=ISO

UNIPROTKB|Q5ZHY5 STUB1 "STIP1 homology and U box-containing protein 1" [Gallus gallus (taxid:9031)]

 Score = 517 (187.1 bits), Expect = 6.8e-65, Sum P(2) = 6.8e-65
 Identities = 101/201 (50%), Positives = 142/201 (70%)

Query:    13 SDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCR 72
             S +E K++GNR FG R+Y EA   Y RAI +NP++  Y+TNRALCYLK++Q+     DC+
Sbjct:    35 SAQEHKEQGNRLFGGRKYPEAAAAYGRAINRNPLVAVYYTNRALCYLKMQQHDKALADCK 94

Query:    73 KALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIACQLRIAKK 132
             +ALEL+   VKA FFLGQ   E+ +YDEA+ +LQRAY+L++EQ LN+GDDI   LRIAKK
Sbjct:    95 RALELDGQSVKAHFFLGQCQMEMENYDEAIANLQRAYNLAKEQRLNFGDDIPSALRIAKK 154

Query:   133 KRWAETEEKRIAQEIELLTYLNRLITEDAEKELGSIRRDAETKRLDGDAVQEAVMRIEAR 192
             KRW   EEKRI QE EL +YL RLI  + E+EL   R+  + + +D    +  +  IEA+
Sbjct:   155 KRWNSIEEKRINQENELHSYLTRLIMAEKERELAECRKAQQEENVDESRGRVQLAGIEAK 214

Query:   193 RDRSMAELNDLFVAIDERRRK 213
              D+ +A++++LF  +DE+R+K
Sbjct:   215 HDKYLADMDELFSQVDEKRKK 235

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0006281 "DNA repair" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006515 "misfolded or incompletely synthesized protein catabolic process" evidence=ISS

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=ISS

GO:0071218 "cellular response to misfolded protein" evidence=ISS

GO:0042803 "protein homodimerization activity" evidence=ISS

GO:0034450 "ubiquitin-ubiquitin ligase activity" evidence=ISS

GO:0000209 "protein polyubiquitination" evidence=ISS

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=ISS

ZFIN|ZDB-GENE-030131-2963 stub1 "STIP1 homology and U-Box containing protein 1" [Danio rerio (taxid:7955)]

 Score = 507 (183.5 bits), Expect = 2.3e-64, Sum P(2) = 2.3e-64
 Identities = 98/213 (46%), Positives = 148/213 (69%)

Query:     1 MSKSHNFTTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLK 60
             M K  +    + S +ELK++GNR F  R+Y+EA+ CY++AI +NP +  Y+TNRALCY+K
Sbjct:     1 MEKMASSPEKSSSAQELKEQGNRLFLSRKYQEAVTCYSKAINRNPSVAVYYTNRALCYVK 60

Query:    61 LKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNYG 120
             L+QY     DC+ ALEL+   VKA FFLGQ   E+ +Y+EA+ +LQRAY+L++EQ LN+G
Sbjct:    61 LQQYDKALADCKHALELDSQSVKAHFFLGQCQLELENYEEAIGNLQRAYNLAKEQRLNFG 120

Query:   121 DDIACQLRIAKKKRWAETEEKRIAQEIELLTYLNRLITEDAEKELGSIRRDAETKRLDGD 180
             DDI   LRIAKKKRW   EEKRI+QE EL  YL++LI  + E+EL    + ++  +  GD
Sbjct:   121 DDIPSALRIAKKKRWNSIEEKRISQENELHAYLSKLILAEKERELDDRVKQSDDSQNGGD 180

Query:   181 AVQEAVMRIEARRDRSMAELNDLFVAIDERRRK 213
                  + +++++ D+ + ++++LF  +DE+R+K
Sbjct:   181 -----ISKMKSKHDKYLMDMDELFSQVDEKRKK 208

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0000209 "protein polyubiquitination" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0032436 "positive regulation of proteasomal ubiquitin-dependent protein catabolic process" evidence=ISS

GO:0030544 "Hsp70 protein binding" evidence=ISS

GO:0030911 "TPR domain binding" evidence=ISS

GO:0031398 "positive regulation of protein ubiquitination" evidence=ISS

GO:0046332 "SMAD binding" evidence=ISS

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=ISS

GO:0051879 "Hsp90 protein binding" evidence=ISS

GO:0030579 "ubiquitin-dependent SMAD protein catabolic process" evidence=ISS

GO:0031943 "regulation of glucocorticoid metabolic process" evidence=ISS

UNIPROTKB|E1B7G3 STUB1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 518 (187.4 bits), Expect = 7.7e-64, Sum P(2) = 7.7e-64
 Identities = 105/202 (51%), Positives = 142/202 (70%)

Query:    13 SDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCR 72
             S +ELK++GNR F  R+Y EA  CY RAI +NP++  Y+TNRALCYLK++Q+     DCR
Sbjct:    25 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQHEQALADCR 84

Query:    73 KALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIACQLRIAKK 132
             +ALEL+   VKA FFLGQ   E+  YDEA+ +LQRAY+L++EQ LN+GDDI   LRIAKK
Sbjct:    85 RALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYNLAKEQRLNFGDDIPSALRIAKK 144

Query:   133 KRWAETEEKRIAQEIELLTYLNRLITEDAEKELGSIRRDAETKRLDGDA-VQEAVMRIEA 191
             KRW   EE+RI QE EL +YL RLI  + E+EL   +R+ E    D     Q+A   IEA
Sbjct:   145 KRWNSIEERRIHQENELHSYLTRLIVAERERELEECQRNHEGDEDDSHIRAQQAC--IEA 202

Query:   192 RRDRSMAELNDLFVAIDERRRK 213
             + D+ +A++++LF  +DE+R+K
Sbjct:   203 KHDKYLADMDELFSQVDEKRKK 224

GO:0090035 "positive regulation of chaperone-mediated protein complex assembly" evidence=IEA

GO:0071218 "cellular response to misfolded protein" evidence=IEA

GO:0070534 "protein K63-linked ubiquitination" evidence=IEA

GO:0051879 "Hsp90 protein binding" evidence=IEA

GO:0051865 "protein autoubiquitination" evidence=IEA

GO:0051787 "misfolded protein binding" evidence=IEA

GO:0046332 "SMAD binding" evidence=IEA

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0042405 "nuclear inclusion body" evidence=IEA

GO:0034450 "ubiquitin-ubiquitin ligase activity" evidence=IEA

GO:0032436 "positive regulation of proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0031943 "regulation of glucocorticoid metabolic process" evidence=IEA

GO:0031625 "ubiquitin protein ligase binding" evidence=IEA

GO:0031398 "positive regulation of protein ubiquitination" evidence=IEA

GO:0030911 "TPR domain binding" evidence=IEA

GO:0030579 "ubiquitin-dependent SMAD protein catabolic process" evidence=IEA

GO:0030544 "Hsp70 protein binding" evidence=IEA

GO:0019900 "kinase binding" evidence=IEA

GO:0006515 "misfolded or incompletely synthesized protein catabolic process" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0000151 "ubiquitin ligase complex" evidence=IEA

UNIPROTKB|F1MUH4 STUB1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 518 (187.4 bits), Expect = 7.7e-64, Sum P(2) = 7.7e-64
 Identities = 105/202 (51%), Positives = 142/202 (70%)

Query:    13 SDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCR 72
             S +ELK++GNR F  R+Y EA  CY RAI +NP++  Y+TNRALCYLK++Q+     DCR
Sbjct:    25 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQHEQALADCR 84

Query:    73 KALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIACQLRIAKK 132
             +ALEL+   VKA FFLGQ   E+  YDEA+ +LQRAY+L++EQ LN+GDDI   LRIAKK
Sbjct:    85 RALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYNLAKEQRLNFGDDIPSALRIAKK 144

Query:   133 KRWAETEEKRIAQEIELLTYLNRLITEDAEKELGSIRRDAETKRLDGDA-VQEAVMRIEA 191
             KRW   EE+RI QE EL +YL RLI  + E+EL   +R+ E    D     Q+A   IEA
Sbjct:   145 KRWNSIEERRIHQENELHSYLTRLIVAERERELEECQRNHEGDEDDSHIRAQQAC--IEA 202

Query:   192 RRDRSMAELNDLFVAIDERRRK 213
             + D+ +A++++LF  +DE+R+K
Sbjct:   203 KHDKYLADMDELFSQVDEKRKK 224

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0000151 "ubiquitin ligase complex" evidence=IEA

UNIPROTKB|F1P105 STUB1 "STIP1 homology and U box-containing protein 1" [Gallus gallus (taxid:9031)]

 Score = 414 (150.8 bits), Expect = 4.8e-54, Sum P(2) = 4.8e-54
 Identities = 83/171 (48%), Positives = 115/171 (67%)

Query:    43 KNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAV 102
             +NP++  Y+TNRALCYLK++Q+     DC++ALEL+   VKA FFLGQ   E+ +YDEA+
Sbjct:     2 RNPLVAVYYTNRALCYLKMQQHDKALADCKRALELDGQSVKAHFFLGQCQMEMENYDEAI 61

Query:   103 KHLQRAYDLSREQNLNYGDDIACQLRIAKKKRWAETEEKRIAQEIELLTYLNRLITEDAE 162
              +LQRAY+L++EQ LN+GDDI   LRIAKKKRW   EEKRI QE EL +YL RLI  + E
Sbjct:    62 ANLQRAYNLAKEQRLNFGDDIPSALRIAKKKRWNSIEEKRINQENELHSYLTRLIMAEKE 121

Query:   163 KELGSIRRDAETKRLDGDAVQEAVMRIEARRDRSMAELNDLFVAIDERRRK 213
             +EL   R+  + + +D    +  +  IEA+  +       LF  +DE+R+K
Sbjct:   122 RELAECRKAQQEENVDESRGRVQLAGIEAKHLKLQCGGIQLFSQVDEKRKK 172

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006515 "misfolded or incompletely synthesized protein catabolic process" evidence=IEA

GO:0019900 "kinase binding" evidence=IEA

GO:0030544 "Hsp70 protein binding" evidence=IEA

GO:0030579 "ubiquitin-dependent SMAD protein catabolic process" evidence=IEA

GO:0030911 "TPR domain binding" evidence=IEA

GO:0031398 "positive regulation of protein ubiquitination" evidence=IEA

GO:0031625 "ubiquitin protein ligase binding" evidence=IEA

GO:0031943 "regulation of glucocorticoid metabolic process" evidence=IEA

GO:0032436 "positive regulation of proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0034450 "ubiquitin-ubiquitin ligase activity" evidence=IEA

GO:0042405 "nuclear inclusion body" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0046332 "SMAD binding" evidence=IEA

GO:0051787 "misfolded protein binding" evidence=IEA

GO:0051865 "protein autoubiquitination" evidence=IEA

GO:0051879 "Hsp90 protein binding" evidence=IEA

GO:0070534 "protein K63-linked ubiquitination" evidence=IEA

GO:0071218 "cellular response to misfolded protein" evidence=IEA

GO:0090035 "positive regulation of chaperone-mediated protein complex assembly" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5ZHY5	CHIP_CHICK	6, ., 3, ., 2, ., -	0.4571	0.9525	0.7675	yes	N/A
Q9SRS9	CHIP_ARATH	6, ., 3, ., 2, ., -	0.3269	0.9328	0.8489	yes	N/A
Q9UNE7	CHIP_HUMAN	6, ., 3, ., 2, ., -	0.4697	0.9446	0.7887	yes	N/A
Q9WUD1	CHIP_MOUSE	6, ., 3, ., 2, ., -	0.4733	0.9446	0.7861	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.3.2	LOW CONFIDENCE prediction!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	253
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	4e-17
pfam04564	73	pfam04564, U-box, U-box domain	9e-12
pfam13414	69	pfam13414, TPR_11, TPR repeat	6e-11
TIGR00990	615	TIGR00990, 3a0801s09, mitochondrial precursor prot	3e-09
PLN03088	356	PLN03088, PLN03088, SGT1, suppressor of G2 allele	1e-08
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	4e-06
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	1e-05
pfam12895	80	pfam12895, Apc3, Anaphase-promoting complex, cyclo	1e-05
pfam13414	69	pfam13414, TPR_11, TPR repeat	3e-05
smart00504	63	smart00504, Ubox, Modified RING finger domain	1e-04

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 74.0 bits (182), Expect = 4e-17
 Identities = 33/94 (35%), Positives = 54/94 (57%)

Query: 15  KELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKA 74
           + L + GN Y+ L  Y+EA+  Y +A+  +P     + N A  Y KL +Y    +D  KA
Sbjct: 1   EALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKA 60

Query: 75  LELEPSLVKAQFFLGQALHEINHYDEAVKHLQRA 108
           LEL+P   KA + LG A +++  Y+EA++  ++A
Sbjct: 61  LELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKA 94

Length = 100

>gnl|CDD|203049 pfam04564, U-box, U-box domain

 Score = 58.8 bits (143), Expect = 9e-12
 Identities = 20/44 (45%), Positives = 26/44 (59%)

Query: 206 AIDERRRKVGHFDPVTRVKLSADQLIPNFAMKEVVDNFLQENDW 249
            I+     V   DP TR  L+ DQLIPN  +KE +D +L+EN W
Sbjct: 30  TIERHLLSVDPTDPFTREPLTHDQLIPNLELKEKIDAWLEENRW 73

This domain is related to the Ring finger pfam00097 but lacks the zinc binding residues. Length = 73

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 56.6 bits (137), Expect = 6e-11
 Identities = 29/66 (43%), Positives = 38/66 (57%), Gaps = 1/66 (1%)

Query: 15 KELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKL-KQYVHCCDDCRK 73
          + LK+ GN  F L  Y+EAI  Y +A+  +P     + N AL YLKL K Y    +D  K
Sbjct: 4  EALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLEK 63

Query: 74 ALELEP 79
          ALEL+P
Sbjct: 64 ALELDP 69

Length = 69

>gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

 Score = 56.9 bits (137), Expect = 3e-09
 Identities = 28/86 (32%), Positives = 46/86 (53%), Gaps = 1/86 (1%)

Query: 17  LKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALE 76
           LK++GN+ +  + + +AI  Y++AI   P  P Y++NRA C+  L  +    +D   ALE
Sbjct: 130 LKEKGNKAYRNKDFNKAIKLYSKAIECKP-DPVYYSNRAACHNALGDWEKVVEDTTAALE 188

Query: 77  LEPSLVKAQFFLGQALHEINHYDEAV 102
           L+P   KA      A   +  Y +A+
Sbjct: 189 LDPDYSKALNRRANAYDGLGKYADAL 214

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615

>gnl|CDD|215568 PLN03088, PLN03088, SGT1, suppressor of G2 allele of SKP1; Provisional

 Score = 54.0 bits (130), Expect = 1e-08
 Identities = 33/134 (24%), Positives = 61/134 (45%), Gaps = 14/134 (10%)

Query: 15  KELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKA 74
           K+L+D+    F    +  A++ YT+AI  +P     + +RA   +KL  +     D  KA
Sbjct: 3   KDLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKA 62

Query: 75  LELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIACQLRIAKKKR 134
           +EL+PSL KA    G A  ++  Y  A   L++   L+                 ++  +
Sbjct: 63  IELDPSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGD--------------SRFTK 108

Query: 135 WAETEEKRIAQEIE 148
             +  +++IA+E +
Sbjct: 109 LIKECDEKIAEEEK 122

Length = 356

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 43.9 bits (104), Expect = 4e-06
 Identities = 21/60 (35%), Positives = 32/60 (53%)

Query: 21  GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
              Y+ L +YEEA+  Y +A+  +P     + N  L Y KL +Y    +   KALEL+P+
Sbjct: 41  AAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100

Length = 100

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 42.4 bits (100), Expect = 1e-05
 Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 7/78 (8%)

Query: 44  NPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELE-------PSLVKAQFFLGQALHEIN 96
           +P + +   N AL   +L  Y    +   KALEL        P   +A   L +    + 
Sbjct: 1   HPDLAAALNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALG 60

Query: 97  HYDEAVKHLQRAYDLSRE 114
            YDEA+++L++A  L   
Sbjct: 61  DYDEALEYLEKALALREA 78

Length = 78

>gnl|CDD|221837 pfam12895, Apc3, Anaphase-promoting complex, cyclosome, subunit 3

 Score = 42.2 bits (100), Expect = 1e-05
 Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 3/81 (3%)

Query: 28  RQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFF 87
             YE AI    + +   P     +   A CY    QY    +  RK L+L+ S    ++ 
Sbjct: 3   GNYENAIFLAEKLLALTPSNEDAYL-LAQCYFLQGQYKRAYELLRK-LKLDNSS-GCRYL 59

Query: 88  LGQALHEINHYDEAVKHLQRA 108
           L Q L ++  YDEA+  L++A
Sbjct: 60  LAQCLLKLGKYDEAIAVLEKA 80

Apc3, otherwise known as Cdc27, is one of the subunits of the anaphase-promoting complex or cyclosome. The anaphase-promoting complex is a multiprotein subunit E3 ubiquitin ligase complex that controls segregation of chromosomes and exit from mitosis in eukaryotes. The protein members of this family contain TPR repeats just as those of Apc7 do, and it appears that these TPR units bind the C-termini of the APC co-activators CDH1 and CDC20. Length = 80

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 40.8 bits (96), Expect = 3e-05
 Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 1/63 (1%)

Query: 51  FTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEIN-HYDEAVKHLQRAY 109
             N      KL  Y    +   KALEL+P   +A + L  A  ++   Y+EA++ L++A 
Sbjct: 6   LKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLEKAL 65

Query: 110 DLS 112
           +L 
Sbjct: 66  ELD 68

Length = 69

>gnl|CDD|128780 smart00504, Ubox, Modified RING finger domain

 Score = 38.8 bits (91), Expect = 1e-04
 Identities = 11/28 (39%), Positives = 16/28 (57%)

Query: 216 HFDPVTRVKLSADQLIPNFAMKEVVDNF 243
             DPVT   L+ + LIPN A+K  +  +
Sbjct: 36  GTDPVTGQPLTHEDLIPNLALKSAIQEW 63

Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination. Length = 63

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	253
KOG4642|consensus	284		100.0
KOG0553|consensus	304		99.85
KOG0548|consensus	539		99.76
PRK15359	144	type III secretion system chaperone protein SscB;	99.71
KOG0550|consensus	486		99.71
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.67
KOG0543|consensus	397		99.66
KOG4234|consensus	271		99.65
KOG1126|consensus	638		99.65
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.64
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.64
KOG4626|consensus	966		99.64
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.63
KOG4648|consensus	536		99.61
KOG4626|consensus	966		99.61
KOG0547|consensus	606		99.6
PRK11189	296	lipoprotein NlpI; Provisional	99.58
KOG0548|consensus	539		99.52
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.52
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.51
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.5
PRK12370	553	invasion protein regulator; Provisional	99.48
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.47
KOG0551|consensus	390		99.44
PRK12370	553	invasion protein regulator; Provisional	99.44
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	99.43
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	99.43
KOG1125|consensus	579		99.42
KOG0624|consensus	504		99.41
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.41
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.4
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.4
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	99.4
KOG0545|consensus	329		99.39
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.38
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.38
PRK15331	165	chaperone protein SicA; Provisional	99.37
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.37
KOG0547|consensus	606		99.37
PRK11189	296	lipoprotein NlpI; Provisional	99.36
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.35
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.35
KOG1126|consensus	638		99.35
PRK15359	144	type III secretion system chaperone protein SscB;	99.34
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	99.34
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.34
KOG1155|consensus	559		99.32
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	99.31
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.31
KOG1155|consensus	559		99.31
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	99.29
KOG0376|consensus	476		99.28
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.27
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.25
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.25
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	99.25
PLN02789	320	farnesyltranstransferase	99.23
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	99.22
KOG0624|consensus	504		99.22
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.22
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.2
PRK10803	263	tol-pal system protein YbgF; Provisional	99.2
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.2
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.19
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.18
KOG4555|consensus	175		99.16
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.15
KOG2076|consensus	895		99.14
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.14
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.11
KOG4162|consensus	799		99.11
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.1
PLN02789	320	farnesyltranstransferase	99.1
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	99.08
KOG1173|consensus	611		99.08
PF13371	73	TPR_9: Tetratricopeptide repeat	99.08
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.07
KOG1125|consensus	579		99.05
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.04
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.03
KOG0553|consensus	304		99.02
PRK14574	822	hmsH outer membrane protein; Provisional	99.02
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.02
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	99.01
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	99.01
PF13512	142	TPR_18: Tetratricopeptide repeat	99.0
PF12688	120	TPR_5: Tetratrico peptide repeat	99.0
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.0
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	99.0
KOG0550|consensus	486		98.99
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.99
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	98.97
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.96
PRK14574	822	hmsH outer membrane protein; Provisional	98.95
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.94
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.93
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.93
KOG1308|consensus	377		98.93
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	98.9
PRK11906	458	transcriptional regulator; Provisional	98.89
KOG2076|consensus	895		98.89
KOG1156|consensus	700		98.88
KOG3060|consensus	289		98.86
PF13371	73	TPR_9: Tetratricopeptide repeat	98.86
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.85
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.84
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.84
KOG1840|consensus	508		98.84
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.83
KOG1156|consensus	700		98.83
KOG1840|consensus	508		98.82
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.81
KOG3060|consensus	289		98.81
KOG2003|consensus	840		98.8
KOG1173|consensus	611		98.79
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	98.76
KOG2002|consensus	1018		98.76
KOG1127|consensus	1238		98.75
KOG1174|consensus	564		98.74
KOG2002|consensus	1018		98.74
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.74
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.72
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.71
PRK11906	458	transcriptional regulator; Provisional	98.71
KOG1128|consensus	777		98.71
PF04564	73	U-box: U-box domain; InterPro: IPR003613 Quality c	98.71
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	98.7
KOG0543|consensus	397		98.69
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.69
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.65
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	98.64
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.62
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.61
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	98.6
KOG2003|consensus	840		98.59
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.58
KOG1129|consensus	478		98.56
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.55
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.53
KOG1128|consensus	777		98.52
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	98.49
KOG1174|consensus	564		98.49
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.48
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	98.48
KOG4162|consensus	799		98.46
COG4105	254	ComL DNA uptake lipoprotein [General function pred	98.45
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	98.44
KOG1129|consensus	478		98.44
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	98.41
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	98.41
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	98.4
PRK10803	263	tol-pal system protein YbgF; Provisional	98.4
PF13428	44	TPR_14: Tetratricopeptide repeat	98.38
KOG1310|consensus	758		98.36
PF13431	34	TPR_17: Tetratricopeptide repeat	98.34
KOG0495|consensus	913		98.33
KOG1127|consensus	1238		98.33
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	98.33
PF13431	34	TPR_17: Tetratricopeptide repeat	98.31
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.31
PRK15331	165	chaperone protein SicA; Provisional	98.26
KOG2376|consensus	652		98.26
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	98.25
PF13428	44	TPR_14: Tetratricopeptide repeat	98.24
COG4700	251	Uncharacterized protein conserved in bacteria cont	98.24
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.22
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.22
KOG4234|consensus	271		98.19
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	98.16
KOG4648|consensus	536		98.16
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	98.12
PF13512	142	TPR_18: Tetratricopeptide repeat	98.12
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	98.12
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	98.1
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	98.1
PF03704	146	BTAD: Bacterial transcriptional activator domain;	98.07
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	98.06
PF12688	120	TPR_5: Tetratrico peptide repeat	98.05
KOG0495|consensus	913		98.03
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	97.99
KOG3785|consensus	557		97.94
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	97.89
KOG1130|consensus	639		97.86
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	97.83
KOG4555|consensus	175		97.8
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	97.79
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.75
KOG1130|consensus	639		97.75
KOG2796|consensus	366		97.75
KOG2053|consensus	932		97.75
KOG4642|consensus	284		97.71
KOG2396|consensus	568		97.69
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.6
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.59
KOG1915|consensus	677		97.57
COG0457	291	NrfG FOG: TPR repeat [General function prediction	97.56
KOG2376|consensus	652		97.54
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	97.54
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	97.53
KOG4340|consensus	459		97.53
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	97.51
KOG2796|consensus	366		97.51
KOG1586|consensus	288		97.49
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	97.49
COG3118	304	Thioredoxin domain-containing protein [Posttransla	97.49
KOG4340|consensus	459		97.48
KOG3785|consensus	557		97.45
COG0457	291	NrfG FOG: TPR repeat [General function prediction	97.44
KOG0546|consensus	372		97.37
KOG0545|consensus	329		97.37
smart00504	63	Ubox Modified RING finger domain. Modified RING fi	97.34
KOG0376|consensus	476		97.31
KOG0551|consensus	390		97.3
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	97.28
PRK10941	269	hypothetical protein; Provisional	97.26
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	97.25
PRK10941	269	hypothetical protein; Provisional	97.23
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.23
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	97.22
COG4105	254	ComL DNA uptake lipoprotein [General function pred	97.2
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	97.2
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	97.19
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	97.19
KOG3824|consensus	472		97.18
KOG2471|consensus	696		97.18
COG4700	251	Uncharacterized protein conserved in bacteria cont	97.15
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.14
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	97.11
KOG3081|consensus	299		97.1
PLN03218	1060	maturation of RBCL 1; Provisional	97.09
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	97.07
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	97.06
PLN03218	1060	maturation of RBCL 1; Provisional	97.04
KOG3081|consensus	299		97.03
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	97.03
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	97.03
KOG2471|consensus	696		96.99
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	96.96
PLN03077	857	Protein ECB2; Provisional	96.96
KOG4814|consensus	872		96.9
PRK04841	903	transcriptional regulator MalT; Provisional	96.89
KOG1070|consensus	1710		96.87
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	96.86
KOG4507|consensus	886		96.83
PRK04841	903	transcriptional regulator MalT; Provisional	96.81
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	96.8
KOG1586|consensus	288		96.76
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	96.75
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	96.73
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	96.68
KOG3824|consensus	472		96.67
KOG1941|consensus	518		96.67
KOG2053|consensus	932		96.65
KOG1585|consensus	308		96.62
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	96.56
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	96.56
PLN03077	857	Protein ECB2; Provisional	96.49
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	96.49
KOG1070|consensus	1710		96.49
KOG2610|consensus	491		96.47
KOG2610|consensus	491		96.39
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	96.31
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	96.25
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	96.22
COG4976	287	Predicted methyltransferase (contains TPR repeat)	96.21
KOG1308|consensus	377		96.15
COG4976	287	Predicted methyltransferase (contains TPR repeat)	96.1
KOG4507|consensus	886		96.03
KOG3364|consensus	149		95.94
KOG1915|consensus	677		95.93
COG2912	269	Uncharacterized conserved protein [Function unknow	95.92
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	95.84
KOG4151|consensus	748		95.73
COG2912	269	Uncharacterized conserved protein [Function unknow	95.73
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	95.67
COG5191	435	Uncharacterized conserved protein, contains HAT (H	95.65
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	95.49
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	95.47
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	95.47
KOG1941|consensus	518		95.45
COG3118	304	Thioredoxin domain-containing protein [Posttransla	95.3
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	95.29
KOG2396|consensus	568		95.2
KOG3364|consensus	149		95.09
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	94.93
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	94.9
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	94.78
COG5191	435	Uncharacterized conserved protein, contains HAT (H	94.75
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	94.58
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	94.31
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	94.23
KOG3617|consensus	1416		94.19
KOG1585|consensus	308		94.15
COG3898	531	Uncharacterized membrane-bound protein [Function u	94.1
KOG2300|consensus	629		94.07
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	94.03
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	94.0
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	93.86
KOG0530|consensus	318		93.78
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	93.73
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	93.71
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	93.16
COG3629	280	DnrI DNA-binding transcriptional activator of the	93.15
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	93.06
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	92.99
KOG0530|consensus	318		92.93
KOG3807|consensus	556		92.92
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	92.83
COG3947	361	Response regulator containing CheY-like receiver a	92.64
KOG0686|consensus	466		92.61
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	92.59
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	92.5
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	92.25
KOG2581|consensus	493		92.13
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	92.12
COG3629	280	DnrI DNA-binding transcriptional activator of the	91.76
PF14863	141	Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB	91.75
KOG1550|consensus	552		91.72
KOG1839|consensus	1236		91.7
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	91.61
COG3898	531	Uncharacterized membrane-bound protein [Function u	91.56
KOG3617|consensus	1416		91.55
KOG2047|consensus	835		91.3
KOG2422|consensus	665		91.24
KOG2042|consensus	943		91.17
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	90.98
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	90.85
KOG1550|consensus	552		90.7
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	90.55
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	90.54
cd02682	75	MIT_AAA_Arch MIT: domain contained within Microtub	90.37
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	89.96
KOG0529|consensus	421		89.89
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	89.76
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	89.34
KOG2422|consensus	665		89.29
KOG2300|consensus	629		89.07
KOG1914|consensus	656		89.05
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	88.83
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	88.6
KOG2047|consensus	835		88.25
KOG4814|consensus	872		88.25
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	88.2
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	88.09
KOG1914|consensus	656		88.02
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	87.77
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	87.75
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	87.67
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	87.48
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	87.33
COG4455	273	ImpE Protein of avirulence locus involved in tempe	87.3
smart00386	33	HAT HAT (Half-A-TPR) repeats. Present in several R	87.02
KOG0529|consensus	421		86.94
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	86.91
COG4455	273	ImpE Protein of avirulence locus involved in tempe	86.62
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	86.53
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	86.48
KOG1839|consensus	1236		86.09
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	86.01
KOG0546|consensus	372		85.84
KOG2041|consensus	1189		85.73
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	85.57
COG3947	361	Response regulator containing CheY-like receiver a	85.41
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	85.39
cd02682	75	MIT_AAA_Arch MIT: domain contained within Microtub	85.18
PF14863	141	Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB	84.73
PF04212	69	MIT: MIT (microtubule interacting and transport) d	83.74
COG5113	929	UFD2 Ubiquitin fusion degradation protein 2 [Postt	83.45
PF12123	45	Amidase02_C: N-acetylmuramoyl-l-alanine amidase; I	83.41
KOG0985|consensus	1666		83.41
PF06416	113	DUF1076: Protein of unknown function (DUF1076); In	83.27
KOG1310|consensus	758		82.25
PF10952	140	DUF2753: Protein of unknown function (DUF2753); In	81.02
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	80.66
KOG0289|consensus	506		80.26
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	80.17

>KOG4642|consensus

Probab=100.00  E-value=1.3e-41  Score=264.86  Aligned_cols=243  Identities=51%  Similarity=0.862  Sum_probs=215.2

Q ss_pred             CCCCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHH
Q psy11461          7 FTTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQF   86 (253)
Q Consensus         7 ~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~   86 (253)
                      ++.....+..+...|+.+|....|..||.+|.+||.++|..+.+|.|+|.||+++.+|+.+..++++|++++|+.++++|
T Consensus         3 ~~~~s~~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~   82 (284)
T KOG4642|consen    3 SPEMSESAEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHY   82 (284)
T ss_pred             CcccchHHHHHHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHH
Confidence            34455668899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCHHHHHHHHHHHHhhchhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11461         87 FLGQALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIACQLRIAKKKRWAETEEKRIAQEIELLTYLNRLITEDAEKELG  166 (253)
Q Consensus        87 ~lg~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~  166 (253)
                      .+|.+......|++|+..+.+|+.+...++..++.+|...++.++++.|...+.+|+.+..++.+++..+++.+.++.+.
T Consensus        83 flg~~~l~s~~~~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~El~~yl~slie~~~~~~~s  162 (284)
T KOG4642|consen   83 FLGQWLLQSKGYDEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQELELHSYLESLIEGDRERELS  162 (284)
T ss_pred             HHHHHHHhhccccHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHhhHHHHHHHHhccchhhHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999877777


Q ss_pred             HHHhhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchh---------------------------------
Q psy11461        167 SIRRDAETKRLDGDAVQEAVMRIEARRDRSMAELNDLFVAIDERRRK---------------------------------  213 (253)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~---------------------------------  213 (253)
                      ....-.+    ++..+.-...-++...+..++++.++|..+++..++                                 
T Consensus       163 ~~~~N~~----sde~~k~~q~~~~~~~d~~~kel~elf~~v~e~rk~rEvpd~lcgkIt~el~~~pvi~psgIty~ra~I  238 (284)
T KOG4642|consen  163 EWQENGE----SDEHLKTMQVPIEQDHDHTTKELSELFSKVDEKRKKREVPDYLCGKITLELMREPVITPSGITYDRADI  238 (284)
T ss_pred             HHHHcCC----ChHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHhccccccchhhhhhhHHhhcCCccCccccchhHHHH
Confidence            5554321    112222222334556777778888888777665554                                 


Q ss_pred             ------cCCCCCCCCCCCCCCCCcCcHHHHHHHHHHhhhcCcccCC
Q psy11461        214 ------VGHFDPVTRVKLSADQLIPNFAMKEVVDNFLQENDWAYEY  253 (253)
Q Consensus       214 ------~g~~DP~tr~~l~~~~l~pN~~lk~a~~~~l~~n~wa~~~  253 (253)
                            +|||||+||.||++.+++||++||++|..||.+|+|+++|
T Consensus       239 ~Ehl~rvghfdpvtr~~Lte~q~ipN~alkevIa~fl~~n~w~~~~  284 (284)
T KOG4642|consen  239 EEHLQRVGHFDPVTRWPLTEYQLIPNLALKEVIAAFLKENEWADDY  284 (284)
T ss_pred             HHHHHHhccCCchhcccCCHHhhccchHHHHHHHHHHHhccccccC
Confidence                  9999999999999999999999999999999999999986

>KOG0553|consensus

Probab=99.85  E-value=1e-20  Score=153.36  Aligned_cols=106  Identities=34%  Similarity=0.593  Sum_probs=103.7

Q ss_pred             CcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q psy11461         10 NNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLG   89 (253)
Q Consensus        10 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg   89 (253)
                      ....|..++..|+.+++.++|.+|+..|++||.++|.++.+|+|||.+|.++|.++.|+++|+.||.+||.+.++|.++|
T Consensus        77 ~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG  156 (304)
T KOG0553|consen   77 DKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLG  156 (304)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHH
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461         90 QALHEINHYDEAVKHLQRAYDLSREQ  115 (253)
Q Consensus        90 ~~~~~~~~~~~A~~~~~~al~l~p~~  115 (253)
                      .+|..+|++.+|++.|++||+++|++
T Consensus       157 ~A~~~~gk~~~A~~aykKaLeldP~N  182 (304)
T KOG0553|consen  157 LAYLALGKYEEAIEAYKKALELDPDN  182 (304)
T ss_pred             HHHHccCcHHHHHHHHHhhhccCCCc
Confidence            99999999999999999999999998

>KOG0548|consensus

Probab=99.76  E-value=2.1e-17  Score=142.82  Aligned_cols=144  Identities=30%  Similarity=0.493  Sum_probs=123.1

Q ss_pred             CcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q psy11461         10 NNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLG   89 (253)
Q Consensus        10 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg   89 (253)
                      +|..+...+..|+.+|..|+|..|+..|++||..+|+++.+|+|||.||.+++.+..|+.+++.+++++|+++++|++.|
T Consensus       354 ~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg  433 (539)
T KOG0548|consen  354 NPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKG  433 (539)
T ss_pred             ChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHH
Confidence            45568888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCHHHHHHHHHHHHhhchhcccchHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Q psy11461         90 QALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIACQLRIAKKKRW----AETEEKRIAQEIELLTYLNRLIT  158 (253)
Q Consensus        90 ~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~l~~  158 (253)
                      .++..+.+|+.|.+.|.++++++|++     .++...+++|.....    .....++...+|+++.+|...+.
T Consensus       434 ~al~~mk~ydkAleay~eale~dp~~-----~e~~~~~~rc~~a~~~~~~~ee~~~r~~~dpev~~il~d~~m  501 (539)
T KOG0548|consen  434 AALRAMKEYDKALEAYQEALELDPSN-----AEAIDGYRRCVEAQRGDETPEETKRRAMADPEVQAILQDPAM  501 (539)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCchh-----HHHHHHHHHHHHHhhcCCCHHHHHHhhccCHHHHHHHcCHHH
Confidence            99999999999999999999999987     555666666655421    11122455667888777654433

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.71  E-value=5.6e-16  Score=117.01  Aligned_cols=104  Identities=17%  Similarity=0.176  Sum_probs=99.8

Q ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q psy11461         14 DKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALH   93 (253)
Q Consensus        14 a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~   93 (253)
                      +..+..+|..++..|+|++|+.+|.+++..+|.++.++.++|.++..+|++++|+..|.+++.++|+++.+++++|.++.
T Consensus        24 p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~  103 (144)
T PRK15359         24 PETVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLK  103 (144)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence            44577899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhCCHHHHHHHHHHHHhhchhccc
Q psy11461         94 EINHYDEAVKHLQRAYDLSREQNL  117 (253)
Q Consensus        94 ~~~~~~~A~~~~~~al~l~p~~~~  117 (253)
                      .+|++++|+..|.++++++|++..
T Consensus       104 ~~g~~~eAi~~~~~Al~~~p~~~~  127 (144)
T PRK15359        104 MMGEPGLAREAFQTAIKMSYADAS  127 (144)
T ss_pred             HcCCHHHHHHHHHHHHHhCCCChH
Confidence            999999999999999999999854

>KOG0550|consensus

Probab=99.71  E-value=1.9e-16  Score=133.19  Aligned_cols=182  Identities=21%  Similarity=0.379  Sum_probs=139.5

Q ss_pred             CcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHH
Q psy11461         10 NNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVI----PSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQ   85 (253)
Q Consensus        10 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~----~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~   85 (253)
                      .+..-..++..||..|++|.|..|.++|+.+|.++|++    +.+|.|||.+...+|+..+|+.+|..|+.|||..++++
T Consensus       245 ~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikal  324 (486)
T KOG0550|consen  245 MPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKAL  324 (486)
T ss_pred             hHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHH
Confidence            45566788999999999999999999999999999974    56899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHhhchhc-ccchHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH-HHHHHHHHHHHHH
Q psy11461         86 FFLGQALHEINHYDEAVKHLQRAYDLSREQ-NLNYGDDIACQLRIAKKKRWAETEE-KRIAQEIEL-LTYLNRLITEDAE  162 (253)
Q Consensus        86 ~~lg~~~~~~~~~~~A~~~~~~al~l~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~l~~l~~~~~~  162 (253)
                      ...|.|+..+++|++|++.|++|+++..+- ...........+++.+++.|..... .+...+.++ .++-...|..++.
T Consensus       325 l~ra~c~l~le~~e~AV~d~~~a~q~~~s~e~r~~l~~A~~aLkkSkRkd~ykilGi~~~as~~eikkayrk~AL~~Hpd  404 (486)
T KOG0550|consen  325 LRRANCHLALEKWEEAVEDYEKAMQLEKDCEIRRTLREAQLALKKSKRKDWYKILGISRNASDDEIKKAYRKLALVHHPD  404 (486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhhhhhHHHHhhhhhhcccchhhhHHHHHHHHhCCC
Confidence            999999999999999999999999987662 1123344556677777777776653 222222333 2222222222221


Q ss_pred             HHHHHHHhhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchh
Q psy11461        163 KELGSIRRDAETKRLDGDAVQEAVMRIEARRDRSMAELNDLFVAIDERRRK  213 (253)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~  213 (253)
                      ++..                      -+.+++..+.++++.|.++++..++
T Consensus       405 ~~ag----------------------sq~eaE~kFkevgeAy~il~d~~kr  433 (486)
T KOG0550|consen  405 KNAG----------------------SQKEAEAKFKEVGEAYTILSDPMKR  433 (486)
T ss_pred             cCcc----------------------hhHHHHHHHHHHHHHHHHhcCHHHH
Confidence            1110                      1457888999999999988766554

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.67  E-value=4.3e-15  Score=111.30  Aligned_cols=104  Identities=12%  Similarity=0.125  Sum_probs=100.5

Q ss_pred             cccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q psy11461         11 NLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQ   90 (253)
Q Consensus        11 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~   90 (253)
                      ++.-..++.+|..++..|++++|+..|+-+...+|.++.+|+++|.|+..+|+|.+|+..|.+|+.++|+++.+++++|.
T Consensus        32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~  111 (157)
T PRK15363         32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAE  111 (157)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHH
Confidence            56678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCHHHHHHHHHHHHhhchh
Q psy11461         91 ALHEINHYDEAVKHLQRAYDLSRE  114 (253)
Q Consensus        91 ~~~~~~~~~~A~~~~~~al~l~p~  114 (253)
                      |++..|+.+.|.+.|+.|+.++.+
T Consensus       112 c~L~lG~~~~A~~aF~~Ai~~~~~  135 (157)
T PRK15363        112 CYLACDNVCYAIKALKAVVRICGE  135 (157)
T ss_pred             HHHHcCCHHHHHHHHHHHHHHhcc
Confidence            999999999999999999999843

>KOG0543|consensus

Probab=99.66  E-value=3.1e-15  Score=126.25  Aligned_cols=117  Identities=33%  Similarity=0.457  Sum_probs=102.8

Q ss_pred             ccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCC---------------CHHHHHHHHHHHHHhhCHHHHHHHHHHHHh
Q psy11461         12 LSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPV---------------IPSYFTNRALCYLKLKQYVHCCDDCRKALE   76 (253)
Q Consensus        12 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~---------------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~   76 (253)
                      ..+...+..||.+|+.|+|..|...|.+|+..-+.               -..++.|+|.||.++++|.+|+..|.++|.
T Consensus       206 ~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe  285 (397)
T KOG0543|consen  206 EAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLE  285 (397)
T ss_pred             HHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHh
Confidence            45677889999999999999999999999877331               124799999999999999999999999999


Q ss_pred             hCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhcccchHHHHHHHHHHHHHH
Q psy11461         77 LEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIACQLRIAKKK  133 (253)
Q Consensus        77 l~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~  133 (253)
                      ++|+|++|+|+.|.++..+|+|+.|+..|++|+++.|+|     ..+...+.+++.+
T Consensus       286 ~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~N-----ka~~~el~~l~~k  337 (397)
T KOG0543|consen  286 LDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSN-----KAARAELIKLKQK  337 (397)
T ss_pred             cCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCc-----HHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999998     4455555555544

>KOG4234|consensus

Probab=99.65  E-value=1e-14  Score=112.15  Aligned_cols=104  Identities=30%  Similarity=0.495  Sum_probs=99.1

Q ss_pred             ccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHH
Q psy11461         12 LSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIP-----SYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQF   86 (253)
Q Consensus        12 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~-----~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~   86 (253)
                      ..+..++..||.+|..|+|.+|...|+.||...|..+     .+|.|+|.|+++++.|+.|+.+|.+||+++|.+.+|+.
T Consensus        93 ~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~  172 (271)
T KOG4234|consen   93 EKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALE  172 (271)
T ss_pred             HHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHH
Confidence            3567899999999999999999999999999999854     58999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461         87 FLGQALHEINHYDEAVKHLQRAYDLSREQ  115 (253)
Q Consensus        87 ~lg~~~~~~~~~~~A~~~~~~al~l~p~~  115 (253)
                      ++|.+|-.+.+|++|+..|.+.++++|..
T Consensus       173 RRAeayek~ek~eealeDyKki~E~dPs~  201 (271)
T KOG4234|consen  173 RRAEAYEKMEKYEEALEDYKKILESDPSR  201 (271)
T ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHhCcch
Confidence            99999999999999999999999999996

>KOG1126|consensus

Probab=99.65  E-value=1.3e-15  Score=134.69  Aligned_cols=114  Identities=21%  Similarity=0.280  Sum_probs=109.4

Q ss_pred             CCCCCCCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHH
Q psy11461          4 SHNFTTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVK   83 (253)
Q Consensus         4 ~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~   83 (253)
                      +..+.++|..+..|+.+||+|.-+++++.||++|.+||.++|..+.+|+.+|.=+.....++.|..+|+.||..+|.+..
T Consensus       411 q~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYn  490 (638)
T KOG1126|consen  411 QDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYN  490 (638)
T ss_pred             HHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhH
Confidence            34567889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHhhchhccc
Q psy11461         84 AQFFLGQALHEINHYDEAVKHLQRAYDLSREQNL  117 (253)
Q Consensus        84 a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~~  117 (253)
                      |||-+|.+|.++++++.|+-.|++|+.++|.+..
T Consensus       491 AwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsv  524 (638)
T KOG1126|consen  491 AWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSV  524 (638)
T ss_pred             HHHhhhhheeccchhhHHHHHHHhhhcCCccchh
Confidence            9999999999999999999999999999999843

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.64  E-value=7.3e-15  Score=126.91  Aligned_cols=102  Identities=29%  Similarity=0.463  Sum_probs=99.0

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q psy11461         15 KELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHE   94 (253)
Q Consensus        15 ~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~   94 (253)
                      ..++..|+.++..|+|..|+.+|.+++..+|.++.+|.++|.+|..+|++++|+.++++++.++|++..+++++|.++..
T Consensus         3 ~~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~   82 (356)
T PLN03088          3 KDLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMK   82 (356)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence            45788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCHHHHHHHHHHHHhhchhcc
Q psy11461         95 INHYDEAVKHLQRAYDLSREQN  116 (253)
Q Consensus        95 ~~~~~~A~~~~~~al~l~p~~~  116 (253)
                      +|++++|+..|+++++++|++.
T Consensus        83 lg~~~eA~~~~~~al~l~P~~~  104 (356)
T PLN03088         83 LEEYQTAKAALEKGASLAPGDS  104 (356)
T ss_pred             hCCHHHHHHHHHHHHHhCCCCH
Confidence            9999999999999999999973

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.64  E-value=1.4e-14  Score=107.88  Aligned_cols=110  Identities=19%  Similarity=0.296  Sum_probs=105.4

Q ss_pred             CCCCCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHH
Q psy11461          6 NFTTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQ   85 (253)
Q Consensus         6 ~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~   85 (253)
                      ....+|.++...+.+|..++..|++++|+..|++++..+|.++.++.++|.++..+|++++|+..+.+++.++|.+...+
T Consensus         9 ~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~   88 (135)
T TIGR02552         9 LLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPY   88 (135)
T ss_pred             HHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHH
Confidence            34567778889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461         86 FFLGQALHEINHYDEAVKHLQRAYDLSREQ  115 (253)
Q Consensus        86 ~~lg~~~~~~~~~~~A~~~~~~al~l~p~~  115 (253)
                      +.+|.++...|++++|+..|+++++++|++
T Consensus        89 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~  118 (135)
T TIGR02552        89 FHAAECLLALGEPESALKALDLAIEICGEN  118 (135)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence            999999999999999999999999999987

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG4626|consensus

Probab=99.64  E-value=3.5e-15  Score=131.18  Aligned_cols=148  Identities=22%  Similarity=0.187  Sum_probs=105.0

Q ss_pred             CCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHH
Q psy11461          9 TNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFL   88 (253)
Q Consensus         9 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l   88 (253)
                      -+|..+.+|.++|+.|...+.|+.|+.+|.+|+.+.|.++.++.|+|.+|+.+|..+-|+..|+++++++|+.+.|+.++
T Consensus       247 ldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~Nl  326 (966)
T KOG4626|consen  247 LDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNL  326 (966)
T ss_pred             CCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHH
Confidence            45677778888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHhCCHHHHHHHHHHHHhhchhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11461         89 GQALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIACQLRIAKKKRWAETEEKRIAQEIELLTYLNRL  156 (253)
Q Consensus        89 g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  156 (253)
                      |.++...|+..+|+.+|.+|+.++|+..+.+...........+-..+.....+...-.|++.+...++
T Consensus       327 anALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNL  394 (966)
T KOG4626|consen  327 ANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNL  394 (966)
T ss_pred             HHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhH
Confidence            88888888888888888888888887755444433333333333333333344444445554444433

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.63  E-value=2.4e-14  Score=113.69  Aligned_cols=109  Identities=19%  Similarity=0.233  Sum_probs=103.2

Q ss_pred             CCCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHhhC--HHHHHHHHHHHHhhCCCcHHH
Q psy11461          8 TTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCY-LKLKQ--YVHCCDDCRKALELEPSLVKA   84 (253)
Q Consensus         8 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~-~~~~~--~~~A~~~~~~al~l~p~~~~a   84 (253)
                      ..+|.++..|..+|..+...|++++|+.+|.+++.++|+++.++.++|.++ ...|+  +++|...++++++++|+++.+
T Consensus        67 ~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~a  146 (198)
T PRK10370         67 RANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTA  146 (198)
T ss_pred             HHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhH
Confidence            357889999999999999999999999999999999999999999999985 67787  599999999999999999999


Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHhhchhcc
Q psy11461         85 QFFLGQALHEINHYDEAVKHLQRAYDLSREQN  116 (253)
Q Consensus        85 ~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~  116 (253)
                      ++.+|.++...|++++|+..|++++++.|.+.
T Consensus       147 l~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~  178 (198)
T PRK10370        147 LMLLASDAFMQADYAQAIELWQKVLDLNSPRV  178 (198)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence            99999999999999999999999999999864

>KOG4648|consensus

Probab=99.61  E-value=3.9e-15  Score=122.91  Aligned_cols=103  Identities=38%  Similarity=0.566  Sum_probs=99.5

Q ss_pred             cHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q psy11461         13 SDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQAL   92 (253)
Q Consensus        13 ~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~   92 (253)
                      .+..++..||.||++|+|++||+||+++|..+|.++.++.|||.+|+++.+|..|..+|..|+.++....+||.++|.+-
T Consensus        96 ~~SEiKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR  175 (536)
T KOG4648|consen   96 KASEIKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQAR  175 (536)
T ss_pred             hhHHHHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHH
Confidence            34457899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhCCHHHHHHHHHHHHhhchhc
Q psy11461         93 HEINHYDEAVKHLQRAYDLSREQ  115 (253)
Q Consensus        93 ~~~~~~~~A~~~~~~al~l~p~~  115 (253)
                      ..+|+..+|.+.++.+|++.|++
T Consensus       176 ~~Lg~~~EAKkD~E~vL~LEP~~  198 (536)
T KOG4648|consen  176 ESLGNNMEAKKDCETVLALEPKN  198 (536)
T ss_pred             HHHhhHHHHHHhHHHHHhhCccc
Confidence            99999999999999999999996

>KOG4626|consensus

Probab=99.61  E-value=4.3e-15  Score=130.61  Aligned_cols=145  Identities=17%  Similarity=0.129  Sum_probs=103.7

Q ss_pred             CCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHH
Q psy11461          9 TNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFL   88 (253)
Q Consensus         9 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l   88 (253)
                      ..|..+.++.++|.+|+.+|..+-||.+|++||++.|+.+.+|+|+|.++...|+..+|..+|.+|+.+.|+.+.++++|
T Consensus       281 lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NL  360 (966)
T KOG4626|consen  281 LRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNL  360 (966)
T ss_pred             cCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHH
Confidence            45666777778888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHhCCHHHHHHHHHHHHhhchhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11461         89 GQALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIACQLRIAKKKRWAETEEKRIAQEIELLTYL  153 (253)
Q Consensus        89 g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  153 (253)
                      |.++.++|++++|...|.++++..|+-..++.....-+-++.+...+..-.++.++..|.+...+
T Consensus       361 gni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~  425 (966)
T KOG4626|consen  361 GNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADAL  425 (966)
T ss_pred             HHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHH
Confidence            88888888888888888888888777655544444444444444444444444555444444333

>KOG0547|consensus

Probab=99.60  E-value=2.1e-14  Score=123.17  Aligned_cols=96  Identities=38%  Similarity=0.637  Sum_probs=92.3

Q ss_pred             ccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q psy11461         12 LSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQA   91 (253)
Q Consensus        12 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~   91 (253)
                      ..+..++..||.+|+.|+|++||++|++||.+.|+.+.+|.||+.||..+|+|++.+++|.+|++++|+.++++++++.+
T Consensus       113 k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A  192 (606)
T KOG0547|consen  113 KYAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASA  192 (606)
T ss_pred             HHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHH
Confidence            45778999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCHHHHHHHHHH
Q psy11461         92 LHEINHYDEAVKHLQR  107 (253)
Q Consensus        92 ~~~~~~~~~A~~~~~~  107 (253)
                      +-.+|++.+|+....-
T Consensus       193 ~E~lg~~~eal~D~tv  208 (606)
T KOG0547|consen  193 HEQLGKFDEALFDVTV  208 (606)
T ss_pred             HHhhccHHHHHHhhhH
Confidence            9999999999987763

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.58  E-value=4.2e-14  Score=119.42  Aligned_cols=106  Identities=18%  Similarity=0.175  Sum_probs=102.6

Q ss_pred             cccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q psy11461         11 NLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQ   90 (253)
Q Consensus        11 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~   90 (253)
                      +..+..++.+|..+...|++.+|+..|++++..+|+++.+|+++|.++..+|++++|+..++++++++|++..+++++|.
T Consensus        61 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~  140 (296)
T PRK11189         61 EERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGI  140 (296)
T ss_pred             HhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            45578899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCHHHHHHHHHHHHhhchhcc
Q psy11461         91 ALHEINHYDEAVKHLQRAYDLSREQN  116 (253)
Q Consensus        91 ~~~~~~~~~~A~~~~~~al~l~p~~~  116 (253)
                      ++...|++++|++.|+++++++|+++
T Consensus       141 ~l~~~g~~~eA~~~~~~al~~~P~~~  166 (296)
T PRK11189        141 ALYYGGRYELAQDDLLAFYQDDPNDP  166 (296)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence            99999999999999999999999874

>KOG0548|consensus

Probab=99.52  E-value=7.1e-14  Score=121.18  Aligned_cols=104  Identities=28%  Similarity=0.437  Sum_probs=100.4

Q ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q psy11461         14 DKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALH   93 (253)
Q Consensus        14 a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~   93 (253)
                      +..++..||..|..|+|+.|+.+|+.+|.++|.|..+|.||..||..+|+|.+|+++..+.+.++|..+++|.++|.++.
T Consensus         2 a~e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~   81 (539)
T KOG0548|consen    2 AVELKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALF   81 (539)
T ss_pred             hhHHHHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHH
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhCCHHHHHHHHHHHHhhchhccc
Q psy11461         94 EINHYDEAVKHLQRAYDLSREQNL  117 (253)
Q Consensus        94 ~~~~~~~A~~~~~~al~l~p~~~~  117 (253)
                      .+|+|++|+..|.+.|+.+|++..
T Consensus        82 ~lg~~~eA~~ay~~GL~~d~~n~~  105 (539)
T KOG0548|consen   82 GLGDYEEAILAYSEGLEKDPSNKQ  105 (539)
T ss_pred             hcccHHHHHHHHHHHhhcCCchHH
Confidence            999999999999999999999843

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.52  E-value=3.9e-13  Score=124.52  Aligned_cols=134  Identities=17%  Similarity=0.084  Sum_probs=110.0

Q ss_pred             CcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q psy11461         10 NNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLG   89 (253)
Q Consensus        10 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg   89 (253)
                      .|..+..+..+|..++..|++++|+..|.+++..+|.++..|.++|.++..+|++++|+..+++++.++|+++.+++.+|
T Consensus       327 ~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg  406 (615)
T TIGR00990       327 GEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRA  406 (615)
T ss_pred             ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            46778889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCHHHHHHHHHHHHhhchhcccchHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11461         90 QALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIACQLRIAKKKRWAETEEKRI  143 (253)
Q Consensus        90 ~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (253)
                      .++..+|++++|+.+|++++.++|++...+....................++.+
T Consensus       407 ~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al  460 (615)
T TIGR00990       407 QLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCK  460 (615)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            999999999999999999999999875544443333333333333333333333

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.51  E-value=8.3e-13  Score=103.81  Aligned_cols=144  Identities=19%  Similarity=0.162  Sum_probs=123.8

Q ss_pred             ccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q psy11461         12 LSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQA   91 (253)
Q Consensus        12 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~   91 (253)
                      ..+.+...+|..|+..|++..|..-+++|++.+|++..+|..+|..|.++|..+.|.+.|++|++++|++...+.+.|.-
T Consensus        33 ~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~F  112 (250)
T COG3063          33 EAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAF  112 (250)
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHH
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCHHHHHHHHHHHHhhchh---cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11461         92 LHEINHYDEAVKHLQRAYDLSRE---QNLNYGDDIACQLRIAKKKRWAETEEKRIAQEIELLTYLNRL  156 (253)
Q Consensus        92 ~~~~~~~~~A~~~~~~al~l~p~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  156 (253)
                      ++.+|++++|...|++|+.- |.   ....+.+.....++..+........++.+..+|.....+..+
T Consensus       113 LC~qg~~~eA~q~F~~Al~~-P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~  179 (250)
T COG3063         113 LCAQGRPEEAMQQFERALAD-PAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLEL  179 (250)
T ss_pred             HHhCCChHHHHHHHHHHHhC-CCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHH
Confidence            99999999999999999963 43   344666677777777777777777777777666654444333

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.50  E-value=7.4e-13  Score=122.67  Aligned_cols=113  Identities=14%  Similarity=0.192  Sum_probs=101.2

Q ss_pred             CCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHH
Q psy11461          9 TNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFL   88 (253)
Q Consensus         9 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l   88 (253)
                      .+|.....+..+|..++..|++++|+..|.+++..+|.++.++.++|.+++.+|++++|+.+|++++.++|++..+++.+
T Consensus       360 l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~l  439 (615)
T TIGR00990       360 LDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQL  439 (615)
T ss_pred             cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHH
Confidence            45677888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCHHHHHHHHHHHHhhchhcccchHH
Q psy11461         89 GQALHEINHYDEAVKHLQRAYDLSREQNLNYGD  121 (253)
Q Consensus        89 g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~  121 (253)
                      |.++..+|++++|+..|+++++..|.+...+..
T Consensus       440 a~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~  472 (615)
T TIGR00990       440 GVTQYKEGSIASSMATFRRCKKNFPEAPDVYNY  472 (615)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHH
Confidence            999999999999999999999998887554433

>PRK12370 invasion protein regulator; Provisional

Probab=99.48  E-value=1.4e-11  Score=112.70  Aligned_cols=111  Identities=14%  Similarity=0.111  Sum_probs=101.6

Q ss_pred             CCCcccHHHHHHHHHHHHhc---------cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhC
Q psy11461          8 TTNNLSDKELKDEGNRYFGL---------RQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELE   78 (253)
Q Consensus         8 ~~~~~~a~~~~~~g~~~~~~---------g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~   78 (253)
                      ..+|..+..+..+|.++...         +++++|+..+.+++.++|+++.++..+|.++...|++++|+..++++++++
T Consensus       289 ~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~  368 (553)
T PRK12370        289 NMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS  368 (553)
T ss_pred             hcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence            35677888888888877633         458999999999999999999999999999999999999999999999999


Q ss_pred             CCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhcccc
Q psy11461         79 PSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLN  118 (253)
Q Consensus        79 p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~~~  118 (253)
                      |+++.+++.+|.++...|++++|+..++++++++|.+...
T Consensus       369 P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~  408 (553)
T PRK12370        369 PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAA  408 (553)
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhh
Confidence            9999999999999999999999999999999999997543

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.47  E-value=2.9e-13  Score=88.89  Aligned_cols=67  Identities=34%  Similarity=0.572  Sum_probs=49.8

Q ss_pred             cHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh-CHHHHHHHHHHHHhhCC
Q psy11461         13 SDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLK-QYVHCCDDCRKALELEP   79 (253)
Q Consensus        13 ~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~-~~~~A~~~~~~al~l~p   79 (253)
                      ++..|..+|..++..|+|++|+.+|++++..+|+++.+++++|.|+..+| ++.+|+.+++++++++|
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            46677777777777777777777777777777777777777777777777 57777777777777766

...

>KOG0551|consensus

Probab=99.44  E-value=5e-12  Score=104.12  Aligned_cols=104  Identities=31%  Similarity=0.515  Sum_probs=96.2

Q ss_pred             ccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHH
Q psy11461         12 LSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPV----IPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFF   87 (253)
Q Consensus        12 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~----~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~   87 (253)
                      ..|.-++..||.||+.++|..|+.+|+++|...-.    ++.+|+|||.|.+.+|+|..|+.+|.+|+.++|.+.+++++
T Consensus        79 E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R  158 (390)
T KOG0551|consen   79 EQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIR  158 (390)
T ss_pred             HHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhh
Confidence            47889999999999999999999999999988433    56789999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461         88 LGQALHEINHYDEAVKHLQRAYDLSREQ  115 (253)
Q Consensus        88 lg~~~~~~~~~~~A~~~~~~al~l~p~~  115 (253)
                      -|.|++++.++.+|+..+...+.++-+.
T Consensus       159 ~Akc~~eLe~~~~a~nw~ee~~~~d~e~  186 (390)
T KOG0551|consen  159 GAKCLLELERFAEAVNWCEEGLQIDDEA  186 (390)
T ss_pred             hhHHHHHHHHHHHHHHHHhhhhhhhHHH
Confidence            9999999999999999999888876554

>PRK12370 invasion protein regulator; Provisional

Probab=99.44  E-value=5.2e-12  Score=115.50  Aligned_cols=110  Identities=11%  Similarity=0.019  Sum_probs=101.8

Q ss_pred             CCCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHH
Q psy11461          8 TTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFF   87 (253)
Q Consensus         8 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~   87 (253)
                      .-+|.++.++..+|..+...|++++|+..|.+++.++|+++.+++++|.++..+|++++|+..+++++.++|.++.+++.
T Consensus       332 ~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~  411 (553)
T PRK12370        332 ELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGIT  411 (553)
T ss_pred             hcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHH
Confidence            45688899999999999999999999999999999999999999999999999999999999999999999999988888


Q ss_pred             HHHHHHHhCCHHHHHHHHHHHHhhc-hhccc
Q psy11461         88 LGQALHEINHYDEAVKHLQRAYDLS-REQNL  117 (253)
Q Consensus        88 lg~~~~~~~~~~~A~~~~~~al~l~-p~~~~  117 (253)
                      ++.+++..|++++|+..+++++... |+++.
T Consensus       412 ~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~  442 (553)
T PRK12370        412 KLWITYYHTGIDDAIRLGDELRSQHLQDNPI  442 (553)
T ss_pred             HHHHHHhccCHHHHHHHHHHHHHhccccCHH
Confidence            8888888999999999999999876 55443

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=99.43  E-value=5.5e-12  Score=91.35  Aligned_cols=102  Identities=18%  Similarity=0.216  Sum_probs=95.8

Q ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCc---HHHHHH
Q psy11461         14 DKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVI---PSYFTNRALCYLKLKQYVHCCDDCRKALELEPSL---VKAQFF   87 (253)
Q Consensus        14 a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~---~~a~~~   87 (253)
                      +..++..|..++..|++++|+..|.+++..+|.+   +.+++.+|.++.+.|+++.|+..++.++..+|++   ..+++.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~   81 (119)
T TIGR02795         2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK   81 (119)
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence            4678999999999999999999999999999876   5789999999999999999999999999999885   678999


Q ss_pred             HHHHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461         88 LGQALHEINHYDEAVKHLQRAYDLSREQ  115 (253)
Q Consensus        88 lg~~~~~~~~~~~A~~~~~~al~l~p~~  115 (253)
                      +|.++..+|++++|+..+.++++..|++
T Consensus        82 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~  109 (119)
T TIGR02795        82 LGMSLQELGDKEKAKATLQQVIKRYPGS  109 (119)
T ss_pred             HHHHHHHhCChHHHHHHHHHHHHHCcCC
Confidence            9999999999999999999999999987

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=99.43  E-value=4.1e-12  Score=86.81  Aligned_cols=99  Identities=34%  Similarity=0.576  Sum_probs=94.8

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHh
Q psy11461         16 ELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEI   95 (253)
Q Consensus        16 ~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~   95 (253)
                      .++.+|..++..|++.+|+..+.+++...|.++.++..+|.++...+++++|+..+.+++.+.|.+..+++.+|.++...
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL   81 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence            47889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHhhchh
Q psy11461         96 NHYDEAVKHLQRAYDLSRE  114 (253)
Q Consensus        96 ~~~~~A~~~~~~al~l~p~  114 (253)
                      |+++.|...+.++++.+|.
T Consensus        82 ~~~~~a~~~~~~~~~~~~~  100 (100)
T cd00189          82 GKYEEALEAYEKALELDPN  100 (100)
T ss_pred             HhHHHHHHHHHHHHccCCC
Confidence            9999999999999988763

>KOG1125|consensus

Probab=99.42  E-value=7.3e-13  Score=115.83  Aligned_cols=117  Identities=21%  Similarity=0.337  Sum_probs=106.5

Q ss_pred             ccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q psy11461         12 LSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQA   91 (253)
Q Consensus        12 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~   91 (253)
                      .++.....+|..|+-.|+|+.|++||+.|+..+|++..+|..+|.++..-.+..+|+..|++|++|.|..++++|++|.+
T Consensus       428 ~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS  507 (579)
T KOG1125|consen  428 IDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGIS  507 (579)
T ss_pred             CChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhh
Confidence            67888899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCHHHHHHHHHHHHhhchhcccc-----hHHHHHHHHH
Q psy11461         92 LHEINHYDEAVKHLQRAYDLSREQNLN-----YGDDIACQLR  128 (253)
Q Consensus        92 ~~~~~~~~~A~~~~~~al~l~p~~~~~-----~~~~~~~~~~  128 (253)
                      +..+|.|.+|+++|..||.+.+.+...     -.+.|+..++
T Consensus       508 ~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR  549 (579)
T KOG1125|consen  508 CMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLR  549 (579)
T ss_pred             hhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHH
Confidence            999999999999999999998874211     1245666655

>KOG0624|consensus

Probab=99.41  E-value=7.6e-12  Score=103.65  Aligned_cols=107  Identities=18%  Similarity=0.256  Sum_probs=103.7

Q ss_pred             CCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHH
Q psy11461          9 TNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFL   88 (253)
Q Consensus         9 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l   88 (253)
                      .+|..+...+.+|+.++..|++..|+..|..|+..+|++..+++.||.+|+.+|+...|+.++.+++++.|+...|...+
T Consensus        33 ~~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQR  112 (504)
T KOG0624|consen   33 ASPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQR  112 (504)
T ss_pred             CCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHh
Confidence            45678889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461         89 GQALHEINHYDEAVKHLQRAYDLSREQ  115 (253)
Q Consensus        89 g~~~~~~~~~~~A~~~~~~al~l~p~~  115 (253)
                      |.+++.+|.+++|+..|+.++..+|++
T Consensus       113 g~vllK~Gele~A~~DF~~vl~~~~s~  139 (504)
T KOG0624|consen  113 GVVLLKQGELEQAEADFDQVLQHEPSN  139 (504)
T ss_pred             chhhhhcccHHHHHHHHHHHHhcCCCc
Confidence            999999999999999999999999976

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.41  E-value=1.2e-11  Score=118.52  Aligned_cols=102  Identities=10%  Similarity=-0.001  Sum_probs=75.8

Q ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q psy11461         14 DKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALH   93 (253)
Q Consensus        14 a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~   93 (253)
                      +..+..+|..+.+.|++++|+..|.+++..+|+++.++.++|.++...|++++|+..++++++++|+++.+++++|.++.
T Consensus       609 ~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~  688 (987)
T PRK09782        609 ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQ  688 (987)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            56677777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HhCCHHHHHHHHHHHHhhchhc
Q psy11461         94 EINHYDEAVKHLQRAYDLSREQ  115 (253)
Q Consensus        94 ~~~~~~~A~~~~~~al~l~p~~  115 (253)
                      .+|++++|+..|+++++++|++
T Consensus       689 ~lGd~~eA~~~l~~Al~l~P~~  710 (987)
T PRK09782        689 RLDDMAATQHYARLVIDDIDNQ  710 (987)
T ss_pred             HCCCHHHHHHHHHHHHhcCCCC
Confidence            7777777777777777777765

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.40  E-value=1.8e-12  Score=85.12  Aligned_cols=67  Identities=25%  Similarity=0.441  Sum_probs=65.1

Q ss_pred             CHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhC-CHHHHHHHHHHHHhhch
Q psy11461         47 IPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEIN-HYDEAVKHLQRAYDLSR  113 (253)
Q Consensus        47 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~~-~~~~A~~~~~~al~l~p  113 (253)
                      ++..|.++|.+++..|+|++|+..|.+++.++|+++.+++++|.++..+| ++++|++.++++++++|
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            57899999999999999999999999999999999999999999999999 79999999999999987

...

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.40  E-value=3.2e-11  Score=94.94  Aligned_cols=131  Identities=13%  Similarity=0.032  Sum_probs=115.2

Q ss_pred             CCCCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhh--CCCcHHH
Q psy11461          7 FTTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALEL--EPSLVKA   84 (253)
Q Consensus         7 ~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l--~p~~~~a   84 (253)
                      ...+|....+|..++..|...|+.+.|-+.|++|++++|.+.++++|.|.-+..+|++++|...|++|+..  -|.-...
T Consensus        62 L~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t  141 (250)
T COG3063          62 LEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDT  141 (250)
T ss_pred             HHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchh
Confidence            44678899999999999999999999999999999999999999999999999999999999999999973  2445689


Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHhhchhcccchHHHHHHHHHHHHHHHHHH
Q psy11461         85 QFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIACQLRIAKKKRWAE  137 (253)
Q Consensus        85 ~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~  137 (253)
                      +-++|.|..+.|+++.|..+|+++++++|+.+..........+.......+..
T Consensus       142 ~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~  194 (250)
T COG3063         142 LENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARL  194 (250)
T ss_pred             hhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHH
Confidence            99999999999999999999999999999998777666666555554444433

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=99.40  E-value=1.1e-11  Score=96.46  Aligned_cols=108  Identities=18%  Similarity=0.173  Sum_probs=96.5

Q ss_pred             CCCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHH
Q psy11461          8 TTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVI---PSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKA   84 (253)
Q Consensus         8 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a   84 (253)
                      ...+..+..++.+|..+...|++++|+.+|.+++...|+.   +.++.++|.++..+|++++|+..+.+++.++|.+..+
T Consensus        29 ~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  108 (172)
T PRK02603         29 NKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSA  108 (172)
T ss_pred             ccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHH
Confidence            3456788899999999999999999999999999887653   5789999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhCC--------------HHHHHHHHHHHHhhchhc
Q psy11461         85 QFFLGQALHEINH--------------YDEAVKHLQRAYDLSREQ  115 (253)
Q Consensus        85 ~~~lg~~~~~~~~--------------~~~A~~~~~~al~l~p~~  115 (253)
                      +..+|.++..+|+              +.+|++++++++.++|++
T Consensus       109 ~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~  153 (172)
T PRK02603        109 LNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN  153 (172)
T ss_pred             HHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence            9999999999887              567777777777777775

>KOG0545|consensus

Probab=99.39  E-value=1.7e-11  Score=97.23  Aligned_cols=104  Identities=33%  Similarity=0.459  Sum_probs=95.4

Q ss_pred             cHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--------CCC----------CHHHHHHHHHHHHHhhCHHHHHHHHHHH
Q psy11461         13 SDKELKDEGNRYFGLRQYEEAINCYTRAIIK--------NPV----------IPSYFTNRALCYLKLKQYVHCCDDCRKA   74 (253)
Q Consensus        13 ~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~--------~p~----------~~~~~~~~a~~~~~~~~~~~A~~~~~~a   74 (253)
                      ....+...||.+|+.|+|.+|+..|..||..        .|.          ...++.|.+.|++..|+|-+++..+..+
T Consensus       177 av~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~sei  256 (329)
T KOG0545|consen  177 AVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEI  256 (329)
T ss_pred             hhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHH
Confidence            4567889999999999999999999999865        333          4468999999999999999999999999


Q ss_pred             HhhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhcc
Q psy11461         75 LELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQN  116 (253)
Q Consensus        75 l~l~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~  116 (253)
                      +..+|.|.+|+|.+|.++...-+..+|...|.++++++|.-.
T Consensus       257 L~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpsla  298 (329)
T KOG0545|consen  257 LRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLA  298 (329)
T ss_pred             HhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhH
Confidence            999999999999999999999999999999999999999853

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.38  E-value=2.1e-11  Score=112.98  Aligned_cols=132  Identities=9%  Similarity=-0.045  Sum_probs=114.2

Q ss_pred             CcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q psy11461         10 NNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLG   89 (253)
Q Consensus        10 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg   89 (253)
                      -+..+.+++.+|....+.|.+++|+..+..++...|++..++.++|.++.+++++++|...+++++..+|++..+++.+|
T Consensus        82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a  161 (694)
T PRK15179         82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEA  161 (694)
T ss_pred             ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHH
Confidence            35668899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCHHHHHHHHHHHHhhchhcccchHHHHHHHHHHHHHHHHHHHHHH
Q psy11461         90 QALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIACQLRIAKKKRWAETEEK  141 (253)
Q Consensus        90 ~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (253)
                      .++.++|++++|+..|++++..+|++...+..........+....+....++
T Consensus       162 ~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~  213 (694)
T PRK15179        162 KSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQA  213 (694)
T ss_pred             HHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            9999999999999999999998888766555555444444444444433333

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.38  E-value=4.8e-11  Score=95.67  Aligned_cols=104  Identities=21%  Similarity=0.227  Sum_probs=98.4

Q ss_pred             CCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHH
Q psy11461          9 TNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFL   88 (253)
Q Consensus         9 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l   88 (253)
                      .....+..+..+|..++..|++++|+..+.+++..+|.+..++..+|.++..+|++++|+..+.+++.++|.+..+++.+
T Consensus        26 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~  105 (234)
T TIGR02521        26 DRNKAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNY  105 (234)
T ss_pred             cCCcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence            33456789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCHHHHHHHHHHHHhhc
Q psy11461         89 GQALHEINHYDEAVKHLQRAYDLS  112 (253)
Q Consensus        89 g~~~~~~~~~~~A~~~~~~al~l~  112 (253)
                      |.++...|++++|+..+.+++...
T Consensus       106 ~~~~~~~g~~~~A~~~~~~~~~~~  129 (234)
T TIGR02521       106 GTFLCQQGKYEQAMQQFEQAIEDP  129 (234)
T ss_pred             HHHHHHcccHHHHHHHHHHHHhcc
Confidence            999999999999999999999854

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK15331 chaperone protein SicA; Provisional

Probab=99.37  E-value=1.2e-11  Score=93.31  Aligned_cols=106  Identities=17%  Similarity=0.160  Sum_probs=100.7

Q ss_pred             CCCCCCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHH
Q psy11461          5 HNFTTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKA   84 (253)
Q Consensus         5 ~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a   84 (253)
                      .+..-++..-...+..|..++..|++++|...|+-....+|.++.++..+|.|+..+++|++|+..|..|..++++++..
T Consensus        28 ~l~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p  107 (165)
T PRK15331         28 DVHGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRP  107 (165)
T ss_pred             HHhCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCc
Confidence            34555667788899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHh
Q psy11461         85 QFFLGQALHEINHYDEAVKHLQRAYD  110 (253)
Q Consensus        85 ~~~lg~~~~~~~~~~~A~~~~~~al~  110 (253)
                      .++.|.|++.+|+...|..+|..++.
T Consensus       108 ~f~agqC~l~l~~~~~A~~~f~~a~~  133 (165)
T PRK15331        108 VFFTGQCQLLMRKAAKARQCFELVNE  133 (165)
T ss_pred             cchHHHHHHHhCCHHHHHHHHHHHHh
Confidence            99999999999999999999999998

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.37  E-value=4.2e-11  Score=111.50  Aligned_cols=108  Identities=15%  Similarity=0.106  Sum_probs=90.9

Q ss_pred             CCcccHHHHHHHHHHHHhccCHHH----HHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHH
Q psy11461          9 TNNLSDKELKDEGNRYFGLRQYEE----AINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKA   84 (253)
Q Consensus         9 ~~~~~a~~~~~~g~~~~~~g~~~~----A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a   84 (253)
                      ..|..+..+..+|..++..|++++    |+..|.+++..+|+++.++.++|.++..+|++++|+..+++++.++|++..+
T Consensus       241 ~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a  320 (656)
T PRK15174        241 RGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYV  320 (656)
T ss_pred             cCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH
Confidence            346667788888888888888875    7888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHhhchhcc
Q psy11461         85 QFFLGQALHEINHYDEAVKHLQRAYDLSREQN  116 (253)
Q Consensus        85 ~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~  116 (253)
                      +..+|.++...|++++|+..|++++..+|++.
T Consensus       321 ~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~  352 (656)
T PRK15174        321 RAMYARALRQVGQYTAASDEFVQLAREKGVTS  352 (656)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCccch
Confidence            88888888888888888888888888888754

>KOG0547|consensus

Probab=99.37  E-value=2.1e-11  Score=105.09  Aligned_cols=146  Identities=23%  Similarity=0.236  Sum_probs=126.4

Q ss_pred             cHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q psy11461         13 SDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQAL   92 (253)
Q Consensus        13 ~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~   92 (253)
                      -+.++...|..+|-.|++..|-..+.++|.++|.+..+|..||.+|...++..+...+|.+|..+||+|+..|+.+|+.+
T Consensus       325 ~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~  404 (606)
T KOG0547|consen  325 MAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMR  404 (606)
T ss_pred             HHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHH
Confidence            47889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhCCHHHHHHHHHHHHhhchhcccchHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Q psy11461         93 HEINHYDEAVKHLQRAYDLSREQNLNYGDDIACQLRIAKKKRWAETEEKRIA---QEIELLTYLNRLIT  158 (253)
Q Consensus        93 ~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~l~~  158 (253)
                      +-++++++|+..|+++++++|++..++.+......+..+-.......++.+.   .-||...++-+++.
T Consensus       405 flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLt  473 (606)
T KOG0547|consen  405 FLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILT  473 (606)
T ss_pred             HHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHh
Confidence            9999999999999999999999988887777777777655555444444443   45556666655554

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.36  E-value=5.2e-11  Score=100.62  Aligned_cols=103  Identities=13%  Similarity=0.124  Sum_probs=88.1

Q ss_pred             CCCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHH
Q psy11461          8 TTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFF   87 (253)
Q Consensus         8 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~   87 (253)
                      ..+|..+.++..+|..+...|++++|+..|.+++.++|++..++.++|.++...|++++|+.++++++.++|+++.....
T Consensus        92 ~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~  171 (296)
T PRK11189         92 ALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALW  171 (296)
T ss_pred             HcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            34678899999999999999999999999999999999999999999999999999999999999999999998743222


Q ss_pred             HHHHHHHhCCHHHHHHHHHHHHhh
Q psy11461         88 LGQALHEINHYDEAVKHLQRAYDL  111 (253)
Q Consensus        88 lg~~~~~~~~~~~A~~~~~~al~l  111 (253)
                      + .+....+++++|+..|.++...
T Consensus       172 ~-~l~~~~~~~~~A~~~l~~~~~~  194 (296)
T PRK11189        172 L-YLAESKLDPKQAKENLKQRYEK  194 (296)
T ss_pred             H-HHHHccCCHHHHHHHHHHHHhh
Confidence            2 2334567788888888665543

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.35  E-value=2.2e-11  Score=116.80  Aligned_cols=137  Identities=20%  Similarity=0.094  Sum_probs=113.9

Q ss_pred             cccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q psy11461         11 NLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQ   90 (253)
Q Consensus        11 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~   90 (253)
                      |.....+..++......|++++|+..|.+++..+|+ +.++.++|.++.++|++++|+..+++++.++|+++.++.++|.
T Consensus       573 P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~  651 (987)
T PRK09782        573 LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGY  651 (987)
T ss_pred             CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            344445555566666779999999999999999996 8999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCHHHHHHHHHHHHhhchhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11461         91 ALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIACQLRIAKKKRWAETEEKRIAQEIE  148 (253)
Q Consensus        91 ~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (253)
                      ++...|++++|+..|+++++++|+++..+....................++.+...|+
T Consensus       652 aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~  709 (987)
T PRK09782        652 ALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDN  709 (987)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence            9999999999999999999999998776666666666655555555555555555554

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.35  E-value=1.6e-10  Score=92.64  Aligned_cols=108  Identities=19%  Similarity=0.197  Sum_probs=100.2

Q ss_pred             CCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhC--CCcHHHHH
Q psy11461          9 TNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELE--PSLVKAQF   86 (253)
Q Consensus         9 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~--p~~~~a~~   86 (253)
                      ..|..+..+..+|..++..|++++|+..|.+++..+|.++.++.++|.++...|++++|+..+.+++...  +.....++
T Consensus        60 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~  139 (234)
T TIGR02521        60 HDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLE  139 (234)
T ss_pred             hCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHH
Confidence            3567788999999999999999999999999999999999999999999999999999999999999854  55678899


Q ss_pred             HHHHHHHHhCCHHHHHHHHHHHHhhchhcc
Q psy11461         87 FLGQALHEINHYDEAVKHLQRAYDLSREQN  116 (253)
Q Consensus        87 ~lg~~~~~~~~~~~A~~~~~~al~l~p~~~  116 (253)
                      .+|.++...|++++|...+.+++..+|++.
T Consensus       140 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  169 (234)
T TIGR02521       140 NAGLCALKAGDFDKAEKYLTRALQIDPQRP  169 (234)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCcCCh
Confidence            999999999999999999999999998864

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG1126|consensus

Probab=99.35  E-value=4.6e-12  Score=112.47  Aligned_cols=129  Identities=15%  Similarity=0.204  Sum_probs=114.7

Q ss_pred             CCCCCCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHH
Q psy11461          5 HNFTTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKA   84 (253)
Q Consensus         5 ~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a   84 (253)
                      +..+-+|..+-+|..+|..+.....|+.|..+|++|+..+|.+..+|+.+|.+|.++++++.|.-.|++|+.++|.|...
T Consensus       446 RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi  525 (638)
T KOG1126|consen  446 RAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVI  525 (638)
T ss_pred             HhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhH
Confidence            34556788888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHhhchhcccchHHHHHHHHHHHHHH
Q psy11461         85 QFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIACQLRIAKKK  133 (253)
Q Consensus        85 ~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~  133 (253)
                      ...+|..+.++|+.++|+..|++|+.++|.++......+.......+..
T Consensus       526 ~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~  574 (638)
T KOG1126|consen  526 LCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYV  574 (638)
T ss_pred             HhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchH
Confidence            9999999999999999999999999999998765544444444443333

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.34  E-value=1.2e-11  Score=93.34  Aligned_cols=89  Identities=13%  Similarity=0.149  Sum_probs=84.0

Q ss_pred             CCCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHH
Q psy11461          8 TTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFF   87 (253)
Q Consensus         8 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~   87 (253)
                      ..+|..+..+..+|..+...|++++|+.+|.+++..+|.++.+++++|.|+..+|++++|+..|.+++.++|+++.++..
T Consensus        52 ~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~  131 (144)
T PRK15359         52 MAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEI  131 (144)
T ss_pred             HcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHH
Confidence            35688899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhC
Q psy11461         88 LGQALHEIN   96 (253)
Q Consensus        88 lg~~~~~~~   96 (253)
                      +|.+...++
T Consensus       132 ~~~~~~~l~  140 (144)
T PRK15359        132 RQNAQIMVD  140 (144)
T ss_pred             HHHHHHHHH
Confidence            998876543

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=99.34  E-value=4.1e-12  Score=86.84  Aligned_cols=81  Identities=31%  Similarity=0.591  Sum_probs=73.9

Q ss_pred             ccCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhCCHHHHHHH
Q psy11461         27 LRQYEEAINCYTRAIIKNPV--IPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKH  104 (253)
Q Consensus        27 ~g~~~~A~~~y~~ai~~~p~--~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~~~~~~A~~~  104 (253)
                      +|+|+.|+..|.+++..+|.  +..++.++|.||+++|+|++|+..+++ +..+|.+...++.+|.|+..+|++++|+..
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~   80 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA   80 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence            68999999999999999995  467788899999999999999999999 889999999999999999999999999999


Q ss_pred             HHHH
Q psy11461        105 LQRA  108 (253)
Q Consensus       105 ~~~a  108 (253)
                      |.++
T Consensus        81 l~~~   84 (84)
T PF12895_consen   81 LEKA   84 (84)
T ss_dssp             HHHH
T ss_pred             HhcC
Confidence            9875

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.34  E-value=3.3e-11  Score=95.75  Aligned_cols=110  Identities=15%  Similarity=0.069  Sum_probs=95.2

Q ss_pred             ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH-HHhCC--HHHHHH
Q psy11461         27 LRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQAL-HEINH--YDEAVK  103 (253)
Q Consensus        27 ~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~-~~~~~--~~~A~~  103 (253)
                      .++.++++..+.+++..+|+++..|..+|.+|...|++++|+..|++++.++|++..++..+|.++ ...|+  +++|..
T Consensus        52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~  131 (198)
T PRK10370         52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE  131 (198)
T ss_pred             chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence            567789999999999999999999999999999999999999999999999999999999999985 67777  599999


Q ss_pred             HHHHHHhhchhcccchHHHHHHHHHHHHHHHHH
Q psy11461        104 HLQRAYDLSREQNLNYGDDIACQLRIAKKKRWA  136 (253)
Q Consensus       104 ~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~  136 (253)
                      .++++++++|++...+...............+.
T Consensus       132 ~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai  164 (198)
T PRK10370        132 MIDKALALDANEVTALMLLASDAFMQADYAQAI  164 (198)
T ss_pred             HHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHH
Confidence            999999999998766655555555444444333

>KOG1155|consensus

Probab=99.32  E-value=3.4e-11  Score=103.16  Aligned_cols=108  Identities=22%  Similarity=0.231  Sum_probs=97.7

Q ss_pred             CcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q psy11461         10 NNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLG   89 (253)
Q Consensus        10 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg   89 (253)
                      +.-.+...+-.||.|.-+++.+.|+.+|++|+++||....+|+.+|.-|..+++...|+..|++|++++|.+.+|||.+|
T Consensus       326 dKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLG  405 (559)
T KOG1155|consen  326 DKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLG  405 (559)
T ss_pred             ccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhh
Confidence            44455666778999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCHHHHHHHHHHHHhhchhccc
Q psy11461         90 QALHEINHYDEAVKHLQRAYDLSREQNL  117 (253)
Q Consensus        90 ~~~~~~~~~~~A~~~~~~al~l~p~~~~  117 (253)
                      ++|--++.+.=|+-+|++|+++-|+++.
T Consensus       406 QaYeim~Mh~YaLyYfqkA~~~kPnDsR  433 (559)
T KOG1155|consen  406 QAYEIMKMHFYALYYFQKALELKPNDSR  433 (559)
T ss_pred             HHHHHhcchHHHHHHHHHHHhcCCCchH
Confidence            9999999999999999999999998843

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=99.31  E-value=9.4e-11  Score=96.09  Aligned_cols=108  Identities=22%  Similarity=0.199  Sum_probs=102.8

Q ss_pred             CCCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh---CHHHHHHHHHHHHhhCCCcHHH
Q psy11461          8 TTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLK---QYVHCCDDCRKALELEPSLVKA   84 (253)
Q Consensus         8 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~---~~~~A~~~~~~al~l~p~~~~a   84 (253)
                      ..+|.++..|..+|.+|+..|++..|...|.+|+++.|+++..+..+|.+++.+.   ...++...+++++.+||.++.+
T Consensus       150 ~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~ira  229 (287)
T COG4235         150 QQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRA  229 (287)
T ss_pred             HhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHH
Confidence            3678999999999999999999999999999999999999999999999998765   4788999999999999999999


Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461         85 QFFLGQALHEINHYDEAVKHLQRAYDLSREQ  115 (253)
Q Consensus        85 ~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~  115 (253)
                      .+.||..+++.|+|.+|+..++..+...|.+
T Consensus       230 l~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~  260 (287)
T COG4235         230 LSLLAFAAFEQGDYAEAAAAWQMLLDLLPAD  260 (287)
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHhcCCCC
Confidence            9999999999999999999999999999886

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.31  E-value=2.6e-10  Score=92.98  Aligned_cols=109  Identities=18%  Similarity=0.248  Sum_probs=100.9

Q ss_pred             CCCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHH-
Q psy11461          8 TTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIP---SYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVK-   83 (253)
Q Consensus         8 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~---~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~-   83 (253)
                      +..+..+..++.+|..++..|+|+.|+..|.+++..+|.++   .+++.+|.++...|++++|+..++++++.+|+++. 
T Consensus        27 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~  106 (235)
T TIGR03302        27 PVEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDA  106 (235)
T ss_pred             CcccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCch
Confidence            45677899999999999999999999999999999999876   57899999999999999999999999999998776 


Q ss_pred             --HHHHHHHHHHHh--------CCHHHHHHHHHHHHhhchhcc
Q psy11461         84 --AQFFLGQALHEI--------NHYDEAVKHLQRAYDLSREQN  116 (253)
Q Consensus        84 --a~~~lg~~~~~~--------~~~~~A~~~~~~al~l~p~~~  116 (253)
                        +++.+|.++...        |++++|+..|.+++...|++.
T Consensus       107 ~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~  149 (235)
T TIGR03302       107 DYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSE  149 (235)
T ss_pred             HHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCCh
Confidence              799999999987        889999999999999999974

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG1155|consensus

Probab=99.31  E-value=1.2e-10  Score=99.76  Aligned_cols=107  Identities=25%  Similarity=0.272  Sum_probs=102.5

Q ss_pred             CCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHH
Q psy11461          9 TNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFL   88 (253)
Q Consensus         9 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l   88 (253)
                      -+|....+|..+|..|+..++...|++.|+.|+.++|.+..+|+.+|++|--++.+.=|+-.|++|+.+.|++...|..+
T Consensus       359 LNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aL  438 (559)
T KOG1155|consen  359 LNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVAL  438 (559)
T ss_pred             cCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHH
Confidence            46778889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461         89 GQALHEINHYDEAVKHLQRAYDLSREQ  115 (253)
Q Consensus        89 g~~~~~~~~~~~A~~~~~~al~l~p~~  115 (253)
                      |.||.++++.++|+++|.+|+..+-.+
T Consensus       439 G~CY~kl~~~~eAiKCykrai~~~dte  465 (559)
T KOG1155|consen  439 GECYEKLNRLEEAIKCYKRAILLGDTE  465 (559)
T ss_pred             HHHHHHhccHHHHHHHHHHHHhccccc
Confidence            999999999999999999999886553

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=99.29  E-value=1e-10  Score=90.58  Aligned_cols=105  Identities=18%  Similarity=0.104  Sum_probs=90.4

Q ss_pred             cccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHH
Q psy11461         11 NLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPV---IPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFF   87 (253)
Q Consensus        11 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~   87 (253)
                      ...+..++..|..+...|+|++|+..|.+++.+.|+   .+.++.++|.++..+|++++|+..+.+++.++|.+..++..
T Consensus        32 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~  111 (168)
T CHL00033         32 EKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNN  111 (168)
T ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHH
Confidence            446788899999999999999999999999988766   34589999999999999999999999999999999999999


Q ss_pred             HHHHHH-------HhCCHH-------HHHHHHHHHHhhchhc
Q psy11461         88 LGQALH-------EINHYD-------EAVKHLQRAYDLSREQ  115 (253)
Q Consensus        88 lg~~~~-------~~~~~~-------~A~~~~~~al~l~p~~  115 (253)
                      +|.++.       .+|+++       +|+..|++++..+|.+
T Consensus       112 la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~  153 (168)
T CHL00033        112 MAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGN  153 (168)
T ss_pred             HHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCccc
Confidence            999998       777776       4555555666666654

>KOG0376|consensus

Probab=99.28  E-value=7.5e-12  Score=107.87  Aligned_cols=103  Identities=31%  Similarity=0.511  Sum_probs=100.2

Q ss_pred             cHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q psy11461         13 SDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQAL   92 (253)
Q Consensus        13 ~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~   92 (253)
                      .+..+...|+.++.-++|+.|+..|++||.++|+++.++.+|+.++++.+++..|+.++.+|++++|...++|++.|.++
T Consensus         3 ~a~e~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~   82 (476)
T KOG0376|consen    3 SAEELKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAV   82 (476)
T ss_pred             hhhhhhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHH
Confidence            36678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhCCHHHHHHHHHHHHhhchhc
Q psy11461         93 HEINHYDEAVKHLQRAYDLSREQ  115 (253)
Q Consensus        93 ~~~~~~~~A~~~~~~al~l~p~~  115 (253)
                      ..++.+.+|...|++...+.|+.
T Consensus        83 m~l~~~~~A~~~l~~~~~l~Pnd  105 (476)
T KOG0376|consen   83 MALGEFKKALLDLEKVKKLAPND  105 (476)
T ss_pred             HhHHHHHHHHHHHHHhhhcCcCc
Confidence            99999999999999999999997

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.27  E-value=2.2e-10  Score=106.69  Aligned_cols=109  Identities=15%  Similarity=0.083  Sum_probs=103.8

Q ss_pred             CCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHH
Q psy11461          9 TNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFL   88 (253)
Q Consensus         9 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l   88 (253)
                      ..|..+..+..+|..+...|++++|+..|++++..+|.++.++.++|.++...|++++|+..+++++..+|++...+..+
T Consensus       279 l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~  358 (656)
T PRK15174        279 FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYA  358 (656)
T ss_pred             hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHH
Confidence            45778899999999999999999999999999999999999999999999999999999999999999999998888888


Q ss_pred             HHHHHHhCCHHHHHHHHHHHHhhchhccc
Q psy11461         89 GQALHEINHYDEAVKHLQRAYDLSREQNL  117 (253)
Q Consensus        89 g~~~~~~~~~~~A~~~~~~al~l~p~~~~  117 (253)
                      |.++...|++++|+..|+++++.+|++..
T Consensus       359 a~al~~~G~~deA~~~l~~al~~~P~~~~  387 (656)
T PRK15174        359 AAALLQAGKTSEAESVFEHYIQARASHLP  387 (656)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhChhhch
Confidence            99999999999999999999999998754

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.25  E-value=3.3e-11  Score=100.95  Aligned_cols=107  Identities=20%  Similarity=0.232  Sum_probs=64.4

Q ss_pred             cccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q psy11461         11 NLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQ   90 (253)
Q Consensus        11 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~   90 (253)
                      +.++..|...|..+.+.|++++|+.+|++++..+|+++.+...++.++...|+++++...+.......|.++..+..+|.
T Consensus       143 ~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~  222 (280)
T PF13429_consen  143 PDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAA  222 (280)
T ss_dssp             -T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHH
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence            34555666666666666666666666666666666666666666666666666666666666655555666666666666


Q ss_pred             HHHHhCCHHHHHHHHHHHHhhchhccc
Q psy11461         91 ALHEINHYDEAVKHLQRAYDLSREQNL  117 (253)
Q Consensus        91 ~~~~~~~~~~A~~~~~~al~l~p~~~~  117 (253)
                      ++..+|++++|+..|+++++.+|+++.
T Consensus       223 ~~~~lg~~~~Al~~~~~~~~~~p~d~~  249 (280)
T PF13429_consen  223 AYLQLGRYEEALEYLEKALKLNPDDPL  249 (280)
T ss_dssp             HHHHHT-HHHHHHHHHHHHHHSTT-HH
T ss_pred             Hhccccccccccccccccccccccccc
Confidence            666666666666666666666666543

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.25  E-value=1.9e-10  Score=92.18  Aligned_cols=109  Identities=18%  Similarity=0.143  Sum_probs=99.5

Q ss_pred             CCCCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHH
Q psy11461          7 FTTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQF   86 (253)
Q Consensus         7 ~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~   86 (253)
                      ...++.+...+..+|...++.|+|..|+..+.++....|++..+|+.+|.+|-+.|++++|...|.+++++.|+.+.+..
T Consensus        93 ~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~n  172 (257)
T COG5010          93 AIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIAN  172 (257)
T ss_pred             hccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhh
Confidence            33556677777789999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461         87 FLGQALHEINHYDEAVKHLQRAYDLSREQ  115 (253)
Q Consensus        87 ~lg~~~~~~~~~~~A~~~~~~al~l~p~~  115 (253)
                      ++|..+.-.|+++.|..++..+....+.+
T Consensus       173 Nlgms~~L~gd~~~A~~lll~a~l~~~ad  201 (257)
T COG5010         173 NLGMSLLLRGDLEDAETLLLPAYLSPAAD  201 (257)
T ss_pred             hHHHHHHHcCCHHHHHHHHHHHHhCCCCc
Confidence            99999999999999999999998776655

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=99.25  E-value=3.3e-11  Score=78.06  Aligned_cols=62  Identities=26%  Similarity=0.396  Sum_probs=31.7

Q ss_pred             HHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461         54 RALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQ  115 (253)
Q Consensus        54 ~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~  115 (253)
                      +|..++..|++++|+..|++++..+|+++.+++.+|.++..+|++++|+..|+++++++|++
T Consensus         3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~   64 (65)
T PF13432_consen    3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN   64 (65)
T ss_dssp             HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence            44555555555555555555555555555555555555555555555555555555555543

>PLN02789 farnesyltranstransferase

Probab=99.23  E-value=3.2e-10  Score=96.38  Aligned_cols=117  Identities=14%  Similarity=0.054  Sum_probs=105.3

Q ss_pred             CCCCcccHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCH--HHHHHHHHHHHhhCCCcHH
Q psy11461          7 FTTNNLSDKELKDEGNRYFGLR-QYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQY--VHCCDDCRKALELEPSLVK   83 (253)
Q Consensus         7 ~~~~~~~a~~~~~~g~~~~~~g-~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~--~~A~~~~~~al~l~p~~~~   83 (253)
                      ...+|....+|..+|.++...| ++.+++.++.+++..+|.+..+|.+++.++.+++..  .+++..+.++++++|+|..
T Consensus        64 I~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~  143 (320)
T PLN02789         64 IRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYH  143 (320)
T ss_pred             HHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHH
Confidence            3457888999999999999998 689999999999999999999999999999998874  7889999999999999999


Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHhhchhcccchHHHH
Q psy11461         84 AQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNYGDDI  123 (253)
Q Consensus        84 a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~  123 (253)
                      +|..+|.++..+|++++|++++.++++.+|.+..++....
T Consensus       144 AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~  183 (320)
T PLN02789        144 AWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRY  183 (320)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHH
Confidence            9999999999999999999999999999999866555443

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=99.22  E-value=6.4e-11  Score=76.70  Aligned_cols=65  Identities=20%  Similarity=0.292  Sum_probs=60.9

Q ss_pred             HHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcH
Q psy11461         18 KDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLV   82 (253)
Q Consensus        18 ~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~   82 (253)
                      +.+|..++..|+|++|+.+|++++..+|.++.++..+|.|+..+|++++|+..++++++++|+++
T Consensus         1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            46899999999999999999999999999999999999999999999999999999999999875

>KOG0624|consensus

Probab=99.22  E-value=6.1e-10  Score=92.52  Aligned_cols=181  Identities=14%  Similarity=0.216  Sum_probs=105.5

Q ss_pred             HhccCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhCCHHH
Q psy11461         25 FGLRQYEEAINCYTRAIIKNPVIPS----YFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDE  100 (253)
Q Consensus        25 ~~~g~~~~A~~~y~~ai~~~p~~~~----~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~~~~~~  100 (253)
                      ...++|.++++.+.+.+..+|..+.    .+..+..|+..-+++.+|++-|.+++.++|+++.++.-+|.+|+.-..|+.
T Consensus       280 ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~  359 (504)
T KOG0624|consen  280 IEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDD  359 (504)
T ss_pred             HhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHH
Confidence            3334444444444444444444222    233457788888899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhchhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccch
Q psy11461        101 AVKHLQRAYDLSREQNLNYGDDIACQLRIAKKKRWAETEEKRIAQEIELLTYLNRLITEDAEKELGSIRRDAETKRLDGD  180 (253)
Q Consensus       101 A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~  180 (253)
                      |+..|++|.++++++     ..+...+.++++..-....+.-.+...--+..-++-|.+...+-..+.+++.-..+    
T Consensus       360 AI~dye~A~e~n~sn-----~~~reGle~Akrlkkqs~kRDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDNFqdE----  430 (504)
T KOG0624|consen  360 AIHDYEKALELNESN-----TRAREGLERAKRLKKQSGKRDYYKILGVKRNASKQEITKAYRKLAQKWHPDNFQDE----  430 (504)
T ss_pred             HHHHHHHHHhcCccc-----HHHHHHHHHHHHHHHHhccchHHHHhhhcccccHHHHHHHHHHHHHhcCCccccCH----
Confidence            999999999999887     23333333333322111100000000000000112223333333444444332111    


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchh----cCCCCCCCC
Q psy11461        181 AVQEAVMRIEARRDRSMAELNDLFVAIDERRRK----VGHFDPVTR  222 (253)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~----~g~~DP~tr  222 (253)
                             +..+.+++++.++...-++++++.+.    +|. ||+--
T Consensus       431 -------eEKKkAEKKFIDIAAAKEVLsd~EkRrqFDnGe-DPLD~  468 (504)
T KOG0624|consen  431 -------EEKKKAEKKFIDIAAAKEVLSDPEKRRQFDNGE-DPLDP  468 (504)
T ss_pred             -------HHHHHHHHhhhhHHHHHHhhcCHHHHhhccCCC-CCCCh
Confidence                   13567888999988888888766654    553 55543

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.22  E-value=2.1e-10  Score=85.26  Aligned_cols=87  Identities=11%  Similarity=0.048  Sum_probs=81.3

Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchh
Q psy11461         35 NCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSRE  114 (253)
Q Consensus        35 ~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~  114 (253)
                      +.|.+++..+|.+......+|.++...|++++|+..+++++.++|.+..+++.+|.++..+|++++|+..+.+++.++|.
T Consensus         4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~   83 (135)
T TIGR02552         4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD   83 (135)
T ss_pred             hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            46889999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             cccchHH
Q psy11461        115 QNLNYGD  121 (253)
Q Consensus       115 ~~~~~~~  121 (253)
                      +...+..
T Consensus        84 ~~~~~~~   90 (135)
T TIGR02552        84 DPRPYFH   90 (135)
T ss_pred             ChHHHHH
Confidence            7554433

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.20  E-value=4.8e-10  Score=91.38  Aligned_cols=109  Identities=15%  Similarity=0.218  Sum_probs=96.5

Q ss_pred             CCCCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHh--------hCHHHHHHHHHHHH
Q psy11461          7 FTTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPS---YFTNRALCYLKL--------KQYVHCCDDCRKAL   75 (253)
Q Consensus         7 ~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~---~~~~~a~~~~~~--------~~~~~A~~~~~~al   75 (253)
                      .+.++....+++.+|..++..|++++|+..|.+++..+|+++.   +++.+|.++...        |++++|+..+.+++
T Consensus        63 ~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~  142 (235)
T TIGR03302        63 YPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELI  142 (235)
T ss_pred             CCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHH
Confidence            3455555678999999999999999999999999999998776   789999999987        89999999999999


Q ss_pred             hhCCCcHHHH-----------------HHHHHHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461         76 ELEPSLVKAQ-----------------FFLGQALHEINHYDEAVKHLQRAYDLSREQ  115 (253)
Q Consensus        76 ~l~p~~~~a~-----------------~~lg~~~~~~~~~~~A~~~~~~al~l~p~~  115 (253)
                      ..+|++..++                 +.+|.+++..|++.+|+..+.+++...|+.
T Consensus       143 ~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~  199 (235)
T TIGR03302       143 RRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDT  199 (235)
T ss_pred             HHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCC
Confidence            9999986542                 467888999999999999999999998875

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=99.20  E-value=6.7e-10  Score=91.77  Aligned_cols=103  Identities=11%  Similarity=0.018  Sum_probs=95.2

Q ss_pred             cHHHHHHHHHHH-HhccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCC---cHHHH
Q psy11461         13 SDKELKDEGNRY-FGLRQYEEAINCYTRAIIKNPVI---PSYFTNRALCYLKLKQYVHCCDDCRKALELEPS---LVKAQ   85 (253)
Q Consensus        13 ~a~~~~~~g~~~-~~~g~~~~A~~~y~~ai~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~---~~~a~   85 (253)
                      .....+..|..+ +..|+|++|+..|...+..+|++   +.+++.+|.+|+..|++++|+..|.+++...|+   .+.++
T Consensus       141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl  220 (263)
T PRK10803        141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAM  220 (263)
T ss_pred             CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHH
Confidence            457788888887 66899999999999999999998   579999999999999999999999999998887   46789


Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461         86 FFLGQALHEINHYDEAVKHLQRAYDLSREQ  115 (253)
Q Consensus        86 ~~lg~~~~~~~~~~~A~~~~~~al~l~p~~  115 (253)
                      +.+|.++..+|++++|...|+++++..|++
T Consensus       221 ~klg~~~~~~g~~~~A~~~~~~vi~~yP~s  250 (263)
T PRK10803        221 FKVGVIMQDKGDTAKAKAVYQQVIKKYPGT  250 (263)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence            999999999999999999999999999986

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.20  E-value=7.1e-10  Score=102.93  Aligned_cols=108  Identities=10%  Similarity=-0.099  Sum_probs=103.7

Q ss_pred             CCCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHH
Q psy11461          8 TTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFF   87 (253)
Q Consensus         8 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~   87 (253)
                      .-.|+...++..++..+.+.+++++|...+.+++..+|+++.+++.+|.++.++|++++|+..|++++..+|++..++..
T Consensus       114 ~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~  193 (694)
T PRK15179        114 QRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVG  193 (694)
T ss_pred             hhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHH
Confidence            45688999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461         88 LGQALHEINHYDEAVKHLQRAYDLSREQ  115 (253)
Q Consensus        88 lg~~~~~~~~~~~A~~~~~~al~l~p~~  115 (253)
                      +|.++...|+.++|...|++|+......
T Consensus       194 ~a~~l~~~G~~~~A~~~~~~a~~~~~~~  221 (694)
T PRK15179        194 WAQSLTRRGALWRARDVLQAGLDAIGDG  221 (694)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhhCcc
Confidence            9999999999999999999999986654

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.19  E-value=5.7e-10  Score=106.33  Aligned_cols=116  Identities=19%  Similarity=0.162  Sum_probs=104.5

Q ss_pred             CCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHH
Q psy11461          9 TNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFL   88 (253)
Q Consensus         9 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l   88 (253)
                      ..+..+..+..+|..++..|++++|+..|.+++..+|.++.++..+|.++...|++++|+..+.+++..+|.+..+++.+
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~  199 (899)
T TIGR02917       120 DDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLK  199 (899)
T ss_pred             CchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHH
Confidence            45667788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCHHHHHHHHHHHHhhchhcccchHHHHH
Q psy11461         89 GQALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIA  124 (253)
Q Consensus        89 g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~  124 (253)
                      |.++...|++++|+..|++++..+|.+.......+.
T Consensus       200 ~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~  235 (899)
T TIGR02917       200 GDLLLSLGNIELALAAYRKAIALRPNNPAVLLALAT  235 (899)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence            999999999999999999999999987554433333

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.18  E-value=8e-10  Score=105.33  Aligned_cols=132  Identities=14%  Similarity=0.038  Sum_probs=97.5

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q psy11461         15 KELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHE   94 (253)
Q Consensus        15 ~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~   94 (253)
                      ..+..+|..+...|++.+|+..+.+++..+|.++.++.++|.+|..+|++++|+..|++++..+|+++.++..+|.++..
T Consensus       737 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~  816 (899)
T TIGR02917       737 QNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLE  816 (899)
T ss_pred             hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence            55677888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             hCCHHHHHHHHHHHHhhchhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11461         95 INHYDEAVKHLQRAYDLSREQNLNYGDDIACQLRIAKKKRWAETEEKRIAQEI  147 (253)
Q Consensus        95 ~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (253)
                      .|+ .+|+..+++++.+.|+++..+...........+........++.+...|
T Consensus       817 ~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~  868 (899)
T TIGR02917       817 LKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAP  868 (899)
T ss_pred             cCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            888 7788888888888877755444444444444444445555555554433

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>KOG4555|consensus

Probab=99.16  E-value=2.9e-09  Score=76.85  Aligned_cols=102  Identities=22%  Similarity=0.191  Sum_probs=92.8

Q ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcH----HHHHHHH
Q psy11461         14 DKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLV----KAQFFLG   89 (253)
Q Consensus        14 a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~----~a~~~lg   89 (253)
                      +..+-..|..+...|+.+.|++.|.+++.+.|..+.+|+|+|.++.-+|+.++|+.++.+|+++.....    .++..+|
T Consensus        43 S~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg  122 (175)
T KOG4555|consen   43 SRELELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRG  122 (175)
T ss_pred             HHHHHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHH
Confidence            446667888889999999999999999999999999999999999999999999999999999975433    4688999


Q ss_pred             HHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461         90 QALHEINHYDEAVKHLQRAYDLSREQ  115 (253)
Q Consensus        90 ~~~~~~~~~~~A~~~~~~al~l~p~~  115 (253)
                      .+|..+|+.+.|...|..|-+++...
T Consensus       123 ~lyRl~g~dd~AR~DFe~AA~LGS~F  148 (175)
T KOG4555|consen  123 LLYRLLGNDDAARADFEAAAQLGSKF  148 (175)
T ss_pred             HHHHHhCchHHHHHhHHHHHHhCCHH
Confidence            99999999999999999999998664

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.15  E-value=1.9e-09  Score=94.27  Aligned_cols=106  Identities=19%  Similarity=0.215  Sum_probs=95.7

Q ss_pred             CcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHH
Q psy11461         10 NNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIP-----SYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKA   84 (253)
Q Consensus        10 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~-----~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a   84 (253)
                      .+.....+..++..+...|++++|+..|.+++..+|.+.     .++.++|.++...|++++|+..++++++.+|++..+
T Consensus       137 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~  216 (389)
T PRK11788        137 GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRA  216 (389)
T ss_pred             CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHH
Confidence            556778899999999999999999999999999888653     367789999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461         85 QFFLGQALHEINHYDEAVKHLQRAYDLSREQ  115 (253)
Q Consensus        85 ~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~  115 (253)
                      ++.+|.++...|++++|+..|.+++..+|.+
T Consensus       217 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~  247 (389)
T PRK11788        217 SILLGDLALAQGDYAAAIEALERVEEQDPEY  247 (389)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHChhh
Confidence            9999999999999999999999999988875

>KOG2076|consensus

Probab=99.14  E-value=6.8e-09  Score=95.34  Aligned_cols=126  Identities=16%  Similarity=0.073  Sum_probs=110.7

Q ss_pred             cccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q psy11461         11 NLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQ   90 (253)
Q Consensus        11 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~   90 (253)
                      +.....+...||.+|..|++++|+..+.++|..+|.++.+|..+|.+|-++|+..+|....-.|-.++|.+..-|..++.
T Consensus       136 ~~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~lad  215 (895)
T KOG2076|consen  136 APELRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLAD  215 (895)
T ss_pred             CHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence            44578899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCHHHHHHHHHHHHhhchhcccchHHHHHHHHHHHHHHHHH
Q psy11461         91 ALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIACQLRIAKKKRWA  136 (253)
Q Consensus        91 ~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~  136 (253)
                      ...++|++..|.-+|.+|++.+|.+..-.........+.+....+.
T Consensus       216 ls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am  261 (895)
T KOG2076|consen  216 LSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAM  261 (895)
T ss_pred             HHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHH
Confidence            9999999999999999999999998654444444444444444433

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.14  E-value=1.6e-09  Score=102.81  Aligned_cols=110  Identities=12%  Similarity=0.161  Sum_probs=104.3

Q ss_pred             CCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHH
Q psy11461          9 TNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFL   88 (253)
Q Consensus         9 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l   88 (253)
                      ..|..+..+..+|..+...|++.+|+..|.+++..+|.++.++..+|.++...|++++|+..+++++..+|++.. ++.+
T Consensus        44 ~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~l  122 (765)
T PRK10049         44 HMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLAL  122 (765)
T ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHH
Confidence            356778889999999999999999999999999999999999999999999999999999999999999999999 9999


Q ss_pred             HHHHHHhCCHHHHHHHHHHHHhhchhcccch
Q psy11461         89 GQALHEINHYDEAVKHLQRAYDLSREQNLNY  119 (253)
Q Consensus        89 g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~  119 (253)
                      |.++...|++++|+..+++++++.|++....
T Consensus       123 a~~l~~~g~~~~Al~~l~~al~~~P~~~~~~  153 (765)
T PRK10049        123 AYVYKRAGRHWDELRAMTQALPRAPQTQQYP  153 (765)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH
Confidence            9999999999999999999999999985543

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.11  E-value=5.4e-09  Score=91.36  Aligned_cols=102  Identities=14%  Similarity=0.110  Sum_probs=64.9

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcH-----HHHHHHH
Q psy11461         15 KELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLV-----KAQFFLG   89 (253)
Q Consensus        15 ~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~-----~a~~~lg   89 (253)
                      ..+..+|..++..|+++.|+..|.+++..+|.+..++..++.++.+.|++++|+..+.+++..+|.+.     ..+..+|
T Consensus       108 ~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la  187 (389)
T PRK11788        108 LALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELA  187 (389)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence            44566666666666666666666666666666666666666666666666666666666666655432     2344566


Q ss_pred             HHHHHhCCHHHHHHHHHHHHhhchhcc
Q psy11461         90 QALHEINHYDEAVKHLQRAYDLSREQN  116 (253)
Q Consensus        90 ~~~~~~~~~~~A~~~~~~al~l~p~~~  116 (253)
                      .++...|++++|+..|.++++.+|+..
T Consensus       188 ~~~~~~~~~~~A~~~~~~al~~~p~~~  214 (389)
T PRK11788        188 QQALARGDLDAARALLKKALAADPQCV  214 (389)
T ss_pred             HHHHhCCCHHHHHHHHHHHHhHCcCCH
Confidence            666666666666666666666666543

>KOG4162|consensus

Probab=99.11  E-value=8.3e-10  Score=99.77  Aligned_cols=107  Identities=22%  Similarity=0.193  Sum_probs=101.8

Q ss_pred             CcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHH--HHHHHHhhCCCcHHHHHH
Q psy11461         10 NNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCD--DCRKALELEPSLVKAQFF   87 (253)
Q Consensus        10 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~--~~~~al~l~p~~~~a~~~   87 (253)
                      .+..+..|+..|..+..+|++.+|.++|..|+.++|+++.....+|.++.+.|+..-|..  .+..++++||.|.++||.
T Consensus       680 ~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~  759 (799)
T KOG4162|consen  680 DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYY  759 (799)
T ss_pred             chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHH
Confidence            456678899999999999999999999999999999999999999999999998888877  999999999999999999


Q ss_pred             HHHHHHHhCCHHHHHHHHHHHHhhchhcc
Q psy11461         88 LGQALHEINHYDEAVKHLQRAYDLSREQN  116 (253)
Q Consensus        88 lg~~~~~~~~~~~A~~~~~~al~l~p~~~  116 (253)
                      +|.++..+|+.++|.++|..|+++.+.++
T Consensus       760 LG~v~k~~Gd~~~Aaecf~aa~qLe~S~P  788 (799)
T KOG4162|consen  760 LGEVFKKLGDSKQAAECFQAALQLEESNP  788 (799)
T ss_pred             HHHHHHHccchHHHHHHHHHHHhhccCCC
Confidence            99999999999999999999999998875

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.10  E-value=2.8e-09  Score=105.42  Aligned_cols=95  Identities=20%  Similarity=0.180  Sum_probs=49.8

Q ss_pred             HHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHH--------------HH
Q psy11461         21 GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKA--------------QF   86 (253)
Q Consensus        21 g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a--------------~~   86 (253)
                      |..++..|++++|+..|++++..+|.++.++..+|.+|.++|++++|+..|+++++++|++...              ..
T Consensus       276 G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~  355 (1157)
T PRK11447        276 GLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLI  355 (1157)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHH
Confidence            5555555555555555555555555555555555555555555555555555555555543211              11


Q ss_pred             HHHHHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461         87 FLGQALHEINHYDEAVKHLQRAYDLSREQ  115 (253)
Q Consensus        87 ~lg~~~~~~~~~~~A~~~~~~al~l~p~~  115 (253)
                      .+|.++...|++++|+..|+++++++|++
T Consensus       356 ~~g~~~~~~g~~~eA~~~~~~Al~~~P~~  384 (1157)
T PRK11447        356 QQGDAALKANNLAQAERLYQQARQVDNTD  384 (1157)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            22444445555555555555555555544

>PLN02789 farnesyltranstransferase

Probab=99.10  E-value=4.5e-09  Score=89.36  Aligned_cols=115  Identities=11%  Similarity=0.068  Sum_probs=98.4

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh-CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q psy11461         15 KELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLK-QYVHCCDDCRKALELEPSLVKAQFFLGQALH   93 (253)
Q Consensus        15 ~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~-~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~   93 (253)
                      .++-.+-..+...++++.|+..+.++|.++|.+..+|..|+.++..++ .+.+++..+.+++..+|++..+|++++.++.
T Consensus        38 ~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~  117 (320)
T PLN02789         38 EAMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAE  117 (320)
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHH
Confidence            333334444667889999999999999999999999999999999998 6899999999999999999999999999999


Q ss_pred             HhCCH--HHHHHHHHHHHhhchhcccchHHHHHHHHHH
Q psy11461         94 EINHY--DEAVKHLQRAYDLSREQNLNYGDDIACQLRI  129 (253)
Q Consensus        94 ~~~~~--~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~  129 (253)
                      .+|..  ++++.++.++++++|.+..++....+.....
T Consensus       118 ~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l  155 (320)
T PLN02789        118 KLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTL  155 (320)
T ss_pred             HcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHh
Confidence            99874  7889999999999999877666555444333

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=99.08  E-value=5.7e-10  Score=72.79  Aligned_cols=67  Identities=30%  Similarity=0.381  Sum_probs=56.4

Q ss_pred             HHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q psy11461         24 YFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQ   90 (253)
Q Consensus        24 ~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~   90 (253)
                      ++..|+|++|+..|++++..+|+++.++..+|.||.+.|++++|...+.+++..+|+++..+..++.
T Consensus         1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~   67 (68)
T PF14559_consen    1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ   67 (68)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred             ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence            3578889999999999999999999999999999999999999999999999888888777766654

...

