Psyllid ID: psy114

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------61
Protein Sequence
MSLQWTLIATVLYFEMAFMLLLILPILSTQRLHKILKSKFVQGVKTQAGWYFGCILVILSLFFLDAIREMRKYASPEVKEEAHGHLDAEMQNNMKLFRAQRNFYISGFSLFLWLVIRQIIQLIAQQANLLAQNEASMNQARQAAVAAQALLDGPRGKWFGSHVWAYLTPNLLVTRSYSTRVARSFSAQNGISDLKPRTLDLAIENLPELPGQLLCAFTIGETTVTTEAIKQTNGVKCATPPTKDIPSIPVGQHNITAKLSVRSSNGPDFVTTKFMFFDCNTYSSCTQCVSSDFPCDWCVDGHRCTHDTAENCRNDILITGVSRVGPSFRSGPAFCPTIRGTDIGSQEILVPSGVKKAVKVKVHIVGQFIVQTRFVCLFNIEGRFTKVNAQLLGDVIYCDPMEFTYNSSVSNINASLAVIWGGSKPLDNPDNVHVNIYKCRDLANNCGLCLALPEKYGCGWCESSKRCEIFEQCDKGLEGDSDEIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKKDDKYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQKVVTEQGDKKD
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHcccccccEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccEEEEEccccccccccccccccccccccEEEEEccccccccccEEEEEcccccEEEEEEEEccccEEEccccccccccccccccEEEEEEEEEEEcccEEEEEEEEEEEEcccccccccccccccccccccccEEcccccccccccEEEEEEccccccccccccccccccccccccccEEEccccEEEEEEEEEEEccccccccEEEEEEEcccEEEEEEEEEccEEEEcccEEEccccccEEEEEEEEEEccccccccccccEEEEEEEcccccccccccccccccccccccccccccHHHccccccccccHHHHHHHcccHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHcccccHHHHHccEEEEEEccEEEEEEEEEEEEEccEEEcHHHHccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccEEEEEEcccccccEcccEEEEEEEcccccccccEEEEEccccccccccccccccEEEEccccccccccccccccEEEEEEEEEEccccEEEEEEEEEEEccccccHHHHcccccccccEEEcccccccccHHccccccccccccccHHHcccccccccEEEEccccccccccccccEEEEEEEEccccccccccEEEEEEccccEEEEccEEcccEEEEcccccccccccccEEEEEEEEEcccEEEccccccEEEEEEcccccccHHHHHcccccccccccccccEEEcccccccccccccccEEEcccccccccccccccHHHcccccccEEEEcEcccccccHEEEEEEEEEEccccccccccccccccEEEEEEEEcccHHHHccccccHHHHHHHHcHccHHHHHHHHHHHHHHHHHEccccccc
Coil and Loop (DISEMBL)
MSLQWTLIATVLYFEMAFMLLLILPILSTQRLHKILKSKFVQGVKTQAGWYFGCILVILSLFFLDAIREMRKYaspevkeeahgHLDAEMQNNMKLFRAQRNFYISGFSLFLWLVIRQIIQLIAQQANLLAQNEASMNQARQAAVAAQALldgprgkwfgshvwayltpnllvtrsYSTRVARSFsaqngisdlkprTLDLAIenlpelpgqllcaftigetTVTTEAIKqtngvkcatpptkdipsipvgqhnitaklsvrssngpdfvttkfmffdcntyssctqcvssdfpcdwcvdghrcthdtaencrndilitgvsrvgpsfrsgpafcptirgtdigsqeilvpsgvKKAVKVKVHIVGQFIVQTRFVCLFNIEGRFTKVNAQLLGdviycdpmeftynssvsNINASLAVIwggskpldnpdnvhvnIYKCRDlanncglclalpekygcgwcesskrceifeqcdkglegdsDEIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTeqgdkkddkyqkgdsDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQKVVTEQGDKKD
Flexible Loop (DISEMBL)
MSLQWTLIATVLYFEMAFMLLLILPILSTQRLHKILKSKFVQGVKTQAGWYFGCILVILSLFFLDAIREMRKYASPEVKEEAHGHLDAEMQNNMKLFRAQRNFYISGFSLFLWLVIRQIIQLIAQQANLLAQNEASMNQARQAAVAAQALLDGPRGKWFGSHVWAYLTPNLLVTRSYSTRVARSfsaqngisdlkpRTLDLAIENLPELPGQLLCAFTIGETTVTTEAIkqtngvkcatpptkdipsipvgQHNITAKLSVRSSNGPDFVTTKFMFFDCNTYSSCTQCVSSDFPCDWCVDGHRCTHDTAENCRNDILITGVSRVGPSFRSGPAFCPTIRGTDIGSQEILVPSGVKKAVKVKVHIVGQFIVQTRFVCLFNIEGRFTKVNAQLLGDVIYCDPMEFTYNSSVSNINASLAVIWGGSKPLDNPDNVHVNIYKCRDLANNCGLCLALPEKYGCGWCESSKRCEIFEQcdkglegdsdeiKRLKEKLSKTeeelkkektnsaalksqadsvGKEYDRLLKEHEKVQkvvteqgdkkddkyqkgdsdeikrlkeklskteeelkkektnsaalknqadsVGKEYDRLLKEHEKVqkvvteqgdkkd
Low Complexity Region (SEG)
MSLQWTLIATVLYFEMAFMLLLILPILSTQRLHKILKSKFVQGVKTQAGWYFGCILVILSLFFLDAIREMRKYASPEVKEEAHGHLDAEMQNNMKLFRAQRNFYISGFSLFLWLVIRqiiqliaqqanllaqnEASMNqarqaavaaqaLLDGPRGKWFGSHVWAYLTPNLLVTRSYSTRVARSFSAQNGISDLKPRTLDLAIENLPELPGQLLCAFTIGETTVTTEAIKQTNGVKCATPPTKDIPSIPVGQHNITAKLSVRSSNGPDFVTTKFMFFDCNTYSSCTQCVSSDFPCDWCVDGHRCTHDTAENCRNDILITGVSRVGPSFRSGPAFCPTIRGTDIGSQEILVPSGvkkavkvkvHIVGQFIVQTRFVCLFNIEGRFTKVNAQLLGDVIYCDPMEFTYNSSVSNINASLAVIWGGSKPLDNPDNVHVNIYKCRDLANNCGLCLALPEKYGCGWCESSKRCEIFEQCDKGLEGDSDEIkrlkeklskteeelkkekTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEqgdkkddkyqkgdSDEIkrlkeklskteeelkkekTNSAALKNQADSVGKEYDRLLKEHEKVQKVVTEQGDKKD
Disordered region (IsUnstruct)
**LQWTLIATVLYFEMAFMLLLILPILSTQRLHKILKSKFVQGVKTQAGWYFGCILVILSLFFLDAIREMRKY*******************NMKLFRAQRNFYISGFSLFLWLVIRQIIQLIAQQANLLAQN********QAAVAAQALLDGPRGKWFGSHVWAYLTPNLLVTRSYSTRVARSFSAQNGISDLKPRTLDLAIENLPELPGQLLCAFTIGETTVTTEAIKQTNGVKCATP***DIPSIPVGQHNITAKLSVRSSNGPDFVTTKFMFFDCNTYSSCTQCVSSDFPCDWCVDGHRCTHDTAENCRNDILITGVSRVGPSFRSGPAFCPTIRGTDIGSQEILVPSGVKKAVKVKVHIVGQFIVQTRFVCLFNIEGRFTKVNAQLLGDVIYCDPMEFTYNSSVSNINASLAVIWGGSKPLDNPDNVHVNIYKCRDLANNCGLCLALPEKYGCGWCESSKRCEIFEQCD***************************************************************************************************************************************
Disordered Region (DISOPRED)
MSLQWTLIATVLYFEMAFMLLLILPILSTQRLHKILKSKFVQGVKTQAGWYFGCILVILSLFFLDAIREMRK******************QNNMKLFRAQRNFYISGFSLFLWLVIRQIIQLIAQQANLLAQNEA***************************VWAYLTPNLLVTRSYSTRVA***********LKPRTLDLAIENLPELPGQLLCAFTIGETTVTTEAIKQTNGVKCATPPTKDIPSIPVGQHNITAKLSVRSSNGPDFVTTKFMFFDCNTYSSCTQCVSSDFPCDWCVDGHRCTHDTAENCRNDILITGVSRVGP*FRSG****PTI*G*DIGSQEILVPSGVKKAVKVKVHIVGQFIVQTRFVCLFNIEGRFTKVNAQLLGDVIYCDPMEFTYNSSVSNINASLAVIWGGSKPLDNPDNVHVNIYKCRDLANNCGLCLALPEKYGCGWCESSKRCEIFEQCDKGLEGDSDEIKRL**********************S**DSVGKEYDRLLKEH***********************************************************************************
Disordered Region (DISEMBL)
MSLQWTLIATVLYFEMAFMLLLILPILSTQRLHKILKSKFVQGVKTQAGWYFGCILVILSLFFLDAIREMRKYA*********GHLDAEMQNNMKLFRAQRNFYISGFSLFLWLVIRQIIQLIAQQANLLAQNEASMNQARQAAVAAQALLDGPRGKWFGSHVWAYLTPNLLVTRSYSTRVARSFSAQNGISDLKPRTLDLAIENLPELPGQLLCAFTIGETTVTTEAIKQTNGVKCATPPTKDIPSIPVGQHNITAKLSVRSSNGPDFVTTKFMFFDCNTYSSCTQCVSSDFPCDWCVDGHRCTHDTAENCRNDILITGVSRVGPSFRSGPAFCPTIRGTDIGSQEILVPSGVKKAVKVKVHIVGQFIVQTRFVCLFNIEGRFTKVNAQLLGDVIYCDPMEFTYNSSVSNINASLAVIWGGSKPLDNPDNVHVNIYKCRDLANNCGLCLALPEKYGCGWCESSKRCEIFEQCDKGLEGDSDEIKRLKEKLS************************KEYDRLLKEHEKVQKVV***************SDEIKRLKEKLS*************AALKNQADSVGKEYDRLLKEHEKVQK**********
Disordered Region (DISPRO)
*SLQWTLIATVLYFEMAFMLLLILPILSTQRLHKILKSKFVQGVKTQAGWYFGCILVILSLFFLDAIREMRKYASPEVKEEAHGHLDAEMQNNMKLFRAQRNFYISGFSLFLWLVIRQIIQLIAQQANLLAQNEASMNQARQAAVAAQALLDGPRGKWFGSHVWAYLTPNLLVTRSYSTRVARSFSAQNGISDLKPRTLDLAIENLPELPGQLLCAFTIGETTVTTEAIKQTNGVKCATPPTKDIPSIPVGQHNITAKLSVRSSNGPDFVTTKFMFFDCNTYSSCTQCVSSDFPCDWCVDGHRCTHDTAENCRNDILITGVSRVGPSFRSGPAFCPTIRGTDIGSQEILVPSGVKKAVKVKVHIVGQFIVQTRFVCLFNIEGRFTKVNAQLLGDVIYCDPMEFTYNSSVSNINASLAVIWGGSKPLDNPDNVHVNIYKCRDLANNCGLCLALPEKYGCGWCESSKRCEIFEQCDKGLEGDSDEIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKK*********DEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQKVVTEQ*****
Transmembrane Helix (TMHMM)
iiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSLQWTLIATVLYFEMAFMLLLILPILSTQRLHKILKSKFVQGVKTQAGWYFGCILVILSLFFLDAIREMRKYASPEVKEEAHGHLDAEMQNNMKLFRAQRNFYISGFSLFLWLVIRQIIQLIAQQANLLAQNEASMNQARQAAVAAQALLDGPRGKWFGSHVWAYLTPNLLVTRSYSTRVARSFSAQNGISDLKPRTLDLAIENLPELPGQLLCAFTIGETTVTTEAIKQTNGVKCATPPTKDIPSIPVGQHNITAKLSVRSSNGPDFVTTKFMFFDCNTYSSCTQCVSSDFPCDWCVDGHRCTHDTAENCRNDILITGVSRVGPSFRSGPAFCPTIRGTDIGSQEILVPSGVKKAVKVKVHIVGQFIVQTRFVCLFNIEGRFTKVNAQLLGDVIYCDPMEFTYNSSVSNINASLAVIWGGSKPLDNPDNVHVNIYKCRDLANNCGLCLALPEKYGCGWCESSKRCEIFEQCDKGxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxADSVGKEYDRLLKEHEKVQKVVTEQGDKKDDKYxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxHEKVQKVVTEQGDKKD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	609	2.2.26 [Sep-21-2011]
O75051	1894	Plexin-A2 OS=Homo sapiens	yes	N/A	0.415	0.133	0.320	6e-35
B0S5N4	1892	Plexin A3 OS=Danio rerio	yes	N/A	0.423	0.136	0.3	9e-35
Q9UIW2	1896	Plexin-A1 OS=Homo sapiens	no	N/A	0.412	0.132	0.306	6e-34
P70207	1894	Plexin-A2 OS=Mus musculus	yes	N/A	0.415	0.133	0.317	9e-34
P70206	1894	Plexin-A1 OS=Mus musculus	no	N/A	0.412	0.132	0.317	4e-33
Q6BEA0	1903	Plexin-A4 OS=Danio rerio	yes	N/A	0.509	0.162	0.282	5e-32
Q9HCM2	1894	Plexin-A4 OS=Homo sapiens	no	N/A	0.413	0.133	0.301	2e-31
Q80UG2	1893	Plexin-A4 OS=Mus musculus	no	N/A	0.413	0.133	0.305	9e-31
Q9V4A7	2051	Plexin-B OS=Drosophila me	no	N/A	0.415	0.123	0.302	2e-26
P70208	1872	Plexin-A3 OS=Mus musculus	no	N/A	0.413	0.134	0.272	3e-26