>KOG1173|consensus

Probab=99.08  E-value=1.6e-09  Score=95.04  Aligned_cols=109  Identities=22%  Similarity=0.334  Sum_probs=100.1

Q ss_pred             CCCCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCC-------CCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCC
Q psy11461          7 FTTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNP-------VIPSYFTNRALCYLKLKQYVHCCDDCRKALELEP   79 (253)
Q Consensus         7 ~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p-------~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p   79 (253)
                      ..-.|.++..+..+|...|..+.|.+|+.+|..++..-+       .....+.|+|.++.+++.+.+|+..+++++.+.|
T Consensus       407 ~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~  486 (611)
T KOG1173|consen  407 LAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSP  486 (611)
T ss_pred             HhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCC
Confidence            345678889999999999999999999999999994422       2456799999999999999999999999999999


Q ss_pred             CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461         80 SLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQ  115 (253)
Q Consensus        80 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~  115 (253)
                      .+..++-.+|.+|..+|+++.|+..|.++|-+.|++
T Consensus       487 k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n  522 (611)
T KOG1173|consen  487 KDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDN  522 (611)
T ss_pred             CchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCcc
Confidence            999999999999999999999999999999999997

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=99.08  E-value=1.1e-09  Score=72.53  Aligned_cols=69  Identities=30%  Similarity=0.499  Sum_probs=57.4

Q ss_pred             HHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q psy11461         21 GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLG   89 (253)
Q Consensus        21 g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg   89 (253)
                      ...++..++|+.|+.++..++..+|.++.++..+|.|+..+|++.+|+.+++++++..|++..+...++
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a   70 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRA   70 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence            467788888888888888888888888888888888888888888888888888888888877765544

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.07  E-value=3.9e-09  Score=104.38  Aligned_cols=107  Identities=11%  Similarity=0.018  Sum_probs=94.0

Q ss_pred             CcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q psy11461         10 NNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLG   89 (253)
Q Consensus        10 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg   89 (253)
                      .|.++..+..+|..+...|++++|+.+|.+++..+|.++.++.++|.+|...|++++|+..+++++...|+++.++..+|
T Consensus       599 ~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la  678 (1157)
T PRK11447        599 QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVA  678 (1157)
T ss_pred             CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHH
Confidence            45566778889999999999999999999999999999999999999999999999999999999988899888899999


Q ss_pred             HHHHHhCCHHHHHHHHHHHHhhchhcc
Q psy11461         90 QALHEINHYDEAVKHLQRAYDLSREQN  116 (253)
Q Consensus        90 ~~~~~~~~~~~A~~~~~~al~l~p~~~  116 (253)
                      .++..+|++++|++.|++++...|+++
T Consensus       679 ~~~~~~g~~~eA~~~~~~al~~~~~~~  705 (1157)
T PRK11447        679 LAWAALGDTAAAQRTFNRLIPQAKSQP  705 (1157)
T ss_pred             HHHHhCCCHHHHHHHHHHHhhhCccCC
Confidence            999999999999999999988876653

>KOG1125|consensus

Probab=99.05  E-value=5.7e-09  Score=91.83  Aligned_cols=88  Identities=18%  Similarity=0.108  Sum_probs=67.8

Q ss_pred             CHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhcccchHHHHHHH
Q psy11461         47 IPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIACQ  126 (253)
Q Consensus        47 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~  126 (253)
                      +++++..||..|...|+|++|+.+|+.||..+|++...|.+||-++..-.+.++|+..|++|+++.|+............
T Consensus       429 DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~  508 (579)
T KOG1125|consen  429 DPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISC  508 (579)
T ss_pred             ChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhh
Confidence            33446677777777888888888888888888888888888888888888888899999999998888766555555555


Q ss_pred             HHHHHHHH
Q psy11461        127 LRIAKKKR  134 (253)
Q Consensus       127 ~~~~~~~~  134 (253)
                      +..+..+.
T Consensus       509 mNlG~ykE  516 (579)
T KOG1125|consen  509 MNLGAYKE  516 (579)
T ss_pred             hhhhhHHH
Confidence            55544443

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.04  E-value=8.3e-09  Score=82.89  Aligned_cols=131  Identities=15%  Similarity=0.109  Sum_probs=117.7

Q ss_pred             CCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHH
Q psy11461          9 TNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFL   88 (253)
Q Consensus         9 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l   88 (253)
                      .+|.+... ...+..++..|+-+.+.....++...+|.+..+....|...+..|+|..|+..++++..+.|++.++|..+
T Consensus        62 ~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~l  140 (257)
T COG5010          62 RNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLL  140 (257)
T ss_pred             cCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHH
Confidence            45666666 88999999999999999999999999999999998899999999999999999999999999999999999


Q ss_pred             HHHHHHhCCHHHHHHHHHHHHhhchhcccchHHHHHHHHHHHHHHHHHHHHH
Q psy11461         89 GQALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIACQLRIAKKKRWAETEE  140 (253)
Q Consensus        89 g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (253)
                      |.+|.+.|++++|...|.+++++.|+++....+....++....+........
T Consensus       141 gaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll  192 (257)
T COG5010         141 GAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLL  192 (257)
T ss_pred             HHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHH
Confidence            9999999999999999999999999998888777777777777766655543

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.03  E-value=4.6e-09  Score=99.73  Aligned_cols=104  Identities=8%  Similarity=-0.115  Sum_probs=100.1

Q ss_pred             cHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q psy11461         13 SDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQAL   92 (253)
Q Consensus        13 ~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~   92 (253)
                      ....+..+|..+...|++++|+..+.+++...|.++.++..+|.++...|++++|+..+++++.++|++..+++.+|.++
T Consensus       358 ~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~a  437 (765)
T PRK10049        358 WLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTA  437 (765)
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Confidence            35677889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhCCHHHHHHHHHHHHhhchhcc
Q psy11461         93 HEINHYDEAVKHLQRAYDLSREQN  116 (253)
Q Consensus        93 ~~~~~~~~A~~~~~~al~l~p~~~  116 (253)
                      ..+|++++|+..++++++..|+++
T Consensus       438 l~~~~~~~A~~~~~~ll~~~Pd~~  461 (765)
T PRK10049        438 LDLQEWRQMDVLTDDVVAREPQDP  461 (765)
T ss_pred             HHhCCHHHHHHHHHHHHHhCCCCH
Confidence            999999999999999999999983

>KOG0553|consensus

Probab=99.02  E-value=1.8e-09  Score=88.24  Aligned_cols=92  Identities=23%  Similarity=0.303  Sum_probs=85.1

Q ss_pred             CCCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHH
Q psy11461          8 TTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFF   87 (253)
Q Consensus         8 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~   87 (253)
                      .-.|.++..|++++-.|.+.|.|+.|++....||.+||....+|..+|.+|+.+|++.+|+..|++||.++|+|.....+
T Consensus       109 ~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~n  188 (304)
T KOG0553|consen  109 ELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSN  188 (304)
T ss_pred             hcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHH
Confidence            34688899999999999999999999999999999999999999999999999999999999999999999999988888


Q ss_pred             HHHHHHHhCCHH
Q psy11461         88 LGQALHEINHYD   99 (253)
Q Consensus        88 lg~~~~~~~~~~   99 (253)
                      |..+-..++...
T Consensus       189 L~~Ae~~l~e~~  200 (304)
T KOG0553|consen  189 LKIAEQKLNEPK  200 (304)
T ss_pred             HHHHHHHhcCCC
Confidence            887777666554

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.02  E-value=1.7e-08  Score=95.41  Aligned_cols=141  Identities=7%  Similarity=-0.081  Sum_probs=100.9

Q ss_pred             CCCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHH
Q psy11461          8 TTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFF   87 (253)
Q Consensus         8 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~   87 (253)
                      ...|..+...+..+...++.|++..|+..|.+++..+|.++.....++.++...|+.++|+..+++++.-.|.+...+..
T Consensus        28 ~~~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~lla  107 (822)
T PRK14574         28 VVNPAMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLAS  107 (822)
T ss_pred             ccCccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHH
Confidence            34566788899999999999999999999999999999986444477888888888888888888888333444444555


Q ss_pred             HHHHHHHhCCHHHHHHHHHHHHhhchhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11461         88 LGQALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIACQLRIAKKKRWAETEEKRIAQEIE  148 (253)
Q Consensus        88 lg~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (253)
                      +|.++..+|++++|++.|+++++.+|+++..+...+.......+...+....++.....|.
T Consensus       108 lA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~  168 (822)
T PRK14574        108 AARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPT  168 (822)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcc
Confidence            5778888888888888888888888888655543333333333333333333333333443

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.02  E-value=4.3e-09  Score=91.13  Aligned_cols=89  Identities=16%  Similarity=0.232  Sum_probs=83.6

Q ss_pred             CCCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHH
Q psy11461          8 TTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFF   87 (253)
Q Consensus         8 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~   87 (253)
                      ...|..+..+..+|.+++..|++++|+..+.+++.++|.++.+|+++|.+|+.+|+|++|+..|++++.++|++..+...
T Consensus        30 ~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~  109 (356)
T PLN03088         30 DLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKL  109 (356)
T ss_pred             HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            34677889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhC
Q psy11461         88 LGQALHEIN   96 (253)
Q Consensus        88 lg~~~~~~~   96 (253)
                      ++.|...+.
T Consensus       110 l~~~~~kl~  118 (356)
T PLN03088        110 IKECDEKIA  118 (356)
T ss_pred             HHHHHHHHH
Confidence            998866663

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=99.01  E-value=7.4e-09  Score=78.19  Aligned_cols=98  Identities=20%  Similarity=0.176  Sum_probs=70.5

Q ss_pred             cccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHH
Q psy11461         11 NLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVI---PSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFF   87 (253)
Q Consensus        11 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~   87 (253)
                      +-...+.+.+|..++..|+|++|+..|..++...|+.   +.+...+|.+++..|++++|+..+.. +.-.+-.+.++..
T Consensus        45 ~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~  123 (145)
T PF09976_consen   45 PYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQ-IPDEAFKALAAEL  123 (145)
T ss_pred             hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh-ccCcchHHHHHHH
Confidence            3446677778888888888888888888888776544   34667778888888888888888755 2333344566777


Q ss_pred             HHHHHHHhCCHHHHHHHHHHHH
Q psy11461         88 LGQALHEINHYDEAVKHLQRAY  109 (253)
Q Consensus        88 lg~~~~~~~~~~~A~~~~~~al  109 (253)
                      +|.++...|++++|+..|++|+
T Consensus       124 ~Gdi~~~~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen  124 LGDIYLAQGDYDEARAAYQKAL  145 (145)
T ss_pred             HHHHHHHCCCHHHHHHHHHHhC
Confidence            7888888888888888887764

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=99.01  E-value=3.5e-08  Score=80.89  Aligned_cols=117  Identities=12%  Similarity=0.114  Sum_probs=97.4

Q ss_pred             ccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHH---HHHHHHHHHhhCHHHHHHHHHHHHhhCCCcH---HHH
Q psy11461         12 LSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYF---TNRALCYLKLKQYVHCCDDCRKALELEPSLV---KAQ   85 (253)
Q Consensus        12 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~---~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~---~a~   85 (253)
                      ..+..++..|..++..|+|++|+..|.+++..+|..+.+.   ..+|.+|++.+++++|+..+++.++++|+++   .++
T Consensus        30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~  109 (243)
T PRK10866         30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL  109 (243)
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence            5788899999999999999999999999999999987654   8999999999999999999999999998864   579


Q ss_pred             HHHHHHHHHhC---------------C---HHHHHHHHHHHHhhchhcccchHHHHHHHHHHH
Q psy11461         86 FFLGQALHEIN---------------H---YDEAVKHLQRAYDLSREQNLNYGDDIACQLRIA  130 (253)
Q Consensus        86 ~~lg~~~~~~~---------------~---~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~  130 (253)
                      |.+|.++..++               +   ..+|+..|++.++..|++  .+..+....+..+
T Consensus       110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S--~ya~~A~~rl~~l  170 (243)
T PRK10866        110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNS--QYTTDATKRLVFL  170 (243)
T ss_pred             HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCC--hhHHHHHHHHHHH
Confidence            99999875554               1   357889999999999987  3344444333333

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=99.00  E-value=1.6e-08  Score=74.86  Aligned_cols=105  Identities=19%  Similarity=0.215  Sum_probs=95.5

Q ss_pred             cccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcH---HH
Q psy11461         11 NLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVI---PSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLV---KA   84 (253)
Q Consensus        11 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~---~a   84 (253)
                      ...+..++..|...++.|+|.+|++.++......|..   ..+...++.+|++.++|++|+..+++-|+++|+++   .+
T Consensus         7 ~~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa   86 (142)
T PF13512_consen    7 DKSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYA   86 (142)
T ss_pred             CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHH
Confidence            3457889999999999999999999999999998864   56899999999999999999999999999999876   57


Q ss_pred             HHHHHHHHHHhCC---------------HHHHHHHHHHHHhhchhc
Q psy11461         85 QFFLGQALHEINH---------------YDEAVKHLQRAYDLSREQ  115 (253)
Q Consensus        85 ~~~lg~~~~~~~~---------------~~~A~~~~~~al~l~p~~  115 (253)
                      +|..|.+++.+..               ...|...|.+.++.-|++
T Consensus        87 ~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S  132 (142)
T PF13512_consen   87 YYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNS  132 (142)
T ss_pred             HHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCC
Confidence            9999999999876               788999999999999987

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=99.00  E-value=1.6e-08  Score=73.40  Aligned_cols=96  Identities=25%  Similarity=0.188  Sum_probs=88.0

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCC---cHHHHHHH
Q psy11461         15 KELKDEGNRYFGLRQYEEAINCYTRAIIKNPVI---PSYFTNRALCYLKLKQYVHCCDDCRKALELEPS---LVKAQFFL   88 (253)
Q Consensus        15 ~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~---~~~a~~~l   88 (253)
                      .++++.|..+-..|+.++|+..|.+++......   ..++..+|.++..+|++++|+..+++++...|+   +......+
T Consensus         2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~   81 (120)
T PF12688_consen    2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL   81 (120)
T ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence            568999999999999999999999999986554   468999999999999999999999999999888   88888999


Q ss_pred             HHHHHHhCCHHHHHHHHHHHHh
Q psy11461         89 GQALHEINHYDEAVKHLQRAYD  110 (253)
Q Consensus        89 g~~~~~~~~~~~A~~~~~~al~  110 (253)
                      +.++...|++++|+..+..++.
T Consensus        82 Al~L~~~gr~~eAl~~~l~~la  103 (120)
T PF12688_consen   82 ALALYNLGRPKEALEWLLEALA  103 (120)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHH
Confidence            9999999999999999988774

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.00  E-value=1e-08  Score=85.86  Aligned_cols=121  Identities=24%  Similarity=0.274  Sum_probs=76.3

Q ss_pred             cHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q psy11461         13 SDKELKDEGNRYFGLRQYEEAINCYTRAIIKN--PVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQ   90 (253)
Q Consensus        13 ~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~   90 (253)
                      ++..+......+...|+++.+...+.++....  +.++.+|..+|.++.+.|++++|+.++++|++++|++..+...++.
T Consensus       109 ~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~  188 (280)
T PF13429_consen  109 DPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAW  188 (280)
T ss_dssp             ---------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHH
T ss_pred             ccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence            34555566677778888888888888866554  5677788888888888888888888888888888888888888888


Q ss_pred             HHHHhCCHHHHHHHHHHHHhhchhcccchHHHHHHHHHHHHHH
Q psy11461         91 ALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIACQLRIAKKK  133 (253)
Q Consensus        91 ~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~  133 (253)
                      ++...|+++++...+....+..|.++..+.......+......
T Consensus       189 ~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~  231 (280)
T PF13429_consen  189 LLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYE  231 (280)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HH
T ss_pred             HHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccc
Confidence            8888888888777777777777776554443333333333333

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=99.00  E-value=4.3e-08  Score=78.29  Aligned_cols=114  Identities=18%  Similarity=0.248  Sum_probs=90.7

Q ss_pred             ccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcH---HHH
Q psy11461         12 LSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVI---PSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLV---KAQ   85 (253)
Q Consensus        12 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~---~a~   85 (253)
                      ..+..++..|..++..|+|.+|+..|++.+...|.+   +.+...+|.++++.|++..|+..+++.+...|+++   .++
T Consensus         3 ~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~   82 (203)
T PF13525_consen    3 DTAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYAL   82 (203)
T ss_dssp             --HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHH
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHH
Confidence            467889999999999999999999999999998875   46899999999999999999999999999999865   589


Q ss_pred             HHHHHHHHHhCC-----------HHHHHHHHHHHHhhchhcccchHHHHHHHH
Q psy11461         86 FFLGQALHEINH-----------YDEAVKHLQRAYDLSREQNLNYGDDIACQL  127 (253)
Q Consensus        86 ~~lg~~~~~~~~-----------~~~A~~~~~~al~l~p~~~~~~~~~~~~~~  127 (253)
                      +.+|.+++.+..           ..+|+..|+..++..|++  .+..++...+
T Consensus        83 Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S--~y~~~A~~~l  133 (203)
T PF13525_consen   83 YMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNS--EYAEEAKKRL  133 (203)
T ss_dssp             HHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTS--TTHHHHHHHH
T ss_pred             HHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCc--hHHHHHHHHH
Confidence            999999877542           458999999999999997  3334443333

>KOG0550|consensus

Probab=98.99  E-value=2.8e-08  Score=84.51  Aligned_cols=111  Identities=16%  Similarity=0.117  Sum_probs=98.9

Q ss_pred             CCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHH------------HHHHHHHHHHHhhCHHHHHHHHHHHHh
Q psy11461          9 TNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPS------------YFTNRALCYLKLKQYVHCCDDCRKALE   76 (253)
Q Consensus         9 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~------------~~~~~a~~~~~~~~~~~A~~~~~~al~   76 (253)
                      .++.++.+++..|.+++-.++.+.|+.+|.+++.++|+...            .+..+|.-.++.|+|..|...|..+|.
T Consensus       198 ld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~  277 (486)
T KOG0550|consen  198 LDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALN  277 (486)
T ss_pred             cccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhc
Confidence            45677889999999999999999999999999999997543            477889999999999999999999999


Q ss_pred             hCCCcH----HHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhcccch
Q psy11461         77 LEPSLV----KAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNY  119 (253)
Q Consensus        77 l~p~~~----~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~~~~  119 (253)
                      ++|+|.    +.|.++|.+...+|+..+|+..+..|+.+++.-..++
T Consensus       278 idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikal  324 (486)
T KOG0550|consen  278 IDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKAL  324 (486)
T ss_pred             CCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHH
Confidence            999864    5689999999999999999999999999998864433

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.99  E-value=1.1e-07  Score=82.63  Aligned_cols=107  Identities=22%  Similarity=0.182  Sum_probs=102.1

Q ss_pred             cccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q psy11461         11 NLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQ   90 (253)
Q Consensus        11 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~   90 (253)
                      +....+++..+..++..|+++.|+..+...+...|+|+.++...+.++.+.++..+|.+.+++++.++|+..-...++|.
T Consensus       303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~  382 (484)
T COG4783         303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQ  382 (484)
T ss_pred             ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence            45677889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCHHHHHHHHHHHHhhchhccc
Q psy11461         91 ALHEINHYDEAVKHLQRAYDLSREQNL  117 (253)
Q Consensus        91 ~~~~~~~~~~A~~~~~~al~l~p~~~~  117 (253)
                      ++.+.|++.+|+..++..+.-+|+++.
T Consensus       383 all~~g~~~eai~~L~~~~~~~p~dp~  409 (484)
T COG4783         383 ALLKGGKPQEAIRILNRYLFNDPEDPN  409 (484)
T ss_pred             HHHhcCChHHHHHHHHHHhhcCCCCch
Confidence            999999999999999999999999854

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=98.97  E-value=1.2e-08  Score=76.76  Aligned_cols=94  Identities=13%  Similarity=0.102  Sum_probs=82.1

Q ss_pred             HHhC-CCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhcccch
Q psy11461         41 IIKN-PVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNY  119 (253)
Q Consensus        41 i~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~~~~  119 (253)
                      ..+. ++.....+.+|..++..|++++|...|+.+..+||.+...|++||.|+..+|+|++|+..|.+|+.++|+++...
T Consensus        27 ~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~  106 (157)
T PRK15363         27 LDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAP  106 (157)
T ss_pred             HCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHH
Confidence            3456 677788999999999999999999999999999999999999999999999999999999999999999998776


Q ss_pred             HHHHHHHHHHHHHHH
Q psy11461        120 GDDIACQLRIAKKKR  134 (253)
Q Consensus       120 ~~~~~~~~~~~~~~~  134 (253)
                      .......+...+...
T Consensus       107 ~~ag~c~L~lG~~~~  121 (157)
T PRK15363        107 WAAAECYLACDNVCY  121 (157)
T ss_pred             HHHHHHHHHcCCHHH
Confidence            666665555544433

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.96  E-value=1.1e-08  Score=88.68  Aligned_cols=73  Identities=18%  Similarity=0.181  Sum_probs=67.9

Q ss_pred             CCCCCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHhhCHHHHHHHHHHHHhhC
Q psy11461          6 NFTTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPS---YFTNRALCYLKLKQYVHCCDDCRKALELE   78 (253)
Q Consensus         6 ~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~---~~~~~a~~~~~~~~~~~A~~~~~~al~l~   78 (253)
                      ....+|..+..+.++|..++..|+|++|+.+|+++|.++|+++.   +|+|+|.||..+|++++|+.++++|+++.
T Consensus        67 ~~~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels  142 (453)
T PLN03098         67 GSEADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY  142 (453)
T ss_pred             CccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            34577999999999999999999999999999999999999985   49999999999999999999999999983

>PRK14574 hmsH outer membrane protein; Provisional

Probab=98.95  E-value=3e-07  Score=87.18  Aligned_cols=110  Identities=13%  Similarity=0.190  Sum_probs=83.2

Q ss_pred             CCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHH
Q psy11461          9 TNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFL   88 (253)
Q Consensus         9 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l   88 (253)
                      +.+.....+..+|..+...|+|+.|++.|++++..+|+++.++..++.++...++.++|+..+.+++..+|.+... ..+
T Consensus        97 p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~l  175 (822)
T PRK14574         97 SMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTL  175 (822)
T ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHH
Confidence            3455566666677788888888888888888888888888888888888888888888888888888888875444 445


Q ss_pred             HHHHHHhCCHHHHHHHHHHHHhhchhcccch
Q psy11461         89 GQALHEINHYDEAVKHLQRAYDLSREQNLNY  119 (253)
Q Consensus        89 g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~  119 (253)
                      +.++...+++.+|+..++++++.+|++...+
T Consensus       176 ayL~~~~~~~~~AL~~~ekll~~~P~n~e~~  206 (822)
T PRK14574        176 SYLNRATDRNYDALQASSEAVRLAPTSEEVL  206 (822)
T ss_pred             HHHHHhcchHHHHHHHHHHHHHhCCCCHHHH
Confidence            5555556677668888888888888775443

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.94  E-value=6.8e-08  Score=83.79  Aligned_cols=107  Identities=21%  Similarity=0.147  Sum_probs=101.2

Q ss_pred             CCCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHH
Q psy11461          8 TTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFF   87 (253)
Q Consensus         8 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~   87 (253)
                      ...|+++..+-..|..++..++..+|++.+++++.++|..+.+..++|.+|++.|++.+|+..+...+.-+|+++..|..
T Consensus       334 ~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~  413 (484)
T COG4783         334 AAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDL  413 (484)
T ss_pred             HhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHH
Confidence            35688899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCHHHHHHHHHHHHhhchh
Q psy11461         88 LGQALHEINHYDEAVKHLQRAYDLSRE  114 (253)
Q Consensus        88 lg~~~~~~~~~~~A~~~~~~al~l~p~  114 (253)
                      ||++|-.+|+-.+|...+...+.+...
T Consensus       414 LAqay~~~g~~~~a~~A~AE~~~~~G~  440 (484)
T COG4783         414 LAQAYAELGNRAEALLARAEGYALAGR  440 (484)
T ss_pred             HHHHHHHhCchHHHHHHHHHHHHhCCC
Confidence            999999999999999988888877654

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.93  E-value=2.2e-08  Score=86.52  Aligned_cols=107  Identities=14%  Similarity=-0.072  Sum_probs=96.7

Q ss_pred             CCCCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcH----
Q psy11461          7 FTTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLV----   82 (253)
Q Consensus         7 ~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~----   82 (253)
                      .+..|.....+..+|..+...|++++|+..+.+++..+|+++.++..+|.++...|++++|+..+.+++...|.+.    
T Consensus       107 ~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~  186 (355)
T cd05804         107 APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRG  186 (355)
T ss_pred             CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhH
Confidence            3566777888889999999999999999999999999999999999999999999999999999999999887432    


Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHhhch
Q psy11461         83 KAQFFLGQALHEINHYDEAVKHLQRAYDLSR  113 (253)
Q Consensus        83 ~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p  113 (253)
                      ..+..+|.++...|++++|+..|.+++...|
T Consensus       187 ~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~  217 (355)
T cd05804         187 HNWWHLALFYLERGDYEAALAIYDTHIAPSA  217 (355)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence            3567899999999999999999999987666

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.93  E-value=6.3e-09  Score=90.27  Aligned_cols=69  Identities=16%  Similarity=0.058  Sum_probs=66.2

Q ss_pred             hCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHH---HHHHHHHHHHhCCHHHHHHHHHHHHhh
Q psy11461         43 KNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKA---QFFLGQALHEINHYDEAVKHLQRAYDL  111 (253)
Q Consensus        43 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a---~~~lg~~~~~~~~~~~A~~~~~~al~l  111 (253)
                      .+|+++.+++|+|.+|+++|+|++|+..|++|++++|++..+   |+++|.+|..+|++++|+.++++|+++
T Consensus        70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            378899999999999999999999999999999999999865   999999999999999999999999998

>KOG1308|consensus

Probab=98.93  E-value=5.1e-10  Score=92.85  Aligned_cols=102  Identities=27%  Similarity=0.412  Sum_probs=96.0

Q ss_pred             cHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q psy11461         13 SDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQAL   92 (253)
Q Consensus        13 ~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~   92 (253)
                      .+...+..+...+..|.++.||+.|+.+|.++|..+.+|..+|.++++++++..|+.+|..|+.++|+..+.|-.+|.+.
T Consensus       113 qa~e~k~~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~  192 (377)
T KOG1308|consen  113 QANDKKVQASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAE  192 (377)
T ss_pred             HHHHHHHHHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHH
Confidence            44556667888899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhCCHHHHHHHHHHHHhhchh
Q psy11461         93 HEINHYDEAVKHLQRAYDLSRE  114 (253)
Q Consensus        93 ~~~~~~~~A~~~~~~al~l~p~  114 (253)
                      ..+|++++|..++..+.+++-+
T Consensus       193 rllg~~e~aa~dl~~a~kld~d  214 (377)
T KOG1308|consen  193 RLLGNWEEAAHDLALACKLDYD  214 (377)
T ss_pred             HHhhchHHHHHHHHHHHhcccc
Confidence            9999999999999999998754

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.90  E-value=4.2e-08  Score=79.72  Aligned_cols=102  Identities=19%  Similarity=0.183  Sum_probs=95.1

Q ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCc---HHHHHH
Q psy11461         14 DKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVI---PSYFTNRALCYLKLKQYVHCCDDCRKALELEPSL---VKAQFF   87 (253)
Q Consensus        14 a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~---~~a~~~   87 (253)
                      +...++.|..++..|+|..|+..|..-+...|++   +.+++.||.+++.+|+|++|...|..+++-.|++   +.+++.
T Consensus       141 ~~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK  220 (262)
T COG1729         141 ATKLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK  220 (262)
T ss_pred             hhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence            4559999999999999999999999999999985   5789999999999999999999999999988775   567999


Q ss_pred             HHHHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461         88 LGQALHEINHYDEAVKHLQRAYDLSREQ  115 (253)
Q Consensus        88 lg~~~~~~~~~~~A~~~~~~al~l~p~~  115 (253)
                      +|.|+..+|+.++|...|+++++..|+.
T Consensus       221 lg~~~~~l~~~d~A~atl~qv~k~YP~t  248 (262)
T COG1729         221 LGVSLGRLGNTDEACATLQQVIKRYPGT  248 (262)
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHCCCC
Confidence            9999999999999999999999999986

>PRK11906 transcriptional regulator; Provisional

Probab=98.89  E-value=3.8e-08  Score=85.60  Aligned_cols=110  Identities=9%  Similarity=-0.053  Sum_probs=101.0

Q ss_pred             CCCCCcccHHHHHHHHHHHHhc---------cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHh
Q psy11461          6 NFTTNNLSDKELKDEGNRYFGL---------RQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALE   76 (253)
Q Consensus         6 ~~~~~~~~a~~~~~~g~~~~~~---------g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~   76 (253)
                      +++-+|..+.++..++.+++..         ..-.+|.+...+|++++|.++.++..+|.++...++++.|...+++|+.
T Consensus       287 ~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~  366 (458)
T PRK11906        287 KSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKI  366 (458)
T ss_pred             cccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhh
Confidence            4567788899999999888654         2456788899999999999999999999999999999999999999999


Q ss_pred             hCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461         77 LEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQ  115 (253)
Q Consensus        77 l~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~  115 (253)
                      ++|+...+++..|.++...|+.++|.+.+++|++++|.-
T Consensus       367 L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~  405 (458)
T PRK11906        367 HSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRR  405 (458)
T ss_pred             cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchh
Confidence            999999999999999999999999999999999999984

>KOG2076|consensus

Probab=98.89  E-value=1.7e-07  Score=86.44  Aligned_cols=107  Identities=14%  Similarity=0.075  Sum_probs=103.6

Q ss_pred             CCCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHH
Q psy11461          8 TTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFF   87 (253)
Q Consensus         8 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~   87 (253)
                      -.+|..+.+|+.+|.+|-++|+..++..+...|-.++|.+...|..+|....++|++..|.-+|.+||+.+|.+.+..+.
T Consensus       167 kqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~e  246 (895)
T KOG2076|consen  167 KQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYE  246 (895)
T ss_pred             HhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHH
Confidence            35688899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCHHHHHHHHHHHHhhchh
Q psy11461         88 LGQALHEINHYDEAVKHLQRAYDLSRE  114 (253)
Q Consensus        88 lg~~~~~~~~~~~A~~~~~~al~l~p~  114 (253)
                      ++..|.++|+...|...|.+.+.++|.
T Consensus       247 rs~L~~~~G~~~~Am~~f~~l~~~~p~  273 (895)
T KOG2076|consen  247 RSSLYQKTGDLKRAMETFLQLLQLDPP  273 (895)
T ss_pred             HHHHHHHhChHHHHHHHHHHHHhhCCc
Confidence            999999999999999999999999994

>KOG1156|consensus

Probab=98.88  E-value=1e-06  Score=78.82  Aligned_cols=104  Identities=16%  Similarity=0.181  Sum_probs=58.6

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q psy11461         15 KELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHE   94 (253)
Q Consensus        15 ~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~   94 (253)
                      ..+|..+..++..++|...+...+..+...|.++......|..+..+|+-++|...++.++..|+.+.-.|..+|.++..
T Consensus         8 ~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~   87 (700)
T KOG1156|consen    8 NALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRS   87 (700)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhh
Confidence            34455555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             hCCHHHHHHHHHHHHhhchhcccc
Q psy11461         95 INHYDEAVKHLQRAYDLSREQNLN  118 (253)
Q Consensus        95 ~~~~~~A~~~~~~al~l~p~~~~~  118 (253)
                      ..+|++|+++|+.|+.++|+|...
T Consensus        88 dK~Y~eaiKcy~nAl~~~~dN~qi  111 (700)
T KOG1156|consen   88 DKKYDEAIKCYRNALKIEKDNLQI  111 (700)
T ss_pred             hhhHHHHHHHHHHHHhcCCCcHHH
Confidence            555555555555555555555433

>KOG3060|consensus

Probab=98.86  E-value=6.3e-07  Score=71.91  Aligned_cols=110  Identities=13%  Similarity=0.047  Sum_probs=82.9

Q ss_pred             cccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q psy11461         11 NLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQ   90 (253)
Q Consensus        11 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~   90 (253)
                      |.........|..+-..|.|++|+++|...+..+|.+...+-..-.+...+|+.-+|++.+..-++..+++..+|..++.
T Consensus        83 p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLae  162 (289)
T KOG3060|consen   83 PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAE  162 (289)
T ss_pred             CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence            45566667777788888888888888888888888877777766666777777777777777777777777777777777


Q ss_pred             HHHHhCCHHHHHHHHHHHHhhchhcccchH
Q psy11461         91 ALHEINHYDEAVKHLQRAYDLSREQNLNYG  120 (253)
Q Consensus        91 ~~~~~~~~~~A~~~~~~al~l~p~~~~~~~  120 (253)
                      +|+..|+|+.|.-+++..+-+.|-++.-+.
T Consensus       163 iY~~~~~f~kA~fClEE~ll~~P~n~l~f~  192 (289)
T KOG3060|consen  163 IYLSEGDFEKAAFCLEELLLIQPFNPLYFQ  192 (289)
T ss_pred             HHHhHhHHHHHHHHHHHHHHcCCCcHHHHH
Confidence            777777777777777777777777654443

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.86  E-value=1e-08  Score=67.77  Aligned_cols=61  Identities=28%  Similarity=0.477  Sum_probs=58.9

Q ss_pred             HHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461         55 ALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQ  115 (253)
Q Consensus        55 a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~  115 (253)
                      ..+|...++|++|+..+++++.++|+++..++.+|.++..+|++.+|+..|.++++.+|++
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~   62 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDD   62 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCc
Confidence            5678999999999999999999999999999999999999999999999999999999986

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.85  E-value=4.4e-07  Score=85.73  Aligned_cols=112  Identities=13%  Similarity=-0.013  Sum_probs=99.1

Q ss_pred             CCCCCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcH---
Q psy11461          6 NFTTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLV---   82 (253)
Q Consensus         6 ~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~---   82 (253)
                      ...-+|.+..++..+...+...+++++|+.....++..+|+...+|+.+|..+++.+++.++...  .++.+.+.+.   
T Consensus        23 ~~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~  100 (906)
T PRK14720         23 ANNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWA  100 (906)
T ss_pred             cccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchh
Confidence            34456888999999999999999999999999999999999999999999999999988877666  6666655555   


Q ss_pred             ----------------HHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhcccch
Q psy11461         83 ----------------KAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNY  119 (253)
Q Consensus        83 ----------------~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~~~~  119 (253)
                                      .|++.+|.||-.+|++++|...|+++++++|+++..+
T Consensus       101 ~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aL  153 (906)
T PRK14720        101 IVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIV  153 (906)
T ss_pred             HHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHH
Confidence                            8999999999999999999999999999999986543

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.84  E-value=9.2e-08  Score=74.29  Aligned_cols=75  Identities=15%  Similarity=0.168  Sum_probs=66.8

Q ss_pred             CCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCc---HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhcccch
Q psy11461         45 PVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSL---VKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNY  119 (253)
Q Consensus        45 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~---~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~~~~  119 (253)
                      +..+.+++++|.++...|++++|+.+|++++.+.|+.   ..+++.+|.++..+|++++|+..+.+++++.|.+...+
T Consensus        32 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  109 (172)
T PRK02603         32 AKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSAL  109 (172)
T ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHH
Confidence            4567789999999999999999999999999987763   56899999999999999999999999999999874443

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.84  E-value=1.7e-07  Score=72.52  Aligned_cols=97  Identities=10%  Similarity=0.046  Sum_probs=81.5

Q ss_pred             HHHHHhccCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCc---HHHHHHHHHHHHHh
Q psy11461         21 GNRYFGLRQYEEAINCYTRAIIKNPVI--PSYFTNRALCYLKLKQYVHCCDDCRKALELEPSL---VKAQFFLGQALHEI   95 (253)
Q Consensus        21 g~~~~~~g~~~~A~~~y~~ai~~~p~~--~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~---~~a~~~lg~~~~~~   95 (253)
                      .+.+|-.+.|..+...+...+..++..  ..+++++|.++..+|++++|+..+++++.+.|+.   ..+++++|.++...
T Consensus         6 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~   85 (168)
T CHL00033          6 RNDNFIDKTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSN   85 (168)
T ss_pred             ccccccccccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHc
Confidence            345566667777777786666666655  6678999999999999999999999999987763   45899999999999


Q ss_pred             CCHHHHHHHHHHHHhhchhccc
Q psy11461         96 NHYDEAVKHLQRAYDLSREQNL  117 (253)
Q Consensus        96 ~~~~~A~~~~~~al~l~p~~~~  117 (253)
                      |++++|+..+.+++++.|....
T Consensus        86 g~~~eA~~~~~~Al~~~~~~~~  107 (168)
T CHL00033         86 GEHTKALEYYFQALERNPFLPQ  107 (168)
T ss_pred             CCHHHHHHHHHHHHHhCcCcHH
Confidence            9999999999999999887643

>KOG1840|consensus

Probab=98.84  E-value=4.4e-07  Score=81.11  Aligned_cols=108  Identities=19%  Similarity=0.193  Sum_probs=95.1

Q ss_pred             CCCCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhh-
Q psy11461          7 FTTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIK--------NPVIPSYFTNRALCYLKLKQYVHCCDDCRKALEL-   77 (253)
Q Consensus         7 ~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l-   77 (253)
                      -...|....+...+|..|+.+|+|+.|+..++.|+..        +|.-.....++|..|..++++.+|+..|.+|+.+ 
T Consensus       192 ~~~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~  271 (508)
T KOG1840|consen  192 GDEDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIR  271 (508)
T ss_pred             ccCCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            3456777888888999999999999999999999998        6666667777999999999999999999999987 


Q ss_pred             -------CCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchh
Q psy11461         78 -------EPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSRE  114 (253)
Q Consensus        78 -------~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~  114 (253)
                             +|....++.+||.+|...|++.+|..++.+|+++-..
T Consensus       272 e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~  315 (508)
T KOG1840|consen  272 EEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEK  315 (508)
T ss_pred             HHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHH
Confidence                   3445678999999999999999999999999998665

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.83  E-value=7.7e-09  Score=69.35  Aligned_cols=65  Identities=29%  Similarity=0.449  Sum_probs=35.8

Q ss_pred             HHHHHHHHHHHHHhhCHHHHHHHHHHHHhhC-------CCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhc
Q psy11461         48 PSYFTNRALCYLKLKQYVHCCDDCRKALELE-------PSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLS  112 (253)
Q Consensus        48 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~-------p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~  112 (253)
                      +.++.++|.+|..+|+|++|+.++++++.+.       |....++.++|.++..+|++++|++++++++++.
T Consensus         5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~   76 (78)
T PF13424_consen    5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF   76 (78)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence            4455555555555555555555555555431       1123455666666666666666666666666553

...

>KOG1156|consensus

Probab=98.83  E-value=3.8e-07  Score=81.53  Aligned_cols=122  Identities=15%  Similarity=0.064  Sum_probs=109.0

Q ss_pred             CCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHH
Q psy11461          9 TNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFL   88 (253)
Q Consensus         9 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l   88 (253)
                      ..|.....+-..|-.+...|+-++|..+...++..++.+..+|.-+|.++..-.+|++|+++|+.|+.++|+|...++-+
T Consensus        36 k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDl  115 (700)
T KOG1156|consen   36 KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDL  115 (700)
T ss_pred             hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence            45666778888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCHHHHHHHHHHHHhhchhcccchHHHHHHHHHHH
Q psy11461         89 GQALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIACQLRIA  130 (253)
Q Consensus        89 g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~  130 (253)
                      +....++++++.....-.+.+++.|++...+..-+......+
T Consensus       116 slLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g  157 (700)
T KOG1156|consen  116 SLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLG  157 (700)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence            999999999999999999999999997554444444433333

>KOG1840|consensus

Probab=98.82  E-value=2.2e-07  Score=83.06  Aligned_cols=105  Identities=28%  Similarity=0.420  Sum_probs=91.1

Q ss_pred             CCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhC--
Q psy11461          9 TNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIK--------NPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELE--   78 (253)
Q Consensus         9 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~--   78 (253)
                      .++.-+..+..+|..|...++|.+|+..|.+|+.+        +|.-+.++.|+|.+|.+.|+|++|..+|++|+.+-  
T Consensus       236 ~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~  315 (508)
T KOG1840|consen  236 KHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEK  315 (508)
T ss_pred             cCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHH
Confidence            34556667778999999999999999999999987        56667789999999999999999999999999873  


Q ss_pred             ------CCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhch
Q psy11461         79 ------PSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSR  113 (253)
Q Consensus        79 ------p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p  113 (253)
                            |.-...+..++.++..++++++|+.++++++++.-
T Consensus       316 ~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~  356 (508)
T KOG1840|consen  316 LLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYL  356 (508)
T ss_pred             hhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Confidence                  33445688899999999999999999999999865

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.81  E-value=7.4e-09  Score=69.44  Aligned_cols=69  Identities=23%  Similarity=0.396  Sum_probs=59.7

Q ss_pred             CcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHh---C----CCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhC
Q psy11461         10 NNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIK---N----PVIPSYFTNRALCYLKLKQYVHCCDDCRKALELE   78 (253)
Q Consensus        10 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~---~----p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~   78 (253)
                      +|..+..+.++|..++..|+|++|+.+|.+++.+   .    |..+.++.++|.|+..+|++++|+..+++++++.
T Consensus         1 H~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~   76 (78)
T PF13424_consen    1 HPDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF   76 (78)
T ss_dssp             -HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence            3667889999999999999999999999999976   1    2235689999999999999999999999999863

...

>KOG3060|consensus

Probab=98.81  E-value=6.5e-07  Score=71.87  Aligned_cols=110  Identities=15%  Similarity=0.000  Sum_probs=100.9

Q ss_pred             CCCCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHH
Q psy11461          7 FTTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQF   86 (253)
Q Consensus         7 ~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~   86 (253)
                      ..++|.+...++..--....+|+-.+||+.+..-+...+.+..+|..++.+|+..|+|.+|.-++++.+-+.|-++..+.
T Consensus       113 L~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~  192 (289)
T KOG3060|consen  113 LEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQ  192 (289)
T ss_pred             hccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHH
Confidence            45667888888888888889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhC---CHHHHHHHHHHHHhhchhcc
Q psy11461         87 FLGQALHEIN---HYDEAVKHLQRAYDLSREQN  116 (253)
Q Consensus        87 ~lg~~~~~~~---~~~~A~~~~~~al~l~p~~~  116 (253)
                      ++|.+++-+|   ++.-|.++|.++++++|.+.
T Consensus       193 rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~  225 (289)
T KOG3060|consen  193 RLAEVLYTQGGAENLELARKYYERALKLNPKNL  225 (289)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhH
Confidence            9999988877   57889999999999999763

>KOG2003|consensus

Probab=98.80  E-value=1.4e-08  Score=87.32  Aligned_cols=112  Identities=14%  Similarity=0.119  Sum_probs=103.9

Q ss_pred             CCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHH
Q psy11461          9 TNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFL   88 (253)
Q Consensus         9 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l   88 (253)
                      .+.-++.++.+.||..|..|+++.|.+.|++|+..+.++..+++|.|..+..+|+.++|+.+|-+...+--++...++.+
T Consensus       485 ~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qi  564 (840)
T KOG2003|consen  485 IDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQI  564 (840)
T ss_pred             ccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            44567888999999999999999999999999999999999999999999999999999999999988888999999999


Q ss_pred             HHHHHHhCCHHHHHHHHHHHHhhchhcccchH
Q psy11461         89 GQALHEINHYDEAVKHLQRAYDLSREQNLNYG  120 (253)
Q Consensus        89 g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~  120 (253)
                      +.+|-.+.+...|++.+.++..+-|+++..+.
T Consensus       565 aniye~led~aqaie~~~q~~slip~dp~ils  596 (840)
T KOG2003|consen  565 ANIYELLEDPAQAIELLMQANSLIPNDPAILS  596 (840)
T ss_pred             HHHHHHhhCHHHHHHHHHHhcccCCCCHHHHH
Confidence            99999999999999999999999998865443

>KOG1173|consensus

Probab=98.79  E-value=6.1e-08  Score=85.28  Aligned_cols=114  Identities=15%  Similarity=0.158  Sum_probs=108.5

Q ss_pred             CCCCCCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHH
Q psy11461          5 HNFTTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKA   84 (253)
Q Consensus         5 ~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a   84 (253)
                      ++....|..+..|+..|..|+..|++.+|..+|.++..++|..+.+|...|..+.-.+..++|+..|.+|-++-|.....
T Consensus       303 ~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP  382 (611)
T KOG1173|consen  303 KLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLP  382 (611)
T ss_pred             HHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcch
Confidence            45567789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHhhchhcccc
Q psy11461         85 QFFLGQALHEINHYDEAVKHLQRAYDLSREQNLN  118 (253)
Q Consensus        85 ~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~~~  118 (253)
                      .+.+|.-|..++++.-|.++|..|+.++|+++..
T Consensus       383 ~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv  416 (611)
T KOG1173|consen  383 SLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLV  416 (611)
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchh
Confidence            9999999999999999999999999999998643

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=98.76  E-value=4e-07  Score=69.63  Aligned_cols=86  Identities=26%  Similarity=0.346  Sum_probs=71.8

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhC----------HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhCC--
Q psy11461         30 YEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQ----------YVHCCDDCRKALELEPSLVKAQFFLGQALHEINH--   97 (253)
Q Consensus        30 ~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~----------~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~~~--   97 (253)
                      |+.|.+.|......+|.++..+++=|.+++.+.+          +++|+.-+++||.++|+...+++.+|.++..++.  
T Consensus         7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~   86 (186)
T PF06552_consen    7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT   86 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence            6789999999999999999999999999988754          5678888999999999999999999999998863  


Q ss_pred             ---------HHHHHHHHHHHHhhchhc
Q psy11461         98 ---------YDEAVKHLQRAYDLSREQ  115 (253)
Q Consensus        98 ---------~~~A~~~~~~al~l~p~~  115 (253)
                               |+.|..+|++|...+|++
T Consensus        87 ~d~~~A~~~F~kA~~~FqkAv~~~P~n  113 (186)
T PF06552_consen   87 PDTAEAEEYFEKATEYFQKAVDEDPNN  113 (186)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHH-TT-
T ss_pred             CChHHHHHHHHHHHHHHHHHHhcCCCc
Confidence                     788899999999999997

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>KOG2002|consensus

Probab=98.76  E-value=1.8e-07  Score=86.85  Aligned_cols=113  Identities=14%  Similarity=0.138  Sum_probs=99.8

Q ss_pred             CCCCCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCc-
Q psy11461          6 NFTTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVI---PSYFTNRALCYLKLKQYVHCCDDCRKALELEPSL-   81 (253)
Q Consensus         6 ~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~-   81 (253)
                      .+..++.++.++..+++.+|-.|+|..+...+..++...-..   +..++.+|.+|..+|+|++|..+|.+++..+|++ 
T Consensus       262 ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~  341 (1018)
T KOG2002|consen  262 AYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNF  341 (1018)
T ss_pred             HHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCc
Confidence            345678889999999999999999999999999998875433   4569999999999999999999999999999988 


Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhcccc
Q psy11461         82 VKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLN  118 (253)
Q Consensus        82 ~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~~~  118 (253)
                      .-+++.+|+.++..|+++.|+.+|.++++..|++...
T Consensus       342 ~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~et  378 (1018)
T KOG2002|consen  342 VLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYET  378 (1018)
T ss_pred             cccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHH
Confidence            8889999999999999999999999999999987543

>KOG1127|consensus

Probab=98.75  E-value=7.7e-07  Score=83.04  Aligned_cols=109  Identities=18%  Similarity=0.215  Sum_probs=94.3

Q ss_pred             CcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHH------------------------------------HHH
Q psy11461         10 NNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSY------------------------------------FTN   53 (253)
Q Consensus        10 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~------------------------------------~~~   53 (253)
                      ++.-+-+|..+|..|...-+...|..+|.+|.++|+.++.+                                    |..
T Consensus       488 d~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~  567 (1238)
T KOG1127|consen  488 DVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQ  567 (1238)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhh
Confidence            45567788889999988888999999999999998875543                                    555


Q ss_pred             HHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhcccc
Q psy11461         54 RALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLN  118 (253)
Q Consensus        54 ~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~~~  118 (253)
                      +|..|...+++..|+.+++.|+..+|++..+|..+|.+|...|.+..|++.|.+|..++|.+...
T Consensus       568 rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~  632 (1238)
T KOG1127|consen  568 RGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYG  632 (1238)
T ss_pred             ccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHH
Confidence            77777778888889999999999999999999999999999999999999999999999997543

>KOG1174|consensus

Probab=98.74  E-value=6.6e-07  Score=76.39  Aligned_cols=115  Identities=10%  Similarity=0.018  Sum_probs=79.6

Q ss_pred             CCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHH
Q psy11461          9 TNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFL   88 (253)
Q Consensus         9 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l   88 (253)
                      .-+.+...+..+|.+++..|++.+|+..|.++..++|.+.......|..+...|+++.-.......+..+.....-|+.-
T Consensus       227 ~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~  306 (564)
T KOG1174|consen  227 TLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVH  306 (564)
T ss_pred             cCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhh
Confidence            34566777788888888888888888888888888888777766666666666666666666666666555555566666


Q ss_pred             HHHHHHhCCHHHHHHHHHHHHhhchhcccchHHHH
Q psy11461         89 GQALHEINHYDEAVKHLQRAYDLSREQNLNYGDDI  123 (253)
Q Consensus        89 g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~  123 (253)
                      |..++..+++..|+.+-.++++.+|.+..++.-..
T Consensus       307 ~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG  341 (564)
T KOG1174|consen  307 AQLLYDEKKFERALNFVEKCIDSEPRNHEALILKG  341 (564)
T ss_pred             hhhhhhhhhHHHHHHHHHHHhccCcccchHHHhcc
Confidence            66666666677777777777777666654444333

>KOG2002|consensus

Probab=98.74  E-value=5e-07  Score=84.03  Aligned_cols=111  Identities=16%  Similarity=0.172  Sum_probs=100.5

Q ss_pred             CCCCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhC--CCcHHH
Q psy11461          7 FTTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELE--PSLVKA   84 (253)
Q Consensus         7 ~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~--p~~~~a   84 (253)
                      ...+|.+..+-...|.++-..|++..|+..|.+.......++++|.|+|.||+.+|+|..|++.|+.+++-.  .++...
T Consensus       639 L~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~v  718 (1018)
T KOG2002|consen  639 LRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEV  718 (1018)
T ss_pred             HhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHH
Confidence            345677777778899999999999999999999988877788999999999999999999999999999864  467889


Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHhhchhccc
Q psy11461         85 QFFLGQALHEINHYDEAVKHLQRAYDLSREQNL  117 (253)
Q Consensus        85 ~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~~  117 (253)
                      +..||.+++..|.+.+|.+.+.+|+.+.|.+..
T Consensus       719 l~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~  751 (1018)
T KOG2002|consen  719 LHYLARAWYEAGKLQEAKEALLKARHLAPSNTS  751 (1018)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHhCCccch
Confidence            999999999999999999999999999999865

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.74  E-value=2.5e-07  Score=62.55  Aligned_cols=67  Identities=28%  Similarity=0.443  Sum_probs=63.8

Q ss_pred             HHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhcc
Q psy11461         50 YFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQN  116 (253)
Q Consensus        50 ~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~  116 (253)
                      +++++|.++...|++++|+..+.+++...|.+..+++.+|.++...+++++|+..|.+++...|.+.
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~   68 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNA   68 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcch
Confidence            5788999999999999999999999999999999999999999999999999999999999998864

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.72  E-value=3.8e-08  Score=64.01  Aligned_cols=58  Identities=28%  Similarity=0.368  Sum_probs=54.6

Q ss_pred             HHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461         58 YLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQ  115 (253)
Q Consensus        58 ~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~  115 (253)
                      +++.|+|++|+..|++++..+|++..+++.+|.|+...|++++|...+.+++..+|++
T Consensus         1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~   58 (68)
T PF14559_consen    1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDN   58 (68)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTH
T ss_pred             ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCH
Confidence            3578999999999999999999999999999999999999999999999999999986

...

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.71  E-value=4.8e-07  Score=81.84  Aligned_cols=138  Identities=14%  Similarity=0.064  Sum_probs=98.7

Q ss_pred             CCcccHHHHHHHHHHHHhccC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh--------CHHHHHHHHHHHHhh
Q psy11461          9 TNNLSDKELKDEGNRYFGLRQ---YEEAINCYTRAIIKNPVIPSYFTNRALCYLKLK--------QYVHCCDDCRKALEL   77 (253)
Q Consensus         9 ~~~~~a~~~~~~g~~~~~~g~---~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~--------~~~~A~~~~~~al~l   77 (253)
                      +....+..++..|..++..+.   +..|+.+|++|++.+|+++.++..++.+|....        ++..+.....+++.+
T Consensus       334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al  413 (517)
T PRK10153        334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVAL  413 (517)
T ss_pred             CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhc
Confidence            444567788889998887655   889999999999999999999999998886653        344566666676664


Q ss_pred             --CCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11461         78 --EPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIACQLRIAKKKRWAETEEKRIAQEI  147 (253)
Q Consensus        78 --~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (253)
                        +|..+.++.-+|..+...|++++|...+++|+.++|+ ...+..........++...+....++....+|
T Consensus       414 ~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P  484 (517)
T PRK10153        414 PELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTAFNLRP  484 (517)
T ss_pred             ccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence              7777888888999988899999999999999999984 33333333333333444444433333333333

>PRK11906 transcriptional regulator; Provisional

Probab=98.71  E-value=5e-07  Score=78.73  Aligned_cols=133  Identities=11%  Similarity=-0.038  Sum_probs=108.7

Q ss_pred             HHHHHHHHHHhccC---HHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHh---------hCHHHHHHHHHHHHhhCCC
Q psy11461         16 ELKDEGNRYFGLRQ---YEEAINCYTRAI---IKNPVIPSYFTNRALCYLKL---------KQYVHCCDDCRKALELEPS   80 (253)
Q Consensus        16 ~~~~~g~~~~~~g~---~~~A~~~y~~ai---~~~p~~~~~~~~~a~~~~~~---------~~~~~A~~~~~~al~l~p~   80 (253)
                      .++..|...+..+.   ...|..++.+|+   .++|..+.+|..+|.|+...         ....+|....++|++++|.
T Consensus       257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~  336 (458)
T PRK11906        257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV  336 (458)
T ss_pred             HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC
Confidence            56788888866554   467889999999   99999999999999999875         2356889999999999999


Q ss_pred             cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11461         81 LVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIACQLRIAKKKRWAETEEKRIAQEIE  148 (253)
Q Consensus        81 ~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (253)
                      ++.++..+|.++...++++.|...|.+|+.++|+....+.-..+.....++........++..+..|-
T Consensus       337 Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~  404 (458)
T PRK11906        337 DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPR  404 (458)
T ss_pred             CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCch
Confidence            99999999999999999999999999999999999777766666555555555555555554554444

>KOG1128|consensus

Probab=98.71  E-value=1.5e-07  Score=85.02  Aligned_cols=105  Identities=15%  Similarity=0.158  Sum_probs=95.6

Q ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q psy11461         14 DKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALH   93 (253)
Q Consensus        14 a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~   93 (253)
                      +.+....|.-.+.+++|.++..+++.++.++|-....|+++|.|..+++++..|..+|.+++.++|++..+|.+++.+|.
T Consensus       485 arA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi  564 (777)
T KOG1128|consen  485 ARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYI  564 (777)
T ss_pred             HHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHH
Confidence            33445566666778999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhCCHHHHHHHHHHHHhhchhcccc
Q psy11461         94 EINHYDEAVKHLQRAYDLSREQNLN  118 (253)
Q Consensus        94 ~~~~~~~A~~~~~~al~l~p~~~~~  118 (253)
                      .+++-.+|...+..|++.+.++...
T Consensus       565 ~~~~k~ra~~~l~EAlKcn~~~w~i  589 (777)
T KOG1128|consen  565 RLKKKKRAFRKLKEALKCNYQHWQI  589 (777)
T ss_pred             HHhhhHHHHHHHHHHhhcCCCCCee
Confidence            9999999999999999998666543

>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis

Probab=98.71  E-value=1.1e-08  Score=67.66  Aligned_cols=40  Identities=38%  Similarity=0.517  Sum_probs=32.3

Q ss_pred             hchhcCCCCCCCCCCCCCCCCcCcHHHHHHHHHHhhhcCc
Q psy11461        210 RRRKVGHFDPVTRVKLSADQLIPNFAMKEVVDNFLQENDW  249 (253)
Q Consensus       210 ~~~~~g~~DP~tr~~l~~~~l~pN~~lk~a~~~~l~~n~w  249 (253)
                      ....++..||+|+++++.++|+||.+||++|++|+.+|.|
T Consensus        34 ~l~~~~~~~P~t~~~l~~~~l~pn~~Lk~~I~~~~~~~~~   73 (73)
T PF04564_consen   34 WLEQNGGTDPFTRQPLSESDLIPNRALKSAIEEWCAENKK   73 (73)
T ss_dssp             HHCTTSSB-TTT-SB-SGGGSEE-HHHHHHHHHHHHHCTC
T ss_pred             HHHcCCCCCCCCCCcCCcccceECHHHHHHHHHHHHHccC
Confidence            3334688999999999999999999999999999999988

Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=98.70  E-value=9.9e-07  Score=69.39  Aligned_cols=109  Identities=21%  Similarity=0.237  Sum_probs=103.5

Q ss_pred             CCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHH
Q psy11461          9 TNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFL   88 (253)
Q Consensus         9 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l   88 (253)
                      ++...+..++..|..|-..|-+.-|.-.|++++.++|.-+.+++-+|..+...|+|+.|.+.|..++++||.+-.++.++
T Consensus        60 ~~eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNR  139 (297)
T COG4785          60 TDEERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNR  139 (297)
T ss_pred             ChHHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcc
Confidence            34567889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCHHHHHHHHHHHHhhchhccc
Q psy11461         89 GQALHEINHYDEAVKHLQRAYDLSREQNL  117 (253)
Q Consensus        89 g~~~~~~~~~~~A~~~~~~al~l~p~~~~  117 (253)
                      |.+++.-|++.-|.+.+.+-.+-+|+++.
T Consensus       140 gi~~YY~gR~~LAq~d~~~fYQ~D~~DPf  168 (297)
T COG4785         140 GIALYYGGRYKLAQDDLLAFYQDDPNDPF  168 (297)
T ss_pred             ceeeeecCchHhhHHHHHHHHhcCCCChH
Confidence            99999999999999999999999999854

>KOG0543|consensus

Probab=98.69  E-value=2.4e-07  Score=78.90  Aligned_cols=100  Identities=27%  Similarity=0.319  Sum_probs=88.7

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q psy11461         15 KELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHE   94 (253)
Q Consensus        15 ~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~   94 (253)
                      ..+.+++.++.+.++|..|+....+++.++|.|+.+++.+|.++..+++|+.|+.+|++|++++|.|..+...+..+...
T Consensus       258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k  337 (397)
T KOG0543|consen  258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQK  337 (397)
T ss_pred             HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence            36788999999999999999999999999999999999999999999999999999999999999998888888888777


Q ss_pred             hCCHHHH-HHHHHHHHhhchh
Q psy11461         95 INHYDEA-VKHLQRAYDLSRE  114 (253)
Q Consensus        95 ~~~~~~A-~~~~~~al~l~p~  114 (253)
                      ...+.+. .+.|.+.+...+.
T Consensus       338 ~~~~~~kekk~y~~mF~k~~~  358 (397)
T KOG0543|consen  338 IREYEEKEKKMYANMFAKLAE  358 (397)
T ss_pred             HHHHHHHHHHHHHHHhhcccc
Confidence            6665554 6777777766554

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.69  E-value=3e-07  Score=79.98  Aligned_cols=95  Identities=21%  Similarity=0.254  Sum_probs=88.1

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q psy11461         15 KELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHE   94 (253)
Q Consensus        15 ~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~   94 (253)
                      .....++..++..++-.+|+..+.+++..+|.++.++...|..++..++++.|+..+++++.+.|.+...|+.|+.+|..
T Consensus       201 ev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~  280 (395)
T PF09295_consen  201 EVAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQ  280 (395)
T ss_pred             cHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHh
Confidence            35566899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCHHHHHHHHHHHH
Q psy11461         95 INHYDEAVKHLQRAY  109 (253)
Q Consensus        95 ~~~~~~A~~~~~~al  109 (253)
                      +|+++.|+..++.+-
T Consensus       281 ~~d~e~ALlaLNs~P  295 (395)
T PF09295_consen  281 LGDFENALLALNSCP  295 (395)
T ss_pred             cCCHHHHHHHHhcCc
Confidence            999999998777543

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.65  E-value=4.3e-07  Score=82.15  Aligned_cols=108  Identities=14%  Similarity=0.069  Sum_probs=91.3

Q ss_pred             CCCcccHHHHHHHHHHHHhc--------cCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhh
Q psy11461          8 TTNNLSDKELKDEGNRYFGL--------RQYEEAINCYTRAIIK--NPVIPSYFTNRALCYLKLKQYVHCCDDCRKALEL   77 (253)
Q Consensus         8 ~~~~~~a~~~~~~g~~~~~~--------g~~~~A~~~y~~ai~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l   77 (253)
                      ..+|..+.++-.++.++...        ++...+.....+++..  +|.++.+|.-+|..+...|++++|...+++|+.+
T Consensus       370 ~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L  449 (517)
T PRK10153        370 KSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL  449 (517)
T ss_pred             HhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Confidence            34677788877777766543        2345666666776664  7788899999999999999999999999999999


Q ss_pred             CCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhcc
Q psy11461         78 EPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQN  116 (253)
Q Consensus        78 ~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~  116 (253)
                      +| +..+|..+|.++...|++++|+..|.+|++++|..+
T Consensus       450 ~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p  487 (517)
T PRK10153        450 EM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN  487 (517)
T ss_pred             CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence            99 578999999999999999999999999999999975

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=98.64  E-value=3.2e-06  Score=70.14  Aligned_cols=103  Identities=19%  Similarity=0.265  Sum_probs=57.0

Q ss_pred             ccHHHHHHHHHHHHhccCHHHHHHHHHHHHHh----------------------------------CCC-----CHHHHH
Q psy11461         12 LSDKELKDEGNRYFGLRQYEEAINCYTRAIIK----------------------------------NPV-----IPSYFT   52 (253)
Q Consensus        12 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~----------------------------------~p~-----~~~~~~   52 (253)
                      ....++..+|..|+..|-++.|+..|...+..                                  .+.     .+.+|+
T Consensus       105 qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyC  184 (389)
T COG2956         105 QRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYC  184 (389)
T ss_pred             HHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHH
Confidence            34455666666666666666666666655543                                  222     123455


Q ss_pred             HHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchh
Q psy11461         53 NRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSRE  114 (253)
Q Consensus        53 ~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~  114 (253)
                      .+|..+....+++.|...+.+|++-+|+++++-..+|.+....|+|+.|++.++.+++-+|+
T Consensus       185 ELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~  246 (389)
T COG2956         185 ELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPE  246 (389)
T ss_pred             HHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChH
Confidence            55555555555555555555555555555555555555555555555555555555555554

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.62  E-value=5.2e-07  Score=64.92  Aligned_cols=78  Identities=13%  Similarity=0.210  Sum_probs=69.8

Q ss_pred             CCCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHH
Q psy11461          8 TTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVI---PSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKA   84 (253)
Q Consensus         8 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a   84 (253)
                      +.++..+..++.+|..++..|+++.|+..|..++..+|.+   +.++.++|.++.+++++++|+..+.+++...|++..+
T Consensus        33 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~  112 (119)
T TIGR02795        33 PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSAA  112 (119)
T ss_pred             CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChhH
Confidence            3344557889999999999999999999999999998885   6789999999999999999999999999999998765


Q ss_pred             H
Q psy11461         85 Q   85 (253)
Q Consensus        85 ~   85 (253)
                      .
T Consensus       113 ~  113 (119)
T TIGR02795       113 K  113 (119)
T ss_pred             H
Confidence            4

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.61  E-value=1.2e-06  Score=72.26  Aligned_cols=106  Identities=16%  Similarity=0.050  Sum_probs=88.9

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhC---CHHHHHHHH
Q psy11461         29 QYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEIN---HYDEAVKHL  105 (253)
Q Consensus        29 ~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~~---~~~~A~~~~  105 (253)
                      ..+..+..++.-+..+|.++.-|..+|.+|+.+|++..|...|.+|+++.|+|+..+..+|.++....   .-.++...|
T Consensus       137 ~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll  216 (287)
T COG4235         137 EMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALL  216 (287)
T ss_pred             cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence            46677777888899999999999999999999999999999999999999999999999999987764   357899999


Q ss_pred             HHHHhhchhcccchHHHHHHHHHHHHHHH
Q psy11461        106 QRAYDLSREQNLNYGDDIACQLRIAKKKR  134 (253)
Q Consensus       106 ~~al~l~p~~~~~~~~~~~~~~~~~~~~~  134 (253)
                      +++++++|.+.....-.....+...+...
T Consensus       217 ~~al~~D~~~iral~lLA~~afe~g~~~~  245 (287)
T COG4235         217 RQALALDPANIRALSLLAFAAFEQGDYAE  245 (287)
T ss_pred             HHHHhcCCccHHHHHHHHHHHHHcccHHH
Confidence            99999999986555444444444444433

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=98.60  E-value=2.4e-06  Score=70.88  Aligned_cols=106  Identities=11%  Similarity=0.092  Sum_probs=99.7

Q ss_pred             CcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcH-HHHHHH
Q psy11461         10 NNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLV-KAQFFL   88 (253)
Q Consensus        10 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~-~a~~~l   88 (253)
                      .-.-|+.++.++..+....+++.|...+.+|++.+|+++.+-..+|.+....|+|..|++.++.+++.||+.. .+.-.|
T Consensus       176 ~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L  255 (389)
T COG2956         176 RVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEML  255 (389)
T ss_pred             hhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHH
Confidence            4457889999999999999999999999999999999999999999999999999999999999999999864 678889


Q ss_pred             HHHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461         89 GQALHEINHYDEAVKHLQRAYDLSREQ  115 (253)
Q Consensus        89 g~~~~~~~~~~~A~~~~~~al~l~p~~  115 (253)
                      ..||..+|+.++++..+.++.+..++.
T Consensus       256 ~~~Y~~lg~~~~~~~fL~~~~~~~~g~  282 (389)
T COG2956         256 YECYAQLGKPAEGLNFLRRAMETNTGA  282 (389)
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHccCCc
Confidence            999999999999999999999988775

>KOG2003|consensus

Probab=98.59  E-value=3.2e-06  Score=73.13  Aligned_cols=102  Identities=16%  Similarity=0.101  Sum_probs=49.2

Q ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q psy11461         14 DKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALH   93 (253)
Q Consensus        14 a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~   93 (253)
                      ++.+.+++++|-...+..+||++|.++..+-|++|..+..+|..|-+-|+-..|.+++-......|.|....-+||.-|.
T Consensus       558 ~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyi  637 (840)
T KOG2003|consen  558 AEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYI  637 (840)
T ss_pred             HHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHH
Confidence            34444444444444444444444444444444444444444444444444444444444444444444444444444444


Q ss_pred             HhCCHHHHHHHHHHHHhhchhc
Q psy11461         94 EINHYDEAVKHLQRAYDLSREQ  115 (253)
Q Consensus        94 ~~~~~~~A~~~~~~al~l~p~~  115 (253)
                      ...-++.|+.+|++|--+.|+.
T Consensus       638 dtqf~ekai~y~ekaaliqp~~  659 (840)
T KOG2003|consen  638 DTQFSEKAINYFEKAALIQPNQ  659 (840)
T ss_pred             hhHHHHHHHHHHHHHHhcCccH
Confidence            4444455555555555454443

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.58  E-value=1.4e-06  Score=75.22  Aligned_cols=104  Identities=15%  Similarity=0.096  Sum_probs=83.0

Q ss_pred             ccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHH-------------------------------------HHHH
Q psy11461         12 LSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSY-------------------------------------FTNR   54 (253)
Q Consensus        12 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~-------------------------------------~~~~   54 (253)
                      .........|..++..|+++.|+..+.+++..+|.+..+                                     +..+
T Consensus        41 ~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  120 (355)
T cd05804          41 TERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGML  120 (355)
T ss_pred             CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHH
Confidence            345566778888888999999999888888877766533                                     3356


Q ss_pred             HHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461         55 ALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQ  115 (253)
Q Consensus        55 a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~  115 (253)
                      |.++..+|++++|+..+++++.++|++..++..+|.++...|++++|+..+.+++...|.+
T Consensus       121 a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~  181 (355)
T cd05804         121 AFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCS  181 (355)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCC
Confidence            6677788888888888888888888888888888888888888888888888888887653

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG1129|consensus

Probab=98.56  E-value=1.2e-07  Score=78.71  Aligned_cols=103  Identities=15%  Similarity=0.101  Sum_probs=63.3

Q ss_pred             CCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHH
Q psy11461          9 TNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFL   88 (253)
Q Consensus         9 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l   88 (253)
                      .-|.+...+..++.++-..+++++|.++|+.+++.+|.+..+....|.-|+--++.+-|+.+|++.+.+.-.++..+.++
T Consensus       285 ~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~Ni  364 (478)
T KOG1129|consen  285 SFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNI  364 (478)
T ss_pred             cCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhH
Confidence            44667777888888888888888888888888888776555544444444444555555555555555544445555555


Q ss_pred             HHHHHHhCCHHHHHHHHHHHHhh
Q psy11461         89 GQALHEINHYDEAVKHLQRAYDL  111 (253)
Q Consensus        89 g~~~~~~~~~~~A~~~~~~al~l  111 (253)
                      |.|++.-++++-++..|.+|+..
T Consensus       365 gLCC~yaqQ~D~~L~sf~RAlst  387 (478)
T KOG1129|consen  365 GLCCLYAQQIDLVLPSFQRALST  387 (478)
T ss_pred             HHHHHhhcchhhhHHHHHHHHhh
Confidence            55555555555555555555444

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.55  E-value=1.2e-07  Score=64.50  Aligned_cols=61  Identities=30%  Similarity=0.402  Sum_probs=55.5

Q ss_pred             cHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHH
Q psy11461         13 SDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKA   74 (253)
Q Consensus        13 ~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a   74 (253)
                      +...++.+|.++++.|+|..|+..+++ ...+|.++...+.+|.|++++|+|++|+..+.++
T Consensus        24 ~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~~~   84 (84)
T PF12895_consen   24 NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKALEKA   84 (84)
T ss_dssp             HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence            566788899999999999999999999 8888888899999999999999999999999875

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.53  E-value=2e-06  Score=81.42  Aligned_cols=103  Identities=14%  Similarity=-0.003  Sum_probs=87.5

Q ss_pred             CCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCC-------------------CCHHHHHHHHHHHHHhhCHHHHHH
Q psy11461          9 TNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNP-------------------VIPSYFTNRALCYLKLKQYVHCCD   69 (253)
Q Consensus         9 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p-------------------~~~~~~~~~a~~~~~~~~~~~A~~   69 (253)
                      .+|.....++..|..+++.+++.++...  .++...+                   .+-.+++.+|.||-++|++++|..
T Consensus        60 ~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~  137 (906)
T PRK14720         60 EHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKG  137 (906)
T ss_pred             hCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHH
Confidence            4567777888888888888777666555  4444444                   444899999999999999999999


Q ss_pred             HHHHHHhhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchh
Q psy11461         70 DCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSRE  114 (253)
Q Consensus        70 ~~~~al~l~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~  114 (253)
                      .++++++++|+|+.++.++|..|... +.++|+.++.+|+...-+
T Consensus       138 ~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~  181 (906)
T PRK14720        138 VWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIK  181 (906)
T ss_pred             HHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999 999999999999987543

>KOG1128|consensus

Probab=98.52  E-value=1.4e-06  Score=79.05  Aligned_cols=107  Identities=17%  Similarity=0.219  Sum_probs=101.3

Q ss_pred             CCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHH
Q psy11461          9 TNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFL   88 (253)
Q Consensus         9 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l   88 (253)
                      -+|-....|+..|.++.+.++++.|..+|+.++.++|++..+|+|++.+|.++++-.+|...+.+|++-+-.+.+.|-+.
T Consensus       514 ~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENy  593 (777)
T KOG1128|consen  514 INPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENY  593 (777)
T ss_pred             cCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeech
Confidence            45667889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461         89 GQALHEINHYDEAVKHLQRAYDLSREQ  115 (253)
Q Consensus        89 g~~~~~~~~~~~A~~~~~~al~l~p~~  115 (253)
                      -.+....|.+++|++.+.+.+.+....
T Consensus       594 mlvsvdvge~eda~~A~~rll~~~~~~  620 (777)
T KOG1128|consen  594 MLVSVDVGEFEDAIKAYHRLLDLRKKY  620 (777)
T ss_pred             hhhhhhcccHHHHHHHHHHHHHhhhhc
Confidence            999999999999999999999886554

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=98.49  E-value=7.3e-06  Score=65.41  Aligned_cols=109  Identities=17%  Similarity=0.244  Sum_probs=89.4

Q ss_pred             CCCCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHhhC-----------HHHHHHHHH
Q psy11461          7 FTTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIP---SYFTNRALCYLKLKQ-----------YVHCCDDCR   72 (253)
Q Consensus         7 ~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~---~~~~~~a~~~~~~~~-----------~~~A~~~~~   72 (253)
                      .+.++....+.+.+|..+++.|+|..|+..|.+.+..+|.++   .+++.+|.+++.+..           ..+|+..++
T Consensus        35 ~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~  114 (203)
T PF13525_consen   35 YPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFE  114 (203)
T ss_dssp             -TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHH
T ss_pred             CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHH
Confidence            467788889999999999999999999999999999999865   578899999877543           458999999


Q ss_pred             HHHhhCCCcHHH-----------------HHHHHHHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461         73 KALELEPSLVKA-----------------QFFLGQALHEINHYDEAVKHLQRAYDLSREQ  115 (253)
Q Consensus        73 ~al~l~p~~~~a-----------------~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~  115 (253)
                      ..+...|++..+                 -+..|..|...|.|..|+..++.+++.-|+.
T Consensus       115 ~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t  174 (203)
T PF13525_consen  115 ELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDT  174 (203)
T ss_dssp             HHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCC
Confidence            999999987432                 3446888999999999999999999999987

>KOG1174|consensus

Probab=98.49  E-value=2.7e-06  Score=72.72  Aligned_cols=77  Identities=13%  Similarity=0.164  Sum_probs=56.3

Q ss_pred             CCCCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHH
Q psy11461          7 FTTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVK   83 (253)
Q Consensus         7 ~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~   83 (253)
                      +..++....++...|+.+.+.|+..+|+-.|+.|+.+.|.....|-.+-.||+..|++.+|.-..+.++..-|.+.+
T Consensus       327 I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~  403 (564)
T KOG1174|consen  327 IDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSAR  403 (564)
T ss_pred             hccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchh
Confidence            34556667778888888888888888888888888888888888888888888877777766555544444333333

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.48  E-value=9.1e-06  Score=61.22  Aligned_cols=95  Identities=19%  Similarity=0.134  Sum_probs=83.8

Q ss_pred             cHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCc---HHHHH
Q psy11461         13 SDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVI---PSYFTNRALCYLKLKQYVHCCDDCRKALELEPSL---VKAQF   86 (253)
Q Consensus        13 ~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~---~~a~~   86 (253)
                      .+...+......+..+++..+...+...+..+|..   ..+...+|.+++..|++++|...|+.++...|+.   ..+.+
T Consensus        10 ~a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l   89 (145)
T PF09976_consen   10 QASALYEQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARL   89 (145)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHH
Confidence            45566777777788999999999999999999998   5678889999999999999999999999987654   45789


Q ss_pred             HHHHHHHHhCCHHHHHHHHHH
Q psy11461         87 FLGQALHEINHYDEAVKHLQR  107 (253)
Q Consensus        87 ~lg~~~~~~~~~~~A~~~~~~  107 (253)
                      ++|.++...|++++|+..+..
T Consensus        90 ~LA~~~~~~~~~d~Al~~L~~  110 (145)
T PF09976_consen   90 RLARILLQQGQYDEALATLQQ  110 (145)
T ss_pred             HHHHHHHHcCCHHHHHHHHHh
Confidence            999999999999999999866

>TIGR00540 hemY_coli hemY protein

Probab=98.48  E-value=9.2e-06  Score=71.85  Aligned_cols=95  Identities=11%  Similarity=-0.044  Sum_probs=46.4

Q ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHh
Q psy11461         17 LKDEGNRYFGLRQYEEAINCYTRAIIKNPVIP-SYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEI   95 (253)
Q Consensus        17 ~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~-~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~   95 (253)
                      +...|..+..+|+++.|..+|.++.+..|.+. .+...++..+...|+++.|...+++.++..|+++.++..++.++...
T Consensus       121 ~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~  200 (409)
T TIGR00540       121 LIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRS  200 (409)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            33444444455555555555555544444442 23333444555555555555555555555555555555555555555


Q ss_pred             CCHHHHHHHHHHHHhh
Q psy11461         96 NHYDEAVKHLQRAYDL  111 (253)
Q Consensus        96 ~~~~~A~~~~~~al~l  111 (253)
                      |++++|.+.+.+..+.
T Consensus       201 ~d~~~a~~~l~~l~k~  216 (409)
T TIGR00540       201 GAWQALDDIIDNMAKA  216 (409)
T ss_pred             hhHHHHHHHHHHHHHc
Confidence            5555555555444443

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG4162|consensus

Probab=98.46  E-value=4.3e-06  Score=76.25  Aligned_cols=107  Identities=21%  Similarity=0.138  Sum_probs=98.0

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q psy11461         15 KELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHE   94 (253)
Q Consensus        15 ~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~   94 (253)
                      ..|...|..+...+.-++|.-|+.++-.++|..+..|+.+|.++...|++.+|...|..|+.++|+++..+..+|.++..
T Consensus       651 ~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle  730 (799)
T KOG4162|consen  651 KLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLE  730 (799)
T ss_pred             HHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence            45667788888889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCHHHHHH--HHHHHHhhchhcccchHH
Q psy11461         95 INHYDEAVK--HLQRAYDLSREQNLNYGD  121 (253)
Q Consensus        95 ~~~~~~A~~--~~~~al~l~p~~~~~~~~  121 (253)
                      .|+..-|..  .+..+++++|.++..+..
T Consensus       731 ~G~~~la~~~~~L~dalr~dp~n~eaW~~  759 (799)
T KOG4162|consen  731 LGSPRLAEKRSLLSDALRLDPLNHEAWYY  759 (799)
T ss_pred             hCCcchHHHHHHHHHHHhhCCCCHHHHHH
Confidence            998888887  999999999998654443

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=98.45  E-value=7.5e-05  Score=60.50  Aligned_cols=117  Identities=21%  Similarity=0.229  Sum_probs=96.6

Q ss_pred             cccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcH---HH
Q psy11461         11 NLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIP---SYFTNRALCYLKLKQYVHCCDDCRKALELEPSLV---KA   84 (253)
Q Consensus        11 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~---~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~---~a   84 (253)
                      ...+..|++.|...++.|+|.+|+..|......+|.++   .+...++.++++.++++.|+...++-+.+.|+++   .+
T Consensus        31 ~~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~  110 (254)
T COG4105          31 NLPASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYA  110 (254)
T ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHH
Confidence            44688999999999999999999999999999988754   6888999999999999999999999999998865   46


Q ss_pred             HHHHHHHHHHhCC--------HHHHHHHHHHHHhhchhcccchHHHHHHHHHH
Q psy11461         85 QFFLGQALHEINH--------YDEAVKHLQRAYDLSREQNLNYGDDIACQLRI  129 (253)
Q Consensus        85 ~~~lg~~~~~~~~--------~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~  129 (253)
                      +|..|.+++..=+        ..+|+..|...+.--|++  .+..+....+..
T Consensus       111 ~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS--~Ya~dA~~~i~~  161 (254)
T COG4105         111 YYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNS--RYAPDAKARIVK  161 (254)
T ss_pred             HHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCC--cchhhHHHHHHH
Confidence            8888999776532        467888999999999987  333444333333

>TIGR00540 hemY_coli hemY protein

Probab=98.44  E-value=1.7e-05  Score=70.12  Aligned_cols=117  Identities=9%  Similarity=-0.005  Sum_probs=100.6

Q ss_pred             cHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcH-HHHHHHHHH
Q psy11461         13 SDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLV-KAQFFLGQA   91 (253)
Q Consensus        13 ~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~-~a~~~lg~~   91 (253)
                      .+......|...+..|+|..|.+...++....|.....+...|.+...+|+++.|...+.++.+..|++. .+....+.+
T Consensus        83 k~~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l  162 (409)
T TIGR00540        83 KAQKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRI  162 (409)
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHH
Confidence            4556677899999999999999999999999999888889999999999999999999999999999885 566667999


Q ss_pred             HHHhCCHHHHHHHHHHHHhhchhcccchHHHHHHHHHH
Q psy11461         92 LHEINHYDEAVKHLQRAYDLSREQNLNYGDDIACQLRI  129 (253)
Q Consensus        92 ~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~  129 (253)
                      +...|+++.|...+++.++..|+++....-.....+..
T Consensus       163 ~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~  200 (409)
T TIGR00540       163 LLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRS  200 (409)
T ss_pred             HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            99999999999999999999999865444333333333

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG1129|consensus

Probab=98.44  E-value=1.2e-06  Score=72.93  Aligned_cols=96  Identities=15%  Similarity=0.123  Sum_probs=57.2

Q ss_pred             HHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhCCH
Q psy11461         19 DEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHY   98 (253)
Q Consensus        19 ~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~~~~   98 (253)
                      ++|.+|++.|.+..|...++.++...|. ++.+..++.+|....+...|+..+...+...|.++..+...+.++-.++++
T Consensus       228 Q~gkCylrLgm~r~AekqlqssL~q~~~-~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~  306 (478)
T KOG1129|consen  228 QMGKCYLRLGMPRRAEKQLQSSLTQFPH-PDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQ  306 (478)
T ss_pred             HHHHHHHHhcChhhhHHHHHHHhhcCCc-hhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhH
Confidence            4666666666666666666666665442 444555555555555566666666655555555555555555555555666


Q ss_pred             HHHHHHHHHHHhhchhc
Q psy11461         99 DEAVKHLQRAYDLSREQ  115 (253)
Q Consensus        99 ~~A~~~~~~al~l~p~~  115 (253)
                      ++|+++|+.+++++|.+
T Consensus       307 ~~a~~lYk~vlk~~~~n  323 (478)
T KOG1129|consen  307 EDALQLYKLVLKLHPIN  323 (478)
T ss_pred             HHHHHHHHHHHhcCCcc
Confidence            66666666666555554

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=98.41  E-value=3.3e-05  Score=69.78  Aligned_cols=99  Identities=17%  Similarity=0.092  Sum_probs=91.2

Q ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q psy11461         14 DKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALH   93 (253)
Q Consensus        14 a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~   93 (253)
                      ..+++-++..|-..|++++|+.+..+||...|+.+.+|...|.++...|++.+|...++.|-.+|+.+-..-...+..++
T Consensus       194 lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~L  273 (517)
T PF12569_consen  194 LWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLL  273 (517)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHH
Confidence            35678889999999999999999999999999999999999999999999999999999999999998888788888899


Q ss_pred             HhCCHHHHHHHHHHHHhhc
Q psy11461         94 EINHYDEAVKHLQRAYDLS  112 (253)
Q Consensus        94 ~~~~~~~A~~~~~~al~l~  112 (253)
                      ..|+.++|.+.+..-.+-+
T Consensus       274 Ra~~~e~A~~~~~~Ftr~~  292 (517)
T PF12569_consen  274 RAGRIEEAEKTASLFTRED  292 (517)
T ss_pred             HCCCHHHHHHHHHhhcCCC
Confidence            9999999999888766554

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=98.41  E-value=1.5e-05  Score=70.30  Aligned_cols=92  Identities=13%  Similarity=-0.020  Sum_probs=51.9

Q ss_pred             HHHHHhccCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhCCHH
Q psy11461         21 GNRYFGLRQYEEAINCYTRAIIKNPVIPSYF-TNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYD   99 (253)
Q Consensus        21 g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~-~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~~~~~   99 (253)
                      +....+.|+++.|...|.++.+.+|++..+. ...+..+...|+++.|...++++++.+|+++.++..++.+|...|+++
T Consensus       125 A~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~  204 (398)
T PRK10747        125 AEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWS  204 (398)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHH
Confidence            3333556666666666666665555543222 223555556666666666666666666666666666666666666666


Q ss_pred             HHHHHHHHHHhhc
Q psy11461        100 EAVKHLQRAYDLS  112 (253)
Q Consensus       100 ~A~~~~~~al~l~  112 (253)
                      +|+..+.+..+..
T Consensus       205 ~a~~~l~~l~k~~  217 (398)
T PRK10747        205 SLLDILPSMAKAH  217 (398)
T ss_pred             HHHHHHHHHHHcC
Confidence            6665555555443

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=98.40  E-value=6.3e-05  Score=68.01  Aligned_cols=47  Identities=21%  Similarity=0.189  Sum_probs=31.8

Q ss_pred             ccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q psy11461         12 LSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCY   58 (253)
Q Consensus        12 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~   58 (253)
                      +....+-..|..+++.|++++|...|...|..+|++..+|..+..|.
T Consensus        36 Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~   82 (517)
T PF12569_consen   36 DKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEAL   82 (517)
T ss_pred             CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Confidence            34455566777777777777777777777777777666666665555

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.40  E-value=3.3e-06  Score=69.95  Aligned_cols=78  Identities=6%  Similarity=0.046  Sum_probs=70.5

Q ss_pred             CCCCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHH
Q psy11461          7 FTTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPV---IPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVK   83 (253)
Q Consensus         7 ~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~   83 (253)
                      .|.++..+.+++.+|..++..|+|++|+..|.+++..+|+   .+.+++.+|.++..+|++++|+..|+++++..|++..
T Consensus       173 yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~  252 (263)
T PRK10803        173 YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDG  252 (263)
T ss_pred             CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence            4555666789999999999999999999999999999887   4678999999999999999999999999999998865


Q ss_pred             H
Q psy11461         84 A   84 (253)
Q Consensus        84 a   84 (253)
                      +
T Consensus       253 a  253 (263)
T PRK10803        253 A  253 (263)
T ss_pred             H
Confidence            4

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=98.38  E-value=9.3e-07  Score=52.30  Aligned_cols=42  Identities=29%  Similarity=0.199  Sum_probs=26.6

Q ss_pred             HHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q psy11461         49 SYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQ   90 (253)
Q Consensus        49 ~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~   90 (253)
                      .++..+|.+|..+|++++|+..++++++.+|+++.++..+|.
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            345566666666666666666666666666666666666553

>KOG1310|consensus

Probab=98.36  E-value=1.6e-06  Score=76.21  Aligned_cols=107  Identities=31%  Similarity=0.301  Sum_probs=97.8

Q ss_pred             CCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh---CHHHHHHHHHHHHhhCCCcHHHH
Q psy11461          9 TNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLK---QYVHCCDDCRKALELEPSLVKAQ   85 (253)
Q Consensus         9 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~---~~~~A~~~~~~al~l~p~~~~a~   85 (253)
                      .-|.....++..|+..+..+.+..|+..|.+++...|....++.|+|.++++.+   +.-.|+.+|..|+.++|...++|
T Consensus       369 eL~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah  448 (758)
T KOG1310|consen  369 ELPENIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAH  448 (758)
T ss_pred             hchHHHHHHHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHH
Confidence            446678889999999999999999999999999999999999999999999854   56679999999999999999999


Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461         86 FFLGQALHEINHYDEAVKHLQRAYDLSREQ  115 (253)
Q Consensus        86 ~~lg~~~~~~~~~~~A~~~~~~al~l~p~~  115 (253)
                      ++++.++..++++.+|+.+...+....|.+
T Consensus       449 ~~la~aL~el~r~~eal~~~~alq~~~Ptd  478 (758)
T KOG1310|consen  449 FRLARALNELTRYLEALSCHWALQMSFPTD  478 (758)
T ss_pred             HHHHHHHHHHhhHHHhhhhHHHHhhcCchh
Confidence            999999999999999999988888778854

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=98.34  E-value=5.2e-07  Score=50.19  Aligned_cols=32  Identities=31%  Similarity=0.438  Sum_probs=17.6

Q ss_pred             HHHHHhhCCCcHHHHHHHHHHHHHhCCHHHHH
Q psy11461         71 CRKALELEPSLVKAQFFLGQALHEINHYDEAV  102 (253)
Q Consensus        71 ~~~al~l~p~~~~a~~~lg~~~~~~~~~~~A~  102 (253)
                      |++||+++|+++.+|+++|.+|...|++++|+
T Consensus         2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence            44555555555555555555555555555553

>KOG0495|consensus

Probab=98.33  E-value=6.2e-05  Score=68.02  Aligned_cols=119  Identities=15%  Similarity=0.089  Sum_probs=56.4

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHh
Q psy11461         16 ELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEI   95 (253)
Q Consensus        16 ~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~   95 (253)
                      .|...++.....+..++|+.++..+++..|+.+.+|..+|.++-++++.+.|...|...++..|..+..|..++.+--..
T Consensus       653 v~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~  732 (913)
T KOG0495|consen  653 VWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKD  732 (913)
T ss_pred             hhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHh
Confidence            33344444444444444444444444444544445555555554445555454444444444444444444444444444


Q ss_pred             CCHHHHHHHHHHHHhhchhcccchHHHHHHHHHHHHHHH
Q psy11461         96 NHYDEAVKHLQRAYDLSREQNLNYGDDIACQLRIAKKKR  134 (253)
Q Consensus        96 ~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~  134 (253)
                      |..-.|...+.++.-.+|.+..-+...|...++.+....
T Consensus       733 ~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~  771 (913)
T KOG0495|consen  733 GQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQ  771 (913)
T ss_pred             cchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHH
Confidence            444444444444444444444444444444444433333

>KOG1127|consensus

Probab=98.33  E-value=1.2e-05  Score=75.35  Aligned_cols=99  Identities=17%  Similarity=0.161  Sum_probs=92.8

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q psy11461         15 KELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHE   94 (253)
Q Consensus        15 ~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~   94 (253)
                      ..|..+|-.+...+++.+|+..++.|+..+|.+..+|..+|.+|...|++.-|++.|.+|..++|.+..+.|..+.....
T Consensus       563 ~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd  642 (1238)
T KOG1127|consen  563 ENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECD  642 (1238)
T ss_pred             hhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHH
Confidence            35666899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCHHHHHHHHHHHHhhch
Q psy11461         95 INHYDEAVKHLQRAYDLSR  113 (253)
Q Consensus        95 ~~~~~~A~~~~~~al~l~p  113 (253)
                      +|+|.+|+..+...+....
T Consensus       643 ~GkYkeald~l~~ii~~~s  661 (1238)
T KOG1127|consen  643 NGKYKEALDALGLIIYAFS  661 (1238)
T ss_pred             hhhHHHHHHHHHHHHHHHH
Confidence            9999999999888776543

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=98.33  E-value=4.6e-05  Score=67.19  Aligned_cols=116  Identities=9%  Similarity=-0.025  Sum_probs=91.2

Q ss_pred             cHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHHhhCHHHHHHHHHHHHhhCCCcHHHH-HHHHH
Q psy11461         13 SDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNR-ALCYLKLKQYVHCCDDCRKALELEPSLVKAQ-FFLGQ   90 (253)
Q Consensus        13 ~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~-a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~-~~lg~   90 (253)
                      .+...+..|...+..|+|+.|++...++-...+ ++..++.+ |.+..+.|+++.|...+.++.+.+|++..+. ...+.
T Consensus        83 ~~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~-~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~  161 (398)
T PRK10747         83 RARKQTEQALLKLAEGDYQQVEKLMTRNADHAE-QPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVR  161 (398)
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhccc-chHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHH
Confidence            456677889999999999999988887665433 35555555 6666999999999999999999999986444 45599


Q ss_pred             HHHHhCCHHHHHHHHHHHHhhchhcccchHHHHHHHHHH
Q psy11461         91 ALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIACQLRI  129 (253)
Q Consensus        91 ~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~  129 (253)
                      .+...|+++.|...++++++.+|+++....-.....++.
T Consensus       162 l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~  200 (398)
T PRK10747        162 IQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRT  200 (398)
T ss_pred             HHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence            999999999999999999999999865544444333333

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=98.31  E-value=6.7e-07  Score=49.74  Aligned_cols=33  Identities=33%  Similarity=0.506  Sum_probs=31.4

Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHH
Q psy11461         36 CYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCC   68 (253)
Q Consensus        36 ~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~   68 (253)
                      +|++||+++|+++.+|+++|.+|...|++++|+
T Consensus         1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence            489999999999999999999999999999986

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.31  E-value=3.5e-05  Score=63.22  Aligned_cols=109  Identities=16%  Similarity=0.127  Sum_probs=89.9

Q ss_pred             CCCCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHhh------------------CHH
Q psy11461          7 FTTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIP---SYFTNRALCYLKLK------------------QYV   65 (253)
Q Consensus         7 ~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~---~~~~~~a~~~~~~~------------------~~~   65 (253)
                      .+..+....+.+.+|..+++.++|.+|+..|++.+..+|+++   .+++.+|.++..++                  ...
T Consensus        62 yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~  141 (243)
T PRK10866         62 YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHAR  141 (243)
T ss_pred             CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHH
Confidence            445556667789999999999999999999999999998764   57889999875554                  135


Q ss_pred             HHHHHHHHHHhhCCCcHHH-----------------HHHHHHHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461         66 HCCDDCRKALELEPSLVKA-----------------QFFLGQALHEINHYDEAVKHLQRAYDLSREQ  115 (253)
Q Consensus        66 ~A~~~~~~al~l~p~~~~a-----------------~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~  115 (253)
                      +|+..+++.+...|++..+                 -+..|.-|...|.|..|+.-++.+++--|+.
T Consensus       142 ~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t  208 (243)
T PRK10866        142 AAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDT  208 (243)
T ss_pred             HHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCC
Confidence            7889999999999987532                 2345777889999999999999999998886

>PRK15331 chaperone protein SicA; Provisional

Probab=98.26  E-value=3.7e-05  Score=58.33  Aligned_cols=92  Identities=11%  Similarity=-0.033  Sum_probs=78.5

Q ss_pred             CCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhcccchHHHH
Q psy11461         44 NPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNYGDDI  123 (253)
Q Consensus        44 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~  123 (253)
                      .++.....+..|.-++..|++++|...|+-..-.+|.+.+.++.||.|+..+++|++|+..|..|.-++++++.......
T Consensus        33 s~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~ag  112 (165)
T PRK15331         33 PQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTG  112 (165)
T ss_pred             CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHH
Confidence            44455678889999999999999999999999999999999999999999999999999999999999999987766555


Q ss_pred             HHHHHHHHHHHH
Q psy11461        124 ACQLRIAKKKRW  135 (253)
Q Consensus       124 ~~~~~~~~~~~~  135 (253)
                      ...+...+...+
T Consensus       113 qC~l~l~~~~~A  124 (165)
T PRK15331        113 QCQLLMRKAAKA  124 (165)
T ss_pred             HHHHHhCCHHHH
Confidence            555555444433

>KOG2376|consensus

Probab=98.26  E-value=9.4e-05  Score=66.00  Aligned_cols=119  Identities=15%  Similarity=0.172  Sum_probs=93.8

Q ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCC-----------------
Q psy11461         17 LKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEP-----------------   79 (253)
Q Consensus        17 ~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p-----------------   79 (253)
                      .+..+.++|+.++.++|+.+++   ..++.+..+...+|.+++++++|++|...|+..++.+.                 
T Consensus        82 ~fEKAYc~Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~  158 (652)
T KOG2376|consen   82 FFEKAYCEYRLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA  158 (652)
T ss_pred             hHHHHHHHHHcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh
Confidence            3789999999999999999999   56677777899999999999999999999988865432                 


Q ss_pred             -------------C-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhc---ccchHHHHHHHHHHHHHHHHHHH
Q psy11461         80 -------------S-LVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQ---NLNYGDDIACQLRIAKKKRWAET  138 (253)
Q Consensus        80 -------------~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~---~~~~~~~~~~~~~~~~~~~~~~~  138 (253)
                                   . +..-+|+.|-++...|+|.+|++.+.+|++++...   .+...+++...+..++-..+...
T Consensus       159 l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVl  234 (652)
T KOG2376|consen  159 LQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVL  234 (652)
T ss_pred             hhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHH
Confidence                         1 34558999999999999999999999998887652   12224666666666555544433

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.25  E-value=2.3e-06  Score=47.44  Aligned_cols=31  Identities=29%  Similarity=0.532  Sum_probs=13.7

Q ss_pred             HHHHHHHHHHHhhCHHHHHHHHHHHHhhCCC
Q psy11461         50 YFTNRALCYLKLKQYVHCCDDCRKALELEPS   80 (253)
Q Consensus        50 ~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~   80 (253)
                      +|+++|.+|..+|++++|+.+|++|++++|+
T Consensus         3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~   33 (34)
T PF00515_consen    3 AYYNLGNAYFQLGDYEEALEYYQRALELDPD   33 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence            3444444444444444444444444444443

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=98.24  E-value=3.1e-06  Score=50.01  Aligned_cols=42  Identities=24%  Similarity=0.177  Sum_probs=39.7

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q psy11461         15 KELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRAL   56 (253)
Q Consensus        15 ~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~   56 (253)
                      ..+..+|..+...|++++|++.|+++++.+|+++.++..+|.
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            568899999999999999999999999999999999999885

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=98.24  E-value=0.00029  Score=54.47  Aligned_cols=102  Identities=14%  Similarity=0.196  Sum_probs=92.7

Q ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCC--cHHHHHHHHH
Q psy11461         14 DKELKDEGNRYFGLRQYEEAINCYTRAIIK-NPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS--LVKAQFFLGQ   90 (253)
Q Consensus        14 a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~-~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~--~~~a~~~lg~   90 (253)
                      ..-.+.+|+.+...|++.+|...|.+++.- .-.++..+..+|.+.+..+++..|...+++..+-+|.  ++..+..+|.
T Consensus        89 vqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR  168 (251)
T COG4700          89 VQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFAR  168 (251)
T ss_pred             HHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHH
Confidence            445678999999999999999999999864 5678899999999999999999999999999999886  5778899999


Q ss_pred             HHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461         91 ALHEINHYDEAVKHLQRAYDLSREQ  115 (253)
Q Consensus        91 ~~~~~~~~~~A~~~~~~al~l~p~~  115 (253)
                      ++...|++.+|...|+.++...|+.
T Consensus       169 ~laa~g~~a~Aesafe~a~~~ypg~  193 (251)
T COG4700         169 TLAAQGKYADAESAFEVAISYYPGP  193 (251)
T ss_pred             HHHhcCCchhHHHHHHHHHHhCCCH
Confidence            9999999999999999999998874

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.22  E-value=2.1e-05  Score=66.17  Aligned_cols=119  Identities=16%  Similarity=0.042  Sum_probs=84.0

Q ss_pred             cHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh--CHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q psy11461         13 SDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLK--QYVHCCDDCRKALELEPSLVKAQFFLGQ   90 (253)
Q Consensus        13 ~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~--~~~~A~~~~~~al~l~p~~~~a~~~lg~   90 (253)
                      +.......-.++.+.++++.|...++..-+.+.+........|.+.+..|  .+.+|.-.|+......+.++..+..+|.
T Consensus       130 ~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~  209 (290)
T PF04733_consen  130 SLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAV  209 (290)
T ss_dssp             CHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHH
Confidence            34455556677888888888888888887776665444444444444455  5888999999987777888899999999


Q ss_pred             HHHHhCCHHHHHHHHHHHHhhchhcccchHHHHHHHHHHHH
Q psy11461         91 ALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIACQLRIAK  131 (253)
Q Consensus        91 ~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~  131 (253)
                      |+..+|+|++|...+..++..+|.++..+...+......++
T Consensus       210 ~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk  250 (290)
T PF04733_consen  210 CHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGK  250 (290)
T ss_dssp             HHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-
T ss_pred             HHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCC
Confidence            99999999999999999999998886666555554444433

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.22  E-value=8.6e-06  Score=68.53  Aligned_cols=100  Identities=17%  Similarity=0.160  Sum_probs=81.9

Q ss_pred             HHHHHHHHHHhcc--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q psy11461         16 ELKDEGNRYFGLR--QYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALH   93 (253)
Q Consensus        16 ~~~~~g~~~~~~g--~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~   93 (253)
                      .....+...+..|  ++.+|.-.|.+.....+.++..++.+|.|+..+|+|++|...+.+++..+|+++.++.++..+..
T Consensus       167 ~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~  246 (290)
T PF04733_consen  167 TQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSL  246 (290)
T ss_dssp             HHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence            3333444555544  69999999999888888999999999999999999999999999999999999999999999999


Q ss_pred             HhCCH-HHHHHHHHHHHhhchhc
Q psy11461         94 EINHY-DEAVKHLQRAYDLSREQ  115 (253)
Q Consensus        94 ~~~~~-~~A~~~~~~al~l~p~~  115 (253)
                      .+|+. +.+.+++.+....+|++
T Consensus       247 ~~gk~~~~~~~~l~qL~~~~p~h  269 (290)
T PF04733_consen  247 HLGKPTEAAERYLSQLKQSNPNH  269 (290)
T ss_dssp             HTT-TCHHHHHHHHHCHHHTTTS
T ss_pred             HhCCChhHHHHHHHHHHHhCCCC
Confidence            99998 66777888888888876

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG4234|consensus

Probab=98.19  E-value=1.6e-05  Score=61.89  Aligned_cols=74  Identities=28%  Similarity=0.392  Sum_probs=68.0

Q ss_pred             cccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHH
Q psy11461         11 NLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKA   84 (253)
Q Consensus        11 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a   84 (253)
                      ...+-.|.+.|-++++.+++..||...++||.++|.+-.++..||.+|-++.+|++|+.+|.++++++|....+
T Consensus       131 e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ea  204 (271)
T KOG4234|consen  131 EERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRREA  204 (271)
T ss_pred             HHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHH
Confidence            34566788899999999999999999999999999999999999999999999999999999999999976544

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.16  E-value=4.9e-06  Score=46.10  Aligned_cols=34  Identities=32%  Similarity=0.586  Sum_probs=30.7

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461         82 VKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQ  115 (253)
Q Consensus        82 ~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~  115 (253)
                      +++|+++|.++..+|++++|+.+|++|++++|++
T Consensus         1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~   34 (34)
T PF00515_consen    1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred             CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence            4689999999999999999999999999999974

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>KOG4648|consensus

Probab=98.16  E-value=9.3e-06  Score=68.10  Aligned_cols=72  Identities=17%  Similarity=0.171  Sum_probs=64.5

Q ss_pred             HHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhcccchHHH
Q psy11461         51 FTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNYGDD  122 (253)
Q Consensus        51 ~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~  122 (253)
                      .-.+|.-|+++|+|++|+.+|.+++.++|-|+-.+.++|.+|+.+++|..|...+..|+.++.....++...
T Consensus       100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR  171 (536)
T KOG4648|consen  100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRR  171 (536)
T ss_pred             HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHH
Confidence            456899999999999999999999999999999999999999999999999999999999987654444433

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=98.12  E-value=3.1e-05  Score=59.42  Aligned_cols=76  Identities=21%  Similarity=0.244  Sum_probs=58.8

Q ss_pred             CCcccHHHHHHHHHHHHhcc----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhC-----------HHHH
Q psy11461          9 TNNLSDKELKDEGNRYFGLR----------QYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQ-----------YVHC   67 (253)
Q Consensus         9 ~~~~~a~~~~~~g~~~~~~g----------~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~-----------~~~A   67 (253)
                      .+|.++..+.+-|..+....          -+++|+.-|.+||.++|+...++.++|.+|..++.           |++|
T Consensus        20 ~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA   99 (186)
T PF06552_consen   20 KNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKA   99 (186)
T ss_dssp             H-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred             hCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHH
Confidence            46788999999888886553          45678888999999999999999999999998664           8889


Q ss_pred             HHHHHHHHhhCCCcHHH
Q psy11461         68 CDDCRKALELEPSLVKA   84 (253)
Q Consensus        68 ~~~~~~al~l~p~~~~a   84 (253)
                      ..+|++|+..+|+|.-.
T Consensus       100 ~~~FqkAv~~~P~ne~Y  116 (186)
T PF06552_consen  100 TEYFQKAVDEDPNNELY  116 (186)
T ss_dssp             HHHHHHHHHH-TT-HHH
T ss_pred             HHHHHHHHhcCCCcHHH
Confidence            99999999999988543

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.12  E-value=3.2e-05  Score=57.37  Aligned_cols=79  Identities=23%  Similarity=0.344  Sum_probs=70.3

Q ss_pred             CCCCCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHhhC---------------HHHH
Q psy11461          6 NFTTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIP---SYFTNRALCYLKLKQ---------------YVHC   67 (253)
Q Consensus         6 ~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~---~~~~~~a~~~~~~~~---------------~~~A   67 (253)
                      -.|..+-..++...+|..+++.|+|.+|+..|.+-|+++|.++   .+++.+|.+++.+..               ...|
T Consensus        39 ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A  118 (142)
T PF13512_consen   39 RYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQA  118 (142)
T ss_pred             cCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHH
Confidence            3456677788999999999999999999999999999999875   579999999999887               8899


Q ss_pred             HHHHHHHHhhCCCcHHH
Q psy11461         68 CDDCRKALELEPSLVKA   84 (253)
Q Consensus        68 ~~~~~~al~l~p~~~~a   84 (253)
                      ..+|.++|...|++..+
T Consensus       119 ~~~f~~lv~~yP~S~ya  135 (142)
T PF13512_consen  119 FRDFEQLVRRYPNSEYA  135 (142)
T ss_pred             HHHHHHHHHHCcCChhH
Confidence            99999999999998654

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.12  E-value=2.5e-05  Score=63.72  Aligned_cols=82  Identities=13%  Similarity=0.270  Sum_probs=74.9

Q ss_pred             CCCCCCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCc
Q psy11461          5 HNFTTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVI---PSYFTNRALCYLKLKQYVHCCDDCRKALELEPSL   81 (253)
Q Consensus         5 ~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~   81 (253)
                      +-+|.++..+.++|.+|..+|.+|+|.+|...|..+++..|++   ++.++.+|.|...+|+.++|...++++++..|..
T Consensus       169 ~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t  248 (262)
T COG1729         169 KKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGT  248 (262)
T ss_pred             HcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCC
Confidence            3467888899999999999999999999999999999998765   5789999999999999999999999999999998


Q ss_pred             HHHHH
Q psy11461         82 VKAQF   86 (253)
Q Consensus        82 ~~a~~   86 (253)
                      ..+..
T Consensus       249 ~aA~~  253 (262)
T COG1729         249 DAAKL  253 (262)
T ss_pred             HHHHH
Confidence            77654

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=98.10  E-value=5.6e-05  Score=63.46  Aligned_cols=105  Identities=18%  Similarity=0.118  Sum_probs=82.6

Q ss_pred             ccHHHHHHHHHHHHhc-cCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCC----
Q psy11461         12 LSDKELKDEGNRYFGL-RQYEEAINCYTRAIIKNPV------IPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS----   80 (253)
Q Consensus        12 ~~a~~~~~~g~~~~~~-g~~~~A~~~y~~ai~~~p~------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~----   80 (253)
                      ..+..+..+|..|... |+++.|+++|.+|+.....      -..++.+.|.++.++|+|++|+..|+++....-+    
T Consensus       112 ~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~  191 (282)
T PF14938_consen  112 QAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLL  191 (282)
T ss_dssp             HHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTT
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhccccc
Confidence            4577888999999998 9999999999999987321      1346788999999999999999999999875322    


Q ss_pred             --cH-HHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhcc
Q psy11461         81 --LV-KAQFFLGQALHEINHYDEAVKHLQRAYDLSREQN  116 (253)
Q Consensus        81 --~~-~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~  116 (253)
                        +. ..++..+.|++..|++..|...+.+....+|.-.
T Consensus       192 ~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~  230 (282)
T PF14938_consen  192 KYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFA  230 (282)
T ss_dssp             GHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTST
T ss_pred             chhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Confidence              22 3456788899999999999999999999998753

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.10  E-value=9.5e-06  Score=44.77  Aligned_cols=23  Identities=35%  Similarity=0.504  Sum_probs=7.8

Q ss_pred             HHHHHHhhCHHHHHHHHHHHHhh
Q psy11461         55 ALCYLKLKQYVHCCDDCRKALEL   77 (253)
Q Consensus        55 a~~~~~~~~~~~A~~~~~~al~l   77 (253)
                      |.++..+|++++|+.++++++.+
T Consensus         8 g~~~~~~~~~~~A~~~~~~al~l   30 (34)
T PF07719_consen    8 GQAYYQLGNYEEAIEYFEKALEL   30 (34)
T ss_dssp             HHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHH
Confidence            33333333333333333333333

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=98.07  E-value=0.0002  Score=53.83  Aligned_cols=96  Identities=22%  Similarity=0.125  Sum_probs=77.0

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHhCCC----------------------CHHHHHHHHHHHHHhhCHHHHHHHHHH
Q psy11461         16 ELKDEGNRYFGLRQYEEAINCYTRAIIKNPV----------------------IPSYFTNRALCYLKLKQYVHCCDDCRK   73 (253)
Q Consensus        16 ~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~----------------------~~~~~~~~a~~~~~~~~~~~A~~~~~~   73 (253)
                      .+...|......|+...++..+.+++.+...                      ...+...++..+...|++++|+..+.+
T Consensus         8 ~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~   87 (146)
T PF03704_consen    8 ALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQR   87 (146)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence            3444577778889999999999999988421                      113466678888899999999999999


Q ss_pred             HHhhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Q psy11461         74 ALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDL  111 (253)
Q Consensus        74 al~l~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l  111 (253)
                      ++.++|-+-.++..+-.++...|+..+|++.|.+..+.
T Consensus        88 ~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~  125 (146)
T PF03704_consen   88 ALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRR  125 (146)
T ss_dssp             HHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999988654

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.06  E-value=1.3e-05  Score=44.18  Aligned_cols=34  Identities=29%  Similarity=0.486  Sum_probs=30.9

Q ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCC
Q psy11461         14 DKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVI   47 (253)
Q Consensus        14 a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~   47 (253)
                      |..++.+|..++..|+|++|+.+|.+++.++|++
T Consensus         1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            5679999999999999999999999999999975

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.05  E-value=0.00038  Score=50.56  Aligned_cols=67  Identities=22%  Similarity=0.187  Sum_probs=60.5

Q ss_pred             HHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCC---cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461         49 SYFTNRALCYLKLKQYVHCCDDCRKALELEPS---LVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQ  115 (253)
Q Consensus        49 ~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~---~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~  115 (253)
                      .+.+++|.++-.+|+.++|+..|++++.....   -..++..+|.++..+|++++|+..+++++...|++
T Consensus         2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~   71 (120)
T PF12688_consen    2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDD   71 (120)
T ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc
Confidence            47889999999999999999999999997544   35789999999999999999999999999988874

>KOG0495|consensus

Probab=98.03  E-value=0.0006  Score=61.90  Aligned_cols=122  Identities=15%  Similarity=-0.041  Sum_probs=109.5

Q ss_pred             CcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q psy11461         10 NNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLG   89 (253)
Q Consensus        10 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg   89 (253)
                      -|.....|..+|.++-++++.+.|.+.|...+...|.+..+|..++..--+.|....|...+.++.--+|.+...|...-
T Consensus       681 fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~I  760 (913)
T KOG0495|consen  681 FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESI  760 (913)
T ss_pred             CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHH
Confidence            35667789999999999999999999999999999999999999999999999999999999999999999999988888


Q ss_pred             HHHHHhCCHHHHHHHHHHHHhhchhcccchHHHHHHHHHHHH
Q psy11461         90 QALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIACQLRIAK  131 (253)
Q Consensus        90 ~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~  131 (253)
                      ..-+..|+.+.|.....+||+-+|++..-+.+.|+..-+-.+
T Consensus       761 r~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~r  802 (913)
T KOG0495|consen  761 RMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQR  802 (913)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCccc
Confidence            888899999999999999999999987666666665443333

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=97.99  E-value=0.0002  Score=62.62  Aligned_cols=105  Identities=18%  Similarity=0.175  Sum_probs=89.3

Q ss_pred             HHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhCCHHH
Q psy11461         21 GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDE  100 (253)
Q Consensus        21 g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~~~~~~  100 (253)
                      -..+...++++.|+..+++....+|.   ....+|.++...++-.+|++.+.+++...|.+...+...+..+...++++.
T Consensus       176 l~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~l  252 (395)
T PF09295_consen  176 LKYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYEL  252 (395)
T ss_pred             HHHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHH
Confidence            34445578999999999999998876   556689999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhchhcccchHHHHHHHHH
Q psy11461        101 AVKHLQRAYDLSREQNLNYGDDIACQLR  128 (253)
Q Consensus       101 A~~~~~~al~l~p~~~~~~~~~~~~~~~  128 (253)
                      |+...+++..+.|++...+......++.
T Consensus       253 AL~iAk~av~lsP~~f~~W~~La~~Yi~  280 (395)
T PF09295_consen  253 ALEIAKKAVELSPSEFETWYQLAECYIQ  280 (395)
T ss_pred             HHHHHHHHHHhCchhHHHHHHHHHHHHh
Confidence            9999999999999985554444433333

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG3785|consensus

Probab=97.94  E-value=5.8e-05  Score=63.71  Aligned_cols=103  Identities=28%  Similarity=0.301  Sum_probs=82.0

Q ss_pred             cHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHh--------------hC
Q psy11461         13 SDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALE--------------LE   78 (253)
Q Consensus        13 ~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~--------------l~   78 (253)
                      ....-..+|.++|..|+|++|...|+-+...+..++.++.|+|.|++-+|.|.+|.....++-+              ++
T Consensus        56 E~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahkln  135 (557)
T KOG3785|consen   56 EDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLN  135 (557)
T ss_pred             hHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhC
Confidence            3455667899999999999999999999998878889999999999999999999888766532              11


Q ss_pred             C------------CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461         79 P------------SLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQ  115 (253)
Q Consensus        79 p------------~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~  115 (253)
                      .            +...-...+|.+++..-.|.+|+..|.+++.-+|+-
T Consensus       136 dEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey  184 (557)
T KOG3785|consen  136 DEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEY  184 (557)
T ss_pred             cHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhh
Confidence            1            112224456777777788999999999999888774

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=97.89  E-value=0.0075  Score=51.76  Aligned_cols=107  Identities=10%  Similarity=0.024  Sum_probs=89.0

Q ss_pred             cHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCC-CcHHHHHHHHHH
Q psy11461         13 SDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEP-SLVKAQFFLGQA   91 (253)
Q Consensus        13 ~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p-~~~~a~~~lg~~   91 (253)
                      .+......|-.-+..|+|..|+....++-+..+.....|..-|.+--++|+++.+-.++.++-++.+ ++......++..
T Consensus        83 ra~~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarl  162 (400)
T COG3071          83 RARKALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARL  162 (400)
T ss_pred             HHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHH
Confidence            3555666788888899999999999998887777777788888888899999999999999998843 355677888899


Q ss_pred             HHHhCCHHHHHHHHHHHHhhchhcccch
Q psy11461         92 LHEINHYDEAVKHLQRAYDLSREQNLNY  119 (253)
Q Consensus        92 ~~~~~~~~~A~~~~~~al~l~p~~~~~~  119 (253)
                      +...|+++.|...+.++++..|.++...
T Consensus       163 ll~~~d~~aA~~~v~~ll~~~pr~~~vl  190 (400)
T COG3071         163 LLNRRDYPAARENVDQLLEMTPRHPEVL  190 (400)
T ss_pred             HHhCCCchhHHHHHHHHHHhCcCChHHH
Confidence            9999999999999999999999875433

>KOG1130|consensus

Probab=97.86  E-value=2.8e-05  Score=66.73  Aligned_cols=103  Identities=17%  Similarity=0.259  Sum_probs=84.8

Q ss_pred             cHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHhhCHHHHHHHHHHHHhh----CCCc-
Q psy11461         13 SDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPV------IPSYFTNRALCYLKLKQYVHCCDDCRKALEL----EPSL-   81 (253)
Q Consensus        13 ~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l----~p~~-   81 (253)
                      ...++-++||.|+-.|+|+.||..-+.-+.+...      .-.++.|+|.|+.-+|+++.|+++|++.+.+    .... 
T Consensus       194 qGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~v  273 (639)
T KOG1130|consen  194 QGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTV  273 (639)
T ss_pred             hcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhH
Confidence            3456778999999999999999998877766332      3468999999999999999999999987654    3333 


Q ss_pred             -HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461         82 -VKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQ  115 (253)
Q Consensus        82 -~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~  115 (253)
                       ....|.||..|.-+..++.|+.++.+-+.+..+-
T Consensus       274 EAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL  308 (639)
T KOG1130|consen  274 EAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQEL  308 (639)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             3457899999999999999999999999887653

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=97.83  E-value=0.00079  Score=53.39  Aligned_cols=108  Identities=14%  Similarity=0.080  Sum_probs=86.7

Q ss_pred             CCCCCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHH
Q psy11461          6 NFTTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQ   85 (253)
Q Consensus         6 ~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~   85 (253)
                      ...-.|+.+..+.-+|..+...|+|+.|.+.|...++++|.+-.++.|||.+++--|++.-|.+++.+-..-||+++-.-
T Consensus        91 aLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~  170 (297)
T COG4785          91 ALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRS  170 (297)
T ss_pred             hhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHH
Confidence            34567889999999999999999999999999999999999999999999999999999999999999999999988654


Q ss_pred             HHHHHHHHHhCCHHHHHH-HHHHHHhhchh
Q psy11461         86 FFLGQALHEINHYDEAVK-HLQRAYDLSRE  114 (253)
Q Consensus        86 ~~lg~~~~~~~~~~~A~~-~~~~al~l~p~  114 (253)
                      ..+-..-.+ -+..+|.. ..+++..++.+
T Consensus       171 LWLYl~E~k-~dP~~A~tnL~qR~~~~d~e  199 (297)
T COG4785         171 LWLYLNEQK-LDPKQAKTNLKQRAEKSDKE  199 (297)
T ss_pred             HHHHHHHhh-CCHHHHHHHHHHHHHhccHh
Confidence            433222222 24555543 44555555544

>KOG4555|consensus

Probab=97.80  E-value=0.00075  Score=49.20  Aligned_cols=65  Identities=23%  Similarity=0.214  Sum_probs=60.3

Q ss_pred             HHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461         51 FTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQ  115 (253)
Q Consensus        51 ~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~  115 (253)
                      +-..|.+....|+.+.|++.|.+++.+.|.++.+|.++++++.-+|+.++|+..+++|+++..+.
T Consensus        46 LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~  110 (175)
T KOG4555|consen   46 LELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ  110 (175)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc
Confidence            44568888899999999999999999999999999999999999999999999999999997664

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=97.79  E-value=0.00062  Score=48.61  Aligned_cols=94  Identities=20%  Similarity=0.247  Sum_probs=74.7

Q ss_pred             HHHHHHhccCHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHhhCHHHHHHHHHHHHhh-------CCC
Q psy11461         20 EGNRYFGLRQYEEAINCYTRAIIKNPV------------IPSYFTNRALCYLKLKQYVHCCDDCRKALEL-------EPS   80 (253)
Q Consensus        20 ~g~~~~~~g~~~~A~~~y~~ai~~~p~------------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l-------~p~   80 (253)
                      .|...+..|-|++|...|.+|+....+            ++.++..++.++..+|+|++++....+++..       +.+
T Consensus        15 ~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qd   94 (144)
T PF12968_consen   15 DAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQD   94 (144)
T ss_dssp             HHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTST
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccc
Confidence            455667789999999999999987432            3457888999999999999999999888854       444


Q ss_pred             ----cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhch
Q psy11461         81 ----LVKAQFFLGQALHEINHYDEAVKHLQRAYDLSR  113 (253)
Q Consensus        81 ----~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p  113 (253)
                          .+.+.+.+|.++-.+|+.++|+..|+++-++-.
T Consensus        95 eGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEMia  131 (144)
T PF12968_consen   95 EGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEMIA  131 (144)
T ss_dssp             HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Confidence                456788999999999999999999999987643

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.75  E-value=0.0006  Score=57.25  Aligned_cols=103  Identities=19%  Similarity=0.220  Sum_probs=80.7

Q ss_pred             ccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCC--C----CHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCC-----
Q psy11461         12 LSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNP--V----IPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS-----   80 (253)
Q Consensus        12 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p--~----~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~-----   80 (253)
                      ..+..+...|+.|...|+|.+|..+|.++....-  .    -+..|.+.|.+|.+. ++++|+.++.+|+.+.-.     
T Consensus        33 ~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~  111 (282)
T PF14938_consen   33 EAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFS  111 (282)
T ss_dssp             HHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HH
T ss_pred             HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHH
Confidence            3466777888888899999999999999987632  1    234677778887666 999999999999987321     


Q ss_pred             -cHHHHHHHHHHHHHh-CCHHHHHHHHHHHHhhchhc
Q psy11461         81 -LVKAQFFLGQALHEI-NHYDEAVKHLQRAYDLSREQ  115 (253)
Q Consensus        81 -~~~a~~~lg~~~~~~-~~~~~A~~~~~~al~l~p~~  115 (253)
                       -.+++..+|.+|... |++++|+++|++|+.+....
T Consensus       112 ~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e  148 (282)
T PF14938_consen  112 QAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQE  148 (282)
T ss_dssp             HHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC
Confidence             246788999999998 99999999999999986654

>KOG1130|consensus

Probab=97.75  E-value=0.00014  Score=62.56  Aligned_cols=103  Identities=17%  Similarity=0.151  Sum_probs=85.7

Q ss_pred             cHHHHHHHHHHHHhccCHHHHHHHHHHHHHh----CCC--CHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCC------C
Q psy11461         13 SDKELKDEGNRYFGLRQYEEAINCYTRAIIK----NPV--IPSYFTNRALCYLKLKQYVHCCDDCRKALELEP------S   80 (253)
Q Consensus        13 ~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~----~p~--~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p------~   80 (253)
                      .-.++.++||++.-.|+|+.|+++|+..+.+    ...  .+...+.+|..|.-+..+..||.+..+-+.+..      .
T Consensus       234 eRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriG  313 (639)
T KOG1130|consen  234 ERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIG  313 (639)
T ss_pred             HHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            3457788999999999999999999987655    222  455678899999999999999999988776643      2


Q ss_pred             cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461         81 LVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQ  115 (253)
Q Consensus        81 ~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~  115 (253)
                      -..+++.||.++..+|..+.|+.+....+++..+-
T Consensus       314 e~RacwSLgna~~alg~h~kAl~fae~hl~~s~ev  348 (639)
T KOG1130|consen  314 ELRACWSLGNAFNALGEHRKALYFAELHLRSSLEV  348 (639)
T ss_pred             hHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHh
Confidence            45789999999999999999999999988876654

>KOG2796|consensus

Probab=97.75  E-value=0.0013  Score=53.67  Aligned_cols=107  Identities=12%  Similarity=0.079  Sum_probs=93.9

Q ss_pred             CCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHh----CC--CCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcH
Q psy11461          9 TNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIK----NP--VIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLV   82 (253)
Q Consensus         9 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~----~p--~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~   82 (253)
                      .++..+.....+|...++.|+.+.|..+++..-+.    +.  .......|.+.+|...++|.+|...+.+.+..||.++
T Consensus       207 ~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~  286 (366)
T KOG2796|consen  207 YPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNA  286 (366)
T ss_pred             CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCch
Confidence            34677888889999999999999999999844322    22  2445778889999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461         83 KAQFFLGQALHEINHYDEAVKHLQRAYDLSREQ  115 (253)
Q Consensus        83 ~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~  115 (253)
                      .+..+.|.|+..+|+..+|++.+..++...|..
T Consensus       287 ~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~  319 (366)
T KOG2796|consen  287 VANNNKALCLLYLGKLKDALKQLEAMVQQDPRH  319 (366)
T ss_pred             hhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence            999999999999999999999999999999985

>KOG2053|consensus

Probab=97.75  E-value=0.0016  Score=61.02  Aligned_cols=132  Identities=14%  Similarity=0.060  Sum_probs=100.8

Q ss_pred             HHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhCCHHHH
Q psy11461         22 NRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEA  101 (253)
Q Consensus        22 ~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~~~~~~A  101 (253)
                      ......++|..|.....+.++.+|+...+....|..+.++|+.++|..+++..-.+.+++...+-.+-.||..++++++|
T Consensus        17 ~d~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~   96 (932)
T KOG2053|consen   17 YDLLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEA   96 (932)
T ss_pred             HHHhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHH
Confidence            44567899999999999999999999999999999999999999999777777777788888999999999999999999


Q ss_pred             HHHHHHHHhhchhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11461        102 VKHLQRAYDLSREQNLNYGDDIACQLRIAKKKRWAETEEKRIAQEIELLTYLN  154 (253)
Q Consensus       102 ~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  154 (253)
                      ..+|+++...+|+ -..+.......++....+......-+..+..|...-++-
T Consensus        97 ~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfW  148 (932)
T KOG2053|consen   97 VHLYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFW  148 (932)
T ss_pred             HHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHH
Confidence            9999999999998 334444444444444333333222233333444444443

>KOG4642|consensus

Probab=97.71  E-value=0.0001  Score=59.02  Aligned_cols=66  Identities=14%  Similarity=0.161  Sum_probs=60.5

Q ss_pred             HHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhcccc
Q psy11461         53 NRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLN  118 (253)
Q Consensus        53 ~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~~~  118 (253)
                      .-|.+|+.-.+|..|+.+|.+||.++|..+..+.+.+.|++++.+++.+....++|+++.|+....
T Consensus        15 E~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~   80 (284)
T KOG4642|consen   15 EQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKA   80 (284)
T ss_pred             hccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHH
Confidence            346777788899999999999999999999999999999999999999999999999999997443

>KOG2396|consensus

Probab=97.69  E-value=0.0061  Score=53.91  Aligned_cols=91  Identities=14%  Similarity=0.062  Sum_probs=79.6

Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhCC-HHHHHHHHHHHHhh
Q psy11461         33 AINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINH-YDEAVKHLQRAYDL  111 (253)
Q Consensus        33 A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~~~-~~~A~~~~~~al~l  111 (253)
                      -...|+.|+...+.++.+|.+...-..+.+.+.+.-..|.+++..+|+++..|...|.-.+..+. .+.|...|.++++.
T Consensus        90 Iv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~  169 (568)
T KOG2396|consen   90 IVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRF  169 (568)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhc
Confidence            34569999999999999999998888888889999999999999999999999999988888776 99999999999999


Q ss_pred             chhcccchHHHH
Q psy11461        112 SREQNLNYGDDI  123 (253)
Q Consensus       112 ~p~~~~~~~~~~  123 (253)
                      +|+++.-+..-.
T Consensus       170 npdsp~Lw~eyf  181 (568)
T KOG2396|consen  170 NPDSPKLWKEYF  181 (568)
T ss_pred             CCCChHHHHHHH
Confidence            999855444333

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.60  E-value=0.00013  Score=40.08  Aligned_cols=30  Identities=27%  Similarity=0.584  Sum_probs=14.4

Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHhhch
Q psy11461         84 AQFFLGQALHEINHYDEAVKHLQRAYDLSR  113 (253)
Q Consensus        84 a~~~lg~~~~~~~~~~~A~~~~~~al~l~p  113 (253)
                      +|+.+|.++..+|++++|+.+|+++++++|
T Consensus         3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~   32 (34)
T PF13181_consen    3 AYYNLGKIYEQLGDYEEALEYFEKALELNP   32 (34)
T ss_dssp             HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            344444444444444444444444444444

...

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.59  E-value=0.00018  Score=39.57  Aligned_cols=33  Identities=30%  Similarity=0.389  Sum_probs=30.3

Q ss_pred             HHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCc
Q psy11461         49 SYFTNRALCYLKLKQYVHCCDDCRKALELEPSL   81 (253)
Q Consensus        49 ~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~   81 (253)
                      .+|+.+|.+|..+|++++|+..++++++++|+|
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n   34 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            578999999999999999999999999999854

...

>KOG1915|consensus

Probab=97.57  E-value=0.042  Score=48.60  Aligned_cols=103  Identities=12%  Similarity=0.043  Sum_probs=94.5

Q ss_pred             cHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q psy11461         13 SDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQAL   92 (253)
Q Consensus        13 ~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~   92 (253)
                      +...|...|.--..+++++.|...|.+|+..+..+..+|...+.+-++......|...+.+|+.+-|.-.+.||..-..-
T Consensus        72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymE  151 (677)
T KOG1915|consen   72 NMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYME  151 (677)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence            34456667777778899999999999999999999999999999999999999999999999999999999999988888


Q ss_pred             HHhCCHHHHHHHHHHHHhhchhc
Q psy11461         93 HEINHYDEAVKHLQRAYDLSREQ  115 (253)
Q Consensus        93 ~~~~~~~~A~~~~~~al~l~p~~  115 (253)
                      -.+|+...|.+.|.+.+...|+.
T Consensus       152 E~LgNi~gaRqiferW~~w~P~e  174 (677)
T KOG1915|consen  152 EMLGNIAGARQIFERWMEWEPDE  174 (677)
T ss_pred             HHhcccHHHHHHHHHHHcCCCcH
Confidence            88999999999999999999985

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=97.56  E-value=0.0055  Score=47.50  Aligned_cols=100  Identities=26%  Similarity=0.291  Sum_probs=58.7

Q ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHH-
Q psy11461         14 DKELKDEGNRYFGLRQYEEAINCYTRAII--KNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQ-   90 (253)
Q Consensus        14 a~~~~~~g~~~~~~g~~~~A~~~y~~ai~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~-   90 (253)
                      .......+..+...+.+..++..+..++.  ..+.....+...+.++...+.+..++..+..++..++.+.......+. 
T Consensus        59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (291)
T COG0457          59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALG  138 (291)
T ss_pred             hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHH
Confidence            44455555666666666666666666655  455555566666666666666666666666666655555444444444 


Q ss_pred             HHHHhCCHHHHHHHHHHHHhhch
Q psy11461         91 ALHEINHYDEAVKHLQRAYDLSR  113 (253)
Q Consensus        91 ~~~~~~~~~~A~~~~~~al~l~p  113 (253)
                      ++...|+++.|...+.+++...|
T Consensus       139 ~~~~~~~~~~a~~~~~~~~~~~~  161 (291)
T COG0457         139 ALYELGDYEEALELYEKALELDP  161 (291)
T ss_pred             HHHHcCCHHHHHHHHHHHHhcCC
Confidence            56666666666666666655444

>KOG2376|consensus

Probab=97.54  E-value=0.0044  Score=55.71  Aligned_cols=97  Identities=21%  Similarity=0.200  Sum_probs=64.8

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHH---------------------------------HHHHHHHHHh
Q psy11461         15 KELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYF---------------------------------TNRALCYLKL   61 (253)
Q Consensus        15 ~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~---------------------------------~~~a~~~~~~   61 (253)
                      ..++.--+.+...|+|++|.....+.+...|++.+++                                 +..|.|.+++
T Consensus        13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrl   92 (652)
T KOG2376|consen   13 EALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRL   92 (652)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHc
Confidence            4566666677777777777777777777766655443                                 4556666666


Q ss_pred             hCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchh
Q psy11461         62 KQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSRE  114 (253)
Q Consensus        62 ~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~  114 (253)
                      ++.++|+.++.   .+++.+.......|++++.+|+|++|+..|+...+-+.+
T Consensus        93 nk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~d  142 (652)
T KOG2376|consen   93 NKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSD  142 (652)
T ss_pred             ccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCc
Confidence            66666666665   445556667777777777777777777777777665443

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=97.54  E-value=0.0012  Score=57.12  Aligned_cols=129  Identities=14%  Similarity=0.219  Sum_probs=93.5

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHhCC--------CC----------HHHHHHHHHHHHHhhCHHHHHHHHHHHHhh
Q psy11461         16 ELKDEGNRYFGLRQYEEAINCYTRAIIKNP--------VI----------PSYFTNRALCYLKLKQYVHCCDDCRKALEL   77 (253)
Q Consensus        16 ~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p--------~~----------~~~~~~~a~~~~~~~~~~~A~~~~~~al~l   77 (253)
                      +-..-|..+|++++|..|+..|..|+.+..        ..          +..-..+..||+++++.+-|+....+.|-+
T Consensus       178 vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~l  257 (569)
T PF15015_consen  178 VALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINL  257 (569)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhc
Confidence            344466778899999999999999887732        11          134567899999999999999999999999


Q ss_pred             CCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11461         78 EPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIACQLRIAKKKRWAETEEKRIAQEIEL  149 (253)
Q Consensus        78 ~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (253)
                      +|.+...+.+.|.|...+.+|.+|-+.+--+.-+.=-+     ......+...-+..|....++.+.+.+.+
T Consensus       258 nP~~frnHLrqAavfR~LeRy~eAarSamia~ymywl~-----g~~~q~~S~lIklyWqamiEeAiTr~esf  324 (569)
T PF15015_consen  258 NPSYFRNHLRQAAVFRRLERYSEAARSAMIADYMYWLS-----GGSEQRISKLIKLYWQAMIEEAITRAESF  324 (569)
T ss_pred             CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----CCchHhHHHHHHHHHHHHHHHHHhcccce
Confidence            99999999999999999999999988777665432110     00111122234456766666666554443

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=97.53  E-value=0.0014  Score=56.13  Aligned_cols=101  Identities=15%  Similarity=0.031  Sum_probs=77.4

Q ss_pred             cHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q psy11461         13 SDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQAL   92 (253)
Q Consensus        13 ~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~   92 (253)
                      ++......+..+...|++++|.+....++...-+.. +....  -....+++..-++..++.++.+|+++..++.||..+
T Consensus       262 ~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~-L~~~~--~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~  338 (400)
T COG3071         262 DPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR-LCRLI--PRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLA  338 (400)
T ss_pred             ChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh-HHHHH--hhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHH
Confidence            455566688888999999999999999988743322 22222  233567788888888888888888888888888888


Q ss_pred             HHhCCHHHHHHHHHHHHhhchhcc
Q psy11461         93 HEINHYDEAVKHLQRAYDLSREQN  116 (253)
Q Consensus        93 ~~~~~~~~A~~~~~~al~l~p~~~  116 (253)
                      +..+.|.+|..+|+.|+...|+..
T Consensus       339 ~k~~~w~kA~~~leaAl~~~~s~~  362 (400)
T COG3071         339 LKNKLWGKASEALEAALKLRPSAS  362 (400)
T ss_pred             HHhhHHHHHHHHHHHHHhcCCChh
Confidence            888888888888888888888753

>KOG4340|consensus

Probab=97.53  E-value=0.0018  Score=53.71  Aligned_cols=105  Identities=26%  Similarity=0.303  Sum_probs=58.6

Q ss_pred             cccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHh----------h---
Q psy11461         11 NLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALE----------L---   77 (253)
Q Consensus        11 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~----------l---   77 (253)
                      |.+-..+..+|.+|+...+|..|-.||.+.-...|....+..-.|..+++.+.+..|+........          +   
T Consensus        41 p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaA  120 (459)
T KOG4340|consen   41 PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAA  120 (459)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            333445555666666666666666666666666666666555556666666665555544322211          1   


Q ss_pred             -----------------CC--CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461         78 -----------------EP--SLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQ  115 (253)
Q Consensus        78 -----------------~p--~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~  115 (253)
                                       -|  +......+.|-+.++.|+|++|++-|+.|++...-+
T Consensus       121 IkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyq  177 (459)
T KOG4340|consen  121 IKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQ  177 (459)
T ss_pred             HhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCC
Confidence                             11  223334445555666666777777777776665544

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=97.51  E-value=0.0021  Score=45.46  Aligned_cols=92  Identities=20%  Similarity=0.287  Sum_probs=72.3

Q ss_pred             HHHHHHhccCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHhhC-----------HHHHHHHHHHHHhhCCCcHHHH
Q psy11461         20 EGNRYFGLRQYEEAINCYTRAIIKNPVIP---SYFTNRALCYLKLKQ-----------YVHCCDDCRKALELEPSLVKAQ   85 (253)
Q Consensus        20 ~g~~~~~~g~~~~A~~~y~~ai~~~p~~~---~~~~~~a~~~~~~~~-----------~~~A~~~~~~al~l~p~~~~a~   85 (253)
                      .+..++++|++-.|++..+..+..++.+.   .++..-|.++.++..           .-.+++++.++..+.|.....+
T Consensus         2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L   81 (111)
T PF04781_consen    2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL   81 (111)
T ss_pred             hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence            57789999999999999999999988766   556666888766543           4468888889999988887777


Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHhh
Q psy11461         86 FFLGQALHEINHYDEAVKHLQRAYDL  111 (253)
Q Consensus        86 ~~lg~~~~~~~~~~~A~~~~~~al~l  111 (253)
                      +.+|.-+-....|++++.-.+++|.+
T Consensus        82 ~~la~~l~s~~~Ykk~v~kak~~Lsv  107 (111)
T PF04781_consen   82 FELASQLGSVKYYKKAVKKAKRGLSV  107 (111)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence            77777766666677777777777654

>KOG2796|consensus

Probab=97.51  E-value=0.0027  Score=51.84  Aligned_cols=131  Identities=12%  Similarity=0.172  Sum_probs=103.0

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHh----hC--CCcHHHHHHH
Q psy11461         16 ELKDEGNRYFGLRQYEEAINCYTRAIIKN-PVIPSYFTNRALCYLKLKQYVHCCDDCRKALE----LE--PSLVKAQFFL   88 (253)
Q Consensus        16 ~~~~~g~~~~~~g~~~~A~~~y~~ai~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~----l~--p~~~~a~~~l   88 (253)
                      ..+.+.+++...|.|.-....|.+.+..+ |..+.+...+|.+..+.|+.+.|...++++-+    ++  ..+.-.+.+.
T Consensus       179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~  258 (366)
T KOG2796|consen  179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS  258 (366)
T ss_pred             HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence            45668888999999999999999999998 67899999999999999999999999995543    33  2345567778


Q ss_pred             HHHHHHhCCHHHHHHHHHHHHhhchhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11461         89 GQALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIACQLRIAKKKRWAETEEKRIAQE  146 (253)
Q Consensus        89 g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (253)
                      +.++...+++.+|...|.+.+..+|.++......+...+-..+...+....+....+.
T Consensus       259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~  316 (366)
T KOG2796|consen  259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQD  316 (366)
T ss_pred             hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            8888889999999999999999999987766666666555555555544444333333

>KOG1586|consensus

Probab=97.49  E-value=0.013  Score=47.05  Aligned_cols=104  Identities=14%  Similarity=0.229  Sum_probs=65.4

Q ss_pred             CCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcH
Q psy11461          9 TNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNP------VIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLV   82 (253)
Q Consensus         9 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p------~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~   82 (253)
                      ...+.+..+..-||.|...++|..|=..|-++-..+-      +.+..|..-+.||.+ .++.+|+.++.+++.+..+-.
T Consensus        29 k~eeAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk-~~~~eAv~cL~~aieIyt~~G  107 (288)
T KOG1586|consen   29 KYEEAAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKK-VDPEEAVNCLEKAIEIYTDMG  107 (288)
T ss_pred             chHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhc-cChHHHHHHHHHHHHHHHhhh
Confidence            3344455555666666667777777777777765521      134456666666644 377888888888877765432


Q ss_pred             ------HHHHHHHHHHHH-hCCHHHHHHHHHHHHhhch
Q psy11461         83 ------KAQFFLGQALHE-INHYDEAVKHLQRAYDLSR  113 (253)
Q Consensus        83 ------~a~~~lg~~~~~-~~~~~~A~~~~~~al~l~p  113 (253)
                            +.+..+|.+|-. +.+++.|+.+|+.|-+.-.
T Consensus       108 rf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk  145 (288)
T KOG1586|consen  108 RFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYK  145 (288)
T ss_pred             HHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHc
Confidence                  234466766643 4677777777777766644

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=97.49  E-value=0.0014  Score=58.91  Aligned_cols=103  Identities=19%  Similarity=0.138  Sum_probs=70.7

Q ss_pred             CcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHH-
Q psy11461         10 NNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPV----IPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKA-   84 (253)
Q Consensus        10 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~----~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a-   84 (253)
                      -|+.+..++..|..+...|+.++|++.|++++.....    ...+++.+|.|+.-+++|++|..++.+.++.+.= .++ 
T Consensus       263 yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~W-Ska~  341 (468)
T PF10300_consen  263 YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKW-SKAF  341 (468)
T ss_pred             CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcccc-HHHH
Confidence            4666777777888888888888888888877743222    2346777888888888888888888877775433 333 


Q ss_pred             -HHHHHHHHHHhCCH-------HHHHHHHHHHHhhch
Q psy11461         85 -QFFLGQALHEINHY-------DEAVKHLQRAYDLSR  113 (253)
Q Consensus        85 -~~~lg~~~~~~~~~-------~~A~~~~~~al~l~p  113 (253)
                       .|..|.|+..+|+.       ++|...|.++-.+-.
T Consensus       342 Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~  378 (468)
T PF10300_consen  342 YAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQ  378 (468)
T ss_pred             HHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHh
Confidence             34457777777777       666666666665543

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.49  E-value=0.0066  Score=50.35  Aligned_cols=100  Identities=20%  Similarity=0.182  Sum_probs=84.9

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHH----------------------
Q psy11461         16 ELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRK----------------------   73 (253)
Q Consensus        16 ~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~----------------------   73 (253)
                      .-+..+......|++.+|...+..++...|.+..+...+|.||...|+.+.|...+..                      
T Consensus       136 ~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~q  215 (304)
T COG3118         136 EALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQ  215 (304)
T ss_pred             HHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHH
Confidence            3456777889999999999999999999999999999999999999999877766532                      


Q ss_pred             ------------HHhhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461         74 ------------ALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQ  115 (253)
Q Consensus        74 ------------al~l~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~  115 (253)
                                  .+.-+|++..+-+.+|..+...|+.++|.+.+-..++.+.+.
T Consensus       216 aa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~  269 (304)
T COG3118         216 AAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGF  269 (304)
T ss_pred             HhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence                        122278899999999999999999999999888888876654

>KOG4340|consensus

Probab=97.48  E-value=0.0011  Score=55.07  Aligned_cols=86  Identities=17%  Similarity=0.313  Sum_probs=78.9

Q ss_pred             HHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhCCHHHHH
Q psy11461         23 RYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAV  102 (253)
Q Consensus        23 ~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~~~~~~A~  102 (253)
                      .+.+..+|.+||++..--.+.+|.+...+..+|.||+...+|..|..+|++.-.+.|...+..+..++.++..+.+.+|+
T Consensus        19 ~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADAL   98 (459)
T KOG4340|consen   19 RLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADAL   98 (459)
T ss_pred             HHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHH
Confidence            45778899999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHHHHH
Q psy11461        103 KHLQRA  108 (253)
Q Consensus       103 ~~~~~a  108 (253)
                      ......
T Consensus        99 rV~~~~  104 (459)
T KOG4340|consen   99 RVAFLL  104 (459)
T ss_pred             HHHHHh
Confidence            765543

>KOG3785|consensus

Probab=97.45  E-value=0.0079  Score=51.18  Aligned_cols=87  Identities=17%  Similarity=0.170  Sum_probs=74.0

Q ss_pred             HHHHhccCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhCCHHH
Q psy11461         22 NRYFGLRQYEEAINCYTRAIIKNPVI-PSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDE  100 (253)
Q Consensus        22 ~~~~~~g~~~~A~~~y~~ai~~~p~~-~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~~~~~~  100 (253)
                      ..+..+.+|..|+..+.-....+... ...-..+|.|++.+|+|++|...|.-+..-+..+.+.+.++|-|++.+|.|.+
T Consensus        30 edfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~e  109 (557)
T KOG3785|consen   30 EDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIE  109 (557)
T ss_pred             HHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHH
Confidence            45677899999999998887665433 35666789999999999999999999999887888999999999999999999


Q ss_pred             HHHHHHHH
Q psy11461        101 AVKHLQRA  108 (253)
Q Consensus       101 A~~~~~~a  108 (253)
                      |.....+|
T Consensus       110 A~~~~~ka  117 (557)
T KOG3785|consen  110 AKSIAEKA  117 (557)
T ss_pred             HHHHHhhC
Confidence            98766554

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=97.44  E-value=0.0049  Score=47.83  Aligned_cols=97  Identities=24%  Similarity=0.353  Sum_probs=86.4

Q ss_pred             HHHHH-HHHhccCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCC-cHHHHHHHHHHH
Q psy11461         18 KDEGN-RYFGLRQYEEAINCYTRAIIKNP---VIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS-LVKAQFFLGQAL   92 (253)
Q Consensus        18 ~~~g~-~~~~~g~~~~A~~~y~~ai~~~p---~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~-~~~a~~~lg~~~   92 (253)
                      ...+. .++..|+++.|+..|.+++..+|   .....+..++..+...+++..++..+.+++...+. ....+..++.++
T Consensus       133 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (291)
T COG0457         133 ALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLY  212 (291)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHH
Confidence            33444 89999999999999999998777   46677777888888999999999999999999999 799999999999


Q ss_pred             HHhCCHHHHHHHHHHHHhhchh
Q psy11461         93 HEINHYDEAVKHLQRAYDLSRE  114 (253)
Q Consensus        93 ~~~~~~~~A~~~~~~al~l~p~  114 (253)
                      ...+++..|...+..++...|.
T Consensus       213 ~~~~~~~~a~~~~~~~~~~~~~  234 (291)
T COG0457         213 LKLGKYEEALEYYEKALELDPD  234 (291)
T ss_pred             HHcccHHHHHHHHHHHHhhCcc
Confidence            9999999999999999999987

>KOG0546|consensus

Probab=97.37  E-value=0.00051  Score=57.98  Aligned_cols=116  Identities=28%  Similarity=0.286  Sum_probs=95.5

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHhCC-----------C--------CHHHHHHHHHHHHHhhCHHHHHHHHHHHH
Q psy11461         15 KELKDEGNRYFGLRQYEEAINCYTRAIIKNP-----------V--------IPSYFTNRALCYLKLKQYVHCCDDCRKAL   75 (253)
Q Consensus        15 ~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p-----------~--------~~~~~~~~a~~~~~~~~~~~A~~~~~~al   75 (253)
                      ...++.|+..++.++|..|..-|.++...-.           +        -...+.|.+.|-++.+.+..|+..+..++
T Consensus       223 ~~~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~  302 (372)
T KOG0546|consen  223 EKKKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEAL  302 (372)
T ss_pred             hhhhccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceecccccc
Confidence            4566788899999999999999999876521           1        12357788999999999999999999999


Q ss_pred             hhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhcccchHHHHHHHHHHHHHHHH
Q psy11461         76 ELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIACQLRIAKKKRW  135 (253)
Q Consensus        76 ~l~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~  135 (253)
                      ..++...+++|+++.++..+.++++|++.+..+....|++     ..|...+...+.+.+
T Consensus       303 ~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d-----~~i~~~~~~~~~~~~  357 (372)
T KOG0546|consen  303 RDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPND-----KAIEEELENVRQKKK  357 (372)
T ss_pred             ccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcch-----HHHHHHHHHhhhHHH
Confidence            9999999999999999999999999999999999999997     344444444444433

>KOG0545|consensus

Probab=97.37  E-value=0.0043  Score=50.15  Aligned_cols=71  Identities=15%  Similarity=0.185  Sum_probs=59.9

Q ss_pred             HHHHHHHHHHHHHhhCHHHHHHHHHHHHhh--------CCC----------cHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q psy11461         48 PSYFTNRALCYLKLKQYVHCCDDCRKALEL--------EPS----------LVKAQFFLGQALHEINHYDEAVKHLQRAY  109 (253)
Q Consensus        48 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~l--------~p~----------~~~a~~~lg~~~~~~~~~~~A~~~~~~al  109 (253)
                      ..+....|.-+++.|+|.+|...|+.|+..        .|.          +...+.+.++|++..|+|-++++.....+
T Consensus       178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL  257 (329)
T KOG0545|consen  178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL  257 (329)
T ss_pred             hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence            356788899999999999999999998754        232          33468899999999999999999999999


Q ss_pred             hhchhcccc
Q psy11461        110 DLSREQNLN  118 (253)
Q Consensus       110 ~l~p~~~~~  118 (253)
                      +.+|.+..+
T Consensus       258 ~~~~~nvKA  266 (329)
T KOG0545|consen  258 RHHPGNVKA  266 (329)
T ss_pred             hcCCchHHH
Confidence            999998443

>smart00504 Ubox Modified RING finger domain

Probab=97.34  E-value=0.00014  Score=46.37  Aligned_cols=29  Identities=38%  Similarity=0.655  Sum_probs=26.7

Q ss_pred             CCCCCCCCCCCCCCCCcCcHHHHHHHHHH
Q psy11461        215 GHFDPVTRVKLSADQLIPNFAMKEVVDNF  243 (253)
Q Consensus       215 g~~DP~tr~~l~~~~l~pN~~lk~a~~~~  243 (253)
                      +..||+|+++++.++++||..||++|++|
T Consensus        35 ~~~cP~~~~~~~~~~l~~~~~l~~~i~~~   63 (63)
T smart00504       35 HGTDPVTGQPLTHEDLIPNLALKSAIQEW   63 (63)
T ss_pred             CCCCCCCcCCCChhhceeCHHHHHHHHhC
Confidence            35799999999999999999999999976

Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.

>KOG0376|consensus

Probab=97.31  E-value=0.00025  Score=62.11  Aligned_cols=87  Identities=13%  Similarity=0.116  Sum_probs=79.8

Q ss_pred             CCCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHH
Q psy11461          8 TTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFF   87 (253)
Q Consensus         8 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~   87 (253)
                      .-+|..+..+-+.+..+++.++|..|+.-..+||+.+|....+|..+|.++..++++.+|..+++....+.|+.+.+...
T Consensus        32 ~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~  111 (476)
T KOG0376|consen   32 ELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKALLDLEKVKKLAPNDPDATRK  111 (476)
T ss_pred             hcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHHHHHHHhhhcCcCcHHHHHH
Confidence            34667777888889999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             HHHHHHH
Q psy11461         88 LGQALHE   94 (253)
Q Consensus        88 lg~~~~~   94 (253)
                      +..|-..
T Consensus       112 ~~Ec~~~  118 (476)
T KOG0376|consen  112 IDECNKI  118 (476)
T ss_pred             HHHHHHH
Confidence            8777543

>KOG0551|consensus

Probab=97.30  E-value=0.01  Score=50.04  Aligned_cols=73  Identities=18%  Similarity=0.351  Sum_probs=66.6

Q ss_pred             CCCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCC
Q psy11461          8 TTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS   80 (253)
Q Consensus         8 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~   80 (253)
                      ++..-++..|.+++-+.+..|+|..|+...++++..+|.+..++..-|.|++.+.++.+|..+|+..+.++.+
T Consensus       113 ~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e  185 (390)
T KOG0551|consen  113 ADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQIDDE  185 (390)
T ss_pred             CCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHH
Confidence            3445578889999999999999999999999999999999999999999999999999999999999877643

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=97.28  E-value=0.0022  Score=60.69  Aligned_cols=105  Identities=10%  Similarity=-0.031  Sum_probs=70.5

Q ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q psy11461         14 DKELKDEGNRYFGLRQYEEAINCYTRAIIKNPV--IPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQA   91 (253)
Q Consensus        14 a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~--~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~   91 (253)
                      ...+..+...+.+.|.+++|..+|.......+-  +...|..+..+|.+.|++++|.+.+++.- ..| +...|..+..+
T Consensus       426 ~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~-~~p-~~~~~~~Ll~a  503 (697)
T PLN03081        426 HVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAP-FKP-TVNMWAALLTA  503 (697)
T ss_pred             HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCC-CCC-CHHHHHHHHHH
Confidence            455667777777788888888888777654322  33466777777777777777777766542 223 34557777777


Q ss_pred             HHHhCCHHHHHHHHHHHHhhchhcccchH
Q psy11461         92 LHEINHYDEAVKHLQRAYDLSREQNLNYG  120 (253)
Q Consensus        92 ~~~~~~~~~A~~~~~~al~l~p~~~~~~~  120 (253)
                      +...|+++.|...+++.+.+.|++...+.
T Consensus       504 ~~~~g~~~~a~~~~~~l~~~~p~~~~~y~  532 (697)
T PLN03081        504 CRIHKNLELGRLAAEKLYGMGPEKLNNYV  532 (697)
T ss_pred             HHHcCCcHHHHHHHHHHhCCCCCCCcchH
Confidence            77777777777777777777776544433

>PRK10941 hypothetical protein; Provisional

Probab=97.26  E-value=0.0048  Score=51.27  Aligned_cols=69  Identities=12%  Similarity=0.066  Sum_probs=60.2

Q ss_pred             HHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhccc
Q psy11461         49 SYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNL  117 (253)
Q Consensus        49 ~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~~  117 (253)
                      ....|+=.+|...++|+.|+.+.+..+.++|+++.-+.-+|.+|.++|.+..|...++..++.+|+++.
T Consensus       182 Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~  250 (269)
T PRK10941        182 KLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPI  250 (269)
T ss_pred             HHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchh
Confidence            467778888888999999999999999999999988888999999999999999999999999988744

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=97.25  E-value=0.00072  Score=37.84  Aligned_cols=31  Identities=26%  Similarity=0.443  Sum_probs=22.2

Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHhhchh
Q psy11461         84 AQFFLGQALHEINHYDEAVKHLQRAYDLSRE  114 (253)
Q Consensus        84 a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~  114 (253)
                      ++.++|.+|..+|+|++|+.+|++++.+..+
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~   31 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALALARD   31 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence            4667888888888888888888886665544

>PRK10941 hypothetical protein; Provisional

Probab=97.23  E-value=0.0049  Score=51.22  Aligned_cols=77  Identities=19%  Similarity=0.132  Sum_probs=68.9

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q psy11461         15 KELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQA   91 (253)
Q Consensus        15 ~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~   91 (253)
                      ..+.++=..+.+.++++.|+.+....+.++|+++.-+.-||.+|.++|.+..|..+++.-++..|+.+.+-....++
T Consensus       182 Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql  258 (269)
T PRK10941        182 KLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQI  258 (269)
T ss_pred             HHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHH
Confidence            34555667889999999999999999999999999999999999999999999999999999999998887655444

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.23  E-value=0.011  Score=49.56  Aligned_cols=101  Identities=15%  Similarity=-0.018  Sum_probs=85.1

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-hhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q psy11461         15 KELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLK-LKQYVHCCDDCRKALELEPSLVKAQFFLGQALH   93 (253)
Q Consensus        15 ~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~-~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~   93 (253)
                      .+|..+.+...+.+..+.|...|.+|....+....+|...|..-+. .++.+-|...|+.+++..|.+...|.....-+.
T Consensus         2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~   81 (280)
T PF05843_consen    2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLI   81 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence            3577788888888889999999999996666678899999999777 566666999999999999999999999999999


Q ss_pred             HhCCHHHHHHHHHHHHhhchhc
Q psy11461         94 EINHYDEAVKHLQRAYDLSREQ  115 (253)
Q Consensus        94 ~~~~~~~A~~~~~~al~l~p~~  115 (253)
                      ..++.+.|...|++++..-|..
T Consensus        82 ~~~d~~~aR~lfer~i~~l~~~  103 (280)
T PF05843_consen   82 KLNDINNARALFERAISSLPKE  103 (280)
T ss_dssp             HTT-HHHHHHHHHHHCCTSSCH
T ss_pred             HhCcHHHHHHHHHHHHHhcCch
Confidence            9999999999999999886654

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=97.22  E-value=0.00076  Score=36.56  Aligned_cols=27  Identities=26%  Similarity=0.439  Sum_probs=10.3

Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHhhc
Q psy11461         86 FFLGQALHEINHYDEAVKHLQRAYDLS  112 (253)
Q Consensus        86 ~~lg~~~~~~~~~~~A~~~~~~al~l~  112 (253)
                      +.+|.++...|++++|+..|+++++..
T Consensus         4 ~~~a~~~~~~g~~~~A~~~~~~~~~~~   30 (33)
T PF13174_consen    4 YRLARCYYKLGDYDEAIEYFQRLIKRY   30 (33)
T ss_dssp             HHHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence            333333333333333333333333333

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=97.20  E-value=0.038  Score=45.09  Aligned_cols=109  Identities=14%  Similarity=0.181  Sum_probs=89.2

Q ss_pred             CCCCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHh--------hCHHHHHHHHHHHH
Q psy11461          7 FTTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIP---SYFTNRALCYLKL--------KQYVHCCDDCRKAL   75 (253)
Q Consensus         7 ~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~---~~~~~~a~~~~~~--------~~~~~A~~~~~~al   75 (253)
                      .+.+|-..++...++..+++.++|+.|+....+-+.++|.++   -+++.+|.+++..        .-...|+..+...|
T Consensus        64 ~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i  143 (254)
T COG4105          64 HPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELV  143 (254)
T ss_pred             CCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHH
Confidence            456677788999999999999999999999999999998865   4688888888763        33678999999999


Q ss_pred             hhCCCcHHH-----------------HHHHHHHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461         76 ELEPSLVKA-----------------QFFLGQALHEINHYDEAVKHLQRAYDLSREQ  115 (253)
Q Consensus        76 ~l~p~~~~a-----------------~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~  115 (253)
                      ...|++.-+                 =+..|.-|.+.|.+..|+.-++.+++--|+.
T Consensus       144 ~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t  200 (254)
T COG4105         144 QRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDT  200 (254)
T ss_pred             HHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccc
Confidence            999986432                 1335777888899999999999999886664

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=97.20  E-value=0.00077  Score=36.53  Aligned_cols=33  Identities=21%  Similarity=0.354  Sum_probs=30.5

Q ss_pred             HHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCc
Q psy11461         49 SYFTNRALCYLKLKQYVHCCDDCRKALELEPSL   81 (253)
Q Consensus        49 ~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~   81 (253)
                      .+++++|.|+.++|++++|+..+++++...|++
T Consensus         1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s   33 (33)
T PF13174_consen    1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS   33 (33)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence            368899999999999999999999999999975

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=97.19  E-value=0.011  Score=44.84  Aligned_cols=87  Identities=13%  Similarity=0.008  Sum_probs=78.5

Q ss_pred             ccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q psy11461         12 LSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQA   91 (253)
Q Consensus        12 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~   91 (253)
                      .....+..........++.+++...+...-.+.|..+.+-..-|..+...|+|.+|+..++.+..-.|..+.+--.++.|
T Consensus         8 ~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~C   87 (160)
T PF09613_consen    8 EIVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALC   87 (160)
T ss_pred             HHHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence            34557788888889999999999999999999999999999999999999999999999999999999999888889999


Q ss_pred             HHHhCCH
Q psy11461         92 LHEINHY   98 (253)
Q Consensus        92 ~~~~~~~   98 (253)
                      +..+|+.
T Consensus        88 L~~~~D~   94 (160)
T PF09613_consen   88 LYALGDP   94 (160)
T ss_pred             HHHcCCh
Confidence            9888875

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=97.19  E-value=0.0024  Score=39.10  Aligned_cols=35  Identities=31%  Similarity=0.385  Sum_probs=15.8

Q ss_pred             HHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHH
Q psy11461         51 FTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQ   85 (253)
Q Consensus        51 ~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~   85 (253)
                      ++.+|..++++|+|.+|...++.+++++|+|..+.
T Consensus         4 lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~   38 (53)
T PF14853_consen    4 LYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQ   38 (53)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHH
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHH
Confidence            34444444455555555555555555555444443

>KOG3824|consensus

Probab=97.18  E-value=0.0019  Score=53.80  Aligned_cols=79  Identities=15%  Similarity=0.064  Sum_probs=50.6

Q ss_pred             cccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q psy11461         11 NLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLG   89 (253)
Q Consensus        11 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg   89 (253)
                      ...+..-...+....+.|+.+.|...|..|+.+.|+++.++...|...-.-++.-+|-.+|-+|+.++|.|.+|+.+++
T Consensus       113 ~kEA~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~  191 (472)
T KOG3824|consen  113 VKEAILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRA  191 (472)
T ss_pred             hHHHHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhh
Confidence            3344445555556666666666666666666666666666666666666666666666666666666666666666554

>KOG2471|consensus

Probab=97.18  E-value=0.0015  Score=57.52  Aligned_cols=115  Identities=14%  Similarity=0.009  Sum_probs=90.0

Q ss_pred             CCCCCcccHHHHHHHHHHHHhccCHHHHHHHHHHH-HHhCCC--------CHHHHHHHHHHHHHhhCHHHHHHHHHHHHh
Q psy11461          6 NFTTNNLSDKELKDEGNRYFGLRQYEEAINCYTRA-IIKNPV--------IPSYFTNRALCYLKLKQYVHCCDDCRKALE   76 (253)
Q Consensus         6 ~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~a-i~~~p~--------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~   76 (253)
                      ++......+..++..++.++..|+|..|.+.+... |...|.        ...+|+|+|.++++++.|.-+...|.+|+.
T Consensus       232 vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~  311 (696)
T KOG2471|consen  232 VMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALR  311 (696)
T ss_pred             hhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHH
Confidence            34444577888899999999999999999887543 222232        234678999999999999999999999996


Q ss_pred             h---------CC---------CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhcccchH
Q psy11461         77 L---------EP---------SLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNYG  120 (253)
Q Consensus        77 l---------~p---------~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~  120 (253)
                      -         .|         .+....|++|..|...|+.-.|.++|.++...-..++.-+.
T Consensus       312 N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWL  373 (696)
T KOG2471|consen  312 NSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWL  373 (696)
T ss_pred             HHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHH
Confidence            1         11         24567999999999999999999999999998777754433

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=97.15  E-value=0.047  Score=42.54  Aligned_cols=100  Identities=15%  Similarity=0.150  Sum_probs=84.4

Q ss_pred             CcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHH
Q psy11461         10 NNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPV--IPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFF   87 (253)
Q Consensus        10 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~--~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~   87 (253)
                      -..++..+..+++..|..+++..|...+.+..+.+|.  .++.....|.++..+|++.+|...++.++.-.|. +.+...
T Consensus       120 fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~  198 (251)
T COG4700         120 FAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIY  198 (251)
T ss_pred             cCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHH
Confidence            3456788899999999999999999999999999885  5667778899999999999999999999998774 466667


Q ss_pred             HHHHHHHhCCHHHHHHHHHHHHh
Q psy11461         88 LGQALHEINHYDEAVKHLQRAYD  110 (253)
Q Consensus        88 lg~~~~~~~~~~~A~~~~~~al~  110 (253)
                      .+.-+..+|+..+|..-+.....
T Consensus       199 Y~e~La~qgr~~ea~aq~~~v~d  221 (251)
T COG4700         199 YAEMLAKQGRLREANAQYVAVVD  221 (251)
T ss_pred             HHHHHHHhcchhHHHHHHHHHHH
Confidence            78889999988888766555443

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.14  E-value=0.0048  Score=46.21  Aligned_cols=62  Identities=13%  Similarity=0.106  Sum_probs=53.9

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHh
Q psy11461         15 KELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALE   76 (253)
Q Consensus        15 ~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~   76 (253)
                      ..+..++..+...|+++.|+..+.+++..+|.+-.+|..+-.+|..+|+..+|+..|.+...
T Consensus        63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~  124 (146)
T PF03704_consen   63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR  124 (146)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence            45666888889999999999999999999999999999999999999999999999988754

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.11  E-value=0.01  Score=46.31  Aligned_cols=99  Identities=12%  Similarity=-0.023  Sum_probs=77.8

Q ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCC-cHHHHHHHH
Q psy11461         14 DKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVI---PSYFTNRALCYLKLKQYVHCCDDCRKALELEPS-LVKAQFFLG   89 (253)
Q Consensus        14 a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~-~~~a~~~lg   89 (253)
                      ......++..++..|+++.|+..++.++....+.   +.+-.++|.+.+.+|.+++|+..+.....  +. .....-.+|
T Consensus        89 ~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~--~~w~~~~~elrG  166 (207)
T COG2976          89 VLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKE--ESWAAIVAELRG  166 (207)
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc--ccHHHHHHHHhh
Confidence            4456778899999999999999999998653321   34567789999999999999988866543  22 123356789


Q ss_pred             HHHHHhCCHHHHHHHHHHHHhhchh
Q psy11461         90 QALHEINHYDEAVKHLQRAYDLSRE  114 (253)
Q Consensus        90 ~~~~~~~~~~~A~~~~~~al~l~p~  114 (253)
                      .++...|+-.+|...|.+++...++
T Consensus       167 Dill~kg~k~~Ar~ay~kAl~~~~s  191 (207)
T COG2976         167 DILLAKGDKQEARAAYEKALESDAS  191 (207)
T ss_pred             hHHHHcCchHHHHHHHHHHHHccCC
Confidence            9999999999999999999998754

>KOG3081|consensus

Probab=97.10  E-value=0.029  Score=45.98  Aligned_cols=117  Identities=16%  Similarity=0.098  Sum_probs=73.9

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHh---------------------------CCCCHHHHHHHHHHHHHh----hC
Q psy11461         15 KELKDEGNRYFGLRQYEEAINCYTRAIIK---------------------------NPVIPSYFTNRALCYLKL----KQ   63 (253)
Q Consensus        15 ~~~~~~g~~~~~~g~~~~A~~~y~~ai~~---------------------------~p~~~~~~~~~a~~~~~~----~~   63 (253)
                      .....-|..+...|+|++|.........+                           +-++-.....+|.++.+.    ++
T Consensus       109 i~~l~aa~i~~~~~~~deAl~~~~~~~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek  188 (299)
T KOG3081|consen  109 IDLLLAAIIYMHDGDFDEALKALHLGENLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEK  188 (299)
T ss_pred             HHHHHhhHHhhcCCChHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchh
Confidence            34445566777778888887776553211                           111222334445444442    23


Q ss_pred             HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhcccchHHHHHHHHHHHH
Q psy11461         64 YVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIACQLRIAK  131 (253)
Q Consensus        64 ~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~  131 (253)
                      +.+|.-.|+..-.-.|.++......+.|+..+|+|++|...++.++..+++++..+...+......++
T Consensus       189 ~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gk  256 (299)
T KOG3081|consen  189 IQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGK  256 (299)
T ss_pred             hhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCC
Confidence            55555555555554555666677788899999999999999999999998887666666655544443

>PLN03218 maturation of RBCL 1; Provisional

Probab=97.09  E-value=0.031  Score=55.25  Aligned_cols=94  Identities=14%  Similarity=-0.011  Sum_probs=44.4

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhh--CCCcHHHHHHHHHHH
Q psy11461         16 ELKDEGNRYFGLRQYEEAINCYTRAIIKN-PVIPSYFTNRALCYLKLKQYVHCCDDCRKALEL--EPSLVKAQFFLGQAL   92 (253)
Q Consensus        16 ~~~~~g~~~~~~g~~~~A~~~y~~ai~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l--~p~~~~a~~~lg~~~   92 (253)
                      .+..+...|.+.|++++|.+.|......+ +.+...|..+...|.+.|++++|+..|.+....  .| +...|..+..++
T Consensus       581 TynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~P-D~~TynsLI~a~  659 (1060)
T PLN03218        581 TVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKP-DEVFFSALVDVA  659 (1060)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHH
Confidence            34444444555555555555555544443 223444445555555555555555555544432  22 233444444445


Q ss_pred             HHhCCHHHHHHHHHHHHh
Q psy11461         93 HEINHYDEAVKHLQRAYD  110 (253)
Q Consensus        93 ~~~~~~~~A~~~~~~al~  110 (253)
                      ...|++++|.+.+....+
T Consensus       660 ~k~G~~eeA~~l~~eM~k  677 (1060)
T PLN03218        660 GHAGDLDKAFEILQDARK  677 (1060)
T ss_pred             HhCCCHHHHHHHHHHHHH
Confidence            555555555555555444

>smart00028 TPR Tetratricopeptide repeats

Probab=97.07  E-value=0.0013  Score=34.54  Aligned_cols=30  Identities=40%  Similarity=0.533  Sum_probs=15.4

Q ss_pred             HHHHHHHHHHHhhCHHHHHHHHHHHHhhCC
Q psy11461         50 YFTNRALCYLKLKQYVHCCDDCRKALELEP   79 (253)
Q Consensus        50 ~~~~~a~~~~~~~~~~~A~~~~~~al~l~p   79 (253)
                      ++.++|.++..+++++.|+.++.+++.++|
T Consensus         3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~   32 (34)
T smart00028        3 ALYNLGNAYLKLGDYDEALEYYEKALELDP   32 (34)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence            344555555555555555555555555444

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=97.06  E-value=0.014  Score=55.26  Aligned_cols=96  Identities=13%  Similarity=-0.044  Sum_probs=79.4

Q ss_pred             cHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCC--CcHHHHHHHH
Q psy11461         13 SDKELKDEGNRYFGLRQYEEAINCYTRAIIKN-PVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEP--SLVKAQFFLG   89 (253)
Q Consensus        13 ~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p--~~~~a~~~lg   89 (253)
                      +...|..+...|.+.|++++|++.|.+..... .-+...|..+..++.+.|.+++|...++...+..+  -+...|..+.
T Consensus       390 d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li  469 (697)
T PLN03081        390 NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMI  469 (697)
T ss_pred             CeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHH
Confidence            45678899999999999999999999988753 22456688888889999999999999999876432  2445788888


Q ss_pred             HHHHHhCCHHHHHHHHHHH
Q psy11461         90 QALHEINHYDEAVKHLQRA  108 (253)
Q Consensus        90 ~~~~~~~~~~~A~~~~~~a  108 (253)
                      .++...|++++|.+.+++.
T Consensus       470 ~~l~r~G~~~eA~~~~~~~  488 (697)
T PLN03081        470 ELLGREGLLDEAYAMIRRA  488 (697)
T ss_pred             HHHHhcCCHHHHHHHHHHC
Confidence            9999999999999998764

>PLN03218 maturation of RBCL 1; Provisional

Probab=97.04  E-value=0.039  Score=54.54  Aligned_cols=98  Identities=13%  Similarity=-0.028  Sum_probs=55.7

Q ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHh----hCCCcHHHHHHH
Q psy11461         14 DKELKDEGNRYFGLRQYEEAINCYTRAIIKN-PVIPSYFTNRALCYLKLKQYVHCCDDCRKALE----LEPSLVKAQFFL   88 (253)
Q Consensus        14 a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~----l~p~~~~a~~~l   88 (253)
                      ...|..+...|.+.|++++|+..|....... ..+...|..+..+|.+.|++++|...+.+...    +.|+ ...|..+
T Consensus       507 vvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD-~vTynaL  585 (1060)
T PLN03218        507 VHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPD-HITVGAL  585 (1060)
T ss_pred             HHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCc-HHHHHHH
Confidence            4455556666666666666666666654432 12345566666666666666666666666543    2232 3445555


Q ss_pred             HHHHHHhCCHHHHHHHHHHHHhhc
Q psy11461         89 GQALHEINHYDEAVKHLQRAYDLS  112 (253)
Q Consensus        89 g~~~~~~~~~~~A~~~~~~al~l~  112 (253)
                      -.+|...|++++|.+.|....+.+
T Consensus       586 I~ay~k~G~ldeA~elf~~M~e~g  609 (1060)
T PLN03218        586 MKACANAGQVDRAKEVYQMIHEYN  609 (1060)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHcC
Confidence            555666666666666666665543

>KOG3081|consensus

Probab=97.03  E-value=0.016  Score=47.42  Aligned_cols=100  Identities=17%  Similarity=0.200  Sum_probs=83.4

Q ss_pred             HHHHHHHHHH----hccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q psy11461         16 ELKDEGNRYF----GLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQA   91 (253)
Q Consensus        16 ~~~~~g~~~~----~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~   91 (253)
                      .+.++|..+.    ..+++.+|.-.|+..-...|..+......|.|++.+++|++|...++.++.-+++++..+.++-.+
T Consensus       171 tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~  250 (299)
T KOG3081|consen  171 TLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVL  250 (299)
T ss_pred             HHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHH
Confidence            3444555443    356789999999999998899999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCHHHHH-HHHHHHHhhchhc
Q psy11461         92 LHEINHYDEAV-KHLQRAYDLSREQ  115 (253)
Q Consensus        92 ~~~~~~~~~A~-~~~~~al~l~p~~  115 (253)
                      ...+|...++. +.+.+....+|+.
T Consensus       251 a~~~Gkd~~~~~r~l~QLk~~~p~h  275 (299)
T KOG3081|consen  251 ALHLGKDAEVTERNLSQLKLSHPEH  275 (299)
T ss_pred             HHHhCCChHHHHHHHHHHHhcCCcc
Confidence            99999876665 4555555566665

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=97.03  E-value=0.0014  Score=36.63  Aligned_cols=25  Identities=36%  Similarity=0.593  Sum_probs=13.3

Q ss_pred             HHHHHHHHHhccCHHHHHHHHHHHH
Q psy11461         17 LKDEGNRYFGLRQYEEAINCYTRAI   41 (253)
Q Consensus        17 ~~~~g~~~~~~g~~~~A~~~y~~ai   41 (253)
                      +..+|+.+...|+|++|+.+|++++
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~aL   26 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQAL   26 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            4455555555555555555555533

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=97.03  E-value=0.013  Score=51.95  Aligned_cols=95  Identities=17%  Similarity=0.113  Sum_probs=66.7

Q ss_pred             HHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCC------------------
Q psy11461         18 KDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEP------------------   79 (253)
Q Consensus        18 ~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p------------------   79 (253)
                      ...-....+..+...-++.-.+|+.++|+++++|..+|.-.  ..-..+|...++++++...                  
T Consensus       172 q~IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~  249 (539)
T PF04184_consen  172 QEIMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEEE--ASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEA  249 (539)
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhh
Confidence            34556677888888899999999999998888888776532  2224555555555554311                  


Q ss_pred             -----C--cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchh
Q psy11461         80 -----S--LVKAQFFLGQALHEINHYDEAVKHLQRAYDLSRE  114 (253)
Q Consensus        80 -----~--~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~  114 (253)
                           .  .+.+.+++|.|..++|+.++|++.++..++..|.
T Consensus       250 ~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~  291 (539)
T PF04184_consen  250 WHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPN  291 (539)
T ss_pred             hhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCc
Confidence                 0  1234567888888888888888888888887775

The molecular function of this protein is uncertain.

>KOG2471|consensus

Probab=96.99  E-value=0.0012  Score=58.10  Aligned_cols=82  Identities=13%  Similarity=0.040  Sum_probs=71.9

Q ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHHh---------C---------CCCHHHHHHHHHHHHHhhCHHHHHHHHHHHH
Q psy11461         14 DKELKDEGNRYFGLRQYEEAINCYTRAIIK---------N---------PVIPSYFTNRALCYLKLKQYVHCCDDCRKAL   75 (253)
Q Consensus        14 a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~---------~---------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al   75 (253)
                      -..|.++|.++|+.|.|..++.+|.+|++-         .         .....+.+|.|..|+..|++-.|.++|.+++
T Consensus       283 cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av  362 (696)
T KOG2471|consen  283 CIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAV  362 (696)
T ss_pred             heeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHH
Confidence            345678999999999999999999999961         1         1245689999999999999999999999999


Q ss_pred             hhCCCcHHHHHHHHHHHHHh
Q psy11461         76 ELEPSLVKAQFFLGQALHEI   95 (253)
Q Consensus        76 ~l~p~~~~a~~~lg~~~~~~   95 (253)
                      .....|+..|.++|.|+...
T Consensus       363 ~vfh~nPrlWLRlAEcCima  382 (696)
T KOG2471|consen  363 HVFHRNPRLWLRLAECCIMA  382 (696)
T ss_pred             HHHhcCcHHHHHHHHHHHHH
Confidence            99999999999999998754

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=96.96  E-value=0.038  Score=49.81  Aligned_cols=89  Identities=13%  Similarity=0.038  Sum_probs=77.5

Q ss_pred             hccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCC----cHHHHHHHHHHHHHhCCHHHH
Q psy11461         26 GLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS----LVKAQFFLGQALHEINHYDEA  101 (253)
Q Consensus        26 ~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~----~~~a~~~lg~~~~~~~~~~~A  101 (253)
                      .......|.+.+.......|+.+...+..|..+...|+.++|+..+++++.....    ..-.++.+|.++..+++|++|
T Consensus       245 ~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A  324 (468)
T PF10300_consen  245 EDVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEA  324 (468)
T ss_pred             cCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHH
Confidence            3557788999999999999999999999999999999999999999999864433    234688899999999999999


Q ss_pred             HHHHHHHHhhchh
Q psy11461        102 VKHLQRAYDLSRE  114 (253)
Q Consensus       102 ~~~~~~al~l~p~  114 (253)
                      ..+|.+..+.+.-
T Consensus       325 ~~~f~~L~~~s~W  337 (468)
T PF10300_consen  325 AEYFLRLLKESKW  337 (468)
T ss_pred             HHHHHHHHhcccc
Confidence            9999999986543

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PLN03077 Protein ECB2; Provisional

Probab=96.96  E-value=0.013  Score=56.93  Aligned_cols=102  Identities=9%  Similarity=-0.058  Sum_probs=67.7

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q psy11461         16 ELKDEGNRYFGLRQYEEAINCYTRAIIKNP--VIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALH   93 (253)
Q Consensus        16 ~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p--~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~   93 (253)
                      .+..+-..+.+.|.+++|..+|.......+  .+...|..+..++.+.|++++|...+++. .+.|+ ...|..+-.++.
T Consensus       591 T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~  668 (857)
T PLN03077        591 TFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM-PITPD-PAVWGALLNACR  668 (857)
T ss_pred             cHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHH
Confidence            345555667777888888888877764432  23456777777888888888887777664 24443 445555555666


Q ss_pred             HhCCHHHHHHHHHHHHhhchhcccch
Q psy11461         94 EINHYDEAVKHLQRAYDLSREQNLNY  119 (253)
Q Consensus        94 ~~~~~~~A~~~~~~al~l~p~~~~~~  119 (253)
                      ..|+.+.|....++++++.|++...+
T Consensus       669 ~~~~~e~~e~~a~~l~~l~p~~~~~y  694 (857)
T PLN03077        669 IHRHVELGELAAQHIFELDPNSVGYY  694 (857)
T ss_pred             HcCChHHHHHHHHHHHhhCCCCcchH
Confidence            67777777777777777777765443

>KOG4814|consensus

Probab=96.90  E-value=0.016  Score=52.82  Aligned_cols=96  Identities=20%  Similarity=0.262  Sum_probs=85.3

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q psy11461         16 ELKDEGNRYFGLRQYEEAINCYTRAIIKNPVI------PSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLG   89 (253)
Q Consensus        16 ~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg   89 (253)
                      .+.+.|..+|+..+|..+++.|...+...|++      +....+++.||+++.+.+.|.+.+..|-+.+|.++-..+..-
T Consensus       356 iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~  435 (872)
T KOG4814|consen  356 LLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLML  435 (872)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence            46678889999999999999999999887753      457889999999999999999999999999999998888888


Q ss_pred             HHHHHhCCHHHHHHHHHHHHhh
Q psy11461         90 QALHEINHYDEAVKHLQRAYDL  111 (253)
Q Consensus        90 ~~~~~~~~~~~A~~~~~~al~l  111 (253)
                      .+....+.-++|+.+..+....
T Consensus       436 ~~~~~E~~Se~AL~~~~~~~s~  457 (872)
T KOG4814|consen  436 QSFLAEDKSEEALTCLQKIKSS  457 (872)
T ss_pred             HHHHHhcchHHHHHHHHHHHhh
Confidence            8888899999999888776654

>PRK04841 transcriptional regulator MalT; Provisional

Probab=96.89  E-value=0.018  Score=56.17  Aligned_cols=101  Identities=16%  Similarity=0.082  Sum_probs=80.6

Q ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCC-----
Q psy11461         14 DKELKDEGNRYFGLRQYEEAINCYTRAIIKNP--------VIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS-----   80 (253)
Q Consensus        14 a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p--------~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~-----   80 (253)
                      ...+..+|..++..|+++.|...+.+++....        .....+..+|.++...|++++|...+.+++.+...     
T Consensus       531 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~  610 (903)
T PRK04841        531 LWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQ  610 (903)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchH
Confidence            34667788899999999999999999887621        12345667899999999999999999999876332     


Q ss_pred             cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchh
Q psy11461         81 LVKAQFFLGQALHEINHYDEAVKHLQRAYDLSRE  114 (253)
Q Consensus        81 ~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~  114 (253)
                      ...++..+|.++...|++++|...+.++..+.+.
T Consensus       611 ~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~  644 (903)
T PRK04841        611 QLQCLAMLAKISLARGDLDNARRYLNRLENLLGN  644 (903)
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Confidence            3456777899999999999999999999876443

>KOG1070|consensus

Probab=96.87  E-value=0.089  Score=52.12  Aligned_cols=107  Identities=18%  Similarity=-0.008  Sum_probs=76.7

Q ss_pred             CCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHh-CC-------------------------------------CCHHH
Q psy11461          9 TNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIK-NP-------------------------------------VIPSY   50 (253)
Q Consensus         9 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~-~p-------------------------------------~~~~~   50 (253)
                      .+|..+..|..+--.+...++.+.|.+...+|+.. ++                                     +-...
T Consensus      1453 ssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V 1532 (1710)
T KOG1070|consen 1453 SSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTV 1532 (1710)
T ss_pred             cCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHH
Confidence            34555666666666666667777777766666643 11                                     11234


Q ss_pred             HHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461         51 FTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQ  115 (253)
Q Consensus        51 ~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~  115 (253)
                      |..|...|.+.+++++|.+.++.-++-..+..+.|..+|..++...+-+.|...+.+|++.-|..
T Consensus      1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~ 1597 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQ 1597 (1710)
T ss_pred             HHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchh
Confidence            56667777778888888888888888777778888888888888888888888888888888873

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=96.86  E-value=0.021  Score=39.14  Aligned_cols=48  Identities=17%  Similarity=0.080  Sum_probs=27.4

Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCc
Q psy11461         34 INCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSL   81 (253)
Q Consensus        34 ~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~   81 (253)
                      +..+.+.+..+|.+..+.+.+|.++...|++++|+..+-.++..++++
T Consensus         8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~   55 (90)
T PF14561_consen    8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDY   55 (90)
T ss_dssp             HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTC
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence            444555666666666666666666666666666666666666655543

>KOG4507|consensus

Probab=96.83  E-value=0.0046  Score=55.71  Aligned_cols=95  Identities=18%  Similarity=0.173  Sum_probs=85.2

Q ss_pred             HHHHhccCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhCCHHH
Q psy11461         22 NRYFGLRQYEEAINCYTRAIIKNPVIP-SYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDE  100 (253)
Q Consensus        22 ~~~~~~g~~~~A~~~y~~ai~~~p~~~-~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~~~~~~  100 (253)
                      ......|+.-.|+.|+..|+...|... ....++|.+..+.+-.-.|-..+.+++.+....+-.++.+|.+++.+.+.+.
T Consensus       615 lywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~  694 (886)
T KOG4507|consen  615 LYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISG  694 (886)
T ss_pred             ceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHH
Confidence            333457999999999999999988644 4688999999999999999999999999998888899999999999999999


Q ss_pred             HHHHHHHHHhhchhcc
Q psy11461        101 AVKHLQRAYDLSREQN  116 (253)
Q Consensus       101 A~~~~~~al~l~p~~~  116 (253)
                      |++.|+.|+.++|++.
T Consensus       695 a~~~~~~a~~~~~~~~  710 (886)
T KOG4507|consen  695 ALEAFRQALKLTTKCP  710 (886)
T ss_pred             HHHHHHHHHhcCCCCh
Confidence            9999999999999873

>PRK04841 transcriptional regulator MalT; Provisional

Probab=96.81  E-value=0.022  Score=55.46  Aligned_cols=101  Identities=10%  Similarity=-0.028  Sum_probs=82.6

Q ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCC------cH
Q psy11461         14 DKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVI-----PSYFTNRALCYLKLKQYVHCCDDCRKALELEPS------LV   82 (253)
Q Consensus        14 a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~-----~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~------~~   82 (253)
                      ......+|..++..|+++.|...+.+++...+..     ..+...+|.++...|++++|...+.+++.+...      ..
T Consensus       452 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~  531 (903)
T PRK04841        452 AEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYAL  531 (903)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHH
Confidence            4455567888999999999999999999865542     235678899999999999999999999876432      13


Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHhhchh
Q psy11461         83 KAQFFLGQALHEINHYDEAVKHLQRAYDLSRE  114 (253)
Q Consensus        83 ~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~  114 (253)
                      .++..+|.++...|++++|...+.+++.+...
T Consensus       532 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~  563 (903)
T PRK04841        532 WSLLQQSEILFAQGFLQAAYETQEKAFQLIEE  563 (903)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence            46678899999999999999999999987544

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=96.80  E-value=0.011  Score=36.26  Aligned_cols=34  Identities=9%  Similarity=0.316  Sum_probs=29.8

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhcc
Q psy11461         83 KAQFFLGQALHEINHYDEAVKHLQRAYDLSREQN  116 (253)
Q Consensus        83 ~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~  116 (253)
                      ..+|.+|..++.+|+|++|..++..++++.|++.
T Consensus         2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~   35 (53)
T PF14853_consen    2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNR   35 (53)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-H
T ss_pred             hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcH
Confidence            4678999999999999999999999999999983

>KOG1586|consensus

Probab=96.76  E-value=0.22  Score=40.25  Aligned_cols=103  Identities=17%  Similarity=0.157  Sum_probs=64.5

Q ss_pred             cHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHh-hCHHHHHHHHHHHHhhCCC-----
Q psy11461         13 SDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPS------YFTNRALCYLKL-KQYVHCCDDCRKALELEPS-----   80 (253)
Q Consensus        13 ~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~------~~~~~a~~~~~~-~~~~~A~~~~~~al~l~p~-----   80 (253)
                      ++..-+..+..+|+.++..+|+.++.++|.+..+-..      .+..+|..|-.- .++++|+.+|++|-+....     
T Consensus        72 Daat~YveA~~cykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~s  151 (288)
T KOG1586|consen   72 DAATTYVEAANCYKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVS  151 (288)
T ss_pred             hHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhh
Confidence            3333444444455666788888888888777655433      233666666543 6777788887777654321     


Q ss_pred             -cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461         81 -LVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQ  115 (253)
Q Consensus        81 -~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~  115 (253)
                       .-+++...+.....+++|..|+..|.++.+..-++
T Consensus       152 sANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n  187 (288)
T KOG1586|consen  152 SANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDN  187 (288)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence             23456666666677777777777777776655444

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=96.75  E-value=0.029  Score=49.85  Aligned_cols=99  Identities=15%  Similarity=0.100  Sum_probs=57.3

Q ss_pred             HHHHHHHHhccCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHhhCHHHHHHHHHHHHhh-CCCcHHHHHHHHHHHHH
Q psy11461         18 KDEGNRYFGLRQYEEAINCYTRAIIKNPV--IPSYFTNRALCYLKLKQYVHCCDDCRKALEL-EPSLVKAQFFLGQALHE   94 (253)
Q Consensus        18 ~~~g~~~~~~g~~~~A~~~y~~ai~~~p~--~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l-~p~~~~a~~~lg~~~~~   94 (253)
                      ..+|.++.+.|+.++||+.+...++.+|.  +..++.|+..|++.++.|.++...+.+--.+ -|++....|..|.....
T Consensus       263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaR  342 (539)
T PF04184_consen  263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKAR  342 (539)
T ss_pred             HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHH
Confidence            44666777777777777777777766654  3446677777777777777766666653222 14444444444443322


Q ss_pred             -hCC---------------HHHHHHHHHHHHhhchhcc
Q psy11461         95 -INH---------------YDEAVKHLQRAYDLSREQN  116 (253)
Q Consensus        95 -~~~---------------~~~A~~~~~~al~l~p~~~  116 (253)
                       .++               -..|++.+.+|++.+|..+
T Consensus       343 av~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp  380 (539)
T PF04184_consen  343 AVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVP  380 (539)
T ss_pred             hhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCc
Confidence             111               1235566677777766653

The molecular function of this protein is uncertain.

>smart00028 TPR Tetratricopeptide repeats

Probab=96.73  E-value=0.0024  Score=33.42  Aligned_cols=32  Identities=31%  Similarity=0.562  Sum_probs=29.5

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHhhchh
Q psy11461         83 KAQFFLGQALHEINHYDEAVKHLQRAYDLSRE  114 (253)
Q Consensus        83 ~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~  114 (253)
                      .+++.+|.++..++++++|+..+.+++++.|+
T Consensus         2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~   33 (34)
T smart00028        2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN   33 (34)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence            47889999999999999999999999998875

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=96.68  E-value=0.056  Score=45.34  Aligned_cols=104  Identities=14%  Similarity=0.059  Sum_probs=85.0

Q ss_pred             ccHHHHHHHHHHHHh-ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcH---HHHHH
Q psy11461         12 LSDKELKDEGNRYFG-LRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLV---KAQFF   87 (253)
Q Consensus        12 ~~a~~~~~~g~~~~~-~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~---~a~~~   87 (253)
                      .....|...|..-+. .++...|...|+.+++..|.+..+|......+...++.+.|...|++++..-|...   ..|-.
T Consensus        33 ~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~  112 (280)
T PF05843_consen   33 CTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKK  112 (280)
T ss_dssp             S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHH
Confidence            456778888888666 67777799999999999999999999999999999999999999999999876655   45666


Q ss_pred             HHHHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461         88 LGQALHEINHYDEAVKHLQRAYDLSREQ  115 (253)
Q Consensus        88 lg~~~~~~~~~~~A~~~~~~al~l~p~~  115 (253)
                      ...--...|+.+...+...++.+..|++
T Consensus       113 ~i~fE~~~Gdl~~v~~v~~R~~~~~~~~  140 (280)
T PF05843_consen  113 FIEFESKYGDLESVRKVEKRAEELFPED  140 (280)
T ss_dssp             HHHHHHHHS-HHHHHHHHHHHHHHTTTS
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHhhhh
Confidence            6666677799999999999999998874

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>KOG3824|consensus

Probab=96.67  E-value=0.028  Score=47.02  Aligned_cols=71  Identities=18%  Similarity=0.017  Sum_probs=63.3

Q ss_pred             HHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhcccchH
Q psy11461         50 YFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNYG  120 (253)
Q Consensus        50 ~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~  120 (253)
                      +-.+.|.-..+.|+.++|...|..|+.++|+++.++...|+..-..++.-+|-.+|.+|+.++|.+..++.
T Consensus       118 ~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALv  188 (472)
T KOG3824|consen  118 LALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALV  188 (472)
T ss_pred             HHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHh
Confidence            44555666778999999999999999999999999999999999999999999999999999999865543

>KOG1941|consensus

Probab=96.67  E-value=0.36  Score=41.56  Aligned_cols=102  Identities=19%  Similarity=0.208  Sum_probs=85.3

Q ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCC------c
Q psy11461         14 DKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVI------PSYFTNRALCYLKLKQYVHCCDDCRKALELEPS------L   81 (253)
Q Consensus        14 a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~------~   81 (253)
                      ......+|+.+...+.|+.+++.|+.|+.....+      ..++..+|..+..+.++++|.-+..+|.++-..      +
T Consensus       122 gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~  201 (518)
T KOG1941|consen  122 GQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWS  201 (518)
T ss_pred             chhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchh
Confidence            3566779999999999999999999999884432      247889999999999999999999999887432      1


Q ss_pred             ----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461         82 ----VKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQ  115 (253)
Q Consensus        82 ----~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~  115 (253)
                          .-++|.++.++..+|..-+|.++++.+.++.-..
T Consensus       202 ~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~  239 (518)
T KOG1941|consen  202 LKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQH  239 (518)
T ss_pred             HHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHh
Confidence                2357889999999999999999999999886543

>KOG2053|consensus

Probab=96.65  E-value=0.057  Score=51.03  Aligned_cols=107  Identities=13%  Similarity=-0.002  Sum_probs=90.0

Q ss_pred             CCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHH
Q psy11461          9 TNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFL   88 (253)
Q Consensus         9 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l   88 (253)
                      ..|...-+....|..+++.|++++|..+++..-...+++-..+.-+-.||..++++++|...|++++.-+|. ..-++.+
T Consensus        38 k~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-eell~~l  116 (932)
T KOG2053|consen   38 KHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS-EELLYHL  116 (932)
T ss_pred             HCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc-HHHHHHH
Confidence            456666677778899999999999998888877778888888999999999999999999999999999999 8888889


Q ss_pred             HHHHHHhCCHHHHHHHHHHHHhhchhcc
Q psy11461         89 GQALHEINHYDEAVKHLQRAYDLSREQN  116 (253)
Q Consensus        89 g~~~~~~~~~~~A~~~~~~al~l~p~~~  116 (253)
                      -.+|...+.|.+=-+.--+..+.-|+++
T Consensus       117 FmayvR~~~yk~qQkaa~~LyK~~pk~~  144 (932)
T KOG2053|consen  117 FMAYVREKSYKKQQKAALQLYKNFPKRA  144 (932)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCccc
Confidence            9999999988765555555555666654

>KOG1585|consensus

Probab=96.62  E-value=0.063  Score=43.59  Aligned_cols=104  Identities=18%  Similarity=0.168  Sum_probs=78.4

Q ss_pred             ccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHhhCHHHHHHHHHHHHhhC-----CC
Q psy11461         12 LSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIP------SYFTNRALCYLKLKQYVHCCDDCRKALELE-----PS   80 (253)
Q Consensus        12 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~------~~~~~~a~~~~~~~~~~~A~~~~~~al~l~-----p~   80 (253)
                      ..+..+..-+..|...++|++|-.++.+|+..+..+.      ..|-.-|.....+..|.++...+++|..+.     |+
T Consensus        29 gaas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~Gspd  108 (308)
T KOG1585|consen   29 GAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPD  108 (308)
T ss_pred             hhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcc
Confidence            3456667777778889999999999999997755443      356667778888999999999999998873     33


Q ss_pred             cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461         81 LVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQ  115 (253)
Q Consensus        81 ~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~  115 (253)
                      ....-.-.+--..+.-++++|++.|++++.+-..+
T Consensus       109 tAAmaleKAak~lenv~Pd~AlqlYqralavve~~  143 (308)
T KOG1585|consen  109 TAAMALEKAAKALENVKPDDALQLYQRALAVVEED  143 (308)
T ss_pred             hHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcc
Confidence            33333334444567778999999999999886544

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=96.56  E-value=0.041  Score=42.84  Aligned_cols=101  Identities=18%  Similarity=0.131  Sum_probs=78.8

Q ss_pred             ccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCC--cH----
Q psy11461         12 LSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVI---PSYFTNRALCYLKLKQYVHCCDDCRKALELEPS--LV----   82 (253)
Q Consensus        12 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~--~~----   82 (253)
                      ..-..+..+|..|.+.|+++.|+++|.++.......   ...+.+.-.+.+..++|..+.....++-.+-..  +.    
T Consensus        34 sir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~n  113 (177)
T PF10602_consen   34 SIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRN  113 (177)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHH
Confidence            345678899999999999999999999987764432   356788888888999999999999998765322  22    


Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHhhc
Q psy11461         83 KAQFFLGQALHEINHYDEAVKHLQRAYDLS  112 (253)
Q Consensus        83 ~a~~~lg~~~~~~~~~~~A~~~~~~al~l~  112 (253)
                      +....-|..+...++|.+|.+.|..+..-.
T Consensus       114 rlk~~~gL~~l~~r~f~~AA~~fl~~~~t~  143 (177)
T PF10602_consen  114 RLKVYEGLANLAQRDFKEAAELFLDSLSTF  143 (177)
T ss_pred             HHHHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence            223445778888899999999988776544

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=96.56  E-value=0.058  Score=48.79  Aligned_cols=116  Identities=19%  Similarity=-0.025  Sum_probs=91.2

Q ss_pred             CCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHH-HHHHHHHHhhCCCcHHHHHH
Q psy11461          9 TNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHC-CDDCRKALELEPSLVKAQFF   87 (253)
Q Consensus         9 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A-~~~~~~al~l~p~~~~a~~~   87 (253)
                      .++.-....+ +.......++...++.....++..+|.++.++.++|.+....|....+ ..++..+....|++......
T Consensus        63 ~~~~llla~~-lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  141 (620)
T COG3914          63 VNPELLLAAF-LSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGH  141 (620)
T ss_pred             CCHHHHHHHH-HHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhh
Confidence            3333333334 567777889999999999999999999999999999998887765554 45555589999999887766


Q ss_pred             H------HHHHHHhCCHHHHHHHHHHHHhhchhcccchHHHHHH
Q psy11461         88 L------GQALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIAC  125 (253)
Q Consensus        88 l------g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~  125 (253)
                      +      |.....+|+..++...+.++..+.|.++...+..+..
T Consensus       142 ~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~  185 (620)
T COG3914         142 LIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTA  185 (620)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHH
Confidence            6      8888889999999999999999999986655555544

>PLN03077 Protein ECB2; Provisional

Probab=96.49  E-value=0.063  Score=52.19  Aligned_cols=102  Identities=11%  Similarity=0.029  Sum_probs=82.7

Q ss_pred             cccHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCC--CcHHHHH
Q psy11461         11 NLSDKELKDEGNRYFGLRQYEEAINCYTRAIIK--NPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEP--SLVKAQF   86 (253)
Q Consensus        11 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p--~~~~a~~   86 (253)
                      +.+...|..+...|.+.|+.++|+..|++....  .|+. ..|..+-.++.+.|.+++|...++......+  -+...|.
T Consensus       551 ~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~-~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~  629 (857)
T PLN03077        551 EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDE-VTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYA  629 (857)
T ss_pred             CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCc-ccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHH
Confidence            456778999999999999999999999998874  4554 4455566678899999999999999884332  2457888


Q ss_pred             HHHHHHHHhCCHHHHHHHHHHHHhhchh
Q psy11461         87 FLGQALHEINHYDEAVKHLQRAYDLSRE  114 (253)
Q Consensus        87 ~lg~~~~~~~~~~~A~~~~~~al~l~p~  114 (253)
                      .+..++...|++++|.+.+++. .+.|+
T Consensus       630 ~lv~~l~r~G~~~eA~~~~~~m-~~~pd  656 (857)
T PLN03077        630 CVVDLLGRAGKLTEAYNFINKM-PITPD  656 (857)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHC-CCCCC
Confidence            9999999999999999999875 34444

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=96.49  E-value=0.054  Score=40.54  Aligned_cols=85  Identities=9%  Similarity=-0.061  Sum_probs=73.0

Q ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q psy11461         14 DKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALH   93 (253)
Q Consensus        14 a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~   93 (253)
                      ...+..........++..++...+...--+.|..+.+-..-|..+...|+|.+|+..++.+..-.+..+.+.-.++.|+.
T Consensus        10 v~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~   89 (153)
T TIGR02561        10 LGGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLN   89 (153)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHH
Confidence            34555666666778999999999998888899999999999999999999999999999999888888888888899999


Q ss_pred             HhCCH
Q psy11461         94 EINHY   98 (253)
Q Consensus        94 ~~~~~   98 (253)
                      .+|+.
T Consensus        90 al~Dp   94 (153)
T TIGR02561        90 AKGDA   94 (153)
T ss_pred             hcCCh
Confidence            88874

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>KOG1070|consensus

Probab=96.49  E-value=0.066  Score=52.97  Aligned_cols=114  Identities=11%  Similarity=-0.029  Sum_probs=99.5

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCC--cHHHHHHHHHHH
Q psy11461         15 KELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS--LVKAQFFLGQAL   92 (253)
Q Consensus        15 ~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~--~~~a~~~lg~~~   92 (253)
                      ..+..+...|-+.+++++|.++|+..+.........|...|..++.+++-+.|...+.+|+.--|.  +.......|+.-
T Consensus      1531 ~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1531 TVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred             HHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence            356667888889999999999999999998888999999999999999999999999999999898  788889999999


Q ss_pred             HHhCCHHHHHHHHHHHHhhchhcccchHHHHHHHHH
Q psy11461         93 HEINHYDEAVKHLQRAYDLSREQNLNYGDDIACQLR  128 (253)
Q Consensus        93 ~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~  128 (253)
                      ++.|+.+.+...|.-.+.-+|.-.+-+.-.+...++
T Consensus      1611 Fk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik 1646 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIK 1646 (1710)
T ss_pred             hhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHc
Confidence            999999999999999999998865544444444443

>KOG2610|consensus

Probab=96.47  E-value=0.022  Score=48.22  Aligned_cols=98  Identities=13%  Similarity=-0.005  Sum_probs=59.2

Q ss_pred             CcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHh-CCCC---HHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHH
Q psy11461         10 NNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIK-NPVI---PSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQ   85 (253)
Q Consensus        10 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~-~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~   85 (253)
                      .|.+..+++---..+|.+|+...-...+.+.+-. +|+.   +.+.-.+|.++...|-|++|.+..++++++++.+.-+.
T Consensus       133 ~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~  212 (491)
T KOG2610|consen  133 YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQINRFDCWAS  212 (491)
T ss_pred             CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcchHHH
Confidence            3444444555555555566666555555555554 4433   23344456666677777777777777777777776666


Q ss_pred             HHHHHHHHHhCCHHHHHHHHHH
Q psy11461         86 FFLGQALHEINHYDEAVKHLQR  107 (253)
Q Consensus        86 ~~lg~~~~~~~~~~~A~~~~~~  107 (253)
                      ..++.++-..|++.++.+...+
T Consensus       213 Ha~aHVlem~~r~Keg~eFM~~  234 (491)
T KOG2610|consen  213 HAKAHVLEMNGRHKEGKEFMYK  234 (491)
T ss_pred             HHHHHHHHhcchhhhHHHHHHh
Confidence            6666666666666666655443

>KOG2610|consensus

Probab=96.39  E-value=0.064  Score=45.54  Aligned_cols=97  Identities=15%  Similarity=0.093  Sum_probs=82.9

Q ss_pred             HHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhh-CCCc---HHHHHHHHHHHHHh
Q psy11461         20 EGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALEL-EPSL---VKAQFFLGQALHEI   95 (253)
Q Consensus        20 ~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l-~p~~---~~a~~~lg~~~~~~   95 (253)
                      .+-..+.+|++.+|.....+.+...|.+..++..--.+++-+|+...-...+++++-. +++-   ....-.++.++.+.
T Consensus       109 ~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~  188 (491)
T KOG2610|consen  109 KAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEEC  188 (491)
T ss_pred             hHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHh
Confidence            4456788999999999999999999999888887788888899999989999998865 5554   55566678889999


Q ss_pred             CCHHHHHHHHHHHHhhchhcc
Q psy11461         96 NHYDEAVKHLQRAYDLSREQN  116 (253)
Q Consensus        96 ~~~~~A~~~~~~al~l~p~~~  116 (253)
                      |-|++|.+..+++++++|.++
T Consensus       189 g~y~dAEk~A~ralqiN~~D~  209 (491)
T KOG2610|consen  189 GIYDDAEKQADRALQINRFDC  209 (491)
T ss_pred             ccchhHHHHHHhhccCCCcch
Confidence            999999999999999999874

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=96.31  E-value=0.11  Score=45.09  Aligned_cols=86  Identities=13%  Similarity=0.002  Sum_probs=64.3

Q ss_pred             cccHHHHHHHHHHHHh---ccCHHHHHHHHHH-HHHhCCCCHHHHHHHHHHHHH---------hhCHHHHHHHHHHHHhh
Q psy11461         11 NLSDKELKDEGNRYFG---LRQYEEAINCYTR-AIIKNPVIPSYFTNRALCYLK---------LKQYVHCCDDCRKALEL   77 (253)
Q Consensus        11 ~~~a~~~~~~g~~~~~---~g~~~~A~~~y~~-ai~~~p~~~~~~~~~a~~~~~---------~~~~~~A~~~~~~al~l   77 (253)
                      +.....-+.+|..+.+   .|+.+.|+..+.. .....+.++..++.+|.+|..         ....++|+.+|.++..+
T Consensus       176 ~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~  255 (374)
T PF13281_consen  176 ANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI  255 (374)
T ss_pred             hcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC
Confidence            4456667788888888   9999999999999 555567789999999999875         22478899999999999


Q ss_pred             CCCcHHHHHHHHHHHHHhCC
Q psy11461         78 EPSLVKAQFFLGQALHEINH   97 (253)
Q Consensus        78 ~p~~~~a~~~lg~~~~~~~~   97 (253)
                      +|+... =-+++.++...|.
T Consensus       256 ~~~~Y~-GIN~AtLL~~~g~  274 (374)
T PF13281_consen  256 EPDYYS-GINAATLLMLAGH  274 (374)
T ss_pred             Cccccc-hHHHHHHHHHcCC
Confidence            975433 2344445555554

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=96.25  E-value=0.091  Score=42.23  Aligned_cols=92  Identities=22%  Similarity=0.295  Sum_probs=67.5

Q ss_pred             HHhccCHHHHHHHHHHHHHh----CCC---CHHHHHHHHHHHHHhhCHHH-------HHHHHHHHHhhCC------CcHH
Q psy11461         24 YFGLRQYEEAINCYTRAIIK----NPV---IPSYFTNRALCYLKLKQYVH-------CCDDCRKALELEP------SLVK   83 (253)
Q Consensus        24 ~~~~g~~~~A~~~y~~ai~~----~p~---~~~~~~~~a~~~~~~~~~~~-------A~~~~~~al~l~p------~~~~   83 (253)
                      +-....+++|++.|.-|+..    ...   -+.++..+|.+|..+++-+.       |...|.+++....      +...
T Consensus        87 ~~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~  166 (214)
T PF09986_consen   87 FSGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEAT  166 (214)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHH
Confidence            34456788999999988754    112   24577788999998888554       5555555554332      2357


Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461         84 AQFFLGQALHEINHYDEAVKHLQRAYDLSREQ  115 (253)
Q Consensus        84 a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~  115 (253)
                      .+|.+|.++..+|++++|.+.|.+++.....+
T Consensus       167 l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s  198 (214)
T PF09986_consen  167 LLYLIGELNRRLGNYDEAKRWFSRVIGSKKAS  198 (214)
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCC
Confidence            88999999999999999999999999765443

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=96.22  E-value=0.041  Score=37.72  Aligned_cols=50  Identities=24%  Similarity=0.320  Sum_probs=43.3

Q ss_pred             HHHHHHHHHhhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhcc
Q psy11461         67 CCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQN  116 (253)
Q Consensus        67 A~~~~~~al~l~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~  116 (253)
                      .+..+++.+..+|++..+.+.+|.++...|++++|++.+..+++.+++..
T Consensus         7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~   56 (90)
T PF14561_consen    7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYE   56 (90)
T ss_dssp             HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCC
T ss_pred             cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccc
Confidence            46678899999999999999999999999999999999999999998763

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=96.21  E-value=0.0094  Score=47.74  Aligned_cols=61  Identities=16%  Similarity=0.105  Sum_probs=52.1

Q ss_pred             HHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcH
Q psy11461         22 NRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLV   82 (253)
Q Consensus        22 ~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~   82 (253)
                      ......++.+.|.+.|.+++.+-|....-|+.+|....+.|+++.|.+.|+++++++|.+.
T Consensus         3 ~~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~   63 (287)
T COG4976           3 YMLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH   63 (287)
T ss_pred             chhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence            3456778888899999999999999888899999988899999999999999999988754

>KOG1308|consensus

Probab=96.15  E-value=0.0031  Score=53.19  Aligned_cols=73  Identities=18%  Similarity=0.124  Sum_probs=68.4

Q ss_pred             CCCCCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhC
Q psy11461          6 NFTTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELE   78 (253)
Q Consensus         6 ~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~   78 (253)
                      .+.-+|..+..+...|.++.+.++...||.-|..|+.++|+.+.-|-.++.+...+|+|.+|..++..+.+++
T Consensus       140 ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~kld  212 (377)
T KOG1308|consen  140 AIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLALACKLD  212 (377)
T ss_pred             ccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHHHHHhcc
Confidence            4556788899999999999999999999999999999999999999999999999999999999999999875

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=96.10  E-value=0.013  Score=46.98  Aligned_cols=61  Identities=20%  Similarity=0.280  Sum_probs=56.8

Q ss_pred             HHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhcc
Q psy11461         56 LCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQN  116 (253)
Q Consensus        56 ~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~  116 (253)
                      ....+.++.+.+.+.+.+++.+-|.....|+++|...-+.|+++.|.+.|.++++++|.+.
T Consensus         3 ~~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~   63 (287)
T COG4976           3 YMLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH   63 (287)
T ss_pred             chhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence            3455778999999999999999999999999999999999999999999999999999874

>KOG4507|consensus

Probab=96.03  E-value=0.23  Score=45.24  Aligned_cols=103  Identities=14%  Similarity=0.093  Sum_probs=87.6

Q ss_pred             HHHHHHHHHHHh-ccCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q psy11461         15 KELKDEGNRYFG-LRQYEEAINCYTRAIIKNPVIP--SYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQA   91 (253)
Q Consensus        15 ~~~~~~g~~~~~-~g~~~~A~~~y~~ai~~~p~~~--~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~   91 (253)
                      ..+..++-.|++ +|+..+|..||..++-..|...  .....+|.++.+.|...+|--.+..|+.-.|.....+|.+|.+
T Consensus       213 w~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA~~~t~n~y~l~~i  292 (886)
T KOG4507|consen  213 WVLHNMASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVILHAALDDADFFTSNYYTLGNI  292 (886)
T ss_pred             HHHHHHHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccccchhheeehhccCCccccccceeHHHH
Confidence            345566666665 8999999999999998876543  4788899999999999999999988888777777779999999


Q ss_pred             HHHhCCHHHHHHHHHHHHhhchhccc
Q psy11461         92 LHEINHYDEAVKHLQRAYDLSREQNL  117 (253)
Q Consensus        92 ~~~~~~~~~A~~~~~~al~l~p~~~~  117 (253)
                      +..++.+...+..|..+.+.+|....
T Consensus       293 ~aml~~~N~S~~~ydha~k~~p~f~q  318 (886)
T KOG4507|consen  293 YAMLGEYNHSVLCYDHALQARPGFEQ  318 (886)
T ss_pred             HHHHhhhhhhhhhhhhhhccCcchhH
Confidence            99999999999999999999987543

>KOG3364|consensus

Probab=95.94  E-value=0.32  Score=35.86  Aligned_cols=69  Identities=9%  Similarity=0.124  Sum_probs=57.2

Q ss_pred             CHHHHHHHHHHHHHhhC---HHHHHHHHHHHHh-hCCC-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461         47 IPSYFTNRALCYLKLKQ---YVHCCDDCRKALE-LEPS-LVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQ  115 (253)
Q Consensus        47 ~~~~~~~~a~~~~~~~~---~~~A~~~~~~al~-l~p~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~  115 (253)
                      .....+++|.++.+..+   ..+.+..+...++ -+|. .....|+|+..++.+++|+.++.+++..++..|++
T Consensus        31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n  104 (149)
T KOG3364|consen   31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNN  104 (149)
T ss_pred             hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCc
Confidence            34578889999987654   6677888888886 4454 45678999999999999999999999999999998

>KOG1915|consensus

Probab=95.93  E-value=0.14  Score=45.50  Aligned_cols=98  Identities=18%  Similarity=0.057  Sum_probs=68.2

Q ss_pred             cHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q psy11461         13 SDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQAL   92 (253)
Q Consensus        13 ~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~   92 (253)
                      -+..|...|....++.+...|...+-.||-..|.+- ++-..-..-.++++++.+...|.+-|.-.|.|..+|...|..-
T Consensus       403 FaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~K-lFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE  481 (677)
T KOG1915|consen  403 FAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDK-LFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELE  481 (677)
T ss_pred             HHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchh-HHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHH
Confidence            345566666666777777777777777777777643 3333344455677777777777777777777777777777777


Q ss_pred             HHhCCHHHHHHHHHHHHhh
Q psy11461         93 HEINHYDEAVKHLQRAYDL  111 (253)
Q Consensus        93 ~~~~~~~~A~~~~~~al~l  111 (253)
                      ..+|+.+.|...|.-|+.-
T Consensus       482 ~~LgdtdRaRaifelAi~q  500 (677)
T KOG1915|consen  482 TSLGDTDRARAIFELAISQ  500 (677)
T ss_pred             HHhhhHHHHHHHHHHHhcC
Confidence            7777777777777777654

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=95.92  E-value=0.13  Score=42.46  Aligned_cols=68  Identities=15%  Similarity=0.128  Sum_probs=62.6

Q ss_pred             HHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhcc
Q psy11461         49 SYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQN  116 (253)
Q Consensus        49 ~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~  116 (253)
                      ....++=..+...++|+.|..+..+.+.++|+++.-+.-.|.+|.++|.+.-|+..+...++.+|+++
T Consensus       182 rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~  249 (269)
T COG2912         182 RLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDP  249 (269)
T ss_pred             HHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCch
Confidence            45666777888899999999999999999999999999999999999999999999999999999973

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=95.84  E-value=0.022  Score=32.30  Aligned_cols=27  Identities=26%  Similarity=0.247  Sum_probs=12.6

Q ss_pred             HHHHHHHHHHHhhCHHHHHHHHHHHHh
Q psy11461         50 YFTNRALCYLKLKQYVHCCDDCRKALE   76 (253)
Q Consensus        50 ~~~~~a~~~~~~~~~~~A~~~~~~al~   76 (253)
                      ++.++|.+|..+|++++|...+++++.
T Consensus         4 ~~~~la~~~~~~g~~~~A~~~~~~al~   30 (42)
T PF13374_consen    4 ALNNLANAYRAQGRYEEALELLEEALE   30 (42)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence            344445555555555555554444444

>KOG4151|consensus

Probab=95.73  E-value=0.048  Score=50.84  Aligned_cols=103  Identities=32%  Similarity=0.507  Sum_probs=91.5

Q ss_pred             cHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHh--hCHHHHHHHHHHHHhhCCCcHHHHH
Q psy11461         13 SDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPV----IPSYFTNRALCYLKL--KQYVHCCDDCRKALELEPSLVKAQF   86 (253)
Q Consensus        13 ~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~----~~~~~~~~a~~~~~~--~~~~~A~~~~~~al~l~p~~~~a~~   86 (253)
                      .+......|+.+++.++|.+|--.|..++.+-|.    .+..+.+.+.|+..+  ++|..++..+.-|+...|...++++
T Consensus        52 ra~~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll  131 (748)
T KOG4151|consen   52 RALELKEEGNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALL  131 (748)
T ss_pred             HHHHHHhhhhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHh
Confidence            3556788999999999999999999999988774    456788899888875  5899999999999999999999999


Q ss_pred             HHHHHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461         87 FLGQALHEINHYDEAVKHLQRAYDLSREQ  115 (253)
Q Consensus        87 ~lg~~~~~~~~~~~A~~~~~~al~l~p~~  115 (253)
                      .++.+|..++..+-|++.+.-.....|.+
T Consensus       132 ~r~~~y~al~k~d~a~rdl~i~~~~~p~~  160 (748)
T KOG4151|consen  132 KRARKYEALNKLDLAVRDLRIVEKMDPSN  160 (748)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence            99999999999999999988888888887

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=95.73  E-value=0.093  Score=43.26  Aligned_cols=75  Identities=24%  Similarity=0.228  Sum_probs=65.8

Q ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q psy11461         17 LKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQA   91 (253)
Q Consensus        17 ~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~   91 (253)
                      .-++=..+.+.++++.|..+-.+.+.++|.++.-+.-+|.+|.++|.+.-|+.++...+...|+.+.+-...+..
T Consensus       184 l~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~l  258 (269)
T COG2912         184 LRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQL  258 (269)
T ss_pred             HHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHHH
Confidence            334555678899999999999999999999999999999999999999999999999999999988776554443

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=95.67  E-value=0.23  Score=42.57  Aligned_cols=107  Identities=18%  Similarity=0.154  Sum_probs=75.3

Q ss_pred             cccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhh--C-C----
Q psy11461         11 NLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNP----VIPSYFTNRALCYLKLKQYVHCCDDCRKALEL--E-P----   79 (253)
Q Consensus        11 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p----~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l--~-p----   79 (253)
                      ...+..+...+..+.+.|.++.|...+.++...++    ..+.+....|..+...|+..+|+..++..+..  . +    
T Consensus       143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~  222 (352)
T PF02259_consen  143 EELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSI  222 (352)
T ss_pred             hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccc
Confidence            34566777888888888888888888888777652    14566777777888888888888877776661  0 0    


Q ss_pred             ---------------------------CcHHHHHHHHHHHHHh------CCHHHHHHHHHHHHhhchhccc
Q psy11461         80 ---------------------------SLVKAQFFLGQALHEI------NHYDEAVKHLQRAYDLSREQNL  117 (253)
Q Consensus        80 ---------------------------~~~~a~~~lg~~~~~~------~~~~~A~~~~~~al~l~p~~~~  117 (253)
                                                 ...++++.+|.-....      +..++++..|..+.+++|....
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k  293 (352)
T PF02259_consen  223 SNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEK  293 (352)
T ss_pred             cHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHH
Confidence                                       0134677777777777      7788888888888888876543

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=95.65  E-value=0.053  Score=45.48  Aligned_cols=86  Identities=15%  Similarity=0.113  Sum_probs=68.2

Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHH-HHHHHHHhCCHHHHHHHHHHHHhhchhcc
Q psy11461         38 TRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFF-LGQALHEINHYDEAVKHLQRAYDLSREQN  116 (253)
Q Consensus        38 ~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~-lg~~~~~~~~~~~A~~~~~~al~l~p~~~  116 (253)
                      .++....|.++.+|...+..-.+.+.|.+.-..|.+++..+|.|+..|.. .+.-+...++++.+...|.++++++|.++
T Consensus        97 ~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p  176 (435)
T COG5191          97 YRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSP  176 (435)
T ss_pred             ehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCc
Confidence            33444467888888888888888888888899999999999999888876 55667778899999999999999999886


Q ss_pred             cchHHHH
Q psy11461        117 LNYGDDI  123 (253)
Q Consensus       117 ~~~~~~~  123 (253)
                      ..+.+-.
T Consensus       177 ~iw~eyf  183 (435)
T COG5191         177 RIWIEYF  183 (435)
T ss_pred             hHHHHHH
Confidence            5544433

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=95.49  E-value=0.32  Score=42.39  Aligned_cols=95  Identities=18%  Similarity=0.130  Sum_probs=64.5

Q ss_pred             HHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhh--------------C------------CCc---HHHHHHHHHH
Q psy11461         41 IIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALEL--------------E------------PSL---VKAQFFLGQA   91 (253)
Q Consensus        41 i~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l--------------~------------p~~---~~a~~~lg~~   91 (253)
                      +..+|-+...+..++.++..+|++..|...+++|+-.              +            +.|   ..+.++....
T Consensus        33 l~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~  112 (360)
T PF04910_consen   33 LQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQS  112 (360)
T ss_pred             HHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHH
Confidence            4557888888888888888888888888888777532              1            111   2346667777


Q ss_pred             HHHhCCHHHHHHHHHHHHhhchh-cccchHHHHHHHHHHHHHHHH
Q psy11461         92 LHEINHYDEAVKHLQRAYDLSRE-QNLNYGDDIACQLRIAKKKRW  135 (253)
Q Consensus        92 ~~~~~~~~~A~~~~~~al~l~p~-~~~~~~~~~~~~~~~~~~~~~  135 (253)
                      +...|.+..|.+.++-.+.++|. ++....--|.....+++.-.|
T Consensus       113 L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~  157 (360)
T PF04910_consen  113 LGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQW  157 (360)
T ss_pred             HHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHH
Confidence            88888888888888888888888 555444444444444443333

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=95.47  E-value=0.042  Score=31.12  Aligned_cols=30  Identities=27%  Similarity=0.357  Sum_probs=26.9

Q ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Q psy11461         14 DKELKDEGNRYFGLRQYEEAINCYTRAIIK   43 (253)
Q Consensus        14 a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~   43 (253)
                      +..+.++|..+...|+|++|+.++.+++.+
T Consensus         2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence            567899999999999999999999999976

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=95.47  E-value=0.82  Score=40.52  Aligned_cols=53  Identities=26%  Similarity=0.285  Sum_probs=46.7

Q ss_pred             HHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q psy11461         55 ALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRA  108 (253)
Q Consensus        55 a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~a  108 (253)
                      |.-++..|+|.+|.....=..+++| ++.++..+|.|+....+|++|-.++...
T Consensus       469 AEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L  521 (549)
T PF07079_consen  469 AEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL  521 (549)
T ss_pred             HHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence            4456679999999999998999999 9999999999999999999999887743

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>KOG1941|consensus

Probab=95.45  E-value=0.1  Score=44.76  Aligned_cols=104  Identities=13%  Similarity=0.144  Sum_probs=84.9

Q ss_pred             ccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCC----------CHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhC---
Q psy11461         12 LSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPV----------IPSYFTNRALCYLKLKQYVHCCDDCRKALELE---   78 (253)
Q Consensus        12 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~----------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~---   78 (253)
                      ..-+.+..+|..+-+..++++|.-+..+|..+-.+          .....+.++.++..+|....|.++|+++.++.   
T Consensus       160 LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~  239 (518)
T KOG1941|consen  160 LELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQH  239 (518)
T ss_pred             eeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHh
Confidence            34557788999999999999999999999877322          12357788999999999999999999998763   


Q ss_pred             ---CCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461         79 ---PSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQ  115 (253)
Q Consensus        79 ---p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~  115 (253)
                         +.....+.-+|.+|...|+.+.|..-|+.|...-.+-
T Consensus       240 Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~  279 (518)
T KOG1941|consen  240 GDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASL  279 (518)
T ss_pred             CChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhh
Confidence               3345667888999999999999999999998875543

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=95.30  E-value=0.3  Score=40.81  Aligned_cols=57  Identities=16%  Similarity=0.187  Sum_probs=50.6

Q ss_pred             HHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHH
Q psy11461         51 FTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQR  107 (253)
Q Consensus        51 ~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~  107 (253)
                      -..-+.-....|++.+|...+..++...|++..+...++.|+...|+.+.|...+..
T Consensus       137 ~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~  193 (304)
T COG3118         137 ALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAA  193 (304)
T ss_pred             HHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHh
Confidence            444566677899999999999999999999999999999999999999999877664

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=95.29  E-value=0.12  Score=35.67  Aligned_cols=34  Identities=32%  Similarity=0.492  Sum_probs=26.2

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhcc
Q psy11461         83 KAQFFLGQALHEINHYDEAVKHLQRAYDLSREQN  116 (253)
Q Consensus        83 ~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~  116 (253)
                      .++.++|.++...|++++|+..++.|+++.....
T Consensus        42 ~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~   75 (94)
T PF12862_consen   42 YALLNLAELHRRFGHYEEALQALEEAIRLARENG   75 (94)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHC
Confidence            4567778888888888888888888888876653

>KOG2396|consensus

Probab=95.20  E-value=0.17  Score=45.10  Aligned_cols=75  Identities=13%  Similarity=0.037  Sum_probs=67.9

Q ss_pred             ccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhC-HHHHHHHHHHHHhhCCCcHHHHH
Q psy11461         12 LSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQ-YVHCCDDCRKALELEPSLVKAQF   86 (253)
Q Consensus        12 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~-~~~A~~~~~~al~l~p~~~~a~~   86 (253)
                      .+...|......+.+.+.+..--..|.+++..+|+++.+|..-|.-.+..+. .+.|...+.+++..+|++++.|.
T Consensus       103 ~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw~  178 (568)
T KOG2396|consen  103 GDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLWK  178 (568)
T ss_pred             CCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHHH
Confidence            3677888888888888889999999999999999999999999999888886 99999999999999999998754

>KOG3364|consensus

Probab=95.09  E-value=0.5  Score=34.85  Aligned_cols=76  Identities=18%  Similarity=0.116  Sum_probs=61.6

Q ss_pred             cHHHHHHHHHHHHhcc---CHHHHHHHHHHHHH-hCCC-CHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHH
Q psy11461         13 SDKELKDEGNRYFGLR---QYEEAINCYTRAII-KNPV-IPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFF   87 (253)
Q Consensus        13 ~a~~~~~~g~~~~~~g---~~~~A~~~y~~ai~-~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~   87 (253)
                      ..+..++++..+.+..   +..+.|.+++..+. .+|. .-.+.+-+|..++++++|+.++.+++..++..|+|..+.-.
T Consensus        31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~L  110 (149)
T KOG3364|consen   31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALEL  110 (149)
T ss_pred             hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence            4556788888887765   45689999999996 5554 34577889999999999999999999999999999887654


Q ss_pred             H
Q psy11461         88 L   88 (253)
Q Consensus        88 l   88 (253)
                      .
T Consensus       111 k  111 (149)
T KOG3364|consen  111 K  111 (149)
T ss_pred             H
Confidence            3

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=94.93  E-value=0.5  Score=41.13  Aligned_cols=105  Identities=10%  Similarity=0.055  Sum_probs=83.9

Q ss_pred             cccHHHHHHHHHHHHhccCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHH---hhCHHHHHHHHHHH-HhhCCCcH
Q psy11461         11 NLSDKELKDEGNRYFGLRQYEEAINCYTRAIIK----NPVIPSYFTNRALCYLK---LKQYVHCCDDCRKA-LELEPSLV   82 (253)
Q Consensus        11 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~----~p~~~~~~~~~a~~~~~---~~~~~~A~~~~~~a-l~l~p~~~   82 (253)
                      -.++....++--.|....+|+.-+......-..    -+..+...+.+|.++-+   .|+.++|+..+..+ ....+.++
T Consensus       138 ~ls~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~  217 (374)
T PF13281_consen  138 LLSPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDP  217 (374)
T ss_pred             hcChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCCh
Confidence            344556667777788899999999988877665    44567778888999998   99999999999995 45567788


Q ss_pred             HHHHHHHHHHHHh---------CCHHHHHHHHHHHHhhchhc
Q psy11461         83 KAQFFLGQALHEI---------NHYDEAVKHLQRAYDLSREQ  115 (253)
Q Consensus        83 ~a~~~lg~~~~~~---------~~~~~A~~~~~~al~l~p~~  115 (253)
                      ..+..+|.+|..+         ...+.|+..|.++.+++|+-
T Consensus       218 d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~  259 (374)
T PF13281_consen  218 DTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY  259 (374)
T ss_pred             HHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc
Confidence            9999999888655         24788999999999999754

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=94.90  E-value=0.26  Score=33.95  Aligned_cols=57  Identities=16%  Similarity=0.153  Sum_probs=46.9

Q ss_pred             HHHhccCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCC
Q psy11461         23 RYFGLRQYEEAINCYTRAIIKNPV---------IPSYFTNRALCYLKLKQYVHCCDDCRKALELEP   79 (253)
Q Consensus        23 ~~~~~g~~~~A~~~y~~ai~~~p~---------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p   79 (253)
                      ...+.|+|..|++.+.+.......         ...+..++|.++...|++++|+..+++|+.+-.
T Consensus         7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Ar   72 (94)
T PF12862_consen    7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAR   72 (94)
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            457899999999998888766322         235678899999999999999999999998743

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=94.78  E-value=2.3  Score=36.32  Aligned_cols=67  Identities=15%  Similarity=0.173  Sum_probs=51.4

Q ss_pred             CCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCC----cHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q psy11461         44 NPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS----LVKAQFFLGQALHEINHYDEAVKHLQRAYD  110 (253)
Q Consensus        44 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~----~~~a~~~lg~~~~~~~~~~~A~~~~~~al~  110 (253)
                      .......+...+.+..+.|+++-|...+.++...++.    .+...+..+..+...|+..+|+..++..+.
T Consensus       142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~  212 (352)
T PF02259_consen  142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK  212 (352)
T ss_pred             hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            4556677888888888888888888888888775521    456777778888888888888888877776

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=94.75  E-value=0.07  Score=44.81  Aligned_cols=77  Identities=12%  Similarity=0.080  Sum_probs=69.0

Q ss_pred             cccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHH
Q psy11461         11 NLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTN-RALCYLKLKQYVHCCDDCRKALELEPSLVKAQFF   87 (253)
Q Consensus        11 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~-~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~   87 (253)
                      +.++..|...++...+.|.|..--..|.+++..+|.++++|.. .+.-+...++++.+...+.+++.++|++++.|+.
T Consensus       104 f~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~e  181 (435)
T COG5191         104 FNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIE  181 (435)
T ss_pred             CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHH
Confidence            5678889999999999999999999999999999999999887 5667778899999999999999999999987643

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=94.58  E-value=0.64  Score=30.81  Aligned_cols=62  Identities=13%  Similarity=0.146  Sum_probs=38.1

Q ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHH---HHHHHHHHHhhCHHHHHHHHHHHH
Q psy11461         14 DKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYF---TNRALCYLKLKQYVHCCDDCRKAL   75 (253)
Q Consensus        14 a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~---~~~a~~~~~~~~~~~A~~~~~~al   75 (253)
                      +......|..++...+.++|+..+++++...++.+.-+   -.+..+|...|+|.+++.+..+=+
T Consensus         6 ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~   70 (80)
T PF10579_consen    6 AKQQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQL   70 (80)
T ss_pred             HHHHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44556667777777777777777777777766655433   334455556666666665554433

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=94.31  E-value=1.8  Score=33.02  Aligned_cols=111  Identities=11%  Similarity=0.100  Sum_probs=76.5

Q ss_pred             HHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhcccchHHHHH-HHH
Q psy11461         49 SYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIA-CQL  127 (253)
Q Consensus        49 ~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~-~~~  127 (253)
                      ..+.....+-...++.+++...+...-.+.|..+..-..-|..+...|+|.+|+..|+.+..-.|..+.  ..... .-+
T Consensus        11 ~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~--~kALlA~CL   88 (160)
T PF09613_consen   11 GGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPY--AKALLALCL   88 (160)
T ss_pred             HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChH--HHHHHHHHH
Confidence            345556666677889999999998888899999999999999999999999999999998777776532  22211 112


Q ss_pred             HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Q psy11461        128 RIAKKKRWAETEEKRIA--QEIELLTYLNRLITEDA  161 (253)
Q Consensus       128 ~~~~~~~~~~~~~~~~~--~~~~~~~~l~~l~~~~~  161 (253)
                      .......|.....+...  .++.....+..++..+-
T Consensus        89 ~~~~D~~Wr~~A~evle~~~d~~a~~Lv~~Ll~~~~  124 (160)
T PF09613_consen   89 YALGDPSWRRYADEVLESGADPDARALVRALLARAD  124 (160)
T ss_pred             HHcCChHHHHHHHHHHhcCCChHHHHHHHHHHHhcc
Confidence            33333455554443333  24555666666655443

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=94.23  E-value=0.098  Score=29.54  Aligned_cols=27  Identities=19%  Similarity=0.434  Sum_probs=13.8

Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHhh
Q psy11461         85 QFFLGQALHEINHYDEAVKHLQRAYDL  111 (253)
Q Consensus        85 ~~~lg~~~~~~~~~~~A~~~~~~al~l  111 (253)
                      +..||.+....++|++|+..|.+++.+
T Consensus         4 ~~~Lgeisle~e~f~qA~~D~~~aL~i   30 (38)
T PF10516_consen    4 YDLLGEISLENENFEQAIEDYEKALEI   30 (38)
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            444555555555555555555555544

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>KOG3617|consensus

Probab=94.19  E-value=0.64  Score=44.23  Aligned_cols=96  Identities=17%  Similarity=0.127  Sum_probs=75.7

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHH----------HHhCC----------CCHHHHHHHHHHHHHhhCHHHHHHHHHHH
Q psy11461         15 KELKDEGNRYFGLRQYEEAINCYTRA----------IIKNP----------VIPSYFTNRALCYLKLKQYVHCCDDCRKA   74 (253)
Q Consensus        15 ~~~~~~g~~~~~~g~~~~A~~~y~~a----------i~~~p----------~~~~~~~~~a~~~~~~~~~~~A~~~~~~a   74 (253)
                      ..+++.+..+-.+++...|+++|.++          +..+|          .+..+|.--|..+-..|+.+.|+..|..|
T Consensus       859 ~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A  938 (1416)
T KOG3617|consen  859 NTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSA  938 (1416)
T ss_pred             hhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHh
Confidence            46888999999999999999999886          22344          35567777788888899999999888776


Q ss_pred             Hhh---------------------CCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q psy11461         75 LEL---------------------EPSLVKAQFFLGQALHEINHYDEAVKHLQRAYD  110 (253)
Q Consensus        75 l~l---------------------~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~  110 (253)
                      -..                     ...+..|.|.+|.-|-..|++.+|+..|.+|..
T Consensus       939 ~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa  995 (1416)
T KOG3617|consen  939 KDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQA  995 (1416)
T ss_pred             hhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence            433                     234667899999999999999999988877543

>KOG1585|consensus

Probab=94.15  E-value=2.7  Score=34.44  Aligned_cols=97  Identities=14%  Similarity=0.060  Sum_probs=65.1

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCc---HHH--
Q psy11461         15 KELKDEGNRYFGLRQYEEAINCYTRAIIK-----NPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSL---VKA--   84 (253)
Q Consensus        15 ~~~~~~g~~~~~~g~~~~A~~~y~~ai~~-----~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~---~~a--   84 (253)
                      ..+-..|...-....+.++..+|.+|..+     .|+.+..-..+|.=....-++++|++.|++++.+-...   ..+  
T Consensus        72 KayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~e  151 (308)
T KOG1585|consen   72 KAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFE  151 (308)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHH
Confidence            34444555555677888888888888876     35555555555666667778999999999988764332   223  


Q ss_pred             -HHHHHHHHHHhCCHHHHHHHHHHHHhh
Q psy11461         85 -QFFLGQALHEINHYDEAVKHLQRAYDL  111 (253)
Q Consensus        85 -~~~lg~~~~~~~~~~~A~~~~~~al~l  111 (253)
                       +-..+.++....++++|-..+.+-..+
T Consensus       152 l~gk~sr~lVrl~kf~Eaa~a~lKe~~~  179 (308)
T KOG1585|consen  152 LYGKCSRVLVRLEKFTEAATAFLKEGVA  179 (308)
T ss_pred             HHHHhhhHhhhhHHhhHHHHHHHHhhhH
Confidence             344566688888898887777764433

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=94.10  E-value=1.1  Score=39.14  Aligned_cols=102  Identities=17%  Similarity=0.151  Sum_probs=78.9

Q ss_pred             ccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC---CC-----CHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHH
Q psy11461         12 LSDKELKDEGNRYFGLRQYEEAINCYTRAIIKN---PV-----IPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVK   83 (253)
Q Consensus        12 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~---p~-----~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~   83 (253)
                      .-..++...-......|+|+.|+++........   +.     -..++...|..... .+...|..+..+++++.|+...
T Consensus       186 ~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ld-adp~~Ar~~A~~a~KL~pdlvP  264 (531)
T COG3898         186 QLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLD-ADPASARDDALEANKLAPDLVP  264 (531)
T ss_pred             CCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhc-CChHHHHHHHHHHhhcCCccch
Confidence            334455555566788999999999987765442   21     22344444444433 3588899999999999999999


Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHhhchh
Q psy11461         84 AQFFLGQALHEINHYDEAVKHLQRAYDLSRE  114 (253)
Q Consensus        84 a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~  114 (253)
                      +-..-+.+++..|+..++-..++.+-+..|.
T Consensus       265 aav~AAralf~d~~~rKg~~ilE~aWK~ePH  295 (531)
T COG3898         265 AAVVAARALFRDGNLRKGSKILETAWKAEPH  295 (531)
T ss_pred             HHHHHHHHHHhccchhhhhhHHHHHHhcCCC
Confidence            9999999999999999999999999999887

>KOG2300|consensus

Probab=94.07  E-value=1.5  Score=39.23  Aligned_cols=99  Identities=15%  Similarity=0.114  Sum_probs=77.0

Q ss_pred             cccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCc------
Q psy11461         11 NLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPV---IPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSL------   81 (253)
Q Consensus        11 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~------   81 (253)
                      ...++..+.+|..+..-+.|+.|...|..|++....   .+.+-.|+|..|+..++-+.--+.++.   +.|.|      
T Consensus       364 ~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~---i~p~nt~s~ss  440 (629)
T KOG2300|consen  364 AHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDL---IGPLNTNSLSS  440 (629)
T ss_pred             HhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHh---cCCCCCCcchH
Confidence            456788899999999999999999999999987543   234667789999998875543333322   33432      


Q ss_pred             ----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhc
Q psy11461         82 ----VKAQFFLGQALHEINHYDEAVKHLQRAYDLS  112 (253)
Q Consensus        82 ----~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~  112 (253)
                          ..++|..|.-.+..+++.||...+++.++..
T Consensus       441 q~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma  475 (629)
T KOG2300|consen  441 QRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA  475 (629)
T ss_pred             HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence                2457888999999999999999999999986

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=94.03  E-value=0.24  Score=27.60  Aligned_cols=31  Identities=19%  Similarity=0.269  Sum_probs=17.7

Q ss_pred             HHHHHHHHHHhccCHHHHHHH--HHHHHHhCCC
Q psy11461         16 ELKDEGNRYFGLRQYEEAINC--YTRAIIKNPV   46 (253)
Q Consensus        16 ~~~~~g~~~~~~g~~~~A~~~--y~~ai~~~p~   46 (253)
                      .++.+|..++.+|+|++|+..  |.-+..+++.
T Consensus         3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~   35 (36)
T PF07720_consen    3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY   35 (36)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence            455566666666666666666  3355555543

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=94.00  E-value=0.33  Score=40.19  Aligned_cols=62  Identities=15%  Similarity=0.059  Sum_probs=52.1

Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q psy11461         33 AINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHE   94 (253)
Q Consensus        33 A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~   94 (253)
                      |+.+|.+|+.+.|.+...|+.+|.++...|+.-.|+-+|-+++....-.+.|..++...+..
T Consensus         1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            68899999999999999999999999999999999999999997765567788888777776

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=93.86  E-value=2.1  Score=35.81  Aligned_cols=80  Identities=16%  Similarity=0.127  Sum_probs=55.6

Q ss_pred             HHhccCHHHHHHHHHHHHHhC-CCC-------HHHHHHHHHHHHHhh-CHHHHHHHHHHHHhh----CC---C-------
Q psy11461         24 YFGLRQYEEAINCYTRAIIKN-PVI-------PSYFTNRALCYLKLK-QYVHCCDDCRKALEL----EP---S-------   80 (253)
Q Consensus        24 ~~~~g~~~~A~~~y~~ai~~~-p~~-------~~~~~~~a~~~~~~~-~~~~A~~~~~~al~l----~p---~-------   80 (253)
                      ..++|+++.|.-+|.++-... ..+       +..+++.|...+..+ +++.|..++++|+++    .+   .       
T Consensus         3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el   82 (278)
T PF08631_consen    3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL   82 (278)
T ss_pred             chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence            457788888888888886654 222       346777788888888 888888888888877    21   1       


Q ss_pred             cHHHHHHHHHHHHHhCCHHHHHH
Q psy11461         81 LVKAQFFLGQALHEINHYDEAVK  103 (253)
Q Consensus        81 ~~~a~~~lg~~~~~~~~~~~A~~  103 (253)
                      ....+..++.++...+.++...+
T Consensus        83 r~~iL~~La~~~l~~~~~~~~~k  105 (278)
T PF08631_consen   83 RLSILRLLANAYLEWDTYESVEK  105 (278)
T ss_pred             HHHHHHHHHHHHHcCCChHHHHH
Confidence            13456777888888777654333

It is also involved in sporulation [].

>KOG0530|consensus

Probab=93.78  E-value=3.3  Score=34.24  Aligned_cols=95  Identities=11%  Similarity=0.034  Sum_probs=78.6

Q ss_pred             HhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh-CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhCCHH-HHH
Q psy11461         25 FGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLK-QYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYD-EAV  102 (253)
Q Consensus        25 ~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~-~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~~~~~-~A~  102 (253)
                      .+...-..|+..-..+|.++|.+.+.|.-|-.|+..++ +..+-+.++..++.-+|.|...|..+-.+.-.+|++. .-+
T Consensus        54 ~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rEL  133 (318)
T KOG0530|consen   54 AKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFREL  133 (318)
T ss_pred             hccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchH
Confidence            34556688999999999999999999998888887766 5777888899999999999999999988888888887 778


Q ss_pred             HHHHHHHhhchhcccch
Q psy11461        103 KHLQRAYDLSREQNLNY  119 (253)
Q Consensus       103 ~~~~~al~l~p~~~~~~  119 (253)
                      +..+.++..+..+-.++
T Consensus       134 ef~~~~l~~DaKNYHaW  150 (318)
T KOG0530|consen  134 EFTKLMLDDDAKNYHAW  150 (318)
T ss_pred             HHHHHHHhccccchhhh
Confidence            88888888777664443

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=93.73  E-value=3.7  Score=35.18  Aligned_cols=107  Identities=9%  Similarity=-0.110  Sum_probs=79.6

Q ss_pred             CCCcccHHHHHHHHHHHHhcc------------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHH
Q psy11461          8 TTNNLSDKELKDEGNRYFGLR------------QYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKAL   75 (253)
Q Consensus         8 ~~~~~~a~~~~~~g~~~~~~g------------~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al   75 (253)
                      ..+|.+...|..+...--..-            -.+..+..|.+|++.+|.+..++..+-.+..+....+...+-+++++
T Consensus        13 ~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l   92 (321)
T PF08424_consen   13 RENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELL   92 (321)
T ss_pred             HhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            356777777777765442221            14566778999999999999999998888888889999999999999


Q ss_pred             hhCCCcHHHHHHHHHHH---HHhCCHHHHHHHHHHHHhhchh
Q psy11461         76 ELEPSLVKAQFFLGQAL---HEINHYDEAVKHLQRAYDLSRE  114 (253)
Q Consensus        76 ~l~p~~~~a~~~lg~~~---~~~~~~~~A~~~~~~al~l~p~  114 (253)
                      ..+|+++..|..+-...   +..-.++.....|.++++.-..
T Consensus        93 ~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~  134 (321)
T PF08424_consen   93 FKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSR  134 (321)
T ss_pred             HHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHH
Confidence            99999988775442222   2223577888888888876443

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=93.71  E-value=0.18  Score=28.47  Aligned_cols=29  Identities=21%  Similarity=0.291  Sum_probs=26.5

Q ss_pred             HHHHHHHHHHHHhhCHHHHHHHHHHHHhh
Q psy11461         49 SYFTNRALCYLKLKQYVHCCDDCRKALEL   77 (253)
Q Consensus        49 ~~~~~~a~~~~~~~~~~~A~~~~~~al~l   77 (253)
                      .+|..+|.+.+..++|+.|+.+|.+++.+
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i   30 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEI   30 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            47889999999999999999999999874

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=93.16  E-value=2.9  Score=34.94  Aligned_cols=97  Identities=22%  Similarity=0.190  Sum_probs=50.1

Q ss_pred             HHHHHHHHHHHHh----ccCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHhh-------CHHHHHHHHHHHHhhCCCc
Q psy11461         14 DKELKDEGNRYFG----LRQYEEAINCYTRAIIKNPVI-PSYFTNRALCYLKLK-------QYVHCCDDCRKALELEPSL   81 (253)
Q Consensus        14 a~~~~~~g~~~~~----~g~~~~A~~~y~~ai~~~p~~-~~~~~~~a~~~~~~~-------~~~~A~~~~~~al~l~p~~   81 (253)
                      +...+.+|..+..    ..++.+|...|.+|....... .....++|.+|..-.       +...|...+.++-...  +
T Consensus       109 ~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~  186 (292)
T COG0790         109 AEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--N  186 (292)
T ss_pred             HHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--C
Confidence            3345555555554    336666666666666553332 233555555554421       1224555555555543  5


Q ss_pred             HHHHHHHHHHHHH----hCCHHHHHHHHHHHHhhc
Q psy11461         82 VKAQFFLGQALHE----INHYDEAVKHLQRAYDLS  112 (253)
Q Consensus        82 ~~a~~~lg~~~~~----~~~~~~A~~~~~~al~l~  112 (253)
                      +.+.+.+|.+|..    ..++.+|...|.+|-+..
T Consensus       187 ~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g  221 (292)
T COG0790         187 PDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQG  221 (292)
T ss_pred             HHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC
Confidence            5566666655533    125566666666665554

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=93.15  E-value=0.75  Score=38.41  Aligned_cols=64  Identities=14%  Similarity=0.066  Sum_probs=59.3

Q ss_pred             HHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Q psy11461         48 PSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDL  111 (253)
Q Consensus        48 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l  111 (253)
                      ..++..++..+...++++.++..+++.+.++|-+-.+|..+-.+|...|+...|+..|++.-++
T Consensus       153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~  216 (280)
T COG3629         153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT  216 (280)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence            4567788999999999999999999999999999999999999999999999999999988775

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=93.06  E-value=0.14  Score=26.05  Aligned_cols=22  Identities=36%  Similarity=0.357  Sum_probs=12.2

Q ss_pred             HHHHHHHHHHHhCCHHHHHHHH
Q psy11461         84 AQFFLGQALHEINHYDEAVKHL  105 (253)
Q Consensus        84 a~~~lg~~~~~~~~~~~A~~~~  105 (253)
                      +.+.+|.++...|++++|...+
T Consensus         3 a~~~la~~~~~~G~~~eA~~~l   24 (26)
T PF07721_consen    3 ARLALARALLAQGDPDEAERLL   24 (26)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHH
Confidence            4455555555555555555544

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=92.99  E-value=0.41  Score=26.61  Aligned_cols=21  Identities=24%  Similarity=0.336  Sum_probs=10.6

Q ss_pred             HHHHHHHHHHHhCCHHHHHHH
Q psy11461         84 AQFFLGQALHEINHYDEAVKH  104 (253)
Q Consensus        84 a~~~lg~~~~~~~~~~~A~~~  104 (253)
                      .++.+|..+...|++++|+..
T Consensus         3 ~~y~~a~~~y~~~ky~~A~~~   23 (36)
T PF07720_consen    3 YLYGLAYNFYQKGKYDEAIHF   23 (36)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHH
T ss_pred             HHHHHHHHHHHHhhHHHHHHH
Confidence            344455555555555555555

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>KOG0530|consensus

Probab=92.93  E-value=2.6  Score=34.88  Aligned_cols=107  Identities=11%  Similarity=0.026  Sum_probs=89.4

Q ss_pred             CcccHHHHHHHHHHHHhc-cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHH-HHHHHHHHHHhhCCCcHHHHHH
Q psy11461         10 NNLSDKELKDEGNRYFGL-RQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYV-HCCDDCRKALELEPSLVKAQFF   87 (253)
Q Consensus        10 ~~~~a~~~~~~g~~~~~~-g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~-~A~~~~~~al~l~p~~~~a~~~   87 (253)
                      +|.+-..|.-.-.++-.. .+..+-.++++..+..+|.|..+|..|-.+....|++. .-+..++.++..+..|..+|..
T Consensus        73 NpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWsh  152 (318)
T KOG0530|consen   73 NPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSH  152 (318)
T ss_pred             CcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHH
Confidence            344455555555555443 35677788899999999999999999999999999888 8889999999999999999999


Q ss_pred             HHHHHHHhCCHHHHHHHHHHHHhhchhcc
Q psy11461         88 LGQALHEINHYDEAVKHLQRAYDLSREQN  116 (253)
Q Consensus        88 lg~~~~~~~~~~~A~~~~~~al~l~p~~~  116 (253)
                      +-.+....+.++.-+.+....++.+--+.
T Consensus       153 RqW~~r~F~~~~~EL~y~~~Lle~Di~NN  181 (318)
T KOG0530|consen  153 RQWVLRFFKDYEDELAYADELLEEDIRNN  181 (318)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHhhhcc
Confidence            99999999999999999999999876553

>KOG3807|consensus

Probab=92.92  E-value=5.5  Score=34.19  Aligned_cols=94  Identities=15%  Similarity=0.032  Sum_probs=70.9

Q ss_pred             HHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhC-------------------
Q psy11461         18 KDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELE-------------------   78 (253)
Q Consensus        18 ~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~-------------------   78 (253)
                      +..-...++..+..+-|..-..|+.++|..+.+|..+|.--  ..-..+|.+.+++|++..                   
T Consensus       188 ~eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEE--a~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~da  265 (556)
T KOG3807|consen  188 DEIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEEE--ATTIVDAERLFKQALKAGETIYRQSQQCQHQSPQHEA  265 (556)
T ss_pred             HHHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhh--hhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhccchhh
Confidence            44556677888889999999999999999999999887543  233566777777766531                   


Q ss_pred             ----CCcH--HHHHHHHHHHHHhCCHHHHHHHHHHHHhhch
Q psy11461         79 ----PSLV--KAQFFLGQALHEINHYDEAVKHLQRAYDLSR  113 (253)
Q Consensus        79 ----p~~~--~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p  113 (253)
                          ..|+  ..-.+++.|..++|+..+|++.++...+--|
T Consensus       266 ~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~p  306 (556)
T KOG3807|consen  266 QLRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFP  306 (556)
T ss_pred             hhhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcc
Confidence                1122  2346789999999999999999998887666

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=92.83  E-value=3.3  Score=35.48  Aligned_cols=85  Identities=9%  Similarity=-0.071  Sum_probs=70.3

Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHhhC------------HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhCCHHHH
Q psy11461         34 INCYTRAIIKNPVIPSYFTNRALCYLKLKQ------------YVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEA  101 (253)
Q Consensus        34 ~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~------------~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~~~~~~A  101 (253)
                      ...|.+.+..+|.+..+|..+....-..-.            .+.-+..+++|++.+|++...+..+-.+.....+.++.
T Consensus         5 ~~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l   84 (321)
T PF08424_consen    5 TAELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKL   84 (321)
T ss_pred             HHHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHH
Confidence            345788899999999999988766554432            45678889999999999999988888888888899999


Q ss_pred             HHHHHHHHhhchhcccc
Q psy11461        102 VKHLQRAYDLSREQNLN  118 (253)
Q Consensus       102 ~~~~~~al~l~p~~~~~  118 (253)
                      .+.+++++..+|++..-
T Consensus        85 ~~~we~~l~~~~~~~~L  101 (321)
T PF08424_consen   85 AKKWEELLFKNPGSPEL  101 (321)
T ss_pred             HHHHHHHHHHCCCChHH
Confidence            99999999999987543

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=92.64  E-value=0.59  Score=39.07  Aligned_cols=60  Identities=22%  Similarity=0.187  Sum_probs=51.7

Q ss_pred             HHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q psy11461         50 YFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAY  109 (253)
Q Consensus        50 ~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al  109 (253)
                      ++...|..|...|.+.+|++.+++++.++|-+...+..+-.++..+|+--.+++.|.+.-
T Consensus       281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya  340 (361)
T COG3947         281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA  340 (361)
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence            445568889999999999999999999999999999999999999999888877776543

>KOG0686|consensus

Probab=92.61  E-value=0.95  Score=39.53  Aligned_cols=97  Identities=23%  Similarity=0.233  Sum_probs=75.2

Q ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhC----C----CcH
Q psy11461         14 DKELKDEGNRYFGLRQYEEAINCYTRAIIKNPV---IPSYFTNRALCYLKLKQYVHCCDDCRKALELE----P----SLV   82 (253)
Q Consensus        14 a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~----p----~~~   82 (253)
                      =.++-.+|..|...|+++.|+++|.++-....+   ....+.|.-.+-..+|+|........+|...-    .    -..
T Consensus       150 Rra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~  229 (466)
T KOG0686|consen  150 RRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPA  229 (466)
T ss_pred             HHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCc
Confidence            346788999999999999999999996555433   23467788888888999999988888887651    0    123


Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q psy11461         83 KAQFFLGQALHEINHYDEAVKHLQRAYD  110 (253)
Q Consensus        83 ~a~~~lg~~~~~~~~~~~A~~~~~~al~  110 (253)
                      +.....|.+.+.+++|..|.++|..+-.
T Consensus       230 kl~C~agLa~L~lkkyk~aa~~fL~~~~  257 (466)
T KOG0686|consen  230 KLKCAAGLANLLLKKYKSAAKYFLLAEF  257 (466)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            4566678899999999999999887643

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=92.59  E-value=0.18  Score=25.68  Aligned_cols=23  Identities=13%  Similarity=-0.227  Sum_probs=13.3

Q ss_pred             HHHHHHHHHHHhhCHHHHHHHHH
Q psy11461         50 YFTNRALCYLKLKQYVHCCDDCR   72 (253)
Q Consensus        50 ~~~~~a~~~~~~~~~~~A~~~~~   72 (253)
                      +..++|.++..+|++++|...++
T Consensus         3 a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    3 ARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHh
Confidence            45556666666666666655543

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=92.50  E-value=3.5  Score=34.49  Aligned_cols=100  Identities=17%  Similarity=0.088  Sum_probs=73.0

Q ss_pred             cHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHh----CC---C-------CHHHHHHHHHHHHHhhCHHH---HHHHHHHH
Q psy11461         13 SDKELKDEGNRYFGLR-QYEEAINCYTRAIIK----NP---V-------IPSYFTNRALCYLKLKQYVH---CCDDCRKA   74 (253)
Q Consensus        13 ~a~~~~~~g~~~~~~g-~~~~A~~~y~~ai~~----~p---~-------~~~~~~~~a~~~~~~~~~~~---A~~~~~~a   74 (253)
                      -+..+++.|...+..+ ++..|+..+++|...    .+   .       ....+..++.+|+..+.++.   |....+.+
T Consensus        34 La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l  113 (278)
T PF08631_consen   34 LARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLL  113 (278)
T ss_pred             HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence            4668899999999999 999999999999887    21   1       12357778999988887654   34444444


Q ss_pred             HhhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhc
Q psy11461         75 LELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLS  112 (253)
Q Consensus        75 l~l~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~  112 (253)
                      -.-.|+.+..++..-.++...++.+++.+.+.+.+..-
T Consensus       114 ~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~  151 (278)
T PF08631_consen  114 ESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV  151 (278)
T ss_pred             HHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc
Confidence            44567766666555455555788999999999888754

It is also involved in sporulation [].