>sp|O75051|PLXA2_HUMAN Plexin-A2 OS=Homo sapiens GN=PLXNA2 PE=1 SV=4

 Score =  149 bits (376), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 92/287 (32%), Positives = 141/287 (49%), Gaps = 34/287 (11%)

Query: 197 RTLDLAIENLPELPGQLLCAFTIGETTVTTEAIKQTNG--VKCATPPTKDIPSIPVGQHN 254
           R L L + + P+L   + CAF        TE   Q +G  V C +P  KD+P IP+ Q  
Sbjct: 576 RLLSLVVSDAPDLSAGIACAFG-----NLTEVEGQVSGSQVICISPGPKDVPVIPLDQDW 630

Query: 255 ITAKLSVRS-SNGPDFVTTKFMFFDCNTYSSCTQCVSSDFPCDWCVDGHRCTHDTAENCR 313
              +L +RS   G  FV+T+F F++C+ +  C  CV+S F C WC   + CTHD    C 
Sbjct: 631 FGLELQLRSKETGKIFVSTEFKFYNCSAHQLCLSCVNSAFRCHWCKYRNLCTHDPT-TC- 688

Query: 314 NDILITGVSRVGPSFRSG----PAFCPTIRGTDIGSQEILVPSGVKKAVKVKVHIVGQFI 369
                        SF+ G       CP +    + ++EIL+P G  K + +K   + Q  
Sbjct: 689 -------------SFQEGRINISEDCPQL----VPTEEILIPVGEVKPITLKARNLPQPQ 731

Query: 370 VQTR-FVCLFNIEGRFTKVNA-QLLGDVIYCDPMEFTYNS-SVSNINASLAVIWGGSKPL 426
              R + C+ NI+G   +V A +     + C    + Y+   +SN+    AV+W G+  +
Sbjct: 732 SGQRGYECVLNIQGAIHRVPALRFNSSSVQCQNSSYQYDGMDISNLAVDFAVVWNGNFII 791

Query: 427 DNPDNVHVNIYKCRDLANNCGLCLALPEKYGCGWCESSKRCEIFEQC 473
           DNP ++ V++YKC     +CGLCL    K+ CGWC   +RC + + C
Sbjct: 792 DNPQDLKVHLYKCAAQRESCGLCLKADRKFECGWCSGERRCTLHQHC 838

Coreceptor for SEMA3A and SEMA6A. Necessary for signaling by SEMA6A and class 3 semaphorins and subsequent remodeling of the cytoskeleton. Plays a role in axon guidance, invasive growth and cell migration. Class 3 semaphorins bind to a complex composed of a neuropilin and a plexin. The plexin modulates the affinity of the complex for specific semaphorins, and its cytoplasmic domain is required for the activation of down-stream signaling events in the cytoplasm.
Homo sapiens (taxid: 9606)

>sp|B0S5N4|PLXA3_DANRE Plexin A3 OS=Danio rerio GN=plxna3 PE=2 SV=2

 Score =  149 bits (375), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 84/280 (30%), Positives = 143/280 (51%), Gaps = 22/280 (7%)

Query: 199 LDLAIENLPELPGQLLCAFTIGETTVTTEAIKQTNGVKCATPPTKDIPSIPVGQHN-ITA 257
           L + + N+P L   + C F   E T +   +     + C +P  +D+PS+  G  +    
Sbjct: 579 LSVKVANVPNLSAGVTCVFE--ELTESPGEVLAEGQILCMSPSLRDVPSVTQGYGDKRVV 636

Query: 258 KLSVRS-SNGPDFVTTKFMFFDCNTYSSCTQCVSSDFPCDWCVDGHRCTHDTAENCRNDI 316
           KLS++S   G  F+TT F+F++C+   SC+ CVSS FPC+WC   H CT++ AE    + 
Sbjct: 637 KLSLKSKETGLKFITTDFVFYNCSVLQSCSSCVSSPFPCNWCKYRHICTNNVAECSFQE- 695

Query: 317 LITGVSRVGPSFRSGPAFCPTIRGTDIGSQEILVPSGVKKAVKVKVHIVGQFIV-QTRFV 375
                 RV     S    CP I    + S +ILVP+G+ + + ++   + Q    Q  + 
Sbjct: 696 -----GRV-----SSAEGCPQI----LPSSDILVPAGIVRPITLRARNLPQPQSGQKNYE 741

Query: 376 CLFNIEGRFTKVNA-QLLGDVIYCDPMEFTYNSS-VSNINASLAVIWGGSKPLDNPDNVH 433
           C+FNI+G+  ++ A +     I C    + Y  + + ++    +++W G  P+D P ++ 
Sbjct: 742 CVFNIQGKVQRIPAVRFNSSCIQCQNTSYWYEGNEMGDLPVDFSIVWDGDFPIDKPSSMR 801

Query: 434 VNIYKCRDLANNCGLCLALPEKYGCGWCESSKRCEIFEQC 473
             +YKC    ++CGLCL     + CGWC + K+C + + C
Sbjct: 802 ALLYKCEAQRDSCGLCLKADSTFECGWCLADKKCLLKQHC 841

Coreceptor for class 3 semaphorins. Necessary for signaling by class 3 semaphorins and subsequent remodeling of the cytoskeleton. Plays a role in axon guidance in the developing nervous system. Class 3 semaphorins bind to a complex composed of a neuropilin and a plexin. The plexin modulates the affinity of the complex for specific semaphorins, and its cytoplasmic domain is required for the activation of down-stream signaling events in the cytoplasm.

Danio rerio (taxid: 7955)

>sp|Q9UIW2|PLXA1_HUMAN Plexin-A1 OS=Homo sapiens GN=PLXNA1 PE=1 SV=3

 Score =  146 bits (368), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 84/274 (30%), Positives = 139/274 (50%), Gaps = 23/274 (8%)

Query: 205 NLPELPGQLLCAFTIGETTVTTEAIKQTNGVKCATPPTKDIPSIPVGQHN-ITAKLSVRS 263
           N+P+L   + C+F   E    +E++ +   + C +P  +++  I  GQ +    KL ++S
Sbjct: 588 NVPDLSAGVNCSF---EDFTESESVLEDGRIHCRSPSAREVAPITRGQGDQRVVKLYLKS 644

Query: 264 -SNGPDFVTTKFMFFDCNTYSSCTQCVSSDFPCDWCVDGHRCTHDTAENCRNDILITGVS 322
              G  F +  F+F++C+ + SC  CV+  FPC WC   H CTH+ A+ C     + G  
Sbjct: 645 KETGKKFASVDFVFYNCSVHQSCLSCVNGSFPCHWCKYRHVCTHNVAD-C---AFLEGRV 700

Query: 323 RVGPSFRSGPAFCPTIRGTDIGSQEILVPSGVKKAVKVKVHIVGQFIVQTR-FVCLFNIE 381
            V          CP I    + S +I VP GV K + +    + Q     R + CLF+I 
Sbjct: 701 NVSED-------CPQI----LPSTQIYVPVGVVKPITLAARNLPQPQSGQRGYECLFHIP 749

Query: 382 GRFTKVNA-QLLGDVIYCDPMEFTY-NSSVSNINASLAVIWGGSKPLDNPDNVHVNIYKC 439
           G   +V A +     + C    ++Y  + VS++  +L+V+W G+  +DNP N+  ++YKC
Sbjct: 750 GSPARVTALRFNSSSLQCQNSSYSYEGNDVSDLPVNLSVVWNGNFVIDNPQNIQAHLYKC 809

Query: 440 RDLANNCGLCLALPEKYGCGWCESSKRCEIFEQC 473
             L  +CGLCL    ++ CGWC + +RC +   C
Sbjct: 810 PALRESCGLCLKADPRFECGWCVAERRCSLRHHC 843

Coreceptor for SEMA3A, SEMA3C, SEMA3F and SEMA6D. Necessary for signaling by class 3 semaphorins and subsequent remodeling of the cytoskeleton. Plays a role in axon guidance, invasive growth and cell migration. Class 3 semaphorins bind to a complex composed of a neuropilin and a plexin. The plexin modulates the affinity of the complex for specific semaphorins, and its cytoplasmic domain is required for the activation of down-stream signaling events in the cytoplasm.

Homo sapiens (taxid: 9606)

>sp|P70207|PLXA2_MOUSE Plexin-A2 OS=Mus musculus GN=Plxna2 PE=1 SV=2

 Score =  145 bits (366), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 91/287 (31%), Positives = 140/287 (48%), Gaps = 34/287 (11%)

Query: 197 RTLDLAIENLPELPGQLLCAFTIGETTVTTEAIKQTNG--VKCATPPTKDIPSIPVGQHN 254
           R L L + + P L   + CAF        TE   Q +G  V C +P  KD+P IP+ Q  
Sbjct: 576 RLLSLVVNDAPNLSEGIACAFG-----NLTEVEGQVSGSQVICISPGPKDVPVIPLDQDW 630

Query: 255 ITAKLSVRS-SNGPDFVTTKFMFFDCNTYSSCTQCVSSDFPCDWCVDGHRCTHDTAENCR 313
              +L +RS   G  FV+T+F F++C+ +  C  CV+S F C WC   + CTHD    C 
Sbjct: 631 FGLELQLRSKETGKIFVSTEFKFYNCSAHQLCLSCVNSAFRCHWCKYRNLCTHDPT-TC- 688

Query: 314 NDILITGVSRVGPSFRSG----PAFCPTIRGTDIGSQEILVPSGVKKAVKVKVHIVGQFI 369
                        SF+ G       CP +    + ++EIL+P G  K + +K   + Q  
Sbjct: 689 -------------SFQEGRINVSEDCPQL----VPTEEILIPVGEVKPITLKARNLPQPQ 731

Query: 370 VQTR-FVCLFNIEGRFTKVNA-QLLGDVIYCDPMEFTYNS-SVSNINASLAVIWGGSKPL 426
              R + C+ +I+G   +V A +     + C    + Y+   +SN+    AV+W G+  +
Sbjct: 732 SGQRGYECVLSIQGAVHRVPALRFNSSSVQCQNSSYQYDGMDISNLAVDFAVVWNGNFII 791

Query: 427 DNPDNVHVNIYKCRDLANNCGLCLALPEKYGCGWCESSKRCEIFEQC 473
           DNP ++ V++YKC     +CGLCL    K+ CGWC   +RC + + C
Sbjct: 792 DNPQDLKVHLYKCAAQRESCGLCLKADHKFECGWCSGERRCTLHQHC 838

Coreceptor for SEMA3A and SEMA6A. Necessary for signaling by SEMA6A and class 3 semaphorins and subsequent remodeling of the cytoskeleton. Plays a role in axon guidance, invasive growth and cell migration. Class 3 semaphorins bind to a complex composed of a neuropilin and a plexin. The plexin modulates the affinity of the complex for specific semaphorins, and its cytoplasmic domain is required for the activation of down-stream signaling events in the cytoplasm.

Mus musculus (taxid: 10090)

>sp|P70206|PLXA1_MOUSE Plexin-A1 OS=Mus musculus GN=Plxna1 PE=1 SV=1

 Score =  143 bits (360), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 87/274 (31%), Positives = 140/274 (51%), Gaps = 23/274 (8%)

Query: 205 NLPELPGQLLCAFTIGETTVTTEAIKQTNGVKCATPPTKDIPSIPVGQHN-ITAKLSVRS 263
           N+P+L   + C+F   E    TE+I +   + C +P  +++  I  GQ +    KL ++S
Sbjct: 586 NVPDLSAGVNCSF---EDFTETESILEDGRIHCHSPSAREVAPITQGQGDQRVVKLYLKS 642

Query: 264 -SNGPDFVTTKFMFFDCNTYSSCTQCVSSDFPCDWCVDGHRCTHDTAENCRNDILITGVS 322
              G  F +  F+F++C+ + SC  CV+  FPC WC   H CT++ A+ C     + G  
Sbjct: 643 KETGKKFASVDFVFYNCSVHQSCLACVNGSFPCHWCKYRHVCTNNAAD-C---AFLEG-- 696

Query: 323 RVGPSFRSGPAFCPTIRGTDIGSQEILVPSGVKKAVKVKVHIVGQFIVQTR-FVCLFNIE 381
           RV  S       CP I    + S  I VP GV K + +    + Q     R + CLF+I 
Sbjct: 697 RVNMS-----EDCPQI----LPSTHIYVPVGVVKPITLAARNLPQPQSGQRGYECLFHIP 747

Query: 382 GRFTKVNA-QLLGDVIYCDPMEFTY-NSSVSNINASLAVIWGGSKPLDNPDNVHVNIYKC 439
           G   +V A +     + C    ++Y  + VS++  +L+V+W G+  +DNP N+  ++YKC
Sbjct: 748 GSPARVTALRFNSSSLQCQNSSYSYEGNDVSDLPVNLSVVWNGNFVIDNPQNIQAHLYKC 807

Query: 440 RDLANNCGLCLALPEKYGCGWCESSKRCEIFEQC 473
             L  +CGLCL    ++ CGWC + +RC +   C
Sbjct: 808 PALRQSCGLCLKADPRFECGWCVAERRCSLRHHC 841

Coreceptor for SEMA3A, SEMA3C, SEMA3F and SEMA6D. Necessary for signaling by class 3 semaphorins and subsequent remodeling of the cytoskeleton. Plays a role in axon guidance, invasive growth and cell migration. Class 3 semaphorins bind to a complex composed of a neuropilin and a plexin. The plexin modulates the affinity of the complex for specific semaphorins, and its cytoplasmic domain is required for the activation of down-stream signaling events in the cytoplasm.