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=92.25  E-value=2.1  Score=28.46  Aligned_cols=62  Identities=19%  Similarity=0.140  Sum_probs=47.6

Q ss_pred             HHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHH---HHHHHHHhCCHHHHHHHHHHHHhhc
Q psy11461         51 FTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFF---LGQALHEINHYDEAVKHLQRAYDLS  112 (253)
Q Consensus        51 ~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~---lg~~~~~~~~~~~A~~~~~~al~l~  112 (253)
                      ....|.-++..++..+|+..++++++..++....+..   +..+|...|+|.+.+++..+=+.+.
T Consensus         9 ~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A   73 (80)
T PF10579_consen    9 QIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIA   73 (80)
T ss_pred             HHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455666778889999999999999988887665554   4566888899999888766655543

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>KOG2581|consensus

Probab=92.13  E-value=3.5  Score=36.16  Aligned_cols=102  Identities=12%  Similarity=0.018  Sum_probs=74.2

Q ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHHh-----CC-CCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhh--CC--CcHH
Q psy11461         14 DKELKDEGNRYFGLRQYEEAINCYTRAIIK-----NP-VIPSYFTNRALCYLKLKQYVHCCDDCRKALEL--EP--SLVK   83 (253)
Q Consensus        14 a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~-----~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l--~p--~~~~   83 (253)
                      +..|+-+...+-..|+...-...+...+..     +. .-+.+.+.+-.+|+..+.|+.|-....++.--  +.  ...+
T Consensus       169 ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~AR  248 (493)
T KOG2581|consen  169 AKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWAR  248 (493)
T ss_pred             HHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHH
Confidence            455666666677777765555555444433     11 23456777788999999999999888887632  12  2346


Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461         84 AQFFLGQALHEINHYDEAVKHLQRAYDLSREQ  115 (253)
Q Consensus        84 a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~  115 (253)
                      .+|++|.+..-+++|..|.++|..|++..|..
T Consensus       249 Y~yY~GrIkaiqldYssA~~~~~qa~rkapq~  280 (493)
T KOG2581|consen  249 YLYYLGRIKAIQLDYSSALEYFLQALRKAPQH  280 (493)
T ss_pred             HHHHHhhHHHhhcchhHHHHHHHHHHHhCcch
Confidence            68889999999999999999999999999973

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=92.12  E-value=2.3  Score=34.20  Aligned_cols=70  Identities=13%  Similarity=0.044  Sum_probs=51.7

Q ss_pred             ccHHHHHHHHHHHHhccCHH-------HHHHHHHHHHHhC--CC----CHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhC
Q psy11461         12 LSDKELKDEGNRYFGLRQYE-------EAINCYTRAIIKN--PV----IPSYFTNRALCYLKLKQYVHCCDDCRKALELE   78 (253)
Q Consensus        12 ~~a~~~~~~g~~~~~~g~~~-------~A~~~y~~ai~~~--p~----~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~   78 (253)
                      ..|..+..+|-.|...|+-+       .|.+.|.+++...  |.    ...+.+.+|..+.+.|++++|.+++.+++...
T Consensus       116 ~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~  195 (214)
T PF09986_consen  116 KKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK  195 (214)
T ss_pred             HHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence            45677777888888788744       4555555555443  22    35688899999999999999999999999864


Q ss_pred             CCc
Q psy11461         79 PSL   81 (253)
Q Consensus        79 p~~   81 (253)
                      ..+
T Consensus       196 ~~s  198 (214)
T PF09986_consen  196 KAS  198 (214)
T ss_pred             CCC
Confidence            433

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=91.76  E-value=1.4  Score=36.84  Aligned_cols=64  Identities=14%  Similarity=0.085  Sum_probs=58.6

Q ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhh
Q psy11461         14 DKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALEL   77 (253)
Q Consensus        14 a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l   77 (253)
                      ..++..++..+...|+++.++..+++.+..+|.+-..|..+-..|++.|+...|+..|++.-.+
T Consensus       153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~  216 (280)
T COG3629         153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT  216 (280)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence            3466778899999999999999999999999999999999999999999999999999887664

>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A

Probab=91.75  E-value=1.1  Score=33.49  Aligned_cols=46  Identities=11%  Similarity=0.077  Sum_probs=22.1

Q ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Q psy11461         17 LKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLK   62 (253)
Q Consensus        17 ~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~   62 (253)
                      ....+...+..|+|.-|..+...++..+|++..+...++.++.+++
T Consensus        73 vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg  118 (141)
T PF14863_consen   73 VLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLG  118 (141)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence            3444455555555555555555555555555555555555554443

>KOG1550|consensus

Probab=91.72  E-value=2.6  Score=39.04  Aligned_cols=94  Identities=17%  Similarity=0.116  Sum_probs=76.2

Q ss_pred             HHHHHHHHHHhcc-----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh---CHHHHHHHHHHHHhhCCCcHHHHHH
Q psy11461         16 ELKDEGNRYFGLR-----QYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLK---QYVHCCDDCRKALELEPSLVKAQFF   87 (253)
Q Consensus        16 ~~~~~g~~~~~~g-----~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~---~~~~A~~~~~~al~l~p~~~~a~~~   87 (253)
                      +...+|..|.+..     ++..|..+|.++...  .++.+.+.+|.|+..-.   ++..|..+|..|..  -.++.++++
T Consensus       290 a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~--g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~--~G~~~A~~~  365 (552)
T KOG1550|consen  290 AQYGLGRLYLQGLGVEKIDYEKALKLYTKAAEL--GNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAK--AGHILAIYR  365 (552)
T ss_pred             cccHHHHHHhcCCCCccccHHHHHHHHHHHHhc--CCchHHHHHHHHHHcCCccccHHHHHHHHHHHHH--cCChHHHHH
Confidence            4567888888743     788899999999887  45667888899988765   57899999998876  367899999


Q ss_pred             HHHHHHHh----CCHHHHHHHHHHHHhhch
Q psy11461         88 LGQALHEI----NHYDEAVKHLQRAYDLSR  113 (253)
Q Consensus        88 lg~~~~~~----~~~~~A~~~~~~al~l~p  113 (253)
                      +|.|+..=    .+...|..++.++-+.++
T Consensus       366 la~~y~~G~gv~r~~~~A~~~~k~aA~~g~  395 (552)
T KOG1550|consen  366 LALCYELGLGVERNLELAFAYYKKAAEKGN  395 (552)
T ss_pred             HHHHHHhCCCcCCCHHHHHHHHHHHHHccC
Confidence            99998653    378999999999999883

>KOG1839|consensus

Probab=91.70  E-value=3.5  Score=41.19  Aligned_cols=106  Identities=20%  Similarity=0.180  Sum_probs=85.7

Q ss_pred             CCCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhh--
Q psy11461          8 TTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIK--------NPVIPSYFTNRALCYLKLKQYVHCCDDCRKALEL--   77 (253)
Q Consensus         8 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l--   77 (253)
                      ..+|..+..+..++..+.+.|++++|+..-.++.-+        .|+....|.+++...+..++...|...+.++..+  
T Consensus       967 ~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~ 1046 (1236)
T KOG1839|consen  967 VLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKL 1046 (1236)
T ss_pred             hcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhc
Confidence            356778888899999999999999999987777644        3456678999999999988888899988888776  


Q ss_pred             ------CCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhch
Q psy11461         78 ------EPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSR  113 (253)
Q Consensus        78 ------~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p  113 (253)
                            .|.-.....+++..+..+++++.|+.++..|+...-
T Consensus      1047 Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~ 1088 (1236)
T KOG1839|consen 1047 LSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNK 1088 (1236)
T ss_pred             cccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHh
Confidence                  355555667888888888999999999999988543

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=91.61  E-value=1  Score=32.52  Aligned_cols=65  Identities=18%  Similarity=0.131  Sum_probs=51.2

Q ss_pred             cHHHHHHHHHHHHhccCHHHHHHHHHHHHHh-------CCCC----HHHHHHHHHHHHHhhCHHHHHHHHHHHHhh
Q psy11461         13 SDKELKDEGNRYFGLRQYEEAINCYTRAIIK-------NPVI----PSYFTNRALCYLKLKQYVHCCDDCRKALEL   77 (253)
Q Consensus        13 ~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~-------~p~~----~~~~~~~a~~~~~~~~~~~A~~~~~~al~l   77 (253)
                      ++..+-.++..+...|+|++++..-..++..       +.+.    ..+.+++|.++-.+|+.++|+..|+.+.+.
T Consensus        54 DA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM  129 (144)
T PF12968_consen   54 DAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM  129 (144)
T ss_dssp             HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence            4556667888999999999999998888865       3333    346788999999999999999999998764

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=91.56  E-value=4.4  Score=35.49  Aligned_cols=97  Identities=18%  Similarity=0.074  Sum_probs=76.1

Q ss_pred             ccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH--HHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q psy11461         12 LSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALC--YLKLKQYVHCCDDCRKALELEPSLVKAQFFLG   89 (253)
Q Consensus        12 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~--~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg   89 (253)
                      ..+......+....-.|+|+.|...|...+. +|.. ...-.+|..  -..+|..+.|+.+..++-...|.-..++...-
T Consensus       118 qepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEt-RllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtL  195 (531)
T COG3898         118 QEPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPET-RLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATL  195 (531)
T ss_pred             chHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHH-HHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHH
Confidence            3456677778888999999999999987664 4542 233333333  33588999999999999999999999988888


Q ss_pred             HHHHHhCCHHHHHHHHHHHHh
Q psy11461         90 QALHEINHYDEAVKHLQRAYD  110 (253)
Q Consensus        90 ~~~~~~~~~~~A~~~~~~al~  110 (253)
                      ...+..|+|+.|++.+.....
T Consensus       196 e~r~~~gdWd~AlkLvd~~~~  216 (531)
T COG3898         196 EARCAAGDWDGALKLVDAQRA  216 (531)
T ss_pred             HHHHhcCChHHHHHHHHHHHH
Confidence            889999999999998876544

>KOG3617|consensus

Probab=91.55  E-value=10  Score=36.62  Aligned_cols=64  Identities=13%  Similarity=-0.005  Sum_probs=51.0

Q ss_pred             cHHHHHHHHHHHHhccCHHHHHHHHHHHHHh---------------------CCCCHHHHHHHHHHHHHhhCHHHHHHHH
Q psy11461         13 SDKELKDEGNRYFGLRQYEEAINCYTRAIIK---------------------NPVIPSYFTNRALCYLKLKQYVHCCDDC   71 (253)
Q Consensus        13 ~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~---------------------~p~~~~~~~~~a~~~~~~~~~~~A~~~~   71 (253)
                      +...|...|..+-..|+.+.|+.+|..|-..                     ...+-.+.+.+|..|-..|++.+|+..|
T Consensus       911 d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~Ff  990 (1416)
T KOG3617|consen  911 DESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFF  990 (1416)
T ss_pred             chHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHH
Confidence            4466777888888999999999999888543                     2345567888999999999999999988


Q ss_pred             HHHHh
Q psy11461         72 RKALE   76 (253)
Q Consensus        72 ~~al~   76 (253)
                      .+|-.
T Consensus       991 TrAqa  995 (1416)
T KOG3617|consen  991 TRAQA  995 (1416)
T ss_pred             HHHHH
Confidence            77643

>KOG2047|consensus

Probab=91.30  E-value=13  Score=34.86  Aligned_cols=100  Identities=11%  Similarity=0.080  Sum_probs=68.3

Q ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCC----------
Q psy11461         14 DKELKDEGNRYFGLRQYEEAINCYTRAIIKNPV----IPSYFTNRALCYLKLKQYVHCCDDCRKALELEP----------   79 (253)
Q Consensus        14 a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~----~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p----------   79 (253)
                      ...|...|..|...|+.+.|...+++|+...-.    -...|++-|..-+...+++.|.+..++|...-.          
T Consensus       387 ~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~  466 (835)
T KOG2047|consen  387 GTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNS  466 (835)
T ss_pred             hhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCC
Confidence            446777788888888888888888888776422    245677777777777788888888777766521          


Q ss_pred             --------CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhch
Q psy11461         80 --------SLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSR  113 (253)
Q Consensus        80 --------~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p  113 (253)
                              ++.+.|..++...-..|-++.....|.+.+.+.-
T Consensus       467 ~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLri  508 (835)
T KOG2047|consen  467 EPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRI  508 (835)
T ss_pred             CcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhc
Confidence                    1234556666666666777777777777777643

>KOG2422|consensus

Probab=91.24  E-value=9.1  Score=35.20  Aligned_cols=111  Identities=18%  Similarity=0.115  Sum_probs=69.8

Q ss_pred             ccCHHHHHHHHHHHHHh------------CCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhh-----C-----------
Q psy11461         27 LRQYEEAINCYTRAIIK------------NPVIPSYFTNRALCYLKLKQYVHCCDDCRKALEL-----E-----------   78 (253)
Q Consensus        27 ~g~~~~A~~~y~~ai~~------------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l-----~-----------   78 (253)
                      ...|++|...|.-++..            .|-+...+..+|.++..+|+.+-|.....++|-.     .           
T Consensus       251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR  330 (665)
T KOG2422|consen  251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR  330 (665)
T ss_pred             chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence            44566666666666554            3445566777777777788777777766666532     1           


Q ss_pred             -----CCcH---HHHHHHHHHHHHhCCHHHHHHHHHHHHhhchh-cccchHHHHHHHHHHHHHHHHHH
Q psy11461         79 -----PSLV---KAQFFLGQALHEINHYDEAVKHLQRAYDLSRE-QNLNYGDDIACQLRIAKKKRWAE  137 (253)
Q Consensus        79 -----p~~~---~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~-~~~~~~~~~~~~~~~~~~~~~~~  137 (253)
                           |.|-   .++++.-+.+...|.+..|.+.++-.+.++|. ++....--|.-+..+++.-.|..
T Consensus       331 L~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI  398 (665)
T KOG2422|consen  331 LPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWII  398 (665)
T ss_pred             CcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHH
Confidence                 2222   23444455666678888888888888888887 66655555555555555555543

>KOG2042|consensus

Probab=91.17  E-value=0.19  Score=48.28  Aligned_cols=34  Identities=26%  Similarity=0.442  Sum_probs=31.8

Q ss_pred             cCCCCCCCCCCCCCCCCcCcHHHHHHHHHHhhhc
Q psy11461        214 VGHFDPVTRVKLSADQLIPNFAMKEVVDNFLQEN  247 (253)
Q Consensus       214 ~g~~DP~tr~~l~~~~l~pN~~lk~a~~~~l~~n  247 (253)
                      ++.+||+-|+||+.+++.||..||+-|+.|+.+.
T Consensus       904 s~~tdPFNR~pLt~d~v~pn~eLK~kI~~~~~ek  937 (943)
T KOG2042|consen  904 SDCTDPFNREPLTEDMVSPNEELKAKIRCWIKEK  937 (943)
T ss_pred             cCCCCccccccCchhhcCCCHHHHHHHHHHHHHh
Confidence            7789999999999999999999999999999764

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=90.98  E-value=5.5  Score=35.92  Aligned_cols=98  Identities=11%  Similarity=0.074  Sum_probs=69.2

Q ss_pred             HHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHH-------------
Q psy11461         18 KDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKA-------------   84 (253)
Q Consensus        18 ~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a-------------   84 (253)
                      ..--...+..|+...|......++...|..|.....++.++..+|.|+.+..+..-+-.+-....++             
T Consensus       293 ~~si~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r  372 (831)
T PRK15180        293 TLSITKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLAR  372 (831)
T ss_pred             HHHHHHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhh
Confidence            3344456778999999999999999999999999999999999999999888775543332111111             


Q ss_pred             ---------------------HHHHHHHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461         85 ---------------------QFFLGQALHEINHYDEAVKHLQRAYDLSREQ  115 (253)
Q Consensus        85 ---------------------~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~  115 (253)
                                           ...-+.....+|-++++.-.+++.+.++|..
T Consensus       373 ~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~  424 (831)
T PRK15180        373 WREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPET  424 (831)
T ss_pred             HHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChh
Confidence                                 1111223344566788888999999998863

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=90.85  E-value=0.97  Score=40.47  Aligned_cols=59  Identities=14%  Similarity=0.045  Sum_probs=34.5

Q ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHH
Q psy11461         17 LKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKAL   75 (253)
Q Consensus        17 ~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al   75 (253)
                      ....+.+.-..|+|+.+.....-+-..-.........+-....++++|++|.....-.+
T Consensus       326 i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l  384 (831)
T PRK15180        326 IQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMML  384 (831)
T ss_pred             hHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHh
Confidence            34456667777888888777655544333333344445555566666666666554443

>KOG1550|consensus

Probab=90.70  E-value=2.8  Score=38.82  Aligned_cols=99  Identities=21%  Similarity=0.179  Sum_probs=75.6

Q ss_pred             cHHHHHHHHHHHHh-----ccCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHhh-----CHHHHHHHHHHHHhh
Q psy11461         13 SDKELKDEGNRYFG-----LRQYEEAINCYTRAIIK-----NPVIPSYFTNRALCYLKLK-----QYVHCCDDCRKALEL   77 (253)
Q Consensus        13 ~a~~~~~~g~~~~~-----~g~~~~A~~~y~~ai~~-----~p~~~~~~~~~a~~~~~~~-----~~~~A~~~~~~al~l   77 (253)
                      .+.+...+|.+++.     .++.+.|+.+|..+...     .-.++.+.+.+|.+|.+..     ++..|...+.++-.+
T Consensus       243 ~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~  322 (552)
T KOG1550|consen  243 HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAEL  322 (552)
T ss_pred             chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhc
Confidence            34455566776654     37899999999999771     1125668889999999843     678899999999886


Q ss_pred             CCCcHHHHHHHHHHHHHhC---CHHHHHHHHHHHHhhch
Q psy11461         78 EPSLVKAQFFLGQALHEIN---HYDEAVKHLQRAYDLSR  113 (253)
Q Consensus        78 ~p~~~~a~~~lg~~~~~~~---~~~~A~~~~~~al~l~p  113 (253)
                        .++.+.+.+|.++..-.   ++..|..+|..|...+-
T Consensus       323 --g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~  359 (552)
T KOG1550|consen  323 --GNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGH  359 (552)
T ss_pred             --CCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCC
Confidence              46789999999987765   67899999999886643

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=90.55  E-value=3.4  Score=31.05  Aligned_cols=55  Identities=15%  Similarity=-0.010  Sum_probs=46.7

Q ss_pred             cccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHH
Q psy11461         11 NLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYV   65 (253)
Q Consensus        11 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~   65 (253)
                      |..+..-.--|..++..|+|.+|+..+.......+..+..--.+|.|+.-+|+.+
T Consensus        41 P~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp~   95 (153)
T TIGR02561        41 PNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDAE   95 (153)
T ss_pred             CCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCChH
Confidence            4455555668999999999999999999999988888888899999999888743

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=90.54  E-value=4.8  Score=28.64  Aligned_cols=62  Identities=13%  Similarity=0.133  Sum_probs=50.0

Q ss_pred             HHHHHHHhhCHHHHHHHHHHHHhhCCCcHH---HHHHHHHHHHHhCC-----------HHHHHHHHHHHHhhchhc
Q psy11461         54 RALCYLKLKQYVHCCDDCRKALELEPSLVK---AQFFLGQALHEINH-----------YDEAVKHLQRAYDLSREQ  115 (253)
Q Consensus        54 ~a~~~~~~~~~~~A~~~~~~al~l~p~~~~---a~~~lg~~~~~~~~-----------~~~A~~~~~~al~l~p~~  115 (253)
                      +|.-++..|++-+|++..+..+..++++..   .+..-|.++..+..           .-.++++|.++..+.|..
T Consensus         2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~   77 (111)
T PF04781_consen    2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDS   77 (111)
T ss_pred             hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhH
Confidence            577889999999999999999999888764   45556777766642           355789999999999886

>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=90.37  E-value=2.3  Score=27.99  Aligned_cols=31  Identities=19%  Similarity=0.125  Sum_probs=23.6

Q ss_pred             cHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Q psy11461         13 SDKELKDEGNRYFGLRQYEEAINCYTRAIIK   43 (253)
Q Consensus        13 ~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~   43 (253)
                      .+..+...|..+=+.|++.+|+.+|+++|..
T Consensus         5 ~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~   35 (75)
T cd02682           5 MARKYAINAVKAEKEGNAEDAITNYKKAIEV   35 (75)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence            4566777778888888888888888877654

This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=89.96  E-value=10  Score=31.58  Aligned_cols=94  Identities=20%  Similarity=0.151  Sum_probs=68.6

Q ss_pred             HHHHHHHHHHhc-----c--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hhCHHHHHHHHHHHHhhCCCcHHH
Q psy11461         16 ELKDEGNRYFGL-----R--QYEEAINCYTRAIIKNPVIPSYFTNRALCYLK----LKQYVHCCDDCRKALELEPSLVKA   84 (253)
Q Consensus        16 ~~~~~g~~~~~~-----g--~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~l~p~~~~a   84 (253)
                      ....+|..+..-     -  +...|+..|.++-...  ++.+..++|.+|..    ..++.+|..+|.+|-....  ..+
T Consensus       150 ~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a  225 (292)
T COG0790         150 AMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAA  225 (292)
T ss_pred             HHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHH
Confidence            356666666554     1  3347999999988775  78899999988866    3489999999999999876  889


Q ss_pred             HHHHHHHHHHhC---------------CHHHHHHHHHHHHhhchh
Q psy11461         85 QFFLGQALHEIN---------------HYDEAVKHLQRAYDLSRE  114 (253)
Q Consensus        85 ~~~lg~~~~~~~---------------~~~~A~~~~~~al~l~p~  114 (253)
                      ++.++ ++...|               +...|...+.++....+.
T Consensus       226 ~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  269 (292)
T COG0790         226 CYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFD  269 (292)
T ss_pred             HHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCCh
Confidence            99999 777666               555555555555544433

>KOG0529|consensus

Probab=89.89  E-value=3  Score=36.58  Aligned_cols=90  Identities=16%  Similarity=0.155  Sum_probs=71.9

Q ss_pred             cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh--CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHh----CCHHHH
Q psy11461         28 RQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLK--QYVHCCDDCRKALELEPSLVKAQFFLGQALHEI----NHYDEA  101 (253)
Q Consensus        28 g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~--~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~----~~~~~A  101 (253)
                      .-+++-+.+...++..+|++..+|..|..++.+.+  +|..-++.|.++++.||.|..+|.++-.+.-..    ....+-
T Consensus        89 ~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~E  168 (421)
T KOG0529|consen   89 ALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEE  168 (421)
T ss_pred             HhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhH
Confidence            35677788889999999999999999999998776  478889999999999999998876665444333    235677


Q ss_pred             HHHHHHHHhhchhccc
Q psy11461        102 VKHLQRAYDLSREQNL  117 (253)
Q Consensus       102 ~~~~~~al~l~p~~~~  117 (253)
                      +++..+++.-+++|..
T Consensus       169 l~ftt~~I~~nfSNYs  184 (421)
T KOG0529|consen  169 LEFTTKLINDNFSNYS  184 (421)
T ss_pred             HHHHHHHHhccchhhh
Confidence            7888888887777643

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=89.76  E-value=0.87  Score=37.68  Aligned_cols=45  Identities=22%  Similarity=0.041  Sum_probs=40.5

Q ss_pred             HHHHHHHHHhhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Q psy11461         67 CCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDL  111 (253)
Q Consensus        67 A~~~~~~al~l~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l  111 (253)
                      |..+|.+|+.+.|.+...|..+|.++...|+.-.|+=+|-+++-.
T Consensus         1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~   45 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAV   45 (278)
T ss_dssp             HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSS
T ss_pred             CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhc
Confidence            678999999999999999999999999999999999999999855

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=89.34  E-value=9.3  Score=30.20  Aligned_cols=59  Identities=17%  Similarity=0.103  Sum_probs=47.0

Q ss_pred             HHHHHHHHHHhhCHHHHHHHHHHHHhhCCC-cHH--HHHHHHHHHHHhCCHHHHHHHHHHHH
Q psy11461         51 FTNRALCYLKLKQYVHCCDDCRKALELEPS-LVK--AQFFLGQALHEINHYDEAVKHLQRAY  109 (253)
Q Consensus        51 ~~~~a~~~~~~~~~~~A~~~~~~al~l~p~-~~~--a~~~lg~~~~~~~~~~~A~~~~~~al  109 (253)
                      -..+|..+...+++++|+..++.++....+ +.+  +-.++|.+...+|.+++|+..+....
T Consensus        92 aL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~  153 (207)
T COG2976          92 ALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIK  153 (207)
T ss_pred             HHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc
Confidence            445788889999999999999999965333 333  45788999999999999998876543

>KOG2422|consensus

Probab=89.29  E-value=6.8  Score=35.96  Aligned_cols=78  Identities=13%  Similarity=0.114  Sum_probs=57.9

Q ss_pred             CCCCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHh---------------------CCCCHHHHHH---HHHHHHHhh
Q psy11461          7 FTTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIK---------------------NPVIPSYFTN---RALCYLKLK   62 (253)
Q Consensus         7 ~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~---------------------~p~~~~~~~~---~a~~~~~~~   62 (253)
                      ...+|-....+..++.++..+|+.+-|.+...+++=.                     +|.|-.+|..   .-..+.+.|
T Consensus       277 L~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RG  356 (665)
T KOG2422|consen  277 LISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRG  356 (665)
T ss_pred             eccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcC
Confidence            4466888889999999999999999999998888733                     2333333322   233445688


Q ss_pred             CHHHHHHHHHHHHhhCCC-cHHH
Q psy11461         63 QYVHCCDDCRKALELEPS-LVKA   84 (253)
Q Consensus        63 ~~~~A~~~~~~al~l~p~-~~~a   84 (253)
                      -|.-|..+|+-.++++|. ++-+
T Consensus       357 C~rTA~E~cKlllsLdp~eDPl~  379 (665)
T KOG2422|consen  357 CWRTALEWCKLLLSLDPSEDPLG  379 (665)
T ss_pred             ChHHHHHHHHHHhhcCCcCCchh
Confidence            899999999999999997 5433

>KOG2300|consensus

Probab=89.07  E-value=17  Score=32.89  Aligned_cols=93  Identities=20%  Similarity=0.141  Sum_probs=49.6

Q ss_pred             ccHHHHHHHHHHHHh-ccCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHhh-CHHHHHHHHHHHHhhCCCcH
Q psy11461         12 LSDKELKDEGNRYFG-LRQYEEAINCYTRAIIKNPVIP-------SYFTNRALCYLKLK-QYVHCCDDCRKALELEPSLV   82 (253)
Q Consensus        12 ~~a~~~~~~g~~~~~-~g~~~~A~~~y~~ai~~~p~~~-------~~~~~~a~~~~~~~-~~~~A~~~~~~al~l~p~~~   82 (253)
                      -.+.....+|..++. ..+++.|..++++|..+-..-+       .++..++.+|.... .+..+...+++++++...++
T Consensus        44 veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p  123 (629)
T KOG2300|consen   44 VEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVP  123 (629)
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCc
Confidence            344555555555543 4555666666666554422211       23455566665555 55566666666666654433


Q ss_pred             ----HHHHHHHHHHHHhCCHHHHHHH
Q psy11461         83 ----KAQFFLGQALHEINHYDEAVKH  104 (253)
Q Consensus        83 ----~a~~~lg~~~~~~~~~~~A~~~  104 (253)
                          +.++.+++.+.-..++..|++.
T Consensus       124 ~wsckllfQLaql~~idkD~~sA~el  149 (629)
T KOG2300|consen  124 YWSCKLLFQLAQLHIIDKDFPSALEL  149 (629)
T ss_pred             hhhHHHHHHHHHHHhhhccchhHHHH
Confidence                3345555555555666665554

>KOG1914|consensus

Probab=89.05  E-value=3  Score=37.91  Aligned_cols=104  Identities=11%  Similarity=0.011  Sum_probs=78.3

Q ss_pred             CCCCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHH
Q psy11461          7 FTTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQF   86 (253)
Q Consensus         7 ~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~   86 (253)
                      +.++|.+..+|+.+-..+-.+ .+++..+.|.+.+...|..+.+|.......+..++|+...+.|.+++.-- -+...|.
T Consensus        13 ie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv-LnlDLW~   90 (656)
T KOG1914|consen   13 IEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV-LNLDLWK   90 (656)
T ss_pred             HhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-hhHhHHH
Confidence            457889999999998888777 99999999999999999999999999999999999999999999988632 2234432


Q ss_pred             -HHHHHHHHhCCHHHHHHHHHHHHhhc
Q psy11461         87 -FLGQALHEINHYDEAVKHLQRAYDLS  112 (253)
Q Consensus        87 -~lg~~~~~~~~~~~A~~~~~~al~l~  112 (253)
                       .+..+-.-.|+...+.....+|..+.
T Consensus        91 lYl~YVR~~~~~~~~~r~~m~qAy~f~  117 (656)
T KOG1914|consen   91 LYLSYVRETKGKLFGYREKMVQAYDFA  117 (656)
T ss_pred             HHHHHHHHHccCcchHHHHHHHHHHHH
Confidence             23334444455555555555555543

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=88.83  E-value=4.2  Score=36.54  Aligned_cols=83  Identities=20%  Similarity=0.148  Sum_probs=39.6

Q ss_pred             cHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q psy11461         13 SDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQAL   92 (253)
Q Consensus        13 ~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~   92 (253)
                      +...|..+|..+..+|+++-|+.+|.++-.        +..+...|.-.|+-+.-.+....|......+     ..-.++
T Consensus       346 ~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d--------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~~n-----~af~~~  412 (443)
T PF04053_consen  346 DPEKWKQLGDEALRQGNIELAEECYQKAKD--------FSGLLLLYSSTGDREKLSKLAKIAEERGDIN-----IAFQAA  412 (443)
T ss_dssp             THHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-HH-----HHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC--------ccccHHHHHHhCCHHHHHHHHHHHHHccCHH-----HHHHHH
Confidence            445566666666666666666666665422        3344445555555544444444443322211     112344


Q ss_pred             HHhCCHHHHHHHHHHH
Q psy11461         93 HEINHYDEAVKHLQRA  108 (253)
Q Consensus        93 ~~~~~~~~A~~~~~~a  108 (253)
                      +.+|+.+++++.+.++
T Consensus       413 ~~lgd~~~cv~lL~~~  428 (443)
T PF04053_consen  413 LLLGDVEECVDLLIET  428 (443)
T ss_dssp             HHHT-HHHHHHHHHHT
T ss_pred             HHcCCHHHHHHHHHHc
Confidence            4556666655555443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=88.60  E-value=20  Score=33.10  Aligned_cols=94  Identities=20%  Similarity=0.055  Sum_probs=73.1

Q ss_pred             cCHHHHHHHHHHHHHhCCCCHHHHHH--HHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhCCHHHHHHHH
Q psy11461         28 RQYEEAINCYTRAIIKNPVIPSYFTN--RALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHL  105 (253)
Q Consensus        28 g~~~~A~~~y~~ai~~~p~~~~~~~~--~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~~~~~~A~~~~  105 (253)
                      |.-..++..|...+..+|.++.+...  +...+...+....+......++..+|++..++.+||.++...|....+...+
T Consensus        45 ~~~~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~  124 (620)
T COG3914          45 GLQALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADI  124 (620)
T ss_pred             CchhHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHH
Confidence            33344788888888888888876433  5788888899999999999999999999999999999988887766655555


Q ss_pred             HH-HHhhchhcccchHH
Q psy11461        106 QR-AYDLSREQNLNYGD  121 (253)
Q Consensus       106 ~~-al~l~p~~~~~~~~  121 (253)
                      .. +....|.+...++.
T Consensus       125 ~~~a~~~~~~~~~~~~~  141 (620)
T COG3914         125 SEIAEWLSPDNAEFLGH  141 (620)
T ss_pred             HHHHHhcCcchHHHHhh
Confidence            44 88888887544433

>KOG2047|consensus

Probab=88.25  E-value=23  Score=33.30  Aligned_cols=101  Identities=14%  Similarity=0.041  Sum_probs=79.6

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCC--CcHHHHHH---HH
Q psy11461         15 KELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEP--SLVKAQFF---LG   89 (253)
Q Consensus        15 ~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p--~~~~a~~~---lg   89 (253)
                      ..|..++...-..|-++..-..|.+.|.+.-..|..-.|.|..+-...-++++.+.|++.|.+.+  .-...|..   ..
T Consensus       478 kiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkf  557 (835)
T KOG2047|consen  478 KIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKF  557 (835)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHH
Confidence            45556677777788899999999999999888999999999999888899999999999999874  33334332   33


Q ss_pred             HHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461         90 QALHEINHYDEAVKHLQRAYDLSREQ  115 (253)
Q Consensus        90 ~~~~~~~~~~~A~~~~~~al~l~p~~  115 (253)
                      ..-+.-.+.+.|...|++|++.+|..
T Consensus       558 i~rygg~klEraRdLFEqaL~~Cpp~  583 (835)
T KOG2047|consen  558 IKRYGGTKLERARDLFEQALDGCPPE  583 (835)
T ss_pred             HHHhcCCCHHHHHHHHHHHHhcCCHH
Confidence            33333347899999999999999853

>KOG4814|consensus

Probab=88.25  E-value=3.8  Score=38.06  Aligned_cols=68  Identities=24%  Similarity=0.230  Sum_probs=58.9

Q ss_pred             HHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCC------cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhcc
Q psy11461         49 SYFTNRALCYLKLKQYVHCCDDCRKALELEPS------LVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQN  116 (253)
Q Consensus        49 ~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~------~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~  116 (253)
                      .++.|-|.-+++..+|..++++|...+.--|.      ..+....++.||..+.+.+.|++++..|-+.+|.++
T Consensus       355 ~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~  428 (872)
T KOG4814|consen  355 TLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSP  428 (872)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccH
Confidence            35667788899999999999999999876554      357788899999999999999999999999998863

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=88.20  E-value=11  Score=37.27  Aligned_cols=97  Identities=11%  Similarity=0.094  Sum_probs=73.0

Q ss_pred             HHHHHHhccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhh-------CHHHHHHHHHHHHhhCCCcHHHHHHHH
Q psy11461         20 EGNRYFGLRQYEEAINCYTRAIIKNPVI---PSYFTNRALCYLKLK-------QYVHCCDDCRKALELEPSLVKAQFFLG   89 (253)
Q Consensus        20 ~g~~~~~~g~~~~A~~~y~~ai~~~p~~---~~~~~~~a~~~~~~~-------~~~~A~~~~~~al~l~p~~~~a~~~lg   89 (253)
                      ..+.+...+.|+.|+..|++...-.|..   -.+.+..|.+.+.+-       .+++|+..|++... .|.-+--|...|
T Consensus       481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  559 (932)
T PRK13184        481 VPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHG-GVGAPLEYLGKA  559 (932)
T ss_pred             CcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcC-CCCCchHHHhHH
Confidence            4567788899999999999999888864   356777777777543       35556555554432 344555567777


Q ss_pred             HHHHHhCCHHHHHHHHHHHHhhchhccc
Q psy11461         90 QALHEINHYDEAVKHLQRAYDLSREQNL  117 (253)
Q Consensus        90 ~~~~~~~~~~~A~~~~~~al~l~p~~~~  117 (253)
                      .+|..+|+|++-+++|.-|++-.|..+.
T Consensus       560 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~  587 (932)
T PRK13184        560 LVYQRLGEYNEEIKSLLLALKRYSQHPE  587 (932)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHhcCCCCc
Confidence            8899999999999999999999988754

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=88.09  E-value=1.2  Score=39.36  Aligned_cols=60  Identities=12%  Similarity=0.229  Sum_probs=46.3

Q ss_pred             HHHHHHHHHHhhCHHHHHHHHHHHHhhC---------CCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Q psy11461         51 FTNRALCYLKLKQYVHCCDDCRKALELE---------PSLVKAQFFLGQALHEINHYDEAVKHLQRAYDL  111 (253)
Q Consensus        51 ~~~~a~~~~~~~~~~~A~~~~~~al~l~---------p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l  111 (253)
                      ...+..++.-+|+|..|++.++.. .++         +.++..+|..|.+|..+++|.+|++.|...+-.
T Consensus       125 ligLlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~y  193 (404)
T PF10255_consen  125 LIGLLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLY  193 (404)
T ss_pred             HHHHHHHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445667777899999999887543 222         345677999999999999999999999987754

>KOG1914|consensus

Probab=88.02  E-value=11  Score=34.44  Aligned_cols=74  Identities=11%  Similarity=0.012  Sum_probs=66.2

Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhc
Q psy11461         38 TRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLS  112 (253)
Q Consensus        38 ~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~  112 (253)
                      ++-|+.+|.+...|+.+-.-+..+ .++++...|++.+...|.++.+|.......+...+|+.-...|.++|..-
T Consensus        10 ~~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv   83 (656)
T KOG1914|consen   10 RERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV   83 (656)
T ss_pred             HHHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence            567889999999999987766555 89999999999999999999999999999999999999999999988643

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=87.77  E-value=4.3  Score=32.18  Aligned_cols=71  Identities=15%  Similarity=0.096  Sum_probs=52.5

Q ss_pred             HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCC----cHHHHHHHHHHHHHhCCHHHHH
Q psy11461         31 EEAINCYTRAIIK-NPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS----LVKAQFFLGQALHEINHYDEAV  102 (253)
Q Consensus        31 ~~A~~~y~~ai~~-~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~----~~~a~~~lg~~~~~~~~~~~A~  102 (253)
                      ..|...|-++=.. .-+++.+.+.+|..|. ..+..+++..+.+++++.+.    |+..+..|+.++..+|+++.|-
T Consensus       123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY  198 (203)
T PF11207_consen  123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY  198 (203)
T ss_pred             HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence            4455555443221 1246788888887776 67889999999999998543    5888999999999999998874

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=87.75  E-value=6.2  Score=34.91  Aligned_cols=95  Identities=12%  Similarity=0.032  Sum_probs=58.7

Q ss_pred             HHHHHHHhccCHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q psy11461         19 DEGNRYFGLRQYEEAINCYTRAIIK---------NPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLG   89 (253)
Q Consensus        19 ~~g~~~~~~g~~~~A~~~y~~ai~~---------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg   89 (253)
                      .+.+.+.-.|||..|++..... .+         -+-....++..|-||+-+++|.+|++.|..++---......+....
T Consensus       127 gLlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~k~~~~~~~  205 (404)
T PF10255_consen  127 GLLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRTKNQYHQRS  205 (404)
T ss_pred             HHHHHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccc
Confidence            3556677889999999986543 11         2234567889999999999999999999998753111110111111


Q ss_pred             HHH-HHhCCHHHHHHHHHHHHhhchh
Q psy11461         90 QAL-HEINHYDEAVKHLQRAYDLSRE  114 (253)
Q Consensus        90 ~~~-~~~~~~~~A~~~~~~al~l~p~  114 (253)
                      .-+ .-.+..+.....+--++.++|.
T Consensus       206 ~q~d~i~K~~eqMyaLlAic~~l~p~  231 (404)
T PF10255_consen  206 YQYDQINKKNEQMYALLAICLSLCPQ  231 (404)
T ss_pred             chhhHHHhHHHHHHHHHHHHHHhCCC
Confidence            111 1123345555566666677775

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=87.67  E-value=3.4  Score=33.95  Aligned_cols=83  Identities=11%  Similarity=0.049  Sum_probs=57.2

Q ss_pred             ccCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCC------cHHHHHHHHHHHHH
Q psy11461         27 LRQYEEAINCYTRAIIKN------PVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS------LVKAQFFLGQALHE   94 (253)
Q Consensus        27 ~g~~~~A~~~y~~ai~~~------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~------~~~a~~~lg~~~~~   94 (253)
                      -..-...|+++.+|+...      ---..+...+|.-|+..|+|++|.+.++.+......      ....+..+..|+..
T Consensus       151 ~~hs~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~  230 (247)
T PF11817_consen  151 VDHSKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKR  230 (247)
T ss_pred             cchHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence            344444455555544432      235667788999999999999999999998655321      23567778889999


Q ss_pred             hCCHHHHHHHHHHHH
Q psy11461         95 INHYDEAVKHLQRAY  109 (253)
Q Consensus        95 ~~~~~~A~~~~~~al  109 (253)
                      +|+.+..+.+.-+.+
T Consensus       231 ~~~~~~~l~~~leLl  245 (247)
T PF11817_consen  231 LGDVEDYLTTSLELL  245 (247)
T ss_pred             hCCHHHHHHHHHHHh
Confidence            999888877765544

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=87.48  E-value=21  Score=32.05  Aligned_cols=97  Identities=11%  Similarity=0.032  Sum_probs=75.6

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHH-----HHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q psy11461         15 KELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPS-----YFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLG   89 (253)
Q Consensus        15 ~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~-----~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg   89 (253)
                      -.++..|..+-+++++.+|...|.+....-.+.+.     ++.+|-..-+-+++.+.-.......-+..|..+......|
T Consensus         7 ~llc~Qgf~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~s~~l~LF~~   86 (549)
T PF07079_consen    7 YLLCFQGFILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGKSAYLPLFKA   86 (549)
T ss_pred             HHHHHhhHHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCchHHHHHHH
Confidence            45678899999999999999999999877655543     4445555555566767666666555566788888888889


Q ss_pred             HHHHHhCCHHHHHHHHHHHHhh
Q psy11461         90 QALHEINHYDEAVKHLQRAYDL  111 (253)
Q Consensus        90 ~~~~~~~~~~~A~~~~~~al~l  111 (253)
                      ...+..+.|..|++.+......
T Consensus        87 L~~Y~~k~~~kal~~ls~w~~~  108 (549)
T PF07079_consen   87 LVAYKQKEYRKALQALSVWKEQ  108 (549)
T ss_pred             HHHHHhhhHHHHHHHHHHHHhh
Confidence            9999999999999998877665

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=87.33  E-value=1.8  Score=38.11  Aligned_cols=61  Identities=20%  Similarity=0.203  Sum_probs=55.1

Q ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhh
Q psy11461         17 LKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALEL   77 (253)
Q Consensus        17 ~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l   77 (253)
                      --.+..+|.+.++.+.|+..-.+.|.++|....-+...|.|+..+.+|.+|.+.+--|.-+
T Consensus       231 etklv~CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAarSamia~ym  291 (569)
T PF15015_consen  231 ETKLVTCYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAARSAMIADYM  291 (569)
T ss_pred             HHHHHHhhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3457889999999999999999999999999999999999999999999999988777544

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=87.30  E-value=8.3  Score=31.16  Aligned_cols=58  Identities=21%  Similarity=0.244  Sum_probs=36.2

Q ss_pred             HHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461         58 YLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQ  115 (253)
Q Consensus        58 ~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~  115 (253)
                      +++-+...+++...+.-++-.|.+......+-+.++-.|+|+.|..-++-+-++.|+.
T Consensus        11 LL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~   68 (273)
T COG4455          11 LLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQD   68 (273)
T ss_pred             HHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCccc
Confidence            4455556666666666666666666555555666666666666666666666666654

>smart00386 HAT HAT (Half-A-TPR) repeats

Probab=87.02  E-value=2  Score=22.17  Aligned_cols=29  Identities=28%  Similarity=0.247  Sum_probs=19.0

Q ss_pred             cCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q psy11461         28 RQYEEAINCYTRAIIKNPVIPSYFTNRAL   56 (253)
Q Consensus        28 g~~~~A~~~y~~ai~~~p~~~~~~~~~a~   56 (253)
                      |+++.|...|.+++...|.++.+|...+.
T Consensus         1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~   29 (33)
T smart00386        1 GDIERARKIYERALEKFPKSVELWLKYAE   29 (33)
T ss_pred             CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence            45666777777777777776666665543

Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.

>KOG0529|consensus

Probab=86.94  E-value=17  Score=32.11  Aligned_cols=94  Identities=14%  Similarity=0.134  Sum_probs=73.7

Q ss_pred             HhccCHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHH------------hhCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q psy11461         25 FGLRQYE-EAINCYTRAIIKNPVIPSYFTNRALCYLK------------LKQYVHCCDDCRKALELEPSLVKAQFFLGQA   91 (253)
Q Consensus        25 ~~~g~~~-~A~~~y~~ai~~~p~~~~~~~~~a~~~~~------------~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~   91 (253)
                      ...|.|+ +++..-.+.+..+|....+|+-+=.++..            +.-+++-+.....++..+|++..+|+.+..+
T Consensus        39 r~~~~yd~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~  118 (421)
T KOG0529|consen   39 REAKEYDEEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWV  118 (421)
T ss_pred             HhccccchHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence            4456664 57777777888899988887766555443            2346677788888999999999999999999


Q ss_pred             HHHhC--CHHHHHHHHHHHHhhchhcccc
Q psy11461         92 LHEIN--HYDEAVKHLQRAYDLSREQNLN  118 (253)
Q Consensus        92 ~~~~~--~~~~A~~~~~~al~l~p~~~~~  118 (253)
                      +...+  ++..-++.+.++++.+|.+...
T Consensus       119 L~~~p~~~~~~EL~lcek~L~~D~RNfh~  147 (421)
T KOG0529|consen  119 LQKNPHSDWNTELQLCEKALKQDPRNFHA  147 (421)
T ss_pred             HHhCCCchHHHHHHHHHHHHhcCcccccc
Confidence            99876  4688899999999999987554

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=86.91  E-value=4.2  Score=32.22  Aligned_cols=35  Identities=20%  Similarity=0.271  Sum_probs=27.2

Q ss_pred             CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461         80 SLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQ  115 (253)
Q Consensus        80 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~  115 (253)
                      +++...+.+|.-|. ..+.+.++..+.+++++.+.+
T Consensus       139 ~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~  173 (203)
T PF11207_consen  139 ETAELQYALATYYT-KRDPEKTIQLLLRALELSNPD  173 (203)
T ss_pred             CCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCC
Confidence            46677777776665 678889999999999987765

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=86.62  E-value=16  Score=29.65  Aligned_cols=63  Identities=10%  Similarity=-0.041  Sum_probs=56.9

Q ss_pred             HHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHH
Q psy11461         21 GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVK   83 (253)
Q Consensus        21 g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~   83 (253)
                      ...+.+.+...+||.....-++..|.+......+-..+.-.|+|++|..-++-+-.+.|+...
T Consensus         8 ~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~   70 (273)
T COG4455           8 ISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTV   70 (273)
T ss_pred             HHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccch
Confidence            446778899999999999999999999999888889999999999999999999999998643

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=86.53  E-value=21  Score=31.13  Aligned_cols=103  Identities=14%  Similarity=0.109  Sum_probs=79.2

Q ss_pred             CCCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--------------C------------CCCHH---HHHHHHHHH
Q psy11461          8 TTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIK--------------N------------PVIPS---YFTNRALCY   58 (253)
Q Consensus         8 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~--------------~------------p~~~~---~~~~~a~~~   58 (253)
                      ..+|-....+.+++.++..+|++..|.+..++|+-.              +            +.|-.   +.+.....+
T Consensus        34 ~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L  113 (360)
T PF04910_consen   34 QKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSL  113 (360)
T ss_pred             HHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHH
Confidence            456778889999999999999999999999998643              1            12222   345567778


Q ss_pred             HHhhCHHHHHHHHHHHHhhCCC-cHH-HHHHHHHHHHHhCCHHHHHHHHHHHHh
Q psy11461         59 LKLKQYVHCCDDCRKALELEPS-LVK-AQFFLGQALHEINHYDEAVKHLQRAYD  110 (253)
Q Consensus        59 ~~~~~~~~A~~~~~~al~l~p~-~~~-a~~~lg~~~~~~~~~~~A~~~~~~al~  110 (253)
                      .+.|-|.-|.++|+-.+.+||. ++- +.+.+-......++|+--+..+.....
T Consensus       114 ~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~  167 (360)
T PF04910_consen  114 GRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA  167 (360)
T ss_pred             HhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence            8899999999999999999998 664 455555666777888777777776554

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=86.48  E-value=7.3  Score=30.23  Aligned_cols=67  Identities=12%  Similarity=0.075  Sum_probs=54.0

Q ss_pred             HHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCC---cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchh
Q psy11461         48 PSYFTNRALCYLKLKQYVHCCDDCRKALELEPS---LVKAQFFLGQALHEINHYDEAVKHLQRAYDLSRE  114 (253)
Q Consensus        48 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~---~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~  114 (253)
                      ..++..+|.-|.+.|++++|++.|.++..-...   -...++.+-.+.+..+++.....++.++-.+-..
T Consensus        36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~  105 (177)
T PF10602_consen   36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEK  105 (177)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc
Confidence            357889999999999999999999998775433   2456777788888899999999998888776433

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>KOG1839|consensus

Probab=86.09  E-value=2.7  Score=41.95  Aligned_cols=100  Identities=20%  Similarity=0.176  Sum_probs=83.9

Q ss_pred             ccHHHHHHHHHHHHhccCHHHHHH------HHHHH-HHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhC------
Q psy11461         12 LSDKELKDEGNRYFGLRQYEEAIN------CYTRA-IIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELE------   78 (253)
Q Consensus        12 ~~a~~~~~~g~~~~~~g~~~~A~~------~y~~a-i~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~------   78 (253)
                      ..+......|......|.+.+|.+      .+... -.++|..+..|..+|..+.+++++++|+....++.-+.      
T Consensus       930 ~~a~~~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ 1009 (1236)
T KOG1839|consen  930 SEAKDSPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGK 1009 (1236)
T ss_pred             chhhhhhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccC
Confidence            567778889999999999998888      44422 23478889999999999999999999999998887552      


Q ss_pred             --CCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Q psy11461         79 --PSLVKAQFFLGQALHEINHYDEAVKHLQRAYDL  111 (253)
Q Consensus        79 --p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l  111 (253)
                        |+....+.+++...+..++...|...+.+++.+
T Consensus      1010 ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l 1044 (1236)
T KOG1839|consen 1010 DSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKL 1044 (1236)
T ss_pred             CCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHh
Confidence              566788999999999999999999999988876

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=86.01  E-value=1.7  Score=25.31  Aligned_cols=25  Identities=20%  Similarity=0.274  Sum_probs=16.4

Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHh
Q psy11461         86 FFLGQALHEINHYDEAVKHLQRAYD  110 (253)
Q Consensus        86 ~~lg~~~~~~~~~~~A~~~~~~al~  110 (253)
                      +.+|.+|..+|+.+.|...++.++.
T Consensus         3 LdLA~ayie~Gd~e~Ar~lL~evl~   27 (44)
T TIGR03504         3 LDLARAYIEMGDLEGARELLEEVIE   27 (44)
T ss_pred             hHHHHHHHHcCChHHHHHHHHHHHH
Confidence            4566666666666666666666663

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>KOG0546|consensus

Probab=85.84  E-value=0.75  Score=39.36  Aligned_cols=78  Identities=15%  Similarity=0.042  Sum_probs=66.2

Q ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q psy11461         14 DKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQA   91 (253)
Q Consensus        14 a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~   91 (253)
                      .....+.+.+-++.+.+..|+..-..++..+++...+++.++..+..+.++++|++++..+....|++....-.+..+
T Consensus       275 ~~~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~  352 (372)
T KOG0546|consen  275 FSIRRNLAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENV  352 (372)
T ss_pred             cccccchHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHh
Confidence            334555777888899999999998888888999999999999999999999999999999999999987655444433

>KOG2041|consensus

Probab=85.73  E-value=4.1  Score=38.30  Aligned_cols=84  Identities=17%  Similarity=0.230  Sum_probs=61.1

Q ss_pred             ccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q psy11461         12 LSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQA   91 (253)
Q Consensus        12 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~   91 (253)
                      ..-.++.++|..+.....|.+|.++|.++-.        .-+.+.|++.+..|++-....+    .-|++.+.+-.+|..
T Consensus       794 ~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~--------~e~~~ecly~le~f~~LE~la~----~Lpe~s~llp~~a~m  861 (1189)
T KOG2041|consen  794 GKEDAFRNIGETFAEMMEWEEAAKYYSYCGD--------TENQIECLYRLELFGELEVLAR----TLPEDSELLPVMADM  861 (1189)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--------hHhHHHHHHHHHhhhhHHHHHH----hcCcccchHHHHHHH
Confidence            3456788999999999999999999987643        3467888888888887554443    336676777777777


Q ss_pred             HHHhCCHHHHHHHHHH
Q psy11461         92 LHEINHYDEAVKHLQR  107 (253)
Q Consensus        92 ~~~~~~~~~A~~~~~~  107 (253)
                      +...|.-++|++.|.+
T Consensus       862 f~svGMC~qAV~a~Lr  877 (1189)
T KOG2041|consen  862 FTSVGMCDQAVEAYLR  877 (1189)
T ss_pred             HHhhchHHHHHHHHHh
Confidence            7777777777665544

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=85.57  E-value=10  Score=31.09  Aligned_cols=52  Identities=17%  Similarity=0.204  Sum_probs=37.3

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhc-ccchHHHHHHHHHHHHHHH
Q psy11461         83 KAQFFLGQALHEINHYDEAVKHLQRAYDLSREQ-NLNYGDDIACQLRIAKKKR  134 (253)
Q Consensus        83 ~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~-~~~~~~~~~~~~~~~~~~~  134 (253)
                      .....+|.-|+..|++++|++.|+.+...-... ...+...+...+..|....
T Consensus       179 ~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~  231 (247)
T PF11817_consen  179 YLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRL  231 (247)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHh
Confidence            345678899999999999999999997665433 3456666666666665543

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=85.41  E-value=4.4  Score=34.09  Aligned_cols=59  Identities=15%  Similarity=0.131  Sum_probs=51.1

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHH
Q psy11461         16 ELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKA   74 (253)
Q Consensus        16 ~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a   74 (253)
                      .+...+..|...|.+.+|+++-++++.++|-+...+..+-..+..+|+--.+++.|.+-
T Consensus       281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery  339 (361)
T COG3947         281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY  339 (361)
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence            34456677889999999999999999999999999999999999999977777777653

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=85.39  E-value=1.7  Score=25.36  Aligned_cols=26  Identities=12%  Similarity=0.147  Sum_probs=23.4

Q ss_pred             HHHHHHHHHhhCHHHHHHHHHHHHhh
Q psy11461         52 TNRALCYLKLKQYVHCCDDCRKALEL   77 (253)
Q Consensus        52 ~~~a~~~~~~~~~~~A~~~~~~al~l   77 (253)
                      .++|.+|..+|+++.|...++.++.-
T Consensus         3 LdLA~ayie~Gd~e~Ar~lL~evl~~   28 (44)
T TIGR03504         3 LDLARAYIEMGDLEGARELLEEVIEE   28 (44)
T ss_pred             hHHHHHHHHcCChHHHHHHHHHHHHc
Confidence            57899999999999999999999953

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=85.18  E-value=8.1  Score=25.40  Aligned_cols=16  Identities=13%  Similarity=0.154  Sum_probs=8.9

Q ss_pred             HHHHHHHHHHhhchhc
Q psy11461        100 EAVKHLQRAYDLSREQ  115 (253)
Q Consensus       100 ~A~~~~~~al~l~p~~  115 (253)
                      +|++.+.+++...|++
T Consensus        31 ~aIe~L~q~~~~~pD~   46 (75)
T cd02682          31 KAIEVLSQIVKNYPDS   46 (75)
T ss_pred             HHHHHHHHHHHhCCCh
Confidence            4444555566666654

This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.

>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A

Probab=84.73  E-value=4.5  Score=30.19  Aligned_cols=50  Identities=16%  Similarity=0.143  Sum_probs=38.7

Q ss_pred             HHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhCCH
Q psy11461         49 SYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHY   98 (253)
Q Consensus        49 ~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~~~~   98 (253)
                      .....+|...+..|++.-|...+..++..+|+|..+...++.++.++|.-
T Consensus        71 d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~  120 (141)
T PF14863_consen   71 DKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQ  120 (141)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHh
Confidence            45666777888889999999999999999999999988888888877643

>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking

Probab=83.74  E-value=2.6  Score=26.97  Aligned_cols=30  Identities=30%  Similarity=0.268  Sum_probs=19.3

Q ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Q psy11461         14 DKELKDEGNRYFGLRQYEEAINCYTRAIIK   43 (253)
Q Consensus        14 a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~   43 (253)
                      +..+...|..+=..|+|.+|+.+|++++..
T Consensus         5 A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~   34 (69)
T PF04212_consen    5 AIELIKKAVEADEAGNYEEALELYKEAIEY   34 (69)
T ss_dssp             HHHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            445556666666677777777777766653

; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....

>COG5113 UFD2 Ubiquitin fusion degradation protein 2 [Posttranslational modification, protein turnover, chaperones]

Probab=83.45  E-value=1.2  Score=41.08  Aligned_cols=34  Identities=26%  Similarity=0.526  Sum_probs=31.3

Q ss_pred             cCCCCCCCCCCCCCCCCcCcHHHHHHHHHHhhhc
Q psy11461        214 VGHFDPVTRVKLSADQLIPNFAMKEVVDNFLQEN  247 (253)
Q Consensus       214 ~g~~DP~tr~~l~~~~l~pN~~lk~a~~~~l~~n  247 (253)
                      ++.+||..|-||+.++..||-.||+-|-.|+...
T Consensus       888 sd~tDPFNRmPLtlddVtpn~eLrekIn~f~k~k  921 (929)
T COG5113         888 SDGTDPFNRMPLTLDDVTPNAELREKINRFYKCK  921 (929)
T ss_pred             cCCCCccccCCCchhhcCCCHHHHHHHHHHHhcc
Confidence            7789999999999999999999999999998543

>PF12123 Amidase02_C: N-acetylmuramoyl-l-alanine amidase; InterPro: IPR021976 This domain is found in bacteria and viruses

Probab=83.41  E-value=0.59  Score=27.38  Aligned_cols=28  Identities=18%  Similarity=0.348  Sum_probs=15.7

Q ss_pred             CCCCCCcCcHHHHHHHHHHhhhcCcccCC
Q psy11461        225 LSADQLIPNFAMKEVVDNFLQENDWAYEY  253 (253)
Q Consensus       225 l~~~~l~pN~~lk~a~~~~l~~n~wa~~~  253 (253)
                      .-.+.-.||- =-+++.+||+++||-|+|
T Consensus        18 y~vT~~~s~~-~L~k~~~wld~rgWwYe~   45 (45)
T PF12123_consen   18 YFVTDPLSDA-ELDKFTAWLDERGWWYEV   45 (45)
T ss_dssp             EEEE----HH-HHHHHHHHHHHTT--EEE
T ss_pred             EEEeCCCCHH-HHHHHHHHHHhcCcEEeC
Confidence            3344445663 346789999999999975

This domain is about 50 amino acids in length. This domain is classified with the enzyme classification code 3.5.1.28 from EC. This domain is the C-terminal of the enzyme which hydrolyses the link between N-acetylmuramoyl residues and L-amino acid residues in certain cell-wall glycopeptides. ; PDB: 2L48_B.

>KOG0985|consensus

Probab=83.41  E-value=16  Score=36.26  Aligned_cols=58  Identities=14%  Similarity=0.026  Sum_probs=43.0

Q ss_pred             ccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHH
Q psy11461         12 LSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKA   74 (253)
Q Consensus        12 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a   74 (253)
                      ..+..|..+|....+.|...+||+.|-+|     +++..|...-.+..+.|.|++-+.++.-|
T Consensus      1102 n~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~Ma 1159 (1666)
T KOG0985|consen 1102 NEPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMA 1159 (1666)
T ss_pred             CChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence            45678888999999999999999998775     45556666666666777777766665433

>PF06416 DUF1076: Protein of unknown function (DUF1076); InterPro: IPR010489 This entry is represented by Bacteriophage 2851, Orf74 (EP2851_74)

Probab=83.27  E-value=0.45  Score=33.45  Aligned_cols=19  Identities=16%  Similarity=0.422  Sum_probs=8.1

Q ss_pred             cCCCCCCCCCCCCCCCCcC
Q psy11461        214 VGHFDPVTRVKLSADQLIP  232 (253)
Q Consensus       214 ~g~~DP~tr~~l~~~~l~p  232 (253)
                      -|..+|+||+|+++++++.
T Consensus        79 ~~~~HPLSREpit~sMIv~   97 (113)
T PF06416_consen   79 EGAPHPLSREPITPSMIVS   97 (113)
T ss_dssp             CT---TTT-----TTTEE-
T ss_pred             cCCCCCCccCCCChhhEec
Confidence            5567999999999998753

The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.; PDB: 2KKX_A 2KKY_A.

>KOG1310|consensus

Probab=82.25  E-value=4.5  Score=36.83  Aligned_cols=75  Identities=15%  Similarity=-0.020  Sum_probs=62.6

Q ss_pred             CCCcccHHHHHHHHHHHHhc---cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcH
Q psy11461          8 TTNNLSDKELKDEGNRYFGL---RQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLV   82 (253)
Q Consensus         8 ~~~~~~a~~~~~~g~~~~~~---g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~   82 (253)
                      +..|.....+.+.+..++++   |+.-.|+.....|+.++|....+++.++.++..++++.+|+.+...+....|.+.
T Consensus       402 q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~~~~alq~~~Ptd~  479 (758)
T KOG1310|consen  402 QYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALSCHWALQMSFPTDV  479 (758)
T ss_pred             hhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhhHHHHhhcCchhh
Confidence            34566677788888888774   5666788888899999999999999999999999999999999988888888543

>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins

Probab=81.02  E-value=9.1  Score=27.83  Aligned_cols=28  Identities=14%  Similarity=0.049  Sum_probs=24.0

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHh
Q psy11461         16 ELKDEGNRYFGLRQYEEAINCYTRAIIK   43 (253)
Q Consensus        16 ~~~~~g~~~~~~g~~~~A~~~y~~ai~~   43 (253)
                      .+..+|+..++.+++-.+|-+|++|+.+
T Consensus         3 ~htllAd~a~~~~~~l~si~hYQqAls~   30 (140)
T PF10952_consen    3 KHTLLADQAFKEADPLRSILHYQQALSL   30 (140)
T ss_pred             hHHHHHHHHhhcccHHHHHHHHHHHHHH
Confidence            3567889999999999999999999876

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=80.66  E-value=51  Score=30.98  Aligned_cols=105  Identities=16%  Similarity=0.090  Sum_probs=76.1

Q ss_pred             CCCcccHHHHHHHHHHHH-hccCHHHHHHHHHHHHHhCCC--CH----HHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCC
Q psy11461          8 TTNNLSDKELKDEGNRYF-GLRQYEEAINCYTRAIIKNPV--IP----SYFTNRALCYLKLKQYVHCCDDCRKALELEPS   80 (253)
Q Consensus         8 ~~~~~~a~~~~~~g~~~~-~~g~~~~A~~~y~~ai~~~p~--~~----~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~   80 (253)
                      .+....+...+.+|..++ .-.+++.|..++.+++.+...  ..    .+.+.++.++.+.+... |...++++|+...+
T Consensus        53 l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~  131 (608)
T PF10345_consen   53 LSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSET  131 (608)
T ss_pred             CCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhc
Confidence            344567889999999998 578999999999999888643  22    23456688888877766 99999999986544


Q ss_pred             ----cHHHHHHHH--HHHHHhCCHHHHHHHHHHHHhhch
Q psy11461         81 ----LVKAQFFLG--QALHEINHYDEAVKHLQRAYDLSR  113 (253)
Q Consensus        81 ----~~~a~~~lg--~~~~~~~~~~~A~~~~~~al~l~p  113 (253)
                          ...-.+++-  ..+...+++..|++.++....+..
T Consensus       132 ~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~  170 (608)
T PF10345_consen  132 YGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLAN  170 (608)
T ss_pred             cCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhh
Confidence                222223332  222233799999999999988764

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>KOG0289|consensus

Probab=80.26  E-value=0.82  Score=40.04  Aligned_cols=31  Identities=29%  Similarity=0.553  Sum_probs=23.2

Q ss_pred             HHHHHH--HHhhchhcCCCCCCCCCCCCCCCCcC
Q psy11461        201 NDLFVA--IDERRRKVGHFDPVTRVKLSADQLIP  232 (253)
Q Consensus       201 ~~~f~~--~~~~~~~~g~~DP~tr~~l~~~~l~p  232 (253)
                      +.+|++  +...-..+|. ||+|-+||+.++|+|
T Consensus        20 g~vfEkrLIEqyI~e~G~-DPIt~~pLs~eelV~   52 (506)
T KOG0289|consen   20 GHVFEKRLIEQYIAETGK-DPITNEPLSIEELVE   52 (506)
T ss_pred             cchHHHHHHHHHHHHcCC-CCCCCCcCCHHHeee
Confidence            556653  4444556885 999999999999886

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=80.17  E-value=29  Score=32.55  Aligned_cols=95  Identities=11%  Similarity=0.093  Sum_probs=70.3

Q ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-------CC---C----------------HHHHHHHHHHHHHhhCHHHH
Q psy11461         14 DKELKDEGNRYFGLRQYEEAINCYTRAIIKN-------PV---I----------------PSYFTNRALCYLKLKQYVHC   67 (253)
Q Consensus        14 a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~-------p~---~----------------~~~~~~~a~~~~~~~~~~~A   67 (253)
                      +..++--|..+...|..+.|.+++.+++..-       +.   .                ..+....+.+.+-.++|..|
T Consensus       301 ~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a  380 (608)
T PF10345_consen  301 ALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKA  380 (608)
T ss_pred             HHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHH
Confidence            4456666777788888878888888887651       11   0                01345567777789999999


Q ss_pred             HHHHHHHHhhCC---C------cHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q psy11461         68 CDDCRKALELEP---S------LVKAQFFLGQALHEINHYDEAVKHLQRA  108 (253)
Q Consensus        68 ~~~~~~al~l~p---~------~~~a~~~lg~~~~~~~~~~~A~~~~~~a  108 (253)
                      ......+.....   .      .+..+|..|..+...|+.+.|+..|.+.
T Consensus       381 ~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~  430 (608)
T PF10345_consen  381 TQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKP  430 (608)
T ss_pred             HHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhh
Confidence            999988776532   2      3677899999999999999999999833

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	253
2c2l_A	281	Crystal Structure Of The Chip U-Box E3 Ubiquitin Li		8e-63
3q47_B	137	Crystal Structure Of Tpr Domain Of Chip Complexed W		2e-39
2f42_A	179	Dimerization And U-Box Domains Of Zebrafish C-Termi		3e-29
2vyi_A	131	Crystal Structure Of The Tpr Domain Of Human Sgt Le		2e-12
2c2v_S	78	Crystal Structure Of The Chip-Ubc13-Uev1a Complex L		3e-11
2oxq_C	80	Structure Of The Ubch5 :chip U-Box Complex Length =		4e-11
2lni_A	133	Solution Nmr Structure Of Stress-Induced-Phosphopro		3e-10
3sz7_A	164	Crystal Structure Of The Sgt2 Tpr Domain From Asper		2e-09
1na0_A	125	Design Of Stable Alpha-Helical Arrays From An Ideal		1e-08
2fo7_A	136	Crystal Structure Of An 8 Repeat Consensus Tpr Supe		2e-08
2bug_A	140	Solution Structure Of The Tpr Domain From Protein P		2e-08
1a17_A	166	Tetratricopeptide Repeats Of Protein Phosphatase 5		2e-08
1wao_1	477	Pp5 Structure Length = 477		5e-08
1ihg_A	370	Bovine Cyclophilin 40, Monoclinic Form Length = 370		8e-08
2wqh_A	125	Crystal Structure Of Ctpr3y3 Length = 125		2e-07
2dba_A	148	The Solution Structure Of The Tetratrico Peptide Re		5e-07
3kd7_A	125	Designed Tpr Module (Ctpr390) In Complex With Its P		8e-07
3upv_A	126	Tpr2b-Domain:phsp70-Complex Of Yeast Sti1 Length =		1e-06
3uq3_A	258	Tpr2ab-Domain:phsp90-Complex Of Yeast Sti1 Length =		2e-06
4gco_A	126	Central Domain Of Stress-Induced Protein-1 (Sti-1)		5e-06
3fp2_A	537	Crystal Structure Of Tom71 Complexed With Hsp82 C-T		7e-06
3lca_A	533	Structure Of Tom71 Complexed With Hsp70 Ssa1 C Term		7e-06
1elw_A	118	Crystal Structure Of The Tpr1 Domain Of Hop In Comp		8e-06
2l6j_A	111	Tah1 Complexed By Meevd Length = 111		2e-05
4gcn_A	127	N-Terminal Domain Of Stress-Induced Protein-1 (Sti-		2e-04
1w3b_A	388	The Superhelical Tpr Domain Of O-Linked Glcnac Tran		2e-04
2gw1_A	514	Crystal Structure Of The Yeast Tom70 Length = 514		2e-04
1na3_A	91	Design Of Stable Alpha-Helical Arrays From An Ideal		3e-04
1kt0_A	457	Structure Of The Large Fkbp-like Protein, Fkbp51, I		5e-04
2avp_A	70	Crystal Structure Of An 8 Repeat Consensus Tpr Supe		6e-04
1kt1_A	457	Structure Of The Large Fkbp-Like Protein, Fkbp51, I		7e-04
1qz2_A	336	Crystal Structure Of Fkbp52 C-Terminal Domain Compl		7e-04

>pdb|2C2L|A Chain A, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase Length = 281

Iteration: 1
 Score =  236 bits (602), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 132/281 (46%), Positives = 172/281 (61%), Gaps = 42/281 (14%)
Query: 13  SDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCR 72
           S +ELK++GNR F  R+Y EA  CY RAI +NP++  Y+TNRALCYLK++Q      DCR
Sbjct: 3   SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCR 62
Query: 73  KALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIACQLRIAKK 132
           +ALEL+   VKA FFLGQ   E+  YDEA+ +LQRAY L++EQ LN+GDDI   LRIAKK
Sbjct: 63  RALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKK 122
Query: 133 KRWAETEEKRIAQEIELLTYLNRLITEDAEKELGSIRRDAETKRLDGDA-VQEAVMRIEA 191
           KRW   EE+RI QE EL +YL RLI  + E+EL   +R+ E    DG    Q+A   IEA
Sbjct: 123 KRWNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRAQQAC--IEA 180
Query: 192 RRDRSMAELNDLFVAIDERRRK-------------------------------------- 213
           + D+ MA++++LF  +DE+R+K                                      
Sbjct: 181 KHDKYMADMDELFSQVDEKRKKRDIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQ 240
Query: 214 -VGHFDPVTRVKLSADQLIPNFAMKEVVDNFLQENDWAYEY 253
            VGHF+PVTR  L+ +QLIPN AMKEV+D F+ EN W  +Y
Sbjct: 241 RVGHFNPVTRSPLTQEQLIPNLAMKEVIDAFISENGWVEDY 281

>pdb|3Q47|B Chain B, Crystal Structure Of Tpr Domain Of Chip Complexed With Pseudophosphorylated Smad1 Peptide Length = 137

Iteration: 1
 Score =  159 bits (401), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 76/130 (58%), Positives = 95/130 (73%)
Query: 13  SDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCR 72
           S +ELK++GNR F  R+Y EA  CY RAI +NP++  Y+TNRALCYLK++Q      DCR
Sbjct: 8   SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCR 67
Query: 73  KALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIACQLRIAKK 132
           +ALEL+   VKA FFLGQ   E+  YDEA+ +LQRAY L++EQ LN+GDDI   LRIAKK
Sbjct: 68  RALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKK 127
Query: 133 KRWAETEEKR 142
           KRW   EE+R
Sbjct: 128 KRWNSIEERR 137

>pdb|2F42|A Chain A, Dimerization And U-Box Domains Of Zebrafish C-Terminal Of Hsp70 Interacting Protein Length = 179

Iteration: 1
 Score =  125 bits (313), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 69/178 (38%), Positives = 98/178 (55%), Gaps = 44/178 (24%)
Query: 115 QNLNYGDDIACQLRIAKKKRWAETEEKRIAQEIELLTYLNRLITEDAEKELGSIRRDAET 174
           Q LN+GDDI   LRIAKKKRW   EEKRI+QE EL  YL++LI  + E+EL    + ++ 
Sbjct: 7   QRLNFGDDIPSALRIAKKKRWNSIEEKRISQENELHAYLSKLILAEKERELDDRVKQSDD 66
Query: 175 KRLDGDAVQEAVMRIEARRDRSMAELNDLFVAIDERRRK--------------------- 213
            +  GD     + +++++ D+ + ++++LF  +DE+R+K                     
Sbjct: 67  SQNGGD-----ISKMKSKHDKYLMDMDELFSQVDEKRKKREIPDYLCGKISFELMREPCI 121
Query: 214 ------------------VGHFDPVTRVKLSADQLIPNFAMKEVVDNFLQENDWAYEY 253
                             VGHFDPVTR  L+ DQLIPN AMKEV+D F+QEN W  +Y
Sbjct: 122 TPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNLAMKEVIDAFIQENGWVEDY 179

>pdb|2VYI|A Chain A, Crystal Structure Of The Tpr Domain Of Human Sgt Length = 131

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 36/95 (37%), Positives = 53/95 (55%)
Query: 17  LKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALE 76
           LK EGN    +  +E A++ Y +AI  NP    YF NRA  Y KL  Y     DC +A+ 
Sbjct: 15  LKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAIC 74
Query: 77  LEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDL 111
           ++P+  KA   +G AL  +N + EAV + ++A +L
Sbjct: 75  IDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALEL 109

>pdb|2C2V|S Chain S, Crystal Structure Of The Chip-Ubc13-Uev1a Complex Length = 78

Iteration: 1
 Score = 65.1 bits (157), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 27/47 (57%), Positives = 36/47 (76%)
Query: 207 IDERRRKVGHFDPVTRVKLSADQLIPNFAMKEVVDNFLQENDWAYEY 253
           I+E  ++VGHF+PVTR  L+ +QLIPN AMKEV+D F+ EN W  +Y
Sbjct: 32  IEEHLQRVGHFNPVTRSPLTQEQLIPNLAMKEVIDAFISENGWVEDY 78

>pdb|2OXQ|C Chain C, Structure Of The Ubch5 :chip U-Box Complex Length = 80

Iteration: 1
 Score = 65.1 bits (157), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 28/41 (68%), Positives = 34/41 (82%)
Query: 207 IDERRRKVGHFDPVTRVKLSADQLIPNFAMKEVVDNFLQEN 247
           I+E  ++VGHFDPVTR  L+ DQLIPN AMKEV+D F+QEN
Sbjct: 40  IEEHLQRVGHFDPVTRSPLTQDQLIPNLAMKEVIDAFIQEN 80

>pdb|2LNI|A Chain A, Solution Nmr Structure Of Stress-Induced-Phosphoprotein 1 Sti1 From Homo Sapiens, Northeast Structural Genomics Consortium Target Hr4403e Length = 133

Iteration: 1
 Score = 62.0 bits (149), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 52/95 (54%)
Query: 17  LKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALE 76
           +K++GN  F    Y +A+  YT AI +NP     ++NRA CY KL ++     DC + ++
Sbjct: 19  VKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQ 78
Query: 77  LEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDL 111
           LEP+ +K       AL  +  Y +A+   Q+A DL
Sbjct: 79  LEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDL 113

>pdb|3SZ7|A Chain A, Crystal Structure Of The Sgt2 Tpr Domain From Aspergillus Fumigatus Length = 164

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/131 (32%), Positives = 61/131 (46%), Gaps = 13/131 (9%)
Query: 13  SDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCR 72
           SDK LK EGN     ++Y +AI+ YT+A+   P  P Y +NRA  Y    Q+    +D  
Sbjct: 11  SDK-LKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAE 69
Query: 73  KALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIACQLRIAKK 132
            A  ++P   KA   LG A  ++  Y    K  + AY+   E   N G D          
Sbjct: 70  LATVVDPKYSKAWSRLGLARFDMADY----KGAKEAYEKGIEAEGNGGSDA--------M 117
Query: 133 KRWAETEEKRI 143
           KR  ET +++I
Sbjct: 118 KRGLETTKRKI 128

>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 125

Iteration: 1
 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 50/91 (54%)
Query: 21  GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
           GN Y+    Y+EAI  Y +A+  +P     + N    Y K   Y    +  +KALEL+P+
Sbjct: 16  GNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN 75
Query: 81  LVKAQFFLGQALHEINHYDEAVKHLQRAYDL 111
             +A + LG A ++   YDEA+++ Q+A +L
Sbjct: 76  NAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 106

>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix (Trigonal Crystal Form) Length = 136

Iteration: 1
 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 49/91 (53%)
Query: 21  GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
           GN Y+    Y+EAI  Y +A+  +P     + N    Y K   Y    +  +KALEL+P 
Sbjct: 8   GNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 67
Query: 81  LVKAQFFLGQALHEINHYDEAVKHLQRAYDL 111
             +A + LG A ++   YDEA+++ Q+A +L
Sbjct: 68  SAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 98

>pdb|1A17|A Chain A, Tetratricopeptide Repeats Of Protein Phosphatase 5 Length = 166

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 41/71 (57%)
Query: 16 ELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKAL 75
          ELK + N YF  + YE AI  Y++AI  NP    Y+ NR+L YL+ + Y +   D  +A+
Sbjct: 15 ELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAI 74
Query: 76 ELEPSLVKAQF 86
          EL+   +K  +
Sbjct: 75 ELDKKYIKGYY 85

>pdb|1WAO|1 Chain 1, Pp5 Structure Length = 477

Iteration: 1
 Score = 54.7 bits (130), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 42/72 (58%)
Query: 15 KELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKA 74
          +ELK + N YF  + YE AI  Y++AI  NP    Y+ NR+L YL+ + Y +   D  +A
Sbjct: 7  EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRA 66
Query: 75 LELEPSLVKAQF 86
          +EL+   +K  +
Sbjct: 67 IELDKKYIKGYY 78

>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form Length = 370

Iteration: 1
 Score = 53.9 bits (128), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 34/119 (28%), Positives = 56/119 (47%), Gaps = 16/119 (13%)
Query: 12  LSDKELKDEGNRYFGLRQYEEAINCYTRAI----------------IKNPVIPSYFTNRA 55
           L  ++LK+ GN +F  + +E AI  YT+ +                   PV  S   N  
Sbjct: 221 LISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIG 280
Query: 56  LCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSRE 114
            C LK+  +    D C +ALE++PS  KA +   Q    +  YD+A+  L++A +++ E
Sbjct: 281 ACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE 339

>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3 Length = 125

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 48/91 (52%)
Query: 21  GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
           GN Y+    Y+EAI  Y +A+   P     + N    Y K   Y    +  +KALEL P+
Sbjct: 16  GNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPN 75
Query: 81  LVKAQFFLGQALHEINHYDEAVKHLQRAYDL 111
             +A + LG A ++   YDEA+++ Q+A +L
Sbjct: 76  NAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 106

>pdb|2DBA|A Chain A, The Solution Structure Of The Tetratrico Peptide Repeat Of Human Smooth Muscle Cell Associated Protein-1, Isoform 2 Length = 148

Iteration: 1
 Score = 51.2 bits (121), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 37/108 (34%), Positives = 53/108 (49%), Gaps = 5/108 (4%)
Query: 8   TTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPS----YFTNRALCYLKLKQ 63
           T    S ++L+ EGN  F    Y  A+  YT+A+  +   P        NRA C+LKL+ 
Sbjct: 22  TPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLD-ATPQDQAVLHRNRAACHLKLED 80
Query: 64  YVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDL 111
           Y     +  KA+E +   VKA +   QAL ++   D+AV  LQR   L
Sbjct: 81  YDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSL 128

>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its Peptide-Ligand (Hsp90 Peptide) Length = 125

Iteration: 1
 Score = 50.8 bits (120), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 52/99 (52%)
Query: 13  SDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCR 72
           S +  K+ GN Y+    Y++AI  Y +A+  +P   S + N    Y K   Y    +  +
Sbjct: 8   SAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQ 67
Query: 73  KALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDL 111
           KALEL+P+  KA +  G A ++   Y +A++  Q+A +L
Sbjct: 68  KALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALEL 106

>pdb|3UPV|A Chain A, Tpr2b-Domain:phsp70-Complex Of Yeast Sti1 Length = 126

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 45/98 (45%)
Query: 11  NLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDD 70
           ++  +E + EG  YF    +  A+  YT  I + P     ++NRA    KL  +     D
Sbjct: 1   SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIAD 60
Query: 71  CRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRA 108
           C KA+E +P+ V+A      A   +  Y  A++ L  A
Sbjct: 61  CNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAA 98

>pdb|3UQ3|A Chain A, Tpr2ab-Domain:phsp90-Complex Of Yeast Sti1 Length = 258

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 42/93 (45%)
Query: 16  ELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKAL 75
           E + EG  YF    +  A+  YT  I + P     ++NRA    KL  +     DC KA+
Sbjct: 141 EARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAI 200
Query: 76  ELEPSLVKAQFFLGQALHEINHYDEAVKHLQRA 108
           E +P+ V+A      A   +  Y  A++ L  A
Sbjct: 201 EKDPNFVRAYIRKATAQIAVKEYASALETLDAA 233

>pdb|4GCO|A Chain A, Central Domain Of Stress-Induced Protein-1 (Sti-1) From C.Elegans Length = 126

Iteration: 1
 Score = 48.1 bits (113), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 46/96 (47%), Gaps = 4/96 (4%)
Query: 15  KELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKA 74
           +E K++GN YF    Y  A+  Y  A+ ++P     ++NRA C  KL ++    DDC   
Sbjct: 14  QEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTC 73
Query: 75  LELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYD 110
           + L+   +K        L  +  + +A    QRAY+
Sbjct: 74  IRLDSKFIKGYIRKAACLVAMREWSKA----QRAYE 105

>pdb|3FP2|A Chain A, Crystal Structure Of Tom71 Complexed With Hsp82 C-Terminal Fragment Length = 537

Iteration: 1
 Score = 47.4 bits (111), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 48/97 (49%), Gaps = 6/97 (6%)
Query: 16  ELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKAL 75
           +LK+ GN +F  + + EAI  Y  AI  +P  P +++N + CY+         +   KAL
Sbjct: 27  QLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKAL 86
Query: 76  ELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLS 112
           E++P   KA      A   + ++ +A+      +DLS
Sbjct: 87  EIKPDHSKALLRRASANESLGNFTDAM------FDLS 117

>pdb|3LCA|A Chain A, Structure Of Tom71 Complexed With Hsp70 Ssa1 C Terminal Tail Indicating Conformational Plasticity Length = 533

Iteration: 1
 Score = 47.4 bits (111), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 48/97 (49%), Gaps = 6/97 (6%)
Query: 16  ELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKAL 75
           +LK+ GN +F  + + EAI  Y  AI  +P  P +++N + CY+         +   KAL
Sbjct: 23  QLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKAL 82
Query: 76  ELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLS 112
           E++P   KA      A   + ++ +A+      +DLS
Sbjct: 83  EIKPDHSKALLRRASANESLGNFTDAM------FDLS 113

>pdb|1ELW|A Chain A, Crystal Structure Of The Tpr1 Domain Of Hop In Complex With A Hsc70 Peptide Length = 118

Iteration: 1
 Score = 47.4 bits (111), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 45/86 (52%)
Query: 16  ELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKAL 75
           ELK++GN+   +   ++A+ CY+ AI  +P     ++NR+  Y K   Y    +D  K +
Sbjct: 6   ELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTV 65
Query: 76  ELEPSLVKAQFFLGQALHEINHYDEA 101
           +L+P   K       AL  +N ++EA
Sbjct: 66  DLKPDWGKGYSRKAAALEFLNRFEEA 91

>pdb|2L6J|A Chain A, Tah1 Complexed By Meevd Length = 111

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 32/58 (55%)
Query: 18 KDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKAL 75
          K++GN  F    Y EA++CY + I   P  P  ++N+A+  +KL +Y      C++ L
Sbjct: 8  KEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGL 65

>pdb|4GCN|A Chain A, N-Terminal Domain Of Stress-Induced Protein-1 (Sti-1) From C.Elegans Length = 127

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/118 (26%), Positives = 55/118 (46%), Gaps = 9/118 (7%)
Query: 9   TNNLSDKEL--KDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVH 66
           +N ++D  +  KD GN  +  + +E+A   Y +AI  +P   +++ N+A  Y + K++  
Sbjct: 1   SNAMTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAE 60
Query: 67  CCDDCRKALELEPS-------LVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNL 117
           C   C KA+E+          + KA    G A  + N    AV+   R+    R+  L
Sbjct: 61  CVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDPEL 118

>pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase Reveals Structural Similarities To Importin Alpha. Length = 388

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/108 (29%), Positives = 47/108 (43%), Gaps = 1/108 (0%)
Query: 18  KDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALEL 77
            D GN    L + EEA  CY +AI   P     ++N    +    +         KA+ L
Sbjct: 139 SDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL 198
Query: 78  EPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIAC 125
           +P+ + A   LG  L E   +D AV    RA  LS    + +G ++AC
Sbjct: 199 DPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHG-NLAC 245

>pdb|2GW1|A Chain A, Crystal Structure Of The Yeast Tom70 Length = 514

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 40/68 (58%), Gaps = 3/68 (4%)
Query: 17 LKDEGNRYFGLRQYEEAINCYTRAI-IKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKAL 75
          LKD+GN++F  ++Y++AI  Y  A+ +K    P +++N + CY+ +       +   KAL
Sbjct: 9  LKDKGNQFFRNKKYDDAIKYYNWALELKED--PVFYSNLSACYVSVGDLKKVVEMSTKAL 66
Query: 76 ELEPSLVK 83
          EL+P   K
Sbjct: 67 ELKPDYSK 74

>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 91

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 35/61 (57%)
Query: 51  FTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYD 110
           + N    Y K   Y    +  +KALEL+P+  +A + LG A ++   YDEA+++ Q+A +
Sbjct: 12  WYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71
Query: 111 L 111
           L
Sbjct: 72  L 72

>pdb|1KT0|A Chain A, Structure Of The Large Fkbp-like Protein, Fkbp51, Involved In Steroid Receptor Complexes Length = 457

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 26/111 (23%), Positives = 52/111 (46%), Gaps = 15/111 (13%)
Query: 17  LKDEGNRYFGLRQYEEAINCYTRAI---------------IKNPVIPSYFTNRALCYLKL 61
           +K++G  YF   +Y +A+  Y + +                    + + F N A+CYLKL
Sbjct: 271 VKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKL 330
Query: 62  KQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLS 112
           ++Y    + C KAL L+ +  K  +  G+A   +N ++ A    ++  +++
Sbjct: 331 REYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN 381

>pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix Length = 70

Iteration: 1
 Score = 41.2 bits (95), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 34/61 (55%)
Query: 51  FTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYD 110
           + N    Y K   Y    +  +KALEL+P   +A + LG A ++   YDEA+++ Q+A +
Sbjct: 6   WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 65
Query: 111 L 111
           L
Sbjct: 66  L 66

>pdb|1KT1|A Chain A, Structure Of The Large Fkbp-Like Protein, Fkbp51, Involved In Steroid Receptor Complexes Length = 457

Iteration: 1
 Score = 40.8 bits (94), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 26/111 (23%), Positives = 52/111 (46%), Gaps = 15/111 (13%)
Query: 17  LKDEGNRYFGLRQYEEAINCYTRAI---------------IKNPVIPSYFTNRALCYLKL 61
           +K++G  YF   +Y +A+  Y + +                    + + F N A+CYLKL
Sbjct: 271 VKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKL 330
Query: 62  KQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLS 112
           ++Y    + C KAL L+ +  K  +  G+A   +N ++ A    ++  +++
Sbjct: 331 REYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN 381

>pdb|1QZ2|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With The C-Terminal Peptide Meevd Of Hsp90 Length = 336

Iteration: 1
 Score = 40.8 bits (94), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 39/150 (26%), Positives = 66/150 (44%), Gaps = 21/150 (14%)
Query: 17  LKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNR----------------ALCYLK 60
           +K+ G  YF   +Y++A+  Y + I+      S F+N                 A+C+LK
Sbjct: 150 VKERGTVYFKEGKYKQALLQYKK-IVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLK 208
Query: 61  LKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNYG 120
           L+ +    + C KALEL+ +  K  F  G+A   +N ++ A    Q+   L         
Sbjct: 209 LQAFSAAIESCNKALELDSNNEKGLFRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKT 268
Query: 121 DDIACQLRI----AKKKRWAETEEKRIAQE 146
               CQ RI    A++K+      +R+A+E
Sbjct: 269 QLAVCQQRIRRQLAREKKLYANMFERLAEE 298

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	253
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	2e-70
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	6e-46
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	5e-32
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	2e-31
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	6e-30
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	1e-29
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	2e-29
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	6e-09
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	2e-29
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	5e-07
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	2e-29
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	1e-07
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	3e-29
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	7e-05
2l6j_A	111	TPR repeat-containing protein associated with HSP;	4e-29
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	6e-27
2f42_A	179	STIP1 homology and U-box containing protein 1; cha	3e-25
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	3e-24
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	1e-23
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	3e-23
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	7e-23
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	1e-21
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	1e-20
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	2e-20
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-19
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	1e-17
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-14
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	4e-10
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	9e-10
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-09
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	9e-09
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	2e-19
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	2e-18
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	1e-11
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	4e-11
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	5e-11
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	2e-10
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	1e-04
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	3e-19
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	2e-18
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	2e-15
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	8e-11
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	8e-10
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	8e-10
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	3e-09
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	3e-18
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	2e-10
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	4e-04
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	3e-18
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	5e-08
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	7e-05
2gw1_A	514	Mitochondrial precursor proteins import receptor;	7e-18
2gw1_A	514	Mitochondrial precursor proteins import receptor;	5e-16
2gw1_A	514	Mitochondrial precursor proteins import receptor;	1e-14
2gw1_A	514	Mitochondrial precursor proteins import receptor;	4e-14
2gw1_A	514	Mitochondrial precursor proteins import receptor;	6e-11
2gw1_A	514	Mitochondrial precursor proteins import receptor;	3e-09
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-17
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-14
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-14
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	3e-14
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-12
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-10
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	8e-09
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	4e-08
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	4e-07
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	3e-17
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	3e-17
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	1e-05
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	5e-16
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-15
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	1e-12
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-12
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	1e-11
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	8e-11
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	9e-10
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-09
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-05
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	3e-05
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	6e-05
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	5e-15
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	1e-12
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	9e-06
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	9e-06
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-14
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	4e-14
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	7e-14
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-13
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-13
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	7e-10
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-05
3u4t_A	272	TPR repeat-containing protein; structural genomics	1e-14
3u4t_A	272	TPR repeat-containing protein; structural genomics	4e-14
3u4t_A	272	TPR repeat-containing protein; structural genomics	6e-13
3u4t_A	272	TPR repeat-containing protein; structural genomics	2e-12
3u4t_A	272	TPR repeat-containing protein; structural genomics	9e-08
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	1e-14
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	7e-14
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	2e-13
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	1e-09
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	3e-07
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	2e-13
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	7e-13
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	1e-12
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	8e-12
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	2e-09
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	1e-05
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	4e-13
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	2e-09
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	1e-07
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	4e-07
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	5e-07
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	5e-13
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	1e-12
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	3e-12
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	4e-06
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	6e-13
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	9e-13
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	2e-10
2kat_A	115	Uncharacterized protein; NESG, structure, structur	9e-13
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	1e-12
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	1e-12
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	8e-05
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	1e-12
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	1e-05
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	4e-05
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	2e-12
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	9e-12
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	9e-12
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	4e-10
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	9e-09
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	3e-06
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	3e-12
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	5e-12
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	7e-12
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	2e-05
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	3e-12
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	3e-12
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	7e-12
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-11
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-11
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-11
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	5e-11
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	5e-11
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	8e-11
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	3e-07
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-04
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	4e-12
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	1e-09
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	2e-08
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	2e-08
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	3e-08
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	7e-12
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	1e-09
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	4e-07
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	4e-06
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	7e-12
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	1e-08
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	8e-05
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	2e-11
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	3e-09
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	2e-05
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	3e-11
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	8e-08
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	2e-06
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	7e-06
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	8e-11
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	2e-10
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	6e-10
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	2e-05
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	9e-11
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	3e-10
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	5e-08
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	9e-07
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	2e-06
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-10
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-10
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-10
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-09
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-09
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	5e-09
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	7e-09
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	6e-08
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	8e-08
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-07
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-07
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-07
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	4e-07
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-06
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-06
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-05
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-04
3k9i_A	117	BH0479 protein; putative protein binding protein,	3e-10
3k9i_A	117	BH0479 protein; putative protein binding protein,	6e-05
4g1t_A	472	Interferon-induced protein with tetratricopeptide	1e-09
4g1t_A	472	Interferon-induced protein with tetratricopeptide	8e-09
4g1t_A	472	Interferon-induced protein with tetratricopeptide	3e-08
4g1t_A	472	Interferon-induced protein with tetratricopeptide	1e-05
4g1t_A	472	Interferon-induced protein with tetratricopeptide	2e-05
4g1t_A	472	Interferon-induced protein with tetratricopeptide	1e-04
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	1e-09
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	6e-09
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	9e-05
2kr4_A	85	Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri	5e-08
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	6e-08
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	1e-06
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	7e-08
1wgm_A	98	Ubiquitin conjugation factor E4A; ubiquitinating e	1e-07
2kre_A	100	Ubiquitin conjugation factor E4 B; U-box domain, E	3e-07
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	3e-07
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	8e-06
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	7e-07
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	2e-06
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	8e-06
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	1e-06
1t1h_A	78	Gspef-atpub14, armadillo repeat containing protein	1e-06
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	2e-06
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	5e-06
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	3e-05
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	3e-06
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	1e-05
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	2e-05
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	6e-04
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	7e-04
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	3e-06
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	4e-06
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	4e-05
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	4e-06
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	4e-04
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	1e-05
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	1e-05
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	3e-04
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	2e-05
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	2e-05
3m62_A	968	Ubiquitin conjugation factor E4; armadillo-like re	3e-05
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	5e-05
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	3e-04
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	3e-04

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281

 Score =  216 bits (552), Expect = 2e-70
 Identities = 128/278 (46%), Positives = 170/278 (61%), Gaps = 40/278 (14%)

Query: 15  KELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKA 74
           +ELK++GNR F  R+Y EA  CY RAI +NP++  Y+TNRALCYLK++Q      DCR+A
Sbjct: 5   QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRA 64

Query: 75  LELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIACQLRIAKKKR 134
           LEL+   VKA FFLGQ   E+  YDEA+ +LQRAY L++EQ LN+GDDI   LRIAKKKR
Sbjct: 65  LELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKR 124

Query: 135 WAETEEKRIAQEIELLTYLNRLITEDAEKELGSIRRDAETKRLDGDAVQEAVMRIEARRD 194
           W   EE+RI QE EL +YL RLI  + E+EL   +R+ E    DG  ++     IEA+ D
Sbjct: 125 WNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGH-IRAQQACIEAKHD 183

Query: 195 RSMAELNDLFVAIDERR---------------------------------------RKVG 215
           + MA++++LF  +DE+R                                       ++VG
Sbjct: 184 KYMADMDELFSQVDEKRKKRDIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVG 243

Query: 216 HFDPVTRVKLSADQLIPNFAMKEVVDNFLQENDWAYEY 253
           HF+PVTR  L+ +QLIPN AMKEV+D F+ EN W  +Y
Sbjct: 244 HFNPVTRSPLTQEQLIPNLAMKEVIDAFISENGWVEDY 281

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137

 Score =  149 bits (378), Expect = 6e-46
 Identities = 75/128 (58%), Positives = 94/128 (73%)

Query: 15  KELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKA 74
           +ELK++GNR F  R+Y EA  CY RAI +NP++  Y+TNRALCYLK++Q      DCR+A
Sbjct: 10  QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRA 69

Query: 75  LELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIACQLRIAKKKR 134
           LEL+   VKA FFLGQ   E+  YDEA+ +LQRAY L++EQ LN+GDDI   LRIAKKKR
Sbjct: 70  LELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKR 129

Query: 135 WAETEEKR 142
           W   EE+R
Sbjct: 130 WNSIEERR 137

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126

 Score =  113 bits (284), Expect = 5e-32
 Identities = 33/121 (27%), Positives = 52/121 (42%), Gaps = 1/121 (0%)

Query: 16  ELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKAL 75
           E + EG  YF    +  A+  YT  I + P     ++NRA    KL  +     DC KA+
Sbjct: 6   EARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAI 65

Query: 76  ELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSRE-QNLNYGDDIACQLRIAKKKR 134
           E +P+ V+A      A   +  Y  A++ L  A     E  N +   +I      A ++R
Sbjct: 66  EKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQR 125

Query: 135 W 135
           +
Sbjct: 126 F 126

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164

 Score =  112 bits (283), Expect = 2e-31
 Identities = 29/96 (30%), Positives = 47/96 (48%)

Query: 16  ELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKAL 75
           +LK EGN     ++Y +AI+ YT+A+   P  P Y +NRA  Y    Q+    +D   A 
Sbjct: 13  KLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELAT 72

Query: 76  ELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDL 111
            ++P   KA   LG A  ++  Y  A +  ++  + 
Sbjct: 73  VVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEA 108

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166

 Score =  108 bits (273), Expect = 6e-30
 Identities = 33/131 (25%), Positives = 59/131 (45%), Gaps = 5/131 (3%)

Query: 16  ELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKAL 75
           ELK + N YF  + YE AI  Y++AI  NP    Y+ NR+L YL+ + Y +   D  +A+
Sbjct: 15  ELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAI 74

Query: 76  ELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIACQLRIAKKKRW 135
           EL+   +K  +    +   +  +  A++  +    +          D   + +   K   
Sbjct: 75  ELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDK-----DAKMKYQECNKIVK 129

Query: 136 AETEEKRIAQE 146
            +  E+ IA +
Sbjct: 130 QKAFERAIAGD 140

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118

 Score =  106 bits (268), Expect = 1e-29
 Identities = 26/96 (27%), Positives = 47/96 (48%)

Query: 16  ELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKAL 75
           ELK++GN+   +   ++A+ CY+ AI  +P     ++NR+  Y K   Y    +D  K +
Sbjct: 6   ELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTV 65

Query: 76  ELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDL 111
           +L+P   K       AL  +N ++EA +  +     
Sbjct: 66  DLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKH 101

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score =  106 bits (268), Expect = 2e-29
 Identities = 36/96 (37%), Positives = 53/96 (55%)

Query: 16  ELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKAL 75
            LK EGN    +  +E A++ Y +AI  NP    YF NRA  Y KL  Y     DC +A+
Sbjct: 14  RLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAI 73

Query: 76  ELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDL 111
            ++P+  KA   +G AL  +N + EAV + ++A +L
Sbjct: 74  CIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALEL 109

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score = 52.2 bits (126), Expect = 6e-09
 Identities = 21/78 (26%), Positives = 31/78 (39%), Gaps = 3/78 (3%)

Query: 22  NR---YFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELE 78
           NR   Y  L  Y  A+    RAI  +P     +    L    L ++V      +KALEL+
Sbjct: 51  NRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELD 110

Query: 79  PSLVKAQFFLGQALHEIN 96
           P     +  L  A  ++ 
Sbjct: 111 PDNETYKSNLKIAELKLR 128

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126

 Score =  106 bits (267), Expect = 2e-29
 Identities = 25/96 (26%), Positives = 44/96 (45%)

Query: 16  ELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKAL 75
           E K++GN YF    Y  A+  Y  A+ ++P     ++NRA C  KL ++    DDC   +
Sbjct: 15  EEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCI 74

Query: 76  ELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDL 111
            L+   +K        L  +  + +A +  + A  +
Sbjct: 75  RLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQV 110

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126

 Score = 46.4 bits (111), Expect = 5e-07
 Identities = 11/63 (17%), Positives = 27/63 (42%), Gaps = 3/63 (4%)

Query: 21  GNR---YFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALEL 77
            NR      L +++ A++     I  +      +  +A C + ++++         AL++
Sbjct: 51  SNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQV 110

Query: 78  EPS 80
           +PS
Sbjct: 111 DPS 113

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133

 Score =  106 bits (268), Expect = 2e-29
 Identities = 33/96 (34%), Positives = 52/96 (54%)

Query: 16  ELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKAL 75
            +K++GN  F    Y +A+  YT AI +NP     ++NRA CY KL ++     DC + +
Sbjct: 18  MVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECI 77

Query: 76  ELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDL 111
           +LEP+ +K       AL  +  Y +A+   Q+A DL
Sbjct: 78  QLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDL 113

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133

 Score = 48.8 bits (117), Expect = 1e-07
 Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 3/68 (4%)

Query: 21  GNR---YFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALEL 77
            NR   Y  L +++ A+      I   P     +T +A     +K Y    D  +KAL+L
Sbjct: 54  SNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDL 113

Query: 78  EPSLVKAQ 85
           + S  +A 
Sbjct: 114 DSSCKEAA 121

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148

 Score =  106 bits (267), Expect = 3e-29
 Identities = 34/100 (34%), Positives = 50/100 (50%), Gaps = 3/100 (3%)

Query: 15  KELKDEGNRYFGLRQYEEAINCYTRAIIKNP---VIPSYFTNRALCYLKLKQYVHCCDDC 71
           ++L+ EGN  F    Y  A+  YT+A+  +           NRA C+LKL+ Y     + 
Sbjct: 29  EQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEA 88

Query: 72  RKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDL 111
            KA+E +   VKA +   QAL ++   D+AV  LQR   L
Sbjct: 89  SKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSL 128

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148

 Score = 40.8 bits (96), Expect = 7e-05
 Identities = 15/62 (24%), Positives = 26/62 (41%), Gaps = 3/62 (4%)

Query: 22  NR---YFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELE 78
           NR   +  L  Y++A    ++AI K+         R+    KL +      D ++ + LE
Sbjct: 70  NRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLE 129

Query: 79  PS 80
           P 
Sbjct: 130 PK 131

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111

 Score =  105 bits (263), Expect = 4e-29
 Identities = 23/99 (23%), Positives = 41/99 (41%), Gaps = 6/99 (6%)

Query: 16  ELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKAL 75
           + K++GN  F    Y EA++CY + I   P  P  ++N+A+  +KL +Y      C++ L
Sbjct: 6   KQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGL 65

Query: 76  ELEPSLVKA------QFFLGQALHEINHYDEAVKHLQRA 108
               +          Q+ L  A   +      V  +   
Sbjct: 66  RYTSTAEHVAIRSKLQYRLELAQGAVGSVQIPVVEVDEL 104

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131

 Score =  100 bits (250), Expect = 6e-27
 Identities = 29/135 (21%), Positives = 59/135 (43%), Gaps = 16/135 (11%)

Query: 16  ELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKAL 75
           + K+ GN  +  + ++ A+  Y +A   +P   +Y TN+A  Y +   Y  C + C KA+
Sbjct: 6   KEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAI 65

Query: 76  ELEP-------SLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIACQLR 128
           E+          + KA   +G +  +   Y +A+    ++    R        D+  + +
Sbjct: 66  EVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTP------DVLKKCQ 119

Query: 129 IAKKKRWAETEEKRI 143
            A+K      E++R+
Sbjct: 120 QAEKIL---KEQERL 131

>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C Length = 179

 Score = 97.4 bits (242), Expect = 3e-25
 Identities = 68/178 (38%), Positives = 98/178 (55%), Gaps = 44/178 (24%)

Query: 115 QNLNYGDDIACQLRIAKKKRWAETEEKRIAQEIELLTYLNRLITEDAEKELGSIRRDAET 174
           Q LN+GDDI   LRIAKKKRW   EEKRI+QE EL  YL++LI  + E+EL    + ++ 
Sbjct: 7   QRLNFGDDIPSALRIAKKKRWNSIEEKRISQENELHAYLSKLILAEKERELDDRVKQSDD 66

Query: 175 KRLDGDAVQEAVMRIEARRDRSMAELNDLFVAIDERR----------------------- 211
            +  GD     + +++++ D+ + ++++LF  +DE+R                       
Sbjct: 67  SQNGGD-----ISKMKSKHDKYLMDMDELFSQVDEKRKKREIPDYLCGKISFELMREPCI 121

Query: 212 ----------------RKVGHFDPVTRVKLSADQLIPNFAMKEVVDNFLQENDWAYEY 253
                           ++VGHFDPVTR  L+ DQLIPN AMKEV+D F+QEN W  +Y
Sbjct: 122 TPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNLAMKEVIDAFIQENGWVEDY 179

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162

 Score = 94.4 bits (235), Expect = 3e-24
 Identities = 28/146 (19%), Positives = 54/146 (36%), Gaps = 22/146 (15%)

Query: 15  KELKDEGNRYFGLRQYEEAINCYTRAII------------------KNPVIPSYFTNRAL 56
           + L+ +GN  F  + Y+EAI+ Y  A+                    +      + N + 
Sbjct: 12  EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQ 71

Query: 57  CYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQN 116
           CYL +       +   + L+ E +  KA F   +A       DEA + L+          
Sbjct: 72  CYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAA- 130

Query: 117 LNYGDDIACQLRIAKKKRWAETEEKR 142
                 +A +++I  ++R  +  + R
Sbjct: 131 ---ASVVAREMKIVTERRAEKKADSR 153

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336

 Score = 96.5 bits (240), Expect = 1e-23
 Identities = 38/194 (19%), Positives = 73/194 (37%), Gaps = 22/194 (11%)

Query: 15  KELKDEGNRYFGLRQYEEAINCYTRAI---------------IKNPVIPSYFTNRALCYL 59
             +K+ G  YF   +Y++A+  Y + +                   +  +   N A+C+L
Sbjct: 148 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHL 207

Query: 60  KLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNY 119
           KL+ +    + C KALEL+ +  K     G+A   +N ++ A    Q+   L        
Sbjct: 208 KLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNN---- 263

Query: 120 GDDIACQLRIAKKK--RWAETEEKRIAQEIELLTYLNRLITEDAEKELGSIRRDAETKRL 177
                 QL + +++  R    E+K  A   E L         +A         + + ++ 
Sbjct: 264 -KAAKTQLAVCQQRIRRQLAREKKLYANMFERLAEEENKAKAEASSGDHPTDTEMKEEQK 322

Query: 178 DGDAVQEAVMRIEA 191
              A  ++ +  EA
Sbjct: 323 SNTAGSQSQVETEA 336

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 90.4 bits (225), Expect = 3e-23
 Identities = 28/105 (26%), Positives = 46/105 (43%), Gaps = 7/105 (6%)

Query: 16  ELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKAL 75
             KD GN  +  + +E+A   Y +AI  +P   +++ N+A  Y + K++  C   C KA+
Sbjct: 10  AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAV 69

Query: 76  ELEPSL-------VKAQFFLGQALHEINHYDEAVKHLQRAYDLSR 113
           E+            KA    G A  + N    AV+   R+    R
Sbjct: 70  EVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFR 114

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198

 Score = 91.4 bits (227), Expect = 7e-23
 Identities = 36/144 (25%), Positives = 57/144 (39%), Gaps = 21/144 (14%)

Query: 15  KELKDEGNRYFGLRQYEEAINCYTRAII----------------KNPVIPSYFTNRALCY 58
            ++K+EGN +F   +  EAI  Y  A+                 K  +  S   N A CY
Sbjct: 39  FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCY 98

Query: 59  LKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLN 118
            K K Y    D   K L+++ + VKA + LG A       +EA ++L +A  L+      
Sbjct: 99  NKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNN--- 155

Query: 119 YGDDIACQLRIAKKKRWAETEEKR 142
              DI     +   K     ++ +
Sbjct: 156 --LDIRNSYELCVNKLKEARKKDK 177

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457

 Score = 92.1 bits (228), Expect = 1e-21
 Identities = 36/189 (19%), Positives = 82/189 (43%), Gaps = 28/189 (14%)

Query: 14  DKELKDEGNRYFGLRQYEEAINCYTRAI----------------IKNPVIPSYFTNRALC 57
              +K++G  YF   +Y +A+  Y + +                 ++ ++ ++  N A+C
Sbjct: 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAF-LNLAMC 326

Query: 58  YLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNL 117
           YLKL++Y    + C KAL L+ +  K  +  G+A   +N ++ A    ++  +++  QN 
Sbjct: 327 YLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQN- 384

Query: 118 NYGDDIACQLRIAKKKRWAETE-EKRIAQEIELLTYLNRLITEDAEKELGSIRRDAETKR 176
                   Q+ + +KK     E ++RI   +       +   +DA++E         ++ 
Sbjct: 385 ---KAARLQISMCQKKAKEHNERDRRIYANM-----FKKFAEQDAKEEANKAMGKKTSEG 436

Query: 177 LDGDAVQEA 185
           +  +   ++
Sbjct: 437 VTNEKGTDS 445

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477

 Score = 89.7 bits (223), Expect = 1e-20
 Identities = 28/93 (30%), Positives = 48/93 (51%)

Query: 16  ELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKAL 75
           ELK + N YF  + YE AI  Y++AI  NP    Y+ NR+L YL+ + Y +   D  +A+
Sbjct: 8   ELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAI 67

Query: 76  ELEPSLVKAQFFLGQALHEINHYDEAVKHLQRA 108
           EL+   +K  +    +   +  +  A++  +  
Sbjct: 68  ELDKKYIKGYYRRAASNMALGKFRAALRDYETV 100

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338

 Score = 87.8 bits (217), Expect = 2e-20
 Identities = 34/145 (23%), Positives = 53/145 (36%), Gaps = 22/145 (15%)

Query: 15  KELKDEGNRYFGLRQYEEAINCYTRAI-----------------IKNPVIPSYFTNRALC 57
              K +GN  F   + EEA+  Y  AI                 +   V      N A C
Sbjct: 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAAC 239

Query: 58  YLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNL 117
            +KLK+Y      C   L  E    KA F  G+A  E+   D A    ++A   + +   
Sbjct: 240 LIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDD-- 297

Query: 118 NYGDDIACQLRIAKKKRWAETEEKR 142
                I  +LR   ++  A  ++++
Sbjct: 298 ---KAIRRELRALAEQEKALYQKQK 319

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 85.5 bits (212), Expect = 2e-19
 Identities = 17/97 (17%), Positives = 38/97 (39%)

Query: 15  KELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKA 74
           ++  + G +     Q  +A++ +  A+  +P     +  RA  +L + +      D  K 
Sbjct: 27  EKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKV 86

Query: 75  LELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDL 111
           ++L+     A+   G  L +    DEA    ++    
Sbjct: 87  IQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS 123

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 80.5 bits (199), Expect = 1e-17
 Identities = 25/137 (18%), Positives = 46/137 (33%), Gaps = 9/137 (6%)

Query: 2   SKSHNFTTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSY----FTNRALC 57
            +            +L +         +Y +A + Y   +   P I  Y          C
Sbjct: 245 KRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHC 304

Query: 58  YLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNL 117
           + K ++ V     C + L++EP  V A     +A      YDEA++  + A + +     
Sbjct: 305 FSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNEND-- 362

Query: 118 NYGDDIACQLRIAKKKR 134
                I   L  A++  
Sbjct: 363 ---QQIREGLEKAQRLL 376

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 71.3 bits (175), Expect = 2e-14
 Identities = 14/94 (14%), Positives = 37/94 (39%)

Query: 15  KELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKA 74
           + L+ +    FG   Y  AI    + +            RA C++K  +      D + A
Sbjct: 144 QRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAA 203

Query: 75  LELEPSLVKAQFFLGQALHEINHYDEAVKHLQRA 108
            +L+    +A + +    +++  ++ ++  ++  
Sbjct: 204 SKLKNDNTEAFYKISTLYYQLGDHELSLSEVREC 237

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 58.2 bits (141), Expect = 4e-10
 Identities = 25/142 (17%), Positives = 50/142 (35%), Gaps = 15/142 (10%)

Query: 21  GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
            + +    +  EAI   +  +   P   +   +RA  YL  + Y     D   A E   +
Sbjct: 302 CHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNEN 361

Query: 81  LVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIACQLRIAKK-------- 132
             + +  L +A   +    +   +      L  ++N    + I    ++A +        
Sbjct: 362 DQQIREGLEKAQRLLKQSQKRDYY----KILGVKRNAKKQEIIKAYRKLALQWHPDNFQN 417

Query: 133 ---KRWAETEEKRIAQEIELLT 151
              K+ AE +   IA   E+L+
Sbjct: 418 EEEKKKAEKKFIDIAAAKEVLS 439

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 57.4 bits (139), Expect = 9e-10
 Identities = 15/107 (14%), Positives = 31/107 (28%), Gaps = 15/107 (14%)

Query: 21  GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
              +  + + + A+   T+ I       +    R    LK  +     DD +K L+  PS
Sbjct: 67  ATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPS 126

Query: 81  ---------------LVKAQFFLGQALHEINHYDEAVKHLQRAYDLS 112
                           ++              Y  A+  L +  ++ 
Sbjct: 127 ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC 173

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 56.6 bits (137), Expect = 2e-09
 Identities = 12/103 (11%), Positives = 27/103 (26%), Gaps = 12/103 (11%)

Query: 21  GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
              +    +  +AI+    A          F   +  Y +L  +     + R+ L+L+  
Sbjct: 184 AECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD 243

Query: 81  LVKAQFFL------------GQALHEINHYDEAVKHLQRAYDL 111
             +                  + L     Y +A    +     
Sbjct: 244 HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT 286

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 54.3 bits (131), Expect = 9e-09
 Identities = 14/103 (13%), Positives = 31/103 (30%), Gaps = 15/103 (14%)

Query: 21  GNRYFGLRQYEEAINCYTRAIIKNPVIPSY---------------FTNRALCYLKLKQYV 65
           G+      + +EA + + + +  NP                      ++AL       Y 
Sbjct: 101 GHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYT 160

Query: 66  HCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRA 108
                  K LE+     + +    +   +     +A+  L+ A
Sbjct: 161 AAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAA 203

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 83.4 bits (207), Expect = 2e-19
 Identities = 28/97 (28%), Positives = 43/97 (44%)

Query: 15  KELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKA 74
           +E + EG  YF    +  A+  YT  I + P     ++NRA    KL  +     DC KA
Sbjct: 140 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKA 199

Query: 75  LELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDL 111
           +E +P+ V+A      A   +  Y  A++ L  A   
Sbjct: 200 IEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTK 236

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 81.1 bits (201), Expect = 2e-18
 Identities = 21/93 (22%), Positives = 41/93 (44%), Gaps = 1/93 (1%)

Query: 16  ELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKAL 75
           + K EGN+++  RQ++EAI  Y +A   +  I +Y  NRA    +  +Y         A+
Sbjct: 7   KEKAEGNKFYKARQFDEAIEHYNKAWELHKDI-TYLNNRAAAEYEKGEYETAISTLNDAV 65

Query: 76  ELEPSLVKAQFFLGQALHEINHYDEAVKHLQRA 108
           E    +      + ++   I +    +  L++ 
Sbjct: 66  EQGREMRADYKVISKSFARIGNAYHKLGDLKKT 98

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 61.8 bits (151), Expect = 1e-11
 Identities = 11/88 (12%), Positives = 33/88 (37%), Gaps = 1/88 (1%)

Query: 21  GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
               +   +YE AI+    A+ +   + + +   +  + ++    H   D +K +E    
Sbjct: 45  AAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQK 104

Query: 81  LVKAQFFLGQALHEINHYDEAVKHLQRA 108
            +         L ++ + ++ +K  +  
Sbjct: 105 SLTE-HRTADILTKLRNAEKELKKAEAE 131

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 60.3 bits (147), Expect = 4e-11
 Identities = 9/88 (10%), Positives = 20/88 (22%), Gaps = 1/88 (1%)

Query: 21  GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
              +  +      +    + I       +     A    KL+              + P 
Sbjct: 79  SKSFARIGNAYHKLGDLKKTIEYYQKSLTEH-RTADILTKLRNAEKELKKAEAEAYVNPE 137

Query: 81  LVKAQFFLGQALHEINHYDEAVKHLQRA 108
             +     G+     + +  AVK     
Sbjct: 138 KAEEARLEGKEYFTKSDWPNAVKAYTEM 165

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 60.3 bits (147), Expect = 5e-11
 Identities = 12/88 (13%), Positives = 26/88 (29%)

Query: 21  GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
            +    LR  E+ +         NP            Y     + +      + ++  P 
Sbjct: 112 ADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE 171

Query: 81  LVKAQFFLGQALHEINHYDEAVKHLQRA 108
             +       AL ++  + EA+    +A
Sbjct: 172 DARGYSNRAAALAKLMSFPEAIADCNKA 199

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 58.7 bits (143), Expect = 2e-10
 Identities = 12/72 (16%), Positives = 23/72 (31%)

Query: 21  GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
                 L  + EAI    +AI K+P     +  +A   + +K+Y    +    A   +  
Sbjct: 180 AAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAE 239

Query: 81  LVKAQFFLGQAL 92
           +           
Sbjct: 240 VNNGSSAREIDQ 251

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 41.8 bits (99), Expect = 1e-04
 Identities = 7/44 (15%), Positives = 16/44 (36%)

Query: 21  GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQY 64
                 +++Y  A+     A  K+  + +  + R +  L  K  
Sbjct: 214 ATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 257

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 84.6 bits (210), Expect = 3e-19
 Identities = 17/94 (18%), Positives = 37/94 (39%)

Query: 15  KELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKA 74
           ++  + G +     Q  +A++ +  A+  +P     +  RA  +L + +      D  K 
Sbjct: 4   EKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKV 63

Query: 75  LELEPSLVKAQFFLGQALHEINHYDEAVKHLQRA 108
           + L+     A+   G  L +    DEA    ++ 
Sbjct: 64  IALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKV 97

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 82.3 bits (204), Expect = 2e-18
 Identities = 24/136 (17%), Positives = 46/136 (33%), Gaps = 9/136 (6%)

Query: 2   SKSHNFTTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSY----FTNRALC 57
            +            +L +         +Y +A + Y   +   P +  Y          C
Sbjct: 222 KRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHC 281

Query: 58  YLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNL 117
           + K ++ V     C + L++EP  V A     +A      YDEA++  + A + +     
Sbjct: 282 FSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNEND-- 339

Query: 118 NYGDDIACQLRIAKKK 133
                I   L  A++ 
Sbjct: 340 ---QQIREGLEKAQRL 352

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 73.5 bits (181), Expect = 2e-15
 Identities = 13/94 (13%), Positives = 36/94 (38%)

Query: 15  KELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKA 74
           + L+ +    F    Y  AI    + +            RA C++K  +      D + A
Sbjct: 121 QRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAA 180

Query: 75  LELEPSLVKAQFFLGQALHEINHYDEAVKHLQRA 108
            +L+    +A + +    +++  ++ ++  ++  
Sbjct: 181 SKLKSDNTEAFYKISTLYYQLGDHELSLSEVREC 214

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 60.4 bits (147), Expect = 8e-11
 Identities = 16/103 (15%), Positives = 31/103 (30%), Gaps = 15/103 (14%)

Query: 21  GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
              +  + + + A+   T+ I       +    R    LK  +     DD +K L+  PS
Sbjct: 44  ATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPS 103

Query: 81  LVKAQFFLGQ---------------ALHEINHYDEAVKHLQRA 108
             + +    Q                  +   Y  A+  L + 
Sbjct: 104 EQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKI 146

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 57.3 bits (139), Expect = 8e-10
 Identities = 12/100 (12%), Positives = 27/100 (27%), Gaps = 12/100 (12%)

Query: 21  GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
              +    +  +AI+    A          F   +  Y +L  +     + R+ L+L+  
Sbjct: 161 AECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD 220

Query: 81  LVKAQFFL------------GQALHEINHYDEAVKHLQRA 108
             +                  + L     Y +A    +  
Sbjct: 221 HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESV 260

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 57.3 bits (139), Expect = 8e-10
 Identities = 14/80 (17%), Positives = 28/80 (35%)

Query: 21  GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
            + +    +  EAI   +  +   P   +   +RA  YL  + Y     D   A E   +
Sbjct: 279 CHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNEN 338

Query: 81  LVKAQFFLGQALHEINHYDE 100
             + +  L +A   +    +
Sbjct: 339 DQQIREGLEKAQRLLKQSQK 358

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 55.7 bits (135), Expect = 3e-09
 Identities = 14/103 (13%), Positives = 31/103 (30%), Gaps = 15/103 (14%)

Query: 21  GNRYFGLRQYEEAINCYTRAIIKNP---------------VIPSYFTNRALCYLKLKQYV 65
           G+      + +EA + + + +  NP                      ++AL       Y 
Sbjct: 78  GHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYT 137

Query: 66  HCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRA 108
                  K LE+     + +    +   +     +A+  L+ A
Sbjct: 138 AAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAA 180

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 82.6 bits (204), Expect = 3e-18
 Identities = 30/200 (15%), Positives = 60/200 (30%), Gaps = 9/200 (4%)

Query: 21  GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
            +   G+           R +  +P  P             +++       ++A +  P 
Sbjct: 30  ADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPE 89

Query: 81  LVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIACQLRIAKKKRWAETEE 140
                 +LG AL +    + A     RA+ L  E+       +  + R+   +       
Sbjct: 90  HPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSA 149

Query: 141 K---RIAQEIELLTYLNRLITEDAEKELGSIRRDAETKRLDGDAVQEAVMRIEARRDRSM 197
           +    +AQ +  +     L  + +  E  +  R          A+  +V  +   R RS 
Sbjct: 150 QVRAAVAQGVGAVEPFAFLSEDASAAEQLACARTR------AQAIAASVRPLAPTRVRSK 203

Query: 198 AELNDLFVAIDERRRKVGHF 217
             L   FV+        G  
Sbjct: 204 GPLRVGFVSNGFGAHPTGLL 223

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 59.1 bits (143), Expect = 2e-10
 Identities = 15/80 (18%), Positives = 25/80 (31%)

Query: 29  QYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFL 88
                +     A+   P     +   A   L +          ++ L L P   +A   L
Sbjct: 4   DGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARL 63

Query: 89  GQALHEINHYDEAVKHLQRA 108
           G+       + EA   LQ+A
Sbjct: 64  GRVRWTQQRHAEAAVLLQQA 83

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 40.2 bits (94), Expect = 4e-04
 Identities = 9/41 (21%), Positives = 12/41 (29%)

Query: 71  CRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDL 111
            R A+   P    A   L  A   +         +QR   L
Sbjct: 12  LRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL 52

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 77.9 bits (192), Expect = 3e-18
 Identities = 13/95 (13%), Positives = 29/95 (30%)

Query: 21  GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
           G   +   ++++A   +    + +     YF     C   L  Y            ++ +
Sbjct: 25  GFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN 84

Query: 81  LVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQ 115
             +  F   +   ++   D A      A  L+  Q
Sbjct: 85  EPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQ 119

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 49.7 bits (119), Expect = 5e-08
 Identities = 14/71 (19%), Positives = 26/71 (36%)

Query: 21  GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
           G     L  YE+A+  Y+   + +   P +  + A C+L+L            A  L  +
Sbjct: 59  GACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAA 118

Query: 81  LVKAQFFLGQA 91
               +    +A
Sbjct: 119 QPAHEALAARA 129

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 40.9 bits (96), Expect = 7e-05
 Identities = 5/75 (6%), Positives = 18/75 (24%)

Query: 37  YTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEIN 96
                  +               +  ++       +    L+    +    LG     + 
Sbjct: 7   LAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLG 66

Query: 97  HYDEAVKHLQRAYDL 111
            Y++A++       +
Sbjct: 67  LYEQALQSYSYGALM 81

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 81.3 bits (201), Expect = 7e-18
 Identities = 25/93 (26%), Positives = 45/93 (48%), Gaps = 1/93 (1%)

Query: 16  ELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKAL 75
            LKD+GN++F  ++Y++AI  Y  A+      P +++N + CY+ +       +   KAL
Sbjct: 8   ALKDKGNQFFRNKKYDDAIKYYNWALELKED-PVFYSNLSACYVSVGDLKKVVEMSTKAL 66

Query: 76  ELEPSLVKAQFFLGQALHEINHYDEAVKHLQRA 108
           EL+P   K       A   +  + +A+  L   
Sbjct: 67  ELKPDYSKVLLRRASANEGLGKFADAMFDLSVL 99

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 75.9 bits (187), Expect = 5e-16
 Identities = 23/95 (24%), Positives = 36/95 (37%), Gaps = 1/95 (1%)

Query: 17  LKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALE 76
           L+  G   F       A     +AI   P + SY    AL            +   KAL+
Sbjct: 240 LEHTGIFKFLKNDPLGAHEDIKKAIELFPRVNSYI-YMALIMADRNDSTEYYNYFDKALK 298

Query: 77  LEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDL 111
           L+ +     +  GQ    + +YD+A K   +A +L
Sbjct: 299 LDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKEL 333

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 72.1 bits (177), Expect = 1e-14
 Identities = 18/88 (20%), Positives = 35/88 (39%)

Query: 21  GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
           G   F L+ Y++A   + +A   +P     +   A    +  ++  C     +A    P 
Sbjct: 311 GQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPE 370

Query: 81  LVKAQFFLGQALHEINHYDEAVKHLQRA 108
             +   F  + L + N +D+A+K    A
Sbjct: 371 APEVPNFFAEILTDKNDFDKALKQYDLA 398

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 70.5 bits (173), Expect = 4e-14
 Identities = 24/137 (17%), Positives = 45/137 (32%), Gaps = 12/137 (8%)

Query: 21  GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCD---------DC 71
                    +++A+  Y  AI     +   +   A    K                    
Sbjct: 379 AEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLL 438

Query: 72  RKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIACQLRIAK 131
            KA +L+P   +A+  L Q   +    DEA+   + + DL+R          A     A 
Sbjct: 439 EKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKL---QAITFAEAA 495

Query: 132 KKRWAETEEKRIAQEIE 148
           K +     +  +A++I+
Sbjct: 496 KVQQRIRSDPVLAKKIQ 512

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 60.9 bits (148), Expect = 6e-11
 Identities = 14/97 (14%), Positives = 31/97 (31%), Gaps = 9/97 (9%)

Query: 21  GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
               +   ++++    ++ A  K P  P      A        +         A+ELE  
Sbjct: 345 ACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENK 404

Query: 81  LVKAQFFLGQALHE---------INHYDEAVKHLQRA 108
           L      +   + +         + ++ EA   L++A
Sbjct: 405 LDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKA 441

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 55.9 bits (135), Expect = 3e-09
 Identities = 14/88 (15%), Positives = 31/88 (35%), Gaps = 1/88 (1%)

Query: 27  LRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQF 86
            R +EE ++           +     +  +        +   +D +KA+EL P  V +  
Sbjct: 216 ARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYI 274

Query: 87  FLGQALHEINHYDEAVKHLQRAYDLSRE 114
           ++   + + N   E   +  +A  L   
Sbjct: 275 YMALIMADRNDSTEYYNYFDKALKLDSN 302

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 80.2 bits (198), Expect = 2e-17
 Identities = 31/136 (22%), Positives = 55/136 (40%)

Query: 15  KELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKA 74
            +LK+ GN +F  + + EAI  Y  AI  +P  P +++N + CY+         +   KA
Sbjct: 26  VQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKA 85

Query: 75  LELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIACQLRIAKKKR 134
           LE++P   KA      A   + ++ +A+  L            +    +   L     K 
Sbjct: 86  LEIKPDHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKV 145

Query: 135 WAETEEKRIAQEIELL 150
             E   K   +  ++L
Sbjct: 146 LNENLSKDEGRGSQVL 161

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 72.1 bits (177), Expect = 1e-14
 Identities = 20/91 (21%), Positives = 32/91 (35%), Gaps = 1/91 (1%)

Query: 21  GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
           G  +F      +A      +I  +P   SY    AL     +         +KA++L P 
Sbjct: 250 GIFHFLKNNLLDAQVLLQESINLHPTPNSYI-FLALTLADKENSQEFFKFFQKAVDLNPE 308

Query: 81  LVKAQFFLGQALHEINHYDEAVKHLQRAYDL 111
                +  GQ    +  Y  A +  Q+A  L
Sbjct: 309 YPPTYYHRGQMYFILQDYKNAKEDFQKAQSL 339

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 70.9 bits (174), Expect = 2e-14
 Identities = 20/91 (21%), Positives = 34/91 (37%)

Query: 21  GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
           G  YF L+ Y+ A   + +A   NP     +   A    K  ++        +     P+
Sbjct: 317 GQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPT 376

Query: 81  LVKAQFFLGQALHEINHYDEAVKHLQRAYDL 111
           L +   F  + L +   +D A+K    A  L
Sbjct: 377 LPEVPTFFAEILTDRGDFDTAIKQYDIAKRL 407

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 70.9 bits (174), Expect = 3e-14
 Identities = 18/88 (20%), Positives = 32/88 (36%)

Query: 21  GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
                     +E    + +A+  NP  P  + +R   Y  L+ Y +  +D +KA  L P 
Sbjct: 283 ALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPE 342

Query: 81  LVKAQFFLGQALHEINHYDEAVKHLQRA 108
            V     L   L++   + E+       
Sbjct: 343 NVYPYIQLACLLYKQGKFTESEAFFNET 370

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 65.5 bits (160), Expect = 2e-12
 Identities = 24/146 (16%), Positives = 42/146 (28%), Gaps = 21/146 (14%)

Query: 21  GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCC------------ 68
                    ++ AI  Y  A     V             K                    
Sbjct: 385 AEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKF 444

Query: 69  ----DDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSRE-----QNLNY 119
                   KA EL+P   +A+  L Q   ++   DEA++  + +  L+R      Q   +
Sbjct: 445 NAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQATTF 504

Query: 120 GDDIACQLRIAKKKRWAETEEKRIAQ 145
            +    Q R+      +   E  +A+
Sbjct: 505 AEAAKIQKRLRADPIISAKMELTLAR 530

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 59.7 bits (145), Expect = 1e-10
 Identities = 15/104 (14%), Positives = 28/104 (26%), Gaps = 16/104 (15%)

Query: 21  GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
               +   ++ E+   +    +K P +P   T  A        +         A  LE  
Sbjct: 351 ACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEV 410

Query: 81  LVKA----------------QFFLGQALHEINHYDEAVKHLQRA 108
             K                 Q        +   ++ A+K L +A
Sbjct: 411 QEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKA 454

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 54.3 bits (131), Expect = 8e-09
 Identities = 12/99 (12%), Positives = 28/99 (28%), Gaps = 1/99 (1%)

Query: 10  NNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCD 69
           +   +  L            Y   ++  T                 + +      +    
Sbjct: 205 SATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQV 264

Query: 70  DCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRA 108
             ++++ L P+   +  FL   L +  +  E  K  Q+A
Sbjct: 265 LLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKA 302

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 52.4 bits (126), Expect = 4e-08
 Identities = 10/87 (11%), Positives = 28/87 (32%), Gaps = 4/87 (4%)

Query: 29  QYEEAINCYTRAIIKNP-VIPSYFT---NRALCYLKLKQYVHCCDDCRKALELEPSLVKA 84
            +        +    +P    +Y     NR   +   K +       + A+EL+P+    
Sbjct: 2   SHMNGEPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVF 61

Query: 85  QFFLGQALHEINHYDEAVKHLQRAYDL 111
              +          ++ ++   +A ++
Sbjct: 62  YSNISACYISTGDLEKVIEFTTKALEI 88

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 49.3 bits (118), Expect = 4e-07
 Identities = 15/108 (13%), Positives = 29/108 (26%), Gaps = 2/108 (1%)