Mus musculus (taxid: 10090)

>sp|Q6BEA0|PLXA4_DANRE Plexin-A4 OS=Danio rerio GN=plxna4 PE=2 SV=1

 Score =  139 bits (351), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 98/347 (28%), Positives = 155/347 (44%), Gaps = 37/347 (10%)

Query: 199 LDLAIENLPELPGQLLCAFTIGETTVTTEAIKQTNGVKCATPPTKDIPSIPV--GQHNIT 256
           L L   N+PEL   + C F   E     + + + N + C++P  K++P I V  G H I 
Sbjct: 585 LVLEAHNVPELSAGVNCTF---EDLAEMDGLVEGNRITCSSPAEKEVPRIIVDQGDHQIV 641

Query: 257 AKLSVRSSNGPDFVTTKFMFFDCNTYSSCTQCVSSDFPCDWCVDGHRCTHDTAENCRNDI 316
                    G  F  T F+F++C+ + SC  CV S + C WC   H CTHD + +C    
Sbjct: 642 QLYLKSKETGLAFANTSFVFYNCSVHKSCLSCVGSPYQCHWCKYRHTCTHDPS-SC---- 696

Query: 317 LITGVSRVGPSFRSG----PAFCPTIRGTDIGSQEILVPSGVKKAVKVKVHIVGQFIVQT 372
                     SF+ G    P  CP +   D     ILVP  V K + ++   + Q     
Sbjct: 697 ----------SFQEGRVKQPEECPQLLPAD----RILVPVNVVKPITLRAKNLPQPQSGQ 742

Query: 373 R-FVCLFNIEGRFTKVNA-QLLGDVIYCDPMEFTYNS-SVSNINASLAVIWGGSKPLDNP 429
           R + C+  I+G   +V A +     + C    + Y+   +S++   L VIW G   +DNP
Sbjct: 743 RGYECVLTIQGVEQRVPALRFNSSSVQCQNTSYMYDGMEMSSLPVDLTVIWNGDFSIDNP 802

Query: 430 DNVHVNIYKCRDLANNCGLCLALPEKYGCGWCESSKRCEIFEQCDKG----LEGDSDEIK 485
               V++YKC     +CGLCL     +GC WC+   RC + + C       LE +    K
Sbjct: 803 AQNKVHLYKCDARRESCGLCLKADPLFGCVWCKGENRCSLKQHCSYPQSMWLEHNGINSK 862

Query: 486 RLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKV 532
               +++K    L+  +     +  + +++G E+   +K+H KV  V
Sbjct: 863 CTHPRITKI-TPLRGPREGGTLVTIRGENLGLEFSE-IKDHVKVADV 907

Involved in the development of primary sensory neurons especially in branching of the peripheral axons. Interacts with the SLIT2 signaling specifically to promote axonal branching of Rohon-Beard neurons and the trigeminal sensory ganglion neurons.

Danio rerio (taxid: 7955)

>sp|Q9HCM2|PLXA4_HUMAN Plexin-A4 OS=Homo sapiens GN=PLXNA4 PE=1 SV=4

 Score =  137 bits (346), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 86/285 (30%), Positives = 137/285 (48%), Gaps = 33/285 (11%)

Query: 199 LDLAIENLPELPGQLLCAFTIGETTVTTEAIKQTNGVKCATPPTKDIPSIPV--GQHNIT 256
           L L   N+PEL   + C F   E     + +   N ++C +P  K++P I    G H++ 
Sbjct: 577 LVLETYNVPELSAGVNCTF---EDLSEMDGLVVGNQIQCYSPAAKEVPRIITENGDHHV- 632

Query: 257 AKLSVRS-SNGPDFVTTKFMFFDCNTYSSCTQCVSSDFPCDWCVDGHRCTHDTAENCRND 315
            +L ++S   G  F +T F+F++C+ ++SC  CV S + C WC   H CTHD  + C   
Sbjct: 633 VQLQLKSKETGMTFASTSFVFYNCSVHNSCLSCVESPYRCHWCKYRHVCTHD-PKTC--- 688

Query: 316 ILITGVSRVGPSFRSG----PAFCPTIRGTDIGSQEILVPSGVKKAVKVKVHIVGQFIVQ 371
                      SF+ G    P  CP +   D    +ILVP  V K + +K   + Q    
Sbjct: 689 -----------SFQEGRVKLPEDCPQLLRVD----KILVPVEVIKPITLKAKNLPQPQSG 733

Query: 372 TR-FVCLFNIEGRFTKVNA-QLLGDVIYCDPMEFTYNS-SVSNINASLAVIWGGSKPLDN 428
            R + C+ NI+G   +V A +     + C    ++Y    ++N+   L V+W G   +DN
Sbjct: 734 QRGYECILNIQGSEQRVPALRFNSSSVQCQNTSYSYEGMEINNLPVELTVVWNGHFNIDN 793

Query: 429 PDNVHVNIYKCRDLANNCGLCLALPEKYGCGWCESSKRCEIFEQC 473
           P    V++YKC  +  +CGLCL     + CGWC+   +C + + C
Sbjct: 794 PAQNKVHLYKCGAMRESCGLCLKADPDFACGWCQGPGQCTLRQHC 838

Coreceptor for SEMA3A. Necessary for signaling by class 3 semaphorins and subsequent remodeling of the cytoskeleton. Plays a role in axon guidance in the developing nervous system. Class 3 semaphorins bind to a complex composed of a neuropilin and a plexin. The plexin modulates the affinity of the complex for specific semaphorins, and its cytoplasmic domain is required for the activation of down-stream signaling events in the cytoplasm.

Homo sapiens (taxid: 9606)

>sp|Q80UG2|PLXA4_MOUSE Plexin-A4 OS=Mus musculus GN=Plxna4 PE=1 SV=3

 Score =  135 bits (340), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 87/285 (30%), Positives = 136/285 (47%), Gaps = 33/285 (11%)

Query: 199 LDLAIENLPELPGQLLCAFTIGETTVTTEAIKQTNGVKCATPPTKDIPSIPV--GQHNIT 256
           L L   N+PEL   + C F   E     + +   N ++C +P  K++P I    G H++ 
Sbjct: 576 LVLETYNVPELSAGVNCTF---EDLSEMDGLVIGNQIQCYSPAAKEVPRIITENGDHHV- 631

Query: 257 AKLSVRS-SNGPDFVTTKFMFFDCNTYSSCTQCVSSDFPCDWCVDGHRCTHDTAENCRND 315
            +L ++S   G  F +T F+F++C+ ++SC  CV S + C WC   H CTHD    C   
Sbjct: 632 VQLQLKSKETGMTFASTSFVFYNCSVHNSCLSCVESPYRCHWCKYRHVCTHD-PNTC--- 687

Query: 316 ILITGVSRVGPSFRSG----PAFCPTIRGTDIGSQEILVPSGVKKAVKVKVHIVGQFIVQ 371
                      SF+ G    P  CP +   D    +ILVP  V K + +K   + Q    
Sbjct: 688 -----------SFQEGRVKLPEDCPQLLRVD----KILVPVEVIKPITLKAKNLPQPQSG 732

Query: 372 TR-FVCLFNIEGRFTKVNA-QLLGDVIYCDPMEFTYNS-SVSNINASLAVIWGGSKPLDN 428
            R + C+ NI+G   +V A +     + C    ++Y    ++N+   L V+W G   +DN
Sbjct: 733 QRGYECILNIQGIEQRVPALRFNSSSVQCQNTSYSYEGMEINNLPVELTVVWNGHFNIDN 792

Query: 429 PDNVHVNIYKCRDLANNCGLCLALPEKYGCGWCESSKRCEIFEQC 473
           P    V +YKC  +  +CGLCL     + CGWC+S  +C + + C
Sbjct: 793 PAQNKVYLYKCGAMRESCGLCLKADPDFECGWCQSPGQCTLRQHC 837

Coreceptor for SEMA3A. Necessary for signaling by class 3 semaphorins and subsequent remodeling of the cytoskeleton. Plays a role in axon guidance in the developing nervous system. Class 3 semaphorins bind to a complex composed of a neuropilin and a plexin. The plexin modulates the affinity of the complex for specific semaphorins, and its cytoplasmic domain is required for the activation of down-stream signaling events in the cytoplasm.

Mus musculus (taxid: 10090)

>sp|Q9V4A7|PLXB_DROME Plexin-B OS=Drosophila melanogaster GN=plexB PE=1 SV=2

 Score =  121 bits (303), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 86/284 (30%), Positives = 133/284 (46%), Gaps = 31/284 (10%)

Query: 199 LDLAIENLPE-LPGQLLCAFTIGETTVTTEAIKQTNGVKCATPPTKDIPSIPVGQHNITA 257
           L L I  LPE    +  C F  G +T     I + NG+ CATPP  + P IP    +I  
Sbjct: 605 LHLIIRTLPEPFNAKYRCVF--GNSTPIDAEILE-NGLGCATPPLDERPLIPTNTDHILV 661

Query: 258 KLSVRSS-NGPDFVTTKFMFFDCNTYSSCTQCVSSDFPCDWCVDGHRCTHDTAENCRNDI 316
            LSVRSS    DFV+  F FFDC+ + +C +C+ S + C+WC+  ++C H + + CRN  
Sbjct: 662 PLSVRSSETNKDFVSRNFAFFDCSHHGNCQECLQSSWGCNWCIFDNKCVHKSLQ-CRN-- 718

Query: 317 LITGVSRVGPSFRSGPAFCPTIRGTDIGSQEILVPSGVKKAVKVKV-HIVGQFIVQTRFV 375
           +   VS VG         CP ++       EIL+P  V   +++++ ++         F+
Sbjct: 719 IENAVSTVG--------HCPHLKK---NRPEILLPVRVPIEIRLEIENLPKPKSAHAGFL 767

Query: 376 CLFNIEGRFTKVNAQLLGD-VIYCDPMEFTYNSSVSNINASLAVIWGGSKPLDNPDNVHV 434
           C  +IE     + A +  + ++ C+   + Y  +     A + V W     +   D   V
Sbjct: 768 CTIHIEAAQMLLPAHVESNKIVVCEKTPYFYEINTHEYQAKVVVTWNFQHYV---DTAIV 824

Query: 435 NIYKCRDLAN-----NCGLCLALPEKYGCGWCESSKRCEIFEQC 473
            +YKC  L +     +C LC+    KY C WC +S  C   E C
Sbjct: 825 TLYKCDVLGSHREHPDCSLCVTRDPKYKCAWCSNS--CVYNETC 866

Involved in peripheral and central nervous system axon guidance. Acts as a receptor for Sema-2a and seems to transduce signal by suppressing Rac activity and enhancing Rho activity.