Query: 3   KSHNFTTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAI--IKNPVIPSYFTNRALCYLK 60
            S+    +     +   E +       Y+ A    + A+  + +     Y     L    
Sbjct: 162 PSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKS 221

Query: 61  LKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRA 108
              Y            L  +   A  + G      N+  +A   LQ +
Sbjct: 222 TDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQES 269

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 75.2 bits (185), Expect = 3e-17
 Identities = 17/102 (16%), Positives = 33/102 (32%)

Query: 16  ELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKAL 75
           ++      ++   + EEA   +    I +     Y    A  Y   +Q+    D    A 
Sbjct: 38  DIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAF 97

Query: 76  ELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNL 117
            L  +     F  GQ    +    +A +  +     S ++ L
Sbjct: 98  ALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEKL 139

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 75.3 bits (185), Expect = 3e-17
 Identities = 19/125 (15%), Positives = 37/125 (29%), Gaps = 2/125 (1%)

Query: 17  LKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALE 76
           L       +    YE+A   +    + +     +F     C   + QY            
Sbjct: 24  LYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAV 83

Query: 77  LEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSRE--QNLNYGDDIACQLRIAKKKR 134
           ++    +  F   + L +     EA   L  A +L     +       ++  L   K K+
Sbjct: 84  MDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVSSMLEAIKLKK 143

Query: 135 WAETE 139
             + E
Sbjct: 144 EMKHE 148

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 43.0 bits (101), Expect = 1e-05
 Identities = 16/145 (11%), Positives = 33/145 (22%), Gaps = 2/145 (1%)

Query: 29  QYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFL 88
                          +        + A    +   Y       +    L+    +    L
Sbjct: 2   PLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGL 61

Query: 89  GQALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIACQLRIAKKKRWAETEEKRIAQEIE 148
           G     +  YD A+        +   +         C L+  +            AQE+ 
Sbjct: 62  GACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFL--AQELI 119

Query: 149 LLTYLNRLITEDAEKELGSIRRDAE 173
                   ++      L +I+   E
Sbjct: 120 ANXPEFXELSTRVSSMLEAIKLKKE 144

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Length = 370

 Score = 75.5 bits (186), Expect = 5e-16
 Identities = 36/146 (24%), Positives = 67/146 (45%), Gaps = 21/146 (14%)

Query: 15  KELKDEGNRYFGLRQYEEAINCYTRAI---------IKNPVIPSY-------FTNRALCY 58
           ++LK+ GN +F  + +E AI  YT+ +          ++               N   C 
Sbjct: 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACK 283

Query: 59  LKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLN 118
           LK+  +    D C +ALE++PS  KA +   Q    +  YD+A+  L++A +++ E    
Sbjct: 284 LKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDK-- 341

Query: 119 YGDDIACQLRIAKKKRWAETEEKRIA 144
               I  +L   K+K  A+ ++++ A
Sbjct: 342 ---AIQAELLKVKQKIKAQKDKEKAA 364

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 74.5 bits (183), Expect = 2e-15
 Identities = 16/91 (17%), Positives = 33/91 (36%)

Query: 21  GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
           G  Y  + +  EA   ++++   +P     +   A  +    ++         A  L   
Sbjct: 380 GIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQG 439

Query: 81  LVKAQFFLGQALHEINHYDEAVKHLQRAYDL 111
                 FLG    ++ +   A ++LQ +Y L
Sbjct: 440 THLPYLFLGMQHMQLGNILLANEYLQSSYAL 470

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 66.4 bits (162), Expect = 1e-12
 Identities = 18/121 (14%), Positives = 40/121 (33%), Gaps = 4/121 (3%)

Query: 21  GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
            + +    ++++AI+ YT A          +    + +++L   +   +  + +  L   
Sbjct: 414 AHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQY 473

Query: 81  LVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIACQLRIA----KKKRWA 136
                  LG      +    A+ H Q A  L ++   N     A    +     K K + 
Sbjct: 474 DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYD 533

Query: 137 E 137
            
Sbjct: 534 A 534

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 65.6 bits (160), Expect = 2e-12
 Identities = 18/98 (18%), Positives = 29/98 (29%), Gaps = 7/98 (7%)

Query: 21  GNRYFGLRQYEEAINCYTRAI-------IKNPVIPSYFTNRALCYLKLKQYVHCCDDCRK 73
           G   F     + AIN +  A+              + + N    Y KLK Y    D   +
Sbjct: 482 GVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQ 541

Query: 74  ALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDL 111
            L L  +       +            A+ HL  +  +
Sbjct: 542 GLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAI 579

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 62.9 bits (153), Expect = 1e-11
 Identities = 8/88 (9%), Positives = 27/88 (30%)

Query: 21  GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
            +  F   ++ + +   T+ +  +P     +        +  +           ++  P 
Sbjct: 312 ADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPE 371

Query: 81  LVKAQFFLGQALHEINHYDEAVKHLQRA 108
                  +G     +N   EA ++  ++
Sbjct: 372 KAVTWLAVGIYYLCVNKISEARRYFSKS 399

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 60.6 bits (147), Expect = 8e-11
 Identities = 15/98 (15%), Positives = 25/98 (25%), Gaps = 7/98 (7%)

Query: 21  GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELE-- 78
           G ++  L     A      +       P       +            +  + AL L   
Sbjct: 448 GMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKK 507

Query: 79  -----PSLVKAQFFLGQALHEINHYDEAVKHLQRAYDL 111
                         LG A  ++  YD A+  L +   L
Sbjct: 508 TQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLL 545

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 57.5 bits (139), Expect = 9e-10
 Identities = 19/74 (25%), Positives = 34/74 (45%)

Query: 21  GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
           G+ Y  L+ Y+ AI+   + ++ +    +  T  AL YL  K          ++L + P+
Sbjct: 523 GHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPN 582

Query: 81  LVKAQFFLGQALHE 94
            + A   L +AL E
Sbjct: 583 EIMASDLLKRALEE 596

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 56.8 bits (137), Expect = 2e-09
 Identities = 13/100 (13%), Positives = 25/100 (25%)

Query: 15  KELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKA 74
           + L                   Y  +I            +A       +++       K 
Sbjct: 272 RSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKI 331

Query: 75  LELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSRE 114
           LE++P  +        +LHE    ++         D   E
Sbjct: 332 LEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPE 371

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 44.4 bits (105), Expect = 2e-05
 Identities = 16/128 (12%), Positives = 33/128 (25%), Gaps = 37/128 (28%)

Query: 21  GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTN--------------------------- 53
           G  Y  L  ++ A  CY  A++ +      F                             
Sbjct: 207 GQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKE 266

Query: 54  -----RALCYLKLKQYVH-----CCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVK 103
                R+L  LKL +  H       +D   ++                L   + + + + 
Sbjct: 267 DAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLA 326

Query: 104 HLQRAYDL 111
              +  ++
Sbjct: 327 ITTKILEI 334

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 44.1 bits (104), Expect = 3e-05
 Identities = 13/106 (12%), Positives = 29/106 (27%), Gaps = 2/106 (1%)

Query: 13  SDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCR 72
            +  L+   +     +QY+ A     + +         F   A  Y     Y        
Sbjct: 83  REDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAF-WLAQVYCCTGDYARAKCLLT 141

Query: 73  KALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLN 118
           K      S    ++     L ++  +  A+  L       +++   
Sbjct: 142 KEDLYNRSS-ACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNA 186

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 42.9 bits (101), Expect = 6e-05
 Identities = 15/107 (14%), Positives = 30/107 (28%), Gaps = 17/107 (15%)

Query: 21  GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
              Y     Y  A    T+  + N      +   A C +KL  +    +   +       
Sbjct: 124 AQVYCCTGDYARAKCLLTKEDLYNRSSACRY-LAAFCLVKLYDWQGALNLLGETNPFRKD 182

Query: 81  LVKAQ----------------FFLGQALHEINHYDEAVKHLQRAYDL 111
              A                 +  GQ    ++++D A +  + A  +
Sbjct: 183 EKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMV 229

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 73.3 bits (179), Expect = 5e-15
 Identities = 20/138 (14%), Positives = 47/138 (34%)

Query: 21  GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
            +      + +EA+  Y  AI  +P     ++N      +++          +A+++ P+
Sbjct: 50  ASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPA 109

Query: 81  LVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIACQLRIAKKKRWAETEE 140
              A   L     +  +  EA+   + A  L  +    Y +   C   +     + E  +
Sbjct: 110 FADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMK 169

Query: 141 KRIAQEIELLTYLNRLIT 158
           K ++   + L        
Sbjct: 170 KLVSIVADQLEKNRLPSV 187

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 66.4 bits (161), Expect = 1e-12
 Identities = 18/91 (19%), Positives = 35/91 (38%)

Query: 21  GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
            N        EEA+  Y +A+   P   +  +N A    +  +        ++A+ + P+
Sbjct: 16  ANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT 75

Query: 81  LVKAQFFLGQALHEINHYDEAVKHLQRAYDL 111
              A   +G  L E+     A++   RA  +
Sbjct: 76  FADAYSNMGNTLKEMQDVQGALQCYTRAIQI 106

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 45.6 bits (107), Expect = 9e-06
 Identities = 12/89 (13%), Positives = 27/89 (30%), Gaps = 1/89 (1%)

Query: 21  GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
            + +       EAI  Y  A+   P  P  + N A C   +  +    +  +K + +   
Sbjct: 118 ASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVAD 177

Query: 81  LVKAQFFLGQALHEINHYDEAVKHLQRAY 109
            ++            +         ++A 
Sbjct: 178 QLEKNRL-PSVHPHHSMLYPLSHGFRKAI 205

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 45.6 bits (107), Expect = 9e-06
 Identities = 16/68 (23%), Positives = 22/68 (32%)

Query: 44  NPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVK 103
            P       N A    +           RKALE+ P    A   L   L +     EA+ 
Sbjct: 5   CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALM 64

Query: 104 HLQRAYDL 111
           H + A  +
Sbjct: 65  HYKEAIRI 72

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 71.8 bits (177), Expect = 1e-14
 Identities = 22/88 (25%), Positives = 31/88 (35%)

Query: 21  GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
           GN Y    Q +EAI  Y  A+   P     + N A   +              AL+  P 
Sbjct: 74  GNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD 133

Query: 81  LVKAQFFLGQALHEINHYDEAVKHLQRA 108
           L   +  LG  L  +   +EA     +A
Sbjct: 134 LYCVRSDLGNLLKALGRLEEAKACYLKA 161

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 69.9 bits (172), Expect = 4e-14
 Identities = 25/88 (28%), Positives = 34/88 (38%)

Query: 21  GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
           GN     R ++ A+  Y RA+  +P       N A  Y +        D  R+A+EL+P 
Sbjct: 210 GNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH 269

Query: 81  LVKAQFFLGQALHEINHYDEAVKHLQRA 108
              A   L  AL E     EA      A
Sbjct: 270 FPDAYCNLANALKEKGSVAEAEDCYNTA 297

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 69.5 bits (171), Expect = 7e-14
 Identities = 22/88 (25%), Positives = 29/88 (32%)

Query: 21  GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
            N         EA +CY  A+   P       N A    +           RKALE+ P 
Sbjct: 278 ANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPE 337

Query: 81  LVKAQFFLGQALHEINHYDEAVKHLQRA 108
              A   L   L +     EA+ H + A
Sbjct: 338 FAAAHSNLASVLQQQGKLQEALMHYKEA 365

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 68.3 bits (168), Expect = 1e-13
 Identities = 15/88 (17%), Positives = 31/88 (35%)

Query: 21  GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
            +R +    +E A     +   + P         +  + + ++          A++  P 
Sbjct: 6   AHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL 65

Query: 81  LVKAQFFLGQALHEINHYDEAVKHLQRA 108
           L +A   LG    E     EA++H + A
Sbjct: 66  LAEAYSNLGNVYKERGQLQEAIEHYRHA 93

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 68.0 bits (167), Expect = 2e-13
 Identities = 26/88 (29%), Positives = 37/88 (42%)

Query: 21  GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
           GN    L + EEA  CY +AI   P     ++N    +    +         KA+ L+P+
Sbjct: 142 GNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN 201

Query: 81  LVKAQFFLGQALHEINHYDEAVKHLQRA 108
            + A   LG  L E   +D AV    RA
Sbjct: 202 FLDAYINLGNVLKEARIFDRAVAAYLRA 229

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 57.6 bits (140), Expect = 7e-10
 Identities = 15/75 (20%), Positives = 29/75 (38%)

Query: 21  GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
            N        EEA+  Y +A+   P   +  +N A    +  +        ++A+ + P+
Sbjct: 312 ANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT 371

Query: 81  LVKAQFFLGQALHEI 95
              A   +G  L E+
Sbjct: 372 FADAYSNMGNTLKEM 386

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 44.5 bits (106), Expect = 2e-05
 Identities = 7/56 (12%), Positives = 12/56 (21%)

Query: 53  NRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRA 108
             A    +   +      C +    EP        L     +    D +      A
Sbjct: 4   ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLA 59

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 70.8 bits (174), Expect = 1e-14
 Identities = 20/103 (19%), Positives = 37/103 (35%), Gaps = 3/103 (2%)

Query: 12  LSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQY---VHCC 68
           ++D       +  F    Y EAI  + +   K    P  +  RA+CY +L +Y       
Sbjct: 1   MNDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDI 60

Query: 69  DDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDL 111
           +     +    +      + G+ L +      A++  Q A D 
Sbjct: 61  ETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDR 103

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 69.2 bits (170), Expect = 4e-14
 Identities = 14/88 (15%), Positives = 26/88 (29%)

Query: 21  GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
           G       Q   AI  Y  A+ ++      +      +     +        K +    +
Sbjct: 81  GKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTT 140

Query: 81  LVKAQFFLGQALHEINHYDEAVKHLQRA 108
             K  + LGQA +    Y +A     + 
Sbjct: 141 DPKVFYELGQAYYYNKEYVKADSSFVKV 168

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 65.8 bits (161), Expect = 6e-13
 Identities = 19/107 (17%), Positives = 38/107 (35%), Gaps = 3/107 (2%)

Query: 21  GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
           G+ ++    +  AI    + I      P  F      Y   K+YV       K LEL+P+
Sbjct: 115 GSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPN 174

Query: 81  LVKAQFFLGQALHEINH---YDEAVKHLQRAYDLSREQNLNYGDDIA 124
           +     +  +A    +       A  + ++  ++       Y D++ 
Sbjct: 175 IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELI 221

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 64.6 bits (158), Expect = 2e-12
 Identities = 11/94 (11%), Positives = 33/94 (35%), Gaps = 3/94 (3%)

Query: 21  GNRYFGLRQYEEAI---NCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALEL 77
              Y+ L +Y+ A      Y   +       + F       +K  Q        + A++ 
Sbjct: 44  AVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDR 103

Query: 78  EPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDL 111
           + + +     +G   +   ++  A++++++    
Sbjct: 104 DTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP 137

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 50.7 bits (122), Expect = 9e-08
 Identities = 14/80 (17%), Positives = 23/80 (28%), Gaps = 8/80 (10%)

Query: 27  LRQYEEAINCYTRAI--------IKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELE 78
             +   A   Y + I             +       A  Y   +  V      +  L L+
Sbjct: 192 DTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALD 251

Query: 79  PSLVKAQFFLGQALHEINHY 98
           P+  KA   L   L   +H+
Sbjct: 252 PTNKKAIDGLKMKLEHHHHH 271

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 69.9 bits (172), Expect = 1e-14
 Identities = 21/88 (23%), Positives = 35/88 (39%)

Query: 21  GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
           GN Y     Y+EA + + +A+         F       +KL+Q        ++A+EL  +
Sbjct: 98  GNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN 157

Query: 81  LVKAQFFLGQALHEINHYDEAVKHLQRA 108
             +A+F  G  L      DEA+      
Sbjct: 158 DTEARFQFGMCLANEGMLDEALSQFAAV 185

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 67.9 bits (167), Expect = 7e-14
 Identities = 22/88 (25%), Positives = 33/88 (37%)

Query: 21  GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
             R      YE+A   +T+AI +N      + N A     + +         KALEL+ S
Sbjct: 30  MGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSS 89

Query: 81  LVKAQFFLGQALHEINHYDEAVKHLQRA 108
              A +  G        Y EA    ++A
Sbjct: 90  AATAYYGAGNVYVVKEMYKEAKDMFEKA 117

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 66.4 bits (163), Expect = 2e-13
 Identities = 15/88 (17%), Positives = 27/88 (30%)

Query: 21  GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
           G     L Q + A+    RA+  N           +C                  E +P 
Sbjct: 132 GTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPG 191

Query: 81  LVKAQFFLGQALHEINHYDEAVKHLQRA 108
              A +  G       + ++A++ L +A
Sbjct: 192 HADAFYNAGVTYAYKENREKALEMLDKA 219

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 56.0 bits (136), Expect = 1e-09
 Identities = 13/78 (16%), Positives = 29/78 (37%)

Query: 21  GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
           G         +EA++ +     ++P     F N  + Y   +      +   KA++++P 
Sbjct: 166 GMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPD 225

Query: 81  LVKAQFFLGQALHEINHY 98
            + A        H  +H+
Sbjct: 226 HMLALHAKKLLGHHHHHH 243

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 49.1 bits (118), Expect = 3e-07
 Identities = 9/80 (11%), Positives = 20/80 (25%), Gaps = 3/80 (3%)

Query: 29  QYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFL 88
            +  +     R      +       +     +   Y    +   KA+E            
Sbjct: 7   HHHHSSGLVPRGSHMASM---TGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINF 63

Query: 89  GQALHEINHYDEAVKHLQRA 108
              L  +N  + A+    +A
Sbjct: 64  ANLLSSVNELERALAFYDKA 83

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 67.7 bits (166), Expect = 2e-13
 Identities = 11/92 (11%), Positives = 26/92 (28%), Gaps = 1/92 (1%)

Query: 21  GNRYFGL-RQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEP 79
           G  Y  +  + E A    ++A          +      +    ++         A +L  
Sbjct: 97  GCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMK 156

Query: 80  SLVKAQFFLGQALHEINHYDEAVKHLQRAYDL 111
                  ++G      N+   A +   +A  +
Sbjct: 157 GCHLPMLYIGLEYGLTNNSKLAERFFSQALSI 188

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 66.2 bits (162), Expect = 7e-13
 Identities = 24/103 (23%), Positives = 39/103 (37%), Gaps = 9/103 (8%)

Query: 21  GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFT---------NRALCYLKLKQYVHCCDDC 71
           G   F   +++ A   +  A+ K   I +  T         N      KLK+Y    D  
Sbjct: 200 GVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYH 259

Query: 72  RKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSRE 114
           R+AL L P        +G     + +++ AV +   A  L R+
Sbjct: 260 RQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRD 302

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 65.4 bits (160), Expect = 1e-12
 Identities = 14/102 (13%), Positives = 28/102 (27%)

Query: 21  GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
           G+ +    ++++A+  Y  A               L Y              +AL + P 
Sbjct: 132 GHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPE 191

Query: 81  LVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNYGDD 122
                  +G    +   +  A K    A +  +        D
Sbjct: 192 DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVD 233

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 63.1 bits (154), Expect = 8e-12
 Identities = 16/81 (19%), Positives = 33/81 (40%)

Query: 21  GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
           G+    L++Y EA++ + +A++  P   S ++     +  +  + +  D    AL L   
Sbjct: 243 GHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRD 302

Query: 81  LVKAQFFLGQALHEINHYDEA 101
              +   LG  +       EA
Sbjct: 303 DTFSVTMLGHCIEMYIGDSEA 323

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 56.1 bits (136), Expect = 2e-09
 Identities = 14/89 (15%), Positives = 34/89 (38%), Gaps = 1/89 (1%)

Query: 21  GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
             R++    ++      +  + K+P   S         ++L +         K ++L PS
Sbjct: 29  AERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPS 88

Query: 81  LVKAQFFLGQALHEI-NHYDEAVKHLQRA 108
              + F +G     + +  + A ++L +A
Sbjct: 89  NPVSWFAVGCYYLMVGHKNEHARRYLSKA 117

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 44.6 bits (106), Expect = 1e-05
 Identities = 10/84 (11%), Positives = 22/84 (26%)

Query: 31  EEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQ 90
           + +      ++           + A  +     +  C       +E +P           
Sbjct: 5   KPSETVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIG 64

Query: 91  ALHEINHYDEAVKHLQRAYDLSRE 114
            L E+N  +E      +  DL   
Sbjct: 65  TLVELNKANELFYLSHKLVDLYPS 88

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 66.6 bits (163), Expect = 4e-13
 Identities = 20/91 (21%), Positives = 32/91 (35%)

Query: 21  GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
           G  Y  L     A N +++A+   P +P  F    +   +   +    +     LEL+P+
Sbjct: 50  GVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT 109

Query: 81  LVKAQFFLGQALHEINHYDEAVKHLQRAYDL 111
              A    G AL+       A   L   Y  
Sbjct: 110 YNYAHLNRGIALYYGGRDKLAQDDLLAFYQD 140

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 55.4 bits (134), Expect = 2e-09
 Identities = 14/92 (15%), Positives = 30/92 (32%), Gaps = 4/92 (4%)

Query: 21  GNRYFGLRQYEEAINCYTRAI----IKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALE 76
                   Q E  +    + +    + +         R + Y  L       +D  +AL 
Sbjct: 12  AVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALA 71

Query: 77  LEPSLVKAQFFLGQALHEINHYDEAVKHLQRA 108
           + P + +   +LG  L +  ++D A +     
Sbjct: 72  IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSV 103

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 50.4 bits (121), Expect = 1e-07
 Identities = 7/79 (8%), Positives = 15/79 (18%)

Query: 29  QYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFL 88
             E      T        +          YL L          + A+           + 
Sbjct: 196 LMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYA 255

Query: 89  GQALHEINHYDEAVKHLQR 107
              L  +    + +    +
Sbjct: 256 LLELSLLGQDQDDLAESDQ 274

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 48.8 bits (117), Expect = 4e-07
 Identities = 12/91 (13%), Positives = 25/91 (27%), Gaps = 4/91 (4%)

Query: 21  GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQY---VHCCDDCRKALEL 77
           G   +   + + A +        +P  P       L   KL +            K+ + 
Sbjct: 118 GIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKE 177

Query: 78  EPSLVKAQFFLGQALHEINHYDEAVKHLQRA 108
           +      +F+LG  + E    +         
Sbjct: 178 QWGWNIVEFYLG-NISEQTLMERLKADATDN 207

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 48.5 bits (116), Expect = 5e-07
 Identities = 12/92 (13%), Positives = 26/92 (28%), Gaps = 5/92 (5%)

Query: 22  NRYFGLRQ--YEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQ---YVHCCDDCRKALE 76
             Y   ++   ++A     +   K+      +         + +         D      
Sbjct: 150 WLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTS 209

Query: 77  LEPSLVKAQFFLGQALHEINHYDEAVKHLQRA 108
           L   L +  F+LG+    +   D A    + A
Sbjct: 210 LAEHLSETNFYLGKYYLSLGDLDSATALFKLA 241

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 64.8 bits (159), Expect = 5e-13
 Identities = 16/88 (18%), Positives = 31/88 (35%)

Query: 21  GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
           G  +    +Y +A+    +    +        +  + Y+K        +   ++L   P 
Sbjct: 15  GISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPD 74

Query: 81  LVKAQFFLGQALHEINHYDEAVKHLQRA 108
            VK    LG    ++  YD AV  L + 
Sbjct: 75  NVKVATVLGLTYVQVQKYDLAVPLLIKV 102

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 63.2 bits (155), Expect = 1e-12
 Identities = 20/88 (22%), Positives = 33/88 (37%)

Query: 21  GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
           G  Y      +       R++   P      T   L Y+++++Y        K  E  P 
Sbjct: 49  GIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPI 108

Query: 81  LVKAQFFLGQALHEINHYDEAVKHLQRA 108
               +F LG AL  +  +DEA+   + A
Sbjct: 109 NFNVRFRLGVALDNLGRFDEAIDSFKIA 136

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 62.5 bits (153), Expect = 3e-12
 Identities = 17/88 (19%), Positives = 39/88 (44%)

Query: 21  GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
           G  Y  +++Y+ A+    +    NP+  +      +    L ++    D  + AL L P+
Sbjct: 83  GLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPN 142

Query: 81  LVKAQFFLGQALHEINHYDEAVKHLQRA 108
             K    +  +  ++  ++EA+ H ++A
Sbjct: 143 EGKVHRAIAFSYEQMGRHEEALPHFKKA 170

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 45.1 bits (108), Expect = 4e-06
 Identities = 10/65 (15%), Positives = 25/65 (38%)

Query: 44  NPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVK 103
           + +   Y+ ++ + + K  +Y        +  + +   V     LG A  +    D   +
Sbjct: 4   DDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTE 63

Query: 104 HLQRA 108
            L+R+
Sbjct: 64  LLERS 68

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 62.5 bits (153), Expect = 6e-13
 Identities = 16/96 (16%), Positives = 32/96 (33%), Gaps = 8/96 (8%)

Query: 21  GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQY---VHCCDDCRKALEL 77
           G   +    Y E+I+ + +AI  +P    Y+  +      L++Y   V C +     + +
Sbjct: 13  GVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYN---YVINV 69

Query: 78  EP--SLVKAQFFLGQALHEINHYDEAVKHLQRAYDL 111
                          AL  I   +   +  +    L
Sbjct: 70  IEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKL 105

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 64.4 bits (157), Expect = 9e-13
 Identities = 20/98 (20%), Positives = 37/98 (37%), Gaps = 3/98 (3%)

Query: 19  DEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELE 78
           +EG      + ++ A++ ++     +  I   F N    Y  LK          +++  +
Sbjct: 11  NEGVLAADKKDWKGALDAFSAVQDPHSRI--CF-NIGCMYTILKNMTEAEKAFTRSINRD 67

Query: 79  PSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQN 116
             L  A F  G   ++   YD A+K L+ A    R   
Sbjct: 68  KHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQ 105

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 57.8 bits (140), Expect = 2e-10
 Identities = 19/118 (16%), Positives = 41/118 (34%), Gaps = 16/118 (13%)

Query: 21  GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
           G  Y  L+   EA   +TR+I ++  +   +  R + Y + ++Y     D ++AL     
Sbjct: 44  GCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRG 103

Query: 81  ----------------LVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNYGDD 122
                             +  + +     +   + +A + L  A  +  E   +  D 
Sbjct: 104 NQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDK 161

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 62.0 bits (151), Expect = 9e-13
 Identities = 11/86 (12%), Positives = 27/86 (31%)

Query: 31  EEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQ 90
           +         + +              Y + +Q+       R AL+ +P+   A  +LG+
Sbjct: 2   QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGK 61

Query: 91  ALHEINHYDEAVKHLQRAYDLSREQN 116
            L        A +  +     ++ + 
Sbjct: 62  TLQGQGDRAGARQAWESGLAAAQSRG 87

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 62.4 bits (153), Expect = 1e-12
 Identities = 30/88 (34%), Positives = 47/88 (53%)

Query: 21  GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
           GN Y+    Y+EAI  Y +A+  +P     + N    Y K   Y    +  +KALEL+P 
Sbjct: 8   GNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 67

Query: 81  LVKAQFFLGQALHEINHYDEAVKHLQRA 108
             +A + LG A ++   YDEA+++ Q+A
Sbjct: 68  SAEAWYNLGNAYYKQGDYDEAIEYYQKA 95

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 62.4 bits (153), Expect = 1e-12
 Identities = 30/88 (34%), Positives = 47/88 (53%)

Query: 21  GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
           GN Y+    Y+EAI  Y +A+  +P     + N    Y K   Y    +  +KALEL+P 
Sbjct: 42  GNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 101

Query: 81  LVKAQFFLGQALHEINHYDEAVKHLQRA 108
             +A + LG A ++   YDEA+++ Q+A
Sbjct: 102 SAEAWYNLGNAYYKQGDYDEAIEYYQKA 129

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 40.4 bits (96), Expect = 8e-05
 Identities = 20/56 (35%), Positives = 31/56 (55%)

Query: 53  NRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRA 108
           N    Y K   Y    +  +KALEL+P   +A + LG A ++   YDEA+++ Q+A
Sbjct: 6   NLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKA 61

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 61.7 bits (150), Expect = 1e-12
 Identities = 17/104 (16%), Positives = 34/104 (32%), Gaps = 2/104 (1%)

Query: 7   FTTNN--LSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQY 64
           F  NN  +  +   +EG     L    EA   +     K P     + +  L   + ++ 
Sbjct: 8   FEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKD 67

Query: 65  VHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRA 108
                    A  L+P  +     L  +    ++ + A+  L+  
Sbjct: 68  GLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAW 111

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 42.4 bits (100), Expect = 1e-05
 Identities = 9/59 (15%), Positives = 16/59 (27%)

Query: 21  GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEP 79
           G       +   AI     A + +P   +     A+ +             R  L  +P
Sbjct: 58  GLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQP 116

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 41.3 bits (97), Expect = 4e-05
 Identities = 14/59 (23%), Positives = 17/59 (28%)

Query: 53  NRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDL 111
              L  LKL              + EP   +A   LG    E      A+  L  A  L
Sbjct: 22  EEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARML 80

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 65.0 bits (159), Expect = 2e-12
 Identities = 19/88 (21%), Positives = 32/88 (36%)

Query: 21  GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
           G  Y     Y+ A     RA+   P     +           +     D   +AL++ P 
Sbjct: 179 GVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPG 238

Query: 81  LVKAQFFLGQALHEINHYDEAVKHLQRA 108
            V+  + +  +   ++ YD A K L RA
Sbjct: 239 YVRVMYNMAVSYSNMSQYDLAAKQLVRA 266

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 63.1 bits (154), Expect = 9e-12
 Identities = 16/108 (14%), Positives = 34/108 (31%), Gaps = 2/108 (1%)

Query: 3   KSHNFTTNN--LSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLK 60
             + F  NN  +  +   +EG     L    EA   +       P     + +  L   +
Sbjct: 8   TDYPFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAE 67

Query: 61  LKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRA 108
            ++          A  L+P  +     L  +    ++ + A+  L+  
Sbjct: 68  NEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAW 115

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 62.7 bits (153), Expect = 9e-12
 Identities = 22/98 (22%), Positives = 36/98 (36%)

Query: 11  NLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDD 70
           ++ D  ++ E   +    +Y E       A+  NP       +  + Y     Y     +
Sbjct: 135 DIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAAN 194

Query: 71  CRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRA 108
            R+A+EL P   +    LG  L   N   EA+    RA
Sbjct: 195 LRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRA 232

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 58.1 bits (141), Expect = 4e-10
 Identities = 17/103 (16%), Positives = 32/103 (31%), Gaps = 15/103 (14%)

Query: 21  GNRYFGLRQYEEAINCYTRAIIKNP---------------VIPSYFTNRALCYLKLKQYV 65
              +        A+      ++  P               +      +    +    +Y 
Sbjct: 96  AVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYR 155

Query: 66  HCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRA 108
            C      ALE+ P+  +    LG   +  N+YD A  +L+RA
Sbjct: 156 ECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRA 198

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 53.8 bits (130), Expect = 9e-09
 Identities = 14/103 (13%), Positives = 22/103 (21%), Gaps = 15/103 (14%)

Query: 21  GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
           G       +   AI     A + +P   +     A+ +             R  L  +P 
Sbjct: 62  GLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQ 121

Query: 81  LVKA---------------QFFLGQALHEINHYDEAVKHLQRA 108
             +                           N Y E    L  A
Sbjct: 122 YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAA 164

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 46.1 bits (110), Expect = 3e-06
 Identities = 16/85 (18%), Positives = 22/85 (25%), Gaps = 4/85 (4%)

Query: 29  QYEEAINCYTRAIIKNPVI--PSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQF 86
              +    Y      NP +   +      L  LKL              +  P   +A  
Sbjct: 2   HMLQNNTDYPFEA-NNPYMYHENPM-EEGLSMLKLANLAEAALAFEAVCQAAPEREEAWR 59

Query: 87  FLGQALHEINHYDEAVKHLQRAYDL 111
            LG    E      A+  L  A  L
Sbjct: 60  SLGLTQAENEKDGLAIIALNHARML 84

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 62.8 bits (153), Expect = 3e-12
 Identities = 17/92 (18%), Positives = 28/92 (30%), Gaps = 1/92 (1%)

Query: 21  GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
              Y   R Y++A   Y   + K P         A   +   Q         K L+LE  
Sbjct: 61  ALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD 120

Query: 81  LVKAQFFLGQALHEI-NHYDEAVKHLQRAYDL 111
            + A  FLG   +       + ++   +    
Sbjct: 121 NLAANIFLGNYYYLTAEQEKKKLETDYKKLSS 152

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 62.1 bits (151), Expect = 5e-12
 Identities = 16/112 (14%), Positives = 36/112 (32%), Gaps = 16/112 (14%)

Query: 16  ELKDEGNRYFGLRQYEEAINCYTRAIIKNP----------------VIPSYFTNRALCYL 59
           E+  + +      Q  +A++ + + I  N                 +     T  AL Y 
Sbjct: 6   EMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYK 65

Query: 60  KLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDL 111
           K + Y       ++ L+  P+ V       +         +A++  ++   L
Sbjct: 66  KNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQL 117

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 61.7 bits (150), Expect = 7e-12
 Identities = 14/92 (15%), Positives = 29/92 (31%), Gaps = 1/92 (1%)

Query: 21  GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRA-LCYLKLKQYVHCCDDCRKALELEP 79
                   Q ++A+  Y + +       +         YL  +Q     +   K L    
Sbjct: 95  AEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPT 154

Query: 80  SLVKAQFFLGQALHEINHYDEAVKHLQRAYDL 111
            +  A++  G +      Y++A   LQ+    
Sbjct: 155 KMQYARYRDGLSKLFTTRYEKARNSLQKVILR 186

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 43.2 bits (102), Expect = 2e-05
 Identities = 14/93 (15%), Positives = 27/93 (29%), Gaps = 18/93 (19%)

Query: 24  YFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVK 83
           Y    Q ++ +    + +     +        L  L   +Y    +  +K +   PS   
Sbjct: 133 YLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPS--- 189

Query: 84  AQFFLGQALHEINHYDEAVKHLQRAYDLSREQN 116
                           EA K L +   + +E N
Sbjct: 190 ---------------TEAQKTLDKILRIEKEVN 207

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 64.8 bits (158), Expect = 3e-12
 Identities = 14/95 (14%), Positives = 25/95 (26%)

Query: 21  GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
                 L   +  +    +A    P       +       L+          +A  L P 
Sbjct: 283 SGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQ 342

Query: 81  LVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQ 115
            V A          +      +  L +A+ L+ EQ
Sbjct: 343 QVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQ 377

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 64.8 bits (158), Expect = 3e-12
 Identities = 16/95 (16%), Positives = 27/95 (28%)

Query: 21  GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
           G     L   +  +    +A    P       +       L+          +A  L P 
Sbjct: 317 GGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPE 376

Query: 81  LVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQ 115
            V A    G     +      +  L +A+ L+ EQ
Sbjct: 377 QVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQ 411

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 63.6 bits (155), Expect = 7e-12
 Identities = 14/95 (14%), Positives = 25/95 (26%)

Query: 21  GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
                 L   +  +    +A    P       +       L+          +A  L P 
Sbjct: 79  DGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPE 138

Query: 81  LVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQ 115
            V A          +      +  L +A+ L+ EQ
Sbjct: 139 QVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQ 173

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 63.2 bits (154), Expect = 1e-11
 Identities = 12/88 (13%), Positives = 20/88 (22%)

Query: 21  GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
           G     L   +  +    +A    P       +       L+          +A  L P 
Sbjct: 385 GGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQ 444

Query: 81  LVKAQFFLGQALHEINHYDEAVKHLQRA 108
            V A    G     +      +     A
Sbjct: 445 QVVAIASNGGGRPALESIVAQLSRPDPA 472

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 62.8 bits (153), Expect = 1e-11
 Identities = 14/92 (15%), Positives = 26/92 (28%)

Query: 21  GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
           G     L   +  +    +A    P       + +     L+          +A  L P 
Sbjct: 249 GGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQ 308

Query: 81  LVKAQFFLGQALHEINHYDEAVKHLQRAYDLS 112
            V A    G     +      +  L +A+ L+
Sbjct: 309 QVVAIASNGGGKQALETVQRLLPVLCQAHGLT 340

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 62.5 bits (152), Expect = 2e-11
 Identities = 14/95 (14%), Positives = 26/95 (27%)

Query: 21  GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
                 L   +  +    +A    P       +       L+          +A  L P 
Sbjct: 113 DGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPE 172

Query: 81  LVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQ 115
            V A    G     +      +  L +A+ L+ +Q
Sbjct: 173 QVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQ 207

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 61.3 bits (149), Expect = 5e-11
 Identities = 13/99 (13%), Positives = 26/99 (26%)

Query: 21  GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
                 L   +  +    +A    P       +       L+          +A  L P 
Sbjct: 351 DGGKQALETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPE 410

Query: 81  LVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNY 119
            V A          +      +  L +A+ L+ +Q +  
Sbjct: 411 QVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAI 449

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 61.3 bits (149), Expect = 5e-11
 Identities = 13/91 (14%), Positives = 23/91 (25%)

Query: 21  GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
                 L   +  +    +A    P       +       L+          +A  L P 
Sbjct: 147 DGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQ 206

Query: 81  LVKAQFFLGQALHEINHYDEAVKHLQRAYDL 111
            V A    G     +      +  L +A+ L
Sbjct: 207 QVVAIASNGGGKQALETVQRLLPVLCQAHGL 237

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 60.5 bits (147), Expect = 8e-11
 Identities = 14/95 (14%), Positives = 26/95 (27%)

Query: 21  GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
           G     L   +  +    +A    P       +       L+          +A  L P 
Sbjct: 215 GGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQ 274

Query: 81  LVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQ 115
            V A          +      +  L +A+ L+ +Q
Sbjct: 275 QVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQ 309

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 49.7 bits (119), Expect = 3e-07
 Identities = 16/95 (16%), Positives = 28/95 (29%), Gaps = 5/95 (5%)

Query: 26  GLRQYEEAINCYTRAIIK-----NPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
           G     EA++ +  A+        P       +       L+          +A  L P 
Sbjct: 45  GGVTAVEAVHAWRNALTGAPLNLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQ 104

Query: 81  LVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQ 115
            V A          +      +  L +A+ L+ EQ
Sbjct: 105 QVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQ 139

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 41.7 bits (98), Expect = 1e-04
 Identities = 7/59 (11%), Positives = 12/59 (20%)

Query: 21  GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEP 79
                 L   +  +    +A    P       +       L+  V        AL    
Sbjct: 419 DGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGRPALESIVAQLSRPDPALAALT 477

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 64.3 bits (157), Expect = 4e-12
 Identities = 17/88 (19%), Positives = 37/88 (42%)

Query: 21  GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
           G  +    ++  AI+ +  A+   P   S +           +     +   +ALE++P 
Sbjct: 220 GVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG 279

Query: 81  LVKAQFFLGQALHEINHYDEAVKHLQRA 108
            +++++ LG +   +  Y EAV +   A
Sbjct: 280 FIRSRYNLGISCINLGAYREAVSNFLTA 307

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 57.0 bits (138), Expect = 1e-09
 Identities = 9/88 (10%), Positives = 19/88 (21%)

Query: 21  GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
           G         + AI    R +   P         A+ Y         C+  +  ++  P 
Sbjct: 106 GITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPK 165

Query: 81  LVKAQFFLGQALHEINHYDEAVKHLQRA 108
                     +        ++       
Sbjct: 166 YKYLVKNKKGSPGLTRRMSKSPVDSSVL 193

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 53.1 bits (128), Expect = 2e-08
 Identities = 14/100 (14%), Positives = 27/100 (27%), Gaps = 12/100 (12%)

Query: 21  GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
              Y      ++A       I +NP       N+       ++      D      ++  
Sbjct: 140 AVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKEL 199

Query: 81  LVKA------------QFFLGQALHEINHYDEAVKHLQRA 108
            ++A            Q  LG   H    ++ A+     A
Sbjct: 200 YLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAA 239

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 53.1 bits (128), Expect = 2e-08
 Identities = 17/102 (16%), Positives = 27/102 (26%)

Query: 10  NNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCD 69
             ++ +    E            +   Y                  L  LK         
Sbjct: 27  EEMARRNWISENQEAQNQVTVSASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTIL 86

Query: 70  DCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDL 111
               A+  +P   +A  FLG    E  +   A+  LQR  +L
Sbjct: 87  FMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLEL 128

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 52.8 bits (127), Expect = 3e-08
 Identities = 18/96 (18%), Positives = 29/96 (30%), Gaps = 2/96 (2%)

Query: 15  KELKDEGNRYFGLRQYEEAINCYTRAIIKNP--VIPSYFTNRALCYLKLKQYVHCCDDCR 72
              +            E     Y  A  +N   + P   T   + +    ++    D   
Sbjct: 178 GLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFN 237

Query: 73  KALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRA 108
            AL + P        LG  L   +  +EAV+   RA
Sbjct: 238 AALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRA 273

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 63.5 bits (155), Expect = 7e-12
 Identities = 21/88 (23%), Positives = 41/88 (46%)

Query: 21  GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
           G  +    +Y++A++C+T A+   P     +           Q        R+ALEL+P 
Sbjct: 224 GVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPG 283

Query: 81  LVKAQFFLGQALHEINHYDEAVKHLQRA 108
            +++++ LG +   +  + EAV+H   A
Sbjct: 284 YIRSRYNLGISCINLGAHREAVEHFLEA 311

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 56.6 bits (137), Expect = 1e-09
 Identities = 18/91 (19%), Positives = 30/91 (32%), Gaps = 2/91 (2%)

Query: 20  EGNRYFGLRQYEEAINCYTRAIIKNP--VIPSYFTNRALCYLKLKQYVHCCDDCRKALEL 77
                     + E    +  A+  +P  + P       + +    +Y    D    AL +
Sbjct: 187 ILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV 246

Query: 78  EPSLVKAQFFLGQALHEINHYDEAVKHLQRA 108
            P+       LG  L   N  +EAV   +RA
Sbjct: 247 RPNDYLLWNKLGATLANGNQSEEAVAAYRRA 277

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 49.3 bits (118), Expect = 4e-07
 Identities = 13/103 (12%), Positives = 23/103 (22%), Gaps = 15/103 (14%)

Query: 21  GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
           G       Q   AI+   R +   P   +     A+ +         C+  R  L   P+
Sbjct: 105 GTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA 164

Query: 81  LVKAQFFLGQALHEINH---------------YDEAVKHLQRA 108
                    +                      + E  +    A
Sbjct: 165 YAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAA 207

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 46.2 bits (110), Expect = 4e-06
 Identities = 13/82 (15%), Positives = 25/82 (30%), Gaps = 4/82 (4%)

Query: 31  EEAINCYTRAIIKNPVIPSYFT----NRALCYLKLKQYVHCCDDCRKALELEPSLVKAQF 86
           +     Y +        P           L  L+     +       A++ +P  ++A  
Sbjct: 43  DLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQ 102

Query: 87  FLGQALHEINHYDEAVKHLQRA 108
           +LG    E      A+  L+R 
Sbjct: 103 YLGTTQAENEQELLAISALRRC 124

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 60.1 bits (147), Expect = 7e-12
 Identities = 30/88 (34%), Positives = 48/88 (54%)

Query: 21  GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
           GN Y+    Y+EAI  Y +A+  +P     + N    Y K   Y    +  +KALEL+P+
Sbjct: 16  GNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN 75

Query: 81  LVKAQFFLGQALHEINHYDEAVKHLQRA 108
             +A + LG A ++   YDEA+++ Q+A
Sbjct: 76  NAEAWYNLGNAYYKQGDYDEAIEYYQKA 103

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 50.9 bits (123), Expect = 1e-08
 Identities = 24/74 (32%), Positives = 37/74 (50%)

Query: 21  GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
           GN Y+    Y+EAI  Y +A+  +P     + N    Y K   Y    +  +KALEL+P+
Sbjct: 50  GNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN 109

Query: 81  LVKAQFFLGQALHE 94
             +A+  LG A  +
Sbjct: 110 NAEAKQNLGNAKQK 123

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 40.1 bits (95), Expect = 8e-05
 Identities = 20/56 (35%), Positives = 32/56 (57%)

Query: 53  NRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRA 108
           N    Y K   Y    +  +KALEL+P+  +A + LG A ++   YDEA+++ Q+A
Sbjct: 14  NLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKA 69

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 60.7 bits (148), Expect = 2e-11
 Identities = 14/96 (14%), Positives = 35/96 (36%), Gaps = 4/96 (4%)

Query: 27  LRQYEEAINCYTRAIIKNPVIPSY---FTNRALCYLKLKQYVHCCDDCRKALELEPSLVK 83
           L +  E++  + +A+  +P  P+      N+ +C  K  Q+       +++L  +P    
Sbjct: 90  LNRPAESMAYFDKAL-ADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPP 148

Query: 84  AQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNY 119
           A   L +         +A  + ++          + 
Sbjct: 149 AFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADD 184

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 55.0 bits (133), Expect = 3e-09
 Identities = 19/89 (21%), Positives = 34/89 (38%), Gaps = 1/89 (1%)

Query: 21  GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
              Y   + Y +A      A+  +P     +  RA  Y  LK      +  R+AL ++P 
Sbjct: 15  AMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD 74

Query: 81  LVKAQFFLGQAL-HEINHYDEAVKHLQRA 108
             +     G  L   +N   E++ +  +A
Sbjct: 75  SAEINNNYGWFLCGRLNRPAESMAYFDKA 103

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 43.0 bits (102), Expect = 2e-05
 Identities = 16/72 (22%), Positives = 29/72 (40%), Gaps = 3/72 (4%)

Query: 52  TNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDL 111
           T  A+ Y++ + Y         AL+ +P    A     +    +   D+A +  ++A  +
Sbjct: 12  TQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSI 71

Query: 112 SR---EQNLNYG 120
                E N NYG
Sbjct: 72  KPDSAEINNNYG 83

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 60.7 bits (148), Expect = 3e-11
 Identities = 19/88 (21%), Positives = 33/88 (37%)

Query: 21  GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
           G  Y      E+A     +A+  +P         A+ +    +     ++ RKAL  +  
Sbjct: 44  GLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSR 103

Query: 81  LVKAQFFLGQALHEINHYDEAVKHLQRA 108
             +     G  L+E   Y+EA + L  A
Sbjct: 104 NARVLNNYGGFLYEQKRYEEAYQRLLEA 131

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 50.7 bits (122), Expect = 8e-08
 Identities = 13/93 (13%), Positives = 32/93 (34%), Gaps = 2/93 (2%)

Query: 21  GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALE--LE 78
              +    + + A   Y +A+  +        N      + K+Y        +A +  L 
Sbjct: 78  AVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLY 137

Query: 79  PSLVKAQFFLGQALHEINHYDEAVKHLQRAYDL 111
           P   +    LG    ++    +A ++ +++  L
Sbjct: 138 PERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL 170

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 46.9 bits (112), Expect = 2e-06
 Identities = 15/80 (18%), Positives = 24/80 (30%), Gaps = 1/80 (1%)

Query: 29  QYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFL 88
            +    N   +           +    L YL+           RKALE++PS   A   L
Sbjct: 19  SHMGDQN-PLKTDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAAL 77

Query: 89  GQALHEINHYDEAVKHLQRA 108
                       A +  ++A
Sbjct: 78  AVVFQTEMEPKLADEEYRKA 97

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 45.0 bits (107), Expect = 7e-06
 Identities = 11/88 (12%), Positives = 27/88 (30%)

Query: 21  GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
           G     +++  +A   + +++  N   PS     A    K ++YV          +    
Sbjct: 148 GLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQ 207

Query: 81  LVKAQFFLGQALHEINHYDEAVKHLQRA 108
             ++     +        D A  +  + 
Sbjct: 208 NARSLLLGIRLAKVFEDRDTAASYGLQL 235

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 59.1 bits (144), Expect = 8e-11
 Identities = 17/90 (18%), Positives = 29/90 (32%), Gaps = 1/90 (1%)

Query: 21  GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
           G  Y  L + ++A     +A+             A  YL + +         KALE  P 
Sbjct: 125 GLVYALLGERDKAEASLKQALALEDTPEIRS-ALAELYLSMGRLDEALAQYAKALEQAPK 183

Query: 81  LVKAQFFLGQALHEINHYDEAVKHLQRAYD 110
            +  +     AL      +EA +     + 
Sbjct: 184 DLDLRVRYASALLLKGKAEEAARAAALEHH 213

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 58.3 bits (142), Expect = 2e-10
 Identities = 19/99 (19%), Positives = 38/99 (38%), Gaps = 11/99 (11%)

Query: 21  GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
           G + + L +Y+ A+  + RA+ +NP  P      A   LKL       ++ +  +   P 
Sbjct: 12  GVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR 71

Query: 81  LVKAQFFLGQALHEINH-----------YDEAVKHLQRA 108
            +     L +A   +              ++A+  L+ A
Sbjct: 72  YLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDA 110

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 56.4 bits (137), Expect = 6e-10
 Identities = 12/99 (12%), Positives = 25/99 (25%), Gaps = 11/99 (11%)

Query: 21  GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCC-----------D 69
                 L     A+      + + P     +   +  Y+ L +                 
Sbjct: 46  ARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALS 105

Query: 70  DCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRA 108
             + A  + P         G     +   D+A   L++A
Sbjct: 106 VLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQA 144

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 43.3 bits (103), Expect = 2e-05
 Identities = 8/56 (14%), Positives = 23/56 (41%)

Query: 53  NRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRA 108
              +    L +Y        +AL+  P   +A ++L +   ++   + A+++ +  
Sbjct: 10  RLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTL 65

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 60.4 bits (146), Expect = 9e-11
 Identities = 19/134 (14%), Positives = 42/134 (31%), Gaps = 7/134 (5%)

Query: 28  RQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVH-CCDDCRKALELEPSLVKAQF 86
            + E+ +      +    V       +         Y         KA++LEP LV+A  
Sbjct: 82  EEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWN 141

Query: 87  FLGQALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIACQLRIAKKKRWAETEEKRIAQE 146
            LG+   +      A      A  L+  +N          L +  ++   ++ ++     
Sbjct: 142 QLGEVYWKKGDVTSAHTCFSGA--LTHCKN----KVSLQNLSMVLRQLQTDSGDEHSRHV 195

Query: 147 IELLTYLNRLITED 160
           ++ +      +  D
Sbjct: 196 MDSVRQAKLAVQMD 209

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 58.9 bits (142), Expect = 3e-10
 Identities = 17/102 (16%), Positives = 37/102 (36%), Gaps = 3/102 (2%)

Query: 10  NNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSY---FTNRALCYLKLKQYVH 66
             L +  L    N     +  ++A++ Y +A   +    S      NRA  +   + Y  
Sbjct: 217 YILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGE 276

Query: 67  CCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRA 108
             +   +A  L+P+  + Q    Q L  ++     ++   + 
Sbjct: 277 ALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 52.3 bits (125), Expect = 5e-08
 Identities = 14/103 (13%), Positives = 30/103 (29%), Gaps = 14/103 (13%)

Query: 28  RQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFF 87
               EA    ++A+   P +   +      Y K             AL    +   +   
Sbjct: 117 DYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQN 175

Query: 88  LGQALHEI---------NHYDEAVKHLQRAYDLSREQNLNYGD 121
           L   L ++          H  ++V+  + A  +    ++  G 
Sbjct: 176 LSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM----DVLDGR 214

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 48.5 bits (115), Expect = 9e-07
 Identities = 16/115 (13%), Positives = 38/115 (33%), Gaps = 18/115 (15%)

Query: 21  GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCC---------DDC 71
           G  Y+       A  C++ A+       S   N ++   +L+                  
Sbjct: 144 GEVYWKKGDVTSAHTCFSGALTHCKNKVSLQ-NLSMVLRQLQTDSGDEHSRHVMDSVRQA 202

Query: 72  RKALELEPSLVKAQFFLGQAL--------HEINHYDEAVKHLQRAYDLSREQNLN 118
           + A++++    ++ + LG A                +A+    +A  + R+ + N
Sbjct: 203 KLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSN 257

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 46.9 bits (111), Expect = 2e-06
 Identities = 12/102 (11%), Positives = 25/102 (24%), Gaps = 11/102 (10%)

Query: 21  GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYL-----------KLKQYVHCCD 69
            +     R   +++     A+  + +    +      YL             +Q +    
Sbjct: 186 DSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYA 245

Query: 70  DCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDL 111
              K      S                 Y EA++   +A  L
Sbjct: 246 QAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL 287

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 60.4 bits (146), Expect = 1e-10
 Identities = 15/95 (15%), Positives = 27/95 (28%)

Query: 21  GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
           G     L   +  +    +A    P       +       L+          +A  L P 
Sbjct: 301 GGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPD 360

Query: 81  LVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQ 115
            V A    G     +      +  L +A+ L+ +Q
Sbjct: 361 QVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQ 395

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 60.4 bits (146), Expect = 1e-10
 Identities = 13/95 (13%), Positives = 25/95 (26%)

Query: 21  GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
                 L   +  +    +A    P       +       L+          +A  L P 
Sbjct: 199 NGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETMQRLLPVLCQAHGLPPD 258

Query: 81  LVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQ 115
            V A          +      +  L +A+ L+ +Q
Sbjct: 259 QVVAIASNIGGKQALETVQRLLPVLCQAHGLTPDQ 293

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 60.0 bits (145), Expect = 2e-10
 Identities = 14/95 (14%), Positives = 26/95 (27%)

Query: 21  GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
                 L   +  +    +A    P       +       L+          +A  L P 
Sbjct: 233 DGGKQALETMQRLLPVLCQAHGLPPDQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPD 292

Query: 81  LVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQ 115
            V A    G     +      +  L +A+ L+ +Q
Sbjct: 293 QVVAIASHGGGKQALETVQRLLPVLCQAHGLTPDQ 327

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 57.0 bits (137), Expect = 1e-09
 Identities = 14/95 (14%), Positives = 27/95 (28%)

Query: 21  GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
           G     L   +  +    +A     V      +       L+          +A  L P+
Sbjct: 572 GGGKQALETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPA 631

Query: 81  LVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQ 115
            V A          +      +  L +A+ L+ +Q
Sbjct: 632 QVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQ 666

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 56.6 bits (136), Expect = 2e-09
 Identities = 13/95 (13%), Positives = 25/95 (26%)

Query: 21  GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
                 L   +  +    +A    P       +       L+          +A  L P 
Sbjct: 267 IGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHGLTPD 326

Query: 81  LVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQ 115
            V A          +      +  L +A+ L+ +Q
Sbjct: 327 QVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQ 361

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 55.4 bits (133), Expect = 5e-09
 Identities = 16/124 (12%), Positives = 34/124 (27%)

Query: 21  GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
                 L   +  +    +A    P       +       L+          +A  L P 
Sbjct: 606 IGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPD 665

Query: 81  LVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIACQLRIAKKKRWAETEE 140
            V A    G     +      +  L +A+ L++EQ +    +   +  +   +R      
Sbjct: 666 QVVAIASNGGGKQALETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPVLC 725

Query: 141 KRIA 144
           +   
Sbjct: 726 QAHG 729

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 55.0 bits (132), Expect = 7e-09
 Identities = 13/95 (13%), Positives = 24/95 (25%)

Query: 21  GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
           G     L   +  +    +A    P       +       L+          +A  L   
Sbjct: 538 GGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQV 597

Query: 81  LVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQ 115
            V A          +      +  L +A+ L+  Q
Sbjct: 598 QVVAIASNIGGKQALETVQRLLPVLCQAHGLTPAQ 632

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 52.3 bits (125), Expect = 6e-08
 Identities = 14/95 (14%), Positives = 26/95 (27%)

Query: 21  GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
                 L   +  +    +A    P       +       L+          +A  L P 
Sbjct: 504 IGGKQALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPD 563

Query: 81  LVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQ 115
            V A    G     +      +  L +A+ L++ Q
Sbjct: 564 QVVAIASNGGGKQALETVQRLLPVLCQAHGLTQVQ 598

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 52.0 bits (124), Expect = 8e-08
 Identities = 12/95 (12%), Positives = 24/95 (25%)

Query: 21  GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
                 L   +  +    +A    P       +       L+          +A  L   
Sbjct: 640 DGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQE 699

Query: 81  LVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQ 115
            V A          +      +  L +A+ L+ +Q
Sbjct: 700 QVVAIASNNGGKQALETVQRLLPVLCQAHGLTPDQ 734

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 51.6 bits (123), Expect = 1e-07
 Identities = 12/95 (12%), Positives = 24/95 (25%)

Query: 21  GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
                 L   +  +    +     P       +       L+          +A  L P 
Sbjct: 436 DGGKQALETVQRLLPVLCQTHGLTPAQVVAIASHDGGKQALETVQQLLPVLCQAHGLTPD 495

Query: 81  LVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQ 115
            V A          +      +  L +A+ L+ +Q
Sbjct: 496 QVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQ 530

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 51.2 bits (122), Expect = 1e-07
 Identities = 14/99 (14%), Positives = 27/99 (27%)

Query: 21  GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
                 L   ++ +    +A    P       +       L           +A  L P 
Sbjct: 470 DGGKQALETVQQLLPVLCQAHGLTPDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTPD 529

Query: 81  LVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNY 119
            V A    G     +      +  L +A+ L+ +Q +  
Sbjct: 530 QVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAI 568

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 50.8 bits (121), Expect = 2e-07
 Identities = 16/124 (12%), Positives = 33/124 (26%)

Query: 21  GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
           G     L   +  +    +A            +       L+          +A  L P 
Sbjct: 674 GGGKQALETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPD 733

Query: 81  LVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIACQLRIAKKKRWAETEE 140
            V A    G     +      +  L +A+ L+  Q +    +I  +  +   +R      
Sbjct: 734 QVVAIASNGGGKQALETVQRLLPVLCQAHGLTPAQVVAIASNIGGKQALETVQRLLPVLC 793

Query: 141 KRIA 144
           +   
Sbjct: 794 QDHG 797

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 49.6 bits (118), Expect = 4e-07
 Identities = 14/95 (14%), Positives = 26/95 (27%), Gaps = 1/95 (1%)

Query: 21  GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
                 L   +  +    +A    P       +       L+          +A  L P 
Sbjct: 335 DGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPD 394

Query: 81  LVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQ 115
            V A    G     +      +  L +A+ L+ +Q
Sbjct: 395 QVVAIASNGGK-QALETVQRLLPVLCQAHGLTPDQ 428

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 47.3 bits (112), Expect = 2e-06
 Identities = 12/93 (12%), Positives = 27/93 (29%)

Query: 27  LRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQF 86
           L   +  +    +A    P       +       L+          +   L P+ V A  
Sbjct: 408 LETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQVVAIA 467

Query: 87  FLGQALHEINHYDEAVKHLQRAYDLSREQNLNY 119
                   +    + +  L +A+ L+ +Q +  
Sbjct: 468 SHDGGKQALETVQQLLPVLCQAHGLTPDQVVAI 500

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 46.9 bits (111), Expect = 3e-06
 Identities = 15/95 (15%), Positives = 27/95 (28%), Gaps = 5/95 (5%)

Query: 26  GLRQYEEAINCYTRAIIK-----NPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
           G     EA++    A+        P       +       L+          +A  L P+
Sbjct: 165 GGVTAMEAVHASRNALTGAPLNLTPAQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPA 224

Query: 81  LVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQ 115
            V A          +      +  L +A+ L  +Q
Sbjct: 225 QVVAIASHDGGKQALETMQRLLPVLCQAHGLPPDQ 259

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 43.9 bits (103), Expect = 3e-05
 Identities = 12/89 (13%), Positives = 24/89 (26%)

Query: 27  LRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQF 86
           L   +  +    +A    P       +       L+          +A  L P+ V A  
Sbjct: 714 LETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPAQVVAIA 773

Query: 87  FLGQALHEINHYDEAVKHLQRAYDLSREQ 115
                   +      +  L + + L+  Q
Sbjct: 774 SNIGGKQALETVQRLLPVLCQDHGLTLAQ 802

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 40.8 bits (95), Expect = 3e-04
 Identities = 14/124 (11%), Positives = 34/124 (27%)

Query: 21  GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
           G     L   +  +    +A    P       +       L+          +   L  +
Sbjct: 742 GGGKQALETVQRLLPVLCQAHGLTPAQVVAIASNIGGKQALETVQRLLPVLCQDHGLTLA 801

Query: 81  LVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIACQLRIAKKKRWAETEE 140
            V A          +      +  L +A+ L+++Q +    +I  +  +   +R      
Sbjct: 802 QVVAIASNIGGKQALETVQRLLPVLCQAHGLTQDQVVAIASNIGGKQALETVQRLLPVLC 861

Query: 141 KRIA 144
           +   
Sbjct: 862 QDHG 865

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 55.5 bits (134), Expect = 3e-10
 Identities = 12/83 (14%), Positives = 27/83 (32%), Gaps = 3/83 (3%)

Query: 29  QYEEAINCYTRAIIKNPVIPSYFT---NRALCYLKLKQYVHCCDDCRKALELEPSLVKAQ 85
              +A+  Y +AI                   +  L +Y          ++  P+    +
Sbjct: 5   LEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALR 64

Query: 86  FFLGQALHEINHYDEAVKHLQRA 108
            F    L+ +  Y++ V+ L + 
Sbjct: 65  VFYAMVLYNLGRYEQGVELLLKI 87

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 40.5 bits (95), Expect = 6e-05
 Identities = 14/91 (15%), Positives = 29/91 (31%), Gaps = 13/91 (14%)

Query: 21  GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALE-LEP 79
           G+ +  L +Y +A       + + P   +     A+    L +Y        + +E L  
Sbjct: 34  GSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRY-------EQGVELLLK 86

Query: 80  SLVKAQFFLGQALHEINHYDEAVKHLQRAYD 110
            + +           I  Y +A+       D
Sbjct: 87  IIAET-----SDDETIQSYKQAILFYADKLD 112

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 57.3 bits (138), Expect = 1e-09
 Identities = 22/95 (23%), Positives = 38/95 (40%), Gaps = 7/95 (7%)

Query: 24  YFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVH---CCDDCRKALELEPS 80
             G  Q E A  C+ +A+ K P  P + +  A+   +L  +       D  R+A+ L P 
Sbjct: 148 KCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD 207

Query: 81  LVKAQFFLGQALHEI----NHYDEAVKHLQRAYDL 111
               +  L   LH++        E  K ++ A + 
Sbjct: 208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEK 242

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 54.6 bits (131), Expect = 8e-09
 Identities = 18/110 (16%), Positives = 32/110 (29%), Gaps = 19/110 (17%)

Query: 21  GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLK-------------------L 61
              Y    + ++AI    +A+   P           CY                     L
Sbjct: 254 AKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLL 313

Query: 62  KQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDL 111
           +   H     +KA E   +L +    L       + Y+EA  + Q+ +  
Sbjct: 314 ELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSK 363

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 52.6 bits (126), Expect = 3e-08
 Identities = 18/93 (19%), Positives = 35/93 (37%), Gaps = 4/93 (4%)

Query: 23  RYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDD----CRKALELE 78
           R       + AI+   +AI  NP         AL   K+++      +      +ALE  
Sbjct: 184 RLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA 243

Query: 79  PSLVKAQFFLGQALHEINHYDEAVKHLQRAYDL 111
           P +        +     +  D+A++ L++A + 
Sbjct: 244 PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY 276

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 44.9 bits (106), Expect = 1e-05
 Identities = 14/99 (14%), Positives = 31/99 (31%), Gaps = 5/99 (5%)

Query: 21  GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
                   +  E       A+ K P +     + A  Y +  +     +  +KALE  P+
Sbjct: 220 HKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN 279

Query: 81  LVKAQFFLG-----QALHEINHYDEAVKHLQRAYDLSRE 114
                  +G     +    +N  +  +   ++  +L   
Sbjct: 280 NAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGH 318

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 44.5 bits (105), Expect = 2e-05
 Identities = 15/103 (14%), Positives = 30/103 (29%), Gaps = 4/103 (3%)

Query: 10  NNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCD 69
             + +        +   L     A+    +A   N  +    +  A  +    QY     
Sbjct: 296 FQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEY 355

Query: 70  DCRKALELEPSLVKAQ---FFLGQAL-HEINHYDEAVKHLQRA 108
             +K    E + V  Q      G    +++   D+A+ H    
Sbjct: 356 YFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEG 398

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 41.8 bits (98), Expect = 1e-04
 Identities = 10/91 (10%), Positives = 28/91 (30%), Gaps = 10/91 (10%)

Query: 24  YFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVK 83
            + ++  ++AI+ +   +  N         +     KL++        +  L    +  +
Sbjct: 382 LYQMKCEDKAIHHFIEGVKINQ----KSREKEKMKDKLQKIA------KMRLSKNGADSE 431

Query: 84  AQFFLGQALHEINHYDEAVKHLQRAYDLSRE 114
           A   L           +A +  +R  +    
Sbjct: 432 ALHVLAFLQELNEKMQQADEDSERGLESGSL 462

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 Length = 159

 Score = 54.5 bits (130), Expect = 1e-09
 Identities = 20/144 (13%), Positives = 38/144 (26%), Gaps = 23/144 (15%)

Query: 18  KDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSY------------FTNRALCYLKLKQYV 65
             +  R     +Y+EA     RA+  +  +P                  A     L+ + 
Sbjct: 15  LSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFD 74

Query: 66  HCCDDCRKAL-------ELEPS----LVKAQFFLGQALHEINHYDEAVKHLQRAYDLSRE 114
                  KAL       EL        + A +    AL  +    EA+   ++  ++  E
Sbjct: 75  EALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE 134

Query: 115 QNLNYGDDIACQLRIAKKKRWAET 138
           +                +      
Sbjct: 135 RKGETPGKERMMEVAIDRIAQLGA 158

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 53.3 bits (128), Expect = 6e-09
 Identities = 17/97 (17%), Positives = 31/97 (31%), Gaps = 3/97 (3%)

Query: 21  GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCD---DCRKALEL 77
           G  Y     Y  ++  Y +A+         +   A                    KAL L
Sbjct: 51  GEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALAL 110

Query: 78  EPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSRE 114
           + + + A   L        +Y +A++  Q+  DL+  
Sbjct: 111 DSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSP 147

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 41.0 bits (96), Expect = 9e-05
 Identities = 15/96 (15%), Positives = 30/96 (31%), Gaps = 3/96 (3%)

Query: 16  ELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKAL 75
             +D  +++   +  E  +      I  NP     +      YL    Y +     R+AL
Sbjct: 12  RQRDPLHQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQAL 71

Query: 76  ELEPSLVKAQFFLGQALHEINHY---DEAVKHLQRA 108
           +L     +    L   L+         +    + +A
Sbjct: 72  QLRGENAELYAALATVLYYQASQHMTAQTRAMIDKA 107

>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus} Length = 85

 Score = 48.5 bits (116), Expect = 5e-08
 Identities = 9/36 (25%), Positives = 16/36 (44%)

Query: 215 GHFDPVTRVKLSADQLIPNFAMKEVVDNFLQENDWA 250
              DP  R  L+   L P   +KE +  +++E   +
Sbjct: 48  SPTDPFNRQMLTESMLEPVPELKEQIQAWMREKQSS 83

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 48.4 bits (116), Expect = 6e-08
 Identities = 14/75 (18%), Positives = 32/75 (42%)

Query: 42  IKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEA 101
           +++P  P      A  +LK            + +E +P  V   + LG+    ++  D+A
Sbjct: 1   MEDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDA 60

Query: 102 VKHLQRAYDLSREQN 116
           +    +  +++RE+ 
Sbjct: 61  IDTYAQGIEVAREEG 75

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 44.6 bits (106), Expect = 1e-06
 Identities = 10/87 (11%), Positives = 27/87 (31%), Gaps = 4/87 (4%)

Query: 21  GNRYFGLRQYEEAINCYTRAIIKNP-VIPSYFTNRALCYLKLKQYVHCCDDCRKALELEP 79
              +        A+  +   +  +P  + +Y+ +    Y +L +     D   + +E+  
Sbjct: 14  AQEHLKHDNASRALALFEELVETDPDYVGTYY-HLGKLYERLDRTDDAIDTYAQGIEVAR 72

Query: 80  SLVKAQFF--LGQALHEINHYDEAVKH 104
                +    L  A  +    +    H
Sbjct: 73  EEGTQKDLSELQDAKLKAEGLEHHHHH 99

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91

 Score = 48.2 bits (116), Expect = 7e-08
 Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 8/85 (9%)

Query: 10 NNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCD 69
           NL        GN Y+    Y+EAI  Y +A+  +P     + N    Y K   Y    +
Sbjct: 13 YNL--------GNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIE 64

Query: 70 DCRKALELEPSLVKAQFFLGQALHE 94
            +KALEL+P+  +A+  LG A  +
Sbjct: 65 YYQKALELDPNNAEAKQNLGNAKQK 89

>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2 Length = 98

 Score = 47.5 bits (113), Expect = 1e-07
 Identities = 12/33 (36%), Positives = 17/33 (51%)

Query: 215 GHFDPVTRVKLSADQLIPNFAMKEVVDNFLQEN 247
              DP  R  L+ DQ+ PN  +KE +  +L E 
Sbjct: 57  DQTDPFNRSPLTMDQIRPNTELKEKIQRWLAER 89

>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B Length = 100

 Score = 46.6 bits (111), Expect = 3e-07
 Identities = 9/36 (25%), Positives = 16/36 (44%)

Query: 215 GHFDPVTRVKLSADQLIPNFAMKEVVDNFLQENDWA 250
              DP  R  L+   L P   +KE +  +++E   +
Sbjct: 63  SPTDPFNRQTLTESMLEPVPELKEQIQAWMREKQNS 98

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 49.8 bits (119), Expect = 3e-07
 Identities = 27/131 (20%), Positives = 48/131 (36%), Gaps = 13/131 (9%)

Query: 3   KSHNFTTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIP------SYFTNRAL 56
                 T  L    L   G   F  ++Y EAI  Y  A  + P +        +    A 
Sbjct: 90  TPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAE 149

Query: 57  CYLKLKQYVHCCDDCRKALEL-------EPSLVKAQFFLGQALHEINHYDEAVKHLQRAY 109
            Y  +KQ         +AL++           +++ F +     +  HYD+A+ HL+ A 
Sbjct: 150 AYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAAL 209

Query: 110 DLSREQNLNYG 120
           +L+ +   +  
Sbjct: 210 ELAMDIQNDRF 220

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 45.2 bits (107), Expect = 8e-06
 Identities = 22/114 (19%), Positives = 39/114 (34%), Gaps = 15/114 (13%)

Query: 21  GNRYFGLRQYEEAINCYTRAI--------IKNPVIPSYFTNRALCYLKLKQYVHCCDDCR 72
              Y+ ++Q   ++    +A+             I S F   A  Y   K Y        
Sbjct: 148 AEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF-VIAGNYDDFKHYDKALPHLE 206

Query: 73  KALEL------EPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNYG 120
            ALEL      +  +  +   +  +         AV+H Q+A  +SRE+  +  
Sbjct: 207 AALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLL 260

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 48.7 bits (116), Expect = 7e-07
 Identities = 22/113 (19%), Positives = 42/113 (37%), Gaps = 13/113 (11%)

Query: 21  GNRYFGLRQYEEAINCYTRAIIKNPVIP------SYFTNRALCYLKLKQYVHCCDDCRKA 74
           G      R+Y  AI  + +A  K   +        +F   +  Y  +KQ     D  R+A
Sbjct: 110 GMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQA 169

Query: 75  LEL-------EPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNYG 120
            E+          L++          ++  Y++A+ H Q+AY ++  +     
Sbjct: 170 YEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQL 222

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 46.7 bits (111), Expect = 2e-06
 Identities = 23/108 (21%), Positives = 46/108 (42%), Gaps = 12/108 (11%)

Query: 21  GNRYFGLRQYEEAINCYTRAI-----IKN-PVIPSYFTNRALCYLKLKQYVHCCDDCRKA 74
              +  L+QYE+AI+ + +A       K   ++     N  LC     QY       ++A
Sbjct: 191 ATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRA 250

Query: 75  LEL------EPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQN 116
           + +       PSL +A F + Q  +++   D+A ++  +    S++  
Sbjct: 251 IAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAG 298

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 45.2 bits (107), Expect = 8e-06
 Identities = 18/114 (15%), Positives = 44/114 (38%), Gaps = 15/114 (13%)

Query: 21  GNRYFGLRQYEEAINCYTRAI--------IKNPVIPSYFTNRALCYLKLKQYVHCCDDCR 72
              Y+ ++Q   +++   +A             ++  +    A  +L LKQY       +
Sbjct: 150 SESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS-LFATNFLDLKQYEDAISHFQ 208

Query: 73  KALEL------EPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNYG 120
           KA  +         + +  + +G   +  + Y++A+ + +RA  +  E N+   
Sbjct: 209 KAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPS 262

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 Length = 158

 Score = 46.3 bits (109), Expect = 1e-06
 Identities = 19/114 (16%), Positives = 37/114 (32%), Gaps = 21/114 (18%)

Query: 19  DEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYV----------HCC 68
           D    +  +  +E+           NP+     T      L+L Q+              
Sbjct: 7   DTETEFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAI 66

Query: 69  DDCRKALELEPSLVKAQFFLGQALHEI-----------NHYDEAVKHLQRAYDL 111
               +AL ++P   +A + +G A               +++D A +  Q+A D 
Sbjct: 67  TKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE 120

>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2 Length = 78

 Score = 44.1 bits (105), Expect = 1e-06
 Identities = 8/42 (19%), Positives = 18/42 (42%)

Query: 206 AIDERRRKVGHFDPVTRVKLSADQLIPNFAMKEVVDNFLQEN 247
           +I +         P ++  L    L PN+ +K ++  + + N
Sbjct: 34  SIQKWLDAGHKTCPKSQETLLHAGLTPNYVLKSLIALWCESN 75

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 46.9 bits (112), Expect = 2e-06
 Identities = 25/109 (22%), Positives = 40/109 (36%), Gaps = 10/109 (9%)

Query: 16  ELKDEGNRYFGLRQYEEAINCYTRAIIKN----PVIPSYFTNRALCYLKLKQYVHCCDDC 71
           EL  EG R          ++ +  A+         + + ++     Y  L  Y    +  
Sbjct: 11  ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYH 70

Query: 72  RKALEL------EPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSRE 114
              L L      +    KA   LG  L  + ++DEA+   QR  D+SRE
Sbjct: 71  HHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRE 119

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 45.8 bits (109), Expect = 5e-06
 Identities = 26/116 (22%), Positives = 47/116 (40%), Gaps = 12/116 (10%)

Query: 21  GNRYFGLRQYEEAINCYTRAI-----IKN-PVIPSYFTNRALCYLKLKQYVHCCDDCRKA 74
           GN Y  L ++E A   Y + +     +K+  V      +    Y  L+ Y    D   K 
Sbjct: 234 GNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH 293

Query: 75  LEL------EPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIA 124
           L +           +A + LG A   + ++D+A+   ++  ++SRE     G+  A
Sbjct: 294 LAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTA 349

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 43.8 bits (104), Expect = 3e-05
 Identities = 16/106 (15%), Positives = 43/106 (40%), Gaps = 12/106 (11%)

Query: 21  GNRYFGLRQYEEAINCYTRAI-IK-----NPVIPSYFTNRALCYLKLKQYVHCCDDCRKA 74
           GN ++ L  + +A+  + + + I             ++N    Y+ L ++    +  +K 
Sbjct: 194 GNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKT 253

Query: 75  LEL------EPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSRE 114
           L L           ++ + LG     +  Y++A+ +  +   +++E
Sbjct: 254 LLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE 299

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 46.9 bits (112), Expect = 3e-06
 Identities = 22/109 (20%), Positives = 35/109 (32%), Gaps = 10/109 (9%)

Query: 16  ELKDEGNRYFGLRQYEEAINCYTRAI-IKN---PVIPSYFTNRALCYLKLKQYVHCCDDC 71
           EL  EG R          +  +  AI         + + ++     Y  L  Y       
Sbjct: 50  ELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYH 109

Query: 72  RKALEL------EPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSRE 114
           +  L L           K+   LG  L  +  +DEA    +R   L+R+
Sbjct: 110 KHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQ 158

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 45.0 bits (107), Expect = 1e-05
 Identities = 22/115 (19%), Positives = 43/115 (37%), Gaps = 20/115 (17%)

Query: 10  NNLSDKELKDEGNRYFGLRQYEEAINCYTRA------IIKNPVIPSYFTNRALCYLKLKQ 63
           +NL        GN +  L Q+E+A   Y R       + +  V      +    Y  L +
Sbjct: 267 SNL--------GNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHE 318

Query: 64  YVHCCDDCRKALEL------EPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLS 112
           +    +   + L +           +A + LG A   I  ++ A+K+ ++   L+
Sbjct: 319 FNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLA 373

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 44.2 bits (105), Expect = 2e-05
 Identities = 19/117 (16%), Positives = 44/117 (37%), Gaps = 20/117 (17%)

Query: 10  NNLSDKELKDEGNRYFGLRQYEEAINCYTRAI-IK-----NPVIPSYFTNRALCYLKLKQ 63
            NL        GN Y+ L  ++ AI  +   + I              +N    ++ L Q
Sbjct: 227 GNL--------GNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQ 278

Query: 64  YVHCCDDCRKALEL------EPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSRE 114
           +    +  ++ L L           ++ + LG     ++ ++ A+++  R   +++E
Sbjct: 279 FEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQE 335

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 39.6 bits (93), Expect = 6e-04
 Identities = 17/123 (13%), Positives = 42/123 (34%), Gaps = 29/123 (23%)

Query: 21  GNRYFGLRQYEEAINCYTRAI-----IKN-PVIPSYFTNRALCYLKLKQYVHCCDDCRKA 74
           GN    + +++EA  C  R +     + +         N    Y    +++   +  +  
Sbjct: 133 GNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFG 192

Query: 75  LELEPSLVKAQFFLGQAL-----------------------HEINHYDEAVKHLQRAYDL 111
            +++ +L +A  F  + L                       + +  +  A++H Q    +
Sbjct: 193 DDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRI 252

Query: 112 SRE 114
           +RE
Sbjct: 253 ARE 255

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 39.6 bits (93), Expect = 7e-04
 Identities = 13/107 (12%), Positives = 29/107 (27%), Gaps = 10/107 (9%)

Query: 20  EGNRYFGLRQYEEAINCYTRAIIK------NPVIPSYFTNRALCYLKLKQYVHCCDDCRK 73
           E     GL       N +     +         +                        + 
Sbjct: 14  ENVSSLGLGSGGGGTNSHDGNSQQGSGSDGGSSMCLELALEGERLCNAGDCRAGVAFFQA 73

Query: 74  ALELE----PSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQN 116
           A++       +L      LG A   +  Y++A+++ +    L++  N
Sbjct: 74  AIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMN 120

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 46.5 bits (111), Expect = 3e-06
 Identities = 25/109 (22%), Positives = 41/109 (37%), Gaps = 10/109 (9%)

Query: 16  ELKDEGNRYFGLRQYEEAINCYTRAI-IKN---PVIPSYFTNRALCYLKLKQYVHCCDDC 71
           EL  EG R          ++ +  A+ +       + + ++     Y  L  Y    +  
Sbjct: 7   ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYH 66

Query: 72  RKALEL------EPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSRE 114
              L L      +    KA   LG  L  + ++DEA+   QR  D+SRE
Sbjct: 67  HHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRE 115

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 46.1 bits (110), Expect = 4e-06
 Identities = 24/106 (22%), Positives = 44/106 (41%), Gaps = 12/106 (11%)

Query: 21  GNRYFGLRQYEEAINCYTRAI-----IKN-PVIPSYFTNRALCYLKLKQYVHCCDDCRKA 74
           GN Y  L ++E A   Y + +     +K+  V      +    Y  L+ Y    D   K 
Sbjct: 230 GNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH 289

Query: 75  LEL------EPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSRE 114
           L +           +A + LG A   + ++D+A+   ++  ++SRE
Sbjct: 290 LAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 43.0 bits (102), Expect = 4e-05
 Identities = 16/106 (15%), Positives = 43/106 (40%), Gaps = 12/106 (11%)

Query: 21  GNRYFGLRQYEEAINCYTRAI-IK-----NPVIPSYFTNRALCYLKLKQYVHCCDDCRKA 74
           GN ++ L  + +A+  + + + I             ++N    Y+ L ++    +  +K 
Sbjct: 190 GNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKT 249

Query: 75  LEL------EPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSRE 114
           L L           ++ + LG     +  Y++A+ +  +   +++E
Sbjct: 250 LLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE 295

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382

 Score = 46.2 bits (109), Expect = 4e-06
 Identities = 11/81 (13%), Positives = 27/81 (33%)

Query: 28  RQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFF 87
           +   E +N  T  I + P     + +R +    L+      +     L  +     A   
Sbjct: 146 KDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQH 205

Query: 88  LGQALHEINHYDEAVKHLQRA 108
               + E   +D  ++++ + 
Sbjct: 206 RQWVIQEFKLWDNELQYVDQL 226

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382

 Score = 40.1 bits (93), Expect = 4e-04
 Identities = 9/88 (10%), Positives = 27/88 (30%), Gaps = 1/88 (1%)

Query: 27  LRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQF 86
           LR   + +      + ++      + +R     + K + +      + L+ +        
Sbjct: 179 LRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWN 238

Query: 87  FLGQALHEINHYDEAVKHLQRAYDLSRE 114
                +     Y++    L+R    + E
Sbjct: 239 QRYFVISNTTGYNDR-AVLEREVQYTLE 265

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 44.7 bits (105), Expect = 1e-05
 Identities = 9/87 (10%), Positives = 25/87 (28%)

Query: 22  NRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSL 81
           +   G  + ++A   +     K          +A C++   ++       ++AL+ +   
Sbjct: 174 SLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGH 233

Query: 82  VKAQFFLGQALHEINHYDEAVKHLQRA 108
            +    L      +    E        
Sbjct: 234 PETLINLVVLSQHLGKPPEVTNRYLSQ 260

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164

 Score = 43.3 bits (103), Expect = 1e-05
 Identities = 24/106 (22%), Positives = 44/106 (41%), Gaps = 12/106 (11%)

Query: 21  GNRYFGLRQYEEAINCYTRAI-----IKN-PVIPSYFTNRALCYLKLKQYVHCCDDCRKA 74
           GN Y  L ++E A   Y + +     +K+  V      +    Y  L+ Y    D   K 
Sbjct: 56  GNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH 115

Query: 75  LEL------EPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSRE 114
           L +           +A + LG A   + ++D+A+   ++  ++SRE
Sbjct: 116 LAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 161

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164

 Score = 39.4 bits (93), Expect = 3e-04
 Identities = 15/106 (14%), Positives = 41/106 (38%), Gaps = 12/106 (11%)

Query: 21  GNRYFGLRQYEEAINCYTRA------IIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKA 74
           GN ++ L  + +A+  + +                 ++N    Y+ L ++    +  +K 
Sbjct: 16  GNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKT 75

Query: 75  LEL------EPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSRE 114
           L L           ++ + LG     +  Y++A+ +  +   +++E
Sbjct: 76  LLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE 121

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score = 43.4 bits (103), Expect = 2e-05
 Identities = 17/113 (15%), Positives = 31/113 (27%), Gaps = 13/113 (11%)

Query: 21  GNRYFGLRQYEEAINCYTRAII-------KNPVIPSYFTNRALCYLKLKQYVHCCDDCRK 73
           G        ++ A  C+                  +     A   L          +  K
Sbjct: 73  GMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEK 132

Query: 74  ALEL------EPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNYG 120
           +L        + ++  A   LG    +  +  EA +H  RA D+  E   +  
Sbjct: 133 SLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAELEDSEA 185

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372

 Score = 44.3 bits (104), Expect = 2e-05
 Identities = 12/87 (13%), Positives = 26/87 (29%), Gaps = 3/87 (3%)

Query: 28  RQYEEAINCYTRA--IIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQ 85
           +Q             + +   +   +  +A+  L   +           ++LE S +   
Sbjct: 255 KQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWL-NY 313

Query: 86  FFLGQALHEINHYDEAVKHLQRAYDLS 112
             LG+         EA      A++L 
Sbjct: 314 VLLGKVYEMKGMNREAADAYLTAFNLR 340

>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A Length = 968

 Score = 44.0 bits (103), Expect = 3e-05
 Identities = 7/38 (18%), Positives = 17/38 (44%)

Query: 215 GHFDPVTRVKLSADQLIPNFAMKEVVDNFLQENDWAYE 252
              DP  R+ L  + + PN  +++ +  F ++     +
Sbjct: 926 DSTDPFNRMPLKLEDVTPNEELRQKILCFKKQKKEEAK 963

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 42.6 bits (100), Expect = 5e-05
 Identities = 10/109 (9%), Positives = 29/109 (26%), Gaps = 12/109 (11%)

Query: 20  EGNRYFGLRQYEEAINCYTRAII------KNPVIPSYFTNRALCYLKLKQYVHCCDDCRK 73
              +        +A++ Y +A        +           +   ++ +++       +K
Sbjct: 121 RAGKLMEPLDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQK 180

Query: 74  ALEL------EPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQN 116
              +       P+  K              Y  A K ++ +Y +     
Sbjct: 181 EKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESYSIPGFSG 229

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 40.3 bits (94), Expect = 3e-04
 Identities = 16/107 (14%), Positives = 30/107 (28%), Gaps = 11/107 (10%)

Query: 21  GNRYFGLRQYEEAINCYTRAIIKNPVIPSY------FTNRALCYLKLKQYVHCCDDCRKA 74
              +   +Q E+A + Y +    +    S       F    +    L++         KA
Sbjct: 43  AVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKA 102

Query: 75  LEL-----EPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQN 116
             +      P            L E     +AV   Q+A  +   + 
Sbjct: 103 SVMYVENGTPDTAAMALDRAGKLMEPLDLSKAVHLYQQAAAVFENEE 149

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99

 Score = 38.1 bits (89), Expect = 3e-04
 Identities = 15/85 (17%), Positives = 29/85 (34%), Gaps = 5/85 (5%)

Query: 16 ELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPS--YFTNRALCYLKLKQYVHCCDDCRK 73
          +              E A+      +   PV     Y+      Y KL  +    ++ + 
Sbjct: 2  DQLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYY-LMGNAYRKLGDWQKALNNYQS 60

Query: 74 ALELEP--SLVKAQFFLGQALHEIN 96
          A+EL P    ++A+  +   L+  N
Sbjct: 61 AIELNPDSPALQARKMVMDILNFYN 85

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	253
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	100.0
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.89
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.84
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.83
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.83
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.82
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.81
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.8
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.8
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.79
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.78
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.78
2f42_A	179	STIP1 homology and U-box containing protein 1; cha	99.76
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.76
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.74
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.74
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.73
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.73
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.72
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.72
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.71
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.71
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.71
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.7
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.69
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.69
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.69
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.68
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.68
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.68
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.68
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.68
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.68
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.68
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.66
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.65
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.65
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.64
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.64
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.64
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.63
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.62
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.62
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.62
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.61
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.6
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.58
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.58
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.57
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.57
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.57
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.57
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.56
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.56
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.56
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.56
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.56
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.55
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.55
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.55
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.55
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.55
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.54
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.54
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.54
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.54
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.54
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.54
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.53
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.53
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.53
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.53
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.52
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.52
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.52
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.51
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.51
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.51
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.51
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.5
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.49
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.49
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.49
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.49
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.48
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.48
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.47
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.46
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.45
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.45
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.45
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.45
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.45
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.44
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.44
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.43
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.43
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.42
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.42
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.42
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.42
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	99.41
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.41
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.41
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.39
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.39
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	99.38
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.38
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.38
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.38
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.37
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.37
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.36
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.36
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.36
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.35
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.34
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.33
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.33
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.31
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.31
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.31
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.3
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.3
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.3
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.3
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.29
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	99.29
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.29
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.28
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.28
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.27
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.27
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.27
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.26
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.25
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.24
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.24
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.24
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.24
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.24
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.24
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.23
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.23
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.23
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.22
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.21
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.2
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	99.2
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.19
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.19
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.18
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.18
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.18
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.18
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	99.18
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.17
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.17
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.16
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.15
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.15
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.15
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.14
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.14
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.14
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	99.13
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.12
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.12
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.11
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	99.1
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.1
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.1
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.09
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.09
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	99.09
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.09
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.08
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	99.06
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.05
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.05
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	99.02
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.01
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	99.01
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.99
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.99
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.98
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.97
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.97
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.95
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.93
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.93
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.9
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.87
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	98.81
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.8
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.79
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.77
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	98.72
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	98.68
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.66
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.63
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	98.6
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	98.58
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	98.56
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	98.48
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	98.46
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	98.44
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.36
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.32
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	98.29
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.28
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.25
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.24
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	98.23
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	98.2
1wgm_A	98	Ubiquitin conjugation factor E4A; ubiquitinating e	98.11
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	98.1
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	98.05
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	98.05
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	98.0
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	97.89
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	97.85
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	97.83
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	97.81
2kre_A	100	Ubiquitin conjugation factor E4 B; U-box domain, E	97.8
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	97.74
2kr4_A	85	Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri	97.7
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	97.67
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	97.65
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	97.57
3m62_A	968	Ubiquitin conjugation factor E4; armadillo-like re	97.42
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	97.19
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	96.97
1t1h_A	78	Gspef-atpub14, armadillo repeat containing protein	96.97
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	96.88
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	96.82
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	96.56
2yu4_A	94	E3 SUMO-protein ligase NSE2; SP-ring domain, struc	96.55
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	96.36
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	96.29
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	96.03
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	95.83
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	95.83
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	95.81
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	94.93
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	94.75
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	94.66
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	94.61
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	94.54
2bay_A	61	PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l	94.41
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	93.79
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	93.47
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	93.29
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	92.71
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	92.66
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	92.52
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	92.26
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	92.24
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	91.33
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	91.29
2crb_A	97	Nuclear receptor binding factor 2; NRBF-2, MIT dom	90.91
3lpz_A	336	GET4 (YOR164C homolog); protein targeting, tail-an	88.9
2kkx_A	102	Uncharacterized protein ECS2156; methods developme	88.6
1qsa_A	618	Protein (soluble lytic transglycosylase SLT70); al	87.49
3t5v_B	455	Nuclear mRNA export protein THP1; PCI, mRNA nuclea	87.18
2wpv_A	312	GET4, UPF0363 protein YOR164C; golgi-ER traffickin	86.94
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	86.8
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	83.88
2cpt_A	117	SKD1 protein, vacuolar sorting protein 4B; MIT, he	83.41
3ax2_A	73	Mitochondrial import receptor subunit TOM20 homol;	83.29
3t5x_A	203	PCI domain-containing protein 2; PCI, mRNA nuclear	82.75
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	82.31
2w2u_A	83	Hypothetical P60 katanin; hydrolase transport comp	82.04
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	82.02
3fau_A	82	NEDD4-binding protein 2; SMR, small-MUTS related d	81.77
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	81.59
2v6x_A	85	Vacuolar protein sorting-associated protein 4; pro	80.41
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	80.13

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=100.00  E-value=6.5e-33  Score=231.16  Aligned_cols=242  Identities=53%  Similarity=0.911  Sum_probs=208.6

Q ss_pred             cccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q psy11461         11 NLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQ   90 (253)
Q Consensus        11 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~   90 (253)
                      |..+..++.+|+.++..|+|++|+..|++++..+|.++.++.++|.+|..+|++++|+.++++++.++|++..+++.+|.
T Consensus         1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~   80 (281)
T 2c2l_A            1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ   80 (281)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            45688999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCHHHHHHHHHHHHhhchhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy11461         91 ALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIACQLRIAKKKRWAETEEKRIAQEIELLTYLNRLITEDAEKELGSIRR  170 (253)
Q Consensus        91 ~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~  170 (253)
                      ++..+|++++|+..|+++++++|++...+...+...+...+...|......+...++++..++..++....++.+..+..
T Consensus        81 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~A~~~~~~  160 (281)
T 2c2l_A           81 CQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIEERRIHQESELHSYLTRLIAAERERELEECQR  160 (281)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHHHHHHHHHHTTTSG
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999988777788888888898889988877777778889999988887777777776665


Q ss_pred             hhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchh-------------------------------------
Q psy11461        171 DAETKRLDGDAVQEAVMRIEARRDRSMAELNDLFVAIDERRRK-------------------------------------  213 (253)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~-------------------------------------  213 (253)
                      .....+ ++..+...+..+....+....++.++|..+.+....                                     
T Consensus       161 al~~~p-~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~~~~~~~~~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~  239 (281)
T 2c2l_A          161 NHEGHE-DDGHIRAQQACIEAKHDKYMADMDELFSQVDEKRKKRDIPDYLCGKISFELMREPCITPSGITYDRKDIEEHL  239 (281)
T ss_dssp             GGTTTS-CHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCTTSCCCCCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHH
T ss_pred             hhcccc-chhhhhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcccCCcCcCCHhcCCeECCCCCEECHHHHHHHH
Confidence            443332 222234445556666767788899999765442221                                     


Q ss_pred             --cCCCCCCCCCCCCCCCCcCcHHHHHHHHHHhhhcCcccCC
Q psy11461        214 --VGHFDPVTRVKLSADQLIPNFAMKEVVDNFLQENDWAYEY  253 (253)
Q Consensus       214 --~g~~DP~tr~~l~~~~l~pN~~lk~a~~~~l~~n~wa~~~  253 (253)
                        .|.++|+||+|++..+|+||..|+++|+.|+.+|||++||
T Consensus       240 ~~~~~~cP~~~~~~~~~~l~~n~~l~~~i~~~~~~~~~~~~~  281 (281)
T 2c2l_A          240 QRVGHFNPVTRSPLTQEQLIPNLAMKEVIDAFISENGWVEDY  281 (281)
T ss_dssp             HHTCSSCTTTCCCCCGGGCEECHHHHHHHHHHHTTCSCSSCC
T ss_pred             HHCCCCCcCCCCCCchhcCcccHHHHHHHHHHHHHCCCCCCC
Confidence              4557999999999999999999999999999999999998

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.89  E-value=6.5e-22  Score=145.08  Aligned_cols=112  Identities=23%  Similarity=0.433  Sum_probs=106.7

Q ss_pred             CCCCCCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHH
Q psy11461          5 HNFTTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKA   84 (253)
Q Consensus         5 ~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a   84 (253)
                      ++..-+|..+..++++|+.+++.|+|++|+.+|++++..+|.++.+|.++|.||..+|++++|+.+|+++++++|+++.+
T Consensus         4 r~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a   83 (126)
T 4gco_A            4 RLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKG   83 (126)
T ss_dssp             ---CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHH
Confidence            34556899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHhhchhcc
Q psy11461         85 QFFLGQALHEINHYDEAVKHLQRAYDLSREQN  116 (253)
Q Consensus        85 ~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~  116 (253)
                      |+++|.++..+|++++|+..|+++++++|++.
T Consensus        84 ~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~  115 (126)
T 4gco_A           84 YIRKAACLVAMREWSKAQRAYEDALQVDPSNE  115 (126)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCH
Confidence            99999999999999999999999999999984

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.84  E-value=7.6e-20  Score=138.31  Aligned_cols=112  Identities=14%  Similarity=0.089  Sum_probs=107.9

Q ss_pred             CCCCCCCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHH
Q psy11461          4 SHNFTTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVK   83 (253)
Q Consensus         4 ~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~   83 (253)
                      .+...-+|..+..++.+|..++..|+|++|+..|++++..+|.++.+|.++|.||..+|++++|+..|++++.++|+++.
T Consensus        26 ~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~  105 (151)
T 3gyz_A           26 KDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYT  105 (151)
T ss_dssp             GGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCH
T ss_pred             HHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcH
Confidence            34566789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461         84 AQFFLGQALHEINHYDEAVKHLQRAYDLSREQ  115 (253)
Q Consensus        84 a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~  115 (253)
                      +++++|.++..+|++++|+..|++++++.|+.
T Consensus       106 ~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~  137 (151)
T 3gyz_A          106 PVFHTGQCQLRLKAPLKAKECFELVIQHSNDE  137 (151)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCH
Confidence            99999999999999999999999999999985

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.83  E-value=4.5e-19  Score=130.33  Aligned_cols=131  Identities=56%  Similarity=0.947  Sum_probs=121.0

Q ss_pred             CCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHH
Q psy11461          9 TNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFL   88 (253)
Q Consensus         9 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l   88 (253)
                      .++..+..++.+|..++..|+|++|+.+|.+++..+|.++.++.++|.++..+|++++|+..+++++.++|+++.+++.+
T Consensus         4 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l   83 (137)
T 3q49_B            4 MKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL   83 (137)
T ss_dssp             --CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHH
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCHHHHHHHHHHHHhhchhcccchHHHHHHHHHHHHHHHHHHHH
Q psy11461         89 GQALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIACQLRIAKKKRWAETE  139 (253)
Q Consensus        89 g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (253)
                      |.++..+|++++|+..|+++++++|++...+...+...+..+....|...+
T Consensus        84 ~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~e  134 (137)
T 3q49_B           84 GQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIE  134 (137)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999997666678888888888877776543

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.83  E-value=1e-19  Score=137.34  Aligned_cols=106  Identities=16%  Similarity=0.146  Sum_probs=100.7

Q ss_pred             ccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCC-------CHH-----HHHHHHHHHHHhhCHHHHHHHHHHHHhh--
Q psy11461         12 LSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPV-------IPS-----YFTNRALCYLKLKQYVHCCDDCRKALEL--   77 (253)
Q Consensus        12 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~-------~~~-----~~~~~a~~~~~~~~~~~A~~~~~~al~l--   77 (253)
                      ..+..++..|+.++..|+|++|+.+|++||.++|+       +..     +|.|+|.|+.++|+|++|+.+|++||++  
T Consensus         9 ~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n   88 (159)
T 2hr2_A            9 VGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFN   88 (159)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhh
Confidence            35778999999999999999999999999999999       544     9999999999999999999999999999  


Q ss_pred             -----CCCcHHHH----HHHHHHHHHhCCHHHHHHHHHHHHhhchhccc
Q psy11461         78 -----EPSLVKAQ----FFLGQALHEINHYDEAVKHLQRAYDLSREQNL  117 (253)
Q Consensus        78 -----~p~~~~a~----~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~~  117 (253)
                           +|++.++|    +++|.++..+|++++|+.+|+++++++|++..
T Consensus        89 ~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~  137 (159)
T 2hr2_A           89 RRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKG  137 (159)
T ss_dssp             HHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCS
T ss_pred             ccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHH
Confidence                 99999999    99999999999999999999999999999854

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.82  E-value=1.1e-18  Score=126.96  Aligned_cols=104  Identities=28%  Similarity=0.456  Sum_probs=100.9

Q ss_pred             cccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q psy11461         11 NLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQ   90 (253)
Q Consensus        11 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~   90 (253)
                      |..+..++.+|..++..|+|++|+..|.+++..+|.++.++.++|.++..+|++++|+.++++++.++|++..+++.+|.
T Consensus         1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~   80 (126)
T 3upv_A            1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKAT   80 (126)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence            45688999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCHHHHHHHHHHHHhhchh
Q psy11461         91 ALHEINHYDEAVKHLQRAYDLSRE  114 (253)
Q Consensus        91 ~~~~~~~~~~A~~~~~~al~l~p~  114 (253)
                      ++..+|++++|+..|+++++++|+
T Consensus        81 ~~~~~~~~~~A~~~~~~al~~~p~  104 (126)
T 3upv_A           81 AQIAVKEYASALETLDAARTKDAE  104 (126)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCHHHHHHHHHHHHHhCcc
Confidence            999999999999999999999954

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.81  E-value=2.3e-19  Score=131.53  Aligned_cols=104  Identities=27%  Similarity=0.420  Sum_probs=98.6

Q ss_pred             cccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCc-------HH
Q psy11461         11 NLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSL-------VK   83 (253)
Q Consensus        11 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~-------~~   83 (253)
                      ++.+.+++++|+.+++.|+|++|+.+|++|+.++|.++.+|.++|.||..+|+|++|+.+|.+++.++|++       ..
T Consensus         5 ~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~   84 (127)
T 4gcn_A            5 TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAK   84 (127)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHH
Confidence            56788999999999999999999999999999999999999999999999999999999999999998875       36


Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHhhchh
Q psy11461         84 AQFFLGQALHEINHYDEAVKHLQRAYDLSRE  114 (253)
Q Consensus        84 a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~  114 (253)
                      +++++|.++..+|++++|+..|++++...|+
T Consensus        85 ~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~  115 (127)
T 4gcn_A           85 AMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD  115 (127)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence            8999999999999999999999999998876

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.80  E-value=1.1e-18  Score=132.65  Aligned_cols=108  Identities=23%  Similarity=0.305  Sum_probs=101.8

Q ss_pred             CCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHh------------------CCCCHHHHHHHHHHHHHhhCHHHHHHH
Q psy11461          9 TNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIK------------------NPVIPSYFTNRALCYLKLKQYVHCCDD   70 (253)
Q Consensus         9 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~------------------~p~~~~~~~~~a~~~~~~~~~~~A~~~   70 (253)
                      .....+..++..|+.++..|+|++|+..|++++..                  +|.++.+|.++|.||.++|+|++|+.+
T Consensus         6 e~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~   85 (162)
T 3rkv_A            6 DKLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEET   85 (162)
T ss_dssp             --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence            34457889999999999999999999999999999                  777789999999999999999999999


Q ss_pred             HHHHHhhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhcc
Q psy11461         71 CRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQN  116 (253)
Q Consensus        71 ~~~al~l~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~  116 (253)
                      |.+++.++|+++.+++++|.++..+|++++|+..|+++++++|++.
T Consensus        86 ~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~  131 (162)
T 3rkv_A           86 SSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA  131 (162)
T ss_dssp             HHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred             HHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence            9999999999999999999999999999999999999999999973

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.80  E-value=5.8e-18  Score=128.86  Aligned_cols=112  Identities=26%  Similarity=0.375  Sum_probs=107.2

Q ss_pred             CCCCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHH
Q psy11461          7 FTTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQF   86 (253)
Q Consensus         7 ~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~   86 (253)
                      ....+..+..++.+|..++..|+|++|+.+|.+++..+|.++.++.++|.+|..+|++++|+.+|++++.++|++..+++
T Consensus         4 ~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~   83 (164)
T 3sz7_A            4 SMAPTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWS   83 (164)
T ss_dssp             CSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             cchhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHH
Confidence            34667889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCHHHHHHHHHHHHhhchhcccc
Q psy11461         87 FLGQALHEINHYDEAVKHLQRAYDLSREQNLN  118 (253)
Q Consensus        87 ~lg~~~~~~~~~~~A~~~~~~al~l~p~~~~~  118 (253)
                      .+|.++..+|++++|+..|+++++++|++...
T Consensus        84 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~  115 (164)
T 3sz7_A           84 RLGLARFDMADYKGAKEAYEKGIEAEGNGGSD  115 (164)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCH
T ss_pred             HHHHHHHHccCHHHHHHHHHHHHHhCCCchHH
Confidence            99999999999999999999999999998553

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.79  E-value=6.4e-18  Score=125.80  Aligned_cols=112  Identities=13%  Similarity=0.127  Sum_probs=107.6

Q ss_pred             CCCCCCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHH
Q psy11461          5 HNFTTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKA   84 (253)
Q Consensus         5 ~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a   84 (253)
                      +....+|..+..++.+|..++..|+|++|+..|.+++..+|.++.+|.++|.++..+|++++|+.+|++++.++|+++.+
T Consensus         9 ~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~   88 (142)
T 2xcb_A            9 MLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRF   88 (142)
T ss_dssp             CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHH
T ss_pred             HHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHH
Confidence            45567788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHhhchhcc
Q psy11461         85 QFFLGQALHEINHYDEAVKHLQRAYDLSREQN  116 (253)
Q Consensus        85 ~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~  116 (253)
                      ++.+|.++..+|++++|+..|+++++++|+++
T Consensus        89 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~  120 (142)
T 2xcb_A           89 PFHAAECHLQLGDLDGAESGFYSARALAAAQP  120 (142)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCG
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Confidence            99999999999999999999999999999874

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.78  E-value=5.7e-18  Score=127.37  Aligned_cols=111  Identities=14%  Similarity=0.115  Sum_probs=106.4

Q ss_pred             CCCCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHH
Q psy11461          7 FTTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQF   86 (253)
Q Consensus         7 ~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~   86 (253)
                      ...+|..+..++.+|..++..|+|++|+..|.+++..+|.++.+|.++|.++..+|++++|+..|++++.++|+++.+++
T Consensus        14 l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~   93 (148)
T 2vgx_A           14 NEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPF   93 (148)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHH
T ss_pred             HcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHH
Confidence            44578889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCHHHHHHHHHHHHhhchhccc
Q psy11461         87 FLGQALHEINHYDEAVKHLQRAYDLSREQNL  117 (253)
Q Consensus        87 ~lg~~~~~~~~~~~A~~~~~~al~l~p~~~~  117 (253)
                      .+|.++..+|++++|+..|+++++++|+++.
T Consensus        94 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~  124 (148)
T 2vgx_A           94 HAAECLLQXGELAEAESGLFLAQELIANXPE  124 (148)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHTTCGG
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHCcCCCc
Confidence            9999999999999999999999999998643

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.78  E-value=1e-18  Score=131.73  Aligned_cols=111  Identities=15%  Similarity=0.095  Sum_probs=103.5

Q ss_pred             CCCCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHH
Q psy11461          7 FTTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQF   86 (253)
Q Consensus         7 ~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~   86 (253)
                      .+.+|..+..++.+|..|+..|+|++|+.+|.+++.++|+++.+|.++|.+|..+|++++|+..|+++++++|+++.+++
T Consensus        24 ~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  103 (150)
T 4ga2_A           24 TPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVL  103 (150)
T ss_dssp             SCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             cccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHH
Confidence            34567788889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCHHHHHHH-HHHHHhhchhccc
Q psy11461         87 FLGQALHEINHYDEAVKH-LQRAYDLSREQNL  117 (253)
Q Consensus        87 ~lg~~~~~~~~~~~A~~~-~~~al~l~p~~~~  117 (253)
                      .+|.++..+|++++|... +++|++++|+++.
T Consensus       104 ~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~  135 (150)
T 4ga2_A          104 KIAELLCKNDVTDGRAKYWVERAAKLFPGSPA  135 (150)
T ss_dssp             HHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHH
T ss_pred             HHHHHHHHcCChHHHHHHHHHHHHHhCcCCHH
Confidence            999999999999887766 5899999999843

>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C

Probab=99.76  E-value=1.2e-18  Score=133.36  Aligned_cols=132  Identities=50%  Similarity=0.893  Sum_probs=90.8

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHHHHHHH
Q psy11461        117 LNYGDDIACQLRIAKKKRWAETEEKRIAQEIELLTYLNRLITEDAEKELGSIRRDAETKRLDGDAVQEAVMRIEARRDRS  196 (253)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (253)
                      ..+.++|+..++++++..|...+++|+.+..++..++..++..+.++++.++......     .+..+...++..+++..
T Consensus         9 ~~~~~~I~~~l~~aKk~~w~~~e~~r~~~~~~l~~~~~~l~~~~~~~~l~~~~~~~~~-----~~~~~~~~~~~~~~~~~   83 (179)
T 2f42_A            9 LNFGDDIPSALRIAKKKRWNSIEEKRISQENELHAYLSKLILAEKERELDDRVKQSDD-----SQNGGDISKMKSKHDKY   83 (179)
T ss_dssp             -------------CCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-----------------------CHHHHH
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-----hhhhHHHHHHHHHHHHH
Confidence            3578999999999999999999999999999999999999999999998877654322     12234455577788889


Q ss_pred             HHHHHHHHHHHHhhchh---------------------------------------cCCCCCCCCCCCCCCCCcCcHHHH
Q psy11461        197 MAELNDLFVAIDERRRK---------------------------------------VGHFDPVTRVKLSADQLIPNFAMK  237 (253)
Q Consensus       197 ~~~~~~~f~~~~~~~~~---------------------------------------~g~~DP~tr~~l~~~~l~pN~~lk  237 (253)
                      +.++.++|+.+.+....                                       +|.+||+||+|++..+|+||.+||
T Consensus        84 i~~~~~l~~~~~~~~~~~~ip~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L~pN~~Lk  163 (179)
T 2f42_A           84 LMDMDELFSQVDEKRKKREIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNLAMK  163 (179)
T ss_dssp             HHHHHHHHHHHHHGGGCCCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECHHHH
T ss_pred             HHHHHHHHHHHhhhccccCCcHhhcccCccccCCCCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChhhCcchHHHH
Confidence            99999999877654322                                       466899999999999999999999


Q ss_pred             HHHHHHhhhcCcccCC
Q psy11461        238 EVVDNFLQENDWAYEY  253 (253)
Q Consensus       238 ~a~~~~l~~n~wa~~~  253 (253)
                      ++|+.|+.+||||+||
T Consensus       164 ~~Ie~~~~~~~~~~d~  179 (179)
T 2f42_A          164 EVIDAFIQENGWVEDY  179 (179)
T ss_dssp             HHHHHHHHHCTTCC--
T ss_pred             HHHHHHHHHCCCcCCC
Confidence            9999999999999998

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.76  E-value=9.1e-18  Score=156.14  Aligned_cols=143  Identities=13%  Similarity=0.123  Sum_probs=124.1

Q ss_pred             CCCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHH
Q psy11461          8 TTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFF   87 (253)
Q Consensus         8 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~   87 (253)
                      +..|..+.++.++|+.+...|++++|+.+|++|++++|+++.++.++|.+|.++|++++|+..|++|++++|++..++++
T Consensus         3 gs~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~n   82 (723)
T 4gyw_A            3 GSCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSN   82 (723)
T ss_dssp             ---CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            35788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCHHHHHHHHHHHHhhchhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11461         88 LGQALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIACQLRIAKKKRWAETEEKRIAQEIELL  150 (253)
Q Consensus        88 lg~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (253)
                      +|.++..+|++++|++.|++|++++|++...+...........+...+....++.+...|...
T Consensus        83 Lg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~  145 (723)
T 4gyw_A           83 MGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFP  145 (723)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Confidence            999999999999999999999999999877666655555555555555555556666555433

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.74  E-value=1e-16  Score=127.84  Aligned_cols=131  Identities=15%  Similarity=0.174  Sum_probs=100.7

Q ss_pred             cccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q psy11461         11 NLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQ   90 (253)
Q Consensus        11 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~   90 (253)
                      |.++..++.+|..++..|++++|+..|++++..+|.++.++.++|.++..+|++++|+..++++++++|++..+++.+|.
T Consensus         2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~   81 (217)
T 2pl2_A            2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSE   81 (217)
T ss_dssp             --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence            45567788888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHh-----------CCHHHHHHHHHHHHhhchhcccchHHHHHHHHHHHHHHHHHHHHHH
Q psy11461         91 ALHEI-----------NHYDEAVKHLQRAYDLSREQNLNYGDDIACQLRIAKKKRWAETEEK  141 (253)
Q Consensus        91 ~~~~~-----------~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (253)
                      ++..+           |++++|+..|+++++++|++...+...........+........++
T Consensus        82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~  143 (217)
T 2pl2_A           82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQ  143 (217)
T ss_dssp             HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence            88888           8888888888888888888765554444444444444444333333

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.74  E-value=1.9e-15  Score=120.62  Aligned_cols=106  Identities=18%  Similarity=0.219  Sum_probs=102.1

Q ss_pred             cccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q psy11461         11 NLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNP-VIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLG   89 (253)
Q Consensus        11 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg   89 (253)
                      +.++..++..|..++..|+|++|+..|.+++..+| .+..+++++|.++..+|++++|+..+.+++.++|++..+++.+|
T Consensus         4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~   83 (228)
T 4i17_A            4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKS   83 (228)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence            44568999999999999999999999999999999 89999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCHHHHHHHHHHHHhhchhcc
Q psy11461         90 QALHEINHYDEAVKHLQRAYDLSREQN  116 (253)
Q Consensus        90 ~~~~~~~~~~~A~~~~~~al~l~p~~~  116 (253)
                      .++..+|++++|+..|+++++++|++.
T Consensus        84 ~~~~~~~~~~~A~~~~~~al~~~p~~~  110 (228)
T 4i17_A           84 AAYRDMKNNQEYIATLTEGIKAVPGNA  110 (228)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSTTCH
T ss_pred             HHHHHcccHHHHHHHHHHHHHHCCCcH
Confidence            999999999999999999999999975

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.73  E-value=5e-17  Score=117.95  Aligned_cols=101  Identities=14%  Similarity=0.073  Sum_probs=94.2

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q psy11461         15 KELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHE   94 (253)
Q Consensus        15 ~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~   94 (253)
                      ..++.+|..++..|++++|+..|.+++..+|.++.+|+++|.++..+|++++|+..+++++.++|++..+++.+|.++..
T Consensus        18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~   97 (121)
T 1hxi_A           18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN   97 (121)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            45889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCHHHHHHHHHHHHhhchhc
Q psy11461         95 INHYDEAVKHLQRAYDLSREQ  115 (253)
Q Consensus        95 ~~~~~~A~~~~~~al~l~p~~  115 (253)
                      .|++++|+..|+++++++|++
T Consensus        98 ~g~~~~A~~~~~~al~~~P~~  118 (121)
T 1hxi_A           98 EHNANAALASLRAWLLSQPQY  118 (121)
T ss_dssp             HHHHHHHHHHHHHHHC-----
T ss_pred             cCCHHHHHHHHHHHHHhCcCC
Confidence            999999999999999999986

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.73  E-value=8.6e-17  Score=128.31  Aligned_cols=112  Identities=13%  Similarity=0.095  Sum_probs=105.9

Q ss_pred             CCCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh-----------hCHHHHHHHHHHHHh
Q psy11461          8 TTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKL-----------KQYVHCCDDCRKALE   76 (253)
Q Consensus         8 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~-----------~~~~~A~~~~~~al~   76 (253)
                      ..+|..+..++.+|..+...|++++|+..|++++..+|+++.++.++|.++..+           |++++|+..++++++
T Consensus        33 ~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~  112 (217)
T 2pl2_A           33 KENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAER  112 (217)
T ss_dssp             TTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHH
Confidence            457889999999999999999999999999999999999999999999999999           999999999999999


Q ss_pred             hCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhcccchH
Q psy11461         77 LEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNYG  120 (253)
Q Consensus        77 l~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~  120 (253)
                      ++|++..+++.+|.++..+|++++|+..|+++++++ ++...+.
T Consensus       113 ~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~  155 (217)
T 2pl2_A          113 VNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRS  155 (217)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHH
T ss_pred             hCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHH
Confidence            999999999999999999999999999999999999 6544433

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.72  E-value=1.4e-16  Score=148.25  Aligned_cols=119  Identities=14%  Similarity=0.161  Sum_probs=110.4

Q ss_pred             CCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHH
Q psy11461          9 TNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFL   88 (253)
Q Consensus         9 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l   88 (253)
                      -+|..+.++.++|..+...|++++|+.+|++|++++|+++.+|+++|.+|..+|++++|+..|++|++++|++..+++++
T Consensus        38 l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~L  117 (723)
T 4gyw_A           38 VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNL  117 (723)
T ss_dssp             HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            35788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCHHHHHHHHHHHHhhchhcccchHHHHHHHH
Q psy11461         89 GQALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIACQL  127 (253)
Q Consensus        89 g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~  127 (253)
                      |.++..+|++++|+..|++|++++|++...+........
T Consensus       118 g~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~  156 (723)
T 4gyw_A          118 ASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQ  156 (723)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHH
Confidence            999999999999999999999999998665554444333

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.72  E-value=4e-16  Score=113.18  Aligned_cols=113  Identities=31%  Similarity=0.516  Sum_probs=107.6

Q ss_pred             CCCCCCCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHH
Q psy11461          4 SHNFTTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVK   83 (253)
Q Consensus         4 ~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~   83 (253)
                      ....+..+..+.+++.+|..++..|+|++|+..|.+++..+|.++.++.++|.++...|++++|+..+++++.++|.+..
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~   85 (133)
T 2lni_A            6 HHHSHMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIK   85 (133)
T ss_dssp             CTTCCSSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             CCCCCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchH
Confidence            34455778899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHhhchhcc
Q psy11461         84 AQFFLGQALHEINHYDEAVKHLQRAYDLSREQN  116 (253)
Q Consensus        84 a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~  116 (253)
                      +++.+|.++..+|++++|+..|.++++++|.+.
T Consensus        86 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~  118 (133)
T 2lni_A           86 GYTRKAAALEAMKDYTKAMDVYQKALDLDSSCK  118 (133)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGT
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCch
Confidence            999999999999999999999999999999874

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.71  E-value=3.2e-16  Score=124.12  Aligned_cols=113  Identities=14%  Similarity=0.049  Sum_probs=105.6

Q ss_pred             cHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHH----------------HHHHHHHhhCHHHHHHHHHHHHh
Q psy11461         13 SDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTN----------------RALCYLKLKQYVHCCDDCRKALE   76 (253)
Q Consensus        13 ~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~----------------~a~~~~~~~~~~~A~~~~~~al~   76 (253)
                      .+..++..|..++..|+|++|+.+|.+++..+|+++.+++.                +|.+|..+|++++|+..|+++++
T Consensus         3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~   82 (208)
T 3urz_A            3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ   82 (208)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            57788999999999999999999999999999999999999                99999999999999999999999


Q ss_pred             hCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhcccchHHHHHH
Q psy11461         77 LEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIAC  125 (253)
Q Consensus        77 l~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~  125 (253)
                      ++|+++.+++.+|.++..+|++++|+..|+++++++|++...+......
T Consensus        83 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~  131 (208)
T 3urz_A           83 KAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNY  131 (208)
T ss_dssp             HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence            9999999999999999999999999999999999999986655444433

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.71  E-value=4.9e-16  Score=119.86  Aligned_cols=112  Identities=19%  Similarity=0.217  Sum_probs=104.5

Q ss_pred             ccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q psy11461         12 LSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQA   91 (253)
Q Consensus        12 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~   91 (253)
                      +++..|+++|..++..|+|++|+..|++++..+|+++.++.++|.+|..+|++++|+..+.+++..+|++..++..+|.+
T Consensus         3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~   82 (184)
T 3vtx_A            3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSA   82 (184)
T ss_dssp             -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence            46889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCHHHHHHHHHHHHhhchhcccchHHHH
Q psy11461         92 LHEINHYDEAVKHLQRAYDLSREQNLNYGDDI  123 (253)
Q Consensus        92 ~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~  123 (253)
                      +...++++.|...+.+++.++|.+...+....
T Consensus        83 ~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg  114 (184)
T 3vtx_A           83 NFMIDEKQAAIDALQRAIALNTVYADAYYKLG  114 (184)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCccchHHHHHHH
Confidence            99999999999999999999999855443333

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.71  E-value=4.6e-16  Score=132.40  Aligned_cols=108  Identities=24%  Similarity=0.344  Sum_probs=103.6

Q ss_pred             CcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHhhCHHHHHHHHHHH
Q psy11461         10 NNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVI---------------PSYFTNRALCYLKLKQYVHCCDDCRKA   74 (253)
Q Consensus        10 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~---------------~~~~~~~a~~~~~~~~~~~A~~~~~~a   74 (253)
                      .|..+..++.+|+.++..|+|++|+.+|.+++.++|.+               +.++.++|.||.++|++++|+.+|+++
T Consensus       143 ~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a  222 (336)
T 1p5q_A          143 KLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKA  222 (336)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            45678899999999999999999999999999999999               699999999999999999999999999


Q ss_pred             HhhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhccc
Q psy11461         75 LELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNL  117 (253)
Q Consensus        75 l~l~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~~  117 (253)
                      +.++|++..+++++|.++..+|++++|+..|+++++++|++..
T Consensus       223 l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~  265 (336)
T 1p5q_A          223 LELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKA  265 (336)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHH
T ss_pred             HHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHH
Confidence            9999999999999999999999999999999999999998743

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.70  E-value=6.5e-16  Score=136.84  Aligned_cols=108  Identities=24%  Similarity=0.417  Sum_probs=100.2

Q ss_pred             CcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHhhCHHHHHHHHHHH
Q psy11461         10 NNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVI---------------PSYFTNRALCYLKLKQYVHCCDDCRKA   74 (253)
Q Consensus        10 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~---------------~~~~~~~a~~~~~~~~~~~A~~~~~~a   74 (253)
                      .+..+..++.+|+.++..|+|.+|+.+|.+|+.++|.+               ..+|.++|.||.++|+|++|+.+|.+|
T Consensus       264 ~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a  343 (457)
T 1kt0_A          264 KLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKA  343 (457)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            35678899999999999999999999999999999998               699999999999999999999999999


Q ss_pred             HhhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhccc
Q psy11461         75 LELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNL  117 (253)
Q Consensus        75 l~l~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~~  117 (253)
                      +.++|++..+++++|.++..+|++++|+..|++|++++|++..
T Consensus       344 l~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~  386 (457)
T 1kt0_A          344 LGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKA  386 (457)
T ss_dssp             HHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----C
T ss_pred             HhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH
Confidence            9999999999999999999999999999999999999999854

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.69  E-value=1.2e-16  Score=138.30  Aligned_cols=116  Identities=8%  Similarity=-0.037  Sum_probs=81.8

Q ss_pred             CCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhC-HHHHHHHHHHHHhhCCCcHHHHHH
Q psy11461          9 TNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQ-YVHCCDDCRKALELEPSLVKAQFF   87 (253)
Q Consensus         9 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~-~~~A~~~~~~al~l~p~~~~a~~~   87 (253)
                      -+|..+.++..+|..+...|++++|+..|.++|.++|.++.+|+++|.++..+|+ +++|+.+|++++.++|++..+|++
T Consensus        92 ~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~  171 (382)
T 2h6f_A           92 YSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHH  171 (382)
T ss_dssp             CCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence            3455666777777777777777777777777777777777777777777777775 777777777777777777777777


Q ss_pred             HHHHHHHhCCHHHHHHHHHHHHhhchhcccchHHHHH
Q psy11461         88 LGQALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIA  124 (253)
Q Consensus        88 lg~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~  124 (253)
                      +|.++..+|++++|+.+|+++++++|++...+.....
T Consensus       172 ~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~  208 (382)
T 2h6f_A          172 RRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQW  208 (382)
T ss_dssp             HHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHH
Confidence            7777777777777777777777777776554443333

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.69  E-value=7.4e-15  Score=110.60  Aligned_cols=106  Identities=26%  Similarity=0.470  Sum_probs=102.3

Q ss_pred             cccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q psy11461         11 NLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQ   90 (253)
Q Consensus        11 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~   90 (253)
                      ...+..++.+|..++..|+|+.|+..|.+++..+|.++.++.++|.++..+|++++|+..+.+++.++|.+..+++.+|.
T Consensus        10 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~   89 (166)
T 1a17_A           10 LKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAA   89 (166)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence            35678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCHHHHHHHHHHHHhhchhcc
Q psy11461         91 ALHEINHYDEAVKHLQRAYDLSREQN  116 (253)
Q Consensus        91 ~~~~~~~~~~A~~~~~~al~l~p~~~  116 (253)
                      ++..+|++++|+..|.++++++|.+.
T Consensus        90 ~~~~~~~~~~A~~~~~~a~~~~p~~~  115 (166)
T 1a17_A           90 SNMALGKFRAALRDYETVVKVKPHDK  115 (166)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHSTTCH
T ss_pred             HHHHhccHHHHHHHHHHHHHhCCCCH
Confidence            99999999999999999999999874

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.69  E-value=3.4e-15  Score=105.62  Aligned_cols=104  Identities=25%  Similarity=0.435  Sum_probs=101.0

Q ss_pred             cHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q psy11461         13 SDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQAL   92 (253)
Q Consensus        13 ~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~   92 (253)
                      .+..++.+|..++..|++++|+..|.+++..+|.++.++.++|.++..+|++++|+..+.+++.++|.+..+++.+|.++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~   82 (118)
T 1elw_A            3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL   82 (118)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            57789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhCCHHHHHHHHHHHHhhchhcc
Q psy11461         93 HEINHYDEAVKHLQRAYDLSREQN  116 (253)
Q Consensus        93 ~~~~~~~~A~~~~~~al~l~p~~~  116 (253)
                      ..+|++++|+..+.++++++|++.
T Consensus        83 ~~~~~~~~A~~~~~~~~~~~~~~~  106 (118)
T 1elw_A           83 EFLNRFEEAKRTYEEGLKHEANNP  106 (118)
T ss_dssp             HHTTCHHHHHHHHHHHHTTCTTCH
T ss_pred             HHHhhHHHHHHHHHHHHHcCCCCH
Confidence            999999999999999999999873

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.68  E-value=2.6e-15  Score=111.00  Aligned_cols=109  Identities=33%  Similarity=0.435  Sum_probs=104.4

Q ss_pred             CCCCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHH
Q psy11461          7 FTTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVI---PSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVK   83 (253)
Q Consensus         7 ~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~   83 (253)
                      ....+..+..++.+|..++..|+|++|+..|.+++..+|.+   ..++.++|.++..+|++++|+..+.+++.++|++..
T Consensus        21 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~  100 (148)
T 2dba_A           21 ATPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVK  100 (148)
T ss_dssp             CCTTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHH
T ss_pred             CccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHH
Confidence            33557889999999999999999999999999999999998   899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461         84 AQFFLGQALHEINHYDEAVKHLQRAYDLSREQ  115 (253)
Q Consensus        84 a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~  115 (253)
                      +++.+|.++..+|++++|+..|+++++++|++
T Consensus       101 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~  132 (148)
T 2dba_A          101 ALYRRSQALEKLGRLDQAVLDLQRCVSLEPKN  132 (148)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSC
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence            99999999999999999999999999999987

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.68  E-value=1.8e-15  Score=120.78  Aligned_cols=113  Identities=14%  Similarity=0.159  Sum_probs=104.1

Q ss_pred             ccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcH-------HH
Q psy11461         12 LSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLV-------KA   84 (253)
Q Consensus        12 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~-------~a   84 (253)
                      .+...++.+|.+++..|++++|+..|.+++..+|.++.++.++|.+|..+|++++|+..+++++.++|++.       .+
T Consensus        40 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~  119 (228)
T 4i17_A           40 QDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIY  119 (228)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHH
Confidence            56678888999999999999999999999999999999999999999999999999999999999999998       67


Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHhhchh--cccchHHHHH
Q psy11461         85 QFFLGQALHEINHYDEAVKHLQRAYDLSRE--QNLNYGDDIA  124 (253)
Q Consensus        85 ~~~lg~~~~~~~~~~~A~~~~~~al~l~p~--~~~~~~~~~~  124 (253)
                      ++.+|.++..+|++++|+..|+++++++|+  +...+.....
T Consensus       120 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~  161 (228)
T 4i17_A          120 YLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGV  161 (228)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred             HHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHH
Confidence            999999999999999999999999999999  6544443333

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.68  E-value=3.7e-15  Score=114.90  Aligned_cols=128  Identities=11%  Similarity=0.136  Sum_probs=111.5

Q ss_pred             CCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHH
Q psy11461          9 TNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFL   88 (253)
Q Consensus         9 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l   88 (253)
                      .+|..+.++..+|.+++..|++++|+..+.+++..+|.++.++.++|.++...++++.|...+.+++.++|++..++..+
T Consensus        34 ~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~l  113 (184)
T 3vtx_A           34 ADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKL  113 (184)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHH
Confidence            35778999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCHHHHHHHHHHHHhhchhcccchHHHHHHHHHHHHHHHHH
Q psy11461         89 GQALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIACQLRIAKKKRWA  136 (253)
Q Consensus        89 g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~  136 (253)
                      |.++..+|++++|+..|+++++++|.+...+...........+...+.
T Consensus       114 g~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~  161 (184)
T 3vtx_A          114 GLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAV  161 (184)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHH
Confidence            999999999999999999999999998655444444333333333333

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.68  E-value=2.5e-16  Score=136.39  Aligned_cols=117  Identities=12%  Similarity=0.049  Sum_probs=109.7

Q ss_pred             CCcccHHHHHHHHHHHHhccC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHH
Q psy11461          9 TNNLSDKELKDEGNRYFGLRQ-YEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFF   87 (253)
Q Consensus         9 ~~~~~a~~~~~~g~~~~~~g~-~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~   87 (253)
                      .+|..+.+|..+|.++...|+ +++|+.+|.+++.++|+++.+|+++|.++..+|++++|+.+|++++.++|++..+|++
T Consensus       126 l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~  205 (382)
T 2h6f_A          126 LNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQH  205 (382)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHH
T ss_pred             hCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHH
Confidence            467889999999999999997 9999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCHHHHHHHHHHHHhhchhcccchHHHHHH
Q psy11461         88 LGQALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIAC  125 (253)
Q Consensus        88 lg~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~  125 (253)
                      +|.++..+|++++|+.+|+++++++|++...+......
T Consensus       206 lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~  243 (382)
T 2h6f_A          206 RQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFV  243 (382)
T ss_dssp             HHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            99999999999999999999999999986655444433

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.68  E-value=2.5e-15  Score=108.20  Aligned_cols=110  Identities=33%  Similarity=0.524  Sum_probs=104.5

Q ss_pred             CCCCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHH
Q psy11461          7 FTTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQF   86 (253)
Q Consensus         7 ~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~   86 (253)
                      ....+..+..++.+|..++..|+++.|+..|.+++..+|.++.++.++|.++...|++++|+..+.+++.++|++..+++
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~   84 (131)
T 2vyi_A            5 SEEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYG   84 (131)
T ss_dssp             --CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             hhcchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHH
Confidence            34567788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCHHHHHHHHHHHHhhchhcc
Q psy11461         87 FLGQALHEINHYDEAVKHLQRAYDLSREQN  116 (253)
Q Consensus        87 ~lg~~~~~~~~~~~A~~~~~~al~l~p~~~  116 (253)
                      .+|.++..+|++++|+..|.++++++|++.
T Consensus        85 ~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~  114 (131)
T 2vyi_A           85 RMGLALSSLNKHVEAVAYYKKALELDPDNE  114 (131)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHSTTCH
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHhcCccch
Confidence            999999999999999999999999999863

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.68  E-value=1.8e-15  Score=118.50  Aligned_cols=105  Identities=31%  Similarity=0.361  Sum_probs=101.1

Q ss_pred             cccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCH----------------HHHHHHHHHHHHhhCHHHHHHHHHHH
Q psy11461         11 NLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIP----------------SYFTNRALCYLKLKQYVHCCDDCRKA   74 (253)
Q Consensus        11 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~----------------~~~~~~a~~~~~~~~~~~A~~~~~~a   74 (253)
                      +..+..++.+|+.++..|+|++|+..|.+++...|.++                .++.++|.|+..+|++++|+.++.++
T Consensus        35 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a  114 (198)
T 2fbn_A           35 VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKV  114 (198)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            44677899999999999999999999999999999887                89999999999999999999999999


Q ss_pred             HhhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461         75 LELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQ  115 (253)
Q Consensus        75 l~l~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~  115 (253)
                      +.++|.+..+++.+|.++..+|++++|+..|+++++++|++
T Consensus       115 l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~  155 (198)
T 2fbn_A          115 LKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNN  155 (198)
T ss_dssp             HHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC
T ss_pred             HHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc
Confidence            99999999999999999999999999999999999999987

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.68  E-value=2.3e-17  Score=124.21  Aligned_cols=105  Identities=17%  Similarity=0.020  Sum_probs=94.6

Q ss_pred             HHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhCCH
Q psy11461         19 DEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHY   98 (253)
Q Consensus        19 ~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~~~~   98 (253)
                      .+|..+..+|+++.|+..|.+++..+|.++..++++|.+|+++|+|++|+..++++++++|+++.+|+.+|.++..+|++
T Consensus         2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~   81 (150)
T 4ga2_A            2 PLGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENT   81 (150)
T ss_dssp             -----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred             HhHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCch
Confidence            37888999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhchhcccchHHHH
Q psy11461         99 DEAVKHLQRAYDLSREQNLNYGDDI  123 (253)
Q Consensus        99 ~~A~~~~~~al~l~p~~~~~~~~~~  123 (253)
                      ++|+..|+++++++|++...+....
T Consensus        82 ~~A~~~~~~al~~~p~~~~~~~~la  106 (150)
T 4ga2_A           82 DKAVECYRRSVELNPTQKDLVLKIA  106 (150)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            9999999999999999865544433

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.66  E-value=5.9e-16  Score=108.73  Aligned_cols=106  Identities=19%  Similarity=0.171  Sum_probs=101.8

Q ss_pred             CcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCC--cHHHHHH
Q psy11461         10 NNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS--LVKAQFF   87 (253)
Q Consensus        10 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~--~~~a~~~   87 (253)
                      +|..+..+..+|..++..|++++|+..|.+++..+|.++.++.++|.++..+|++++|+..+++++.++|.  +..+++.
T Consensus         2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~   81 (112)
T 2kck_A            2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAA   81 (112)
T ss_dssp             CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHH
Confidence            35667788999999999999999999999999999999999999999999999999999999999999999  9999999


Q ss_pred             HHHHHHHh-CCHHHHHHHHHHHHhhchhc
Q psy11461         88 LGQALHEI-NHYDEAVKHLQRAYDLSREQ  115 (253)
Q Consensus        88 lg~~~~~~-~~~~~A~~~~~~al~l~p~~  115 (253)
                      +|.++..+ |++++|++++++++...|++
T Consensus        82 l~~~~~~~~~~~~~A~~~~~~~~~~~p~~  110 (112)
T 2kck_A           82 KADALRYIEGKEVEAEIAEARAKLEHHHH  110 (112)
T ss_dssp             HHHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence            99999999 99999999999999999875

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.65  E-value=4.7e-15  Score=107.42  Aligned_cols=101  Identities=12%  Similarity=0.056  Sum_probs=97.2

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCc---HHHHHHH
Q psy11461         15 KELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIP---SYFTNRALCYLKLKQYVHCCDDCRKALELEPSL---VKAQFFL   88 (253)
Q Consensus        15 ~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~---~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~---~~a~~~l   88 (253)
                      ..++.+|..++..|+|++|+..|.+++..+|.++   .+++++|.++..+|++++|+..+.+++..+|++   +.+++.+
T Consensus         3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l   82 (129)
T 2xev_A            3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKL   82 (129)
T ss_dssp             CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHH
Confidence            3578899999999999999999999999999988   799999999999999999999999999999999   8999999


Q ss_pred             HHHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461         89 GQALHEINHYDEAVKHLQRAYDLSREQ  115 (253)
Q Consensus        89 g~~~~~~~~~~~A~~~~~~al~l~p~~  115 (253)
                      |.++..+|++++|+..|+++++..|++
T Consensus        83 a~~~~~~g~~~~A~~~~~~~~~~~p~~  109 (129)
T 2xev_A           83 GLSQYGEGKNTEAQQTLQQVATQYPGS  109 (129)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHCCCC
Confidence            999999999999999999999999986

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.65  E-value=6.1e-15  Score=116.72  Aligned_cols=104  Identities=17%  Similarity=0.087  Sum_probs=88.1

Q ss_pred             CcccHHHHHH----------------HHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHH
Q psy11461         10 NNLSDKELKD----------------EGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRK   73 (253)
Q Consensus        10 ~~~~a~~~~~----------------~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~   73 (253)
                      +|.++..++.                +|.+++..|++++|+..|.+++..+|.++.++.++|.++..+|++++|+.+|++
T Consensus        34 ~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~  113 (208)
T 3urz_A           34 NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEK  113 (208)
T ss_dssp             CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            4556667777                999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhCCCcHHHHHHHHHHHHHhCC--HHHHHHHHHHHHhhch
Q psy11461         74 ALELEPSLVKAQFFLGQALHEINH--YDEAVKHLQRAYDLSR  113 (253)
Q Consensus        74 al~l~p~~~~a~~~lg~~~~~~~~--~~~A~~~~~~al~l~p  113 (253)
                      ++.++|+++.+++.+|.+++..|.  ...+...+.+++...|
T Consensus       114 al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (208)
T 3urz_A          114 ILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTK  155 (208)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCH
T ss_pred             HHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCc
Confidence            999999999999999999876653  3445556666654443

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.64  E-value=1.1e-14  Score=111.78  Aligned_cols=108  Identities=19%  Similarity=0.249  Sum_probs=103.4

Q ss_pred             CCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHHhhCH--HHHHHHHHHHHhhCCCcHHHH
Q psy11461          9 TNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALC-YLKLKQY--VHCCDDCRKALELEPSLVKAQ   85 (253)
Q Consensus         9 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~-~~~~~~~--~~A~~~~~~al~l~p~~~~a~   85 (253)
                      ..|..+..+..+|..++..|++++|+.+|.+++..+|.++.++.++|.+ +...|++  ++|+..+.+++.++|++..++
T Consensus        39 ~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  118 (177)
T 2e2e_A           39 ANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITAL  118 (177)
T ss_dssp             HCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHH
T ss_pred             hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHH
Confidence            3567889999999999999999999999999999999999999999999 8899999  999999999999999999999


Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHhhchhcc
Q psy11461         86 FFLGQALHEINHYDEAVKHLQRAYDLSREQN  116 (253)
Q Consensus        86 ~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~  116 (253)
                      +.+|.++...|++++|+..|.++++++|++.
T Consensus       119 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  149 (177)
T 2e2e_A          119 MLLASDAFMQANYAQAIELWQKVMDLNSPRI  149 (177)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTS
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHHhhCCCCc
Confidence            9999999999999999999999999999873

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.64  E-value=3.6e-14  Score=115.64  Aligned_cols=109  Identities=13%  Similarity=0.168  Sum_probs=102.1

Q ss_pred             CCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCc---H
Q psy11461          9 TNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVI---PSYFTNRALCYLKLKQYVHCCDDCRKALELEPSL---V   82 (253)
Q Consensus         9 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~---~   82 (253)
                      ..+..+..++.+|..++..|+|++|+..|.+++..+|.+   +.+++.+|.+|..+|++++|+..|++++.++|++   .
T Consensus        10 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~   89 (261)
T 3qky_A           10 LRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVP   89 (261)
T ss_dssp             -CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHH
T ss_pred             CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhH
Confidence            467789999999999999999999999999999999999   8999999999999999999999999999998854   6


Q ss_pred             HHHHHHHHHHHH--------hCCHHHHHHHHHHHHhhchhccc
Q psy11461         83 KAQFFLGQALHE--------INHYDEAVKHLQRAYDLSREQNL  117 (253)
Q Consensus        83 ~a~~~lg~~~~~--------~~~~~~A~~~~~~al~l~p~~~~  117 (253)
                      .+++.+|.++..        +|++++|+..|+++++..|++..
T Consensus        90 ~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~  132 (261)
T 3qky_A           90 QAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHEL  132 (261)
T ss_dssp             HHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTT
T ss_pred             HHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchh
Confidence            789999999999        99999999999999999998754

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.64  E-value=6.4e-15  Score=127.02  Aligned_cols=103  Identities=32%  Similarity=0.553  Sum_probs=99.3

Q ss_pred             cHHHHHHHHHHHHhccCHHHHHHHHHHHHH----------------hCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHh
Q psy11461         13 SDKELKDEGNRYFGLRQYEEAINCYTRAII----------------KNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALE   76 (253)
Q Consensus        13 ~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~----------------~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~   76 (253)
                      .+..++.+|+.++..|+|++|+..|++++.                .+|.++.+|.++|.||.++|+|++|+.+|++|+.
T Consensus       222 ~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~  301 (370)
T 1ihg_A          222 ISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALE  301 (370)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence            466799999999999999999999999999                7788889999999999999999999999999999


Q ss_pred             hCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461         77 LEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQ  115 (253)
Q Consensus        77 l~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~  115 (253)
                      ++|++..+++++|.++..+|++++|+..|++|++++|++
T Consensus       302 ~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~  340 (370)
T 1ihg_A          302 IDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPED  340 (370)
T ss_dssp             TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             hCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Confidence            999999999999999999999999999999999999987

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.63  E-value=1.6e-14  Score=104.03  Aligned_cols=103  Identities=23%  Similarity=0.420  Sum_probs=98.9

Q ss_pred             ccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCc-------HHH
Q psy11461         12 LSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSL-------VKA   84 (253)
Q Consensus        12 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~-------~~a   84 (253)
                      ..+..++.+|..++..|+++.|+..|.+++..+|.++.++.++|.++..+|++++|+..+.+++.++|.+       ..+
T Consensus         2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~   81 (131)
T 1elr_A            2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA   81 (131)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHH
Confidence            4678899999999999999999999999999999999999999999999999999999999999999887       899


Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHhhchh
Q psy11461         85 QFFLGQALHEINHYDEAVKHLQRAYDLSRE  114 (253)
Q Consensus        85 ~~~lg~~~~~~~~~~~A~~~~~~al~l~p~  114 (253)
                      ++.+|.++...|++++|+..|.+++++.|+
T Consensus        82 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~  111 (131)
T 1elr_A           82 YARIGNSYFKEEKYKDAIHFYNKSLAEHRT  111 (131)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence            999999999999999999999999999874

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.62  E-value=2.8e-15  Score=112.85  Aligned_cols=90  Identities=20%  Similarity=0.288  Sum_probs=85.6

Q ss_pred             hccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCH----------HHHHHHHHHHHhhCCCcHHHHHHHHHHHHHh
Q psy11461         26 GLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQY----------VHCCDDCRKALELEPSLVKAQFFLGQALHEI   95 (253)
Q Consensus        26 ~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~----------~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~   95 (253)
                      +.+.|++|+..|.+++.++|.++.+|+++|.++..++++          ++|+..|++||+++|++..+|+++|.+|..+
T Consensus        14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l   93 (158)
T 1zu2_A           14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF   93 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence            557899999999999999999999999999999999875          5999999999999999999999999999988


Q ss_pred             C-----------CHHHHHHHHHHHHhhchhc
Q psy11461         96 N-----------HYDEAVKHLQRAYDLSREQ  115 (253)
Q Consensus        96 ~-----------~~~~A~~~~~~al~l~p~~  115 (253)
                      |           ++++|+.+|++|++++|++
T Consensus        94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~  124 (158)
T 1zu2_A           94 AFLTPDETEAKHNFDLATQFFQQAVDEQPDN  124 (158)
T ss_dssp             HHHCCCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred             cccCcchhhhhccHHHHHHHHHHHHHhCCCC
Confidence            5           8999999999999999997

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.62  E-value=4.4e-14  Score=100.67  Aligned_cols=104  Identities=31%  Similarity=0.471  Sum_probs=100.7

Q ss_pred             cHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q psy11461         13 SDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQAL   92 (253)
Q Consensus        13 ~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~   92 (253)
                      .+..++.+|..++..|++++|+..|.+++..+|.++.++.++|.++...|++++|+..+++++.++|.+..+++.+|.++
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~   87 (125)
T 1na0_A            8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY   87 (125)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence            47889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhCCHHHHHHHHHHHHhhchhcc
Q psy11461         93 HEINHYDEAVKHLQRAYDLSREQN  116 (253)
Q Consensus        93 ~~~~~~~~A~~~~~~al~l~p~~~  116 (253)
                      ...|++++|+..|.++++++|++.
T Consensus        88 ~~~~~~~~A~~~~~~~~~~~~~~~  111 (125)
T 1na0_A           88 YKQGDYDEAIEYYQKALELDPNNA  111 (125)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHhcCHHHHHHHHHHHHHhCCCcH
Confidence            999999999999999999999873

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.62  E-value=8.3e-14  Score=106.07  Aligned_cols=107  Identities=20%  Similarity=0.266  Sum_probs=72.5

Q ss_pred             CCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHH
Q psy11461          9 TNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFL   88 (253)
Q Consensus         9 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l   88 (253)
                      ..|..+..+..+|..++..|++++|+..|.+++..+|.++.++.++|.++...|++++|+..+.+++.++|.+..+++.+
T Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~  116 (186)
T 3as5_A           37 ADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRL  116 (186)
T ss_dssp             TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             hCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHH
Confidence            34455666666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             HHHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461         89 GQALHEINHYDEAVKHLQRAYDLSREQ  115 (253)
Q Consensus        89 g~~~~~~~~~~~A~~~~~~al~l~p~~  115 (253)
                      |.++...|++++|+..+.++++..|.+
T Consensus       117 a~~~~~~~~~~~A~~~~~~~~~~~~~~  143 (186)
T 3as5_A          117 GVALDNLGRFDEAIDSFKIALGLRPNE  143 (186)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHcCcHHHHHHHHHHHHhcCccc
Confidence            666666666666666666666666654

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.61  E-value=2.6e-14  Score=112.45  Aligned_cols=103  Identities=17%  Similarity=0.233  Sum_probs=64.4

Q ss_pred             cHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcH----------
Q psy11461         13 SDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLV----------   82 (253)
Q Consensus        13 ~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~----------   82 (253)
                      .+..++.+|..++..|++++|+..|.+++..+|.++.++.++|.+|..+|++++|+..+++++.+.|.+.          
T Consensus        36 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  115 (213)
T 1hh8_A           36 HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQ  115 (213)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBC
T ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccc
Confidence            3455666666666666666666666666666666666666666666666666666666666666555444          


Q ss_pred             ------HHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461         83 ------KAQFFLGQALHEINHYDEAVKHLQRAYDLSREQ  115 (253)
Q Consensus        83 ------~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~  115 (253)
                            .+++.+|.++..+|++++|+..|+++++++|++
T Consensus       116 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~  154 (213)
T 1hh8_A          116 FKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP  154 (213)
T ss_dssp             CEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred             cCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence                  566666666666666666666666666666654

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.60  E-value=1.4e-15  Score=129.61  Aligned_cols=107  Identities=27%  Similarity=0.300  Sum_probs=96.4

Q ss_pred             cccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCH-----------------HHHHHHHHHHHHhhCHHHHHHHHHH
Q psy11461         11 NLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIP-----------------SYFTNRALCYLKLKQYVHCCDDCRK   73 (253)
Q Consensus        11 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~-----------------~~~~~~a~~~~~~~~~~~A~~~~~~   73 (253)
                      +..+..++.+|+.++..|+|.+|+.+|.+++...|.+.                 .+|.++|.||.++|+|++|+.+|++
T Consensus       176 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~  255 (338)
T 2if4_A          176 IGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNI  255 (338)
T ss_dssp             HHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            45788999999999999999999999999999999877                 4899999999999999999999999


Q ss_pred             HHhhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhccc
Q psy11461         74 ALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNL  117 (253)
Q Consensus        74 al~l~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~~  117 (253)
                      ++.++|++..+++++|.++..+|++++|+..|+++++++|++..
T Consensus       256 al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~  299 (338)
T 2if4_A          256 VLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKA  299 (338)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------
T ss_pred             HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHH
Confidence            99999999999999999999999999999999999999998743

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.58  E-value=6.2e-14  Score=114.01  Aligned_cols=107  Identities=20%  Similarity=0.202  Sum_probs=103.8

Q ss_pred             CcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q psy11461         10 NNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLG   89 (253)
Q Consensus        10 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg   89 (253)
                      +|..+..++.+|..++..|++++|+..|.+++..+|.++.++.++|.++...|++++|+..+++++.++|.+..+++.+|
T Consensus        39 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la  118 (275)
T 1xnf_A           39 DDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRG  118 (275)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHH
T ss_pred             CchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHH
Confidence            46788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCHHHHHHHHHHHHhhchhcc
Q psy11461         90 QALHEINHYDEAVKHLQRAYDLSREQN  116 (253)
Q Consensus        90 ~~~~~~~~~~~A~~~~~~al~l~p~~~  116 (253)
                      .++..+|++++|+..|+++++++|++.
T Consensus       119 ~~~~~~g~~~~A~~~~~~a~~~~~~~~  145 (275)
T 1xnf_A          119 IALYYGGRDKLAQDDLLAFYQDDPNDP  145 (275)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHhccHHHHHHHHHHHHHhCCCCh
Confidence            999999999999999999999999874

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.58  E-value=4.1e-14  Score=125.78  Aligned_cols=138  Identities=12%  Similarity=0.058  Sum_probs=120.3

Q ss_pred             CCcccHHHHHHHHHHHHhccCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHH
Q psy11461          9 TNNLSDKELKDEGNRYFGLRQY-EEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFF   87 (253)
Q Consensus         9 ~~~~~a~~~~~~g~~~~~~g~~-~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~   87 (253)
                      ..+..+..++.+|..++..|+| ++|+.+|.+++..+|.++.+|.++|.+|..+|++++|+..|++++.++|+ ..+++.
T Consensus        97 ~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~  175 (474)
T 4abn_A           97 SAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQN  175 (474)
T ss_dssp             TCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-HHHHHH
T ss_pred             cCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-HHHHHH
Confidence            4567899999999999999999 99999999999999999999999999999999999999999999999999 799999


Q ss_pred             HHHHHHHh---------CCHHHHHHHHHHHHhhchhcccchHHHHHHHHHH--------HHHHHHHHHHHHHHHHHH
Q psy11461         88 LGQALHEI---------NHYDEAVKHLQRAYDLSREQNLNYGDDIACQLRI--------AKKKRWAETEEKRIAQEI  147 (253)
Q Consensus        88 lg~~~~~~---------~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~  147 (253)
                      +|.++..+         |++++|+..|+++++++|++...+..........        .....+....++.+...|
T Consensus       176 lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p  252 (474)
T 4abn_A          176 LSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDR  252 (474)
T ss_dssp             HHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCG
T ss_pred             HHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCC
Confidence            99999999         9999999999999999999876665555555554        555555555555555455

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.57  E-value=4.7e-14  Score=127.78  Aligned_cols=116  Identities=13%  Similarity=0.093  Sum_probs=105.3

Q ss_pred             CCCCCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHH
Q psy11461          6 NFTTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQ   85 (253)
Q Consensus         6 ~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~   85 (253)
                      ....+|..+..+..+|..++..|++++|+..|++++..+|.++.++.++|.+|..+|++++|+..++++++++|++..++
T Consensus        15 al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~   94 (568)
T 2vsy_A           15 AVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIA   94 (568)
T ss_dssp             ------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHH
Confidence            34456788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHhhchhcccchHH
Q psy11461         86 FFLGQALHEINHYDEAVKHLQRAYDLSREQNLNYGD  121 (253)
Q Consensus        86 ~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~  121 (253)
                      +.+|.++..+|++++|+..|+++++++|++...+..
T Consensus        95 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  130 (568)
T 2vsy_A           95 LWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQ  130 (568)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            999999999999999999999999999987544433

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.57  E-value=4.2e-15  Score=112.14  Aligned_cols=108  Identities=11%  Similarity=-0.032  Sum_probs=92.1

Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Q psy11461         32 EAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDL  111 (253)
Q Consensus        32 ~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l  111 (253)
                      .+-..|.+++.++|+++.+++++|.+++.+|++++|+..|++++.++|+++.+|+.+|.++..+|++++|+.+|++++++
T Consensus        20 ~~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l   99 (151)
T 3gyz_A           20 NSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFAL   99 (151)
T ss_dssp             HTSCCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HCCCCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhh
Confidence            34455778888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhcccchHHHHHHHHHHHHHHHHHHHH
Q psy11461        112 SREQNLNYGDDIACQLRIAKKKRWAETE  139 (253)
Q Consensus       112 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (253)
                      +|+++..+...........+...+....
T Consensus       100 ~P~~~~~~~~lg~~~~~lg~~~eA~~~~  127 (151)
T 3gyz_A          100 GKNDYTPVFHTGQCQLRLKAPLKAKECF  127 (151)
T ss_dssp             SSSCCHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CCCCcHHHHHHHHHHHHcCCHHHHHHHH
Confidence            9998776665555555544444443333

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.57  E-value=9.9e-14  Score=99.89  Aligned_cols=102  Identities=30%  Similarity=0.474  Sum_probs=97.7

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q psy11461         15 KELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHE   94 (253)
Q Consensus        15 ~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~   94 (253)
                      ..++.+|..++..|++++|+..|.+++..+|.++.++..+|.++...|++++|+..+.+++..+|.+..+++.+|.++..
T Consensus         2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~   81 (136)
T 2fo7_A            2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK   81 (136)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred             cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence            46788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCHHHHHHHHHHHHhhchhcc
Q psy11461         95 INHYDEAVKHLQRAYDLSREQN  116 (253)
Q Consensus        95 ~~~~~~A~~~~~~al~l~p~~~  116 (253)
                      .|++++|+..+.+++...|.+.
T Consensus        82 ~~~~~~A~~~~~~~~~~~~~~~  103 (136)
T 2fo7_A           82 QGDYDEAIEYYQKALELDPRSA  103 (136)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCH
T ss_pred             hcCHHHHHHHHHHHHHhCCCCh
Confidence            9999999999999999998763

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.57  E-value=3.2e-15  Score=107.27  Aligned_cols=91  Identities=14%  Similarity=0.228  Sum_probs=83.5

Q ss_pred             hccCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhCCHHHHH
Q psy11461         26 GLRQYEEAINCYTRAIIK---NPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAV  102 (253)
Q Consensus        26 ~~g~~~~A~~~y~~ai~~---~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~~~~~~A~  102 (253)
                      ..|++++|+.+|.+++..   +|.++.++.++|.+|..+|++++|+..+++++.++|+++.+++.+|.++..+|++++|+
T Consensus         2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~   81 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV   81 (117)
T ss_dssp             -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence            468999999999999999   68899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhchhcc
Q psy11461        103 KHLQRAYDLSREQN  116 (253)
Q Consensus       103 ~~~~~al~l~p~~~  116 (253)
                      ..|++++...|+++
T Consensus        82 ~~~~~al~~~p~~~   95 (117)
T 3k9i_A           82 ELLLKIIAETSDDE   95 (117)
T ss_dssp             HHHHHHHHHHCCCH
T ss_pred             HHHHHHHHhCCCcH
Confidence            99999999999873

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.56  E-value=9.3e-14  Score=111.62  Aligned_cols=106  Identities=28%  Similarity=0.437  Sum_probs=101.3

Q ss_pred             CCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHH
Q psy11461          9 TNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFL   88 (253)
Q Consensus         9 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l   88 (253)
                      ..|..+..+..+|..++..|++++|+..|.+++..+|.++.++.++|.++..+|++++|+..+.+++.++|+++.+++.+
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l  213 (258)
T 3uq3_A          134 VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRK  213 (258)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence            45778889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCHHHHHHHHHHHHhhchh
Q psy11461         89 GQALHEINHYDEAVKHLQRAYDLSRE  114 (253)
Q Consensus        89 g~~~~~~~~~~~A~~~~~~al~l~p~  114 (253)
                      |.++..+|++++|+..|+++++++|+
T Consensus       214 ~~~~~~~g~~~~A~~~~~~a~~~~~~  239 (258)
T 3uq3_A          214 ATAQIAVKEYASALETLDAARTKDAE  239 (258)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHhChh
Confidence            99999999999999999999999943

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.56  E-value=1.8e-13  Score=109.18  Aligned_cols=107  Identities=20%  Similarity=0.224  Sum_probs=76.7

Q ss_pred             CcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q psy11461         10 NNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLG   89 (253)
Q Consensus        10 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg   89 (253)
                      .|..+..+..+|..++..|++++|+..|.+++..+|.++.++..+|.++..+|++++|+..+++++.++|.+..+++.+|
T Consensus        53 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a  132 (243)
T 2q7f_A           53 NKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLG  132 (243)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            45556677777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHhCCHHHHHHHHHHHHhhchhcc
Q psy11461         90 QALHEINHYDEAVKHLQRAYDLSREQN  116 (253)
Q Consensus        90 ~~~~~~~~~~~A~~~~~~al~l~p~~~  116 (253)
                      .++...|++++|+..+.+++++.|.+.
T Consensus       133 ~~~~~~~~~~~A~~~~~~~~~~~~~~~  159 (243)
T 2q7f_A          133 TVLVKLEQPKLALPYLQRAVELNENDT  159 (243)
T ss_dssp             HHHHHTSCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHhccHHHHHHHHHHHHHhCCccH
Confidence            777777777777777777777766653

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.56  E-value=3e-14  Score=126.66  Aligned_cols=138  Identities=12%  Similarity=0.107  Sum_probs=115.6

Q ss_pred             CcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh---------hCHHHHHHHHHHHHhhCCC
Q psy11461         10 NNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKL---------KQYVHCCDDCRKALELEPS   80 (253)
Q Consensus        10 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~---------~~~~~A~~~~~~al~l~p~   80 (253)
                      +|..+.++..+|..++..|++++|+.+|.+++..+|+ +.++.++|.++..+         |++++|+..+++++.++|+
T Consensus       133 ~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~  211 (474)
T 4abn_A          133 EPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL  211 (474)
T ss_dssp             CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC
Confidence            5677899999999999999999999999999999999 79999999999999         9999999999999999999


Q ss_pred             cHHHHHHHHHHHHHh--------CCHHHHHHHHHHHHhhch---hcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11461         81 LVKAQFFLGQALHEI--------NHYDEAVKHLQRAYDLSR---EQNLNYGDDIACQLRIAKKKRWAETEEKRIAQEIE  148 (253)
Q Consensus        81 ~~~a~~~lg~~~~~~--------~~~~~A~~~~~~al~l~p---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (253)
                      +..+|+.+|.++..+        |++++|+..|+++++++|   .+...+...............+....++.+...|.
T Consensus       212 ~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~  290 (474)
T 4abn_A          212 DGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA  290 (474)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             CHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            999999999999999        999999999999999999   66555544444444444444444444444444443

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.56  E-value=5e-14  Score=120.94  Aligned_cols=105  Identities=22%  Similarity=0.236  Sum_probs=59.6

Q ss_pred             cccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q psy11461         11 NLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQ   90 (253)
Q Consensus        11 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~   90 (253)
                      |..+..+..+|..+...|++++|+..|.+++..+|+++.++.++|.++...|++++|+..+.+++.++|++..++..+|.
T Consensus        64 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~  143 (388)
T 1w3b_A           64 PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGN  143 (388)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHH
T ss_pred             CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence            44455555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             HHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461         91 ALHEINHYDEAVKHLQRAYDLSREQ  115 (253)
Q Consensus        91 ~~~~~~~~~~A~~~~~~al~l~p~~  115 (253)
                      ++..+|++++|+..|.++++.+|++
T Consensus       144 ~~~~~g~~~~A~~~~~~al~~~p~~  168 (388)
T 1w3b_A          144 LLKALGRLEEAKACYLKAIETQPNF  168 (388)
T ss_dssp             HHHTTSCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHccCHHHHHHHHHHHHHhCCCC
Confidence            5555555555555555555555554

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.56  E-value=5.2e-15  Score=104.22  Aligned_cols=94  Identities=26%  Similarity=0.467  Sum_probs=88.6

Q ss_pred             cHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCc------HHHHH
Q psy11461         13 SDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSL------VKAQF   86 (253)
Q Consensus        13 ~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~------~~a~~   86 (253)
                      .+..++.+|..++..|+|++|+..|.+++..+|.++.++.++|.++..+|++++|+.++++++.++|++      ..+++
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~   82 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY   82 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence            578899999999999999999999999999999999999999999999999999999999999999999      99999


Q ss_pred             HHHHHHHHhCCHHHHHHHHH
Q psy11461         87 FLGQALHEINHYDEAVKHLQ  106 (253)
Q Consensus        87 ~lg~~~~~~~~~~~A~~~~~  106 (253)
                      .+|.++..+|+++.|+..+.
T Consensus        83 ~~~~~~~~~~~~~~a~~~~~  102 (111)
T 2l6j_A           83 RLELAQGAVGSVQIPVVEVD  102 (111)
T ss_dssp             HHHHHHHHHHCCCCCSSSSS
T ss_pred             HHHHHHHHHHhHhhhHhHHH
Confidence            99999999998877766554

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.55  E-value=2e-13  Score=109.73  Aligned_cols=106  Identities=16%  Similarity=0.240  Sum_probs=100.0

Q ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHH--------------------------hCCCCHHHHHHHHHHHHHhhCHHHH
Q psy11461         14 DKELKDEGNRYFGLRQYEEAINCYTRAII--------------------------KNPVIPSYFTNRALCYLKLKQYVHC   67 (253)
Q Consensus        14 a~~~~~~g~~~~~~g~~~~A~~~y~~ai~--------------------------~~p~~~~~~~~~a~~~~~~~~~~~A   67 (253)
                      +..+..+|..+...|++++|+..|.+++.                          .+|.++.++.++|.++...|++++|
T Consensus        79 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A  158 (258)
T 3uq3_A           79 SKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNA  158 (258)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHH
Confidence            78999999999999999999999999999                          6677788999999999999999999


Q ss_pred             HHHHHHHHhhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhcccch
Q psy11461         68 CDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNY  119 (253)
Q Consensus        68 ~~~~~~al~l~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~~~~  119 (253)
                      +..+++++.++|.+..+++.+|.++...|++++|+..|.++++++|++...+
T Consensus       159 ~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~  210 (258)
T 3uq3_A          159 VKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAY  210 (258)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHH
Confidence            9999999999999999999999999999999999999999999999875443

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.55  E-value=2e-14  Score=104.86  Aligned_cols=109  Identities=15%  Similarity=0.170  Sum_probs=86.7

Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhcccc
Q psy11461         39 RAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLN  118 (253)
Q Consensus        39 ~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~~~  118 (253)
                      ++..++|..+..+.++|.+|++.|+|++|+..|+++++++|.++.+++++|.++..+|++++|+..|+++++++|++...
T Consensus         4 r~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a   83 (126)
T 4gco_A            4 RLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKG   83 (126)
T ss_dssp             ---CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHH
Confidence            44557899999999999999999999999999999999999999999999999999999999999999999999998665


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11461        119 YGDDIACQLRIAKKKRWAETEEKRIAQEI  147 (253)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (253)
                      +...............+....++.+..+|
T Consensus        84 ~~~lg~~~~~~~~~~~A~~~~~~al~l~P  112 (126)
T 4gco_A           84 YIRKAACLVAMREWSKAQRAYEDALQVDP  112 (126)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHCc
Confidence            55444444444444443333333443333

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.55  E-value=1.2e-13  Score=118.46  Aligned_cols=106  Identities=27%  Similarity=0.323  Sum_probs=58.5

Q ss_pred             cccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q psy11461         11 NLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQ   90 (253)
Q Consensus        11 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~   90 (253)
                      |.....+..+|..+...|++++|+..|.+++..+|.++.++.++|.++...|++++|+..+++++.++|++..+++.+|.
T Consensus       132 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~  211 (388)
T 1w3b_A          132 PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGN  211 (388)
T ss_dssp             TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence            44445555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             HHHHhCCHHHHHHHHHHHHhhchhcc
Q psy11461         91 ALHEINHYDEAVKHLQRAYDLSREQN  116 (253)
Q Consensus        91 ~~~~~~~~~~A~~~~~~al~l~p~~~  116 (253)
                      ++...|++++|+..|.+++.++|++.
T Consensus       212 ~~~~~~~~~~A~~~~~~al~~~p~~~  237 (388)
T 1w3b_A          212 VLKEARIFDRAVAAYLRALSLSPNHA  237 (388)
T ss_dssp             HHHTTTCTTHHHHHHHHHHHHCTTCH
T ss_pred             HHHHcCCHHHHHHHHHHHHhhCcCCH
Confidence            55555555555555555555555443

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.55  E-value=1.5e-14  Score=128.66  Aligned_cols=108  Identities=26%  Similarity=0.449  Sum_probs=102.8

Q ss_pred             cccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q psy11461         11 NLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQ   90 (253)
Q Consensus        11 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~   90 (253)
                      +..+..++.+|..++..|+|++|+..|++++..+|.++.++.++|.+|..+|++++|+.+++++++++|++..+++++|.
T Consensus         3 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~   82 (477)
T 1wao_1            3 LKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAA   82 (477)
T ss_dssp             HHHHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            45667788899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCHHHHHHHHHHHHhhchhcccc
Q psy11461         91 ALHEINHYDEAVKHLQRAYDLSREQNLN  118 (253)
Q Consensus        91 ~~~~~~~~~~A~~~~~~al~l~p~~~~~  118 (253)
                      ++..+|++++|+..|+++++++|++...
T Consensus        83 ~~~~~g~~~eA~~~~~~al~~~p~~~~~  110 (477)
T 1wao_1           83 SNMALGKFRAALRDYETVVKVKPHDKDA  110 (477)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHSTTCTTH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence            9999999999999999999999987543

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.55  E-value=3.9e-13  Score=109.44  Aligned_cols=108  Identities=16%  Similarity=0.211  Sum_probs=99.0

Q ss_pred             CCCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHH--------hhCHHHHHHHHHHHHh
Q psy11461          8 TTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVI---PSYFTNRALCYLK--------LKQYVHCCDDCRKALE   76 (253)
Q Consensus         8 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~---~~~~~~~a~~~~~--------~~~~~~A~~~~~~al~   76 (253)
                      +.++..+.+++.+|.+++..|+|++|+..|.+++..+|.+   +.+++++|.++..        +|++++|+..+++++.
T Consensus        46 p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~  125 (261)
T 3qky_A           46 RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFID  125 (261)
T ss_dssp             SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHH
T ss_pred             CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHH
Confidence            3444458999999999999999999999999999998854   6789999999999        9999999999999999


Q ss_pred             hCCCcHHHH-----------------HHHHHHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461         77 LEPSLVKAQ-----------------FFLGQALHEINHYDEAVKHLQRAYDLSREQ  115 (253)
Q Consensus        77 l~p~~~~a~-----------------~~lg~~~~~~~~~~~A~~~~~~al~l~p~~  115 (253)
                      .+|++..+.                 +.+|.++...|++++|+..|+++++..|++
T Consensus       126 ~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~  181 (261)
T 3qky_A          126 RYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDT  181 (261)
T ss_dssp             HCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTS
T ss_pred             HCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCC
Confidence            999986665                 889999999999999999999999999986

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.54  E-value=1.1e-13  Score=105.42  Aligned_cols=109  Identities=16%  Similarity=0.160  Sum_probs=102.9

Q ss_pred             CCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHH
Q psy11461          9 TNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFL   88 (253)
Q Consensus         9 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l   88 (253)
                      .....+..+..+|..++..|++++|+..|.+++..+|.++.++..+|.++...|++++|+..+.+++.++|.+..+++.+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~   82 (186)
T 3as5_A            3 NDDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVL   82 (186)
T ss_dssp             -CCHHHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             ccchhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence            34556788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCHHHHHHHHHHHHhhchhccc
Q psy11461         89 GQALHEINHYDEAVKHLQRAYDLSREQNL  117 (253)
Q Consensus        89 g~~~~~~~~~~~A~~~~~~al~l~p~~~~  117 (253)
                      |.++...|++++|+..+.+++...|.+..
T Consensus        83 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~  111 (186)
T 3as5_A           83 GLTYVQVQKYDLAVPLLIKVAEANPINFN  111 (186)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHhcCcHhHH
Confidence            99999999999999999999999988643

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.54  E-value=1.8e-13  Score=109.20  Aligned_cols=108  Identities=19%  Similarity=0.212  Sum_probs=103.1

Q ss_pred             CcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q psy11461         10 NNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLG   89 (253)
Q Consensus        10 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg   89 (253)
                      .|..+..+..+|..+...|++++|+..|.+++..+|.++.++..+|.++...|++++|+..+.+++.++|.+..+++.+|
T Consensus        87 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~  166 (243)
T 2q7f_A           87 DSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFG  166 (243)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHH
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCHHHHHHHHHHHHhhchhccc
Q psy11461         90 QALHEINHYDEAVKHLQRAYDLSREQNL  117 (253)
Q Consensus        90 ~~~~~~~~~~~A~~~~~~al~l~p~~~~  117 (253)
                      .++...|++++|+..|.+++..+|++..
T Consensus       167 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~  194 (243)
T 2q7f_A          167 MCLANEGMLDEALSQFAAVTEQDPGHAD  194 (243)
T ss_dssp             HHHHHHTCCHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCcccHH
Confidence            9999999999999999999999988643

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.54  E-value=1.1e-14  Score=135.05  Aligned_cols=140  Identities=11%  Similarity=-0.045  Sum_probs=116.9

Q ss_pred             CCCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHH
Q psy11461          8 TTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFF   87 (253)
Q Consensus         8 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~   87 (253)
                      ..+|..+..++.+|..++..|+|++|+..|++++..+|+++.+++++|.++..+|++++|+..|+++++++|++..++++
T Consensus       427 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~  506 (681)
T 2pzi_A          427 VDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLA  506 (681)
T ss_dssp             -CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHH
T ss_pred             cccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHH
Confidence            34577888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCHHHHHHHHHHHHhhchhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11461         88 LGQALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIACQLRIAKKKRWAETEEKRIAQEIE  148 (253)
Q Consensus        88 lg~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (253)
                      +|.++..+|++++ +..|++|++++|++...+...........+...+....++.+...|.
T Consensus       507 lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~  566 (681)
T 2pzi_A          507 LAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRH  566 (681)
T ss_dssp             HHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTT
T ss_pred             HHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcc
Confidence            9999999999999 99999999999998665555554444444444444444443333333

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.54  E-value=2.5e-13  Score=106.82  Aligned_cols=102  Identities=20%  Similarity=0.185  Sum_probs=97.2

Q ss_pred             CCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHH
Q psy11461          9 TNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFL   88 (253)
Q Consensus         9 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l   88 (253)
                      ..|..+..+..+|..++..|++++|+..|.+++..+|.++.++..+|.++...|++++|+..+.+++.++|.+..+++.+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l   82 (225)
T 2vq2_A            3 KANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNY   82 (225)
T ss_dssp             -CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHH
Confidence            46778899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHh-CCHHHHHHHHHHHHh
Q psy11461         89 GQALHEI-NHYDEAVKHLQRAYD  110 (253)
Q Consensus        89 g~~~~~~-~~~~~A~~~~~~al~  110 (253)
                      |.++... |++++|+..++++++
T Consensus        83 ~~~~~~~~~~~~~A~~~~~~~~~  105 (225)
T 2vq2_A           83 GWFLCGRLNRPAESMAYFDKALA  105 (225)
T ss_dssp             HHHHHTTTCCHHHHHHHHHHHHT
T ss_pred             HHHHHHhcCcHHHHHHHHHHHHc
Confidence            9999999 999999999999999

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.54  E-value=5.3e-13  Score=104.96  Aligned_cols=111  Identities=14%  Similarity=0.079  Sum_probs=103.2

Q ss_pred             CcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh-hCHHHHHHHHHHHHh--hCCCcHHHHH
Q psy11461         10 NNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKL-KQYVHCCDDCRKALE--LEPSLVKAQF   86 (253)
Q Consensus        10 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~-~~~~~A~~~~~~al~--l~p~~~~a~~   86 (253)
                      .|..+..+..+|..+...|++++|+..|.+++..+|.++.++.++|.++... |++++|+..+++++.  .+|.+..+++
T Consensus        38 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~  117 (225)
T 2vq2_A           38 DPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANL  117 (225)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHH
T ss_pred             CccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHH
Confidence            4566889999999999999999999999999999999999999999999999 999999999999999  7778899999


Q ss_pred             HHHHHHHHhCCHHHHHHHHHHHHhhchhcccchH
Q psy11461         87 FLGQALHEINHYDEAVKHLQRAYDLSREQNLNYG  120 (253)
Q Consensus        87 ~lg~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~  120 (253)
                      .+|.++...|++++|+..|.++++..|.+...+.
T Consensus       118 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~  151 (225)
T 2vq2_A          118 NKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFK  151 (225)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHH
Confidence            9999999999999999999999999998754433

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.54  E-value=1e-13  Score=117.93  Aligned_cols=108  Identities=15%  Similarity=0.108  Sum_probs=102.1

Q ss_pred             ccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q psy11461         12 LSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQA   91 (253)
Q Consensus        12 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~   91 (253)
                      ..+..++.+|..++..|++++|+..|++++..+|.++.++.++|.++..+|++++|+..+++++.++|++..+++.+|.+
T Consensus        63 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~  142 (365)
T 4eqf_A           63 KDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS  142 (365)
T ss_dssp             TTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence            44567999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCHHHHHHHHHHHHhhchhcccch
Q psy11461         92 LHEINHYDEAVKHLQRAYDLSREQNLNY  119 (253)
Q Consensus        92 ~~~~~~~~~A~~~~~~al~l~p~~~~~~  119 (253)
                      +..+|++++|+..|+++++++|++....
T Consensus       143 ~~~~g~~~~A~~~~~~al~~~p~~~~~~  170 (365)
T 4eqf_A          143 YTNTSHQQDACEALKNWIKQNPKYKYLV  170 (365)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCHHHHCC-
T ss_pred             HHccccHHHHHHHHHHHHHhCccchHHH
Confidence            9999999999999999999999875443

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.53  E-value=1e-13  Score=109.05  Aligned_cols=102  Identities=20%  Similarity=0.253  Sum_probs=95.7

Q ss_pred             ccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q psy11461         12 LSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQA   91 (253)
Q Consensus        12 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~   91 (253)
                      ..+..++.+|..++..|+|++|+..|.+++  +| ++.++.++|.+|..+|++++|+..+.+++.++|++..+++.+|.+
T Consensus         4 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~   80 (213)
T 1hh8_A            4 VEAISLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGML   80 (213)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence            356678999999999999999999999996  33 789999999999999999999999999999999999999999999


Q ss_pred             HHHhCCHHHHHHHHHHHHhhchhcc
Q psy11461         92 LHEINHYDEAVKHLQRAYDLSREQN  116 (253)
Q Consensus        92 ~~~~~~~~~A~~~~~~al~l~p~~~  116 (253)
                      +..+|++++|+..|++++++.|.+.
T Consensus        81 ~~~~~~~~~A~~~~~~al~~~~~~~  105 (213)
T 1hh8_A           81 YYQTEKYDLAIKDLKEALIQLRGNQ  105 (213)
T ss_dssp             HHHTTCHHHHHHHHHHHHHTTTTCS
T ss_pred             HHHcccHHHHHHHHHHHHHhCCCcc
Confidence            9999999999999999999998764

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.53  E-value=2.8e-13  Score=118.03  Aligned_cols=113  Identities=16%  Similarity=0.229  Sum_probs=103.9

Q ss_pred             CCCCCCCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHH
Q psy11461          4 SHNFTTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVK   83 (253)
Q Consensus         4 ~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~   83 (253)
                      .+....+|.++..++.+|..++..|+|++|+..|++++..+|.++.++.++|.++..+|++++|+..+++++.++|++..
T Consensus        16 ~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~   95 (450)
T 2y4t_A           16 ENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTA   95 (450)
T ss_dssp             -------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             cccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHH
Confidence            34556789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHhhchhcc
Q psy11461         84 AQFFLGQALHEINHYDEAVKHLQRAYDLSREQN  116 (253)
Q Consensus        84 a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~  116 (253)
                      +++.+|.++..+|++++|+..|+++++++|++.
T Consensus        96 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  128 (450)
T 2y4t_A           96 ARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEN  128 (450)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh
Confidence            999999999999999999999999999999864

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.53  E-value=2.8e-13  Score=113.85  Aligned_cols=105  Identities=17%  Similarity=0.237  Sum_probs=99.3

Q ss_pred             cHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q psy11461         13 SDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQAL   92 (253)
Q Consensus        13 ~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~   92 (253)
                      ++..++.+|..++..|+|++|+..|.+++..+|.++.++.++|.++..+|++++|+..+++++.++|++..+++.+|.++
T Consensus         2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~   81 (359)
T 3ieg_A            2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL   81 (359)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhCCHHHHHHHHHHHHhhch---hccc
Q psy11461         93 HEINHYDEAVKHLQRAYDLSR---EQNL  117 (253)
Q Consensus        93 ~~~~~~~~A~~~~~~al~l~p---~~~~  117 (253)
                      ...|++++|+..|+++++++|   ++..
T Consensus        82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~  109 (359)
T 3ieg_A           82 LKQGKLDEAEDDFKKVLKSNPSEQEEKE  109 (359)
T ss_dssp             HHHTCHHHHHHHHHHHHTSCCCHHHHHH
T ss_pred             HHcCChHHHHHHHHHHHhcCCcccChHH
Confidence            999999999999999999999   6543

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.53  E-value=2.9e-13  Score=115.13  Aligned_cols=109  Identities=15%  Similarity=0.134  Sum_probs=88.3

Q ss_pred             CcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCC---------
Q psy11461         10 NNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS---------   80 (253)
Q Consensus        10 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~---------   80 (253)
                      .|..+..+..+|..++..|++++|+..|.+++..+|.++.++.++|.+|..+|++++|+..+++++.++|+         
T Consensus        95 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~  174 (365)
T 4eqf_A           95 DPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKK  174 (365)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-----
T ss_pred             CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhc
Confidence            46778899999999999999999999999999999999999999999999999999999988888887665         


Q ss_pred             -------------------------------------cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhcccc
Q psy11461         81 -------------------------------------LVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLN  118 (253)
Q Consensus        81 -------------------------------------~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~~~  118 (253)
                                                           ++.+++.+|.++..+|++++|+..|+++++++|++...
T Consensus       175 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~  249 (365)
T 4eqf_A          175 GSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSL  249 (365)
T ss_dssp             --------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             cchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH
Confidence                                                 45556666666666666666666666666666665433

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.52  E-value=3.5e-13  Score=96.95  Aligned_cols=105  Identities=30%  Similarity=0.464  Sum_probs=100.6

Q ss_pred             CcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q psy11461         10 NNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLG   89 (253)
Q Consensus        10 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg   89 (253)
                      .|.....+..+|..++..|++++|+..|.+++..+|.++.++.++|.++...|++++|+..+.+++...|.+..+++.+|
T Consensus        31 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la  110 (136)
T 2fo7_A           31 DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLG  110 (136)
T ss_dssp             CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence            35567889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCHHHHHHHHHHHHhhchh
Q psy11461         90 QALHEINHYDEAVKHLQRAYDLSRE  114 (253)
Q Consensus        90 ~~~~~~~~~~~A~~~~~~al~l~p~  114 (253)
                      .++...|++++|+..+.+++.++|.
T Consensus       111 ~~~~~~~~~~~A~~~~~~~~~~~~~  135 (136)
T 2fo7_A          111 NAYYKQGDYDEAIEYYQKALELDPR  135 (136)
T ss_dssp             HHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHccHHHHHHHHHHHHccCCC
Confidence            9999999999999999999999886

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.52  E-value=3.2e-13  Score=114.52  Aligned_cols=103  Identities=21%  Similarity=0.331  Sum_probs=94.7

Q ss_pred             cHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q psy11461         13 SDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQAL   92 (253)
Q Consensus        13 ~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~   92 (253)
                      .+..+..+|..+...|++++|+..|.+++..+|.++.++.++|.++..+|++++|+..+++++.++|++..+++.+|.++
T Consensus       216 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~  295 (368)
T 1fch_A          216 DPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISC  295 (368)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            67888899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhCCHHHHHHHHHHHHhhchhc
Q psy11461         93 HEINHYDEAVKHLQRAYDLSREQ  115 (253)
Q Consensus        93 ~~~~~~~~A~~~~~~al~l~p~~  115 (253)
                      ..+|++++|+..|++++++.|++
T Consensus       296 ~~~g~~~~A~~~~~~al~~~~~~  318 (368)
T 1fch_A          296 INLGAHREAVEHFLEALNMQRKS  318 (368)
T ss_dssp             HHHTCHHHHHHHHHHHHHHHHTC
T ss_pred             HHCCCHHHHHHHHHHHHHhCCCC
Confidence            99999999999999999998876

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.52  E-value=1.1e-12  Score=114.18  Aligned_cols=104  Identities=11%  Similarity=0.165  Sum_probs=53.4

Q ss_pred             cHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHH------------HHHHHHhhCHHHHHHHHHHHHhhCCC
Q psy11461         13 SDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNR------------ALCYLKLKQYVHCCDDCRKALELEPS   80 (253)
Q Consensus        13 ~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~------------a~~~~~~~~~~~A~~~~~~al~l~p~   80 (253)
                      .+..+..+|..+...|++++|+..|.+++..+|.+..++..+            |.++...|++++|+..+++++.++|+
T Consensus       210 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~  289 (450)
T 2y4t_A          210 NTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS  289 (450)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence            344455555555555555555555555555555555444333            55555555555555555555555555


Q ss_pred             cH----HHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhcc
Q psy11461         81 LV----KAQFFLGQALHEINHYDEAVKHLQRAYDLSREQN  116 (253)
Q Consensus        81 ~~----~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~  116 (253)
                      ++    .++..+|.++...|++++|+..++++++++|++.
T Consensus       290 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~  329 (450)
T 2y4t_A          290 IAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNV  329 (450)
T ss_dssp             SHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccH
Confidence            42    2444555555555555555555555555555443

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.51  E-value=7e-14  Score=104.83  Aligned_cols=108  Identities=9%  Similarity=-0.030  Sum_probs=90.8

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q psy11461         31 EEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYD  110 (253)
Q Consensus        31 ~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~  110 (253)
                      -.+-..|.+++..+|.++..++++|.++...|++++|+..|++++.++|.++.+|+.+|.++..+|++++|+..|++++.
T Consensus         4 ~~~~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~   83 (148)
T 2vgx_A            4 GSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAV   83 (148)
T ss_dssp             --CCCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             cchhhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            34445688999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hchhcccchHHHHHHHHHHHHHHHHHHH
Q psy11461        111 LSREQNLNYGDDIACQLRIAKKKRWAET  138 (253)
Q Consensus       111 l~p~~~~~~~~~~~~~~~~~~~~~~~~~  138 (253)
                      ++|+++..+...........+...+...
T Consensus        84 l~p~~~~~~~~lg~~~~~~g~~~~A~~~  111 (148)
T 2vgx_A           84 MDIXEPRFPFHAAECLLQXGELAEAESG  111 (148)
T ss_dssp             HSTTCTHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             cCCCCchHHHHHHHHHHHcCCHHHHHHH
Confidence            9999876655544444444444333333

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.51  E-value=2.9e-13  Score=108.19  Aligned_cols=105  Identities=10%  Similarity=0.091  Sum_probs=97.1

Q ss_pred             cHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHH---HHH
Q psy11461         13 SDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIP---SYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVK---AQF   86 (253)
Q Consensus        13 ~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~---~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~---a~~   86 (253)
                      .+..++.+|..++..|+|++|+..|.+++..+|.++   .+++++|.+|..+|+|++|+..|++++.++|++..   +++
T Consensus         3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~   82 (225)
T 2yhc_A            3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY   82 (225)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence            467899999999999999999999999999999864   68999999999999999999999999999999864   899


Q ss_pred             HHHHHHHH------------------hCCHHHHHHHHHHHHhhchhccc
Q psy11461         87 FLGQALHE------------------INHYDEAVKHLQRAYDLSREQNL  117 (253)
Q Consensus        87 ~lg~~~~~------------------~~~~~~A~~~~~~al~l~p~~~~  117 (253)
                      .+|.++..                  .|++++|+..|+++++..|++..
T Consensus        83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~  131 (225)
T 2yhc_A           83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQY  131 (225)
T ss_dssp             HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTT
T ss_pred             HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChh
Confidence            99999987                  57899999999999999999854

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.51  E-value=3.9e-14  Score=131.32  Aligned_cols=112  Identities=13%  Similarity=-0.052  Sum_probs=106.0

Q ss_pred             CcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q psy11461         10 NNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLG   89 (253)
Q Consensus        10 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg   89 (253)
                      +|.++.+++.+|..++..|+|++|+..|++++.++|+++.++.++|.++..+|++++ +..|++|++++|++..+++++|
T Consensus       463 ~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg  541 (681)
T 2pzi_A          463 VGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLA  541 (681)
T ss_dssp             HCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHH
T ss_pred             CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHH
Confidence            577899999999999999999999999999999999999999999999999999999 9999999999999999999999


Q ss_pred             HHHHHhCCHHHHHHHHHHHHhhchhcccchHHH
Q psy11461         90 QALHEINHYDEAVKHLQRAYDLSREQNLNYGDD  122 (253)
Q Consensus        90 ~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~  122 (253)
                      .++..+|++++|+..|+++++++|++...+...
T Consensus       542 ~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~  574 (681)
T 2pzi_A          542 RARSAEGDRVGAVRTLDEVPPTSRHFTTARLTS  574 (681)
T ss_dssp             HHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHhhcccCcccHHHHHHH
Confidence            999999999999999999999999975544433

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.51  E-value=5.4e-13  Score=107.37  Aligned_cols=136  Identities=19%  Similarity=0.146  Sum_probs=109.7

Q ss_pred             CCccc-HHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHH
Q psy11461          9 TNNLS-DKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFF   87 (253)
Q Consensus         9 ~~~~~-a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~   87 (253)
                      .+|.. +..++.+|..++..|++++|+..|.+++..+|.++.++..+|.++...|++++|+..+.+++.++|.+..+++.
T Consensus        31 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~  110 (252)
T 2ho1_A           31 KGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNN  110 (252)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHH
Confidence            34554 88899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCHHHHHHHHHHHHh--hchhcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11461         88 LGQALHEINHYDEAVKHLQRAYD--LSREQNLNYGDDIACQLRIAKKKRWAETEEKRIA  144 (253)
Q Consensus        88 lg~~~~~~~~~~~A~~~~~~al~--l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (253)
                      +|.++...|++++|+..|.+++.  ..|.+...+....................++.+.
T Consensus       111 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~  169 (252)
T 2ho1_A          111 YGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLR  169 (252)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            99999999999999999999999  6666544444333333333333334333333333

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.50  E-value=8.2e-13  Score=111.98  Aligned_cols=107  Identities=15%  Similarity=0.112  Sum_probs=101.9

Q ss_pred             cHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q psy11461         13 SDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQAL   92 (253)
Q Consensus        13 ~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~   92 (253)
                      .+..++.+|..++..|++++|+..|.+++..+|.++.++.++|.++..+|++++|+..+++++.++|++..+++.+|.++
T Consensus        63 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~  142 (368)
T 1fch_A           63 DHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSF  142 (368)
T ss_dssp             TCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence            35678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhCCHHHHHHHHHHHHhhchhcccch
Q psy11461         93 HEINHYDEAVKHLQRAYDLSREQNLNY  119 (253)
Q Consensus        93 ~~~~~~~~A~~~~~~al~l~p~~~~~~  119 (253)
                      ...|++++|+..|.+++.+.|.+....
T Consensus       143 ~~~g~~~~A~~~~~~~~~~~~~~~~~~  169 (368)
T 1fch_A          143 TNESLQRQACEILRDWLRYTPAYAHLV  169 (368)
T ss_dssp             HHTTCHHHHHHHHHHHHHTSTTTGGGC
T ss_pred             HHcCCHHHHHHHHHHHHHhCcCcHHHH
Confidence            999999999999999999999875543

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.49  E-value=1e-12  Score=116.03  Aligned_cols=111  Identities=23%  Similarity=0.361  Sum_probs=103.2

Q ss_pred             ccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q psy11461         12 LSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQA   91 (253)
Q Consensus        12 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~   91 (253)
                      ..+..++..|+.++..|+|++|+..|++++..+| ++.++.++|.|+..+|++++|+..+++++.++|++..+++.+|.+
T Consensus         4 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~   82 (514)
T 2gw1_A            4 KYALALKDKGNQFFRNKKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASA   82 (514)
T ss_dssp             HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHH
Confidence            4678999999999999999999999999999999 699999999999999999999999999999999999999999999


Q ss_pred             HHHhCCHHHHHHHHHHHHhhchhcccchHHHH
Q psy11461         92 LHEINHYDEAVKHLQRAYDLSREQNLNYGDDI  123 (253)
Q Consensus        92 ~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~  123 (253)
                      +..+|++++|+..|.+++.++|.+.......+
T Consensus        83 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~  114 (514)
T 2gw1_A           83 NEGLGKFADAMFDLSVLSLNGDFNDASIEPML  114 (514)
T ss_dssp             HHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHH
T ss_pred             HHHHhhHHHHHHHHHHHHhcCCCccchHHHHH
Confidence            99999999999999999999987654444333

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.49  E-value=9.9e-13  Score=93.60  Aligned_cols=85  Identities=13%  Similarity=0.128  Sum_probs=82.2

Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Q psy11461         32 EAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDL  111 (253)
Q Consensus        32 ~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l  111 (253)
                      .|+..|.+++..+|.++.+++++|.+|...|++++|+..+++++.++|++..+++.+|.++..+|++++|+..|++++++
T Consensus         3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~   82 (115)
T 2kat_A            3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA   82 (115)
T ss_dssp             CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            58899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhcc
Q psy11461        112 SREQN  116 (253)
Q Consensus       112 ~p~~~  116 (253)
                      .|...
T Consensus        83 ~~~~~   87 (115)
T 2kat_A           83 AQSRG   87 (115)
T ss_dssp             HHHHT
T ss_pred             ccccc
Confidence            98753

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.49  E-value=8.1e-13  Score=109.95  Aligned_cols=108  Identities=11%  Similarity=0.069  Sum_probs=75.3

Q ss_pred             CcccHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHH
Q psy11461         10 NNLSDKELKDEGNRYFGLR-QYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFL   88 (253)
Q Consensus        10 ~~~~a~~~~~~g~~~~~~g-~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l   88 (253)
                      .|..+..+..+|..++..| ++++|+.+|.+++..+|.++.++.++|.++...|++++|+..+++++.++|++..+++.+
T Consensus        86 ~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l  165 (330)
T 3hym_B           86 YPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYI  165 (330)
T ss_dssp             CTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHH
T ss_pred             CcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHH
Confidence            3455666677777777777 677777777777777777777777777777777777777777777777777766777777


Q ss_pred             HHHHHHhCCHHHHHHHHHHHHhhchhccc
Q psy11461         89 GQALHEINHYDEAVKHLQRAYDLSREQNL  117 (253)
Q Consensus        89 g~~~~~~~~~~~A~~~~~~al~l~p~~~~  117 (253)
                      |.++...|++++|+..++++++++|.+..
T Consensus       166 ~~~~~~~~~~~~A~~~~~~al~~~~~~~~  194 (330)
T 3hym_B          166 GLEYGLTNNSKLAERFFSQALSIAPEDPF  194 (330)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTTCTTCHH
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHhCCCChH
Confidence            77777777777777777777777666543

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.49  E-value=9e-13  Score=106.04  Aligned_cols=133  Identities=12%  Similarity=0.010  Sum_probs=111.8

Q ss_pred             CcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHh--hCCCcHHHHHH
Q psy11461         10 NNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALE--LEPSLVKAQFF   87 (253)
Q Consensus        10 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~--l~p~~~~a~~~   87 (253)
                      .|..+..+..+|..++..|++++|+..|.+++..+|.++.++.++|.++...|++++|+..+.+++.  .+|.+..+++.
T Consensus        67 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~  146 (252)
T 2ho1_A           67 DPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFEN  146 (252)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHH
T ss_pred             CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHH
Confidence            4667889999999999999999999999999999999999999999999999999999999999999  88999999999


Q ss_pred             HHHHHHHhCCHHHHHHHHHHHHhhchhcccchHHHHHHHHHHHHHHHHHHHHHHH
Q psy11461         88 LGQALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIACQLRIAKKKRWAETEEKR  142 (253)
Q Consensus        88 lg~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (253)
                      +|.++...|++++|+..|.+++++.|.+...+...............+....++.
T Consensus       147 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~  201 (252)
T 2ho1_A          147 LGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLF  201 (252)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            9999999999999999999999999987554444444444443333443333333

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.48  E-value=6.6e-13  Score=110.35  Aligned_cols=106  Identities=19%  Similarity=0.227  Sum_probs=94.1

Q ss_pred             CcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q psy11461         10 NNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLG   89 (253)
Q Consensus        10 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg   89 (253)
                      .|..+..+..+|..+...|++++|+..|.+++..+|.++.++.++|.++...|++++|+..+++++.++|++..+++.+|
T Consensus       168 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~  247 (327)
T 3cv0_A          168 NPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMA  247 (327)
T ss_dssp             STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence            34567888889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461         90 QALHEINHYDEAVKHLQRAYDLSREQ  115 (253)
Q Consensus        90 ~~~~~~~~~~~A~~~~~~al~l~p~~  115 (253)
                      .++..+|++++|+..|++++.+.|.+
T Consensus       248 ~~~~~~g~~~~A~~~~~~a~~~~~~~  273 (327)
T 3cv0_A          248 VSYSNMSQYDLAAKQLVRAIYMQVGG  273 (327)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHhccHHHHHHHHHHHHHhCCcc
Confidence            99999999999999999999988873

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.48  E-value=9e-13  Score=89.19  Aligned_cols=87  Identities=29%  Similarity=0.402  Sum_probs=81.8

Q ss_pred             CcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q psy11461         10 NNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLG   89 (253)
Q Consensus        10 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg   89 (253)
                      .+..+..++.+|..++..|++++|+..|.+++..+|.++.++.++|.++...|++++|+..+++++.++|++..++..+|
T Consensus         5 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~   84 (91)
T 1na3_A            5 PGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLG   84 (91)
T ss_dssp             -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             ccccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence            34578899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhC
Q psy11461         90 QALHEIN   96 (253)
Q Consensus        90 ~~~~~~~   96 (253)
                      .++..+|
T Consensus        85 ~~~~~~g   91 (91)
T 1na3_A           85 NAKQKQG   91 (91)
T ss_dssp             HHHHHHC
T ss_pred             HHHHhcC
Confidence            9988765

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.47  E-value=7.8e-13  Score=105.66  Aligned_cols=108  Identities=16%  Similarity=0.103  Sum_probs=97.8

Q ss_pred             CCCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHH------------------hhCHHH
Q psy11461          8 TTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPS---YFTNRALCYLK------------------LKQYVH   66 (253)
Q Consensus         8 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~---~~~~~a~~~~~------------------~~~~~~   66 (253)
                      +.++....+++.+|.+++..|+|++|+..|.+++..+|+++.   +++.+|.++..                  +|++++
T Consensus        35 p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (225)
T 2yhc_A           35 PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARA  114 (225)
T ss_dssp             TTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHH
T ss_pred             CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHH
Confidence            445556789999999999999999999999999999999864   78999999987                  579999


Q ss_pred             HHHHHHHHHhhCCCcHHHH-----------------HHHHHHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461         67 CCDDCRKALELEPSLVKAQ-----------------FFLGQALHEINHYDEAVKHLQRAYDLSREQ  115 (253)
Q Consensus        67 A~~~~~~al~l~p~~~~a~-----------------~~lg~~~~~~~~~~~A~~~~~~al~l~p~~  115 (253)
                      |+..+++++..+|++..+.                 +.+|.++...|++.+|+..|+++++..|++
T Consensus       115 A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~  180 (225)
T 2yhc_A          115 AFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDT  180 (225)
T ss_dssp             HHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCC
Confidence            9999999999999987554                 678999999999999999999999999986

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.46  E-value=1.4e-12  Score=108.51  Aligned_cols=106  Identities=12%  Similarity=0.005  Sum_probs=101.3

Q ss_pred             CCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHH
Q psy11461          9 TNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFL   88 (253)
Q Consensus         9 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l   88 (253)
                      ..|..+..+..+|..+...|++++|+..|.+++...|.+...+..+|.++...|++++|+..+++++.++|++..+++.+
T Consensus       120 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l  199 (330)
T 3hym_B          120 LEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEV  199 (330)
T ss_dssp             TCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred             hCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHH
Confidence            35667888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCHHHHHHHHHHHHhhchh
Q psy11461         89 GQALHEINHYDEAVKHLQRAYDLSRE  114 (253)
Q Consensus        89 g~~~~~~~~~~~A~~~~~~al~l~p~  114 (253)
                      |.++...|++++|+..+++++++.|.
T Consensus       200 ~~~~~~~~~~~~A~~~~~~a~~~~~~  225 (330)
T 3hym_B          200 GVVAFQNGEWKTAEKWFLDALEKIKA  225 (330)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHcccHHHHHHHHHHHHHHhhh
Confidence            99999999999999999999999754

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.45  E-value=1.1e-12  Score=97.22  Aligned_cols=102  Identities=7%  Similarity=-0.026  Sum_probs=85.4

Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchh
Q psy11461         35 NCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSRE  114 (253)
Q Consensus        35 ~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~  114 (253)
                      ..|.+++..+|.++..++++|.+++..|++++|+..|++++.++|+++.+|+.+|.++..+|++++|+..|++++.++|+
T Consensus         5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~   84 (142)
T 2xcb_A            5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN   84 (142)
T ss_dssp             ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence            56788889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccchHHHHHHHHHHHHHHHHH
Q psy11461        115 QNLNYGDDIACQLRIAKKKRWA  136 (253)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~  136 (253)
                      ++..+.................
T Consensus        85 ~~~~~~~lg~~~~~~g~~~~A~  106 (142)
T 2xcb_A           85 EPRFPFHAAECHLQLGDLDGAE  106 (142)
T ss_dssp             CTHHHHHHHHHHHHTTCHHHHH
T ss_pred             CcHHHHHHHHHHHHcCCHHHHH
Confidence            8765554444444444333333

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.45  E-value=3.2e-13  Score=109.82  Aligned_cols=106  Identities=10%  Similarity=0.069  Sum_probs=68.4

Q ss_pred             cccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHH
Q psy11461         11 NLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVI----PSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQF   86 (253)
Q Consensus        11 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~----~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~   86 (253)
                      |..+..+..+|..++..|++++|+..|.+++. .|.+    +.++.++|.++..+|++++|+..+.+++.++|.+..++.
T Consensus        34 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~  112 (272)
T 3u4t_A           34 YNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYG  112 (272)
T ss_dssp             CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHH
T ss_pred             CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHH
Confidence            34445566666666666666666666666666 3332    233666666666666666666666666666666666666


Q ss_pred             HHHHHHHHhCCHHHHHHHHHHHHhhchhccc
Q psy11461         87 FLGQALHEINHYDEAVKHLQRAYDLSREQNL  117 (253)
Q Consensus        87 ~lg~~~~~~~~~~~A~~~~~~al~l~p~~~~  117 (253)
                      .+|.++..+|++++|+..|+++++++|.+..
T Consensus       113 ~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~  143 (272)
T 3u4t_A          113 QIGSYFYNKGNFPLAIQYMEKQIRPTTTDPK  143 (272)
T ss_dssp             HHHHHHHHTTCHHHHHHHHGGGCCSSCCCHH
T ss_pred             HHHHHHHHccCHHHHHHHHHHHhhcCCCcHH
Confidence            6666666666776676666666666665543

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.45  E-value=6.5e-13  Score=110.30  Aligned_cols=125  Identities=7%  Similarity=-0.082  Sum_probs=100.6

Q ss_pred             cccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q psy11461         11 NLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQ   90 (253)
Q Consensus        11 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~   90 (253)
                      |..+..+..+|..+...|++++|+..|++++..+|+++.++.++|.++..+|++++|+..+++++..+|++...+...+.
T Consensus       114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~  193 (287)
T 3qou_A          114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQI  193 (287)
T ss_dssp             CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHH
T ss_pred             CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHH
Confidence            56678899999999999999999999999999999999999999999999999999999988888888876666677777


Q ss_pred             HHHHhCCHHHHHHHHHHHHhhchhcccchHHHHHHHHHHHHHHHH
Q psy11461         91 ALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIACQLRIAKKKRW  135 (253)
Q Consensus        91 ~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~  135 (253)
                      .+...++.++|+..|++++..+|++...............+...+
T Consensus       194 ~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A  238 (287)
T 3qou_A          194 ELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEA  238 (287)
T ss_dssp             HHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHH
Confidence            777777777788888888888887755444444433333333333

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.45  E-value=2.1e-13  Score=110.90  Aligned_cols=114  Identities=20%  Similarity=0.240  Sum_probs=99.3

Q ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCc----HHHHHHHH
Q psy11461         14 DKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSL----VKAQFFLG   89 (253)
Q Consensus        14 a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~----~~a~~~lg   89 (253)
                      +..++..|..++..|+|++|+..|.+++..+|.++.++.++|.++..+|++++|+..+.+++. .|.+    ..+++.+|
T Consensus         3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg   81 (272)
T 3u4t_A            3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYG   81 (272)
T ss_dssp             --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHH
Confidence            467889999999999999999999999999999999999999999999999999999999999 4443    45699999


Q ss_pred             HHHHHhCCHHHHHHHHHHHHhhchhcccchHHHHHHHHH
Q psy11461         90 QALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIACQLR  128 (253)
Q Consensus        90 ~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~  128 (253)
                      .++..+|++++|+..|.++++++|.+...+.........
T Consensus        82 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~  120 (272)
T 3u4t_A           82 KILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYN  120 (272)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHH
T ss_pred             HHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH
Confidence            999999999999999999999999986554444433333

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.45  E-value=1.6e-12  Score=109.12  Aligned_cols=112  Identities=14%  Similarity=0.093  Sum_probs=96.6

Q ss_pred             CcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCC---CcHHHHH
Q psy11461         10 NNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEP---SLVKAQF   86 (253)
Q Consensus        10 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p---~~~~a~~   86 (253)
                      .|..+..+..+|..++..|++++|+..|.+++..+|.++.++..+|.++...|++++|+..+++++.++|   ++..++.
T Consensus        33 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~  112 (359)
T 3ieg_A           33 DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAES  112 (359)
T ss_dssp             CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHH
Confidence            4667888999999999999999999999999999999999999999999999999999999999999999   8888877


Q ss_pred             HH------------HHHHHHhCCHHHHHHHHHHHHhhchhcccchHH
Q psy11461         87 FL------------GQALHEINHYDEAVKHLQRAYDLSREQNLNYGD  121 (253)
Q Consensus        87 ~l------------g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~  121 (253)
                      .+            |.++...|++++|+..+.++++..|.+...+..
T Consensus       113 ~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~  159 (359)
T 3ieg_A          113 QLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELREL  159 (359)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHH
Confidence            77            688888888888888888888888877544433

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.44  E-value=3.7e-12  Score=106.02  Aligned_cols=110  Identities=8%  Similarity=-0.138  Sum_probs=66.2

Q ss_pred             cccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHH--HHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHH
Q psy11461         11 NLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRA--LCYLKLKQYVHCCDDCRKALELEPSLVKAQFFL   88 (253)
Q Consensus        11 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a--~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l   88 (253)
                      |.....+..+|..+...|++++|+..|++++..+|++.......+  .++...|++++|+..+++++..+|+++.+++.+
T Consensus       127 ~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~l  206 (291)
T 3mkr_A          127 GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQ  206 (291)
T ss_dssp             CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence            344556666666666666666666666666666666543322222  112223566666666666666666666666667


Q ss_pred             HHHHHHhCCHHHHHHHHHHHHhhchhcccchH
Q psy11461         89 GQALHEINHYDEAVKHLQRAYDLSREQNLNYG  120 (253)
Q Consensus        89 g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~  120 (253)
                      |.++..+|++++|+..|+++++++|+++..+.
T Consensus       207 a~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~  238 (291)
T 3mkr_A          207 AACHMAQGRWEAAEGVLQEALDKDSGHPETLI  238 (291)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence            77777777777777777777777666644433

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.44  E-value=2.7e-12  Score=96.32  Aligned_cols=105  Identities=14%  Similarity=0.154  Sum_probs=96.4

Q ss_pred             CcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q psy11461         10 NNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLG   89 (253)
Q Consensus        10 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg   89 (253)
                      .|..+..+..+|..++..|+|++|+..|.+++..+|.++.++.++|.++..+|++++|+..+.+++.++|.+..++..++
T Consensus        43 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~  122 (166)
T 1a17_A           43 NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQ  122 (166)
T ss_dssp             STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred             CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999999886655


Q ss_pred             HH--HHHhCCHHHHHHHHHHHHhhchh
Q psy11461         90 QA--LHEINHYDEAVKHLQRAYDLSRE  114 (253)
Q Consensus        90 ~~--~~~~~~~~~A~~~~~~al~l~p~  114 (253)
                      .+  +...|++++|+..+.++..+.+.
T Consensus       123 ~~~~~~~~~~~~~A~~~~~~~~~~~~~  149 (166)
T 1a17_A          123 ECNKIVKQKAFERAIAGDEHKRSVVDS  149 (166)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcccchHHHhcc
Confidence            55  88889999999999998877544

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.43  E-value=2.8e-12  Score=106.50  Aligned_cols=107  Identities=12%  Similarity=0.047  Sum_probs=102.0

Q ss_pred             ccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q psy11461         12 LSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQA   91 (253)
Q Consensus        12 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~   91 (253)
                      ..+..++.+|..++..|++++|+..|.+++..+|.++.++..+|.++...|++++|+..+++++.++|.+..+++.+|.+
T Consensus        19 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~   98 (327)
T 3cv0_A           19 MYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVS   98 (327)
T ss_dssp             GGSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHH
Confidence            45677899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCHHHHHHHHHHHHhhchhcccc
Q psy11461         92 LHEINHYDEAVKHLQRAYDLSREQNLN  118 (253)
Q Consensus        92 ~~~~~~~~~A~~~~~~al~l~p~~~~~  118 (253)
                      +...|++++|+..+.++++.+|.+...
T Consensus        99 ~~~~~~~~~A~~~~~~~~~~~~~~~~~  125 (327)
T 3cv0_A           99 HTNEHNANAALASLRAWLLSQPQYEQL  125 (327)
T ss_dssp             HHHTTCHHHHHHHHHHHHHTSTTTTTC
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCccHHH
Confidence            999999999999999999999987543

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.43  E-value=4.9e-13  Score=102.36  Aligned_cols=99  Identities=14%  Similarity=0.135  Sum_probs=87.9

Q ss_pred             HHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHH-HHHhCCH
Q psy11461         20 EGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQA-LHEINHY   98 (253)
Q Consensus        20 ~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~-~~~~~~~   98 (253)
                      .+..++..|++++|+..|.+++..+|.++.++..+|.+|...|++++|+..+.+++.++|++..+++.+|.+ +...|++
T Consensus        16 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~   95 (177)
T 2e2e_A           16 PLHQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQH   95 (177)
T ss_dssp             TTCCCC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTC
T ss_pred             hhhhhhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCc
Confidence            344567789999999999999999999999999999999999999999999999999999999999999999 8899999


Q ss_pred             --HHHHHHHHHHHhhchhcccc
Q psy11461         99 --DEAVKHLQRAYDLSREQNLN  118 (253)
Q Consensus        99 --~~A~~~~~~al~l~p~~~~~  118 (253)
                        ++|+..|.++++++|++...
T Consensus        96 ~~~~A~~~~~~al~~~p~~~~~  117 (177)
T 2e2e_A           96 MTAQTRAMIDKALALDSNEITA  117 (177)
T ss_dssp             CCHHHHHHHHHHHHHCTTCHHH
T ss_pred             chHHHHHHHHHHHHhCCCcHHH
Confidence              99999999999999987443

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.42  E-value=3.8e-12  Score=113.25  Aligned_cols=108  Identities=17%  Similarity=0.131  Sum_probs=78.3

Q ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q psy11461         14 DKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALH   93 (253)
Q Consensus        14 a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~   93 (253)
                      +..+..+|..++..|++++|+..|.+++..+|.++.++.++|.++...|++++|+..+++++.++|++..+++.+|.++.
T Consensus       276 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~  355 (537)
T 3fp2_A          276 PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLY  355 (537)
T ss_dssp             HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            56666777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HhCCHHHHHHHHHHHHhhchhcccchHH
Q psy11461         94 EINHYDEAVKHLQRAYDLSREQNLNYGD  121 (253)
Q Consensus        94 ~~~~~~~A~~~~~~al~l~p~~~~~~~~  121 (253)
                      ..|++++|+..|.++++.+|++...+..
T Consensus       356 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~  383 (537)
T 3fp2_A          356 KQGKFTESEAFFNETKLKFPTLPEVPTF  383 (537)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCTHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhCCCChHHHHH
Confidence            7777777777777777777766544333

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.42  E-value=9e-12  Score=101.10  Aligned_cols=103  Identities=13%  Similarity=0.070  Sum_probs=85.7

Q ss_pred             CcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q psy11461         10 NNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLG   89 (253)
Q Consensus        10 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg   89 (253)
                      .|..+..+..+|..++..|++++|+.+|.+++..+|.++.++.++|.++..+|++++|+..+++++.++|++......++
T Consensus        73 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~  152 (275)
T 1xnf_A           73 RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLY  152 (275)
T ss_dssp             CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence            46678899999999999999999999999999999999999999999999999999999999999999999875554444


Q ss_pred             HHHHHhCCHHHHHHHHHHHHhhch
Q psy11461         90 QALHEINHYDEAVKHLQRAYDLSR  113 (253)
Q Consensus        90 ~~~~~~~~~~~A~~~~~~al~l~p  113 (253)
                      .+ ...|++++|+..+.+++...|
T Consensus       153 ~~-~~~~~~~~A~~~~~~~~~~~~  175 (275)
T 1xnf_A          153 LA-EQKLDEKQAKEVLKQHFEKSD  175 (275)
T ss_dssp             HH-HHHHCHHHHHHHHHHHHHHSC
T ss_pred             HH-HHhcCHHHHHHHHHHHHhcCC
Confidence            33 444666666666655555433

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.42  E-value=6.4e-12  Score=111.79  Aligned_cols=109  Identities=20%  Similarity=0.208  Sum_probs=104.6

Q ss_pred             CcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q psy11461         10 NNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLG   89 (253)
Q Consensus        10 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg   89 (253)
                      .|..+..+..+|..++..|++++|+..|.+++..+|.++.++.++|.++..+|++++|+..+.+++.++|++..+++.+|
T Consensus       306 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~  385 (537)
T 3fp2_A          306 NPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFA  385 (537)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence            46678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCHHHHHHHHHHHHhhchhcccc
Q psy11461         90 QALHEINHYDEAVKHLQRAYDLSREQNLN  118 (253)
Q Consensus        90 ~~~~~~~~~~~A~~~~~~al~l~p~~~~~  118 (253)
                      .++...|++++|+..|+++++++|++...
T Consensus       386 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~  414 (537)
T 3fp2_A          386 EILTDRGDFDTAIKQYDIAKRLEEVQEKI  414 (537)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHCSSC
T ss_pred             HHHHHhCCHHHHHHHHHHHHHcCCcchhh
Confidence            99999999999999999999999987543

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.42  E-value=3.3e-12  Score=115.64  Aligned_cols=110  Identities=12%  Similarity=-0.043  Sum_probs=105.4

Q ss_pred             CCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHH
Q psy11461          9 TNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFL   88 (253)
Q Consensus         9 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l   88 (253)
                      .+|..+..+..+|..+...|++++|+.+|.+++..+|.++.++.++|.+|..+|++++|+..++++++++|++..+++.+
T Consensus        52 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  131 (568)
T 2vsy_A           52 LHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQL  131 (568)
T ss_dssp             TSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            45778999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHh---CCHHHHHHHHHHHHhhchhcccc
Q psy11461         89 GQALHEI---NHYDEAVKHLQRAYDLSREQNLN  118 (253)
Q Consensus        89 g~~~~~~---~~~~~A~~~~~~al~l~p~~~~~  118 (253)
                      |.++..+   |++++|+..++++++.+|++...
T Consensus       132 ~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~  164 (568)
T 2vsy_A          132 LNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEP  164 (568)
T ss_dssp             HHHHHHTTCCTTHHHHHHHHHHHHHHTCCCSCH
T ss_pred             HHHHHHhhccccHHHHHHHHHHHHhcCCcccCh
Confidence            9999999   99999999999999999987543

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=99.41  E-value=6.8e-13  Score=91.73  Aligned_cols=93  Identities=14%  Similarity=0.134  Sum_probs=85.4

Q ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHh
Q psy11461         17 LKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPS-YFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEI   95 (253)
Q Consensus        17 ~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~-~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~   95 (253)
                      .+..|..++..|+|++|+..|.+++..+|.++. ++.++|.+|..+|++++|+..|++++.++|++..++.+        
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------   74 (99)
T 2kc7_A            3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------   74 (99)
T ss_dssp             THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------
Confidence            467899999999999999999999999999999 99999999999999999999999999999999988854        


Q ss_pred             CCHHHHHHHHHHHHhhchhccc
Q psy11461         96 NHYDEAVKHLQRAYDLSREQNL  117 (253)
Q Consensus        96 ~~~~~A~~~~~~al~l~p~~~~  117 (253)
                      +.+.+++..|.++...+|++..
T Consensus        75 ~~~~~a~~~~~~~~~~~p~~~~   96 (99)
T 2kc7_A           75 KMVMDILNFYNKDMYNQLEHHH   96 (99)
T ss_dssp             HHHHHHHHHHCCTTHHHHCCSS
T ss_pred             HHHHHHHHHHHHHhccCccccc
Confidence            6678899999999999988643

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.41  E-value=3.2e-12  Score=103.66  Aligned_cols=103  Identities=21%  Similarity=0.258  Sum_probs=95.9

Q ss_pred             CCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhh---
Q psy11461          9 TNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIK--------NPVIPSYFTNRALCYLKLKQYVHCCDDCRKALEL---   77 (253)
Q Consensus         9 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l---   77 (253)
                      .+|..+..+..+|..++..|++++|+.+|.+++..        +|..+.++.++|.+|..+|++++|+..+.+++.+   
T Consensus        38 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~  117 (283)
T 3edt_B           38 DHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK  117 (283)
T ss_dssp             SSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence            44778899999999999999999999999999988        3666789999999999999999999999999998   


Q ss_pred             -----CCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Q psy11461         78 -----EPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDL  111 (253)
Q Consensus        78 -----~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l  111 (253)
                           +|....+++.+|.++..+|++++|+..|++++++
T Consensus       118 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  156 (283)
T 3edt_B          118 VLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEI  156 (283)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             HcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence                 5778899999999999999999999999999998

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.41  E-value=3.6e-12  Score=106.11  Aligned_cols=95  Identities=13%  Similarity=0.095  Sum_probs=89.1

Q ss_pred             HHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhCCHHH-
Q psy11461         22 NRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDE-  100 (253)
Q Consensus        22 ~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~~~~~~-  100 (253)
                      +.+...|++++|+.+|++++..+|.++.+++++|.++.++|++++|+..+++++.++|+++.+++++|.++..+|++.+ 
T Consensus       174 ~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~ea  253 (291)
T 3mkr_A          174 SLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEV  253 (291)
T ss_dssp             HHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHH
T ss_pred             HHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHH
Confidence            4445669999999999999999999999999999999999999999999999999999999999999999999999976 


Q ss_pred             HHHHHHHHHhhchhcc
Q psy11461        101 AVKHLQRAYDLSREQN  116 (253)
Q Consensus       101 A~~~~~~al~l~p~~~  116 (253)
                      +..+++++++++|+++
T Consensus       254 a~~~~~~~~~~~P~~~  269 (291)
T 3mkr_A          254 TNRYLSQLKDAHRSHP  269 (291)
T ss_dssp             HHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHhCCCCh
Confidence            5789999999999983

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.39  E-value=4.7e-12  Score=107.53  Aligned_cols=98  Identities=15%  Similarity=0.125  Sum_probs=92.8

Q ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q psy11461         14 DKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALH   93 (253)
Q Consensus        14 a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~   93 (253)
                      +..+.++|.+++..|+|++|+.+|.+++.++|.++.+++++|.+|..+|++++|+.+|++++.++|++..++..+|.++.
T Consensus       196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~  275 (336)
T 1p5q_A          196 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQ  275 (336)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhCCHHHH-HHHHHHHHhh
Q psy11461         94 EINHYDEA-VKHLQRAYDL  111 (253)
Q Consensus        94 ~~~~~~~A-~~~~~~al~l  111 (253)
                      .+|++++| ...|.+.+..
T Consensus       276 ~~~~~~~a~~~~~~~~~~~  294 (336)
T 1p5q_A          276 RIRRQLAREKKLYANMFER  294 (336)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            99999998 4567766654

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.39  E-value=3.9e-12  Score=97.58  Aligned_cols=104  Identities=13%  Similarity=0.051  Sum_probs=56.6

Q ss_pred             cccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HhhCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q psy11461         11 NLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYL-KLKQYVHCCDDCRKALELEPSLVKAQFFLG   89 (253)
Q Consensus        11 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~-~~~~~~~A~~~~~~al~l~p~~~~a~~~lg   89 (253)
                      |.++..++.+|..+...|++++|+..|.+++..+| ++.++..++.+.. ..+...+|+..+++++.++|+++.+++.+|
T Consensus        37 P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la  115 (176)
T 2r5s_A           37 QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELA  115 (176)
T ss_dssp             HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHH
Confidence            34444444444444444444444444444444444 4433333332211 112222345555556666677777777777


Q ss_pred             HHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461         90 QALHEINHYDEAVKHLQRAYDLSREQ  115 (253)
Q Consensus        90 ~~~~~~~~~~~A~~~~~~al~l~p~~  115 (253)
                      .++...|++++|+..|+++++++|+.
T Consensus       116 ~~~~~~g~~~~A~~~~~~~l~~~p~~  141 (176)
T 2r5s_A          116 VQYNQVGRDEEALELLWNILKVNLGA  141 (176)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTTCTTT
T ss_pred             HHHHHcccHHHHHHHHHHHHHhCccc
Confidence            77777777777777777777777654

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=99.38  E-value=5.3e-12  Score=87.90  Aligned_cols=74  Identities=19%  Similarity=0.277  Sum_probs=63.5

Q ss_pred             hCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhcc
Q psy11461         43 KNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQN  116 (253)
Q Consensus        43 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~  116 (253)
                      .+|+++.+++++|.+|..+|++++|+..++++++++|+++.+++.+|.++..+|++++|+..|++++++.|...
T Consensus         2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~   75 (100)
T 3ma5_A            2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEG   75 (100)
T ss_dssp             ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHS
T ss_pred             CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCC
Confidence            36888889999999999999999999999999999999999999999999999999999999999998887653

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.38  E-value=4e-12  Score=105.50  Aligned_cols=107  Identities=11%  Similarity=-0.001  Sum_probs=101.8

Q ss_pred             CCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHH
Q psy11461          9 TNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFL   88 (253)
Q Consensus         9 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l   88 (253)
                      .+|.++.++..+|..+...|++++|+..|.+++..+|+......+.+..+...++.++|+..+++++.++|++..+++.+
T Consensus       146 ~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~l  225 (287)
T 3qou_A          146 LSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQL  225 (287)
T ss_dssp             HTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             hCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHH
Confidence            46788999999999999999999999999999999998777888888889999999999999999999999999999999


Q ss_pred             HHHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461         89 GQALHEINHYDEAVKHLQRAYDLSREQ  115 (253)
Q Consensus        89 g~~~~~~~~~~~A~~~~~~al~l~p~~  115 (253)
                      |.++...|++++|+..|.++++.+|++
T Consensus       226 a~~l~~~g~~~~A~~~l~~~l~~~p~~  252 (287)
T 3qou_A          226 ALQLHQVGRNEEALELLFGHLRXDLTA  252 (287)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTG
T ss_pred             HHHHHHcccHHHHHHHHHHHHhccccc
Confidence            999999999999999999999999986

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.38  E-value=1.6e-11  Score=110.75  Aligned_cols=120  Identities=14%  Similarity=0.096  Sum_probs=91.8

Q ss_pred             CcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q psy11461         10 NNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLG   89 (253)
Q Consensus        10 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg   89 (253)
                      .|..+..+..+|..+.+.|++++|+..|.+++..+|.++.+|..+|.+|.+.|++++|+..+++++.++|++..++..+|
T Consensus       369 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~  448 (597)
T 2xpi_A          369 HPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLG  448 (597)
T ss_dssp             CTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHH
Confidence            35567777788888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHhCCHHHHHHHHHHHHhhchhcccchHHHHHHHHHH
Q psy11461         90 QALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIACQLRI  129 (253)
Q Consensus        90 ~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~  129 (253)
                      .++...|++++|+..|++++++.|.+...+...+....+.
T Consensus       449 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~  488 (597)
T 2xpi_A          449 MQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNK  488 (597)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHT
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh
Confidence            8888888888888888888888777654444333333333

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.38  E-value=1.7e-12  Score=107.93  Aligned_cols=105  Identities=11%  Similarity=-0.059  Sum_probs=81.8

Q ss_pred             ccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHh-hCHHHHHHHHHHHHhhCCCc---
Q psy11461         12 LSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVI------PSYFTNRALCYLKL-KQYVHCCDDCRKALELEPSL---   81 (253)
Q Consensus        12 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~------~~~~~~~a~~~~~~-~~~~~A~~~~~~al~l~p~~---   81 (253)
                      ..+..+.++|.++...|++++|+.+|.+|+.+.|..      +.++.++|.+|... |++++|+.+|++|+.+.|..   
T Consensus        75 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~  154 (292)
T 1qqe_A           75 EAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSV  154 (292)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCCh
Confidence            346778888888888888888888888888876643      45778888888885 88888888888888877653   


Q ss_pred             ---HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhcc
Q psy11461         82 ---VKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQN  116 (253)
Q Consensus        82 ---~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~  116 (253)
                         ..++..+|.++..+|++++|+..|++++++.|++.
T Consensus       155 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~  192 (292)
T 1qqe_A          155 ALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNR  192 (292)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCT
T ss_pred             HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCC
Confidence               45677888888888888888888888888877764

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.37  E-value=4.4e-13  Score=102.92  Aligned_cols=122  Identities=9%  Similarity=-0.016  Sum_probs=98.0

Q ss_pred             ccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q psy11461         12 LSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQA   91 (253)
Q Consensus        12 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~   91 (253)
                      .....++.+|..++..|++++|+..|++++..+|+++.++.++|.++...|++++|+..+++++.++| ++..+..++.+
T Consensus         4 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~   82 (176)
T 2r5s_A            4 SPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKL   82 (176)
T ss_dssp             --CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHH
Confidence            33456889999999999999999999999999999999999999999999999999999999999999 88777666655


Q ss_pred             HH-HhCCHHHHHHHHHHHHhhchhcccchHHHHHHHHHHHHHHH
Q psy11461         92 LH-EINHYDEAVKHLQRAYDLSREQNLNYGDDIACQLRIAKKKR  134 (253)
Q Consensus        92 ~~-~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~  134 (253)
                      .. ..+...+|+..|+++++++|++...+...............
T Consensus        83 ~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~  126 (176)
T 2r5s_A           83 ELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEE  126 (176)
T ss_dssp             HHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHH
Confidence            33 33444568999999999999986554444444333333333

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.37  E-value=1.5e-11  Score=102.82  Aligned_cols=110  Identities=13%  Similarity=-0.005  Sum_probs=100.5

Q ss_pred             CcccHHHHHHHHHHHHh-------ccCH-------HHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHH
Q psy11461         10 NNLSDKELKDEGNRYFG-------LRQY-------EEAINCYTRAII-KNPVIPSYFTNRALCYLKLKQYVHCCDDCRKA   74 (253)
Q Consensus        10 ~~~~a~~~~~~g~~~~~-------~g~~-------~~A~~~y~~ai~-~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a   74 (253)
                      .|..+..|+.+|..+..       .|++       ++|+..|.+|+. ++|+++.+|.++|.++...|++++|...|+++
T Consensus        46 ~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a  125 (308)
T 2ond_A           46 LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRL  125 (308)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            47788999999998874       5885       999999999999 79999999999999999999999999999999


Q ss_pred             HhhCCCcHH-HHHHHHHHHHHhCCHHHHHHHHHHHHhhchhcccch
Q psy11461         75 LELEPSLVK-AQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNY  119 (253)
Q Consensus        75 l~l~p~~~~-a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~~~~  119 (253)
                      ++++|.+.. +|..+|.++...|++++|+..|.+|++.+|.....+
T Consensus       126 l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~  171 (308)
T 2ond_A          126 LAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVY  171 (308)
T ss_dssp             HTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHH
T ss_pred             HhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHH
Confidence            999999987 999999999999999999999999999998764433

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.36  E-value=1.2e-11  Score=89.18  Aligned_cols=82  Identities=11%  Similarity=0.103  Sum_probs=72.7

Q ss_pred             CCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhcccchHHHHH
Q psy11461         45 PVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIA  124 (253)
Q Consensus        45 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~  124 (253)
                      |..+..+.++|.+++..|+|++|+..|.+++.++|+++.+++.+|.++..+|++++|+..|+++++++|++...+.....
T Consensus         1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~   80 (126)
T 3upv_A            1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKAT   80 (126)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence            34567899999999999999999999999999999999999999999999999999999999999999998554444333


Q ss_pred             HH
Q psy11461        125 CQ  126 (253)
Q Consensus       125 ~~  126 (253)
                      ..
T Consensus        81 ~~   82 (126)
T 3upv_A           81 AQ   82 (126)
T ss_dssp             HH
T ss_pred             HH
Confidence            33

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.36  E-value=2.4e-11  Score=88.39  Aligned_cols=74  Identities=20%  Similarity=0.231  Sum_probs=68.8

Q ss_pred             CHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhcccchH
Q psy11461         47 IPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNYG  120 (253)
Q Consensus        47 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~  120 (253)
                      .+.++.++|.++++.|+|++|+..|.+|++++|+++.+++++|.++..+|++++|+..|.++++++|++...+.
T Consensus         7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~   80 (127)
T 4gcn_A            7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYK   80 (127)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhH
Confidence            35678899999999999999999999999999999999999999999999999999999999999998765443

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.36  E-value=1.5e-11  Score=111.08  Aligned_cols=105  Identities=13%  Similarity=0.024  Sum_probs=99.0

Q ss_pred             CcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q psy11461         10 NNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLG   89 (253)
Q Consensus        10 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg   89 (253)
                      .|.....+..+|..+...|++++|+..|.+++...|.++.++..+|.+|.+.|++++|+..+++++.++|.++.++..+|
T Consensus       403 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~  482 (597)
T 2xpi_A          403 DPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELG  482 (597)
T ss_dssp             CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence            46678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCHHHHHHHHHHHHhhchh
Q psy11461         90 QALHEINHYDEAVKHLQRAYDLSRE  114 (253)
Q Consensus        90 ~~~~~~~~~~~A~~~~~~al~l~p~  114 (253)
                      .++...|++++|+..|++++++.|+
T Consensus       483 ~~~~~~g~~~~A~~~~~~~~~~~~~  507 (597)
T 2xpi_A          483 VVAFNKSDMQTAINHFQNALLLVKK  507 (597)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCHHHHHHHHHHHHHhhhc
Confidence            9999999999999999999999654

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.35  E-value=6.2e-12  Score=104.45  Aligned_cols=104  Identities=16%  Similarity=0.020  Sum_probs=91.0

Q ss_pred             cHHHHHHHHHHHHhc-cCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHH--
Q psy11461         13 SDKELKDEGNRYFGL-RQYEEAINCYTRAIIKNPVI------PSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVK--   83 (253)
Q Consensus        13 ~a~~~~~~g~~~~~~-g~~~~A~~~y~~ai~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~--   83 (253)
                      .+..+.++|..+... |++++|+.+|.+|+.+.|..      ..++.++|.++..+|++++|+..|++++.+.|++..  
T Consensus       116 ~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  195 (292)
T 1qqe_A          116 GANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQ  195 (292)
T ss_dssp             HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTG
T ss_pred             HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCccc
Confidence            467889999999996 99999999999999998754      567999999999999999999999999999987643  


Q ss_pred             -----HHHHHHHHHHHhCCHHHHHHHHHHHHhhchhcc
Q psy11461         84 -----AQFFLGQALHEINHYDEAVKHLQRAYDLSREQN  116 (253)
Q Consensus        84 -----a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~  116 (253)
                           +++.+|.++..+|++++|+.+|+++++++|+..
T Consensus       196 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~  233 (292)
T 1qqe_A          196 WSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFA  233 (292)
T ss_dssp             GGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Confidence                 688999999999999999999999999999864

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.34  E-value=1.3e-11  Score=108.97  Aligned_cols=139  Identities=16%  Similarity=0.146  Sum_probs=115.1

Q ss_pred             CCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHH
Q psy11461          9 TNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFL   88 (253)
Q Consensus         9 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l   88 (253)
                      ..|..+..+..+|..++..|++++|+..|.+++..+|.++.++.++|.++...|++++|+..+.+++.++|++..+++.+
T Consensus       299 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l  378 (514)
T 2gw1_A          299 LDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFF  378 (514)
T ss_dssp             TCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHH
T ss_pred             cCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHH
Confidence            45667788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCHHHHHHHHHHHHhhchhccc------chHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Q psy11461         89 GQALHEINHYDEAVKHLQRAYDLSREQNL------NYGDDIACQLR---IAKKKRWAETEEKRIAQEI  147 (253)
Q Consensus        89 g~~~~~~~~~~~A~~~~~~al~l~p~~~~------~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~  147 (253)
                      |.++...|++++|+..|.+++++.|.+..      .+.........   ...........++.+...|
T Consensus       379 a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~  446 (514)
T 2gw1_A          379 AEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDP  446 (514)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCc
Confidence            99999999999999999999999998754      33334444444   4444444444444444333

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.33  E-value=3.6e-11  Score=100.48  Aligned_cols=110  Identities=9%  Similarity=-0.098  Sum_probs=99.4

Q ss_pred             CcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHH
Q psy11461         10 NNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPS-YFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFL   88 (253)
Q Consensus        10 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~-~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l   88 (253)
                      .|..+..|..+|..+...|++++|+..|++++..+|.++. +|.++|.++...|++++|+..|+++++++|.+..++...
T Consensus        95 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~  174 (308)
T 2ond_A           95 LKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTA  174 (308)
T ss_dssp             TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHH
T ss_pred             CcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence            5778899999999999999999999999999999999987 999999999999999999999999999999998887766


Q ss_pred             HHHHHH-hCCHHHHHHHHHHHHhhchhcccch
Q psy11461         89 GQALHE-INHYDEAVKHLQRAYDLSREQNLNY  119 (253)
Q Consensus        89 g~~~~~-~~~~~~A~~~~~~al~l~p~~~~~~  119 (253)
                      +..... .|++++|...|+++++++|++...+
T Consensus       175 a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  206 (308)
T 2ond_A          175 ALMEYYCSKDKSVAFKIFELGLKKYGDIPEYV  206 (308)
T ss_dssp             HHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH
Confidence            655443 7999999999999999999874433

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.33  E-value=2.1e-11  Score=87.25  Aligned_cols=89  Identities=22%  Similarity=0.236  Sum_probs=85.2

Q ss_pred             CcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q psy11461         10 NNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLG   89 (253)
Q Consensus        10 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg   89 (253)
                      .|..+..+..+|..++..|++++|+.+|.+++..+|.++.++.++|.++..+|++++|+..+.+++.++|++..+++.+|
T Consensus        42 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~  121 (131)
T 2vyi_A           42 NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLK  121 (131)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHH
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCH
Q psy11461         90 QALHEINHY   98 (253)
Q Consensus        90 ~~~~~~~~~   98 (253)
                      .++..+|++
T Consensus       122 ~~~~~~~~~  130 (131)
T 2vyi_A          122 IAELKLREA  130 (131)
T ss_dssp             HHHHHHTTC
T ss_pred             HHHHHHhcC
Confidence            999998875

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.31  E-value=9.6e-12  Score=100.86  Aligned_cols=108  Identities=19%  Similarity=0.203  Sum_probs=99.9

Q ss_pred             CCCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhh--
Q psy11461          8 TTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIK--------NPVIPSYFTNRALCYLKLKQYVHCCDDCRKALEL--   77 (253)
Q Consensus         8 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l--   77 (253)
                      ...+..+..+..+|..++..|++++|+.+|.+++..        +|....++.++|.++..+|++++|+..+++++.+  
T Consensus        79 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  158 (283)
T 3edt_B           79 KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYA  158 (283)
T ss_dssp             TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred             CcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            345778889999999999999999999999999998        4677889999999999999999999999999999  


Q ss_pred             ------CCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461         78 ------EPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQ  115 (253)
Q Consensus        78 ------~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~  115 (253)
                            +|....++..+|.++..+|++++|+..+.+++++.+..
T Consensus       159 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~  202 (283)
T 3edt_B          159 TRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEK  202 (283)
T ss_dssp             HHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred             HhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence                  78888999999999999999999999999999987653

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.31  E-value=2.7e-11  Score=87.20  Aligned_cols=89  Identities=20%  Similarity=0.224  Sum_probs=84.7

Q ss_pred             CCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHH
Q psy11461          9 TNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFL   88 (253)
Q Consensus         9 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l   88 (253)
                      ..|..+..+..+|..++..|++++|+..|.+++..+|.++.++.++|.++..+|++++|+..+.+++.++|.+..+++.+
T Consensus        45 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l  124 (133)
T 2lni_A           45 RNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGY  124 (133)
T ss_dssp             TCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHH
T ss_pred             cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHH
Confidence            45667899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCC
Q psy11461         89 GQALHEINH   97 (253)
Q Consensus        89 g~~~~~~~~   97 (253)
                      |.++..+|+
T Consensus       125 ~~~~~~~~~  133 (133)
T 2lni_A          125 QRCMMAQYN  133 (133)
T ss_dssp             HHHHHHHTC
T ss_pred             HHHHHHhcC
Confidence            999988774

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.31  E-value=1e-11  Score=88.75  Aligned_cols=82  Identities=12%  Similarity=0.062  Sum_probs=75.8

Q ss_pred             CcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q psy11461         10 NNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLG   89 (253)
Q Consensus        10 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg   89 (253)
                      +|..+..+..+|.+++..|+|++|+.+|.+++..+|+++.++.++|.++..+|++++|+..+++++.++|+++.......
T Consensus        23 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~  102 (117)
T 3k9i_A           23 GKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQSYKQ  102 (117)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHTHH
T ss_pred             CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence            57889999999999999999999999999999999999999999999999999999999999999999999987665443


Q ss_pred             HH
Q psy11461         90 QA   91 (253)
Q Consensus        90 ~~   91 (253)
                      .+
T Consensus       103 ai  104 (117)
T 3k9i_A          103 AI  104 (117)
T ss_dssp             HH
T ss_pred             HH
Confidence            33

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.30  E-value=1.8e-10  Score=83.81  Aligned_cols=88  Identities=11%  Similarity=0.058  Sum_probs=75.6

Q ss_pred             HhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhcccchHH
Q psy11461         42 IKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNYGD  121 (253)
Q Consensus        42 ~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~  121 (253)
                      ..+|.++..+..+|.+++..|+|++|+..+.+++.++|++..+++.+|.++..+|++++|+..|+++++++|++...+..
T Consensus         3 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~   82 (137)
T 3q49_B            3 HMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFF   82 (137)
T ss_dssp             ---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CCccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHH
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999997554444


Q ss_pred             HHHHHHHH
Q psy11461        122 DIACQLRI  129 (253)
Q Consensus       122 ~~~~~~~~  129 (253)
                      ........
T Consensus        83 l~~~~~~~   90 (137)
T 3q49_B           83 LGQCQLEM   90 (137)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHH
Confidence            33333333

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.30  E-value=5.4e-11  Score=104.36  Aligned_cols=109  Identities=11%  Similarity=-0.026  Sum_probs=94.0

Q ss_pred             CcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhC--
Q psy11461         10 NNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIK---------NPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELE--   78 (253)
Q Consensus        10 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~---------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~--   78 (253)
                      .+..+..+..+|.++...|++++|+++|++|+.+         +|.....|.|+|.+|..+|++++|+.++++++.+.  
T Consensus        47 ~~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~  126 (472)
T 4g1t_A           47 REFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEK  126 (472)
T ss_dssp             ---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHh
Confidence            3455778889999999999999999999999986         67788899999999999999999999999999873  


Q ss_pred             ------CCcHHHHHHHHHHHHHhC--CHHHHHHHHHHHHhhchhcccc
Q psy11461         79 ------PSLVKAQFFLGQALHEIN--HYDEAVKHLQRAYDLSREQNLN  118 (253)
Q Consensus        79 ------p~~~~a~~~lg~~~~~~~--~~~~A~~~~~~al~l~p~~~~~  118 (253)
                            +..+.++..+|.++...|  +|++|+.+|++|++++|+++..
T Consensus       127 ~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~  174 (472)
T 4g1t_A          127 FSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEF  174 (472)
T ss_dssp             SCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHH
T ss_pred             cccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHH
Confidence                  356788999998887765  6999999999999999998653

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.30  E-value=2.8e-12  Score=114.04  Aligned_cols=107  Identities=15%  Similarity=0.174  Sum_probs=96.8

Q ss_pred             CcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q psy11461         10 NNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLG   89 (253)
Q Consensus        10 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg   89 (253)
                      +|..+..+..+|..++..|+|++|+..|++++.++|.++.++.++|.+|..+|++++|+..++++++++|++..++..++
T Consensus        36 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~  115 (477)
T 1wao_1           36 NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQ  115 (477)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHH
T ss_pred             CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            56779999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HH--HHHhCCHHHHHHHHH-----------HHHhhchhcc
Q psy11461         90 QA--LHEINHYDEAVKHLQ-----------RAYDLSREQN  116 (253)
Q Consensus        90 ~~--~~~~~~~~~A~~~~~-----------~al~l~p~~~  116 (253)
                      .+  +...|++++|++.+.           +++.+.|+..
T Consensus       116 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~~  155 (477)
T 1wao_1          116 ECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEYS  155 (477)
T ss_dssp             HHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTCC
T ss_pred             HHHHHHHHHHHHHHhccccccchhHhhhhhhhcccccccc
Confidence            99  888999999999999           8888888753

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.30  E-value=5.5e-11  Score=85.75  Aligned_cols=80  Identities=18%  Similarity=0.036  Sum_probs=70.2

Q ss_pred             HHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhcccchHHHHHHHHHH
Q psy11461         50 YFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIACQLRI  129 (253)
Q Consensus        50 ~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~  129 (253)
                      .++.+|.++...|++++|+..+++++.++|++..+|+.+|.++..+|++++|+..|+++++++|++...+..........
T Consensus        19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~   98 (121)
T 1hxi_A           19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE   98 (121)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence            47889999999999999999999999999999999999999999999999999999999999999865444433333333

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.29  E-value=1.2e-10  Score=100.25  Aligned_cols=104  Identities=21%  Similarity=0.257  Sum_probs=97.1

Q ss_pred             cccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHhhCHHHHHHHHHHHHhh------CCC
Q psy11461         11 NLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIP----SYFTNRALCYLKLKQYVHCCDDCRKALEL------EPS   80 (253)
Q Consensus        11 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~----~~~~~~a~~~~~~~~~~~A~~~~~~al~l------~p~   80 (253)
                      +..+..+..+|..++..|+|++|+..|.+++..+|.++    .++.++|.+|..+|++++|+..+++++.+      +|.
T Consensus        45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  124 (411)
T 4a1s_A           45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLG  124 (411)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchH
Confidence            56778889999999999999999999999999999987    58999999999999999999999999998      577


Q ss_pred             cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchh
Q psy11461         81 LVKAQFFLGQALHEINHYDEAVKHLQRAYDLSRE  114 (253)
Q Consensus        81 ~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~  114 (253)
                      ...+++.+|.++..+|++++|+..|.+++++.+.
T Consensus       125 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~  158 (411)
T 4a1s_A          125 EAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQ  158 (411)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence            8899999999999999999999999999999554

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=99.29  E-value=2.6e-11  Score=84.32  Aligned_cols=72  Identities=8%  Similarity=0.079  Sum_probs=66.9

Q ss_pred             CCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCC
Q psy11461          9 TNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS   80 (253)
Q Consensus         9 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~   80 (253)
                      .+|.++..++.+|..++..|+|++|+..|++++..+|.++.+|.++|.+|..+|++++|+..+++++.+.|.
T Consensus         2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~   73 (100)
T 3ma5_A            2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE   73 (100)
T ss_dssp             ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence            367889999999999999999999999999999999999999999999999999999999999999998764

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.29  E-value=6.1e-11  Score=97.64  Aligned_cols=107  Identities=19%  Similarity=0.217  Sum_probs=98.3

Q ss_pred             CCCCCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhh
Q psy11461          6 NFTTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIK--------NPVIPSYFTNRALCYLKLKQYVHCCDDCRKALEL   77 (253)
Q Consensus         6 ~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l   77 (253)
                      .-+.+|..+..+..+|..++..|++++|+..|.+++..        .|..+.++.++|.++...|++++|+..+.+++.+
T Consensus        19 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~   98 (311)
T 3nf1_A           19 GGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAI   98 (311)
T ss_dssp             SCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            34467889999999999999999999999999999995        6677889999999999999999999999999988


Q ss_pred             --------CCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhc
Q psy11461         78 --------EPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLS  112 (253)
Q Consensus        78 --------~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~  112 (253)
                              +|....+++.+|.++...|++++|+..|.+++++.
T Consensus        99 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~  141 (311)
T 3nf1_A           99 REKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIR  141 (311)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHH
Confidence                    46678899999999999999999999999999986

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.28  E-value=4.4e-11  Score=90.40  Aligned_cols=86  Identities=10%  Similarity=0.039  Sum_probs=74.8

Q ss_pred             CCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhcccchHHHH
Q psy11461         44 NPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNYGDDI  123 (253)
Q Consensus        44 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~  123 (253)
                      ++.++..+..+|.+++..|+|++|+..|++++.++|++..+++.+|.++..+|++++|+..|+++++++|++...+....
T Consensus         7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg   86 (164)
T 3sz7_A            7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLG   86 (164)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            34567889999999999999999999999999999999999999999999999999999999999999999855444433


Q ss_pred             HHHHHH
Q psy11461        124 ACQLRI  129 (253)
Q Consensus       124 ~~~~~~  129 (253)
                      ......
T Consensus        87 ~~~~~~   92 (164)
T 3sz7_A           87 LARFDM   92 (164)
T ss_dssp             HHHHHT
T ss_pred             HHHHHc
Confidence            333333

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.28  E-value=1.9e-11  Score=92.29  Aligned_cols=89  Identities=9%  Similarity=0.029  Sum_probs=80.1

Q ss_pred             CcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcH-HHHHHH
Q psy11461         10 NNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLV-KAQFFL   88 (253)
Q Consensus        10 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~-~a~~~l   88 (253)
                      .|..+..+.++|.+++..|+|++|+..+.+++.++|.++.+|+++|.+|..+|++++|+.++.+++.++|++. .+...+
T Consensus        59 ~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l  138 (162)
T 3rkv_A           59 DRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREM  138 (162)
T ss_dssp             HHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence            4567789999999999999999999999999999999999999999999999999999999999999999998 567677


Q ss_pred             HHHHHHhCCH
Q psy11461         89 GQALHEINHY   98 (253)
Q Consensus        89 g~~~~~~~~~   98 (253)
                      +.+....+.+
T Consensus       139 ~~~~~~~~~~  148 (162)
T 3rkv_A          139 KIVTERRAEK  148 (162)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            7666555433

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.27  E-value=3.2e-11  Score=94.03  Aligned_cols=97  Identities=9%  Similarity=0.061  Sum_probs=84.6

Q ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q psy11461         14 DKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALH   93 (253)
Q Consensus        14 a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~   93 (253)
                      ...+..+|.+++..|+|++|+.+|.+++..+|.++.+++++|.+|..+|++++|+..+++++.++|++..++..++.++.
T Consensus        88 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  167 (198)
T 2fbn_A           88 ISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVN  167 (198)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHH
Confidence            37899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhCCHHHHH-HHHHHHHh
Q psy11461         94 EINHYDEAV-KHLQRAYD  110 (253)
Q Consensus        94 ~~~~~~~A~-~~~~~al~  110 (253)
                      .+++..++. ..|.+.+.
T Consensus       168 ~~~~~~~~~~~~~~~~f~  185 (198)
T 2fbn_A          168 KLKEARKKDKLTFGGMFD  185 (198)
T ss_dssp             HHHHHHC-----------
T ss_pred             HHHHHHHHHHHHHHHHhc
Confidence            999888877 45555544

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.27  E-value=2.3e-11  Score=91.51  Aligned_cols=75  Identities=19%  Similarity=0.273  Sum_probs=69.5

Q ss_pred             CCcccHHHHHHHHHHHHhccCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh-----------CHHHH
Q psy11461          9 TNNLSDKELKDEGNRYFGLRQY----------EEAINCYTRAIIKNPVIPSYFTNRALCYLKLK-----------QYVHC   67 (253)
Q Consensus         9 ~~~~~a~~~~~~g~~~~~~g~~----------~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~-----------~~~~A   67 (253)
                      .+|.++..|+++|.++...+++          ++|+..|++||.++|+++.+|+++|.+|..+|           ++++|
T Consensus        31 l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA  110 (158)
T 1zu2_A           31 SNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLA  110 (158)
T ss_dssp             HCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_pred             HCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHH
Confidence            4688999999999999998875          59999999999999999999999999999885           89999


Q ss_pred             HHHHHHHHhhCCCcHH
Q psy11461         68 CDDCRKALELEPSLVK   83 (253)
Q Consensus        68 ~~~~~~al~l~p~~~~   83 (253)
                      +.+|++|++++|++..
T Consensus       111 ~~~~~kAl~l~P~~~~  126 (158)
T 1zu2_A          111 TQFFQQAVDEQPDNTH  126 (158)
T ss_dssp             HHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHHhCCCCHH
Confidence            9999999999999853

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.27  E-value=5.1e-11  Score=98.13  Aligned_cols=103  Identities=23%  Similarity=0.300  Sum_probs=94.7

Q ss_pred             CCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhC--
Q psy11461          9 TNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIK--------NPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELE--   78 (253)
Q Consensus         9 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~--   78 (253)
                      ..+..+..+..+|..++..|++++|+.+|.+++..        .|..+.++.++|.++..+|++++|+..+.+++.+.  
T Consensus        64 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~  143 (311)
T 3nf1_A           64 DHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK  143 (311)
T ss_dssp             SSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHH
Confidence            45677889999999999999999999999999987        35667899999999999999999999999999884  


Q ss_pred             ------CCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Q psy11461         79 ------PSLVKAQFFLGQALHEINHYDEAVKHLQRAYDL  111 (253)
Q Consensus        79 ------p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l  111 (253)
                            |....++..+|.++...|++++|+..|++++.+
T Consensus       144 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~  182 (311)
T 3nf1_A          144 VLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEI  182 (311)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             hcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence                  667788999999999999999999999999998

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.26  E-value=5.5e-10  Score=95.32  Aligned_cols=107  Identities=25%  Similarity=0.307  Sum_probs=97.8

Q ss_pred             CcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHhhCHHHHHHHHHHHHhh------CC
Q psy11461         10 NNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIP----SYFTNRALCYLKLKQYVHCCDDCRKALEL------EP   79 (253)
Q Consensus        10 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~----~~~~~~a~~~~~~~~~~~A~~~~~~al~l------~p   79 (253)
                      ....+..+...|..++..|+|++|+.+|++++...|.++    .++..+|.++...|++++|+..+++++.+      .|
T Consensus         5 ~~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~   84 (406)
T 3sf4_A            5 MEASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL   84 (406)
T ss_dssp             CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence            355688899999999999999999999999999999984    68999999999999999999999999987      45


Q ss_pred             CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhcc
Q psy11461         80 SLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQN  116 (253)
Q Consensus        80 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~  116 (253)
                      ....+++.+|.++..+|++++|+..+.+++.+.|...
T Consensus        85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  121 (406)
T 3sf4_A           85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELN  121 (406)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcc
Confidence            5678999999999999999999999999999988753

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.25  E-value=5.1e-11  Score=102.24  Aligned_cols=106  Identities=16%  Similarity=0.193  Sum_probs=90.4

Q ss_pred             CCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCC-------CHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCc
Q psy11461          9 TNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPV-------IPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSL   81 (253)
Q Consensus         9 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~-------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~   81 (253)
                      ..+..+..+..+|..++..|+++.|+.+|.+|+.+.+.       .+.++.++|.+|..+|++++|+..+.+++.+.+..
T Consensus       138 ~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~  217 (383)
T 3ulq_A          138 DRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAE  217 (383)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHc
Confidence            44557889999999999999999999999999988443       34589999999999999999999999999885533


Q ss_pred             ------HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchh
Q psy11461         82 ------VKAQFFLGQALHEINHYDEAVKHLQRAYDLSRE  114 (253)
Q Consensus        82 ------~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~  114 (253)
                            ..+++++|.++..+|++++|+.+|++++++.+.
T Consensus       218 ~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  256 (383)
T 3ulq_A          218 KQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEE  256 (383)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Confidence                  258899999999999999999999999996543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.24  E-value=9.4e-11  Score=106.33  Aligned_cols=113  Identities=9%  Similarity=0.020  Sum_probs=106.7

Q ss_pred             CCcccHHHHHHHHHHHHhccC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh--CHHHHHHHHHHHHh
Q psy11461          9 TNNLSDKELKDEGNRYFGLRQ----------YEEAINCYTRAIIKNPVIPSYFTNRALCYLKLK--QYVHCCDDCRKALE   76 (253)
Q Consensus         9 ~~~~~a~~~~~~g~~~~~~g~----------~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~--~~~~A~~~~~~al~   76 (253)
                      .+|+...+|..+|.++...|+          +++++.++.+++..+|.+..+|.+|+.++.+++  +|++++.++.++++
T Consensus        58 ~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~  137 (567)
T 1dce_A           58 ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLE  137 (567)
T ss_dssp             HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHH
T ss_pred             HCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHh
Confidence            468889999999999999998          999999999999999999999999999999999  77999999999999


Q ss_pred             hCCCcHHHHHHHHHHHHHhC-CHHHHHHHHHHHHhhchhcccchHH
Q psy11461         77 LEPSLVKAQFFLGQALHEIN-HYDEAVKHLQRAYDLSREQNLNYGD  121 (253)
Q Consensus        77 l~p~~~~a~~~lg~~~~~~~-~~~~A~~~~~~al~l~p~~~~~~~~  121 (253)
                      ++|.|..||.+++.++..+| .++++++++.++++.+|.+..++..
T Consensus       138 ~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~  183 (567)
T 1dce_A          138 ADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHY  183 (567)
T ss_dssp             HCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHH
T ss_pred             hccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHH
Confidence            99999999999999999999 9999999999999999998655443

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.24  E-value=5e-10  Score=92.60  Aligned_cols=104  Identities=26%  Similarity=0.332  Sum_probs=95.4

Q ss_pred             cHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHhhCHHHHHHHHHHHHhh------CCCcH
Q psy11461         13 SDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVI----PSYFTNRALCYLKLKQYVHCCDDCRKALEL------EPSLV   82 (253)
Q Consensus        13 ~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~----~~~~~~~a~~~~~~~~~~~A~~~~~~al~l------~p~~~   82 (253)
                      ....++..|..++..|++++|+..|.+++..+|.+    +.++..+|.++...|++++|+..+.+++.+      .|...
T Consensus         4 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~   83 (338)
T 3ro2_A            4 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA   83 (338)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHH
Confidence            45678899999999999999999999999999998    468899999999999999999999999987      45567


Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhcc
Q psy11461         83 KAQFFLGQALHEINHYDEAVKHLQRAYDLSREQN  116 (253)
Q Consensus        83 ~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~  116 (253)
                      .++..+|.++...|++++|+..+.+++++.+...
T Consensus        84 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~  117 (338)
T 3ro2_A           84 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELN  117 (338)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhc
Confidence            8999999999999999999999999999988753

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.24  E-value=3.9e-11  Score=106.08  Aligned_cols=91  Identities=18%  Similarity=0.270  Sum_probs=83.8

Q ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q psy11461         14 DKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALH   93 (253)
Q Consensus        14 a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~   93 (253)
                      +..+.++|.++++.|+|++|+.+|.+++.++|.++.+++++|.+|..+|++++|+.+|++|++++|++..++..++.++.
T Consensus       317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~  396 (457)
T 1kt0_A          317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQK  396 (457)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            68899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhCCHHHHHHH
Q psy11461         94 EINHYDEAVKH  104 (253)
Q Consensus        94 ~~~~~~~A~~~  104 (253)
                      .++++++|.+.
T Consensus       397 ~~~~~~~a~~~  407 (457)
T 1kt0_A          397 KAKEHNERDRR  407 (457)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999887653