Drosophila melanogaster (taxid: 7227)

>sp|P70208|PLXA3_MOUSE Plexin-A3 OS=Mus musculus GN=Plxna3 PE=1 SV=2

 Score =  120 bits (301), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 78/286 (27%), Positives = 131/286 (45%), Gaps = 34/286 (11%)

Query: 199 LDLAIENLPELPGQLLCAFTIGETTVTTEAIKQTNG-VKCATPPTKDIPSIPVGQ---HN 254
           L +A+ N+P+L   + C+F   E    +EAI   +G ++C +P  +++ ++  G    H 
Sbjct: 559 LTVAMRNVPDLSVGVSCSF---EEVTESEAILLPSGELRCPSPSLQELQTLTRGHGATHT 615

Query: 255 ITAKLSVRSSNGPDFVTTKFMFFDCNTYSSCTQCVSSDFPCDWCVDGHRCTHDTAENCRN 314
           +  +L +    G  F    F+F++C+   SC  CV S +PC WC   H CT    E C  
Sbjct: 616 VRLQL-LSMETGVRFAGVDFVFYNCSALQSCMSCVGSPYPCHWCKYRHVCTSHPHE-C-- 671

Query: 315 DILITGVSRVGPSFRSG----PAFCPTIRGTDIGSQEILVPSGVKKAVKVKVHIVGQFIV 370
                       SF+ G    P  CP I    +   ++L+P GV + + ++   + Q   
Sbjct: 672 ------------SFQEGRVHSPEGCPEI----LPQGDLLIPVGVMQPLTLRAKNLPQPQS 715

Query: 371 -QTRFVCLFNIEGRFTKVNA-QLLGDVIYCDPMEFTYNSS-VSNINASLAVIWGGSKPLD 427
            Q  + C+  ++GR  +V A +     + C    + Y      +     +V+W G  P+D
Sbjct: 716 GQKNYECVVRVQGRQHRVPAVRFNSSSVQCQNASYFYEGDEFGDTELDFSVVWDGDFPID 775

Query: 428 NPDNVHVNIYKCRDLANNCGLCLALPEKYGCGWCESSKRCEIFEQC 473
            P +    +YKC     +CGLCL    ++ CGWC S  RC++   C
Sbjct: 776 KPPSFRALLYKCWAQRPSCGLCLKADPRFNCGWCISEHRCQLRAHC 821

Coreceptor for SEMA3A and SEMA3F. Necessary for signaling by class 3 semaphorins and subsequent remodeling of the cytoskeleton. Plays a role in axon guidance in the developing nervous system. Regulates the migration of sympathetic neurons, but not of neural crest precursors. Required for normal dendrite spine morphology in pyramidal neurons. May play a role in regulating semaphorin-mediated programmed cell death in the developing nervous system. Class 3 semaphorins bind to a complex composed of a neuropilin and a plexin. The plexin modulates the affinity of the complex for specific semaphorins, and its cytoplasmic domain is required for the activation of down-stream signaling events in the cytoplasm.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	609
91092226	1915	PREDICTED: similar to plexin A CG11081-P	0.459	0.146	0.725	1e-127
357624684	1898	hypothetical protein KGM_01509 [Danaus p	0.467	0.150	0.715	1e-127
242004992	1919	Plexin-A1 precursor, putative [Pediculus	0.459	0.145	0.707	1e-125
345488846	1494	PREDICTED: plexin-A4-like [Nasonia vitri	0.456	0.186	0.717	1e-125
307207212	1442	Plexin-A4 [Harpegnathos saltator]	0.458	0.193	0.708	1e-125
322797388	1477	hypothetical protein SINV_15044 [Solenop	0.456	0.188	0.707	1e-124
332021002	1442	Plexin-A4 [Acromyrmex echinatior]	0.456	0.192	0.707	1e-124
307174551	473	Plexin-A2 [Camponotus floridanus]	0.456	0.587	0.703	1e-120
383861894	1927	PREDICTED: plexin-A4-like [Megachile rot	0.454	0.143	0.691	1e-119
110750043	1932	PREDICTED: plexin-A4 [Apis mellifera]	0.458	0.144	0.679	1e-119

>gi|91092226|ref|XP_970548.1| PREDICTED: similar to plexin A CG11081-PA [Tribolium castaneum] gi|270015104|gb|EFA11552.1| plexin A [Tribolium castaneum]

 Score =  463 bits (1192), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 203/280 (72%), Positives = 233/280 (83%)

Query: 197 RTLDLAIENLPELPGQLLCAFTIGETTVTTEAIKQTNGVKCATPPTKDIPSIPVGQHNIT 256
           RTLDL I+NLP L G  LCAFT+ +  + T A ++ +GV C TP T  +PSIP GQH+ T
Sbjct: 555 RTLDLIIDNLPSLSGHFLCAFTVLDKPLITNATRKGSGVNCTTPRTDLLPSIPPGQHHFT 614

Query: 257 AKLSVRSSNGPDFVTTKFMFFDCNTYSSCTQCVSSDFPCDWCVDGHRCTHDTAENCRNDI 316
           AKLSVR ++GPDFV T F FFDCNTYSSCTQCVSS FPCDWCVDGHRCTHDTAENCRNDI
Sbjct: 615 AKLSVRMTSGPDFVATNFTFFDCNTYSSCTQCVSSSFPCDWCVDGHRCTHDTAENCRNDI 674

Query: 317 LITGVSRVGPSFRSGPAFCPTIRGTDIGSQEILVPSGVKKAVKVKVHIVGQFIVQTRFVC 376
           L+TGVSR GPS+RSGPAFCPTI  T   S EILV SG+KKA+KVKVHI+GQFIVQTRFVC
Sbjct: 675 LVTGVSRAGPSYRSGPAFCPTINATVGNSPEILVASGIKKAIKVKVHIIGQFIVQTRFVC 734

Query: 377 LFNIEGRFTKVNAQLLGDVIYCDPMEFTYNSSVSNINASLAVIWGGSKPLDNPDNVHVNI 436
            FNIEGR T VNAQLLGD IYCDPMEF+Y S   NI A+ AVIWGGSKPLDNPDN+H+ I
Sbjct: 735 QFNIEGRVTSVNAQLLGDTIYCDPMEFSYTSRAPNITATFAVIWGGSKPLDNPDNIHIVI 794

Query: 437 YKCRDLANNCGLCLALPEKYGCGWCESSKRCEIFEQCDKG 476
           Y+CRD+A+NCG+CLAL +KY CGWC+SS RCE+ +QC++G
Sbjct: 795 YRCRDMADNCGMCLALAKKYDCGWCQSSDRCEVKDQCERG 834

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357624684|gb|EHJ75370.1| hypothetical protein KGM_01509 [Danaus plexippus]

 Score =  461 bits (1187), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 204/285 (71%), Positives = 229/285 (80%)

Query: 189 NGISDLKPRTLDLAIENLPELPGQLLCAFTIGETTVTTEAIKQTNGVKCATPPTKDIPSI 248
           N +     RTLDL IENLP L GQ LCAFT  + T+ T A +  NGV C TP T  +PSI
Sbjct: 542 NQLQRTTARTLDLLIENLPTLNGQFLCAFTALDRTLITNATRTHNGVNCTTPRTDTLPSI 601

Query: 249 PVGQHNITAKLSVRSSNGPDFVTTKFMFFDCNTYSSCTQCVSSDFPCDWCVDGHRCTHDT 308
           P GQH+ TAKLSVR++ GPDFV T F FFDCNTYSSCTQCVSS FPCDWCVDGHRCTHDT
Sbjct: 602 PAGQHHFTAKLSVRTTQGPDFVATNFTFFDCNTYSSCTQCVSSSFPCDWCVDGHRCTHDT 661

Query: 309 AENCRNDILITGVSRVGPSFRSGPAFCPTIRGTDIGSQEILVPSGVKKAVKVKVHIVGQF 368
           AENCRNDIL+TGVSR+GPS+RSGP FCPTI  T  G+ EILVPSGVK+A+KVKVHI+GQF
Sbjct: 662 AENCRNDILVTGVSRIGPSYRSGPGFCPTINSTSDGTNEILVPSGVKRAIKVKVHIIGQF 721

Query: 369 IVQTRFVCLFNIEGRFTKVNAQLLGDVIYCDPMEFTYNSSVSNINASLAVIWGGSKPLDN 428
           IVQTRFVC FNIEGR   V AQLL D IYC+ +EFTY S   NI AS AVIWGGSKPLDN
Sbjct: 722 IVQTRFVCQFNIEGRVNHVGAQLLADTIYCEAVEFTYTSRAPNITASFAVIWGGSKPLDN 781