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.24  E-value=1.1e-11  Score=105.41  Aligned_cols=102  Identities=19%  Similarity=0.162  Sum_probs=60.7

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH-H
Q psy11461         15 KELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQAL-H   93 (253)
Q Consensus        15 ~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~-~   93 (253)
                      ..+.++|.+++..|+|++|+.+|.+++.++|.++.+++++|.+|..+|++++|+.+|++++.++|++..++..++.+. .
T Consensus       231 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~  310 (338)
T 2if4_A          231 PCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQ  310 (338)
T ss_dssp             HHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence            378999999999999999999999999999999999999999999999999999999999999999999999999984 4


Q ss_pred             HhCCHHHHHHHHHHHHhhchhcc
Q psy11461         94 EINHYDEAVKHLQRAYDLSREQN  116 (253)
Q Consensus        94 ~~~~~~~A~~~~~~al~l~p~~~  116 (253)
                      ..+..+.+...|.+++...|++.
T Consensus       311 ~~~~~~~a~~~~~~~l~~~p~~~  333 (338)
T 2if4_A          311 EKALYQKQKEMYKGIFKGKDEGG  333 (338)
T ss_dssp             -----------------------
T ss_pred             HHHHHHHHHHHHHHhhCCCCCCC
Confidence            55678889999999999999863

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.24  E-value=1.7e-10  Score=96.60  Aligned_cols=114  Identities=9%  Similarity=-0.017  Sum_probs=104.8

Q ss_pred             CCcccHHHHHHHHHHHHhcc--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH----HHh---hCHHHHHHHHHHHHhhCC
Q psy11461          9 TNNLSDKELKDEGNRYFGLR--QYEEAINCYTRAIIKNPVIPSYFTNRALCY----LKL---KQYVHCCDDCRKALELEP   79 (253)
Q Consensus         9 ~~~~~a~~~~~~g~~~~~~g--~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~----~~~---~~~~~A~~~~~~al~l~p   79 (253)
                      -+|....+|..+|.++...|  ++++++.++..++..+|.+..+|..|+.++    ...   +++.+++..+.+++.++|
T Consensus        62 ~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~p  141 (306)
T 3dra_A           62 ELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDP  141 (306)
T ss_dssp             HCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCT
T ss_pred             HCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCC
Confidence            46888999999999999999  999999999999999999999999999999    667   789999999999999999


Q ss_pred             CcHHHHHHHHHHHHHhCCHH--HHHHHHHHHHhhchhcccchHHH
Q psy11461         80 SLVKAQFFLGQALHEINHYD--EAVKHLQRAYDLSREQNLNYGDD  122 (253)
Q Consensus        80 ~~~~a~~~lg~~~~~~~~~~--~A~~~~~~al~l~p~~~~~~~~~  122 (253)
                      .|..+|++++.++..+|.++  ++++++.++++.+|.+..++...
T Consensus       142 kny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R  186 (306)
T 3dra_A          142 KNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHR  186 (306)
T ss_dssp             TCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            99999999999999999998  99999999999999986655433

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.24  E-value=9.9e-11  Score=86.64  Aligned_cols=106  Identities=15%  Similarity=0.294  Sum_probs=93.7

Q ss_pred             CcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCc--
Q psy11461         10 NNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIP------SYFTNRALCYLKLKQYVHCCDDCRKALELEPSL--   81 (253)
Q Consensus        10 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~------~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~--   81 (253)
                      .+..+..+..+|..++..|++++|+.+|.+++...+...      .++.++|.++..+|++++|+..+.+++.+.+..  
T Consensus         5 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~   84 (164)
T 3ro3_A            5 RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD   84 (164)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC
Confidence            345678899999999999999999999999998865422      589999999999999999999999999886543  


Q ss_pred             ----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461         82 ----VKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQ  115 (253)
Q Consensus        82 ----~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~  115 (253)
                          ..+++.+|.++...|++++|+..+.+++.+.+..
T Consensus        85 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~  122 (164)
T 3ro3_A           85 RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL  122 (164)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             cHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHc
Confidence                6689999999999999999999999999987654

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.23  E-value=2.2e-10  Score=88.73  Aligned_cols=105  Identities=8%  Similarity=0.036  Sum_probs=93.5

Q ss_pred             cccHHHHHHHHHHHHhccCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhh---CC--
Q psy11461         11 NLSDKELKDEGNRYFGLRQYEEAINCYTRAIIK------NPVIPSYFTNRALCYLKLKQYVHCCDDCRKALEL---EP--   79 (253)
Q Consensus        11 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l---~p--   79 (253)
                      ...+..+..+|..++..|++++|+.+|.+++..      .|..+.++.++|.++..+|++++|+..+.+++.+   .+  
T Consensus        23 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~  102 (203)
T 3gw4_A           23 ATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPED  102 (203)
T ss_dssp             TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC
T ss_pred             HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCcc
Confidence            367889999999999999999999999999984      4456778999999999999999999999999998   33  


Q ss_pred             --CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461         80 --SLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQ  115 (253)
Q Consensus        80 --~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~  115 (253)
                        ....+++.+|.++..+|++++|+..+.+++.+.+..
T Consensus       103 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~  140 (203)
T 3gw4_A          103 PLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQA  140 (203)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc
Confidence              335679999999999999999999999999987654

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.23  E-value=4e-10  Score=91.89  Aligned_cols=99  Identities=19%  Similarity=0.214  Sum_probs=87.7

Q ss_pred             CcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hhCHHHHHHHHHHHHhhCCCcHHHH
Q psy11461         10 NNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLK----LKQYVHCCDDCRKALELEPSLVKAQ   85 (253)
Q Consensus        10 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~l~p~~~~a~   85 (253)
                      +|.++.+++.+|..++..|++++|+.+|.+++.  |.++.++.++|.+|..    .+++++|+.++++++.++  ++.++
T Consensus         2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~   77 (273)
T 1ouv_A            2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGC   77 (273)
T ss_dssp             ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHH
T ss_pred             CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHH
Confidence            356788899999999999999999999999988  7788999999999999    999999999999999875  78999


Q ss_pred             HHHHHHHHH----hCCHHHHHHHHHHHHhhc
Q psy11461         86 FFLGQALHE----INHYDEAVKHLQRAYDLS  112 (253)
Q Consensus        86 ~~lg~~~~~----~~~~~~A~~~~~~al~l~  112 (253)
                      +.+|.++..    .+++++|+..|+++++.+
T Consensus        78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~  108 (273)
T 1ouv_A           78 HLLGNLYYSGQGVSQNTNKALQYYSKACDLK  108 (273)
T ss_dssp             HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHhCCCCcccCHHHHHHHHHHHHHcC
Confidence            999999999    999999999999999874

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.23  E-value=1.3e-10  Score=87.58  Aligned_cols=72  Identities=19%  Similarity=0.300  Sum_probs=65.8

Q ss_pred             HHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCC-------cHH-----HHHHHHHHHHHhCCHHHHHHHHHHHHhh----
Q psy11461         48 PSYFTNRALCYLKLKQYVHCCDDCRKALELEPS-------LVK-----AQFFLGQALHEINHYDEAVKHLQRAYDL----  111 (253)
Q Consensus        48 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~-------~~~-----a~~~lg~~~~~~~~~~~A~~~~~~al~l----  111 (253)
                      +..+.++|.++++.|+|++|+..|++|+.++|+       +..     +|+++|.++..+|+|++|+.+|.+|+++    
T Consensus        11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~   90 (159)
T 2hr2_A           11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR   90 (159)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence            457889999999999999999999999999999       554     9999999999999999999999999999    


Q ss_pred             ---chhcccch
Q psy11461        112 ---SREQNLNY  119 (253)
Q Consensus       112 ---~p~~~~~~  119 (253)
                         +|++...+
T Consensus        91 ~e~~pd~~~A~  101 (159)
T 2hr2_A           91 GELNQDEGKLW  101 (159)
T ss_dssp             CCTTSTHHHHH
T ss_pred             ccCCCchHHHH
Confidence               99875444

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.22  E-value=2.8e-10  Score=80.54  Aligned_cols=87  Identities=28%  Similarity=0.404  Sum_probs=82.3

Q ss_pred             CcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q psy11461         10 NNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLG   89 (253)
Q Consensus        10 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg   89 (253)
                      .|..+..+..+|..++..|++++|+..|.+++..+|.++.++.++|.++...|++++|+..+++++.++|.+..++..+|
T Consensus        39 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~  118 (125)
T 1na0_A           39 DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLG  118 (125)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence            35667889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhC
Q psy11461         90 QALHEIN   96 (253)
Q Consensus        90 ~~~~~~~   96 (253)
                      .++...|
T Consensus       119 ~~~~~~g  125 (125)
T 1na0_A          119 NAKQKQG  125 (125)
T ss_dssp             HHHHHHC
T ss_pred             HHHHhcc
Confidence            9987765

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.21  E-value=1.4e-10  Score=99.50  Aligned_cols=106  Identities=22%  Similarity=0.243  Sum_probs=96.1

Q ss_pred             CcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhhCHHHHHHHHHHHHh-----hC
Q psy11461         10 NNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVI------PSYFTNRALCYLKLKQYVHCCDDCRKALE-----LE   78 (253)
Q Consensus        10 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~al~-----l~   78 (253)
                      .+..+..+..+|..+...|+|++|+.+|.+++...+..      +.++.++|.+|..+|++++|+..+++++.     .+
T Consensus       180 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~  259 (383)
T 3ulq_A          180 NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNI  259 (383)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc
Confidence            45567889999999999999999999999999885543      25899999999999999999999999999     46


Q ss_pred             -CCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461         79 -PSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQ  115 (253)
Q Consensus        79 -p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~  115 (253)
                       |....+++.+|.++..+|++++|+..+++++++.+..
T Consensus       260 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~  297 (383)
T 3ulq_A          260 LPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKA  297 (383)
T ss_dssp             GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc
Confidence             8889999999999999999999999999999997764

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.20  E-value=1.4e-10  Score=96.88  Aligned_cols=104  Identities=13%  Similarity=0.089  Sum_probs=78.0

Q ss_pred             ccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCc----
Q psy11461         12 LSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPV------IPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSL----   81 (253)
Q Consensus        12 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~----   81 (253)
                      ..+..+.++|..+...|+|++|+.+|.+++.+.+.      ...++.++|.+|.. |++++|+..|++|+.+.|..    
T Consensus        74 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~  152 (307)
T 2ifu_A           74 HAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLR  152 (307)
T ss_dssp             HHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChh
Confidence            45777788888888888888888888888777432      36777788888877 88888888888888776543    


Q ss_pred             --HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhcc
Q psy11461         82 --VKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQN  116 (253)
Q Consensus        82 --~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~  116 (253)
                        ..++.++|.++..+|++++|+.+|++++++.|.+.
T Consensus       153 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~  189 (307)
T 2ifu_A          153 QAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEME  189 (307)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC
Confidence              46677788888888888888888888888777653

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=99.20  E-value=9e-10  Score=92.99  Aligned_cols=116  Identities=9%  Similarity=0.020  Sum_probs=106.0

Q ss_pred             CCCCcccHHHHHHHHHHHHhccC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhC--HHHHHHHHHHH
Q psy11461          7 FTTNNLSDKELKDEGNRYFGLRQ----------YEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQ--YVHCCDDCRKA   74 (253)
Q Consensus         7 ~~~~~~~a~~~~~~g~~~~~~g~----------~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~--~~~A~~~~~~a   74 (253)
                      ...+|+...+|...+.++...|.          +.+++.++..++..+|.+..+|..|+.++..+++  +++++..+.++
T Consensus        57 L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~  136 (331)
T 3dss_A           57 LGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARF  136 (331)
T ss_dssp             HTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH
T ss_pred             HHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHH
Confidence            44678999999999999988776          7899999999999999999999999999999994  99999999999


Q ss_pred             HhhCCCcHHHHHHHHHHHHHhCC-HHHHHHHHHHHHhhchhcccchHHH
Q psy11461         75 LELEPSLVKAQFFLGQALHEINH-YDEAVKHLQRAYDLSREQNLNYGDD  122 (253)
Q Consensus        75 l~l~p~~~~a~~~lg~~~~~~~~-~~~A~~~~~~al~l~p~~~~~~~~~  122 (253)
                      +.++|.|..+|.+++.++...|. ++++++++.++++.+|.+..++...
T Consensus       137 l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R  185 (331)
T 3dss_A          137 LEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYR  185 (331)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHH
T ss_pred             HHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence            99999999999999999999998 6999999999999999986655433

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.19  E-value=3.7e-10  Score=79.15  Aligned_cols=83  Identities=11%  Similarity=0.063  Sum_probs=78.8

Q ss_pred             CcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q psy11461         10 NNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLG   89 (253)
Q Consensus        10 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg   89 (253)
                      .|..+..+..+|..++..|++++|+..|.+++..+|.++.++.++|.++..+|++++|+..+.+++.++|++..++..++
T Consensus        34 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~  113 (118)
T 1elw_A           34 DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQ  113 (118)
T ss_dssp             CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999999999888


Q ss_pred             HHH
Q psy11461         90 QAL   92 (253)
Q Consensus        90 ~~~   92 (253)
                      .+.
T Consensus       114 ~~~  116 (118)
T 1elw_A          114 NME  116 (118)
T ss_dssp             HHH
T ss_pred             Hhh
Confidence            764

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.19  E-value=1.4e-10  Score=101.64  Aligned_cols=106  Identities=17%  Similarity=0.160  Sum_probs=78.7

Q ss_pred             CcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh-------------------hCHHHHHHH
Q psy11461         10 NNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKL-------------------KQYVHCCDD   70 (253)
Q Consensus        10 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~-------------------~~~~~A~~~   70 (253)
                      .|..+..+..+|..+...|++++|+..|.+++..+|+++.++.++|.+|...                   +.++.|+..
T Consensus       243 ~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~  322 (472)
T 4g1t_A          243 APGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAH  322 (472)
T ss_dssp             CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHH
Confidence            4556667777777777777777777777777777777777777777776543                   335677777


Q ss_pred             HHHHHhhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461         71 CRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQ  115 (253)
Q Consensus        71 ~~~al~l~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~  115 (253)
                      +.+++.++|.+..+++.+|.++...|++++|+.+|++++++.|++
T Consensus       323 ~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~  367 (472)
T 4g1t_A          323 LKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTP  367 (472)
T ss_dssp             HHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCH
T ss_pred             HHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCC
Confidence            777777777777777777777778888888888888887776654

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.18  E-value=3e-09  Score=87.85  Aligned_cols=104  Identities=11%  Similarity=0.046  Sum_probs=88.4

Q ss_pred             CCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhcccchHHHHH
Q psy11461         45 PVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIA  124 (253)
Q Consensus        45 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~  124 (253)
                      |.++..+.++|.++...|+|++|+..|.+++.++|++..+++++|.++..+|++++|+..++++++++|++...+.....
T Consensus         1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~   80 (281)
T 2c2l_A            1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ   80 (281)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            56788999999999999999999999999999999999999999999999999999999999999999998766665555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q psy11461        125 CQLRIAKKKRWAETEEKRIAQEIE  148 (253)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~  148 (253)
                      ......+...+....++.+...|+
T Consensus        81 ~~~~~g~~~~A~~~~~~al~l~p~  104 (281)
T 2c2l_A           81 CQLEMESYDEAIANLQRAYSLAKE  104 (281)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCcc
Confidence            555555555555555555555554

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.18  E-value=4.2e-10  Score=93.22  Aligned_cols=101  Identities=17%  Similarity=0.039  Sum_probs=57.5

Q ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHH----HhCCC--CHHHHHHHHHHHHHhhCHHHHHHHHHHHH---hhCCCc---
Q psy11461         14 DKELKDEGNRYFGLRQYEEAINCYTRAI----IKNPV--IPSYFTNRALCYLKLKQYVHCCDDCRKAL---ELEPSL---   81 (253)
Q Consensus        14 a~~~~~~g~~~~~~g~~~~A~~~y~~ai----~~~p~--~~~~~~~~a~~~~~~~~~~~A~~~~~~al---~l~p~~---   81 (253)
                      ...++.+|..+...|++++|+.+|.+++    .....  ...++.++|.+|..+|++++|+..+.+++   ...|++   
T Consensus       115 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~  194 (293)
T 2qfc_A          115 LQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEF  194 (293)
T ss_dssp             HHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccc
Confidence            4445556666666666666666666665    22111  23456666666666666666666666666   223332   


Q ss_pred             -HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchh
Q psy11461         82 -VKAQFFLGQALHEINHYDEAVKHLQRAYDLSRE  114 (253)
Q Consensus        82 -~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~  114 (253)
                       ..+++++|.++..+|++++|+.++++++++.+.
T Consensus       195 ~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~  228 (293)
T 2qfc_A          195 DVKVRYNHAKALYLDSRYEESLYQVNKAIEISCR  228 (293)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence             145666666666666666666666666665543

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.18  E-value=1.4e-10  Score=99.73  Aligned_cols=96  Identities=19%  Similarity=0.195  Sum_probs=90.3

Q ss_pred             CCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHH
Q psy11461          9 TNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFL   88 (253)
Q Consensus         9 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l   88 (253)
                      ..+..+..+.++|.++++.|+|++|+.+|++++.++|.++.+++++|.+|..+|++++|+.++++|++++|++..++..+
T Consensus       268 ~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l  347 (370)
T 1ihg_A          268 LQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAEL  347 (370)
T ss_dssp             GHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            34567889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCHHHHHHH
Q psy11461         89 GQALHEINHYDEAVKH  104 (253)
Q Consensus        89 g~~~~~~~~~~~A~~~  104 (253)
                      +.++..+++++++.+.
T Consensus       348 ~~~~~~~~~~~~a~k~  363 (370)
T 1ihg_A          348 LKVKQKIKAQKDKEKA  363 (370)
T ss_dssp             HHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999988887653

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.18  E-value=8.2e-11  Score=97.52  Aligned_cols=103  Identities=13%  Similarity=0.059  Sum_probs=88.4

Q ss_pred             cHHHHHHHHHHHHhccCHHHHHHHHHHHHHh-------CCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCc----
Q psy11461         13 SDKELKDEGNRYFGLRQYEEAINCYTRAIIK-------NPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSL----   81 (253)
Q Consensus        13 ~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~-------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~----   81 (253)
                      .+..+..+|.+++..|+|++|+.+|.+++..       .+..+.++.++|.+|..+|++++|+..+.+++.+.+..    
T Consensus       154 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~  233 (293)
T 3u3w_A          154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMA  233 (293)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCT
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHH
Confidence            3667999999999999999999999999953       12234589999999999999999999999999886543    


Q ss_pred             --HHHHHHHHHHHHHhC-CHHHHHHHHHHHHhhchhc
Q psy11461         82 --VKAQFFLGQALHEIN-HYDEAVKHLQRAYDLSREQ  115 (253)
Q Consensus        82 --~~a~~~lg~~~~~~~-~~~~A~~~~~~al~l~p~~  115 (253)
                        ..+++.+|.++..+| .+++|+.+|++|+.+....
T Consensus       234 ~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~~~  270 (293)
T 3u3w_A          234 LIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDIL  270 (293)
T ss_dssp             THHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHh
Confidence              789999999999999 5799999999999887643

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.18  E-value=5.2e-10  Score=76.90  Aligned_cols=85  Identities=18%  Similarity=0.091  Sum_probs=73.0

Q ss_pred             CCCCHHHHHHHHHHHHHhhC---HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhcccchH
Q psy11461         44 NPVIPSYFTNRALCYLKLKQ---YVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNYG  120 (253)
Q Consensus        44 ~p~~~~~~~~~a~~~~~~~~---~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~  120 (253)
                      +|.++.++..+|.+++..++   .++|...+++++.++|+++.+++.+|..++..|+|++|+..|+++++.+|.+  ...
T Consensus         2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~--~~~   79 (93)
T 3bee_A            2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN--LDR   79 (93)
T ss_dssp             CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT--CCH
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--ccH
Confidence            68899999999999987666   7999999999999999999999999999999999999999999999999983  334


Q ss_pred             HHHHHHHHHH
Q psy11461        121 DDIACQLRIA  130 (253)
Q Consensus       121 ~~~~~~~~~~  130 (253)
                      ..+...+..+
T Consensus        80 ~~i~~~I~~A   89 (93)
T 3bee_A           80 VTIIESINKA   89 (93)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            4454444443

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.17  E-value=3e-10  Score=80.54  Aligned_cols=85  Identities=12%  Similarity=-0.021  Sum_probs=74.0

Q ss_pred             CCCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCc--HHHH
Q psy11461          8 TTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSL--VKAQ   85 (253)
Q Consensus         8 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~--~~a~   85 (253)
                      ...|..+..++.+|..++..|++++|+..|.+++..+|.++.++.++|.+|..+|++++|+..+++++.++|.+  ..+.
T Consensus        13 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~   92 (115)
T 2kat_A           13 AQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSRGDQQVV   92 (115)
T ss_dssp             TTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred             HhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccccHHHH
Confidence            34677899999999999999999999999999999999999999999999999999999999999999998753  3444


Q ss_pred             HHHHHHH
Q psy11461         86 FFLGQAL   92 (253)
Q Consensus        86 ~~lg~~~   92 (253)
                      ..+...+
T Consensus        93 ~~l~~~l   99 (115)
T 2kat_A           93 KELQVFL   99 (115)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            4443333

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.17  E-value=1e-10  Score=97.76  Aligned_cols=106  Identities=14%  Similarity=0.117  Sum_probs=93.7

Q ss_pred             CCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCC--
Q psy11461          9 TNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPV------IPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS--   80 (253)
Q Consensus         9 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~--   80 (253)
                      ........+...|+.+...|+|++|+.+|.+++.+.+.      ...++.++|.+|..+|++++|+.++++++.+.+.  
T Consensus        31 ~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g  110 (307)
T 2ifu_A           31 DYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENG  110 (307)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTT
T ss_pred             CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcC
Confidence            34567888999999999999999999999999998653      4999999999999999999999999999988542  


Q ss_pred             ----cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461         81 ----LVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQ  115 (253)
Q Consensus        81 ----~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~  115 (253)
                          ...++.++|.++.. |++++|+.+|++|+.+.|..
T Consensus       111 ~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~  148 (307)
T 2ifu_A          111 TPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENE  148 (307)
T ss_dssp             CHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhC
Confidence                24678999999988 99999999999999998864

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.16  E-value=3.5e-10  Score=76.11  Aligned_cols=71  Identities=30%  Similarity=0.407  Sum_probs=67.7

Q ss_pred             CCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhcc
Q psy11461         46 VIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQN  116 (253)
Q Consensus        46 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~  116 (253)
                      .++.++.++|.++...|++++|+..+++++.++|.+..+++.+|.++...|++++|+..|+++++++|++.
T Consensus         7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~   77 (91)
T 1na3_A            7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA   77 (91)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCH
Confidence            45778999999999999999999999999999999999999999999999999999999999999999874

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.15  E-value=4.2e-09  Score=87.14  Aligned_cols=104  Identities=14%  Similarity=0.112  Sum_probs=92.2

Q ss_pred             CcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCc--
Q psy11461         10 NNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPV------IPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSL--   81 (253)
Q Consensus        10 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~--   81 (253)
                      ++.....+...+..++..|+|++|+..|.+++...+.      ....+..+|.++...|++++|+..+.+++.+.+..  
T Consensus        71 ~~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~  150 (293)
T 2qfc_A           71 DIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGID  150 (293)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSC
T ss_pred             chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCc
Confidence            3567888999999999999999999999999998764      47777889999999999999999999999876543  


Q ss_pred             ----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhch
Q psy11461         82 ----VKAQFFLGQALHEINHYDEAVKHLQRAYDLSR  113 (253)
Q Consensus        82 ----~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p  113 (253)
                          ..+++.+|.++..+|++++|+.+|.+++++..
T Consensus       151 ~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~  186 (293)
T 2qfc_A          151 VYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLE  186 (293)
T ss_dssp             TTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence                56899999999999999999999999996543

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.15  E-value=3.3e-10  Score=83.78  Aligned_cols=102  Identities=22%  Similarity=0.322  Sum_probs=90.0

Q ss_pred             cHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCC------
Q psy11461         13 SDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVI------PSYFTNRALCYLKLKQYVHCCDDCRKALELEPS------   80 (253)
Q Consensus        13 ~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~------   80 (253)
                      .+..+..+|..++..|++++|+..|.+++...+..      +.++.++|.++..+|++++|+..+.+++.+.+.      
T Consensus        48 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~  127 (164)
T 3ro3_A           48 ERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIG  127 (164)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHh
Confidence            45688999999999999999999999999886543      568999999999999999999999999987432      


Q ss_pred             cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchh
Q psy11461         81 LVKAQFFLGQALHEINHYDEAVKHLQRAYDLSRE  114 (253)
Q Consensus        81 ~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~  114 (253)
                      ...++..+|.++...|++++|+..+.+++++...
T Consensus       128 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  161 (164)
T 3ro3_A          128 EGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE  161 (164)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence            3567899999999999999999999999988654

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.15  E-value=2.8e-10  Score=97.16  Aligned_cols=106  Identities=15%  Similarity=0.299  Sum_probs=95.8

Q ss_pred             CcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCc--
Q psy11461         10 NNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIP------SYFTNRALCYLKLKQYVHCCDDCRKALELEPSL--   81 (253)
Q Consensus        10 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~------~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~--   81 (253)
                      .+..+..+..+|..++..|++++|+.+|.+++...|...      .++.++|.++..+|++++|+..+.+++.+.|..  
T Consensus       183 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  262 (406)
T 3sf4_A          183 RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD  262 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcC
Confidence            455677899999999999999999999999998866543      389999999999999999999999999987765  


Q ss_pred             ----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461         82 ----VKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQ  115 (253)
Q Consensus        82 ----~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~  115 (253)
                          ..++..+|.++...|++++|+..|.+++.+.+..
T Consensus       263 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~  300 (406)
T 3sf4_A          263 RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL  300 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             chHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhc
Confidence                7789999999999999999999999999998775

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.14  E-value=3.5e-10  Score=78.99  Aligned_cols=69  Identities=12%  Similarity=0.085  Sum_probs=66.5

Q ss_pred             CHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461         47 IPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQ  115 (253)
Q Consensus        47 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~  115 (253)
                      ++..+.++|.++...|+|++|+..+++++.++|+++.+++++|.++..+|++++|+..|+++++++|++
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~   71 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTA   71 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSST
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence            457899999999999999999999999999999999999999999999999999999999999999986

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.14  E-value=5.1e-10  Score=95.90  Aligned_cols=104  Identities=17%  Similarity=0.157  Sum_probs=95.1

Q ss_pred             ccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHhhCHHHHHHHHHHHHh-----hCCC
Q psy11461         12 LSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNP------VIPSYFTNRALCYLKLKQYVHCCDDCRKALE-----LEPS   80 (253)
Q Consensus        12 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p------~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~-----l~p~   80 (253)
                      ..+..+..+|..+...|+|++|+.+|.+++...+      ..+.++.++|.+|..+|++++|+..+.+++.     .+|.
T Consensus       180 ~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~  259 (378)
T 3q15_A          180 RTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL  259 (378)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG
T ss_pred             hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh
Confidence            4678899999999999999999999999998743      1346899999999999999999999999999     7888


Q ss_pred             cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461         81 LVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQ  115 (253)
Q Consensus        81 ~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~  115 (253)
                      ...+++.+|.++..+|++++|+..+++++++.+..
T Consensus       260 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  294 (378)
T 3q15_A          260 LPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITAR  294 (378)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTT
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc
Confidence            89999999999999999999999999999997764

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.14  E-value=1.1e-09  Score=78.61  Aligned_cols=87  Identities=10%  Similarity=0.074  Sum_probs=76.9

Q ss_pred             CCCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHH
Q psy11461          8 TTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVI---PSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKA   84 (253)
Q Consensus         8 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a   84 (253)
                      +.++..+..++.+|.+++..|+|++|+..|.+++..+|++   +.+++++|.++..+|++++|+..+++++..+|++..+
T Consensus        33 p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~  112 (129)
T 2xev_A           33 PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAA  112 (129)
T ss_dssp             SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHH
T ss_pred             CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHH
Confidence            3444455899999999999999999999999999999999   8899999999999999999999999999999999887


Q ss_pred             HHHHHHHHHH
Q psy11461         85 QFFLGQALHE   94 (253)
Q Consensus        85 ~~~lg~~~~~   94 (253)
                      ...+..+...
T Consensus       113 ~~a~~~l~~l  122 (129)
T 2xev_A          113 RVAQERLQSI  122 (129)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            7665554443

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=99.13  E-value=2.5e-09  Score=90.30  Aligned_cols=110  Identities=9%  Similarity=-0.027  Sum_probs=103.2

Q ss_pred             CCcccHHHHHHHHHHHHhcc--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhC-HHHHHHHHHHHHhhCCCcHHHH
Q psy11461          9 TNNLSDKELKDEGNRYFGLR--QYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQ-YVHCCDDCRKALELEPSLVKAQ   85 (253)
Q Consensus         9 ~~~~~a~~~~~~g~~~~~~g--~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~-~~~A~~~~~~al~l~p~~~~a~   85 (253)
                      .+|.+..+|...+..+...|  .+.+++.++.+++..+|.|..+|+.++.+....|. +++++.++.+++..+|.|..||
T Consensus       103 ~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW  182 (331)
T 3dss_A          103 VNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSW  182 (331)
T ss_dssp             HCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHH
T ss_pred             hCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHH
Confidence            47889999999999999988  49999999999999999999999999999999999 6999999999999999999999


Q ss_pred             HHHHHHHHHh--------------CCHHHHHHHHHHHHhhchhcccc
Q psy11461         86 FFLGQALHEI--------------NHYDEAVKHLQRAYDLSREQNLN  118 (253)
Q Consensus        86 ~~lg~~~~~~--------------~~~~~A~~~~~~al~l~p~~~~~  118 (253)
                      .+++.++..+              +.++++++++.+++.++|++..+
T Consensus       183 ~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~Sa  229 (331)
T 3dss_A          183 HYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSA  229 (331)
T ss_dssp             HHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHH
T ss_pred             HHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHH
Confidence            9999999988              56899999999999999998543

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.12  E-value=2.3e-10  Score=98.37  Aligned_cols=105  Identities=16%  Similarity=0.273  Sum_probs=94.9

Q ss_pred             cccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCc---
Q psy11461         11 NLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIP------SYFTNRALCYLKLKQYVHCCDDCRKALELEPSL---   81 (253)
Q Consensus        11 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~------~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~---   81 (253)
                      +..+..+..+|..++..|++++|+.+|.+++...|...      .++.++|.+|..+|++++|+..+++++.+.+..   
T Consensus       220 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  299 (411)
T 4a1s_A          220 GAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGER  299 (411)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCH
Confidence            45567899999999999999999999999999876533      389999999999999999999999999987754   


Q ss_pred             ---HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461         82 ---VKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQ  115 (253)
Q Consensus        82 ---~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~  115 (253)
                         ..++..+|.++..+|++++|+.+|++++.+.+..
T Consensus       300 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  336 (411)
T 4a1s_A          300 EVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQEL  336 (411)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC
Confidence               6789999999999999999999999999998775

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.12  E-value=4.8e-10  Score=101.70  Aligned_cols=111  Identities=9%  Similarity=-0.011  Sum_probs=104.2

Q ss_pred             CCcccHHHHHHHHHHHHhcc--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh-CHHHHHHHHHHHHhhCCCcHHHH
Q psy11461          9 TNNLSDKELKDEGNRYFGLR--QYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLK-QYVHCCDDCRKALELEPSLVKAQ   85 (253)
Q Consensus         9 ~~~~~a~~~~~~g~~~~~~g--~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~-~~~~A~~~~~~al~l~p~~~~a~   85 (253)
                      .+|+...+|..++..+...|  +|++|++++.++++.+|.+..+|..|+.+...+| .+++++.++.++++.+|.|..+|
T Consensus       102 ~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW  181 (567)
T 1dce_A          102 VNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSW  181 (567)
T ss_dssp             HCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHH
T ss_pred             hCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHH
Confidence            46889999999999999999  7799999999999999999999999999999999 99999999999999999999999


Q ss_pred             HHHHHHHHHh--------------CCHHHHHHHHHHHHhhchhcccch
Q psy11461         86 FFLGQALHEI--------------NHYDEAVKHLQRAYDLSREQNLNY  119 (253)
Q Consensus        86 ~~lg~~~~~~--------------~~~~~A~~~~~~al~l~p~~~~~~  119 (253)
                      +++|.++..+              +.++++++++.+|+.++|++...+
T Consensus       182 ~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW  229 (567)
T 1dce_A          182 HYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAW  229 (567)
T ss_dssp             HHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHH
T ss_pred             HHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHH
Confidence            9999999886              568999999999999999985433

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.11  E-value=1.2e-09  Score=90.52  Aligned_cols=101  Identities=17%  Similarity=0.044  Sum_probs=86.2

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhhCHHHHHHHHHHHHhh-------CCCcH
Q psy11461         16 ELKDEGNRYFGLRQYEEAINCYTRAIIKNPVI------PSYFTNRALCYLKLKQYVHCCDDCRKALEL-------EPSLV   82 (253)
Q Consensus        16 ~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~al~l-------~p~~~   82 (253)
                      .+..+|..+...|++++|+.+|.+++...+..      ..++.++|.+|..+|++++|+..+++++.+       .+...
T Consensus       117 ~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  196 (293)
T 3u3w_A          117 WQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDV  196 (293)
T ss_dssp             HHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHH
T ss_pred             HHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHH
Confidence            44568999999999999999999999975432      347999999999999999999999999953       23345


Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhcc
Q psy11461         83 KAQFFLGQALHEINHYDEAVKHLQRAYDLSREQN  116 (253)
Q Consensus        83 ~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~  116 (253)
                      .+++++|.++..+|++++|+.++.+++++.+...
T Consensus       197 ~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~  230 (293)
T 3u3w_A          197 KVRYNHAKALYLDSRYEESLYQVNKAIEISCRIN  230 (293)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcC
Confidence            6899999999999999999999999999988753

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=99.10  E-value=2.1e-09  Score=95.63  Aligned_cols=98  Identities=13%  Similarity=0.130  Sum_probs=84.1

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhh--------CC
Q psy11461         16 ELKDEGNRYFGLRQYEEAINCYTRAIIK--------NPVIPSYFTNRALCYLKLKQYVHCCDDCRKALEL--------EP   79 (253)
Q Consensus        16 ~~~~~g~~~~~~g~~~~A~~~y~~ai~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l--------~p   79 (253)
                      .....+..+..+|+|++|+..|.+++..        +|.....+.|+|.+|..+|+|++|+..+++++.+        +|
T Consensus       311 ~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp  390 (490)
T 3n71_A          311 DTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNA  390 (490)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCH
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCH
Confidence            3445566678899999999999999987        3444568999999999999999999999999976        34


Q ss_pred             CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhch
Q psy11461         80 SLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSR  113 (253)
Q Consensus        80 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p  113 (253)
                      +....+.++|.+|..+|++++|+.+|++|+.+-.
T Consensus       391 ~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~  424 (490)
T 3n71_A          391 QLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILL  424 (490)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence            4567899999999999999999999999998743

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.10  E-value=5.1e-10  Score=95.90  Aligned_cols=105  Identities=17%  Similarity=0.125  Sum_probs=88.3

Q ss_pred             CCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCC-------CHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCC--
Q psy11461          9 TNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPV-------IPSYFTNRALCYLKLKQYVHCCDDCRKALELEP--   79 (253)
Q Consensus         9 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~-------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p--   79 (253)
                      ..+..+..+..+|..++..|++..|+.++.+|+...+.       .+.++.++|.+|..+|++++|+..+.+++.+.+  
T Consensus       136 ~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~  215 (378)
T 3q15_A          136 DDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDI  215 (378)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             ChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc
Confidence            44567889999999999999999999999999987443       245788999999999999999999999998743  


Q ss_pred             ----CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhch
Q psy11461         80 ----SLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSR  113 (253)
Q Consensus        80 ----~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p  113 (253)
                          ....++.++|.++..+|++++|+.+|.+++.+..
T Consensus       216 ~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~  253 (378)
T 3q15_A          216 QNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSR  253 (378)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence                1346788999999999999999999999999544

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.10  E-value=4.1e-10  Score=93.09  Aligned_cols=106  Identities=15%  Similarity=0.301  Sum_probs=94.3

Q ss_pred             CcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCc--
Q psy11461         10 NNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVI------PSYFTNRALCYLKLKQYVHCCDDCRKALELEPSL--   81 (253)
Q Consensus        10 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~--   81 (253)
                      .+..+..+..+|..++..|++++|+..|.+++...+..      ..++.++|.++...|++++|+..+.+++.+.+..  
T Consensus       179 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~  258 (338)
T 3ro2_A          179 RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD  258 (338)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcc
Confidence            34556789999999999999999999999999885542      3389999999999999999999999999987665  


Q ss_pred             ----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461         82 ----VKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQ  115 (253)
Q Consensus        82 ----~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~  115 (253)
                          ..++..+|.++...|++++|+..+++++.+.+..
T Consensus       259 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~  296 (338)
T 3ro2_A          259 RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL  296 (338)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc
Confidence                7789999999999999999999999999998765

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.09  E-value=2e-09  Score=90.14  Aligned_cols=109  Identities=8%  Similarity=-0.102  Sum_probs=102.8

Q ss_pred             CCcccHHHHHHHHHHH----Hhc---cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHH--HHHHHHHHHHhhCC
Q psy11461          9 TNNLSDKELKDEGNRY----FGL---RQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYV--HCCDDCRKALELEP   79 (253)
Q Consensus         9 ~~~~~a~~~~~~g~~~----~~~---g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~--~A~~~~~~al~l~p   79 (253)
                      .+|+...+|..++..+    ...   +++.+++.++.+++..+|.+..+|..|+.++..++.++  +++..+.+++.++|
T Consensus        98 ~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~  177 (306)
T 3dra_A           98 DNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL  177 (306)
T ss_dssp             HCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT
T ss_pred             HCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC
Confidence            4688889999999999    666   89999999999999999999999999999999999999  99999999999999


Q ss_pred             CcHHHHHHHHHHHHHhCC------HHHHHHHHHHHHhhchhccc
Q psy11461         80 SLVKAQFFLGQALHEINH------YDEAVKHLQRAYDLSREQNL  117 (253)
Q Consensus        80 ~~~~a~~~lg~~~~~~~~------~~~A~~~~~~al~l~p~~~~  117 (253)
                      .|..||.+++.++..++.      ++++++++.+++.++|++..
T Consensus       178 ~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~S  221 (306)
T 3dra_A          178 KNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPS  221 (306)
T ss_dssp             TCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHH
T ss_pred             CCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCcc
Confidence            999999999999999987      99999999999999999844

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.09  E-value=4.6e-09  Score=85.53  Aligned_cols=100  Identities=18%  Similarity=0.192  Sum_probs=92.1

Q ss_pred             cccHHHHHHHHHHHHh----ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hhCHHHHHHHHHHHHhhCCCcH
Q psy11461         11 NLSDKELKDEGNRYFG----LRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLK----LKQYVHCCDDCRKALELEPSLV   82 (253)
Q Consensus        11 ~~~a~~~~~~g~~~~~----~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~l~p~~~   82 (253)
                      +..+.+++.+|..+..    .+++++|+.+|.+++..+  ++.++.++|.+|..    .+++++|+.++++++.+  +++
T Consensus        35 ~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~--~~~  110 (273)
T 1ouv_A           35 LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL--KYA  110 (273)
T ss_dssp             TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCH
T ss_pred             CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc--CCc
Confidence            4556789999999999    999999999999999985  89999999999999    99999999999999997  489


Q ss_pred             HHHHHHHHHHHH----hCCHHHHHHHHHHHHhhchh
Q psy11461         83 KAQFFLGQALHE----INHYDEAVKHLQRAYDLSRE  114 (253)
Q Consensus        83 ~a~~~lg~~~~~----~~~~~~A~~~~~~al~l~p~  114 (253)
                      .+++.+|.++..    .+++++|+..|+++++.++.
T Consensus       111 ~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~  146 (273)
T 1ouv_A          111 EGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDG  146 (273)
T ss_dssp             HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred             cHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCcH
Confidence            999999999999    99999999999999998643

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=99.09  E-value=1.1e-09  Score=92.86  Aligned_cols=113  Identities=11%  Similarity=0.060  Sum_probs=92.2

Q ss_pred             CCcccHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh-h-CHHHHHHHHHHHHhhCCCcHHHH
Q psy11461          9 TNNLSDKELKDEGNRYFGLR-QYEEAINCYTRAIIKNPVIPSYFTNRALCYLKL-K-QYVHCCDDCRKALELEPSLVKAQ   85 (253)
Q Consensus         9 ~~~~~a~~~~~~g~~~~~~g-~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~-~-~~~~A~~~~~~al~l~p~~~~a~   85 (253)
                      .+|+...+|..++.++...| .+++++.++.+++..+|.+..+|..|+.++..+ + ++++++..+.+++.++|.|..+|
T Consensus        83 ~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW  162 (349)
T 3q7a_A           83 MNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTW  162 (349)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHH
T ss_pred             hCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHH
Confidence            46777888888888888888 488888888888888888888888888888887 6 78888888888888888888888


Q ss_pred             HHHHHHHHHhCCHH--------HHHHHHHHHHhhchhcccchHH
Q psy11461         86 FFLGQALHEINHYD--------EAVKHLQRAYDLSREQNLNYGD  121 (253)
Q Consensus        86 ~~lg~~~~~~~~~~--------~A~~~~~~al~l~p~~~~~~~~  121 (253)
                      ..++.++..+|.++        ++++++.++++.+|.+..++..
T Consensus       163 ~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~  206 (349)
T 3q7a_A          163 AYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGW  206 (349)
T ss_dssp             HHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            88888888887776        8888888888888887554433

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.09  E-value=1.1e-09  Score=80.20  Aligned_cols=80  Identities=19%  Similarity=0.107  Sum_probs=76.3

Q ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q psy11461         14 DKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALH   93 (253)
Q Consensus        14 a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~   93 (253)
                      ...+..+|..++..|+|++|+..|.+++..+|.++.++.++|.++..+|++++|+..+.+++.++|++..++..++.+..
T Consensus        65 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  144 (148)
T 2dba_A           65 AVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG  144 (148)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence            88999999999999999999999999999999999999999999999999999999999999999999999988877643

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.08  E-value=8.5e-11  Score=81.84  Aligned_cols=71  Identities=21%  Similarity=0.306  Sum_probs=69.2

Q ss_pred             CCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchh
Q psy11461         44 NPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSRE  114 (253)
Q Consensus        44 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~  114 (253)
                      +|.++.++..+|.++...|++++|+..+++++.++|.+..+++.+|.++..+|++++|+..|+++++++|.
T Consensus         2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~   72 (112)
T 2kck_A            2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIED   72 (112)
T ss_dssp             CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC
T ss_pred             CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc
Confidence            68888999999999999999999999999999999999999999999999999999999999999999988

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=99.06  E-value=1.1e-09  Score=90.22  Aligned_cols=99  Identities=11%  Similarity=0.014  Sum_probs=45.7

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHhC-CCC-HHHHHHHHHHHHHhhCHHHHHHHHHHHHhhC--CC-cHHHHHHHHH
Q psy11461         16 ELKDEGNRYFGLRQYEEAINCYTRAIIKN-PVI-PSYFTNRALCYLKLKQYVHCCDDCRKALELE--PS-LVKAQFFLGQ   90 (253)
Q Consensus        16 ~~~~~g~~~~~~g~~~~A~~~y~~ai~~~-p~~-~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~--p~-~~~a~~~lg~   90 (253)
                      ..+.+|..+++.|+|++|+.+|+.++... |.. ..+++++|.++..+|++++|+.+|++++...  |. ...+++++|.
T Consensus       137 ~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~gl  216 (282)
T 4f3v_A          137 VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAM  216 (282)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHH
Confidence            44445555555555555555554443321 100 1244445555555555555555555554322  32 3344555555


Q ss_pred             HHHHhCCHHHHHHHHHHHHhhchh
Q psy11461         91 ALHEINHYDEAVKHLQRAYDLSRE  114 (253)
Q Consensus        91 ~~~~~~~~~~A~~~~~~al~l~p~  114 (253)
                      |+..+|+.++|...|++++..+|+
T Consensus       217 aL~~lGr~deA~~~l~~a~a~~P~  240 (282)
T 4f3v_A          217 ARRSQGNESAAVALLEWLQTTHPE  240 (282)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred             HHHHcCCHHHHHHHHHHHHhcCCc
Confidence            555555555555555555554443

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.05  E-value=1.1e-09  Score=84.80  Aligned_cols=108  Identities=18%  Similarity=0.118  Sum_probs=92.8

Q ss_pred             CCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHh---CCC----CHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCC-
Q psy11461          9 TNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIK---NPV----IPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS-   80 (253)
Q Consensus         9 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~---~p~----~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~-   80 (253)
                      ..+..+..+..+|..+...|++++|+..|.+++..   .++    .+.++.++|.++..+|++++|+..+.+++.+.+. 
T Consensus        61 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~  140 (203)
T 3gw4_A           61 DHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQA  140 (203)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred             CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc
Confidence            44567889999999999999999999999999998   443    3567999999999999999999999999976432 


Q ss_pred             -c----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhcc
Q psy11461         81 -L----VKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQN  116 (253)
Q Consensus        81 -~----~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~  116 (253)
                       +    ..++..+|.++...|++++|+..+++++++.....
T Consensus       141 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  181 (203)
T 3gw4_A          141 DDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAELE  181 (203)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             cchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcC
Confidence             2    34578999999999999999999999999877653

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.05  E-value=3.1e-09  Score=95.18  Aligned_cols=107  Identities=12%  Similarity=-0.029  Sum_probs=97.6

Q ss_pred             CcccHHHHHHHHHHHHh-------ccCHH-------HHHHHHHHHHH-hCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHH
Q psy11461         10 NNLSDKELKDEGNRYFG-------LRQYE-------EAINCYTRAII-KNPVIPSYFTNRALCYLKLKQYVHCCDDCRKA   74 (253)
Q Consensus        10 ~~~~a~~~~~~g~~~~~-------~g~~~-------~A~~~y~~ai~-~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a   74 (253)
                      .|..+..|..+|..+..       .|+++       +|+..|.+|+. .+|.++.+|..+|..+...|++++|...|+++
T Consensus       268 ~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~a  347 (530)
T 2ooe_A          268 LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRL  347 (530)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            36678899999999886       79987       99999999997 79999999999999999999999999999999


Q ss_pred             HhhCCCcH-HHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhcc
Q psy11461         75 LELEPSLV-KAQFFLGQALHEINHYDEAVKHLQRAYDLSREQN  116 (253)
Q Consensus        75 l~l~p~~~-~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~  116 (253)
                      +.++|.++ .+|..+|.++...|++++|...|.+|++..|...
T Consensus       348 l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~  390 (530)
T 2ooe_A          348 LAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRH  390 (530)
T ss_dssp             HHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCT
T ss_pred             hCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCch
Confidence            99999985 6999999999999999999999999999877653

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=99.02  E-value=4.1e-09  Score=72.30  Aligned_cols=67  Identities=15%  Similarity=0.238  Sum_probs=63.6

Q ss_pred             HHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHHhCCHHHHHHHHHHHHhhchhccc
Q psy11461         51 FTNRALCYLKLKQYVHCCDDCRKALELEPSLVK-AQFFLGQALHEINHYDEAVKHLQRAYDLSREQNL  117 (253)
Q Consensus        51 ~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~-a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~~  117 (253)
                      ..++|.++...|++++|+..+++++.++|++.. +++.+|.++..+|++++|+..|+++++++|++..
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~   70 (99)
T 2kc7_A            3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPA   70 (99)
T ss_dssp             THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH
Confidence            357899999999999999999999999999999 9999999999999999999999999999999754

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.01  E-value=6.5e-09  Score=93.09  Aligned_cols=111  Identities=9%  Similarity=-0.104  Sum_probs=99.4

Q ss_pred             CCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHH
Q psy11461          9 TNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIP-SYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFF   87 (253)
Q Consensus         9 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~-~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~   87 (253)
                      ..|.....|..+|..+...|+++.|+..|.+++...|.++ .+|.++|.++.+.|++++|...|.+|+...|.+...+..
T Consensus       316 ~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~  395 (530)
T 2ooe_A          316 LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVT  395 (530)
T ss_dssp             TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHH
T ss_pred             hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHH
Confidence            3578899999999999999999999999999999999986 699999999999999999999999999999988777776


Q ss_pred             HHHH-HHHhCCHHHHHHHHHHHHhhchhcccch
Q psy11461         88 LGQA-LHEINHYDEAVKHLQRAYDLSREQNLNY  119 (253)
Q Consensus        88 lg~~-~~~~~~~~~A~~~~~~al~l~p~~~~~~  119 (253)
                      .+.+ +...|++++|...|+++++..|++...+
T Consensus       396 ~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~  428 (530)
T 2ooe_A          396 AALMEYYCSKDKSVAFKIFELGLKKYGDIPEYV  428 (530)
T ss_dssp             HHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHH
Confidence            6665 3468999999999999999999875433

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=99.01  E-value=5.4e-09  Score=73.16  Aligned_cols=78  Identities=15%  Similarity=0.058  Sum_probs=68.9

Q ss_pred             ccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHH
Q psy11461         12 LSDKELKDEGNRYFGLRQYEEAINCYTRAIIKN-------PVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKA   84 (253)
Q Consensus        12 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~-------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a   84 (253)
                      .++...+.+|..++..|+|..|+..|.+|+...       +..+.++.++|.|++++|+++.|+..+++++.++|++..+
T Consensus         3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~   82 (104)
T 2v5f_A            3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRA   82 (104)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHH
Confidence            457788999999999999999999999999863       3457789999999999999999999999999999999888


Q ss_pred             HHHHH
Q psy11461         85 QFFLG   89 (253)
Q Consensus        85 ~~~lg   89 (253)
                      ..+++
T Consensus        83 ~~n~~   87 (104)
T 2v5f_A           83 NGNLK   87 (104)
T ss_dssp             HHHHH
T ss_pred             HhhHH
Confidence            87776

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.99  E-value=4.6e-09  Score=82.96  Aligned_cols=97  Identities=15%  Similarity=0.032  Sum_probs=88.9

Q ss_pred             ccHHHHHHHHHHHHhcc----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hhCHHHHHHHHHHHHhhCC--Cc
Q psy11461         12 LSDKELKDEGNRYFGLR----QYEEAINCYTRAIIKNPVIPSYFTNRALCYLK----LKQYVHCCDDCRKALELEP--SL   81 (253)
Q Consensus        12 ~~a~~~~~~g~~~~~~g----~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~l~p--~~   81 (253)
                      ..+.+++.+|..+.. +    ++++|+.+|.+++.  +.++.+++++|.+|..    .+++++|+.++++++...|  .+
T Consensus        48 g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~  124 (212)
T 3rjv_A           48 GDGDALALLAQLKIR-NPQQADYPQARQLAEKAVE--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAA  124 (212)
T ss_dssp             TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHH
T ss_pred             CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcch
Confidence            467889999999998 7    99999999999965  5789999999999988    8899999999999999988  46


Q ss_pred             HHHHHHHHHHHHH----hCCHHHHHHHHHHHHhh
Q psy11461         82 VKAQFFLGQALHE----INHYDEAVKHLQRAYDL  111 (253)
Q Consensus        82 ~~a~~~lg~~~~~----~~~~~~A~~~~~~al~l  111 (253)
                      +.+++.+|.+|..    .+++++|+..|+++.++
T Consensus       125 ~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~  158 (212)
T 3rjv_A          125 VDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL  158 (212)
T ss_dssp             HHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc
Confidence            9999999999999    88999999999999998

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.99  E-value=4.4e-09  Score=89.26  Aligned_cols=110  Identities=9%  Similarity=-0.040  Sum_probs=103.9

Q ss_pred             CCCcccHHHHHHHHHHHHhc-c-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHH--------HHHHHHHHHHhh
Q psy11461          8 TTNNLSDKELKDEGNRYFGL-R-QYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYV--------HCCDDCRKALEL   77 (253)
Q Consensus         8 ~~~~~~a~~~~~~g~~~~~~-g-~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~--------~A~~~~~~al~l   77 (253)
                      ..+|++..+|..++..+... + ++++++.++.+++..+|.+..+|..|+.++..++.++        +++..+.+++.+
T Consensus       117 ~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~  196 (349)
T 3q7a_A          117 VQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV  196 (349)
T ss_dssp             HTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH
T ss_pred             HhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh
Confidence            35789999999999999987 7 9999999999999999999999999999999999988        999999999999


Q ss_pred             CCCcHHHHHHHHHHHHHhCC-------HHHHHHHHHHHHhhchhccc
Q psy11461         78 EPSLVKAQFFLGQALHEINH-------YDEAVKHLQRAYDLSREQNL  117 (253)
Q Consensus        78 ~p~~~~a~~~lg~~~~~~~~-------~~~A~~~~~~al~l~p~~~~  117 (253)
                      +|.|..||.+++.++..++.       ++++++++.+++.++|++..
T Consensus       197 dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~S  243 (349)
T 3q7a_A          197 DGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVS  243 (349)
T ss_dssp             CTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred             CCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHH
Confidence            99999999999999999987       79999999999999999843

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.98  E-value=1.6e-08  Score=71.99  Aligned_cols=70  Identities=17%  Similarity=0.128  Sum_probs=66.5

Q ss_pred             CCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461         46 VIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQ  115 (253)
Q Consensus        46 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~  115 (253)
                      ..+..+..+|.++...|++++|+..+.+++.++|.+..+++.+|.++...|++++|+..+.+++.+.|.+
T Consensus         2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~   71 (131)
T 1elr_A            2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGREN   71 (131)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS
T ss_pred             hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcccc
Confidence            3467889999999999999999999999999999999999999999999999999999999999999976

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.97  E-value=5.3e-09  Score=82.60  Aligned_cols=97  Identities=15%  Similarity=0.097  Sum_probs=90.6

Q ss_pred             ccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh----CHHHHHHHHHHHHhhCCCcHHHHHH
Q psy11461         12 LSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLK----QYVHCCDDCRKALELEPSLVKAQFF   87 (253)
Q Consensus        12 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~----~~~~A~~~~~~al~l~p~~~~a~~~   87 (253)
                      .++.+++.+|..++..+++++|+.+|++++..  .++.+++++|.+|.. +    ++++|+.++++++.  +.++.++++
T Consensus        16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~--~g~~~a~~~   90 (212)
T 3rjv_A           16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAEKAVE--AGSKSGEIV   90 (212)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH--TTCHHHHHH
T ss_pred             CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH--CCCHHHHHH
Confidence            56889999999999999999999999999875  689999999999998 7    89999999999965  679999999


Q ss_pred             HHHHHHH----hCCHHHHHHHHHHHHhhch
Q psy11461         88 LGQALHE----INHYDEAVKHLQRAYDLSR  113 (253)
Q Consensus        88 lg~~~~~----~~~~~~A~~~~~~al~l~p  113 (253)
                      +|.+|..    .+++++|+..|+++.+.++
T Consensus        91 Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~  120 (212)
T 3rjv_A           91 LARVLVNRQAGATDVAHAITLLQDAARDSE  120 (212)
T ss_dssp             HHHHHTCGGGSSCCHHHHHHHHHHHTSSTT
T ss_pred             HHHHHHcCCCCccCHHHHHHHHHHHHHcCC
Confidence            9999998    8999999999999999988

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.97  E-value=1.1e-08  Score=76.02  Aligned_cols=88  Identities=13%  Similarity=0.096  Sum_probs=80.9

Q ss_pred             cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh---CHHHHHHHHHHHHhhC-C-CcHHHHHHHHHHHHHhCCHHHHH
Q psy11461         28 RQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLK---QYVHCCDDCRKALELE-P-SLVKAQFFLGQALHEINHYDEAV  102 (253)
Q Consensus        28 g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~---~~~~A~~~~~~al~l~-p-~~~~a~~~lg~~~~~~~~~~~A~  102 (253)
                      +....+.+.|.+.+..+|.+..+.+++|.|+.+.+   +..+++..++.+++.+ | ++..++|++|..++.+|+|++|.
T Consensus        12 ~~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~   91 (152)
T 1pc2_A           12 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL   91 (152)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred             HHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHH
Confidence            34567788899999989999999999999999988   6779999999999998 7 67899999999999999999999


Q ss_pred             HHHHHHHhhchhc
Q psy11461        103 KHLQRAYDLSREQ  115 (253)
Q Consensus       103 ~~~~~al~l~p~~  115 (253)
                      ++++++++++|++
T Consensus        92 ~y~~~lL~ieP~n  104 (152)
T 1pc2_A           92 KYVRGLLQTEPQN  104 (152)
T ss_dssp             HHHHHHHHHCTTC
T ss_pred             HHHHHHHhcCCCC
Confidence            9999999999997

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.95  E-value=4e-09  Score=92.42  Aligned_cols=93  Identities=11%  Similarity=0.060  Sum_probs=79.8

Q ss_pred             HHHHHhccCHHHHHHHHHHHHHh-----CCC---CHHHHHHHHHHHHHhhCHHHHHHHHHHHHhh--------CCCcHHH
Q psy11461         21 GNRYFGLRQYEEAINCYTRAIIK-----NPV---IPSYFTNRALCYLKLKQYVHCCDDCRKALEL--------EPSLVKA   84 (253)
Q Consensus        21 g~~~~~~g~~~~A~~~y~~ai~~-----~p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l--------~p~~~~a   84 (253)
                      +......|+|++|+..|.+++.+     .|+   ....+.|+|.+|..+|+|++|+..+++++.+        +|+....
T Consensus       305 ~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~  384 (433)
T 3qww_A          305 FRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASM  384 (433)
T ss_dssp             HHHHTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred             HHHhhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHH
Confidence            44445678999999999999986     344   4567999999999999999999999999976        3455667


Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHhhch
Q psy11461         85 QFFLGQALHEINHYDEAVKHLQRAYDLSR  113 (253)
Q Consensus        85 ~~~lg~~~~~~~~~~~A~~~~~~al~l~p  113 (253)
                      ++++|.+|..+|++++|+.+|++|+++-.
T Consensus       385 l~nLa~~~~~qg~~~eA~~~~~~Al~i~~  413 (433)
T 3qww_A          385 WLKLGRLYMGLENKAAGEKALKKAIAIME  413 (433)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999998743

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.93  E-value=3.1e-09  Score=94.57  Aligned_cols=107  Identities=16%  Similarity=0.037  Sum_probs=93.9

Q ss_pred             CCCCCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhh
Q psy11461          6 NFTTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIK--------NPVIPSYFTNRALCYLKLKQYVHCCDDCRKALEL   77 (253)
Q Consensus         6 ~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l   77 (253)
                      .-+.+|..+..+.++|..|..+|+|++|+.+|.+++.+        +|..+..+.|+|.+|..+|+|++|+..+++|+.+
T Consensus       343 lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i  422 (490)
T 3n71_A          343 FADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAI  422 (490)
T ss_dssp             BCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             cCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            34578899999999999999999999999999999977        4555678999999999999999999999999976


Q ss_pred             -----CCC---cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhc
Q psy11461         78 -----EPS---LVKAQFFLGQALHEINHYDEAVKHLQRAYDLS  112 (253)
Q Consensus        78 -----~p~---~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~  112 (253)
                           .|+   ......+++.++..++.+.+|...|.++.+-.
T Consensus       423 ~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~  465 (490)
T 3n71_A          423 LLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA  465 (490)
T ss_dssp             HHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                 344   45667899999999999999999999987654

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.93  E-value=3.6e-09  Score=87.15  Aligned_cols=97  Identities=15%  Similarity=0.090  Sum_probs=86.7

Q ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCc--HHHHHHHHHH
Q psy11461         14 DKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSL--VKAQFFLGQA   91 (253)
Q Consensus        14 a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~--~~a~~~lg~~   91 (253)
                      ......++..+...|+|++|.+.|..++...|.+. ..+.+|.++++.++|++|+..++.++...+..  ..+++++|.+
T Consensus       102 ~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~a  180 (282)
T 4f3v_A          102 LAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVA  180 (282)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHH
Confidence            45667789999999999999999999999999888 99999999999999999999999888763222  4589999999


Q ss_pred             HHHhCCHHHHHHHHHHHHhh
Q psy11461         92 LHEINHYDEAVKHLQRAYDL  111 (253)
Q Consensus        92 ~~~~~~~~~A~~~~~~al~l  111 (253)
                      +..+|++++|+..|++++.-
T Consensus       181 l~~LG~~~eAl~~l~~a~~g  200 (282)
T 4f3v_A          181 AANLALFTEAERRLTEANDS  200 (282)
T ss_dssp             HHHTTCHHHHHHHHHHHHTS
T ss_pred             HHHCCCHHHHHHHHHHHhcC
Confidence            99999999999999999853

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.90  E-value=2e-08  Score=87.91  Aligned_cols=99  Identities=13%  Similarity=0.113  Sum_probs=84.0

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHh-----CCC---CHHHHHHHHHHHHHhhCHHHHHHHHHHHHhh--------C
Q psy11461         15 KELKDEGNRYFGLRQYEEAINCYTRAIIK-----NPV---IPSYFTNRALCYLKLKQYVHCCDDCRKALEL--------E   78 (253)
Q Consensus        15 ~~~~~~g~~~~~~g~~~~A~~~y~~ai~~-----~p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l--------~   78 (253)
                      .........+..+|+|++|+..|.+++..     .|+   ....+.++|.+|..+|+|++|+..+++++.+        +
T Consensus       288 ~~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~H  367 (429)
T 3qwp_A          288 QESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSH  367 (429)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSC
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCC
Confidence            34455566778899999999999999976     333   3568999999999999999999999999976        3


Q ss_pred             CCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhch
Q psy11461         79 PSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSR  113 (253)
Q Consensus        79 p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p  113 (253)
                      |.....++++|.+|..+|++++|+.+|++|+++-.
T Consensus       368 p~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~  402 (429)
T 3qwp_A          368 PVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMR  402 (429)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence            44556799999999999999999999999998743

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.87  E-value=1.9e-08  Score=69.00  Aligned_cols=73  Identities=12%  Similarity=0.085  Sum_probs=67.6

Q ss_pred             CCcccHHHHHHHHHHHHhccC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCc
Q psy11461          9 TNNLSDKELKDEGNRYFGLRQ---YEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSL   81 (253)
Q Consensus         9 ~~~~~a~~~~~~g~~~~~~g~---~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~   81 (253)
                      ++|.++..+..+|..++..++   .++|...+.+++..+|+++.++..+|..+++.|+|++|+..+++++..+|.+
T Consensus         1 ~~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~   76 (93)
T 3bee_A            1 SNAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN   76 (93)
T ss_dssp             -CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred             CCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            367889999999999976655   7999999999999999999999999999999999999999999999999984

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=98.81  E-value=1.2e-07  Score=80.64  Aligned_cols=105  Identities=10%  Similarity=0.001  Sum_probs=70.1

Q ss_pred             CcccHHHHHHHHHHHHhccC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHH-------HHHH-HHH--HHHh
Q psy11461         10 NNLSDKELKDEGNRYFGLRQ---YEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYV-------HCCD-DCR--KALE   76 (253)
Q Consensus        10 ~~~~a~~~~~~g~~~~~~g~---~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~-------~A~~-~~~--~al~   76 (253)
                      ....+-.++..|..++..+.   +..|+.+|.+|++++|+++.++..++.||.....+.       .++. .+.  .++.
T Consensus       192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~  271 (372)
T 3ly7_A          192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLP  271 (372)
T ss_dssp             SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCG
T ss_pred             CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcc
Confidence            34467778888988887644   589999999999999999999998888775322110       1111 111  1234


Q ss_pred             hCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchh
Q psy11461         77 LEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSRE  114 (253)
Q Consensus        77 l~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~  114 (253)
                      ++|.++.++..+|.++...|++++|+..+++|+.++|+
T Consensus       272 ~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s  309 (372)
T 3ly7_A          272 ELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS  309 (372)
T ss_dssp             GGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC
T ss_pred             cCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Confidence            55666666666666666667777777777777777643

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.80  E-value=5.8e-08  Score=82.50  Aligned_cols=101  Identities=17%  Similarity=0.086  Sum_probs=88.6

Q ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCC-----
Q psy11461         14 DKELKDEGNRYFGLRQYEEAINCYTRAIIKN--------PVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS-----   80 (253)
Q Consensus        14 a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~--------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~-----   80 (253)
                      +..+..+|..++..|++++|+..|.+++...        |....++.++|.++...|++++|...+.+++.+.+.     
T Consensus        93 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  172 (373)
T 1hz4_A           93 LWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQ  172 (373)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGG
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHH
Confidence            4567889999999999999999999999874        334567889999999999999999999999998765     


Q ss_pred             cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchh
Q psy11461         81 LVKAQFFLGQALHEINHYDEAVKHLQRAYDLSRE  114 (253)
Q Consensus        81 ~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~  114 (253)
                      ...++..+|.++...|++++|...+.+++.+.+.
T Consensus       173 ~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~  206 (373)
T 1hz4_A          173 QLQCLAMLIQCSLARGDLDNARSQLNRLENLLGN  206 (373)
T ss_dssp             GHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Confidence            3567889999999999999999999999988654

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.79  E-value=6.2e-08  Score=82.31  Aligned_cols=103  Identities=10%  Similarity=-0.043  Sum_probs=86.7

Q ss_pred             cHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhhCHHHHHHHHHHHHhhC--------
Q psy11461         13 SDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVI------PSYFTNRALCYLKLKQYVHCCDDCRKALELE--------   78 (253)
Q Consensus        13 ~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~--------   78 (253)
                      .+..+..+|..++..|+++.|+..+.+++...|..      ..++.++|.++..+|++++|+..+++++.+.        
T Consensus        52 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~  131 (373)
T 1hz4_A           52 RIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQL  131 (373)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTS
T ss_pred             HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccC
Confidence            34577889999999999999999999999875543      2347889999999999999999999999875        


Q ss_pred             CCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461         79 PSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQ  115 (253)
Q Consensus        79 p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~  115 (253)
                      |....++..+|.++...|++++|...+.+++.+.+..
T Consensus       132 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  168 (373)
T 1hz4_A          132 PMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSY  168 (373)
T ss_dssp             THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTS
T ss_pred             cHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcc
Confidence            3345678889999999999999999999999988764

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.77  E-value=1.3e-07  Score=69.55  Aligned_cols=91  Identities=15%  Similarity=0.038  Sum_probs=84.0

Q ss_pred             HHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH-
Q psy11461         20 EGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLK----LKQYVHCCDDCRKALELEPSLVKAQFFLGQALHE-   94 (253)
Q Consensus        20 ~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~-   94 (253)
                      +|..+...+.++.|+.+|+++...  .++.+++++|.+|..    .+++++|+.++++|.+.  .++.+++++|.+|.. 
T Consensus        31 lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G  106 (138)
T 1klx_A           31 LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAG  106 (138)
T ss_dssp             HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHT
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCC
Confidence            899999999999999999999987  688999999999999    89999999999999986  689999999999999 


Q ss_pred             ---hCCHHHHHHHHHHHHhhchh
Q psy11461         95 ---INHYDEAVKHLQRAYDLSRE  114 (253)
Q Consensus        95 ---~~~~~~A~~~~~~al~l~p~  114 (253)
                         .+++++|+..|++|.+.+..
T Consensus       107 ~g~~~d~~~A~~~~~~Aa~~g~~  129 (138)
T 1klx_A          107 KGVVKNEKQAVKTFEKACRLGSE  129 (138)
T ss_dssp             SSSCCCHHHHHHHHHHHHHTTCH
T ss_pred             CCCCcCHHHHHHHHHHHHHCCCH
Confidence               89999999999999988543

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=98.72  E-value=4.8e-07  Score=80.06  Aligned_cols=96  Identities=22%  Similarity=0.183  Sum_probs=62.4

Q ss_pred             cHHHHHHHHHHHHhc-----cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh---CHHHHHHHHHHHHhhCCCcHHH
Q psy11461         13 SDKELKDEGNRYFGL-----RQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLK---QYVHCCDDCRKALELEPSLVKA   84 (253)
Q Consensus        13 ~a~~~~~~g~~~~~~-----g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~---~~~~A~~~~~~al~l~p~~~~a   84 (253)
                      .+.+++.+|..+...     +++++|+..|.+++..  .++.+++++|.+|...|   ++++|+.+++++++.  .++.+
T Consensus       290 ~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a  365 (490)
T 2xm6_A          290 NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ--GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAA  365 (490)
T ss_dssp             CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHH
T ss_pred             CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHH
Confidence            455666677666665     6777777777776664  34566666666666643   666667777666665  45666


Q ss_pred             HHHHHHHHHH----hCCHHHHHHHHHHHHhhc
Q psy11461         85 QFFLGQALHE----INHYDEAVKHLQRAYDLS  112 (253)
Q Consensus        85 ~~~lg~~~~~----~~~~~~A~~~~~~al~l~  112 (253)
                      ++.+|.++..    .+++++|+..|+++.+.+
T Consensus       366 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~  397 (490)
T 2xm6_A          366 QFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG  397 (490)
T ss_dssp             HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC
Confidence            6666666666    666666666666666653

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=98.68  E-value=1.8e-06  Score=72.00  Aligned_cols=103  Identities=8%  Similarity=-0.126  Sum_probs=85.3

Q ss_pred             ccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCC----cHHHH
Q psy11461         12 LSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNP--VIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS----LVKAQ   85 (253)
Q Consensus        12 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p--~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~----~~~a~   85 (253)
                      .....+..+|..+...|++++|+..+.++|..+|  .+..++...+.+++++|+.+.|.+.+++..+.+|+    +-...
T Consensus        98 ~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l  177 (310)
T 3mv2_B           98 NSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMI  177 (310)
T ss_dssp             CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHH
Confidence            3455667899999999999999999999999887  78889999999999999999999999999999883    23334


Q ss_pred             HHH--HHHHHHhC--CHHHHHHHHHHHHhhchh
Q psy11461         86 FFL--GQALHEIN--HYDEAVKHLQRAYDLSRE  114 (253)
Q Consensus        86 ~~l--g~~~~~~~--~~~~A~~~~~~al~l~p~  114 (253)
                      ..+  |++.+..|  ++.+|...|..+....|+
T Consensus       178 ~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~  210 (310)
T 3mv2_B          178 LNLAESYIKFATNKETATSNFYYYEELSQTFPT  210 (310)
T ss_dssp             HHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCS
T ss_pred             HHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCC
Confidence            444  54566667  899999999998887775

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.66  E-value=1.5e-07  Score=69.89  Aligned_cols=82  Identities=16%  Similarity=0.100  Sum_probs=73.4

Q ss_pred             CcccHHHHHHHHHHHHhcc---CHHHHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHH
Q psy11461         10 NNLSDKELKDEGNRYFGLR---QYEEAINCYTRAIIKN-P-VIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKA   84 (253)
Q Consensus        10 ~~~~a~~~~~~g~~~~~~g---~~~~A~~~y~~ai~~~-p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a   84 (253)
                      .+.+..+.|++|.++.+.+   ++++++..++..+..+ | ....+++++|..|+++++|++|.++++++++++|+|..+
T Consensus        28 ~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA  107 (152)
T 1pc2_A           28 GSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQA  107 (152)
T ss_dssp             TCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHH
Confidence            3467899999999999988   7789999999999998 7 568999999999999999999999999999999999988


Q ss_pred             HHHHHHH
Q psy11461         85 QFFLGQA   91 (253)
Q Consensus        85 ~~~lg~~   91 (253)
                      ...+..+
T Consensus       108 ~~Lk~~i  114 (152)
T 1pc2_A          108 KELERLI  114 (152)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7655433

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.63  E-value=6.4e-07  Score=62.38  Aligned_cols=70  Identities=16%  Similarity=0.067  Sum_probs=63.3

Q ss_pred             CHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhC-------CCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhcc
Q psy11461         47 IPSYFTNRALCYLKLKQYVHCCDDCRKALELE-------PSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQN  116 (253)
Q Consensus        47 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~-------p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~  116 (253)
                      ++.-.+.+|..++..++|..|+.+++.|+...       +....++..+|.++..+|+++.|+..+++++++.|++.
T Consensus         4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~   80 (104)
T 2v5f_A            4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQ   80 (104)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH
Confidence            45567899999999999999999999999863       34678899999999999999999999999999999973

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=98.60  E-value=3.3e-06  Score=74.70  Aligned_cols=97  Identities=16%  Similarity=0.011  Sum_probs=84.4

Q ss_pred             ccHHHHHHHHHHHHh----ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh-----hCHHHHHHHHHHHHhhCCCcH
Q psy11461         12 LSDKELKDEGNRYFG----LRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKL-----KQYVHCCDDCRKALELEPSLV   82 (253)
Q Consensus        12 ~~a~~~~~~g~~~~~----~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~-----~~~~~A~~~~~~al~l~p~~~   82 (253)
                      ..+.+++.+|..+..    .+++++|+.+|++++..  .++.+++++|.+|...     +++++|+.+++++++.  .+.
T Consensus       253 ~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~--~~~  328 (490)
T 2xm6_A          253 GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ--GNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ--GDA  328 (490)
T ss_dssp             TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT--TCH
T ss_pred             CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc--CCH
Confidence            456788899999988    89999999999999865  5788999999999988     8999999999999886  567


Q ss_pred             HHHHHHHHHHHHhC---CHHHHHHHHHHHHhhc
Q psy11461         83 KAQFFLGQALHEIN---HYDEAVKHLQRAYDLS  112 (253)
Q Consensus        83 ~a~~~lg~~~~~~~---~~~~A~~~~~~al~l~  112 (253)
                      .+++.+|.++...|   ++++|+..|+++.+.+
T Consensus       329 ~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~  361 (490)
T 2xm6_A          329 TAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG  361 (490)
T ss_dssp             HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC
Confidence            89999999998866   7899999999999873

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=98.58  E-value=7.1e-07  Score=73.19  Aligned_cols=106  Identities=14%  Similarity=0.034  Sum_probs=91.3

Q ss_pred             CcccHHHHHHHHHHHHh-----ccC------HHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHh-----hCHHHHHHHH
Q psy11461         10 NNLSDKELKDEGNRYFG-----LRQ------YEEAINCYTRAIIKNPV--IPSYFTNRALCYLKL-----KQYVHCCDDC   71 (253)
Q Consensus        10 ~~~~a~~~~~~g~~~~~-----~g~------~~~A~~~y~~ai~~~p~--~~~~~~~~a~~~~~~-----~~~~~A~~~~   71 (253)
                      ++.++..++..|.....     .|.      ...|...+.++++++|+  +..+|..+|..|.+.     |+.++|..+|
T Consensus       148 ~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~f  227 (301)
T 3u64_A          148 TRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAF  227 (301)
T ss_dssp             CGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHH
T ss_pred             CccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHH
Confidence            46677777776665522     233      46888999999999999  778999999999995     9999999999


Q ss_pred             HHHHhhCCCc-HHHHHHHHHHHHHh-CCHHHHHHHHHHHHhhchhc
Q psy11461         72 RKALELEPSL-VKAQFFLGQALHEI-NHYDEAVKHLQRAYDLSREQ  115 (253)
Q Consensus        72 ~~al~l~p~~-~~a~~~lg~~~~~~-~~~~~A~~~~~~al~l~p~~  115 (253)
                      ++|++++|+. +.+++.+|..++.. |++++|.+.+++|+...|..
T Consensus       228 erAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~  273 (301)
T 3u64_A          228 EHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPES  273 (301)
T ss_dssp             HHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred             HHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence            9999999975 99999999999884 99999999999999999884

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=98.56  E-value=2.8e-07  Score=81.09  Aligned_cols=94  Identities=13%  Similarity=0.049  Sum_probs=76.8

Q ss_pred             HHHHHHHHHHhcc---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh----hCHHHHHHHHHHHHhhCCCcHHHHHHH
Q psy11461         16 ELKDEGNRYFGLR---QYEEAINCYTRAIIKNPVIPSYFTNRALCYLKL----KQYVHCCDDCRKALELEPSLVKAQFFL   88 (253)
Q Consensus        16 ~~~~~g~~~~~~g---~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~----~~~~~A~~~~~~al~l~p~~~~a~~~l   88 (253)
                      +++.+|..+...|   ++.+|+..|.+++...|..+..++++|.+|...    +++++|+.+|+++.   |.++.+++++
T Consensus       178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~L  254 (452)
T 3e4b_A          178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSL  254 (452)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHH
T ss_pred             HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHH
Confidence            7788888888888   888888888888888888888888888888665    68888888888887   7888888888


Q ss_pred             HHH-H--HHhCCHHHHHHHHHHHHhhc
Q psy11461         89 GQA-L--HEINHYDEAVKHLQRAYDLS  112 (253)
Q Consensus        89 g~~-~--~~~~~~~~A~~~~~~al~l~  112 (253)
                      |.+ +  ...+++++|+..|+++.+.+
T Consensus       255 g~~~~~~~~~~d~~~A~~~~~~Aa~~g  281 (452)
T 3e4b_A          255 AQLLYDFPELGDVEQMMKYLDNGRAAD  281 (452)
T ss_dssp             HHHHHHSGGGCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHhCCCCCCHHHHHHHHHHHHHCC
Confidence            887 4  45778888888888887654

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=98.48  E-value=3.2e-06  Score=60.60  Aligned_cols=93  Identities=12%  Similarity=0.098  Sum_probs=81.6

Q ss_pred             HHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHH---HHHHHHHHHhhC-C-CcHHHHHHHHHHHHHhCCH
Q psy11461         24 YFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVH---CCDDCRKALELE-P-SLVKAQFFLGQALHEINHY   98 (253)
Q Consensus        24 ~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~---A~~~~~~al~l~-p-~~~~a~~~lg~~~~~~~~~   98 (253)
                      .........+...|.+.+..++.+..+.+++|.++.+..+...   ++..+...+..+ | .....+|.+|..++.+|+|
T Consensus        11 ~~~~~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y   90 (126)
T 1nzn_A           11 LVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEY   90 (126)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             cCCHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhH
Confidence            3344556778888999988888999999999999999887666   999999999877 5 5778999999999999999


Q ss_pred             HHHHHHHHHHHhhchhcc
Q psy11461         99 DEAVKHLQRAYDLSREQN  116 (253)
Q Consensus        99 ~~A~~~~~~al~l~p~~~  116 (253)
                      ..|.+++...|+..|++.
T Consensus        91 ~~A~~~~~~lL~~eP~n~  108 (126)
T 1nzn_A           91 EKALKYVRGLLQTEPQNN  108 (126)
T ss_dssp             HHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHHhCCCCH
Confidence            999999999999999983

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=98.46  E-value=1.3e-05  Score=78.42  Aligned_cols=93  Identities=13%  Similarity=0.016  Sum_probs=79.0

Q ss_pred             cccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCC----------
Q psy11461         11 NLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS----------   80 (253)
Q Consensus        11 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~----------   80 (253)
                      ...+..|+.+|..+...|++.+|+.+|.+|     +++..|.+.|.++.++|+|++|++.+..|.+..++          
T Consensus      1102 vn~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~Lafa 1176 (1630)
T 1xi4_A         1102 CNEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFA 1176 (1630)
T ss_pred             cCCHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHH
Confidence            356788999999999999999999999876     78889999999999999999999999887755532          


Q ss_pred             -----------------cHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q psy11461         81 -----------------LVKAQFFLGQALHEINHYDEAVKHLQRA  108 (253)
Q Consensus        81 -----------------~~~a~~~lg~~~~~~~~~~~A~~~~~~a  108 (253)
                                       +...+..+|..+...|+|++|..+|.+|
T Consensus      1177 YAKl~rleele~fI~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA 1221 (1630)
T 1xi4_A         1177 LAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV 1221 (1630)
T ss_pred             HHhhcCHHHHHHHHhCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh
Confidence                             2345677888888899999999888887

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=98.44  E-value=1.8e-06  Score=75.94  Aligned_cols=97  Identities=16%  Similarity=0.064  Sum_probs=85.9

Q ss_pred             cccHHHHHHHHHH-H--HhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh-----CHHHHHHHHHHHHhhCCCcH
Q psy11461         11 NLSDKELKDEGNR-Y--FGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLK-----QYVHCCDDCRKALELEPSLV   82 (253)
Q Consensus        11 ~~~a~~~~~~g~~-~--~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~-----~~~~A~~~~~~al~l~p~~~   82 (253)
                      +..+.+++.+|.. +  ...+++++|+.+|++++..  .++.+++++|.+|. .|     ++++|+.+|+++.   +.++
T Consensus       245 ~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~  318 (452)
T 3e4b_A          245 PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREV  318 (452)
T ss_dssp             GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCH
T ss_pred             CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCH
Confidence            5678899999998 4  5789999999999999865  58999999999998 56     9999999999999   8999


Q ss_pred             HHHHHHHHHHHH----hCCHHHHHHHHHHHHhhch
Q psy11461         83 KAQFFLGQALHE----INHYDEAVKHLQRAYDLSR  113 (253)
Q Consensus        83 ~a~~~lg~~~~~----~~~~~~A~~~~~~al~l~p  113 (253)
                      .+++++|.+|..    ..++++|+..|+++.+.+.
T Consensus       319 ~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~  353 (452)
T 3e4b_A          319 AADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ  353 (452)
T ss_dssp             HHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh
Confidence            999999998887    3499999999999998643

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.36  E-value=8e-07  Score=77.76  Aligned_cols=90  Identities=18%  Similarity=0.094  Sum_probs=74.2

Q ss_pred             CCCCCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhh
Q psy11461          6 NFTTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIK--------NPVIPSYFTNRALCYLKLKQYVHCCDDCRKALEL   77 (253)
Q Consensus         6 ~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l   77 (253)
                      .-+.+|..+..+.++|..|..+|+|++|+.+|.+++..        +|..+..++|+|.+|..+|++++|+..+++|+.+
T Consensus       321 lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i  400 (429)
T 3qwp_A          321 LPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDI  400 (429)
T ss_dssp             CCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence            44578889999999999999999999999999999976        4455668999999999999999999999999976


Q ss_pred             -----CCCcH---HHHHHHHHHHHHh
Q psy11461         78 -----EPSLV---KAQFFLGQALHEI   95 (253)
Q Consensus        78 -----~p~~~---~a~~~lg~~~~~~   95 (253)
                           .|+++   ..+.+++.+...+
T Consensus       401 ~~~~lG~~Hp~~~~~~~~l~~~~~e~  426 (429)
T 3qwp_A          401 MRVTHGREHSLIEDLILLLEECDANI  426 (429)
T ss_dssp             HHHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred             HHHhcCCCChHHHHHHHHHHHHHHHH
Confidence                 34443   4455666665543

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.32  E-value=1.2e-05  Score=69.21  Aligned_cols=60  Identities=17%  Similarity=0.166  Sum_probs=33.5

Q ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHHhCCCCH-----------------HHHHHHHHHHHHhhCHHHHHHHHHHHHh
Q psy11461         17 LKDEGNRYFGLRQYEEAINCYTRAIIKNPVIP-----------------SYFTNRALCYLKLKQYVHCCDDCRKALE   76 (253)
Q Consensus        17 ~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~-----------------~~~~~~a~~~~~~~~~~~A~~~~~~al~   76 (253)
                      ....|..+...|+|.+|++.|.+++...|...                 .++.++|.+|..+|+|++|+..+.+++.
T Consensus         7 ~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~   83 (434)
T 4b4t_Q            7 KLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTE   83 (434)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            44455555666666666666666665555422                 2355556666666666666655555444

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=98.29  E-value=1.6e-05  Score=77.78  Aligned_cols=95  Identities=21%  Similarity=0.285  Sum_probs=80.2

Q ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCC--------------
Q psy11461         14 DKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEP--------------   79 (253)
Q Consensus        14 a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p--------------   79 (253)
                      ...+...|..++..|+|++|+.+|.++        ..|..+|.||.++|++++|++.+++|....+              
T Consensus      1195 ~ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acve~~Ef 1266 (1630)
T 1xi4_A         1195 NAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEF 1266 (1630)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhhhhHH
Confidence            356778999999999999999999996        4799999999999999999999999955433              


Q ss_pred             -----------CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhcc
Q psy11461         80 -----------SLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQN  116 (253)
Q Consensus        80 -----------~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~  116 (253)
                                 .++..+..++..|...|.+++|+.++++++.+++.+.
T Consensus      1267 ~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~ 1314 (1630)
T 1xi4_A         1267 RLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHM 1314 (1630)
T ss_pred             HHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHh
Confidence                       1334455667778889999999999999999997753

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.28  E-value=1.4e-06  Score=76.27  Aligned_cols=72  Identities=13%  Similarity=0.094  Sum_probs=65.4

Q ss_pred             CCCCCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhh
Q psy11461          6 NFTTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIK--------NPVIPSYFTNRALCYLKLKQYVHCCDDCRKALEL   77 (253)
Q Consensus         6 ~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l   77 (253)
                      .-+.+|..+..+.++|..|..+|+|++|+.+|.+++.+        +|+.+..++|+|.+|..+|++++|+..+++|+.+
T Consensus       332 lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i  411 (433)
T 3qww_A          332 FEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAI  411 (433)
T ss_dssp             BCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             cChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence            44578999999999999999999999999999999977        4555678999999999999999999999999986

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.25  E-value=2.2e-05  Score=67.63  Aligned_cols=69  Identities=19%  Similarity=0.174  Sum_probs=60.7

Q ss_pred             HHHHHHHHHHHHHhhCHHHHHHHHHHHHhh------CCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhcc
Q psy11461         48 PSYFTNRALCYLKLKQYVHCCDDCRKALEL------EPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQN  116 (253)
Q Consensus        48 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~l------~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~  116 (253)
                      ..++.++|.+|...|+|.+|+..+.+++..      .+....++..+|.++..+|++++|...+++++.+.+...
T Consensus       135 ~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~  209 (434)
T 4b4t_Q          135 HSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIY  209 (434)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCC
Confidence            567889999999999999999999999875      234567899999999999999999999999999877653

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.24  E-value=6.1e-06  Score=60.39  Aligned_cols=80  Identities=20%  Similarity=0.169  Sum_probs=71.6

Q ss_pred             ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH----hCCHHHHH
Q psy11461         27 LRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHE----INHYDEAV  102 (253)
Q Consensus        27 ~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~----~~~~~~A~  102 (253)
                      .+++++|+.+|+++....+..+.    +|.+|...+.+++|+.+++++...  .++.+++++|.+|..    .+++++|+
T Consensus         8 ~~d~~~A~~~~~~aa~~g~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~   81 (138)
T 1klx_A            8 KKDLKKAIQYYVKACELNEMFGC----LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAA   81 (138)
T ss_dssp             HHHHHHHHHHHHHHHHTTCTTHH----HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred             ccCHHHHHHHHHHHHcCCCHhhh----HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHH
Confidence            36789999999999998754443    999999999999999999999986  789999999999999    89999999


Q ss_pred             HHHHHHHhhc
Q psy11461        103 KHLQRAYDLS  112 (253)
Q Consensus       103 ~~~~~al~l~  112 (253)
                      ..|++|.+..
T Consensus        82 ~~~~~Aa~~g   91 (138)
T 1klx_A           82 QYYSKACGLN   91 (138)
T ss_dssp             HHHHHHHHTT
T ss_pred             HHHHHHHcCC
Confidence            9999999873

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=98.23  E-value=2.1e-05  Score=64.55  Aligned_cols=75  Identities=11%  Similarity=-0.044  Sum_probs=61.8

Q ss_pred             CCCCHHHHHHHHHHHHH-----------hhCHHHHHHHHHHHHhhCCC--cHHHHHHHHHHHHHh-----CCHHHHHHHH
Q psy11461         44 NPVIPSYFTNRALCYLK-----------LKQYVHCCDDCRKALELEPS--LVKAQFFLGQALHEI-----NHYDEAVKHL  105 (253)
Q Consensus        44 ~p~~~~~~~~~a~~~~~-----------~~~~~~A~~~~~~al~l~p~--~~~a~~~lg~~~~~~-----~~~~~A~~~~  105 (253)
                      +|.++.+++..|.....           ++....|...+++|+++||+  +..+|..+|..|...     |+.+.|.++|
T Consensus       148 ~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~f  227 (301)
T 3u64_A          148 TRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAF  227 (301)
T ss_dssp             CGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHH
T ss_pred             CccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHH
Confidence            56667777777766654           22367899999999999999  677999999999996     9999999999


Q ss_pred             HHHHhhchhc-ccc
Q psy11461        106 QRAYDLSREQ-NLN  118 (253)
Q Consensus       106 ~~al~l~p~~-~~~  118 (253)
                      ++|++++|+. ...
T Consensus       228 erAL~LnP~~~id~  241 (301)
T 3u64_A          228 EHLTRYCSAHDPDH  241 (301)
T ss_dssp             HHHHHHCCTTCSHH
T ss_pred             HHHHHhCCCCCchH
Confidence            9999999974 443

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=98.20  E-value=1.1e-05  Score=67.16  Aligned_cols=103  Identities=8%  Similarity=-0.156  Sum_probs=81.7

Q ss_pred             cccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCC----CHHHHHHHH--HHHHHhh--CHHHHHHHHHHHHhhCCCcH
Q psy11461         11 NLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPV----IPSYFTNRA--LCYLKLK--QYVHCCDDCRKALELEPSLV   82 (253)
Q Consensus        11 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~----~~~~~~~~a--~~~~~~~--~~~~A~~~~~~al~l~p~~~   82 (253)
                      +.....+...+.++.+.|+.+.|.+.+++....+|+    +-....+++  .+.+..|  ++.+|...|+++....|++.
T Consensus       133 ~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~  212 (310)
T 3mv2_B          133 EGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWK  212 (310)
T ss_dssp             TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHH
T ss_pred             cCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcc
Confidence            467788888999999999999999999999999883    223444454  4466667  99999999999998888733


Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHhhchh
Q psy11461         83 KAQFFLGQALHEINHYDEAVKHLQRAYDLSRE  114 (253)
Q Consensus        83 ~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~  114 (253)
                      .....++ ++..+|++++|...++.+++..|+
T Consensus       213 ~~~lLln-~~~~~g~~~eAe~~L~~l~~~~p~  243 (310)
T 3mv2_B          213 TQLGLLN-LHLQQRNIAEAQGIVELLLSDYYS  243 (310)
T ss_dssp             HHHHHHH-HHHHHTCHHHHHHHHHHHHSHHHH
T ss_pred             cHHHHHH-HHHHcCCHHHHHHHHHHHHHhccc
Confidence            3333333 899999999999999998888644

>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2

Probab=98.11  E-value=2e-06  Score=59.28  Aligned_cols=36  Identities=33%  Similarity=0.519  Sum_probs=34.0

Q ss_pred             CCCCCCCCCCCCCCCcCcHHHHHHHHHHhhhcCccc
Q psy11461        216 HFDPVTRVKLSADQLIPNFAMKEVVDNFLQENDWAY  251 (253)
Q Consensus       216 ~~DP~tr~~l~~~~l~pN~~lk~a~~~~l~~n~wa~  251 (253)
                      ..+|+||++++..+|+||..||++|+.|+.+|+|+-
T Consensus        58 ~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~~~~~~~   93 (98)
T 1wgm_A           58 QTDPFNRSPLTMDQIRPNTELKEKIQRWLAERKQQS   93 (98)
T ss_dssp             CBCTTTCSBCCTTTSEECHHHHHHHHHHHHHSTTCS
T ss_pred             CCCCCCCCCCChhhceEcHHHHHHHHHHHHHcchhh
Confidence            479999999999999999999999999999999973

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=98.10  E-value=2.4e-05  Score=58.60  Aligned_cols=96  Identities=11%  Similarity=0.099  Sum_probs=78.0

Q ss_pred             cHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCH---------HHHHHHHHHHHHhhCHHHHHHHHHHHHhhCC---C
Q psy11461         13 SDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIP---------SYFTNRALCYLKLKQYVHCCDDCRKALELEP---S   80 (253)
Q Consensus        13 ~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~---------~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p---~   80 (253)
                      ....++.....++..|.|+.|+-.+..++....+++         .++..+|.+++..++|..|...|++|+.+..   .
T Consensus        19 ~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k   98 (167)
T 3ffl_A           19 SHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSK   98 (167)
T ss_dssp             --CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--
T ss_pred             cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhc
Confidence            345688999999999999999999999877643322         3788999999999999999999999976521   1


Q ss_pred             c----------------------HHHHHHHHHHHHHhCCHHHHHHHHHHH
Q psy11461         81 L----------------------VKAQFFLGQALHEINHYDEAVKHLQRA  108 (253)
Q Consensus        81 ~----------------------~~a~~~lg~~~~~~~~~~~A~~~~~~a  108 (253)
                      +                      ....|.+|.|+.+++++.+|+..++..
T Consensus        99 ~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I  148 (167)
T 3ffl_A           99 TSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGI  148 (167)
T ss_dssp             ------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred             CCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence            1                      257799999999999999999987753

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=98.05  E-value=3.4e-06  Score=73.48  Aligned_cols=88  Identities=22%  Similarity=0.337  Sum_probs=53.2

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHH-----
Q psy11461         15 KELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLG-----   89 (253)
Q Consensus        15 ~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg-----   89 (253)
                      .+|..+|..++..|+|++|+.+|.++        ..|..+|.|+.++|+|++|++.++++     ++++.|...+     
T Consensus       123 ~a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~  189 (449)
T 1b89_A          123 AHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVD  189 (449)
T ss_dssp             --------------CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHh--------hhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHH
Confidence            37888899999999999999999876        36888889999999999999888888     2444444433     


Q ss_pred             -------------------------HHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461         90 -------------------------QALHEINHYDEAVKHLQRAYDLSREQ  115 (253)
Q Consensus        90 -------------------------~~~~~~~~~~~A~~~~~~al~l~p~~  115 (253)
                                               .+|...|.+++|+.++++++.+++..
T Consensus       190 ~~ef~lA~~~~l~L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah  240 (449)
T 1b89_A          190 GKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAH  240 (449)
T ss_dssp             TTCHHHHHHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCC
T ss_pred             cCcHHHHHHHHHHHHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHH
Confidence                                     45555666666666666666666443

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=98.05  E-value=1.2e-05  Score=70.10  Aligned_cols=96  Identities=13%  Similarity=0.104  Sum_probs=74.8

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHhCC---------------------------CCHHHHHHHHHHHHHhhCHHHHH
Q psy11461         16 ELKDEGNRYFGLRQYEEAINCYTRAIIKNP---------------------------VIPSYFTNRALCYLKLKQYVHCC   68 (253)
Q Consensus        16 ~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p---------------------------~~~~~~~~~a~~~~~~~~~~~A~   68 (253)
                      .|..+|.++++.|+|++|+++|.++.  +|                           .++.-...+..+|.+.|+|++|+
T Consensus       150 n~~~LA~~L~~Lg~yq~AVea~~KA~--~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~l~~lv~~Yek~G~~eEai  227 (449)
T 1b89_A          150 NFGRLASTLVHLGEYQAAVDGARKAN--STRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELI  227 (449)
T ss_dssp             CHHHHHHHHHTTTCHHHHHHHHHHHT--CHHHHHHHHHHHHHTTCHHHHHHTTTTTTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             hHHHHHHHHHHhccHHHHHHHHHHcC--CchhHHHHHHHHHHcCcHHHHHHHHHHHHhCHhhHHHHHHHHHHCCCHHHHH
Confidence            46678999999999999999999982  22                           12222333457888999999999


Q ss_pred             HHHHHHHhhCCCcHHHHHHHHHHHHHh--CCHHHHHHHHHHHHhhch
Q psy11461         69 DDCRKALELEPSLVKAQFFLGQALHEI--NHYDEAVKHLQRAYDLSR  113 (253)
Q Consensus        69 ~~~~~al~l~p~~~~a~~~lg~~~~~~--~~~~~A~~~~~~al~l~p  113 (253)
                      ..+++++.+++.+...+..+|.++.+-  ++..+.++.|...+.+.|
T Consensus       228 ~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k  274 (449)
T 1b89_A          228 TMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPK  274 (449)
T ss_dssp             HHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHH
T ss_pred             HHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcH
Confidence            999999999999999999999988664  577788887776655443

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=98.00  E-value=4.3e-05  Score=54.73  Aligned_cols=81  Identities=17%  Similarity=0.113  Sum_probs=70.6

Q ss_pred             cccHHHHHHHHHHHHhccCHHH---HHHHHHHHHHhC-C-CCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHH
Q psy11461         11 NLSDKELKDEGNRYFGLRQYEE---AINCYTRAIIKN-P-VIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQ   85 (253)
Q Consensus        11 ~~~a~~~~~~g~~~~~~g~~~~---A~~~y~~ai~~~-p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~   85 (253)
                      +....+-|++|.++.+......   +|..+...+..+ | ..-.+.+.+|..++++|+|.+|...++.+++++|+|..|.
T Consensus        32 ~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~  111 (126)
T 1nzn_A           32 SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAK  111 (126)
T ss_dssp             CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHH
Confidence            3567889999999999888877   999999998876 5 4667999999999999999999999999999999999887


Q ss_pred             HHHHHH
Q psy11461         86 FFLGQA   91 (253)
Q Consensus        86 ~~lg~~   91 (253)
                      .....+
T Consensus       112 ~Lk~~i  117 (126)
T 1nzn_A          112 ELERLI  117 (126)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            655443

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=97.89  E-value=0.00025  Score=65.50  Aligned_cols=102  Identities=9%  Similarity=-0.055  Sum_probs=88.9

Q ss_pred             CcccHHHHHHHHHHHHhccCHHHHH-HHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhC----------
Q psy11461         10 NNLSDKELKDEGNRYFGLRQYEEAI-NCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELE----------   78 (253)
Q Consensus        10 ~~~~a~~~~~~g~~~~~~g~~~~A~-~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~----------   78 (253)
                      .|..+..|+..+..+...|+.++|. ..|.+|+...|.+..+|...+......|+++.|...|++++..-          
T Consensus       339 ~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~  418 (679)
T 4e6h_A          339 VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMED  418 (679)
T ss_dssp             TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence            4567888999999999999999997 99999999999999999999999999999999999999998752          


Q ss_pred             -CC-----------cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Q psy11461         79 -PS-----------LVKAQFFLGQALHEINHYDEAVKHLQRAYDL  111 (253)
Q Consensus        79 -p~-----------~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l  111 (253)
                       |.           ...+|...+......|..+.|...|.+|++.
T Consensus       419 ~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~  463 (679)
T 4e6h_A          419 DPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRL  463 (679)
T ss_dssp             STTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHT
T ss_pred             cCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence             43           3457777888888889999999999999987

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=97.85  E-value=0.00041  Score=51.01  Aligned_cols=106  Identities=11%  Similarity=-0.046  Sum_probs=90.3

Q ss_pred             CCcccHHHHHHHHHHHHhccCH------HHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHhhCHHHHHHHHHHH
Q psy11461          9 TNNLSDKELKDEGNRYFGLRQY------EEAINCYTRAIIKNPV--------IPSYFTNRALCYLKLKQYVHCCDDCRKA   74 (253)
Q Consensus         9 ~~~~~a~~~~~~g~~~~~~g~~------~~A~~~y~~ai~~~p~--------~~~~~~~~a~~~~~~~~~~~A~~~~~~a   74 (253)
                      ..|.+.+.|.......-+.|+.      +.-++.|++|+..-|.        ...+|...|.. ...++.++|...|+.+
T Consensus         8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a   86 (161)
T 4h7y_A            8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMA   86 (161)
T ss_dssp             --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHH
T ss_pred             eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHH
Confidence            4567788888888888888998      8899999999998774        23466666754 6779999999999999


Q ss_pred             HhhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461         75 LELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQ  115 (253)
Q Consensus        75 l~l~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~  115 (253)
                      +.++....+.|...|+--..+|+...|.+.+.+|+.++|..
T Consensus        87 ~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~  127 (161)
T 4h7y_A           87 RANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP  127 (161)
T ss_dssp             HHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred             HHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence            99988898999999999999999999999999999999875

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=97.83  E-value=0.00014  Score=61.83  Aligned_cols=76  Identities=14%  Similarity=0.130  Sum_probs=69.7

Q ss_pred             HHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhcc
Q psy11461         40 AIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQN  116 (253)
Q Consensus        40 ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~  116 (253)
                      ++..+|.++.++.-+|.++...|++++|+..+++|+.++| +..+|..+|.++...|++++|++.|.+|++++|...
T Consensus       269 a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~  344 (372)
T 3ly7_A          269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN  344 (372)
T ss_dssp             TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred             hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence            3466899999999999999999999999999999999997 467889999999999999999999999999999863

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=97.81  E-value=0.0005  Score=49.43  Aligned_cols=71  Identities=11%  Similarity=0.065  Sum_probs=62.7

Q ss_pred             CCHHHHHHHHHHHHHhhC---HHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhcc
Q psy11461         46 VIPSYFTNRALCYLKLKQ---YVHCCDDCRKALELEPS-LVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQN  116 (253)
Q Consensus        46 ~~~~~~~~~a~~~~~~~~---~~~A~~~~~~al~l~p~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~  116 (253)
                      -++..-++.|.|+.+..+   ...++..+...+..+|. ....+|.+|..++.+|+|++|.++...++++.|++.
T Consensus        38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~  112 (134)
T 3o48_A           38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK  112 (134)
T ss_dssp             SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCH
T ss_pred             CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCH
Confidence            467889999999998775   45789999999998884 578999999999999999999999999999999983

>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B

Probab=97.80  E-value=1.4e-05  Score=55.14  Aligned_cols=33  Identities=27%  Similarity=0.464  Sum_probs=31.4

Q ss_pred             CCCCCCCCCCCCCCCcCcHHHHHHHHHHhhhcC
Q psy11461        216 HFDPVTRVKLSADQLIPNFAMKEVVDNFLQEND  248 (253)
Q Consensus       216 ~~DP~tr~~l~~~~l~pN~~lk~a~~~~l~~n~  248 (253)
                      ..+|+||+|++..+|+||..||++|+.|+.+|+
T Consensus        64 ~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~~~~   96 (100)
T 2kre_A           64 PTDPFNRQTLTESMLEPVPELKEQIQAWMREKQ   96 (100)
T ss_dssp             SBCSSSCCBCCTTSSEECHHHHHHHHHHHHTTT
T ss_pred             CCCCCCCCCCChhhceECHHHHHHHHHHHHHhh
Confidence            479999999999999999999999999999986

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=97.74  E-value=0.00047  Score=49.54  Aligned_cols=80  Identities=8%  Similarity=-0.060  Sum_probs=68.4

Q ss_pred             ccHHHHHHHHHHHHhccCH---HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHH
Q psy11461         12 LSDKELKDEGNRYFGLRQY---EEAINCYTRAIIKNPV-IPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFF   87 (253)
Q Consensus        12 ~~a~~~~~~g~~~~~~g~~---~~A~~~y~~ai~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~   87 (253)
                      ..+.+-|++|.++.+..+.   ..+|..+...+..+|. .-.+++.+|..++++|+|..|.++++.++++.|+|..|...
T Consensus        38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~L  117 (134)
T 3o48_A           38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL  117 (134)
T ss_dssp             SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred             CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHH
Confidence            3567888999999887655   5799999999998884 57899999999999999999999999999999999988765


Q ss_pred             HHHH
Q psy11461         88 LGQA   91 (253)
Q Consensus        88 lg~~   91 (253)
                      ...+
T Consensus       118 k~~I  121 (134)
T 3o48_A          118 KSMV  121 (134)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5433

>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}

Probab=97.70  E-value=1.4e-05  Score=53.41  Aligned_cols=33  Identities=27%  Similarity=0.448  Sum_probs=31.0

Q ss_pred             CCCCCCCCCCCCCCCcCcHHHHHHHHHHhhhcC
Q psy11461        216 HFDPVTRVKLSADQLIPNFAMKEVVDNFLQEND  248 (253)
Q Consensus       216 ~~DP~tr~~l~~~~l~pN~~lk~a~~~~l~~n~  248 (253)
                      ..+|+||++++..+|+||..||++|+.|+.+|+
T Consensus        49 ~~cP~~~~~l~~~~l~pn~~L~~~i~~~~~~~~   81 (85)
T 2kr4_A           49 PTDPFNRQMLTESMLEPVPELKEQIQAWMREKQ   81 (85)
T ss_dssp             SBCTTTCCBCCGGGCEECHHHHHHHHHHHHHHH
T ss_pred             CCCCCCcCCCChHhcchHHHHHHHHHHHHHHhh
Confidence            479999999999999999999999999998874

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=97.67  E-value=0.0022  Score=46.62  Aligned_cols=71  Identities=11%  Similarity=0.061  Sum_probs=63.2

Q ss_pred             CCCHHHHHHHHHHHHHhhC---HHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461         45 PVIPSYFTNRALCYLKLKQ---YVHCCDDCRKALELEPS-LVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQ  115 (253)
Q Consensus        45 p~~~~~~~~~a~~~~~~~~---~~~A~~~~~~al~l~p~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~  115 (253)
                      .-++...+++|.|+.+..+   ..+++..++..+..+|. ....+|.+|..++.+|+|.+|.++....|+..|++
T Consensus        36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n  110 (144)
T 1y8m_A           36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN  110 (144)
T ss_dssp             TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCC
T ss_pred             CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc
Confidence            4578899999999999775   45789999999998884 66789999999999999999999999999999998

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=97.65  E-value=0.00078  Score=49.05  Aligned_cols=80  Identities=8%  Similarity=-0.058  Sum_probs=69.3

Q ss_pred             cccHHHHHHHHHHHHhccCH---HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHH
Q psy11461         11 NLSDKELKDEGNRYFGLRQY---EEAINCYTRAIIKNPV-IPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQF   86 (253)
Q Consensus        11 ~~~a~~~~~~g~~~~~~g~~---~~A~~~y~~ai~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~   86 (253)
                      ......-|++|.++.+...-   ..+|..++..+...|. .-.+++.+|..++++|+|.+|.++++..+++.|+|..|..
T Consensus        36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~  115 (144)
T 1y8m_A           36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA  115 (144)
T ss_dssp             TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred             CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence            45678889999999987765   4799999999998884 5679999999999999999999999999999999988876


Q ss_pred             HHHH
Q psy11461         87 FLGQ   90 (253)
Q Consensus        87 ~lg~   90 (253)
                      ....
T Consensus       116 Lk~~  119 (144)
T 1y8m_A          116 LKSM  119 (144)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5443

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=97.57  E-value=0.0015  Score=60.22  Aligned_cols=108  Identities=10%  Similarity=-0.057  Sum_probs=88.2

Q ss_pred             CcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHh-----------CCC-----------CHHHHHHHHHHHHHhhCHHHH
Q psy11461         10 NNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIK-----------NPV-----------IPSYFTNRALCYLKLKQYVHC   67 (253)
Q Consensus        10 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~-----------~p~-----------~~~~~~~~a~~~~~~~~~~~A   67 (253)
                      .|.....++..+......|+++.|...|.+++..           .|.           .+.+|...+......|..+.|
T Consensus       374 ~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~A  453 (679)
T 4e6h_A          374 IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAAS  453 (679)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHH
Confidence            3556777888999999999999999999999975           253           345788888888899999999


Q ss_pred             HHHHHHHHhh-CCCcHHHHHHHHHHHHHhC-CHHHHHHHHHHHHhhchhccc
Q psy11461         68 CDDCRKALEL-EPSLVKAQFFLGQALHEIN-HYDEAVKHLQRAYDLSREQNL  117 (253)
Q Consensus        68 ~~~~~~al~l-~p~~~~a~~~lg~~~~~~~-~~~~A~~~~~~al~l~p~~~~  117 (253)
                      ...|.+|++. .+.....|...|..-...+ +++.|...|.++++..|+++.
T Consensus       454 R~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~  505 (679)
T 4e6h_A          454 RKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGE  505 (679)
T ss_dssp             HHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchH
Confidence            9999999987 4455677777777666665 489999999999999988744

>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A

Probab=97.42  E-value=5.6e-05  Score=71.00  Aligned_cols=35  Identities=20%  Similarity=0.408  Sum_probs=32.3

Q ss_pred             cCCCCCCCCCCCCCCCCcCcHHHHHHHHHHhhhcC
Q psy11461        214 VGHFDPVTRVKLSADQLIPNFAMKEVVDNFLQEND  248 (253)
Q Consensus       214 ~g~~DP~tr~~l~~~~l~pN~~lk~a~~~~l~~n~  248 (253)
                      .+.+||+||+||+.++++||++||++|++|+.+|.
T Consensus       925 ~~~tdP~Tr~~L~~~~liPN~~Lk~~I~~w~~~~~  959 (968)
T 3m62_A          925 SDSTDPFNRMPLKLEDVTPNEELRQKILCFKKQKK  959 (968)
T ss_dssp             TCCBCTTTCCBCCGGGCEECHHHHHHHHHHHHHHH
T ss_pred             cCCCCCCCCCCCCcccccccHHHHHHHHHHHHHHH
Confidence            45699999999999999999999999999998874

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=97.19  E-value=0.0026  Score=47.58  Aligned_cols=80  Identities=19%  Similarity=0.136  Sum_probs=63.0

Q ss_pred             ccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC------CC-------------------CHHHHHHHHHHHHHhhCHHH
Q psy11461         12 LSDKELKDEGNRYFGLRQYEEAINCYTRAIIKN------PV-------------------IPSYFTNRALCYLKLKQYVH   66 (253)
Q Consensus        12 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~------p~-------------------~~~~~~~~a~~~~~~~~~~~   66 (253)
                      ..++.+..+|+.+|..|+|..|...|++|+...      +.                   +..+.+..|.||.+++++.+
T Consensus        61 ~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~  140 (167)
T 3ffl_A           61 QKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKD  140 (167)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHH
Confidence            456789999999999999999999999998661      11                   12578899999999999999


Q ss_pred             HHHHHHHHHhhCCCcHHHHHHHHHHH
Q psy11461         67 CCDDCRKALELEPSLVKAQFFLGQAL   92 (253)
Q Consensus        67 A~~~~~~al~l~p~~~~a~~~lg~~~   92 (253)
                      |+..++.+- ....+++.-..||..|
T Consensus       141 Ai~~Le~Ip-~k~Rt~kvnm~LakLy  165 (167)
T 3ffl_A          141 AIAILDGIP-SRQRTPKINMLLANLY  165 (167)
T ss_dssp             HHHHHHTSC-GGGCCHHHHHHHHHHC
T ss_pred             HHHHHhcCC-chhcCHHHHHHHHHHh
Confidence            999886542 2235777777777665

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=96.97  E-value=0.017  Score=49.55  Aligned_cols=96  Identities=13%  Similarity=-0.032  Sum_probs=79.0

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHhCCC--------C--H------------HHHHHHHHHHHHhhCHHHHHHHHHH
Q psy11461         16 ELKDEGNRYFGLRQYEEAINCYTRAIIKNPV--------I--P------------SYFTNRALCYLKLKQYVHCCDDCRK   73 (253)
Q Consensus        16 ~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~--------~--~------------~~~~~~a~~~~~~~~~~~A~~~~~~   73 (253)
                      .+...|......|+...|...+.+|+.+...        .  .            .+...++.++...|++.+++..+..
T Consensus       117 ~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~  196 (388)
T 2ff4_A          117 AEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEA  196 (388)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            3444555666789999999999999988421        1  1            2344577888899999999999999


Q ss_pred             HHhhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Q psy11461         74 ALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDL  111 (253)
Q Consensus        74 al~l~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l  111 (253)
                      ++..+|-+-.++..+-.++...|+..+|++.|+++.+.
T Consensus       197 ~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~  234 (388)
T 2ff4_A          197 LTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTT  234 (388)
T ss_dssp             HHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999887653

>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2

Probab=96.97  E-value=0.00047  Score=44.92  Aligned_cols=35  Identities=20%  Similarity=0.331  Sum_probs=32.5

Q ss_pred             CCCCCCCCCCCCCCCCcCcHHHHHHHHHHhhhcCc
Q psy11461        215 GHFDPVTRVKLSADQLIPNFAMKEVVDNFLQENDW  249 (253)
Q Consensus       215 g~~DP~tr~~l~~~~l~pN~~lk~a~~~~l~~n~w  249 (253)
                      ....|++|.+++...++||..|++.|+.|+.+|+.
T Consensus        43 ~~~CP~C~~~~~~~~l~~n~~l~~~i~~~~~~~~~   77 (78)
T 1t1h_A           43 HKTCPKSQETLLHAGLTPNYVLKSLIALWCESNGI   77 (78)
T ss_dssp             CCBCTTTCCBCSSCCCEECTTTHHHHHHHHHHSCC
T ss_pred             cCCCCCCcCCCChhhCccCHHHHHHHHHHHHHcCC
Confidence            45799999999999999999999999999999985

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=96.88  E-value=0.027  Score=45.49  Aligned_cols=63  Identities=13%  Similarity=0.098  Sum_probs=58.8

Q ss_pred             HHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHH
Q psy11461         22 NRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKA   84 (253)
Q Consensus        22 ~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a   84 (253)
                      ..+++.|+.++|+......|+.+|.++.....+...+.-.|+|+.|..-++.+.+++|.....
T Consensus         5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~   67 (273)
T 1zbp_A            5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPG   67 (273)
T ss_dssp             HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHH
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHH
Confidence            467899999999999999999999999999999999999999999999999999999986543

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=96.82  E-value=0.046  Score=48.36  Aligned_cols=103  Identities=10%  Similarity=-0.113  Sum_probs=65.7

Q ss_pred             cccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH---------------------------------
Q psy11461         11 NLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALC---------------------------------   57 (253)
Q Consensus        11 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~---------------------------------   57 (253)
                      |..+..|...+..+...|+.+.|...|.+|+.. |.+..++...+..                                 
T Consensus       210 p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l  288 (493)
T 2uy1_A          210 YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLL  288 (493)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHH
Confidence            455788888888888899999999999999988 8876655544332                                 


Q ss_pred             -------HHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhC-CHHHHHHHHHHHHhhchhc
Q psy11461         58 -------YLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEIN-HYDEAVKHLQRAYDLSREQ  115 (253)
Q Consensus        58 -------~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~~-~~~~A~~~~~~al~l~p~~  115 (253)
                             ..+.+..+.|...|.+| ...+.....|...|..-...+ +.+.|...|..+++..|+.
T Consensus       289 w~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~  353 (493)
T 2uy1_A          289 RINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDS  353 (493)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCC
Confidence                   11244556666666666 322223444444444444444 4666667777666665554

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=96.56  E-value=0.13  Score=45.68  Aligned_cols=100  Identities=12%  Similarity=0.018  Sum_probs=78.3

Q ss_pred             cHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCC-CcHHHHHHHHH
Q psy11461         13 SDKELKDEGNRYFGLRQYEEAINCYTRAIIKN-PVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEP-SLVKAQFFLGQ   90 (253)
Q Consensus        13 ~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p-~~~~a~~~lg~   90 (253)
                      +...|..+-..+.+.|++++|...|.+..... .-+...|..+-.+|.+.|++++|...+.+.....- -+...|..+-.
T Consensus       104 d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~  183 (501)
T 4g26_A          104 NEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLK  183 (501)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence            45567778888888999999999998877652 33677788888888899999999999988876432 25567777888


Q ss_pred             HHHHhCCHHHHHHHHHHHHhhc
Q psy11461         91 ALHEINHYDEAVKHLQRAYDLS  112 (253)
Q Consensus        91 ~~~~~~~~~~A~~~~~~al~l~  112 (253)
                      ++...|+.++|.+.|++..+..
T Consensus       184 ~~~~~g~~d~A~~ll~~Mr~~g  205 (501)
T 4g26_A          184 VSMDTKNADKVYKTLQRLRDLV  205 (501)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHT
T ss_pred             HHhhCCCHHHHHHHHHHHHHhC
Confidence            8889999999999888876543

>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.55  E-value=0.0012  Score=44.69  Aligned_cols=34  Identities=15%  Similarity=0.321  Sum_probs=30.7

Q ss_pred             CCCCCCCCCC---CCCCCCcCcHHHHHHHHHHhhhcC
Q psy11461        215 GHFDPVTRVK---LSADQLIPNFAMKEVVDNFLQEND  248 (253)
Q Consensus       215 g~~DP~tr~~---l~~~~l~pN~~lk~a~~~~l~~n~  248 (253)
                      +..+|+|+.+   ++..+|+||..|+..|+.|+.+++
T Consensus        48 ~~~CP~tgc~~~~l~~~~L~pn~~L~~~I~~~~~~~~   84 (94)
T 2yu4_A           48 KAYCPQIGCSHTDIRKSDLIQDEALRRAIENHNKKRH   84 (94)
T ss_dssp             CBCCCSTTCCCCCBCGGGEEECHHHHHHHHHHHTTCC
T ss_pred             CCCCCcCcCcccccCHhhCcCCHHHHHHHHHHHHHhc
Confidence            4589998877   999999999999999999998875

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=96.36  E-value=0.011  Score=54.97  Aligned_cols=59  Identities=12%  Similarity=0.135  Sum_probs=52.7

Q ss_pred             HHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q psy11461         50 YFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRA  108 (253)
Q Consensus        50 ~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~a  108 (253)
                      ++..-+.-+...|+|+-|+..+++|+.+.|.....|+.|+.||..+|+|+.|+-.++.+
T Consensus       339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          339 LLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            45555777778999999999999999999999999999999999999999999777665

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=96.29  E-value=0.013  Score=54.54  Aligned_cols=61  Identities=16%  Similarity=0.084  Sum_probs=56.1

Q ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHH
Q psy11461         14 DKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKA   74 (253)
Q Consensus        14 a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a   74 (253)
                      +..+..++..+..+|+|+-|+.+.++|+..-|.....|..||.||..+|+|+.|+-.+..+
T Consensus       337 ~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          337 SDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             hHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            4467778999999999999999999999999999999999999999999999999877655

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=96.03  E-value=0.063  Score=47.51  Aligned_cols=79  Identities=15%  Similarity=0.010  Sum_probs=70.9

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q psy11461         16 ELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHE   94 (253)
Q Consensus        16 ~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~   94 (253)
                      .+..+|....-...+..|..+|.+|+.+.|.+...|+.+|.+....|+.-+|+-+|.+++....-.+.+.-++...+-.
T Consensus       154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~  232 (497)
T 1ya0_A          154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK  232 (497)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred             HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence            5667899888889999999999999999999999999999999999999999999999998877788888888877765

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=95.83  E-value=0.05  Score=39.97  Aligned_cols=70  Identities=17%  Similarity=0.088  Sum_probs=55.7

Q ss_pred             HhCCCCHHHHHHHHHHHHHhhCH------HHHHHHHHHHHhhCCC--------cHHHHHHHHHHHHHhCCHHHHHHHHHH
Q psy11461         42 IKNPVIPSYFTNRALCYLKLKQY------VHCCDDCRKALELEPS--------LVKAQFFLGQALHEINHYDEAVKHLQR  107 (253)
Q Consensus        42 ~~~p~~~~~~~~~a~~~~~~~~~------~~A~~~~~~al~l~p~--------~~~a~~~lg~~~~~~~~~~~A~~~~~~  107 (253)
                      -+.|.+++.|.+.....-+.|+.      +..+..|++|+..-|-        .+..|.+.|.. ...++.++|.+.|+.
T Consensus         7 ~~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~   85 (161)
T 4h7y_A            7 MMMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQM   85 (161)
T ss_dssp             ---CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHH
T ss_pred             eeCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHH
Confidence            46799999999999999999999      9999999999987664        23445555544 567999999999999


Q ss_pred             HHhhc
Q psy11461        108 AYDLS  112 (253)
Q Consensus       108 al~l~  112 (253)
                      ++.++
T Consensus        86 a~~~h   90 (161)
T 4h7y_A           86 ARANC   90 (161)
T ss_dssp             HHHHC
T ss_pred             HHHHh
Confidence            99983

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=95.83  E-value=0.12  Score=45.71  Aligned_cols=94  Identities=15%  Similarity=-0.026  Sum_probs=79.1

Q ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh-CHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q psy11461         14 DKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLK-QYVHCCDDCRKALELEPSLVKAQFFLGQAL   92 (253)
Q Consensus        14 a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~-~~~~A~~~~~~al~l~p~~~~a~~~lg~~~   92 (253)
                      ...|...+....+.+..+.|...|.+| ...+.....|...|..-...+ +++.|...++.+++..|+++..+...+...
T Consensus       286 ~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e  364 (493)
T 2uy1_A          286 DLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFL  364 (493)
T ss_dssp             HHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence            456778888888889999999999999 433345677877787777777 599999999999999999988888788888


Q ss_pred             HHhCCHHHHHHHHHHH
Q psy11461         93 HEINHYDEAVKHLQRA  108 (253)
Q Consensus        93 ~~~~~~~~A~~~~~~a  108 (253)
                      ...|+.+.|...|.++
T Consensus       365 ~~~~~~~~aR~l~er~  380 (493)
T 2uy1_A          365 LRIGDEENARALFKRL  380 (493)
T ss_dssp             HHHTCHHHHHHHHHHS
T ss_pred             HHcCCHHHHHHHHHHH
Confidence            8899999999999987

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=95.81  E-value=0.28  Score=36.85  Aligned_cols=92  Identities=20%  Similarity=0.174  Sum_probs=71.5

Q ss_pred             HHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHh--hC---------------CC
Q psy11461         18 KDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALE--LE---------------PS   80 (253)
Q Consensus        18 ~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~--l~---------------p~   80 (253)
                      ..++..++-.|.|..|+-.+.     .-+.....+-.+.||.++++|..|+.+++..+.  .+               |.
T Consensus        37 lL~~I~LyyngEY~R~Lf~L~-----~lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~  111 (242)
T 3kae_A           37 MLMSIVLYLNGEYTRALFHLH-----KLNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPG  111 (242)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHH-----TCCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTT
T ss_pred             hhhhhhhhhcchHhHHHHHHH-----hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccc
Confidence            346777888888887776554     335566777789999999999999999999983  22               33


Q ss_pred             cHHH-HHHHHHHHHHhCCHHHHHHHHHHHHhhchh
Q psy11461         81 LVKA-QFFLGQALHEINHYDEAVKHLQRAYDLSRE  114 (253)
Q Consensus        81 ~~~a-~~~lg~~~~~~~~~~~A~~~~~~al~l~p~  114 (253)
                      +... +..+|.++...|+-++|+.++.......|-
T Consensus       112 DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~l  146 (242)
T 3kae_A          112 DEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFL  146 (242)
T ss_dssp             CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred             hHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccc
Confidence            4343 455799999999999999999999887763

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=94.93  E-value=0.49  Score=40.48  Aligned_cols=93  Identities=12%  Similarity=0.034  Sum_probs=73.3

Q ss_pred             HHHHHHHhccCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhC---CCcH----HHH
Q psy11461         19 DEGNRYFGLRQYEEAINCYTRAIIKNPV------IPSYFTNRALCYLKLKQYVHCCDDCRKALELE---PSLV----KAQ   85 (253)
Q Consensus        19 ~~g~~~~~~g~~~~A~~~y~~ai~~~p~------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~---p~~~----~a~   85 (253)
                      .+|..|+..|+|.+|...+.+....-..      ....+.....+|..++++.++...+.+|....   +..+    ...
T Consensus       104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~  183 (394)
T 3txn_A          104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD  183 (394)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence            6899999999999999999998875221      23467778889999999999999998886542   1222    334


Q ss_pred             HHHHHHHH-HhCCHHHHHHHHHHHHhh
Q psy11461         86 FFLGQALH-EINHYDEAVKHLQRAYDL  111 (253)
Q Consensus        86 ~~lg~~~~-~~~~~~~A~~~~~~al~l  111 (253)
                      ..-|..+. ..++|..|...|-.+++-
T Consensus       184 ~~~Gi~~l~~~rdyk~A~~~F~eaf~~  210 (394)
T 3txn_A          184 LQSGILHAADERDFKTAFSYFYEAFEG  210 (394)
T ss_dssp             HHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred             HHhhHHHHHhccCHHHHHHHHHHHHhc
Confidence            55688888 899999999999999754

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=94.75  E-value=0.38  Score=38.77  Aligned_cols=59  Identities=15%  Similarity=0.061  Sum_probs=56.0

Q ss_pred             HHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461         57 CYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQ  115 (253)
Q Consensus        57 ~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~  115 (253)
                      .+++.|..++|+..+...|+-+|.+......+.+.++-.|+++.|.+-++.+.+++|+.
T Consensus         6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~   64 (273)
T 1zbp_A            6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY   64 (273)
T ss_dssp             HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGG
T ss_pred             HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchh
Confidence            45678999999999999999999999999999999999999999999999999999986

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=94.66  E-value=0.14  Score=45.24  Aligned_cols=64  Identities=13%  Similarity=-0.082  Sum_probs=56.8

Q ss_pred             HHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhch
Q psy11461         50 YFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSR  113 (253)
Q Consensus        50 ~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p  113 (253)
                      ++..+|........+..|..+|.+|+.+.|++..++..+|.+....|+.-+|+-+|.+++....
T Consensus       154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~  217 (497)
T 1ya0_A          154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKF  217 (497)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSB
T ss_pred             HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCC
Confidence            4556777777778899999999999999999999999999999999999999999999987543

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=94.61  E-value=0.57  Score=35.32  Aligned_cols=48  Identities=4%  Similarity=-0.178  Sum_probs=33.0

Q ss_pred             HHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHH
Q psy11461         23 RYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKAL   75 (253)
Q Consensus        23 ~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al   75 (253)
                      .....|+++.|.+.....     ++...|..+|...+..|+++-|+.+|.++-
T Consensus        14 LAL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~   61 (177)
T 3mkq_B           14 LALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQH   61 (177)
T ss_dssp             HHHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred             HHHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhC
Confidence            345667777777765543     456677777777777777777777776653