Query: 429 PDNVHVNIYKCRDLANNCGLCLALPEKYGCGWCESSKRCEIFEQC 473
           PDN H+ IY+C D+A+NCG+CLALPEK+GCGWC+ S RCE+ EQC
Sbjct: 782 PDNTHILIYRCNDMADNCGICLALPEKFGCGWCQGSDRCEVQEQC 826

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242004992|ref|XP_002423359.1| Plexin-A1 precursor, putative [Pediculus humanus corporis] gi|212506389|gb|EEB10621.1| Plexin-A1 precursor, putative [Pediculus humanus corporis]

 Score =  456 bits (1172), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 198/280 (70%), Positives = 230/280 (82%)

Query: 197 RTLDLAIENLPELPGQLLCAFTIGETTVTTEAIKQTNGVKCATPPTKDIPSIPVGQHNIT 256
           RTL+L I+NLP LPGQ LCAFT  +  + T A +++ GV C TP T  +PSIP GQH+  
Sbjct: 560 RTLELVIDNLPTLPGQFLCAFTALDKVLITNATRKSYGVNCTTPRTDLLPSIPAGQHHFV 619

Query: 257 AKLSVRSSNGPDFVTTKFMFFDCNTYSSCTQCVSSDFPCDWCVDGHRCTHDTAENCRNDI 316
           ++LSVR ++GPDFV T F FFDCNTYSSCTQCVSS FPCDWCVDGHRCTHDTAENCRNDI
Sbjct: 620 SRLSVRMTSGPDFVQTNFTFFDCNTYSSCTQCVSSMFPCDWCVDGHRCTHDTAENCRNDI 679

Query: 317 LITGVSRVGPSFRSGPAFCPTIRGTDIGSQEILVPSGVKKAVKVKVHIVGQFIVQTRFVC 376
           L+TGVSR+GPS+RSGP FCPTI  T  GS EIL PSG+KK +KVKVHI+GQFIVQTRFVC
Sbjct: 680 LVTGVSRIGPSYRSGPGFCPTINATAEGSPEILAPSGMKKVIKVKVHIIGQFIVQTRFVC 739

Query: 377 LFNIEGRFTKVNAQLLGDVIYCDPMEFTYNSSVSNINASLAVIWGGSKPLDNPDNVHVNI 436
            FNIEGR T VNA+LLGD IYC+ MEF+Y S   NI    AVIWGGSKPLDNPDNVH+ I
Sbjct: 740 QFNIEGRVTHVNARLLGDTIYCENMEFSYTSRAPNITVPFAVIWGGSKPLDNPDNVHIVI 799

Query: 437 YKCRDLANNCGLCLALPEKYGCGWCESSKRCEIFEQCDKG 476
           Y+CRD+A+NCG+CLAL EKY CGWC+S+ RCE+ +QCD+G
Sbjct: 800 YRCRDMADNCGMCLALSEKYECGWCQSADRCEVKDQCDQG 839

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345488846|ref|XP_001601211.2| PREDICTED: plexin-A4-like [Nasonia vitripennis]

 Score =  455 bits (1171), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 201/280 (71%), Positives = 232/280 (82%), Gaps = 2/280 (0%)

Query: 197 RTLDLAIENLPELPGQLLCAFTIGETTVTTEAIKQTNGVKCATPPTKDIPSIPVGQHNIT 256
           RTL+LAIENLP LPGQ LCAF+  + T+ T A +++ GV C TP T  +P IP GQH+ T
Sbjct: 137 RTLELAIENLPSLPGQFLCAFSALDKTLITNATRKSYGVNCTTPRTDLLPPIPQGQHHFT 196

Query: 257 AKLSVRSSNGPDFVTTKFMFFDCNTYSSCTQCVSSDFPCDWCVDGHRCTHDTAENCRNDI 316
           AKLSVR +NGPD V T F FFDC+T+SSCTQCVSS+FPCDWCVDGHRCTHDTAENCRNDI
Sbjct: 197 AKLSVRMTNGPDLVATDFTFFDCSTHSSCTQCVSSNFPCDWCVDGHRCTHDTAENCRNDI 256

Query: 317 LITGVSRVGPSFRSGPAFCPTIRGTDIGSQEILVPSGVKKAVKVKVHIVGQFIVQTRFVC 376
           L+TGVSR+GPS+RSGPAFCPTI  TD  S+EILV SG+KK ++VKVHI+GQFI+QTRFVC
Sbjct: 257 LVTGVSRMGPSYRSGPAFCPTINATD--SKEILVSSGIKKTIRVKVHIIGQFIIQTRFVC 314

Query: 377 LFNIEGRFTKVNAQLLGDVIYCDPMEFTYNSSVSNINASLAVIWGGSKPLDNPDNVHVNI 436
            FNIEGR T VNA+LL D IYCD  EF+Y S   NI    AVIWGGSKPLDNPDN+HV I
Sbjct: 315 QFNIEGRVTSVNARLLADTIYCDDTEFSYTSRQPNITVPFAVIWGGSKPLDNPDNIHVVI 374

Query: 437 YKCRDLANNCGLCLALPEKYGCGWCESSKRCEIFEQCDKG 476
           Y+CRD+A+NCG+CLAL EKYGCGWC +S RCE+ EQCDKG
Sbjct: 375 YRCRDMADNCGMCLALAEKYGCGWCMTSDRCEVKEQCDKG 414

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307207212|gb|EFN85002.1| Plexin-A4 [Harpegnathos saltator]

 Score =  454 bits (1168), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 199/281 (70%), Positives = 232/281 (82%), Gaps = 2/281 (0%)

Query: 197 RTLDLAIENLPELPGQLLCAFTIGETTVTTEAIKQTNGVKCATPPTKDIPSIPVGQHNIT 256
           RTL+L IENLP L GQ LCAF+  + T+ T A +++ GV C TP T  +PSIP G+H+ T
Sbjct: 86  RTLELVIENLPTLSGQFLCAFSALDKTLITNASRKSYGVNCTTPRTDLLPSIPPGRHHFT 145

Query: 257 AKLSVRSSNGPDFVTTKFMFFDCNTYSSCTQCVSSDFPCDWCVDGHRCTHDTAENCRNDI 316
           AKLSVR +NGPD V T F FFDCNTYSSCTQCVSS FPCDWCVDGHRCTHDTAENCRNDI
Sbjct: 146 AKLSVRMTNGPDLVATNFTFFDCNTYSSCTQCVSSSFPCDWCVDGHRCTHDTAENCRNDI 205

Query: 317 LITGVSRVGPSFRSGPAFCPTIRGTDIGSQEILVPSGVKKAVKVKVHIVGQFIVQTRFVC 376
           L+TGVSR+GPS+RSGP FCPTI  TD  SQEILV SG+KKA++VKVHI+GQFI+QTRFVC
Sbjct: 206 LVTGVSRMGPSYRSGPGFCPTINATD--SQEILVSSGIKKAIRVKVHIIGQFIIQTRFVC 263

Query: 377 LFNIEGRFTKVNAQLLGDVIYCDPMEFTYNSSVSNINASLAVIWGGSKPLDNPDNVHVNI 436
            FNIEGR T VNA+LL D IYCD  EF+Y S   NI    AVIWGGSKPLDNPDN+H+ I
Sbjct: 264 QFNIEGRVTSVNARLLADTIYCDDTEFSYTSRAPNITVPFAVIWGGSKPLDNPDNIHLVI 323

Query: 437 YKCRDLANNCGLCLALPEKYGCGWCESSKRCEIFEQCDKGL 477
           Y+CRD+A+NCG+CLALP KYGCGWC++S RCE+ +QCD+G+
Sbjct: 324 YRCRDMADNCGMCLALPTKYGCGWCQTSDRCEVRDQCDRGV 364

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322797388|gb|EFZ19500.1| hypothetical protein SINV_15044 [Solenopsis invicta]

 Score =  452 bits (1163), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 198/280 (70%), Positives = 231/280 (82%), Gaps = 2/280 (0%)

Query: 197 RTLDLAIENLPELPGQLLCAFTIGETTVTTEAIKQTNGVKCATPPTKDIPSIPVGQHNIT 256
           RTL+L IENLP L GQ LCAF+  + T+ T A +++ GV C TP T  +PSIP G+H+ T
Sbjct: 121 RTLELVIENLPTLSGQFLCAFSALDKTLITNASRKSYGVNCTTPRTDLLPSIPPGRHHFT 180

Query: 257 AKLSVRSSNGPDFVTTKFMFFDCNTYSSCTQCVSSDFPCDWCVDGHRCTHDTAENCRNDI 316
           AKLSVR +NGPD V T F FFDCNTYSSCTQCVSS FPCDWCVDGHRCTHDTAENCRNDI
Sbjct: 181 AKLSVRMTNGPDLVATNFTFFDCNTYSSCTQCVSSSFPCDWCVDGHRCTHDTAENCRNDI 240

Query: 317 LITGVSRVGPSFRSGPAFCPTIRGTDIGSQEILVPSGVKKAVKVKVHIVGQFIVQTRFVC 376
           L+TGVSR+GPS+RSGP FCPTI  T+  SQEILV SG+KKA++VKVHI+GQFI+QTRFVC
Sbjct: 241 LVTGVSRMGPSYRSGPGFCPTINATE--SQEILVSSGIKKAIRVKVHIIGQFIIQTRFVC 298