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.54  E-value=0.15  Score=44.28  Aligned_cols=99  Identities=10%  Similarity=0.047  Sum_probs=78.5

Q ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhC---CC-c--HHH
Q psy11461         14 DKELKDEGNRYFGLRQYEEAINCYTRAIIKNPV---IPSYFTNRALCYLKLKQYVHCCDDCRKALELE---PS-L--VKA   84 (253)
Q Consensus        14 a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~---p~-~--~~a   84 (253)
                      ...+..+|..++..|+++.|.++|.++......   -..++.....++...++|..+...+.++-.+.   ++ .  .+.
T Consensus       131 ~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~l  210 (429)
T 4b4t_R          131 AQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRY  210 (429)
T ss_dssp             SSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHH
Confidence            345678999999999999999999998876433   35688888899999999999999999986652   21 1  133


Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHhhc
Q psy11461         85 QFFLGQALHEINHYDEAVKHLQRAYDLS  112 (253)
Q Consensus        85 ~~~lg~~~~~~~~~~~A~~~~~~al~l~  112 (253)
                      ....|..+...++|.+|...|..++...
T Consensus       211 k~~~gl~~l~~r~f~~Aa~~f~e~~~t~  238 (429)
T 4b4t_R          211 KTYYGIHCLAVRNFKEAAKLLVDSLATF  238 (429)
T ss_dssp             HHHHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHhChHHHHHHHHHHHhccC
Confidence            4556777888999999999998887543

>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A

Probab=94.41  E-value=0.015  Score=35.78  Aligned_cols=22  Identities=27%  Similarity=0.465  Sum_probs=18.7

Q ss_pred             cCCCCCCCCCCCCCCCCcCcHHH
Q psy11461        214 VGHFDPVTRVKLSADQLIPNFAM  236 (253)
Q Consensus       214 ~g~~DP~tr~~l~~~~l~pN~~l  236 (253)
                      +| .||+|++||+.++|+||..-
T Consensus        38 ~~-~cP~t~~~L~~~~Lip~~~~   59 (61)
T 2bay_A           38 TG-NDPITNEPLSIEEIVEIVPS   59 (61)
T ss_dssp             HS-BCTTTCCBCCGGGCEECCCC
T ss_pred             CC-CCcCCcCCCChhhcEECccC
Confidence            45 49999999999999999643

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=93.79  E-value=3.3  Score=36.47  Aligned_cols=85  Identities=9%  Similarity=0.002  Sum_probs=70.6

Q ss_pred             cCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhCCHHHHHHHH
Q psy11461         28 RQYEEAINCYTRAIIKN-PVIPSYFTNRALCYLKLKQYVHCCDDCRKALELE-PSLVKAQFFLGQALHEINHYDEAVKHL  105 (253)
Q Consensus        28 g~~~~A~~~y~~ai~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~~~~~~A~~~~  105 (253)
                      +..+.|.+.|.+..... +-+...|+.+-.+|.+.|++++|...+++..... .-+...|..+-.++...|+.++|.+.|
T Consensus        84 ~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~  163 (501)
T 4g26_A           84 PGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVD  163 (501)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHH
Confidence            44788999999877653 3367889999999999999999999999987653 236778888888999999999999999


Q ss_pred             HHHHhhc
Q psy11461        106 QRAYDLS  112 (253)
Q Consensus       106 ~~al~l~  112 (253)
                      ....+.+
T Consensus       164 ~~M~~~G  170 (501)
T 4g26_A          164 AHMVESE  170 (501)
T ss_dssp             HHHHHTT
T ss_pred             HHHHhcC
Confidence            9987653

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=93.47  E-value=0.37  Score=41.12  Aligned_cols=61  Identities=8%  Similarity=0.064  Sum_probs=55.2

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHh
Q psy11461         16 ELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALE   76 (253)
Q Consensus        16 ~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~   76 (253)
                      +...++..+...|++.+|+..+..++..+|-+-.++..+-.++...|+..+|+..|+++-.
T Consensus       173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~  233 (388)
T 2ff4_A          173 AHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT  233 (388)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            4456778888999999999999999999999999999999999999999999999987654

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=93.29  E-value=0.22  Score=44.09  Aligned_cols=105  Identities=13%  Similarity=-0.018  Sum_probs=61.2

Q ss_pred             cccHHHHHHHHHHHHhccCHHHHHH----------HHHHHHHh-----CC-CCHHHHHHHHHHHHHhhCHHHHHHHHHHH
Q psy11461         11 NLSDKELKDEGNRYFGLRQYEEAIN----------CYTRAIIK-----NP-VIPSYFTNRALCYLKLKQYVHCCDDCRKA   74 (253)
Q Consensus        11 ~~~a~~~~~~g~~~~~~g~~~~A~~----------~y~~ai~~-----~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a   74 (253)
                      .-.+..||..+..+-..|+......          .+-.++..     |+ ..+.+++.+-..|+..+.|+.|.....++
T Consensus       178 ~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~  257 (523)
T 4b4t_S          178 LINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLKHDNETKAMLINLILRDFLNNGEVDSASDFISKL  257 (523)
T ss_dssp             -------------------------CHHHHHHHHTHHHHHHHHCCSCSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcC
Confidence            3455666666666666666554321          22222222     22 23567888899999999999999999999


Q ss_pred             HhhCCCc-------HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhccc
Q psy11461         75 LELEPSL-------VKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNL  117 (253)
Q Consensus        75 l~l~p~~-------~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~~  117 (253)
                      .  .|.+       ...+|++|.++...++|.+|.+++..|++.+|.+..
T Consensus       258 ~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~~  305 (523)
T 4b4t_S          258 E--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNSK  305 (523)
T ss_dssp             C--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSSS
T ss_pred             c--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchh
Confidence            5  3322       456788999999999999999999999999987643

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=92.71  E-value=2.4  Score=31.85  Aligned_cols=69  Identities=9%  Similarity=-0.081  Sum_probs=56.1

Q ss_pred             ccHHHHHHHHHHHHhccCHHHHHHHHHHHHHh-----------------CCCCHH-HHHHHHHHHHHhhCHHHHHHHHHH
Q psy11461         12 LSDKELKDEGNRYFGLRQYEEAINCYTRAIIK-----------------NPVIPS-YFTNRALCYLKLKQYVHCCDDCRK   73 (253)
Q Consensus        12 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~-----------------~p~~~~-~~~~~a~~~~~~~~~~~A~~~~~~   73 (253)
                      ..+.+.+-.+-++.+.++|..|+.+++..+.-                 +|.+-. ++..+|..+.+.|+-++|+..+..
T Consensus        60 NT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~  139 (242)
T 3kae_A           60 NTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVR  139 (242)
T ss_dssp             CBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhh
Confidence            45677788889999999999999999999832                 334444 466679999999999999999998


Q ss_pred             HHhhCCC
Q psy11461         74 ALELEPS   80 (253)
Q Consensus        74 al~l~p~   80 (253)
                      ....+|-
T Consensus       140 Sf~~~~l  146 (242)
T 3kae_A          140 SFGKSFL  146 (242)
T ss_dssp             HHHHCCC
T ss_pred             hcCCccc
Confidence            8877653

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=92.66  E-value=3.1  Score=36.11  Aligned_cols=100  Identities=15%  Similarity=0.089  Sum_probs=78.0

Q ss_pred             cHHHHHHHHHHHHhccCHHHHHHHHHHHHHh-CCC-----CHHHHHHHHHHHHHhhCHHHHHHHHHHHHh---hCCCc--
Q psy11461         13 SDKELKDEGNRYFGLRQYEEAINCYTRAIIK-NPV-----IPSYFTNRALCYLKLKQYVHCCDDCRKALE---LEPSL--   81 (253)
Q Consensus        13 ~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~-~p~-----~~~~~~~~a~~~~~~~~~~~A~~~~~~al~---l~p~~--   81 (253)
                      .+.....++..+...|+|.+|...+.....- ...     -..++..-...|...++|..|...++++-.   -.+..  
T Consensus       136 rarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~  215 (445)
T 4b4t_P          136 RARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYES  215 (445)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHH
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHH
Confidence            5667788999999999999999999887543 111     135777888999999999999999998742   12222  


Q ss_pred             --HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhc
Q psy11461         82 --VKAQFFLGQALHEINHYDEAVKHLQRAYDLS  112 (253)
Q Consensus        82 --~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~  112 (253)
                        ...+...|..+...++|.+|..+|..++...
T Consensus       216 lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~  248 (445)
T 4b4t_P          216 LKLEYYNLLVKISLHKREYLEVAQYLQEIYQTD  248 (445)
T ss_dssp             HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcc
Confidence              2345667888999999999999999998753

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=92.52  E-value=3.3  Score=39.96  Aligned_cols=97  Identities=6%  Similarity=-0.117  Sum_probs=75.7

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhC-CCcHHHHHHHH
Q psy11461         15 KELKDEGNRYFGLRQYEEAINCYTRAIIK----NPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELE-PSLVKAQFFLG   89 (253)
Q Consensus        15 ~~~~~~g~~~~~~g~~~~A~~~y~~ai~~----~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~-p~~~~a~~~lg   89 (253)
                      ..+..+-+.|.+.|+.++|...+......    ..-+...|+.+-..|.+.|++++|...+++..... .-|...|..+-
T Consensus       128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI  207 (1134)
T 3spa_A          128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL  207 (1134)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence            35778888999999999999999765432    34567889999999999999999999999987643 22666777777


Q ss_pred             HHHHHhCC-HHHHHHHHHHHHhh
Q psy11461         90 QALHEINH-YDEAVKHLQRAYDL  111 (253)
Q Consensus        90 ~~~~~~~~-~~~A~~~~~~al~l  111 (253)
                      .++...|+ .++|.+.|+...+.
T Consensus       208 ~glcK~G~~~e~A~~Ll~EM~~k  230 (1134)
T 3spa_A          208 QCMGRQDQDAGTIERCLEQMSQE  230 (1134)
T ss_dssp             HHHHHHTCCHHHHHHHHHHHHHH
T ss_pred             HHHHhCCCcHHHHHHHHHHHHHc
Confidence            78888887 46787777665543

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=92.26  E-value=0.39  Score=46.98  Aligned_cols=94  Identities=10%  Similarity=0.103  Sum_probs=73.3

Q ss_pred             cHHHHHHHHHHHHhccCHHHHHHHHHHHHHh-----------------------CCCCHHHHHHHHHHHHHhhCHHHHHH
Q psy11461         13 SDKELKDEGNRYFGLRQYEEAINCYTRAIIK-----------------------NPVIPSYFTNRALCYLKLKQYVHCCD   69 (253)
Q Consensus        13 ~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~-----------------------~p~~~~~~~~~a~~~~~~~~~~~A~~   69 (253)
                      ++..-+.+|.+++..|++++|..+|.+|...                       ....+.+|......+.+.+.++.+++
T Consensus       841 ~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~  920 (1139)
T 4fhn_B          841 DPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALE  920 (1139)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHH
T ss_pred             CcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHH
Confidence            4455688999999999999999999887321                       11234678888888889999999999


Q ss_pred             HHHHHHhhCCC-cH----HHHHHHHHHHHHhCCHHHHHHHHH
Q psy11461         70 DCRKALELEPS-LV----KAQFFLGQALHEINHYDEAVKHLQ  106 (253)
Q Consensus        70 ~~~~al~l~p~-~~----~a~~~lg~~~~~~~~~~~A~~~~~  106 (253)
                      ..+.|+...+. +.    ..|.++-..+..+|+|++|...+.
T Consensus       921 fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~  962 (1139)
T 4fhn_B          921 FSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALM  962 (1139)
T ss_dssp             HHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHH
T ss_pred             HHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHH
Confidence            99999986543 22    246777888999999999977664

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}

Probab=92.24  E-value=0.11  Score=34.45  Aligned_cols=35  Identities=31%  Similarity=0.461  Sum_probs=31.5

Q ss_pred             CCCCCCCCCC-CCCCCcCcHHHHHHHHHHhhhcCcc
Q psy11461        216 HFDPVTRVKL-SADQLIPNFAMKEVVDNFLQENDWA  250 (253)
Q Consensus       216 ~~DP~tr~~l-~~~~l~pN~~lk~a~~~~l~~n~wa  250 (253)
                      ..-|+.|.++ ....+.||..|++.|+.|...+++.
T Consensus        51 ~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~~~~~~~   86 (92)
T 3ztg_A           51 HTCPTCHQNDVSPDALIANKFLRQAVNNFKNETGYT   86 (92)
T ss_dssp             CCCTTTCCSSCCTTSCEECHHHHHHHHHHHHHHTCC
T ss_pred             CcCcCCCCcCCCccccCcCHHHHHHHHHHHHHHhHH
Confidence            4689999997 6789999999999999999998875

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=91.33  E-value=2  Score=39.48  Aligned_cols=46  Identities=11%  Similarity=0.006  Sum_probs=26.4

Q ss_pred             HHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHH
Q psy11461         24 YFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKA   74 (253)
Q Consensus        24 ~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a   74 (253)
                      +...|+++.|.+.....   +  +...|.++|..+.+.++++.|+.+|.++
T Consensus       662 ~l~~~~~~~A~~~~~~~---~--~~~~W~~la~~al~~~~~~~A~~~y~~~  707 (814)
T 3mkq_A          662 ALKVGQLTLARDLLTDE---S--AEMKWRALGDASLQRFNFKLAIEAFTNA  707 (814)
T ss_dssp             HHHHTCHHHHHHHHTTC---C--CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hhhcCCHHHHHHHHHhh---C--cHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence            44556666666654432   2  1345666666666666666666666553

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=91.29  E-value=1.3  Score=40.90  Aligned_cols=75  Identities=21%  Similarity=0.079  Sum_probs=54.8

Q ss_pred             HHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhCC
Q psy11461         18 KDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINH   97 (253)
Q Consensus        18 ~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~~~   97 (253)
                      ......+-..|.++.|+...+        ++...+   ...+..|+++.|.+.++     ..++...|..+|..+...++
T Consensus       633 ~~~~~~l~~~~~~~~a~~~~~--------~~~~~f---~~~l~~~~~~~A~~~~~-----~~~~~~~W~~la~~al~~~~  696 (814)
T 3mkq_A          633 TKIARFLEGQEYYEEALNISP--------DQDQKF---ELALKVGQLTLARDLLT-----DESAEMKWRALGDASLQRFN  696 (814)
T ss_dssp             HHHHHHHHHTTCHHHHHHHCC--------CHHHHH---HHHHHHTCHHHHHHHHT-----TCCCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHhCCChHHheecCC--------Ccchhe---ehhhhcCCHHHHHHHHH-----hhCcHhHHHHHHHHHHHcCC
Confidence            445556667788787776552        233333   34467899999988763     23677899999999999999


Q ss_pred             HHHHHHHHHHH
Q psy11461         98 YDEAVKHLQRA  108 (253)
Q Consensus        98 ~~~A~~~~~~a  108 (253)
                      ++.|+.+|.++
T Consensus       697 ~~~A~~~y~~~  707 (814)
T 3mkq_A          697 FKLAIEAFTNA  707 (814)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHc
Confidence            99999999885

>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1

Probab=90.91  E-value=0.39  Score=31.77  Aligned_cols=36  Identities=22%  Similarity=0.349  Sum_probs=22.6

Q ss_pred             CCCCCcccHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q psy11461          6 NFTTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAI   41 (253)
Q Consensus         6 ~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai   41 (253)
                      |....-..|..+-..+..+.+.|+|++||++..+|.
T Consensus         7 ~~~spLn~AH~~~RrAe~ll~~gkydeAIech~kAa   42 (97)
T 2crb_A            7 GMEGPLNLAHQQSRRADRLLAAGKYEEAISCHRKAT   42 (97)
T ss_dssp             CCTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             cccchhhhhhHhhhHHHHHHhcCCHHHHHHHHHHHH
Confidence            333334456666667777777777777777666654

>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}

Probab=88.90  E-value=8.2  Score=32.10  Aligned_cols=92  Identities=15%  Similarity=0.115  Sum_probs=53.1

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHh---C----------------------CCCHHHHHHHHHHHHHhhC------
Q psy11461         15 KELKDEGNRYFGLRQYEEAINCYTRAIIK---N----------------------PVIPSYFTNRALCYLKLKQ------   63 (253)
Q Consensus        15 ~~~~~~g~~~~~~g~~~~A~~~y~~ai~~---~----------------------p~~~~~~~~~a~~~~~~~~------   63 (253)
                      +.+..+++.|.++++|++|++.+......   .                      |-+......+..++.....      
T Consensus        36 Q~~RTi~~Ry~~~k~y~eAidLL~~GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~  115 (336)
T 3lpz_A           36 QETRLVAARYSKQGNWAAAVDILASVSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRK  115 (336)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHH
T ss_pred             HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHH
Confidence            45667888888999999999875443322   1                      1111222222222222211      


Q ss_pred             --HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhCCHHHHHHHHH
Q psy11461         64 --YVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQ  106 (253)
Q Consensus        64 --~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~~~~~~A~~~~~  106 (253)
                        ..+|+.|..+.-...-.++..+..+|..++..+++.+|...|-
T Consensus       116 ~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i  160 (336)
T 3lpz_A          116 RFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV  160 (336)
T ss_dssp             HHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred             HHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence              2233333333111122367788999999999999999988874

>2kkx_A Uncharacterized protein ECS2156; methods development, U-box domain, structural genomics, PSI- protein structure initiative; NMR {Escherichia coli} PDB: 2kky_A

Probab=88.60  E-value=0.17  Score=33.93  Aligned_cols=18  Identities=28%  Similarity=0.458  Sum_probs=15.3

Q ss_pred             cCCCCCCCCCCCCCCCCc
Q psy11461        214 VGHFDPVTRVKLSADQLI  231 (253)
Q Consensus       214 ~g~~DP~tr~~l~~~~l~  231 (253)
                      -|..+|+||||+++++++
T Consensus        66 ~~~~HPLSREpit~sMIv   83 (102)
T 2kkx_A           66 EGLPHPLTREPITASIIV   83 (102)
T ss_dssp             HTCCCTTTCCCCCTTTEE
T ss_pred             cCCCCCCccCCCCHhhEe
Confidence            456799999999999875

>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*

Probab=87.49  E-value=2.8  Score=38.06  Aligned_cols=90  Identities=14%  Similarity=0.033  Sum_probs=62.3

Q ss_pred             HHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhCCHH
Q psy11461         20 EGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYD   99 (253)
Q Consensus        20 ~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~~~~~   99 (253)
                      +|..++..+...++...+.+..... .+....--++..-++.|+|..|..++.+.-.-.....+..|.+|.++..+|+.+
T Consensus       258 ia~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~  336 (618)
T 1qsa_A          258 VAWRLMGNDVTDEQAKWRDDAIMRS-QSTSLIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREA  336 (618)
T ss_dssp             HHHTSCSTTCCHHHHHHHHHHHHTC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHcCCChHHHHHHHhccccC-CChHHHHHHHHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHH
Confidence            3434444453445566666655433 333333344444557799999999998765544456888999999999999999


Q ss_pred             HHHHHHHHHHh
Q psy11461        100 EAVKHLQRAYD  110 (253)
Q Consensus       100 ~A~~~~~~al~  110 (253)
                      +|...|.++..
T Consensus       337 ~a~~~~~~~a~  347 (618)
T 1qsa_A          337 EAKEILHQLMQ  347 (618)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHhc
Confidence            99999998875

>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}

Probab=87.18  E-value=2.8  Score=36.51  Aligned_cols=88  Identities=8%  Similarity=0.081  Sum_probs=63.2

Q ss_pred             cCHHHHHHHHHHHHHhCCC-------CH---------HHHHHHHHHHHHhhCHHHHHHHHHHHHhhC--------CC--c
Q psy11461         28 RQYEEAINCYTRAIIKNPV-------IP---------SYFTNRALCYLKLKQYVHCCDDCRKALELE--------PS--L   81 (253)
Q Consensus        28 g~~~~A~~~y~~ai~~~p~-------~~---------~~~~~~a~~~~~~~~~~~A~~~~~~al~l~--------p~--~   81 (253)
                      ...+.|.....++....-.       ..         .+..++-.+|+++++..-|...++..-...        |.  -
T Consensus       140 ~~le~~a~~i~k~F~~cl~Dr~~~~~~s~p~kk~~~l~l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~  219 (455)
T 3t5v_B          140 QFLSHISSILSRLFNSIKPPRGNASSTNIPGKQRILLYLVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQ  219 (455)
T ss_dssp             HHHHHHHHHHHHHHHHCCCC----CCSSCCHHHHHHHHHHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHH
T ss_pred             hHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccce
Confidence            3446667777777765211       10         235567789999999988888775442222        21  2


Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHhh-chhc
Q psy11461         82 VKAQFFLGQALHEINHYDEAVKHLQRAYDL-SREQ  115 (253)
Q Consensus        82 ~~a~~~lg~~~~~~~~~~~A~~~~~~al~l-~p~~  115 (253)
                      +..+|.+|..+...++|.+|.+.+..|++. +|.+
T Consensus       220 v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~  254 (455)
T 3t5v_B          220 IEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLP  254 (455)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred             EeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcc
Confidence            456899999999999999999999999999 8865

>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A

Probab=86.94  E-value=10  Score=31.18  Aligned_cols=27  Identities=19%  Similarity=0.020  Sum_probs=23.8

Q ss_pred             CcHHHHHHHHHHHHHhCCHHHHHHHHH
Q psy11461         80 SLVKAQFFLGQALHEINHYDEAVKHLQ  106 (253)
Q Consensus        80 ~~~~a~~~lg~~~~~~~~~~~A~~~~~  106 (253)
                      .++..|..+|..++..|++.+|..+|-
T Consensus       132 Gdp~LH~~~a~~~~~e~~~~~A~~H~i  158 (312)
T 2wpv_A          132 GDPYLHNTIGSKLLEGDFVYEAERYFM  158 (312)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence            367789999999999999999998876

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=86.80  E-value=6.1  Score=29.64  Aligned_cols=44  Identities=14%  Similarity=-0.097  Sum_probs=22.5

Q ss_pred             HhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q psy11461         60 KLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRA  108 (253)
Q Consensus        60 ~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~a  108 (253)
                      +.|+++.|...++..     ++...|..+|......|+++-|+.+|.++
T Consensus        17 ~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~   60 (177)
T 3mkq_B           17 EYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQ   60 (177)
T ss_dssp             HTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred             hcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence            345555555554433     34445555555555555555555555543

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=83.88  E-value=17  Score=34.76  Aligned_cols=92  Identities=22%  Similarity=0.155  Sum_probs=66.5

Q ss_pred             HHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHh-hCC-------------------
Q psy11461         20 EGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALE-LEP-------------------   79 (253)
Q Consensus        20 ~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~-l~p-------------------   79 (253)
                      +...+...|.++-|.+    .+...|.++..-+-+|.+|+..|++++|..+|.+|-. +..                   
T Consensus       816 l~~~L~~~~~~~~a~e----L~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e  891 (950)
T 4gq2_M          816 LVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYH  891 (950)
T ss_dssp             HHHHHHHTTCHHHHHH----HGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTT
T ss_pred             HHHHHHHhcHHHHHHH----HHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCccc
Confidence            5667777888775543    5567788888888999999999999999999987642 211                   


Q ss_pred             -C--cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461         80 -S--LVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQ  115 (253)
Q Consensus        80 -~--~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~  115 (253)
                       +  ....|.....++-..+-++-++...+.|+.....+
T Consensus       892 ~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~d  930 (950)
T 4gq2_M          892 HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETD  930 (950)
T ss_dssp             TCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSC
T ss_pred             ccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccC
Confidence             1  11244555666677788888999999998765433

>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1

Probab=83.41  E-value=1.4  Score=30.73  Aligned_cols=32  Identities=22%  Similarity=0.256  Sum_probs=19.7

Q ss_pred             cccHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Q psy11461         11 NLSDKELKDEGNRYFGLRQYEEAINCYTRAII   42 (253)
Q Consensus        11 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~   42 (253)
                      ...+..+...|...=..|+|.+|+.+|..++.
T Consensus        15 l~kAi~lv~~Ave~D~ag~y~eAl~lY~~Aie   46 (117)
T 2cpt_A           15 LQKAIDLASKAAQEDKAGNYEEALQLYQHAVQ   46 (117)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            34555556666666666666666666666654

>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A

Probab=83.29  E-value=3.4  Score=26.11  Aligned_cols=33  Identities=18%  Similarity=0.214  Sum_probs=25.6

Q ss_pred             HHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHH
Q psy11461         18 KDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSY   50 (253)
Q Consensus        18 ~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~   50 (253)
                      ..+|..+...|++++|+.++.+|+...|.-..+
T Consensus        21 V~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~L   53 (73)
T 3ax2_A           21 IQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQL   53 (73)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHH
Confidence            347888888888888888888888887775444

>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}

Probab=82.75  E-value=2.8  Score=32.20  Aligned_cols=53  Identities=9%  Similarity=-0.051  Sum_probs=37.2

Q ss_pred             HHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHH-----HHHHHHHHHHhCCHHH
Q psy11461         48 PSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKA-----QFFLGQALHEINHYDE  100 (253)
Q Consensus        48 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a-----~~~lg~~~~~~~~~~~  100 (253)
                      ..+.+-+|..+...++|.+|..++..|+...|.....     +..+--+..-+|+...
T Consensus        14 v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~~~~k~~IL~yLIp~~Ll~G~iP~   71 (203)
T 3t5x_A           14 VTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSSQKNKRMILIYLLPVKMLLGHMPT   71 (203)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTTCEEC
T ss_pred             HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHcCCCCC
Confidence            4577788999999999999999999999887765322     3333344455676543

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=82.31  E-value=10  Score=37.05  Aligned_cols=94  Identities=20%  Similarity=0.134  Sum_probs=68.6

Q ss_pred             HHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhh-CC-------------------
Q psy11461         20 EGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALEL-EP-------------------   79 (253)
Q Consensus        20 ~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l-~p-------------------   79 (253)
                      +...+...|.++.+.+    .+...|.++...+.+|.+++..|++++|..+|.+|-.- ..                   
T Consensus       818 l~~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~  893 (1139)
T 4fhn_B          818 LVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYH  893 (1139)
T ss_dssp             HHHHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTT
T ss_pred             HHHHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccccc
Confidence            4455666777766544    34567888888899999999999999999999887321 00                   


Q ss_pred             ---CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhccc
Q psy11461         80 ---SLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNL  117 (253)
Q Consensus        80 ---~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~~  117 (253)
                         .-...|+.....+-..+.++.+++..+.|++..+.+..
T Consensus       894 ~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~  934 (1139)
T 4fhn_B          894 HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDE  934 (1139)
T ss_dssp             SCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCH
T ss_pred             ccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCCh
Confidence               11234556666777789999999999999988665433

>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}

Probab=82.04  E-value=7.6  Score=25.08  Aligned_cols=32  Identities=22%  Similarity=0.095  Sum_probs=24.5

Q ss_pred             ccHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Q psy11461         12 LSDKELKDEGNRYFGLRQYEEAINCYTRAIIK   43 (253)
Q Consensus        12 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~   43 (253)
                      ..+..+...|..+=+.|+|.+|+.+|..++..
T Consensus        17 ~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~   48 (83)
T 2w2u_A           17 EMARKYAINAVKADKEGNAEEAITNYKKAIEV   48 (83)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            35566777787888888888888888888764

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=82.02  E-value=7.4  Score=28.14  Aligned_cols=83  Identities=12%  Similarity=0.087  Sum_probs=56.4

Q ss_pred             hccCHHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhCCHHHHHHH
Q psy11461         26 GLRQYEEAINCYTRAIIKNPVIPSYFTNRA-LCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKH  104 (253)
Q Consensus        26 ~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a-~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~~~~~~A~~~  104 (253)
                      .-|+...-+.+|-+.    ..+.. |..+| ..+..+|+-++-.+.+...+.-.+-++..++.+|.+|...|+..+|-+.
T Consensus        73 ~C~NlKrVi~C~~~~----n~~se-~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eL  147 (172)
T 1wy6_A           73 KCQNLKSVVECGVIN----NTLNE-HVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTL  147 (172)
T ss_dssp             GCSCTHHHHHHHHHT----TCCCH-HHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             hhhcHHHHHHHHHHh----cchHH-HHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHH
Confidence            456666777777643    22223 33444 3455677777777777666666667788999999999999999999999


Q ss_pred             HHHHHhhch
Q psy11461        105 LQRAYDLSR  113 (253)
Q Consensus       105 ~~~al~l~p  113 (253)
                      +.+|-+.+-
T Consensus       148 l~~AC~kG~  156 (172)
T 1wy6_A          148 LIEACKKGE  156 (172)
T ss_dssp             HHHHHHTTC
T ss_pred             HHHHHHhhh
Confidence            888877643

>3fau_A NEDD4-binding protein 2; SMR, small-MUTS related domain, nicking endonuclease, alternative splicing, ATP-binding, coiled coil, cytoplasm, hydrolase; 1.90A {Homo sapiens} SCOP: d.68.8.1

Probab=81.77  E-value=0.66  Score=30.05  Aligned_cols=17  Identities=18%  Similarity=0.454  Sum_probs=16.0

Q ss_pred             HHHHHHHHhhhcCcccC
Q psy11461        236 MKEVVDNFLQENDWAYE  252 (253)
Q Consensus       236 lk~a~~~~l~~n~wa~~  252 (253)
                      ||.+|..||.++||+|+
T Consensus        54 Lk~~V~~~L~~~~~~~~   70 (82)
T 3fau_A           54 IKPAVIKYLISHSFRFS   70 (82)
T ss_dssp             HHHHHHHHHHHTTCCEE
T ss_pred             HHHHHHHHHHhCCCcee
Confidence            99999999999999984

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=81.59  E-value=12  Score=31.79  Aligned_cols=99  Identities=13%  Similarity=0.092  Sum_probs=71.6

Q ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHHh----------------------CCCCH--------------------H--
Q psy11461         14 DKELKDEGNRYFGLRQYEEAINCYTRAIIK----------------------NPVIP--------------------S--   49 (253)
Q Consensus        14 a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~----------------------~p~~~--------------------~--   49 (253)
                      -.+...+|..|...|++++-.+++......                      -|.+.                    .  
T Consensus        19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr   98 (394)
T 3txn_A           19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLR   98 (394)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            356788999999999998888877554221                      12211                    1  


Q ss_pred             --HHHHHHHHHHHhhCHHHHHHHHHHHHhh----CCC--cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhc
Q psy11461         50 --YFTNRALCYLKLKQYVHCCDDCRKALEL----EPS--LVKAQFFLGQALHEINHYDEAVKHLQRAYDLS  112 (253)
Q Consensus        50 --~~~~~a~~~~~~~~~~~A~~~~~~al~l----~p~--~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~  112 (253)
                        +-..+|..|+..|+|.+|...+.+...-    |..  -...+..-...|..++++..+...+.+|....
T Consensus        99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~  169 (394)
T 3txn_A           99 QSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTA  169 (394)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhh
Confidence              1236799999999999998888887763    221  23456667788999999999999999988765

>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}

Probab=80.41  E-value=2.6  Score=27.39  Aligned_cols=32  Identities=25%  Similarity=0.193  Sum_probs=20.3

Q ss_pred             cccHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Q psy11461         11 NLSDKELKDEGNRYFGLRQYEEAINCYTRAII   42 (253)
Q Consensus        11 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~   42 (253)
                      -..+..+...|...-..|+|++|+.+|..++.
T Consensus        10 l~~A~~l~~~Av~~D~~g~y~eAl~~Y~~aie   41 (85)
T 2v6x_A           10 LTKGIELVQKAIDLDTATQYEEAYTAYYNGLD   41 (85)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            34555666666666666777777776666654

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=80.13  E-value=3.6  Score=36.40  Aligned_cols=70  Identities=11%  Similarity=0.061  Sum_probs=58.8

Q ss_pred             CcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCc
Q psy11461         10 NNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVI-------PSYFTNRALCYLKLKQYVHCCDDCRKALELEPSL   81 (253)
Q Consensus        10 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~   81 (253)
                      ....+..+..+-..|...+.|++|..+..++.  .|.+       ..+++..|.++.-+++|.+|..++..|+...|.+
T Consensus       227 ~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~  303 (523)
T 4b4t_S          227 NETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHN  303 (523)
T ss_dssp             SCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCS
T ss_pred             cchhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence            34557777888889999999999999999985  4532       4678888999999999999999999999987754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	253
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	7e-32
d1a17a_	159	a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo	4e-11
d1elra_	128	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	7e-11
d1hh8a_	192	a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-	1e-10
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	2e-10
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	5e-10
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	2e-09
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	4e-09
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	5e-09
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	4e-07
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	1e-05
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	9e-04
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	0.003
d1elwa_	117	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	1e-09
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	3e-08
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	8e-05
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	3e-07
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	3e-06
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	7e-04
d1kt1a1	168	a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M	3e-06
d1kt1a1	168	a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M	0.001
d1ihga1	169	a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau	5e-06
d1ihga1	169	a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau	0.003
d1xnfa_	259	a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli	1e-05
d1xnfa_	259	a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli	0.002
d1hz4a_	366	a.118.8.2 (A:) Transcription factor MalT domain II	2e-05
d2hr2a1	156	a.118.8.8 (A:2-157) Hypothetical protein CT2138 {C	2e-05
d1p5qa1	170	a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal d	3e-05
d2fbna1	153	a.118.8.1 (A:22-174) Putative 70 kda peptidylproly	5e-05
d2c2la2	80	g.44.1.2 (A:225-304) STIP1 homology and U box-cont	4e-04
d2h6fa1	315	a.118.6.1 (A:55-369) Protein farnesyltransferase a	4e-04
d1t1ha_	78	g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cre	0.001
d1qqea_	290	a.118.8.1 (A:) Vesicular transport protein sec17 {	0.002
d1dcea1	334	a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr	0.002

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  114 bits (285), Expect = 7e-32
 Identities = 103/197 (52%), Positives = 136/197 (69%), Gaps = 1/197 (0%)

Query: 16  ELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKAL 75
           ELK++GNR F  R+Y EA  CY RAI +NP++  Y+TNRALCYLK++Q      DCR+AL
Sbjct: 6   ELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRAL 65

Query: 76  ELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIACQLRIAKKKRW 135
           EL+   VKA FFLGQ   E+  YDEA+ +LQRAY L++EQ LN+GDDI   LRIAKKKRW
Sbjct: 66  ELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRW 125

Query: 136 AETEEKRIAQEIELLTYLNRLITEDAEKELGSIRRDAETKRLDGDAVQEAVMRIEARRDR 195
              EE+RI QE EL +YL RLI  + E+EL   +R+ E    DG   +     IEA+ D+
Sbjct: 126 NSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHI-RAQQACIEAKHDK 184

Query: 196 SMAELNDLFVAIDERRR 212
            MA++++LF  +DE+R+
Sbjct: 185 YMADMDELFSQVDEKRK 201

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 159

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.8 bits (138), Expect = 4e-11
 Identities = 36/150 (24%), Positives = 66/150 (44%), Gaps = 5/150 (3%)

Query: 15  KELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKA 74
           +ELK + N YF  + YE AI  Y++AI  NP    Y+ NR+L YL+ + Y +   D  +A
Sbjct: 11  EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRA 70

Query: 75  LELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIACQLRIAKKKR 134
           +EL+   +K  +    +   +  +  A++  +    +          D   + +   K  
Sbjct: 71  IELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDK-----DAKMKYQECNKIV 125

Query: 135 WAETEEKRIAQEIELLTYLNRLITEDAEKE 164
             +  E+ IA +    + ++ L  E    E
Sbjct: 126 KQKAFERAIAGDEHKRSVVDSLDIESMTIE 155

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.4 bits (135), Expect = 7e-11
 Identities = 24/109 (22%), Positives = 49/109 (44%), Gaps = 7/109 (6%)

Query: 16  ELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKAL 75
           + K+ GN  +  + ++ A+  Y +A   +P   +Y TN+A  Y +   Y  C + C KA+
Sbjct: 6   KEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAI 65

Query: 76  ELEPS-------LVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNL 117
           E+          + KA   +G +  +   Y +A+    ++    R  ++
Sbjct: 66  EVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDV 114

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.2 bits (137), Expect = 1e-10
 Identities = 21/102 (20%), Positives = 38/102 (37%), Gaps = 3/102 (2%)

Query: 16  ELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKAL 75
            L +EG      + ++ A++ ++     +  I     N    Y  LK          +++
Sbjct: 7   SLWNEGVLAADKKDWKGALDAFSAVQDPHSRI---CFNIGCMYTILKNMTEAEKAFTRSI 63

Query: 76  ELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNL 117
             +  L  A F  G   ++   YD A+K L+ A    R   L
Sbjct: 64  NRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQL 105

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.8 bits (138), Expect = 2e-10
 Identities = 22/91 (24%), Positives = 30/91 (32%)

Query: 21  GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
            N         EA +CY  A+   P       N A    +           RKALE+ P 
Sbjct: 278 ANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPE 337

Query: 81  LVKAQFFLGQALHEINHYDEAVKHLQRAYDL 111
              A   L   L +     EA+ H + A  +
Sbjct: 338 FAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.6 bits (135), Expect = 5e-10
 Identities = 23/94 (24%), Positives = 37/94 (39%)

Query: 21  GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
              Y+     + AI+ Y RAI   P  P  + N A    +        D    AL L P+
Sbjct: 244 ACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPT 303

Query: 81  LVKAQFFLGQALHEINHYDEAVKHLQRAYDLSRE 114
              +   L     E  + +EAV+  ++A ++  E
Sbjct: 304 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPE 337

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.1 bits (131), Expect = 2e-09
 Identities = 11/82 (13%), Positives = 25/82 (30%)

Query: 17 LKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALE 76
            +  +R +    +E A     +   + P         +  + + ++          A++
Sbjct: 2  PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK 61

Query: 77 LEPSLVKAQFFLGQALHEINHY 98
            P L +A   LG    E    
Sbjct: 62 QNPLLAEAYSNLGNVYKERGQL 83

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.9 bits (128), Expect = 4e-09
 Identities = 29/136 (21%), Positives = 44/136 (32%)

Query: 21  GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
           GN     R ++ A+  Y RA+  +P       N A  Y +        D  R+A+EL+P 
Sbjct: 210 GNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH 269

Query: 81  LVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIACQLRIAKKKRWAETEE 140
              A   L  AL E     EA      A  L      +  +    +      +       
Sbjct: 270 FPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYR 329

Query: 141 KRIAQEIELLTYLNRL 156
           K +    E     + L
Sbjct: 330 KALEVFPEFAAAHSNL 345

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.5 bits (127), Expect = 5e-09
 Identities = 15/76 (19%), Positives = 29/76 (38%)

Query: 21  GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
            N        EEA+  Y +A+   P   +  +N A    +  +        ++A+ + P+
Sbjct: 312 ANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT 371

Query: 81  LVKAQFFLGQALHEIN 96
              A   +G  L E+ 
Sbjct: 372 FADAYSNMGNTLKEMQ 387

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.7 bits (112), Expect = 4e-07
 Identities = 17/94 (18%), Positives = 34/94 (36%)

Query: 21  GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
           G  +    +   AI+ + +A+  +P     + N      + + +        +AL L P+
Sbjct: 176 GCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN 235

Query: 81  LVKAQFFLGQALHEINHYDEAVKHLQRAYDLSRE 114
                  L    +E    D A+   +RA +L   
Sbjct: 236 HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH 269

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.9 bits (102), Expect = 1e-05
 Identities = 31/135 (22%), Positives = 48/135 (35%)

Query: 22  NRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSL 81
           N    L + EEA  CY +AI   P     ++N    +    +         KA+ L+P+ 
Sbjct: 143 NLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNF 202

Query: 82  VKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIACQLRIAKKKRWAETEEK 141
           + A   LG  L E   +D AV    RA  LS    + +G+               +T  +
Sbjct: 203 LDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRR 262

Query: 142 RIAQEIELLTYLNRL 156
            I  +         L
Sbjct: 263 AIELQPHFPDAYCNL 277

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.7 bits (86), Expect = 9e-04
 Identities = 7/59 (11%), Positives = 12/59 (20%)

Query: 53  NRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDL 111
             A    +   +      C +    EP        L     +    D +      A   
Sbjct: 4   ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ 62

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.8 bits (81), Expect = 0.003
 Identities = 25/136 (18%), Positives = 49/136 (36%)

Query: 21  GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
            + +F  R+ + + +  T AI +NP++   ++N    Y +  Q     +  R AL L+P 
Sbjct: 40  SSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPD 99

Query: 81  LVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIACQLRIAKKKRWAETEE 140
            +     L  AL      + AV+    A   + +      D       + + +       
Sbjct: 100 FIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYL 159

Query: 141 KRIAQEIELLTYLNRL 156
           K I  +       + L
Sbjct: 160 KAIETQPNFAVAWSNL 175

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.7 bits (125), Expect = 1e-09
 Identities = 26/97 (26%), Positives = 47/97 (48%)

Query: 15  KELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKA 74
            ELK++GN+   +   ++A+ CY+ AI  +P     ++NR+  Y K   Y    +D  K 
Sbjct: 4   NELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKT 63

Query: 75  LELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDL 111
           ++L+P   K       AL  +N ++EA +  +     
Sbjct: 64  VDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKH 100

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.7 bits (123), Expect = 3e-08
 Identities = 9/88 (10%), Positives = 19/88 (21%), Gaps = 2/88 (2%)

Query: 21  GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
           G            +   + +            +         Q        R A +L PS
Sbjct: 127 GIISNKQTHTSAIVKPQSSSCSYIC--QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPS 184

Query: 81  LVKAQFFLGQALHEINHYDEAVKHLQRA 108
             +    L         +   + +  R+
Sbjct: 185 NGQPYNQLAILASSKGDHLTTIFYYCRS 212

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (95), Expect = 8e-05
 Identities = 13/83 (15%), Positives = 28/83 (33%)

Query: 21  GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
           G+      Q  +A + Y  A    P     +   A+       ++       +++ ++  
Sbjct: 159 GDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFP 218

Query: 81  LVKAQFFLGQALHEINHYDEAVK 103
              A   L +AL +     + VK
Sbjct: 219 FPAASTNLQKALSKALESRDEVK 241

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 47.7 bits (113), Expect = 3e-07
 Identities = 13/117 (11%), Positives = 35/117 (29%)

Query: 29  QYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFL 88
           Q ++A+     AI  +P   S  ++          +    +   ++++L P  +     L
Sbjct: 11  QLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQL 70

Query: 89  GQALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIACQLRIAKKKRWAETEEKRIAQ 145
              +       +  +    A  L   + L           +++          +I +
Sbjct: 71  RHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEE 127

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.2 bits (105), Expect = 3e-06
 Identities = 19/119 (15%), Positives = 39/119 (32%), Gaps = 2/119 (1%)

Query: 3   KSHNFTTNN--LSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLK 60
           K + F   N      +  +EG R         A+  +  A+ ++P     +        +
Sbjct: 6   KGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAE 65

Query: 61  LKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNY 119
            +Q +      R+ LEL+P    A   L  +    +   +A + L+     +       
Sbjct: 66  NEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLV 124

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (86), Expect = 7e-04
 Identities = 27/122 (22%), Positives = 53/122 (43%)

Query: 21  GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
           G  +    +Y++A++C+T A+   P     +           Q        R+ALEL+P 
Sbjct: 179 GVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPG 238

Query: 81  LVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIACQLRIAKKKRWAETEE 140
            +++++ LG +   +  + EAV+H   A ++ R+     G+  A    I    R A +  
Sbjct: 239 YIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSML 298

Query: 141 KR 142
            +
Sbjct: 299 GQ 300

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 43.8 bits (102), Expect = 3e-06
 Identities = 26/112 (23%), Positives = 50/112 (44%), Gaps = 15/112 (13%)

Query: 15  KELKDEGNRYFGLRQYEEAINCYTRA---------------IIKNPVIPSYFTNRALCYL 59
             +K++G  YF   +Y +A+  Y +                      + + F N A+CYL
Sbjct: 16  AIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYL 75

Query: 60  KLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDL 111
           KL++Y    + C KAL L+ +  K  +  G+A   +N ++ A    ++  ++
Sbjct: 76  KLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 127

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 36.5 bits (83), Expect = 0.001
 Identities = 16/80 (20%), Positives = 32/80 (40%)

Query: 24  YFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVK 83
           Y  LR+Y +A+ C  +A+  +         R    L + ++     D  K LE+ P    
Sbjct: 74  YLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKA 133

Query: 84  AQFFLGQALHEINHYDEAVK 103
           A+  +     +   ++E  +
Sbjct: 134 ARLQIFMCQKKAKEHNERDR 153

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 43.1 bits (100), Expect = 5e-06
 Identities = 35/136 (25%), Positives = 62/136 (45%), Gaps = 16/136 (11%)

Query: 15  KELKDEGNRYFGLRQYEEAINCYTRAIIK----------------NPVIPSYFTNRALCY 58
           ++LK+ GN +F  + +E AI  YT+ +                   PV  S   N   C 
Sbjct: 28  EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACK 87

Query: 59  LKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLN 118
           LK+  +    D C +ALE++PS  KA +   Q    +  YD+A+  L++A +++ E    
Sbjct: 88  LKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAI 147

Query: 119 YGDDIACQLRIAKKKR 134
             + +  + +I  +K 
Sbjct: 148 QAELLKVKQKIKAQKD 163

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 35.4 bits (80), Expect = 0.003
 Identities = 17/80 (21%), Positives = 31/80 (38%)

Query: 24  YFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVK 83
              +  ++ A++    A+  +P        RA  +  LK+Y     D +KA E+ P    
Sbjct: 87  KLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKA 146

Query: 84  AQFFLGQALHEINHYDEAVK 103
            Q  L +   +I    +  K
Sbjct: 147 IQAELLKVKQKIKAQKDKEK 166

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

 Score = 43.3 bits (100), Expect = 1e-05
 Identities = 21/115 (18%), Positives = 38/115 (33%)

Query: 21  GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
           G  Y  L     A N +++A+   P +P  F    +   +   +    +     LEL+P+
Sbjct: 44  GVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT 103

Query: 81  LVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIACQLRIAKKKRW 135
              A    G AL+       A   L   Y                + ++ +K+  
Sbjct: 104 YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAK 158

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

 Score = 36.3 bits (82), Expect = 0.002
 Identities = 12/88 (13%), Positives = 24/88 (27%)

Query: 21  GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
             +    +Q +E +  +     K     +          +         D      L   
Sbjct: 148 AEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEH 207

Query: 81  LVKAQFFLGQALHEINHYDEAVKHLQRA 108
           L +  F+LG+    +   D A    + A
Sbjct: 208 LSETNFYLGKYYLSLGDLDSATALFKLA 235

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

 Score = 43.0 bits (99), Expect = 2e-05
 Identities = 23/142 (16%), Positives = 40/142 (28%), Gaps = 15/142 (10%)

Query: 21  GNRYFGLRQYEEAINCYTRAI----IKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKAL- 75
              +        A N            N  +   + N A   + L ++        +   
Sbjct: 220 VIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNE 279

Query: 76  -----ELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQN-----LNYGDDIAC 125
                 L   L +    L Q   +     +A + L  A  L+         +  G+ +A 
Sbjct: 280 NARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQ 339

Query: 126 QLRIAKKKRWAETEEKRIAQEI 147
           QLR   +       E+  AQ I
Sbjct: 340 QLRQLIQLNTLPELEQHRAQRI 361

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} Length = 156

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

 Score = 41.3 bits (95), Expect = 2e-05
 Identities = 17/139 (12%), Positives = 35/139 (25%), Gaps = 23/139 (16%)

Query: 17  LKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSY------------FTNRALCYLKLKQY 64
              +  R     +Y+EA     RA+  +  +P                  A     L+ +
Sbjct: 12  ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSF 71

Query: 65  VHCCDDCRKALELEPSLVKA-----------QFFLGQALHEINHYDEAVKHLQRAYDLSR 113
                   KAL       +             +    AL  +    EA+   ++  ++  
Sbjct: 72  DEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIE 131

Query: 114 EQNLNYGDDIACQLRIAKK 132
           E+                +
Sbjct: 132 ERKGETPGKERMMEVAIDR 150

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.2 bits (95), Expect = 3e-05
 Identities = 26/112 (23%), Positives = 47/112 (41%), Gaps = 15/112 (13%)

Query: 15  KELKDEGNRYFGLRQYEEAINCYTRA---------------IIKNPVIPSYFTNRALCYL 59
             +K+ G  YF   +Y++A+  Y +                     +  +   N A+C+L
Sbjct: 14  TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHL 73

Query: 60  KLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDL 111
           KL+ +    + C KALEL+ +  K     G+A   +N ++ A    Q+   L
Sbjct: 74  KLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL 125

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Length = 153

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

 Score = 40.4 bits (93), Expect = 5e-05
 Identities = 33/135 (24%), Positives = 54/135 (40%), Gaps = 16/135 (11%)

Query: 16  ELKDEGNRYFGLRQYEEAINCYTR----------------AIIKNPVIPSYFTNRALCYL 59
           ++K+EGN +F   +  EAI  Y                     K  +  S   N A CY 
Sbjct: 19  DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYN 78

Query: 60  KLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNY 119
           K K Y    D   K L+++ + VKA + LG A       +EA ++L +A  L+       
Sbjct: 79  KNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIR 138

Query: 120 GDDIACQLRIAKKKR 134
                C  ++ + ++
Sbjct: 139 NSYELCVNKLKEARK 153

>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 80

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.4 bits (83), Expect = 4e-04
 Identities = 27/47 (57%), Positives = 36/47 (76%)

Query: 207 IDERRRKVGHFDPVTRVKLSADQLIPNFAMKEVVDNFLQENDWAYEY 253
           I+E  ++VGHF+PVTR  L+ +QLIPN AMKEV+D F+ EN W  +Y
Sbjct: 34  IEEHLQRVGHFNPVTRSPLTQEQLIPNLAMKEVIDAFISENGWVEDY 80

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (89), Expect = 4e-04
 Identities = 10/92 (10%), Positives = 25/92 (27%), Gaps = 1/92 (1%)

Query: 21  GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKL-KQYVHCCDDCRKALELEP 79
                   + E A      AI  N    + +  R +    L K      +     +E +P
Sbjct: 50  RAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP 109

Query: 80  SLVKAQFFLGQALHEINHYDEAVKHLQRAYDL 111
              +        +  +    + ++ +    + 
Sbjct: 110 KNYQVWHHRRVLVEWLRDPSQELEFIADILNQ 141

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 78

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: E3 ubiquitin ligase PUB14
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 35.1 bits (80), Expect = 0.001
 Identities = 8/42 (19%), Positives = 18/42 (42%)

Query: 206 AIDERRRKVGHFDPVTRVKLSADQLIPNFAMKEVVDNFLQEN 247
           +I +         P ++  L    L PN+ +K ++  + + N
Sbjct: 34  SIQKWLDAGHKTCPKSQETLLHAGLTPNYVLKSLIALWCESN 75

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 290

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.5 bits (83), Expect = 0.002
 Identities = 19/105 (18%), Positives = 34/105 (32%), Gaps = 14/105 (13%)

Query: 21  GNRYFGLRQYEEAINCYTRAIIKNPVIPS-------YFTNRALCYLKLKQYVHCCDDCRK 73
            +      QY EA + Y++ I  +            YF  + LC L     V      ++
Sbjct: 165 ADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQE 224

Query: 74  ALELEPSLVKAQFF-----LGQALHEINH--YDEAVKHLQRAYDL 111
               +P+   ++       L  A++E +     E  K       L
Sbjct: 225 GQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRL 269

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.5 bits (83), Expect = 0.002
 Identities = 7/78 (8%), Positives = 13/78 (16%)

Query: 21  GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
             +   L+   E+         +N                L               ++P 
Sbjct: 249 VEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPM 308

Query: 81  LVKAQFFLGQALHEINHY 98
                  L       N  
Sbjct: 309 RAAYLDDLRSKFLLENSV 326

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	253
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.93
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.85
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.85
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.79
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.79
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.76
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.76
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.76
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.75
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.72
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.68
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.67
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.64
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.63
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.62
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.61
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.58
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.58
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.56
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.55
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.54
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.53
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.5
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.46
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.43
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.42
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.37
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.37
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.34
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.31
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.3
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.3
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.28
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	99.25
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.24
d2c2la2	80	STIP1 homology and U box-containing protein 1, STU	99.22
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.16
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.08
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	99.02
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.0
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.0
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.99
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.98
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.83
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.74
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.71
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.64
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	98.59
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.58
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.57
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.56
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.33
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.26
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.22
d1t1ha_	78	E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi	98.21
d1wgma_	98	Ubiquitin conjugation factor E4A {Human (Homo sapi	98.13
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	97.84
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	97.81
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	97.1
d2crba1	83	Nuclear receptor binding factor 2, NRBF2, N-termin	90.93
d1wfda_	93	Hypothetical protein 1500032H18Rik {Mouse (Mus mus	89.69
d1jm7b_	97	bard1 RING domain {Human (Homo sapiens) [TaxId: 96	86.21
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	85.28
d2cfua2	505	Alkylsulfatase SdsA1 {Pseudomonas aeruginosa [TaxI	82.53
d2baya1	56	Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac	82.09
d2crba1	83	Nuclear receptor binding factor 2, NRBF2, N-termin	81.87

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.93  E-value=9.6e-25  Score=169.90  Aligned_cols=198  Identities=52%  Similarity=0.874  Sum_probs=158.0

Q ss_pred             cHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q psy11461         13 SDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQAL   92 (253)
Q Consensus        13 ~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~   92 (253)
                      ++..++..|+.+++.|+|++|+..|++||.++|.++.+|+++|.||.++|+|++|+.+|.+|+.++|+++.+|+++|.++
T Consensus         3 ~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~   82 (201)
T d2c2la1           3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ   82 (201)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            57889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhCCHHHHHHHHHHHHhhchhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy11461         93 HEINHYDEAVKHLQRAYDLSREQNLNYGDDIACQLRIAKKKRWAETEEKRIAQEIELLTYLNRLITEDAEKELGSIRRDA  172 (253)
Q Consensus        93 ~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~  172 (253)
                      ..+|++++|+..|++|++++|++...+...+...+..++...+......+..........+..++.....+.+..+....
T Consensus        83 ~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (201)
T d2c2la1          83 LEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIEERRIHQESELHSYLTRLIAAERERELEECQRNH  162 (201)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHHHHHHHHHHTTTSGGG
T ss_pred             HHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999998777777777777777766665555444444555566666666666655555444332


Q ss_pred             hhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy11461        173 ETKRLDGDAVQEAVMRIEARRDRSMAELNDLFVAIDERR  211 (253)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~  211 (253)
                      ...+ ....+......+....+..+.++.++|..+++..
T Consensus       163 ~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~lf~~~de~~  200 (201)
T d2c2la1         163 EGHE-DDGHIRAQQACIEAKHDKYMADMDELFSQVDEKR  200 (201)
T ss_dssp             TTTS-CHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCTT
T ss_pred             Hhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            2111 1111222344456778888999999998876543

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=2e-20  Score=133.72  Aligned_cols=104  Identities=25%  Similarity=0.435  Sum_probs=101.0

Q ss_pred             cHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q psy11461         13 SDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQAL   92 (253)
Q Consensus        13 ~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~   92 (253)
                      .+..++..|+.++..|+|++|+.+|+++|..+|.++.+|.++|.||..+|++++|+.++.+++.++|+++.+|+++|.++
T Consensus         2 ~~~~l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~   81 (117)
T d1elwa_           2 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL   81 (117)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHH
Confidence            35678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhCCHHHHHHHHHHHHhhchhcc
Q psy11461         93 HEINHYDEAVKHLQRAYDLSREQN  116 (253)
Q Consensus        93 ~~~~~~~~A~~~~~~al~l~p~~~  116 (253)
                      ..+|++++|+..|+++++++|+++
T Consensus        82 ~~~~~~~~A~~~~~~a~~~~p~~~  105 (117)
T d1elwa_          82 EFLNRFEEAKRTYEEGLKHEANNP  105 (117)
T ss_dssp             HHTTCHHHHHHHHHHHHTTCTTCH
T ss_pred             HHccCHHHHHHHHHHHHHhCCCCH
Confidence            999999999999999999999983

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=9.5e-20  Score=136.94  Aligned_cols=105  Identities=27%  Similarity=0.484  Sum_probs=102.2

Q ss_pred             ccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q psy11461         12 LSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQA   91 (253)
Q Consensus        12 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~   91 (253)
                      ..+..++..|+.+++.|+|++|+.+|++++.++|+++.+|.++|.|+..+|++++|+.+|.++++++|++..+++.+|.+
T Consensus         8 ~~a~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~   87 (159)
T d1a17a_           8 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAAS   87 (159)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHH
Confidence            45788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCHHHHHHHHHHHHhhchhcc
Q psy11461         92 LHEINHYDEAVKHLQRAYDLSREQN  116 (253)
Q Consensus        92 ~~~~~~~~~A~~~~~~al~l~p~~~  116 (253)
                      +..+|++++|+..|++++.++|++.
T Consensus        88 ~~~~g~~~eA~~~~~~a~~~~p~~~  112 (159)
T d1a17a_          88 NMALGKFRAALRDYETVVKVKPHDK  112 (159)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTTCH
T ss_pred             HHHcCCHHHHHHHHHHHHHcCCCCH
Confidence            9999999999999999999999974

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.79  E-value=3.4e-18  Score=127.68  Aligned_cols=104  Identities=32%  Similarity=0.365  Sum_probs=96.9

Q ss_pred             ccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCC----------------HHHHHHHHHHHHHhhCHHHHHHHHHHHH
Q psy11461         12 LSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVI----------------PSYFTNRALCYLKLKQYVHCCDDCRKAL   75 (253)
Q Consensus        12 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~----------------~~~~~~~a~~~~~~~~~~~A~~~~~~al   75 (253)
                      ..+..++..|+.+|+.|+|.+|+..|++|+...|..                ..++.|+|.||+++|+|++|+.+|.+++
T Consensus        15 ~~a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al   94 (153)
T d2fbna1          15 QSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVL   94 (153)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhccc
Confidence            456788999999999999999999999999876532                2478999999999999999999999999


Q ss_pred             hhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461         76 ELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQ  115 (253)
Q Consensus        76 ~l~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~  115 (253)
                      .++|++.++|+++|.++..+|++++|+..|.++++++|++
T Consensus        95 ~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n  134 (153)
T d2fbna1          95 KIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNN  134 (153)
T ss_dssp             HHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC
T ss_pred             cccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence            9999999999999999999999999999999999999997

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=1.3e-17  Score=126.58  Aligned_cols=104  Identities=25%  Similarity=0.377  Sum_probs=97.7

Q ss_pred             cHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHhhCHHHHHHHHHHHHhh
Q psy11461         13 SDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVI---------------PSYFTNRALCYLKLKQYVHCCDDCRKALEL   77 (253)
Q Consensus        13 ~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~---------------~~~~~~~a~~~~~~~~~~~A~~~~~~al~l   77 (253)
                      .+..+...|+.+|..|+|++|+.+|+++|...|..               ..+|.|+|.||.++|+|++|+.+++++|.+
T Consensus        12 ~a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~   91 (170)
T d1p5qa1          12 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL   91 (170)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhc
Confidence            47788899999999999999999999999997753               257889999999999999999999999999


Q ss_pred             CCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhcc
Q psy11461         78 EPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQN  116 (253)
Q Consensus        78 ~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~  116 (253)
                      +|+++.+++++|.++..+|++++|+..|+++++++|++.
T Consensus        92 ~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~  130 (170)
T d1p5qa1          92 DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNK  130 (170)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCH
T ss_pred             cccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCH
Confidence            999999999999999999999999999999999999873

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.76  E-value=4.4e-17  Score=123.34  Aligned_cols=105  Identities=25%  Similarity=0.457  Sum_probs=97.3

Q ss_pred             ccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCC---------------CHHHHHHHHHHHHHhhCHHHHHHHHHHHHh
Q psy11461         12 LSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPV---------------IPSYFTNRALCYLKLKQYVHCCDDCRKALE   76 (253)
Q Consensus        12 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~---------------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~   76 (253)
                      ..+..+...|+.+|+.|+|.+|+.+|++|+...|.               ...+|.|+|.||.++|+|++|+.++.+++.
T Consensus        13 ~~a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~   92 (168)
T d1kt1a1          13 EQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG   92 (168)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhh
Confidence            45788999999999999999999999999986443               235688999999999999999999999999


Q ss_pred             hCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhcc
Q psy11461         77 LEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQN  116 (253)
Q Consensus        77 l~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~  116 (253)
                      ++|++..+++++|.++..+|++++|+..|.+++.++|++.
T Consensus        93 l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~  132 (168)
T d1kt1a1          93 LDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNK  132 (168)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCH
T ss_pred             cccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence            9999999999999999999999999999999999999973

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=1.4e-17  Score=120.51  Aligned_cols=102  Identities=24%  Similarity=0.424  Sum_probs=95.2

Q ss_pred             cHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcH-------HHH
Q psy11461         13 SDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLV-------KAQ   85 (253)
Q Consensus        13 ~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~-------~a~   85 (253)
                      .|..++++|+.++..|+|++|+.+|+++|.++|.++.++.++|.||.++|+|++|+.+|.+++.++|.+.       .++
T Consensus         3 ~a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~   82 (128)
T d1elra_           3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY   82 (128)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            5778999999999999999999999999999999999999999999999999999999999999998764       467


Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHhhchh
Q psy11461         86 FFLGQALHEINHYDEAVKHLQRAYDLSRE  114 (253)
Q Consensus        86 ~~lg~~~~~~~~~~~A~~~~~~al~l~p~  114 (253)
                      +.+|.++..++++++|+.+|.+++..++.
T Consensus        83 ~~lg~~~~~~~~~~~A~~~~~kal~~~~~  111 (128)
T d1elra_          83 ARIGNSYFKEEKYKDAIHFYNKSLAEHRT  111 (128)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Confidence            77888889999999999999999988765

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.76  E-value=1.6e-17  Score=125.80  Aligned_cols=103  Identities=32%  Similarity=0.553  Sum_probs=96.3

Q ss_pred             cHHHHHHHHHHHHhccCHHHHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHh
Q psy11461         13 SDKELKDEGNRYFGLRQYEEAINCYTRAIIK----------------NPVIPSYFTNRALCYLKLKQYVHCCDDCRKALE   76 (253)
Q Consensus        13 ~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~----------------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~   76 (253)
                      .+..+...|+.++..|+|..|+..|++++..                +|..+.++.|+|.||.++|+|++|+.+|.+|++
T Consensus        26 ~a~~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~  105 (169)
T d1ihga1          26 ISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALE  105 (169)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhh
Confidence            3456788999999999999999999999864                456777899999999999999999999999999


Q ss_pred             hCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461         77 LEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQ  115 (253)
Q Consensus        77 l~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~  115 (253)
                      ++|+++.+|+++|.++..+|++++|+..|+++++++|++
T Consensus       106 ~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n  144 (169)
T d1ihga1         106 IDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPED  144 (169)
T ss_dssp             TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             hhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCC
Confidence            999999999999999999999999999999999999997

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.75  E-value=2.2e-17  Score=132.31  Aligned_cols=109  Identities=20%  Similarity=0.212  Sum_probs=104.7

Q ss_pred             CCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHH
Q psy11461          9 TNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFL   88 (253)
Q Consensus         9 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l   88 (253)
                      .++..+..++.+|.+++..|+|++|+..|++++.++|+++.+|+++|.+|..+|++++|+.+|++++.++|+++.+++.+
T Consensus        32 ~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l  111 (259)
T d1xnfa_          32 TDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNR  111 (259)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHH
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCHHHHHHHHHHHHhhchhccc
Q psy11461         89 GQALHEINHYDEAVKHLQRAYDLSREQNL  117 (253)
Q Consensus        89 g~~~~~~~~~~~A~~~~~~al~l~p~~~~  117 (253)
                      |.++..+|++++|+..|+++++++|++..
T Consensus       112 g~~~~~~g~~~~A~~~~~~al~~~p~~~~  140 (259)
T d1xnfa_         112 GIALYYGGRDKLAQDDLLAFYQDDPNDPF  140 (259)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHhhHHHHHHHHHHHHhhccccHH
Confidence            99999999999999999999999998643

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.72  E-value=4.4e-17  Score=115.08  Aligned_cols=95  Identities=15%  Similarity=0.101  Sum_probs=92.1

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q psy11461         15 KELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHE   94 (253)
Q Consensus        15 ~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~   94 (253)
                      ...+..|..+++.|++.+|+.+|++++..+|+++.+|.++|.++..++++++|+.+++++++++|++..+++.+|.++..
T Consensus        17 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~   96 (112)
T d1hxia_          17 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN   96 (112)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHH
Confidence            44688999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCHHHHHHHHHHHH
Q psy11461         95 INHYDEAVKHLQRAY  109 (253)
Q Consensus        95 ~~~~~~A~~~~~~al  109 (253)
                      +|++++|++++++++
T Consensus        97 ~g~~~~A~~~l~~~l  111 (112)
T d1hxia_          97 EHNANAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHh
Confidence            999999999999876

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=8.2e-16  Score=118.80  Aligned_cols=99  Identities=19%  Similarity=0.213  Sum_probs=77.9

Q ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q psy11461         14 DKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALH   93 (253)
Q Consensus        14 a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~   93 (253)
                      +..+++.|..++..|+|+.|++.|.+   +.|.++.+++|+|.+|..+|++++|+.+|++|++++|+++.+|+++|.++.
T Consensus         5 ~~~l~~~g~~~~~~~d~~~Al~~~~~---i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~   81 (192)
T d1hh8a_           5 AISLWNEGVLAADKKDWKGALDAFSA---VQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYY   81 (192)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHT---SSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHh---cCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHH
Confidence            44566778888888888888888875   355667788888888888888888888888888888888888888888888


Q ss_pred             HhCCHHHHHHHHHHHHhhchhc
Q psy11461         94 EINHYDEAVKHLQRAYDLSREQ  115 (253)
Q Consensus        94 ~~~~~~~A~~~~~~al~l~p~~  115 (253)
                      .+|++++|+..|.+|+...+.+
T Consensus        82 ~~g~~~~A~~~~~kAl~~~~~n  103 (192)
T d1hh8a_          82 QTEKYDLAIKDLKEALIQLRGN  103 (192)
T ss_dssp             HTTCHHHHHHHHHHHHHTTTTC
T ss_pred             hhccHHHHHHHHHHHHHhCccC
Confidence            8888888888888888765543

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=5.5e-16  Score=110.96  Aligned_cols=99  Identities=12%  Similarity=0.089  Sum_probs=91.3

Q ss_pred             HHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---hhCHHHHHHHHHHHHhhCCCc--HHHHHHHHHHH
Q psy11461         18 KDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLK---LKQYVHCCDDCRKALELEPSL--VKAQFFLGQAL   92 (253)
Q Consensus        18 ~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~---~~~~~~A~~~~~~al~l~p~~--~~a~~~lg~~~   92 (253)
                      -++++.++..+++++|++.|.+++..+|.++.+++|+|.|+.+   .+++.+|+..+++++..+|.+  ..+++++|.+|
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y   82 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN   82 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence            4678899999999999999999999999999999999999986   456678999999999998866  45899999999


Q ss_pred             HHhCCHHHHHHHHHHHHhhchhcc
Q psy11461         93 HEINHYDEAVKHLQRAYDLSREQN  116 (253)
Q Consensus        93 ~~~~~~~~A~~~~~~al~l~p~~~  116 (253)
                      ..+|++++|+++|+++++++|++.
T Consensus        83 ~~~g~~~~A~~~~~~aL~~~P~~~  106 (122)
T d1nzna_          83 YRLKEYEKALKYVRGLLQTEPQNN  106 (122)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHhhhHHHHHHHHHHHHhCcCCH
Confidence            999999999999999999999984

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=1.5e-15  Score=117.21  Aligned_cols=71  Identities=20%  Similarity=0.256  Sum_probs=66.7

Q ss_pred             cccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCc
Q psy11461         11 NLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSL   81 (253)
Q Consensus        11 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~   81 (253)
                      +..+..++++|.+++..|+|++|+.+|++||+++|+++.+|+++|.|+.++|++++|+.+|++|+...+.+
T Consensus        33 ~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n  103 (192)
T d1hh8a_          33 DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGN  103 (192)
T ss_dssp             SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTC
T ss_pred             CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccC
Confidence            34678899999999999999999999999999999999999999999999999999999999999887765

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=3.3e-15  Score=123.21  Aligned_cols=107  Identities=21%  Similarity=0.317  Sum_probs=101.7

Q ss_pred             cccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q psy11461         11 NLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQ   90 (253)
Q Consensus        11 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~   90 (253)
                      ...+..+..+|..+...|++++|+..|.+++..+|.++.+|.++|.++..+|++++|+..|+++++++|+++.+++.+|.
T Consensus       169 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~  248 (323)
T d1fcha_         169 SIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGI  248 (323)
T ss_dssp             SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             ccccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHH
Confidence            34578899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCHHHHHHHHHHHHhhchhccc
Q psy11461         91 ALHEINHYDEAVKHLQRAYDLSREQNL  117 (253)
Q Consensus        91 ~~~~~~~~~~A~~~~~~al~l~p~~~~  117 (253)
                      ++..+|++++|+..|++|++++|++..
T Consensus       249 ~~~~~g~~~~A~~~~~~al~l~p~~~~  275 (323)
T d1fcha_         249 SCINLGAHREAVEHFLEALNMQRKSRG  275 (323)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHHHTC--
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCCcChh
Confidence            999999999999999999999998743

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=1.4e-15  Score=126.25  Aligned_cols=120  Identities=8%  Similarity=-0.036  Sum_probs=92.1

Q ss_pred             CcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhC-HHHHHHHHHHHHhhCCCcHHHHHHH
Q psy11461         10 NNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQ-YVHCCDDCRKALELEPSLVKAQFFL   88 (253)
Q Consensus        10 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~-~~~A~~~~~~al~l~p~~~~a~~~l   88 (253)
                      +|..+.++..+|..+.+.+.+++|+.+|++||.++|.+..+|.+||.++..+|+ +++|+.++.+++.++|++..+|+++
T Consensus        39 ~p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~  118 (315)
T d2h6fa1          39 SDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHR  118 (315)
T ss_dssp             CHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence            456677777788888888888888888888888888888888888888877764 7888888888888888888888888


Q ss_pred             HHHHHHhCCHHHHHHHHHHHHhhchhcccchHHHHHHHHHH
Q psy11461         89 GQALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIACQLRI  129 (253)
Q Consensus        89 g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~  129 (253)
                      |.++..+|++++|+..+.++++++|.+...+..........
T Consensus       119 ~~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~  159 (315)
T d2h6fa1         119 RVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEF  159 (315)
T ss_dssp             HHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             hHHHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHH
Confidence            88888888888888888888888888765554444433333

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=3.5e-15  Score=123.89  Aligned_cols=112  Identities=13%  Similarity=0.057  Sum_probs=106.4

Q ss_pred             CCcccHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHH
Q psy11461          9 TNNLSDKELKDEGNRYFGLR-QYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFF   87 (253)
Q Consensus         9 ~~~~~a~~~~~~g~~~~~~g-~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~   87 (253)
                      -+|....+|..+|.++...| ++++|+..|.+++..+|.+..+|.++|.++..+|++++|+.++.+++.++|++..+|++
T Consensus        72 lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~  151 (315)
T d2h6fa1          72 LNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQH  151 (315)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhhhhcchHHHHH
Confidence            46889999999999999876 59999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCHHHHHHHHHHHHhhchhcccchH
Q psy11461         88 LGQALHEINHYDEAVKHLQRAYDLSREQNLNYG  120 (253)
Q Consensus        88 lg~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~  120 (253)
                      +|.++..+|++++|+..|.++++++|.+..++.
T Consensus       152 ~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~  184 (315)
T d2h6fa1         152 RQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWN  184 (315)
T ss_dssp             HHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHH
Confidence            999999999999999999999999999865543

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.58  E-value=9.2e-15  Score=107.69  Aligned_cols=94  Identities=18%  Similarity=0.248  Sum_probs=85.8

Q ss_pred             HHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh----------hCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q psy11461         22 NRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKL----------KQYVHCCDDCRKALELEPSLVKAQFFLGQA   91 (253)
Q Consensus        22 ~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~----------~~~~~A~~~~~~al~l~p~~~~a~~~lg~~   91 (253)
                      ..+-+.+.|++|+..|++++.++|+++.+++++|.++..+          +.+++|+..|++|++++|++..+|+++|.+
T Consensus         5 ~~~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~   84 (145)
T d1zu2a1           5 TEFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNA   84 (145)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHH
Confidence            3456778899999999999999999999999999999864          556899999999999999999999999999


Q ss_pred             HHHhCC-----------HHHHHHHHHHHHhhchhc
Q psy11461         92 LHEINH-----------YDEAVKHLQRAYDLSREQ  115 (253)
Q Consensus        92 ~~~~~~-----------~~~A~~~~~~al~l~p~~  115 (253)
                      |..+|+           +++|+++|++|++++|++
T Consensus        85 y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~  119 (145)
T d1zu2a1          85 YTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDN  119 (145)
T ss_dssp             HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred             HHHcccchhhHHHHHHhHHHhhhhhhcccccCCCH
Confidence            988764           799999999999999997

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.58  E-value=1.6e-14  Score=107.60  Aligned_cols=104  Identities=16%  Similarity=0.170  Sum_probs=91.1

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCC------------HHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCC--
Q psy11461         15 KELKDEGNRYFGLRQYEEAINCYTRAIIKNPVI------------PSYFTNRALCYLKLKQYVHCCDDCRKALELEPS--   80 (253)
Q Consensus        15 ~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~------------~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~--   80 (253)
                      ..++..|+.++..|+|++|+..|+++|.++|..            +.+|.|+|.||..+|+|++|+.++.+++.+.|.  
T Consensus        10 ~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~   89 (156)
T d2hr2a1          10 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG   89 (156)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccc
Confidence            344455999999999999999999999998764            368999999999999999999999999987542  


Q ss_pred             ---------cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhcccc
Q psy11461         81 ---------LVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLN  118 (253)
Q Consensus        81 ---------~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~~~  118 (253)
                               ...+++++|.++..+|++++|+..|++|+++.|+....
T Consensus        90 ~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~~~  136 (156)
T d2hr2a1          90 ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE  136 (156)
T ss_dssp             CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred             cccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhhch
Confidence                     34578999999999999999999999999999987544

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=2.5e-14  Score=119.08  Aligned_cols=142  Identities=18%  Similarity=0.122  Sum_probs=107.8

Q ss_pred             CcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q psy11461         10 NNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLG   89 (253)
Q Consensus        10 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg   89 (253)
                      .+..+..+..+|..++..|++++|+..|++++..+|+++.++.++|.++..+|++.+|+..+..++...|.+...+..+|
T Consensus       233 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~  312 (388)
T d1w3ba_         233 SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLA  312 (388)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHH
Confidence            45567778888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHhCCHHHHHHHHHHHHhhchhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11461         90 QALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIACQLRIAKKKRWAETEEKRIAQEIELLT  151 (253)
Q Consensus        90 ~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (253)
                      .++...|++++|+..|+++++++|++...+...........+...+....++.+..+|+...
T Consensus       313 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~  374 (388)
T d1w3ba_         313 NIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFAD  374 (388)
T ss_dssp             HHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence            88888888888888888888888887655554444444444444555555555555554433

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=2.3e-14  Score=119.21  Aligned_cols=140  Identities=20%  Similarity=0.150  Sum_probs=117.1

Q ss_pred             CCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHH
Q psy11461          9 TNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFL   88 (253)
Q Consensus         9 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l   88 (253)
                      .+|..+..+..+|..+...|++++|+..|.+++..+|..+..+.++|.++...|++++|+..++++++++|+++.+++.+
T Consensus       198 ~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  277 (388)
T d1w3ba_         198 LDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNL  277 (388)
T ss_dssp             HCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHH
T ss_pred             hCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            35778889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCHHHHHHHHHHHHhhchhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11461         89 GQALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIACQLRIAKKKRWAETEEKRIAQEIE  148 (253)
Q Consensus        89 g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (253)
                      |.++...|++.+|+..+.+++...|.+...................+....++.+...|+
T Consensus       278 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~  337 (388)
T d1w3ba_         278 ANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPE  337 (388)
T ss_dssp             HHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTT
T ss_pred             HHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence            999999999999999999999999987655544444444444444444444444444444

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=5.6e-14  Score=115.66  Aligned_cols=104  Identities=15%  Similarity=0.135  Sum_probs=98.9

Q ss_pred             cHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q psy11461         13 SDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQAL   92 (253)
Q Consensus        13 ~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~   92 (253)
                      .....+..|..++..|+|++|+.+|++++..+|.++.+|.++|.++..+|++++|+..+.+++.++|++..+++.+|.++
T Consensus        18 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~   97 (323)
T d1fcha_          18 DHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSF   97 (323)
T ss_dssp             TCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccccccccccccccc
Confidence            33446789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhCCHHHHHHHHHHHHhhchhcc
Q psy11461         93 HEINHYDEAVKHLQRAYDLSREQN  116 (253)
Q Consensus        93 ~~~~~~~~A~~~~~~al~l~p~~~  116 (253)
                      ...|++++|+..+.+++...|...
T Consensus        98 ~~~~~~~~A~~~~~~~~~~~~~~~  121 (323)
T d1fcha_          98 TNESLQRQACEILRDWLRYTPAYA  121 (323)
T ss_dssp             HHTTCHHHHHHHHHHHHHTSTTTG
T ss_pred             cccccccccccchhhHHHhccchH
Confidence            999999999999999999998753

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.53  E-value=2.1e-13  Score=108.65  Aligned_cols=107  Identities=13%  Similarity=0.102  Sum_probs=95.8

Q ss_pred             CCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHH----
Q psy11461          9 TNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKA----   84 (253)
Q Consensus         9 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a----   84 (253)
                      -+|..+.++..+|.++...|++++|+.+|.+++.++|.++.++.++|.+|..+|++++|+..++++++++|++...    
T Consensus        66 l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~  145 (259)
T d1xnfa_          66 IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWL  145 (259)
T ss_dssp             HCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             cCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHH
Confidence            3678899999999999999999999999999999999999999999999999999999999999999998764432    


Q ss_pred             ------------------------------------------------------------------HHHHHHHHHHhCCH
Q psy11461         85 ------------------------------------------------------------------QFFLGQALHEINHY   98 (253)
Q Consensus        85 ------------------------------------------------------------------~~~lg~~~~~~~~~   98 (253)
                                                                                        ++++|.++..+|++
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~  225 (259)
T d1xnfa_         146 YLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDL  225 (259)
T ss_dssp             HHHHHHHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHhhhHHHHHHHHHHhhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCH
Confidence                                                                              55678888888888


Q ss_pred             HHHHHHHHHHHhhchhc
Q psy11461         99 DEAVKHLQRAYDLSREQ  115 (253)
Q Consensus        99 ~~A~~~~~~al~l~p~~  115 (253)
                      ++|+..|++|+..+|.+
T Consensus       226 ~~A~~~~~~al~~~p~~  242 (259)
T d1xnfa_         226 DSATALFKLAVANNVHN  242 (259)
T ss_dssp             HHHHHHHHHHHTTCCTT
T ss_pred             HHHHHHHHHHHHcCCCC
Confidence            88888888888888875

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=1.1e-13  Score=94.34  Aligned_cols=83  Identities=13%  Similarity=0.011  Sum_probs=75.2

Q ss_pred             cHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCC-------CHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHH
Q psy11461         13 SDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPV-------IPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQ   85 (253)
Q Consensus        13 ~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~-------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~   85 (253)
                      ++...+.+|..+++.|+|..|+..|++|+.+.|.       .+.++.++|.|+.++|++++|+..++++++++|++..++
T Consensus         4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~   83 (95)
T d1tjca_           4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN   83 (95)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHH
Confidence            4778999999999999999999999999988554       367899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHh
Q psy11461         86 FFLGQALHEI   95 (253)
Q Consensus        86 ~~lg~~~~~~   95 (253)
                      .+++.....+
T Consensus        84 ~Nl~~~~~~l   93 (95)
T d1tjca_          84 GNLKYFEYIM   93 (95)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9998766544

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=4.6e-13  Score=94.66  Aligned_cols=84  Identities=11%  Similarity=0.057  Sum_probs=80.4

Q ss_pred             CCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHH
Q psy11461          9 TNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFL   88 (253)
Q Consensus         9 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l   88 (253)
                      .+|..+..+..+|.+++..|+|.+|+..|.+++.++|.++.+|+++|.++..+|++++|+.++++++.++|+++.++..+
T Consensus        32 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l  111 (117)
T d1elwa_          32 LDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGL  111 (117)
T ss_dssp             HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred             cCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            46888999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             HHHH
Q psy11461         89 GQAL   92 (253)
Q Consensus        89 g~~~   92 (253)
                      +.+.
T Consensus       112 ~~l~  115 (117)
T d1elwa_         112 QNME  115 (117)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            8764

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=1.8e-12  Score=96.36  Aligned_cols=95  Identities=16%  Similarity=0.155  Sum_probs=85.2

Q ss_pred             CCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHH
Q psy11461          9 TNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFL   88 (253)
Q Consensus         9 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l   88 (253)
                      .+|..+..|..+|.+++..|++.+|+..|.+++.++|.++.+|.++|.++..+|++++|+.++++++.++|++..++..+
T Consensus        39 ~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~~p~~~~~~~~l  118 (159)
T d1a17a_          39 LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKY  118 (159)
T ss_dssp             HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred             cchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence            35788999999999999999999999999999999999999999999999999999999999999999999999999888


Q ss_pred             HHHHHH--hCCHHHHHH
Q psy11461         89 GQALHE--INHYDEAVK  103 (253)
Q Consensus        89 g~~~~~--~~~~~~A~~  103 (253)
                      +.+...  .+.+++|+.
T Consensus       119 ~~~~~~~~~~~~~~a~~  135 (159)
T d1a17a_         119 QECNKIVKQKAFERAIA  135 (159)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            877543  333445543

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.42  E-value=7.6e-13  Score=99.50  Aligned_cols=93  Identities=18%  Similarity=0.198  Sum_probs=85.4

Q ss_pred             CcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q psy11461         10 NNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLG   89 (253)
Q Consensus        10 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg   89 (253)
                      .|..+..+.++|.++++.|+|++|+..|+++|.++|.++.+|+++|.+|..+|++++|+.+|+++++++|++..+...++
T Consensus        73 ~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~  152 (169)
T d1ihga1          73 QPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELL  152 (169)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             ChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            35667789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCHHHHH
Q psy11461         90 QALHEINHYDEAV  102 (253)
Q Consensus        90 ~~~~~~~~~~~A~  102 (253)
                      .+...+....++.
T Consensus       153 ~~~~~l~~~~~~~  165 (169)
T d1ihga1         153 KVKQKIKAQKDKE  165 (169)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            8887776665543

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.37  E-value=5.6e-12  Score=94.64  Aligned_cols=97  Identities=16%  Similarity=0.244  Sum_probs=85.2

Q ss_pred             cHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q psy11461         13 SDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQAL   92 (253)
Q Consensus        13 ~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~   92 (253)
                      .+..+.++|.+++..|+|.+|+..+++++.++|.++.+++++|.||..+|++++|+.+|.+++.++|++..+...++.+.
T Consensus        63 ~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~  142 (168)
T d1kt1a1          63 LLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQ  142 (168)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHH
T ss_pred             HHHHHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            34567789999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHhCCHHH-HHHHHHHHH
Q psy11461         93 HEINHYDE-AVKHLQRAY  109 (253)
Q Consensus        93 ~~~~~~~~-A~~~~~~al  109 (253)
                      ..++.+.+ ..+.|.+.+
T Consensus       143 ~~~~~~~e~~kk~~~~~f  160 (168)
T d1kt1a1         143 KKAKEHNERDRRTYANMF  160 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhHHHHHHHHHHHHH
Confidence            77776544 334444433

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=6.2e-12  Score=94.62  Aligned_cols=88  Identities=16%  Similarity=0.121  Sum_probs=81.4

Q ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q psy11461         14 DKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALH   93 (253)
Q Consensus        14 a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~   93 (253)
                      ...+.++|.+|++.|+|++|+..+.++|.++|.++.+++++|.||..+|++++|+.+|++++.++|++..+...++.+..
T Consensus        62 ~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~  141 (170)
T d1p5qa1          62 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQ  141 (170)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            45677899999999999999999999999999999999999999999999999999999999999999999999999987


Q ss_pred             HhCCHHHH
Q psy11461         94 EINHYDEA  101 (253)
Q Consensus        94 ~~~~~~~A  101 (253)
                      ..+...+.
T Consensus       142 ~~~~~~~~  149 (170)
T d1p5qa1         142 RIRRQLAR  149 (170)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            77665544

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.34  E-value=5.6e-12  Score=93.19  Aligned_cols=83  Identities=10%  Similarity=0.061  Sum_probs=77.5

Q ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q psy11461         14 DKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALH   93 (253)
Q Consensus        14 a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~   93 (253)
                      ...+.++|.++++.|+|.+|+..|++++.++|.++.+|+++|.++..+|++++|+.+|.+++.++|++..+...++.+..
T Consensus        67 ~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~  146 (153)
T d2fbna1          67 ISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVN  146 (153)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             HHHHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            35678899999999999999999999999999999999999999999999999999999999999999999998888766


Q ss_pred             HhC
Q psy11461         94 EIN   96 (253)
Q Consensus        94 ~~~   96 (253)
                      .++
T Consensus       147 kl~  149 (153)
T d2fbna1         147 KLK  149 (153)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            543

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.31  E-value=1.3e-11  Score=94.26  Aligned_cols=102  Identities=11%  Similarity=0.052  Sum_probs=84.2

Q ss_pred             CHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhcccchHHHHHHH
Q psy11461         47 IPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIACQ  126 (253)
Q Consensus        47 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~  126 (253)
                      ++..+...|.++++.|+|++|+..|.+|+.++|+++.+|+++|.||..+|++++|+..|.+|++++|++...+.......
T Consensus         3 ~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~   82 (201)
T d2c2la1           3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ   82 (201)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            45567789999999999999999999999999999999999999999999999999999999999999877666555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q psy11461        127 LRIAKKKRWAETEEKRIAQEIE  148 (253)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~  148 (253)
                      ....+...+....++.+...|.
T Consensus        83 ~~l~~~~~A~~~~~~al~l~p~  104 (201)
T d2c2la1          83 LEMESYDEAIANLQRAYSLAKE  104 (201)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHhCcc
Confidence            5555555555444455544443

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.30  E-value=3.1e-11  Score=84.29  Aligned_cols=83  Identities=17%  Similarity=0.033  Sum_probs=72.2

Q ss_pred             HHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhcccchHHHHHHHHHH
Q psy11461         50 YFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIACQLRI  129 (253)
Q Consensus        50 ~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~  129 (253)
                      .++++|.++.+.|++.+|+..+++++.++|+++.+|+.+|.++..+|++++|+..|+++++++|++...+..........
T Consensus        18 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~   97 (112)
T d1hxia_          18 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE   97 (112)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHC
Confidence            46789999999999999999999999999999999999999999999999999999999999999866555444444444


Q ss_pred             HHH
Q psy11461        130 AKK  132 (253)
Q Consensus       130 ~~~  132 (253)
                      ...
T Consensus        98 g~~  100 (112)
T d1hxia_          98 HNA  100 (112)
T ss_dssp             HHH
T ss_pred             CCH
Confidence            333

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.30  E-value=7.9e-12  Score=91.59  Aligned_cols=93  Identities=17%  Similarity=0.152  Sum_probs=81.6

Q ss_pred             CCcccHHHHHHHHHHHHhc----------cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhC-----------HHHH
Q psy11461          9 TNNLSDKELKDEGNRYFGL----------RQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQ-----------YVHC   67 (253)
Q Consensus         9 ~~~~~a~~~~~~g~~~~~~----------g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~-----------~~~A   67 (253)
                      .+|.++.++..+|.++...          +.+++|+..|++++.++|+++.+|+++|.+|..+|+           |.+|
T Consensus        26 ~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A  105 (145)
T d1zu2a1          26 SNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLA  105 (145)
T ss_dssp             HCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_pred             hCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHh
Confidence            4689999999999999854          556899999999999999999999999999988764           7999


Q ss_pred             HHHHHHHHhhCCCcHHHHHHHHHHHHHhCCHHHH
Q psy11461         68 CDDCRKALELEPSLVKAQFFLGQALHEINHYDEA  101 (253)
Q Consensus        68 ~~~~~~al~l~p~~~~a~~~lg~~~~~~~~~~~A  101 (253)
                      +.+|++++.++|++..++..++.+....+.+.++
T Consensus       106 ~~~~~kal~l~P~~~~~~~~L~~~~ka~~~~~e~  139 (145)
T d1zu2a1         106 TQFFQQAVDEQPDNTHYLKSLEMTAKAPQLHAEA  139 (145)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHTHHHHHHHH
T ss_pred             hhhhhcccccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999887665555554

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=5.7e-11  Score=84.90  Aligned_cols=82  Identities=18%  Similarity=0.160  Sum_probs=71.9

Q ss_pred             HHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhcccchHHHHHHHHH
Q psy11461         49 SYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIACQLR  128 (253)
Q Consensus        49 ~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~  128 (253)
                      ..+-++|.+++..|+|++|+.+|.+++.++|+++.+++++|.++..+|+|++|+..+.++++++|.+...+.........
T Consensus         5 ~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~   84 (128)
T d1elra_           5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR   84 (128)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence            35678999999999999999999999999999999999999999999999999999999999999987665544433333


Q ss_pred             HH
Q psy11461        129 IA  130 (253)
Q Consensus       129 ~~  130 (253)
                      .+
T Consensus        85 lg   86 (128)
T d1elra_          85 IG   86 (128)
T ss_dssp             HH
T ss_pred             HH
Confidence            33

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.25  E-value=6.5e-11  Score=89.68  Aligned_cols=100  Identities=12%  Similarity=-0.078  Sum_probs=91.3

Q ss_pred             ccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCH----------------------HHHHHHHHHHHHhhCHHHHHH
Q psy11461         12 LSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIP----------------------SYFTNRALCYLKLKQYVHCCD   69 (253)
Q Consensus        12 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~----------------------~~~~~~a~~~~~~~~~~~A~~   69 (253)
                      .....+...|..+...|++++|+..|.+|+.+.+...                      .++.++|.++..+|++++|+.
T Consensus         9 ~~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~   88 (179)
T d2ff4a2           9 GRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIA   88 (179)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHH
Confidence            3456788999999999999999999999999866431                      468999999999999999999


Q ss_pred             HHHHHHhhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Q psy11461         70 DCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDL  111 (253)
Q Consensus        70 ~~~~al~l~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l  111 (253)
                      ++++++.++|.+..+|..++.++..+|++.+|++.|+++.+.
T Consensus        89 ~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~  130 (179)
T d2ff4a2          89 ELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTT  130 (179)
T ss_dssp             HHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999998554

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=8.9e-12  Score=88.55  Aligned_cols=87  Identities=15%  Similarity=0.086  Sum_probs=76.5

Q ss_pred             CCcccHHHHHHHHHHHHhc---cCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHH
Q psy11461          9 TNNLSDKELKDEGNRYFGL---RQYEEAINCYTRAIIKNPVI--PSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVK   83 (253)
Q Consensus         9 ~~~~~a~~~~~~g~~~~~~---g~~~~A~~~y~~ai~~~p~~--~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~   83 (253)
                      .+|..+.+++++|.++++.   +++.+|+..|++++..+|.+  +.+++++|.+|.++|++++|+.+++++++++|++..
T Consensus        28 ~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~~P~~~~  107 (122)
T d1nzna_          28 AGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQ  107 (122)
T ss_dssp             HSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             hCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhCcCCHH
Confidence            4678899999999999874   45567999999999998765  458999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHh
Q psy11461         84 AQFFLGQALHEI   95 (253)
Q Consensus        84 a~~~lg~~~~~~   95 (253)
                      |...++.+.-.+
T Consensus       108 A~~l~~~I~~~~  119 (122)
T d1nzna_         108 AKELERLIDKAM  119 (122)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            998888776543

>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.22  E-value=4e-12  Score=83.37  Aligned_cols=40  Identities=63%  Similarity=1.148  Sum_probs=38.4

Q ss_pred             cCCCCCCCCCCCCCCCCcCcHHHHHHHHHHhhhcCcccCC
Q psy11461        214 VGHFDPVTRVKLSADQLIPNFAMKEVVDNFLQENDWAYEY  253 (253)
Q Consensus       214 ~g~~DP~tr~~l~~~~l~pN~~lk~a~~~~l~~n~wa~~~  253 (253)
                      .+.++|++|++++.++|+||.+||++|+.||.+|||++||
T Consensus        41 ~~~~cP~c~~~l~~~~l~pN~~L~~~I~~~l~~~~~~~d~   80 (80)
T d2c2la2          41 VGHFNPVTRSPLTQEQLIPNLAMKEVIDAFISENGWVEDY   80 (80)
T ss_dssp             TCSSCTTTCCCCCGGGCEECHHHHHHHHHHHTTCSCSSCC
T ss_pred             CCccCCCccccccccccccHHHHHHHHHHHHHHCCCcCCC
Confidence            5678999999999999999999999999999999999998

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=1.2e-10  Score=78.78  Aligned_cols=71  Identities=15%  Similarity=0.054  Sum_probs=64.0

Q ss_pred             CHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCC-------cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhccc
Q psy11461         47 IPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS-------LVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNL  117 (253)
Q Consensus        47 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~-------~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~~  117 (253)
                      ++.-++++|.++++.|+|.+|+.++++|+.+.|.       ...++.++|.++..+|++++|+..|+++++++|++..
T Consensus         4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~   81 (95)
T d1tjca_           4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQR   81 (95)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHH
Confidence            3556789999999999999999999999998654       3678999999999999999999999999999999843

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=9.6e-11  Score=102.52  Aligned_cols=109  Identities=8%  Similarity=-0.139  Sum_probs=74.0

Q ss_pred             CCCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHH
Q psy11461          8 TTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFF   87 (253)
Q Consensus         8 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~   87 (253)
                      ..++..+..+..+|..+...|++..|+..|.+++..+|  ..++.++|.++..+++|++|+.+|.+|+.++|++..+|+.
T Consensus       114 ~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~  191 (497)
T d1ya0a1         114 NVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYIC--QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQ  191 (497)
T ss_dssp             -----------------------------CCHHHHHHH--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHH
T ss_pred             CCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCH--HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHH
Confidence            34567778888999999999999999999999988765  4688899999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCHHHHHHHHHHHHhhchhcccc
Q psy11461         88 LGQALHEINHYDEAVKHLQRAYDLSREQNLN  118 (253)
Q Consensus        88 lg~~~~~~~~~~~A~~~~~~al~l~p~~~~~  118 (253)
                      +|.++...|++.+|+.+|.+|+.+.|..+.+
T Consensus       192 Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a  222 (497)
T d1ya0a1         192 LAILASSKGDHLTTIFYYCRSIAVKFPFPAA  222 (497)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHSSSBCCHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhCCCCCHHH
Confidence            9999999999999999999999998876443

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=99.02  E-value=2e-09  Score=86.32  Aligned_cols=84  Identities=11%  Similarity=0.052  Sum_probs=74.2

Q ss_pred             HHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhCCHHH
Q psy11461         21 GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDE  100 (253)
Q Consensus        21 g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~~~~~~  100 (253)
                      +..+++.|++++|+..|.++++.+|.++.++.++|.+|...|+|++|+..++++++++|++..++..++.++...+...+
T Consensus         3 ~~~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~   82 (264)
T d1zbpa1           3 WKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKD   82 (264)
T ss_dssp             HHHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHH
Confidence            56788999999999999999999999999999999999999999999999999999999998888777777766665555


Q ss_pred             HHHH
Q psy11461        101 AVKH  104 (253)
Q Consensus       101 A~~~  104 (253)
                      +...
T Consensus        83 a~~~   86 (264)
T d1zbpa1          83 FAQG   86 (264)
T ss_dssp             HTTS
T ss_pred             HHHH
Confidence            5443

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.00  E-value=4.3e-09  Score=86.59  Aligned_cols=95  Identities=7%  Similarity=-0.076  Sum_probs=82.1

Q ss_pred             CCcccHHHHHHHHHHHHhcc--CHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHH
Q psy11461          9 TNNLSDKELKDEGNRYFGLR--QYEEAINCYTRAIIKNPVIPSYF-TNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQ   85 (253)
Q Consensus         9 ~~~~~a~~~~~~g~~~~~~g--~~~~A~~~y~~ai~~~p~~~~~~-~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~   85 (253)
                      .+|.+...|..+|..+...+  ++++|+..+.+++..+|.+..++ ..+|.++...+.+++|+..+++++.++|.+..+|
T Consensus       102 ~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~  181 (334)
T d1dcea1         102 VNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSW  181 (334)
T ss_dssp             HCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHH
T ss_pred             hCCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHH
Confidence            46788888999998887765  48999999999999999988875 5677888889999999999999999999999999


Q ss_pred             HHHHHHHHHhCCHHHHHH
Q psy11461         86 FFLGQALHEINHYDEAVK  103 (253)
Q Consensus        86 ~~lg~~~~~~~~~~~A~~  103 (253)
                      +.+|.++..+|++++|+.
T Consensus       182 ~~l~~~~~~~~~~~~A~~  199 (334)
T d1dcea1         182 HYRSCLLPQLHPQPDSGP  199 (334)
T ss_dssp             HHHHHHHHHHSCCCCSSS
T ss_pred             HHHHHHHHHhcCHHHHHH
Confidence            999999999988765443

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.00  E-value=2.4e-09  Score=88.20  Aligned_cols=112  Identities=9%  Similarity=0.010  Sum_probs=96.1

Q ss_pred             CCcccHHHHHHHHHHHH----------hccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhC--HHHHHHHHHHHHh
Q psy11461          9 TNNLSDKELKDEGNRYF----------GLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQ--YVHCCDDCRKALE   76 (253)
Q Consensus         9 ~~~~~a~~~~~~g~~~~----------~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~--~~~A~~~~~~al~   76 (253)
                      .+|+.+.+|..++..+.          ..|++.+|+.+|++++..+|.++.+|.++|.++...++  +++|+..+.+++.
T Consensus        58 ~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~  137 (334)
T d1dcea1          58 ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLE  137 (334)
T ss_dssp             HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHH
T ss_pred             HCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHh
Confidence            46777777766665544          44558999999999999999999999999999988875  8999999999999


Q ss_pred             hCCCcHHHH-HHHHHHHHHhCCHHHHHHHHHHHHhhchhcccchH
Q psy11461         77 LEPSLVKAQ-FFLGQALHEINHYDEAVKHLQRAYDLSREQNLNYG  120 (253)
Q Consensus        77 l~p~~~~a~-~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~  120 (253)
                      ++|.+..++ +.+|.++...+.+++|+..++++++++|++...+.
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~  182 (334)
T d1dcea1         138 ADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWH  182 (334)
T ss_dssp             HCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHH
T ss_pred             hCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHH
Confidence            999999886 56788899999999999999999999999855443

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.99  E-value=1.8e-09  Score=87.53  Aligned_cols=104  Identities=13%  Similarity=0.162  Sum_probs=74.5

Q ss_pred             ccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCc----
Q psy11461         12 LSDKELKDEGNRYFGLRQYEEAINCYTRAIIKN------PVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSL----   81 (253)
Q Consensus        12 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~----   81 (253)
                      ..+..|...|+.|...|+|++|+.+|.+|+.+.      +..+.+|.++|.||.++|++++|+..+++++.+.+..    
T Consensus        35 ~Aa~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~  114 (290)
T d1qqea_          35 EAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFR  114 (290)
T ss_dssp             HHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccch
Confidence            446677778888888888888888888887763      2234577777888888888888888888877765443    


Q ss_pred             --HHHHHHHHHHHHH-hCCHHHHHHHHHHHHhhchhc
Q psy11461         82 --VKAQFFLGQALHE-INHYDEAVKHLQRAYDLSREQ  115 (253)
Q Consensus        82 --~~a~~~lg~~~~~-~~~~~~A~~~~~~al~l~p~~  115 (253)
                        ..++..+|.++.. .|++++|+..|.+|+++.+..
T Consensus       115 ~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~  151 (290)
T d1qqea_         115 RGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQD  151 (290)
T ss_dssp             HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhc
Confidence              4566777777654 577888888888877776543

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.98  E-value=2.6e-09  Score=86.54  Aligned_cols=110  Identities=13%  Similarity=-0.007  Sum_probs=94.4

Q ss_pred             CcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHH-hhCHHHHHHHHHHHHhhCCC--
Q psy11461         10 NNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVI------PSYFTNRALCYLK-LKQYVHCCDDCRKALELEPS--   80 (253)
Q Consensus        10 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~------~~~~~~~a~~~~~-~~~~~~A~~~~~~al~l~p~--   80 (253)
                      .+..+..+.++|++|...|++++|+.+|.+++.+.+..      ..++.++|.+|.. .|++++|+..+.+|+.+.+.  
T Consensus        73 ~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~  152 (290)
T d1qqea_          73 EDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQ  152 (290)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcC
Confidence            34567889999999999999999999999999986554      5678899988865 69999999999999987533  


Q ss_pred             ----cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhcccch
Q psy11461         81 ----LVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNY  119 (253)
Q Consensus        81 ----~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~~~~  119 (253)
                          ...++..+|.++..+|+|++|+..|.+++...+......
T Consensus       153 ~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~  195 (290)
T d1qqea_         153 SVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQ  195 (290)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTG
T ss_pred             chhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhh
Confidence                245689999999999999999999999999998875443

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.83  E-value=5.7e-08  Score=78.57  Aligned_cols=105  Identities=10%  Similarity=-0.055  Sum_probs=92.7

Q ss_pred             cccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCC-----
Q psy11461         11 NLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIP-----SYFTNRALCYLKLKQYVHCCDDCRKALELEPS-----   80 (253)
Q Consensus        11 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~-----~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~-----   80 (253)
                      +..+......|..++..|++++|+..|++++...|.+.     .++.++|.++..+|++++|+..+.+++.+.+.     
T Consensus         9 ~~~ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~   88 (366)
T d1hz4a_           9 TMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWH   88 (366)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             chhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchH
Confidence            34567777889999999999999999999999999863     57889999999999999999999999987543     


Q ss_pred             -cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461         81 -LVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQ  115 (253)
Q Consensus        81 -~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~  115 (253)
                       ...++..++.++...|++..|...+.+++.+.+..
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~  124 (366)
T d1hz4a_          89 YALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQ  124 (366)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhc
Confidence             24578889999999999999999999999987764

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=3.1e-08  Score=86.23  Aligned_cols=83  Identities=14%  Similarity=0.001  Sum_probs=79.1

Q ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q psy11461         14 DKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALH   93 (253)
Q Consensus        14 a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~   93 (253)
                      ...+..+|..+...|+|++|+.+|.+|+.++|+++.+|+++|.++...|++.+|+.+|.+|+.++|..+.|+.+++.++.
T Consensus       152 ~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~  231 (497)
T d1ya0a1         152 QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS  231 (497)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence            46788999999999999999999999999999999999999999999999999999999999999999999999999887


Q ss_pred             HhC
Q psy11461         94 EIN   96 (253)
Q Consensus        94 ~~~   96 (253)
                      ...
T Consensus       232 ~~~  234 (497)
T d1ya0a1         232 KAL  234 (497)
T ss_dssp             HHT
T ss_pred             Hhh
Confidence            654

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.71  E-value=3.1e-08  Score=80.22  Aligned_cols=105  Identities=13%  Similarity=0.017  Sum_probs=91.9

Q ss_pred             cccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHhhCHHHHHHHHHHHHhh------CCC
Q psy11461         11 NLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVI----PSYFTNRALCYLKLKQYVHCCDDCRKALEL------EPS   80 (253)
Q Consensus        11 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~----~~~~~~~a~~~~~~~~~~~A~~~~~~al~l------~p~   80 (253)
                      +..+..+...|..+...|+++.|...+.+++...|.+    ...+.++|.++..+|++++|+..+++++.+      .|.
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  289 (366)
T d1hz4a_         210 DWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSD  289 (366)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             chHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChH
Confidence            4456678889999999999999999999999887654    456788999999999999999999999854      456


Q ss_pred             cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461         81 LVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQ  115 (253)
Q Consensus        81 ~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~  115 (253)
                      ...++..+|.++..+|++++|+..+++|+++.+..
T Consensus       290 ~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~~  324 (366)
T d1hz4a_         290 LNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRT  324 (366)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhc
Confidence            77899999999999999999999999999987654

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.64  E-value=5e-07  Score=73.21  Aligned_cols=108  Identities=9%  Similarity=-0.103  Sum_probs=90.3

Q ss_pred             CcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHH
Q psy11461         10 NNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIP-SYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFL   88 (253)
Q Consensus        10 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~-~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l   88 (253)
                      .|.....+...+......|+++.|...|.+++...|.+. .+|...+......|.++.|...+.+++...|.+...+...
T Consensus        95 ~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~~~~~~  174 (308)
T d2onda1          95 LKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTA  174 (308)
T ss_dssp             TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHH
Confidence            456677788888888899999999999999998888765 4688888888889999999999999999999888888888


Q ss_pred             HHHHHH-hCCHHHHHHHHHHHHhhchhccc
Q psy11461         89 GQALHE-INHYDEAVKHLQRAYDLSREQNL  117 (253)
Q Consensus        89 g~~~~~-~~~~~~A~~~~~~al~l~p~~~~  117 (253)
                      |..... .|+.+.|...|.+++...|.+..
T Consensus       175 a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~  204 (308)
T d2onda1         175 ALMEYYCSKDKSVAFKIFELGLKKYGDIPE  204 (308)
T ss_dssp             HHHHHHTSCCHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHhccCHHHHHHHHHHHHHhhhhhHH
Confidence            876544 57888899999999998888743

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=98.59  E-value=2.7e-07  Score=67.36  Aligned_cols=69  Identities=20%  Similarity=0.326  Sum_probs=59.3

Q ss_pred             HHHHH--HHHHHHHhhCHHHHHHHHHHHHhhCCCc------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchh
Q psy11461         49 SYFTN--RALCYLKLKQYVHCCDDCRKALELEPSL------------VKAQFFLGQALHEINHYDEAVKHLQRAYDLSRE  114 (253)
Q Consensus        49 ~~~~~--~a~~~~~~~~~~~A~~~~~~al~l~p~~------------~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~  114 (253)
                      .++..  .|..++..|+|++|+..|++|+.++|+.            ..+|.++|.+|..+|++++|+..+.+++++.|.
T Consensus         8 ~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~   87 (156)
T d2hr2a1           8 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR   87 (156)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccc
Confidence            34444  4888889999999999999999998764            357899999999999999999999999999886


Q ss_pred             ccc
Q psy11461        115 QNL  117 (253)
Q Consensus       115 ~~~  117 (253)
                      ...
T Consensus        88 ~~~   90 (156)
T d2hr2a1          88 RGE   90 (156)
T ss_dssp             HCC
T ss_pred             ccc
Confidence            533

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.58  E-value=5.7e-07  Score=62.55  Aligned_cols=69  Identities=12%  Similarity=0.066  Sum_probs=61.6

Q ss_pred             CHHHHHHHHHHHHHh---hCHHHHHHHHHHHHhhCCCcH-HHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461         47 IPSYFTNRALCYLKL---KQYVHCCDDCRKALELEPSLV-KAQFFLGQALHEINHYDEAVKHLQRAYDLSREQ  115 (253)
Q Consensus        47 ~~~~~~~~a~~~~~~---~~~~~A~~~~~~al~l~p~~~-~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~  115 (253)
                      .+...++.|.|+.+.   .+..+++..++.++..+|.+. .++|++|.+|+.+|+|+.|..++.++++++|++
T Consensus        34 s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n  106 (124)
T d2pqrb1          34 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN  106 (124)
T ss_dssp             CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC
T ss_pred             CcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCc
Confidence            367889999999875   456799999999999998775 799999999999999999999999999999998

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.57  E-value=3e-07  Score=63.99  Aligned_cols=79  Identities=8%  Similarity=-0.060  Sum_probs=69.1

Q ss_pred             cHHHHHHHHHHHHhc---cCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHH
Q psy11461         13 SDKELKDEGNRYFGL---RQYEEAINCYTRAIIKNPVIP-SYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFL   88 (253)
Q Consensus        13 ~a~~~~~~g~~~~~~---g~~~~A~~~y~~ai~~~p~~~-~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l   88 (253)
                      ..+.-|+.|.++.+.   .+...||.++..++..+|.+. .+++++|.+|+++|+|++|..+++++++++|+|..+....
T Consensus        34 s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L~  113 (124)
T d2pqrb1          34 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK  113 (124)
T ss_dssp             CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHHH
Confidence            367889999999866   455789999999999999775 7999999999999999999999999999999999987665


Q ss_pred             HHH
Q psy11461         89 GQA   91 (253)
Q Consensus        89 g~~   91 (253)
                      -.+
T Consensus       114 ~~I  116 (124)
T d2pqrb1         114 SMV  116 (124)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            444

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.56  E-value=1.7e-06  Score=70.03  Aligned_cols=103  Identities=8%  Similarity=-0.091  Sum_probs=94.8

Q ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-hhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q psy11461         14 DKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLK-LKQYVHCCDDCRKALELEPSLVKAQFFLGQAL   92 (253)
Q Consensus        14 a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~-~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~   92 (253)
                      ...|...++...+.|+++.|...|.+++...|.+...+...|..... .|+.+.|...+++++..+|+++..|..++..+
T Consensus       134 ~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~  213 (308)
T d2onda1         134 TLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYL  213 (308)
T ss_dssp             HHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence            45688999999999999999999999999999999999999887554 57899999999999999999999999999999


Q ss_pred             HHhCCHHHHHHHHHHHHhhchhcc
Q psy11461         93 HEINHYDEAVKHLQRAYDLSREQN  116 (253)
Q Consensus        93 ~~~~~~~~A~~~~~~al~l~p~~~  116 (253)
                      ...|+++.|...|++|++..|.++
T Consensus       214 ~~~g~~~~aR~~fe~ai~~~~~~~  237 (308)
T d2onda1         214 SHLNEDNNTRVLFERVLTSGSLPP  237 (308)
T ss_dssp             HTTCCHHHHHHHHHHHHHSSSSCG
T ss_pred             HHcCChHHHHHHHHHHHHhCCCCh
Confidence            999999999999999999887654

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.33  E-value=7.3e-06  Score=64.30  Aligned_cols=99  Identities=19%  Similarity=0.218  Sum_probs=86.1

Q ss_pred             cHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hhCHHHHHHHHHHHHhhCCCcHHHHHHH
Q psy11461         13 SDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLK----LKQYVHCCDDCRKALELEPSLVKAQFFL   88 (253)
Q Consensus        13 ~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~l~p~~~~a~~~l   88 (253)
                      +|.+++.+|..++..|++.+|+.+|+++.+.  .++.+++++|.+|..    ..++..|..++..+...  .++.+...+
T Consensus         1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~--~~~~a~~~l   76 (265)
T d1ouva_           1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL--KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL--NYSNGCHLL   76 (265)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccc--cccchhhcc
Confidence            4778999999999999999999999999875  588999999999998    66899999999998874  578889999


Q ss_pred             HHHHHH----hCCHHHHHHHHHHHHhhchhc
Q psy11461         89 GQALHE----INHYDEAVKHLQRAYDLSREQ  115 (253)
Q Consensus        89 g~~~~~----~~~~~~A~~~~~~al~l~p~~  115 (253)
                      |.++..    ..+.+.|...++++...++..
T Consensus        77 ~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~~  107 (265)
T d1ouva_          77 GNLYYSGQGVSQNTNKALQYYSKACDLKYAE  107 (265)
T ss_dssp             HHHHHHTSSSCCCHHHHHHHHHHHHHTTCHH
T ss_pred             ccccccccccchhhHHHHHHHhhhhhhhhhh
Confidence            988876    357899999999998876543

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.26  E-value=3e-06  Score=67.34  Aligned_cols=61  Identities=15%  Similarity=0.031  Sum_probs=57.3

Q ss_pred             HHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhcc
Q psy11461         56 LCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQN  116 (253)
Q Consensus        56 ~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~  116 (253)
                      .-.+..|++++|+..++++++.+|++..++..+|.+++..|++++|+..|+++++++|++.
T Consensus         4 ~~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~   64 (264)
T d1zbpa1           4 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYL   64 (264)
T ss_dssp             HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcH
Confidence            3456789999999999999999999999999999999999999999999999999999873

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.22  E-value=2.6e-06  Score=63.64  Aligned_cols=63  Identities=8%  Similarity=0.037  Sum_probs=59.6

Q ss_pred             cHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHH
Q psy11461         13 SDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKAL   75 (253)
Q Consensus        13 ~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al   75 (253)
                      ...++..+|..+...|++.+|+.++++++..+|.+..+|.+++.++..+|++.+|+..|+++.
T Consensus        66 ~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~  128 (179)
T d2ff4a2          66 KVLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVK  128 (179)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            346788999999999999999999999999999999999999999999999999999999883

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: E3 ubiquitin ligase PUB14
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.21  E-value=5.2e-07  Score=57.93  Aligned_cols=36  Identities=19%  Similarity=0.304  Sum_probs=33.5

Q ss_pred             hcCCCCCCCCCCCCCCCCcCcHHHHHHHHHHhhhcC
Q psy11461        213 KVGHFDPVTRVKLSADQLIPNFAMKEVVDNFLQEND  248 (253)
Q Consensus       213 ~~g~~DP~tr~~l~~~~l~pN~~lk~a~~~~l~~n~  248 (253)
                      .++..+|+++.+++.++++||++||++|++|+++||
T Consensus        41 ~~~~~cP~~~~~l~~~~l~pN~~L~~~I~~~~~~~~   76 (78)
T d1t1ha_          41 AGHKTCPKSQETLLHAGLTPNYVLKSLIALWCESNG   76 (78)
T ss_dssp             TTCCBCTTTCCBCSSCCCEECTTTHHHHHHHHHHSC
T ss_pred             HCCCCCCcccccCCcccccchHHHHHHHHHHHHHhC
Confidence            356689999999999999999999999999999997

>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Ubiquitin conjugation factor E4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.13  E-value=8e-07  Score=59.58  Aligned_cols=34  Identities=35%  Similarity=0.583  Sum_probs=31.5

Q ss_pred             cCCCCCCCCCCCCCCCCcCcHHHHHHHHHHhhhc
Q psy11461        214 VGHFDPVTRVKLSADQLIPNFAMKEVVDNFLQEN  247 (253)
Q Consensus       214 ~g~~DP~tr~~l~~~~l~pN~~lk~a~~~~l~~n  247 (253)
                      .++++|+||+|++.++|+||.+||++|++|+.++
T Consensus        56 ~~~~~P~~~~~l~~~~L~pN~~Lr~~I~~~~~~~   89 (98)
T d1wgma_          56 SDQTDPFNRSPLTMDQIRPNTELKEKIQRWLAER   89 (98)
T ss_dssp             TSCBCTTTCSBCCTTTSEECHHHHHHHHHHHHHS
T ss_pred             hcCCcccccccccchhhcchHHHHHHHHHHHHHH
Confidence            3568999999999999999999999999999876

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=97.84  E-value=0.00011  Score=57.15  Aligned_cols=100  Identities=17%  Similarity=0.148  Sum_probs=80.4

Q ss_pred             ccHHHHHHHHHHHHh----ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hhCHHHHHHHHHHHHhhCCCcHH
Q psy11461         12 LSDKELKDEGNRYFG----LRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLK----LKQYVHCCDDCRKALELEPSLVK   83 (253)
Q Consensus        12 ~~a~~~~~~g~~~~~----~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~l~p~~~~   83 (253)
                      .....+..+|..+..    ..+...+...+..+..  +.++.+.+++|.+|..    ..++++|+.+|.++.+.  .++.
T Consensus       140 ~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~--~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~  215 (265)
T d1ouva_         140 NDGDGCTILGSLYDAGRGTPKDLKKALASYDKACD--LKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL--ENGG  215 (265)
T ss_dssp             TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT--TCHH
T ss_pred             cccchhhhhhhhhccCCCcccccccchhhhhcccc--ccccccccchhhhcccCcccccchhhhhhhHhhhhcc--cCHH
Confidence            345667778888875    5677788888888775  4678899999999887    66899999999999886  4788


Q ss_pred             HHHHHHHHHHH----hCCHHHHHHHHHHHHhhchhc
Q psy11461         84 AQFFLGQALHE----INHYDEAVKHLQRAYDLSREQ  115 (253)
Q Consensus        84 a~~~lg~~~~~----~~~~~~A~~~~~~al~l~p~~  115 (253)
                      +++.+|.+|..    ..++++|+.+|++|...+...
T Consensus       216 a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~~~  251 (265)
T d1ouva_         216 GCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKG  251 (265)
T ss_dssp             HHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred             HHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcCHH
Confidence            99999999875    347889999999998887653

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=97.81  E-value=0.00022  Score=49.80  Aligned_cols=85  Identities=16%  Similarity=0.089  Sum_probs=68.6

Q ss_pred             hccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH----hCC
Q psy11461         26 GLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLK----LKQYVHCCDDCRKALELEPSLVKAQFFLGQALHE----INH   97 (253)
Q Consensus        26 ~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~----~~~   97 (253)
                      ...++++|+..|.++...  .++.+.+++|.+|..    ..++.+|+.+|+++.+.  .++.+.+.+|.+|..    ..+
T Consensus        35 ~~~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~Lg~~y~~G~gv~~d  110 (133)
T d1klxa_          35 SQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKN  110 (133)
T ss_dssp             TTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCC
T ss_pred             cccCHHHHHHHHhhhhcc--cchhhhhhHHHhhhhccccchhhHHHHHHHhhhhcc--CcchHHHHHHHHHHcCCccCCC
Confidence            456788999999988775  578888899988876    45788999999998875  578889999998877    458


Q ss_pred             HHHHHHHHHHHHhhchh
Q psy11461         98 YDEAVKHLQRAYDLSRE  114 (253)
Q Consensus        98 ~~~A~~~~~~al~l~p~  114 (253)
                      +.+|+..|++|.++...
T Consensus       111 ~~~A~~~~~~Aa~~G~~  127 (133)
T d1klxa_         111 EKQAVKTFEKACRLGSE  127 (133)
T ss_dssp             HHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHCCCH
Confidence            88999999998877543

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=97.10  E-value=0.0012  Score=45.81  Aligned_cols=80  Identities=19%  Similarity=0.103  Sum_probs=65.8

Q ss_pred             cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH----hCCHHHHHH
Q psy11461         28 RQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHE----INHYDEAVK  103 (253)
Q Consensus        28 g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~----~~~~~~A~~  103 (253)
                      .++++|+.+|.++.+..  ++.+..+++..  ...++++|+.+++++.+.  .++.+++.+|..|..    ..+++.|+.
T Consensus         7 kd~~~A~~~~~kaa~~g--~~~a~~~l~~~--~~~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~~~d~~~A~~   80 (133)
T d1klxa_           7 KDLKKAIQYYVKACELN--EMFGCLSLVSN--SQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQ   80 (133)
T ss_dssp             HHHHHHHHHHHHHHHTT--CTTHHHHHHTC--TTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred             cCHHHHHHHHHHHHHCC--Chhhhhhhccc--cccCHHHHHHHHhhhhcc--cchhhhhhHHHhhhhccccchhhHHHHH
Confidence            57899999999999875  45566666643  456899999999999874  689999999999886    457999999


Q ss_pred             HHHHHHhhch
Q psy11461        104 HLQRAYDLSR  113 (253)
Q Consensus       104 ~~~~al~l~p  113 (253)
                      .|+++.+...
T Consensus        81 ~~~~aa~~g~   90 (133)
T d1klxa_          81 YYSKACGLND   90 (133)
T ss_dssp             HHHHHHHTTC
T ss_pred             HHhhhhccCc
Confidence            9999988753

>d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain-like
family: MIT domain
domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.93  E-value=0.2  Score=30.71  Aligned_cols=30  Identities=27%  Similarity=0.479  Sum_probs=21.7

Q ss_pred             cHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Q psy11461         13 SDKELKDEGNRYFGLRQYEEAINCYTRAII   42 (253)
Q Consensus        13 ~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~   42 (253)
                      .|..+-..+..+.+.|+|++||+|+.+|..
T Consensus         7 ~AH~~~RrAer~l~~~rydeAIech~kA~~   36 (83)
T d2crba1           7 LAHQQSRRADRLLAAGKYEEAISCHRKATT   36 (83)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            455666777778888888888887776653

>d1wfda_ a.7.14.1 (A:) Hypothetical protein 1500032H18Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Hypothetical protein 1500032H18Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.69  E-value=0.39  Score=30.48  Aligned_cols=41  Identities=15%  Similarity=0.212  Sum_probs=28.3

Q ss_pred             CCCCCCCCc--ccHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Q psy11461          3 KSHNFTTNN--LSDKELKDEGNRYFGLRQYEEAINCYTRAIIK   43 (253)
Q Consensus         3 ~~~~~~~~~--~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~   43 (253)
                      +..++..++  ..|..+...|..+-..|+|.+|+.+|..++..
T Consensus         2 ~~~~s~~~~~~~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~   44 (93)
T d1wfda_           2 SSGSSGQDSDSTAAVAVLKRAVELDAESRYQQALVCYQEGIDM   44 (93)
T ss_dssp             CSCSSCCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CCCCCCCChHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            344455444  35566777778888888888888888887754

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.21  E-value=0.35  Score=30.81  Aligned_cols=28  Identities=14%  Similarity=-0.008  Sum_probs=25.4

Q ss_pred             CCCCCCCCCCCCCCcCcHHHHHHHHHHh
Q psy11461        217 FDPVTRVKLSADQLIPNFAMKEVVDNFL  244 (253)
Q Consensus       217 ~DP~tr~~l~~~~l~pN~~lk~a~~~~l  244 (253)
                      -=|+.|.+++..+++||..|++.|+.|.
T Consensus        57 ~CP~Cr~~~~~~~l~~n~~l~~lv~~~~   84 (97)
T d1jm7b_          57 GCPVCYTPAWIQDLKINRQLDSMIQLCS   84 (97)
T ss_dssp             BCSSSCCBCSCSSCCCCHHHHHHHHHHH
T ss_pred             cccccCCcCchhhCcccHHHHHHHHHHH
Confidence            4699999999999999999999998874

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=85.28  E-value=2.3  Score=34.59  Aligned_cols=89  Identities=15%  Similarity=0.040  Sum_probs=62.2

Q ss_pred             HHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhCCHHH
Q psy11461         21 GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDE  100 (253)
Q Consensus        21 g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~~~~~~  100 (253)
                      +..++..+....|........... .+......++...+..+++..+...+.....-.....+..|.+|.++..+|+.++
T Consensus       259 a~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~w~~~~al~~~~~~~~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~  337 (450)
T d1qsaa1         259 AWRLMGNDVTDEQAKWRDDAIMRS-QSTSLIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAE  337 (450)
T ss_dssp             HHTSCSTTCCHHHHHHHHHHHHTC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHcCchHHHHHHHHhhcccc-cchHHHHHHHHHHHHcCChHHHHHHHHhcCcccccHHHHHHHHHHHHHHcCChhh
Confidence            334445566677776666655443 3444444444455667899999888876544333457889999999999999999


Q ss_pred             HHHHHHHHHh
Q psy11461        101 AVKHLQRAYD  110 (253)
Q Consensus       101 A~~~~~~al~  110 (253)
                      |...|..+..
T Consensus       338 A~~~~~~~a~  347 (450)
T d1qsaa1         338 AKEILHQLMQ  347 (450)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHhc
Confidence            9999998865

>d2cfua2 d.157.1.13 (A:20-524) Alkylsulfatase SdsA1 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a+b)
fold: Metallo-hydrolase/oxidoreductase
superfamily: Metallo-hydrolase/oxidoreductase
family: Alkylsulfatase-like
domain: Alkylsulfatase SdsA1
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=82.53  E-value=1.8  Score=36.21  Aligned_cols=47  Identities=13%  Similarity=0.145  Sum_probs=24.9

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Q psy11461         16 ELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLK   62 (253)
Q Consensus        16 ~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~   62 (253)
                      .....+..++..|+|.-|.++...++..+|++..+...+|.+|.++|
T Consensus       432 ~~~~~a~~~~~~g~~~wa~~l~~~~~~a~p~~~~ar~l~a~~~~~l~  478 (505)
T d2cfua2         432 RLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLG  478 (505)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence            33445555555555555555555555555555555555555554443

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=82.09  E-value=0.2  Score=28.47  Aligned_cols=17  Identities=29%  Similarity=0.491  Sum_probs=15.7

Q ss_pred             CCCCCCCCCCCCCCcCc
Q psy11461        217 FDPVTRVKLSADQLIPN  233 (253)
Q Consensus       217 ~DP~tr~~l~~~~l~pN  233 (253)
                      .+|++|+|++.++|+|.
T Consensus        37 ~CP~c~~~l~~~dLipi   53 (56)
T d2baya1          37 NDPITNEPLSIEEIVEI   53 (56)
T ss_dssp             BCTTTCCBCCGGGCEEC
T ss_pred             CCCccCCcCCHHhceeC
Confidence            59999999999999985

>d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain-like
family: MIT domain
domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=81.87  E-value=1.2  Score=27.07  Aligned_cols=26  Identities=27%  Similarity=0.155  Sum_probs=17.9

Q ss_pred             HHHHHHHHHHHhhCHHHHHHHHHHHH
Q psy11461         50 YFTNRALCYLKLKQYVHCCDDCRKAL   75 (253)
Q Consensus        50 ~~~~~a~~~~~~~~~~~A~~~~~~al   75 (253)
                      .+..+|..+.+.|+|++||++.++|.
T Consensus        10 ~~~RrAer~l~~~rydeAIech~kA~   35 (83)
T d2crba1          10 QQSRRADRLLAAGKYEEAISCHRKAT   35 (83)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            45566777777777777777766554