Query: 377 LFNIEGRFTKVNAQLLGDVIYCDPMEFTYNSSVSNINASLAVIWGGSKPLDNPDNVHVNI 436
            FNIEGR T VNA+LL D IYC+  EF+Y S   NI    AVIWGGSKPLDNPDN+H+ I
Sbjct: 299 QFNIEGRVTSVNARLLADTIYCEETEFSYTSRAPNITVPFAVIWGGSKPLDNPDNIHLVI 358

Query: 437 YKCRDLANNCGLCLALPEKYGCGWCESSKRCEIFEQCDKG 476
           Y+CRD+A+NCG+CLALP KYGCGWC+SS RCE+ +QCD+G
Sbjct: 359 YRCRDMADNCGMCLALPTKYGCGWCQSSDRCEVKDQCDRG 398

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332021002|gb|EGI61395.1| Plexin-A4 [Acromyrmex echinatior]

 Score =  452 bits (1162), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 198/280 (70%), Positives = 231/280 (82%), Gaps = 2/280 (0%)

Query: 197 RTLDLAIENLPELPGQLLCAFTIGETTVTTEAIKQTNGVKCATPPTKDIPSIPVGQHNIT 256
           RTL+L IENLP L GQ LCAF+  + T+ T A +++ GV C TP T  +PSIP G+H+ T
Sbjct: 86  RTLELVIENLPTLSGQFLCAFSALDKTLITNASRKSYGVNCTTPRTDLLPSIPPGRHHFT 145

Query: 257 AKLSVRSSNGPDFVTTKFMFFDCNTYSSCTQCVSSDFPCDWCVDGHRCTHDTAENCRNDI 316
           AKLSVR +NGPD V T F FFDCNTYSSCTQCVSS FPCDWCVDGHRCTHDTAENCRNDI
Sbjct: 146 AKLSVRMTNGPDLVATNFTFFDCNTYSSCTQCVSSSFPCDWCVDGHRCTHDTAENCRNDI 205

Query: 317 LITGVSRVGPSFRSGPAFCPTIRGTDIGSQEILVPSGVKKAVKVKVHIVGQFIVQTRFVC 376
           L+TGVSR+GPS+RSGP FCPTI  T+  SQEILV SG+KKA++VKVHI+GQFI+QTRFVC
Sbjct: 206 LVTGVSRMGPSYRSGPGFCPTINATE--SQEILVSSGIKKAIRVKVHIIGQFIIQTRFVC 263

Query: 377 LFNIEGRFTKVNAQLLGDVIYCDPMEFTYNSSVSNINASLAVIWGGSKPLDNPDNVHVNI 436
            FNIEGR T VNA+LL D IYC+  EF+Y S   NI    AVIWGGSKPLDNPDN+H+ I
Sbjct: 264 QFNIEGRVTSVNARLLADTIYCEETEFSYTSRAPNITVPFAVIWGGSKPLDNPDNIHLVI 323

Query: 437 YKCRDLANNCGLCLALPEKYGCGWCESSKRCEIFEQCDKG 476
           Y+CRD+A+NCG+CLALP KYGCGWC+SS RCE+ +QCD+G
Sbjct: 324 YRCRDMADNCGMCLALPTKYGCGWCQSSDRCEVKDQCDRG 363

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307174551|gb|EFN65001.1| Plexin-A2 [Camponotus floridanus]

 Score =  439 bits (1128), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 197/280 (70%), Positives = 230/280 (82%), Gaps = 2/280 (0%)

Query: 197 RTLDLAIENLPELPGQLLCAFTIGETTVTTEAIKQTNGVKCATPPTKDIPSIPVGQHNIT 256
           RTL+L IENLP L GQ LCAF+  + T+ T A +++ GV C TP T  +PSIP  +H+ T
Sbjct: 152 RTLELVIENLPTLSGQFLCAFSALDKTLITNASRKSYGVNCTTPRTDLLPSIPPVRHHFT 211

Query: 257 AKLSVRSSNGPDFVTTKFMFFDCNTYSSCTQCVSSDFPCDWCVDGHRCTHDTAENCRNDI 316
           AKLSVR +NGPD V T F FFDCNTYSSCTQCVSS FPCDWCVDGHRCTHDTAENCRNDI
Sbjct: 212 AKLSVRMTNGPDLVATNFTFFDCNTYSSCTQCVSSSFPCDWCVDGHRCTHDTAENCRNDI 271

Query: 317 LITGVSRVGPSFRSGPAFCPTIRGTDIGSQEILVPSGVKKAVKVKVHIVGQFIVQTRFVC 376
           L+TGVSR+GPS+RSGP FCPTI  T+  SQEILV SG+KKA++VKVHI+GQFI+QTRFVC
Sbjct: 272 LVTGVSRMGPSYRSGPGFCPTINATE--SQEILVSSGIKKAIRVKVHIIGQFIIQTRFVC 329

Query: 377 LFNIEGRFTKVNAQLLGDVIYCDPMEFTYNSSVSNINASLAVIWGGSKPLDNPDNVHVNI 436
            FNIEGR T VNA+LL D IYC+  EF+Y S   NI    AVIWGGSKPLDNPDN+H+ I
Sbjct: 330 QFNIEGRVTSVNARLLADTIYCEETEFSYTSRAPNITVPFAVIWGGSKPLDNPDNIHLVI 389

Query: 437 YKCRDLANNCGLCLALPEKYGCGWCESSKRCEIFEQCDKG 476
           Y+CRD+A+NCG+CLALP KYGCGWC+SS RCE+ +QCD+G
Sbjct: 390 YRCRDMADNCGMCLALPTKYGCGWCQSSDRCEVKDQCDRG 429

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383861894|ref|XP_003706419.1| PREDICTED: plexin-A4-like [Megachile rotundata]

 Score =  436 bits (1121), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 193/279 (69%), Positives = 224/279 (80%), Gaps = 2/279 (0%)

Query: 197 RTLDLAIENLPELPGQLLCAFTIGETTVTTEAIKQTNGVKCATPPTKDIPSIPVGQHNIT 256
           RTL+L IENLP L GQ LCAF+  + T+ T A +++ GV C TP T  +PSIP GQH+ T
Sbjct: 570 RTLELVIENLPTLSGQFLCAFSTLDKTLITNASRKSFGVNCTTPRTDLLPSIPPGQHHFT 629

Query: 257 AKLSVRSSNGPDFVTTKFMFFDCNTYSSCTQCVSSDFPCDWCVDGHRCTHDTAENCRNDI 316
           AKLSVR +NGPD V T F FFDCNTYSSCTQCVSS FPCDWCVDGHRCTHDTAENCRNDI
Sbjct: 630 AKLSVRMTNGPDLVDTNFTFFDCNTYSSCTQCVSSSFPCDWCVDGHRCTHDTAENCRNDI 689

Query: 317 LITGVSRVGPSFRSGPAFCPTIRGTDIGSQEILVPSGVKKAVKVKVHIVGQFIVQTRFVC 376
           L+TGVSR+GPS+RSGPAFCPT+  T  GS EILV +GV  A+KVKVHI+GQFIVQTRFVC
Sbjct: 690 LVTGVSRMGPSYRSGPAFCPTLNAT--GSPEILVSAGVSTAIKVKVHIIGQFIVQTRFVC 747

Query: 377 LFNIEGRFTKVNAQLLGDVIYCDPMEFTYNSSVSNINASLAVIWGGSKPLDNPDNVHVNI 436
            FNIEGR T VNA+LL D IYCD  EF+Y S  +NI    AVIWGGSKPLDNP N+H+ I
Sbjct: 748 QFNIEGRVTSVNARLLADTIYCDETEFSYTSRAANITVPFAVIWGGSKPLDNPQNLHLVI 807

Query: 437 YKCRDLANNCGLCLALPEKYGCGWCESSKRCEIFEQCDK 475
           Y+CRD+A NCG+CLAL  KY CGWC+S+ RCE+ + C++
Sbjct: 808 YRCRDMAENCGMCLALAPKYDCGWCQSTDRCEVKDNCER 846

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|110750043|ref|XP_394261.3| PREDICTED: plexin-A4 [Apis mellifera]

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 191/281 (67%), Positives = 225/281 (80%), Gaps = 2/281 (0%)

Query: 197 RTLDLAIENLPELPGQLLCAFTIGETTVTTEAIKQTNGVKCATPPTKDIPSIPVGQHNIT 256
           RTL+L IENLP L GQ LCAF+  + T+ T A +++ GV C TP T  +PSIP GQH+ T
Sbjct: 576 RTLELVIENLPTLSGQFLCAFSTLDKTLITNASRKSFGVNCTTPRTDLLPSIPQGQHHFT 635

Query: 257 AKLSVRSSNGPDFVTTKFMFFDCNTYSSCTQCVSSDFPCDWCVDGHRCTHDTAENCRNDI 316
           AKLSVR +NGPD V T F FFDCNTYSSCT+CVSS FPCDWCVDGHRCTHDTAENCRNDI
Sbjct: 636 AKLSVRMTNGPDLVDTNFTFFDCNTYSSCTKCVSSSFPCDWCVDGHRCTHDTAENCRNDI 695

Query: 317 LITGVSRVGPSFRSGPAFCPTIRGTDIGSQEILVPSGVKKAVKVKVHIVGQFIVQTRFVC 376
           L+TG+SR GPS+RSGPAFCPT+  TD  SQEILV SGVKK ++VKVHI+GQFIVQTRFVC
Sbjct: 696 LVTGISRTGPSYRSGPAFCPTLNATD--SQEILVSSGVKKVIRVKVHIIGQFIVQTRFVC 753

Query: 377 LFNIEGRFTKVNAQLLGDVIYCDPMEFTYNSSVSNINASLAVIWGGSKPLDNPDNVHVNI 436
            FNIEGR T VNA+LL D IYC+  EF+Y S   NI    AVIWGGSKPLDNP N+H+ I
Sbjct: 754 QFNIEGRVTIVNARLLADTIYCEETEFSYTSRAPNITVPFAVIWGGSKPLDNPHNIHLVI 813

Query: 437 YKCRDLANNCGLCLALPEKYGCGWCESSKRCEIFEQCDKGL 477
           Y+CRD+A+NCG+CL L  KY CGWC+S+ RCE+ + C++ +
Sbjct: 814 YRCRDMADNCGMCLTLAPKYDCGWCQSTDRCEVKDNCERNI 854

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	609
FB|FBgn0025741	1945	plexA "plexin A" [Drosophila m	0.467	0.146	0.639	1.1e-104
WB|WBGene00004047	1945	plx-1 [Caenorhabditis elegans	0.441	0.138	0.338	2.3e-36
UNIPROTKB|Q3V5K0	1945	plx-1 "Protein PLX-1" [Caenorh	0.441	0.138	0.338	2.3e-36
FB|FBgn0035165	228	CG13887 [Drosophila melanogast	0.246	0.657	0.473	1.2e-35
ZFIN|ZDB-GENE-070613-1	1892	plxna3 "plexin A3" [Danio reri	0.423	0.136	0.307	3.2e-33
UNIPROTKB|O75051	1894	PLXNA2 "Plexin-A2" [Homo sapie	0.422	0.135	0.318	6.1e-33
RGD|1305325	1894	Plxna2 "plexin A2" [Rattus nor	0.430	0.138	0.318	3e-32
UNIPROTKB|F1PKX9	1453	PLXNA2 "Uncharacterized protei	0.422	0.176	0.318	5.7e-32
MGI|MGI:107684	1894	Plxna2 "plexin A2" [Mus muscul	0.430	0.138	0.314	8.4e-32
UNIPROTKB|F1PHZ1	1977	PLXNA2 "Uncharacterized protei	0.422	0.129	0.318	8.9e-32

FB|FBgn0025741 plexA "plexin A" [Drosophila melanogaster (taxid:7227)]

 Score = 1041 (371.5 bits), Expect = 1.1e-104, Sum P(2) = 1.1e-104
 Identities = 183/286 (63%), Positives = 220/286 (76%)

Query:   197 RTLDLAIENLPELPGQLLCAFTIGETTVTTEAIKQTNGVKCATPPTKDIPSIPVGQHNIT 256
             RTL+L I++LP+L   L+CAFT  +  + T A K+ NGV C TP T  +P I  G+H+ T
Sbjct:   590 RTLELIIDHLPQLKENLICAFTTEDKALFTNATKKRNGVNCTTPRTDMLPQIEQGKHHFT 649

Query:   257 AKLSVRSSNGPDFVTTKFMFFDCNTYSSCTQCVSSDFPCDWCVDGHRCTHDTAENCRNDI 316
             AKLSVR+ NGPD V+T F FFDC+T+SSCT+CVSS+FPCDWCV+ HRCTHDTAENCRNDI
Sbjct:   650 AKLSVRTRNGPDLVSTDFTFFDCSTHSSCTRCVSSEFPCDWCVEAHRCTHDTAENCRNDI 709

Query:   317 LITGVSRVGPSFRSGPAFCPTIRGTDIGSQEILVPSGXXXXXXXXXHIVGQFIVQTRFVC 376
             L+TGVSR+GPS+RSGP FCPTI  T  GS E+LV  G         HI+GQFIVQTRFVC
Sbjct:   710 LVTGVSRIGPSYRSGPGFCPTINATGDGS-EVLVAGGTSKSIKVKVHIIGQFIVQTRFVC 768

Query:   377 LFNIEGRFTKVNAQLLGDVIYCDPMEFTYNSSVSNINASLAVIWGGSKPLDNPDNVHVNI 436
              FNIEGR T +NAQLLGD IYCD MEF Y S   N+ A+ AVIWGGSKPLDNP N+HV I
Sbjct:   769 QFNIEGRVTSLNAQLLGDTIYCDSMEFQYTSRSPNLTATFAVIWGGSKPLDNPHNIHVVI 828

Query:   437 YKCRDLANNCGLCLALPEKYGCGWCESSKRCEIFEQCDKGLEGDSD 482
             Y+CR++A++CG+CLAL EKY CGWC S+  CE+ EQC+K  EG +D
Sbjct:   829 YRCREMADSCGICLALSEKYNCGWCSSTNTCEVEEQCNKNKEGKTD 874

GO:0017154 "semaphorin receptor activity" evidence=ISS;TAS

GO:0008046 "axon guidance receptor activity" evidence=NAS

GO:0008045 "motor neuron axon guidance" evidence=NAS

GO:0016020 "membrane" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0007411 "axon guidance" evidence=IMP

GO:0016199 "axon midline choice point recognition" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:2000305 "semaphorin-plexin signaling pathway involved in regulation of photoreceptor cell axon guidance" evidence=IGI

GO:0071889 "14-3-3 protein binding" evidence=IPI

WB|WBGene00004047 plx-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 407 (148.3 bits), Expect = 2.3e-36, P = 2.3e-36
 Identities = 101/298 (33%), Positives = 145/298 (48%)

Query:   199 LDLAIENLPELPG---QLLCAFTIGETTVTTEAIKQTNGVKCATPPTKDIPSIPVGQHNI 255
             L++ IENL    G   Q L  F+ G+  V+ + +     +KCATPP   +P IP  ++++
Sbjct:   568 LNVTIENLQAPKGRRMQCLFQFSTGDAVVS-DPMPFDGSLKCATPPMNRLPRIPTNEYHL 626

Query:   256 TAKLSVRSSNGP-DFVTTKFMFFDCNTYSSCTQCVSSDFPCDWCVDGHRCTHD--TAENC 312
              AKL V S        TT F F+DCN Y+SC+ C +S FPCDWC++ + C     T + C
Sbjct:   627 PAKLIVVSDGSKLPLATTNFSFYDCNRYTSCSTCSASQFPCDWCLESNECVAGKLTEDKC 686

Query:   313 RNDILITGVSRVGPSFRSGPAFCPTIRGTDIGSQEILVPSGXXXXXXXXXHIVGQFIVQT 372
             R   ++ G++R G S R GP+ CP I        ++ V +G           V    +  
Sbjct:   687 RKQHIVNGLNRDGSSIRKGPSKCPHIVAP---VSKMSVATGERRNISVKVENVDATFMGD 743

Query:   373 RFVCLFNIEGRFT--KVNAQLLGDVIYCDPMEFT-YNSSVSNINAS---LAVIWG----- 421
              F C F   G  T  K+  +   D I CD M F  Y +S+    ++     VIW      
Sbjct:   744 -FKCEFKY-GTVTHEKIAMRTSDDTITCDEMLFEPYGTSLLGSGSTPYGFNVIWSATGFA 801

Query:   422 -GSKP----LDNPDNVHVNIYKCRDLANNCGLCLALP-EKYGCGWCESSKRCEIFEQC 473
              G K     LDN  ++ +++Y C +LA NCG CL L  +KY CGWC    +C    QC
Sbjct:   802 VGKKSINRVLDNVASLAIDVYSCENLATNCGRCLTLDADKYDCGWCSLDSKCARPHQC 859

GO:0016021 "integral to membrane" evidence=IEA;IDA

GO:0016020 "membrane" evidence=IEA

GO:0045138 "tail tip morphogenesis" evidence=IMP

GO:0051270 "regulation of cellular component movement" evidence=IMP

GO:0007264 "small GTPase mediated signal transduction" evidence=ISS

GO:0001726 "ruffle" evidence=IDA

GO:0005884 "actin filament" evidence=IDA

GO:0017154 "semaphorin receptor activity" evidence=ISS

GO:0048365 "Rac GTPase binding" evidence=ISS

UNIPROTKB|Q3V5K0 plx-1 "Protein PLX-1" [Caenorhabditis elegans (taxid:6239)]

 Score = 407 (148.3 bits), Expect = 2.3e-36, P = 2.3e-36
 Identities = 101/298 (33%), Positives = 145/298 (48%)

Query:   199 LDLAIENLPELPG---QLLCAFTIGETTVTTEAIKQTNGVKCATPPTKDIPSIPVGQHNI 255
             L++ IENL    G   Q L  F+ G+  V+ + +     +KCATPP   +P IP  ++++
Sbjct:   568 LNVTIENLQAPKGRRMQCLFQFSTGDAVVS-DPMPFDGSLKCATPPMNRLPRIPTNEYHL 626

Query:   256 TAKLSVRSSNGP-DFVTTKFMFFDCNTYSSCTQCVSSDFPCDWCVDGHRCTHD--TAENC 312
              AKL V S        TT F F+DCN Y+SC+ C +S FPCDWC++ + C     T + C
Sbjct:   627 PAKLIVVSDGSKLPLATTNFSFYDCNRYTSCSTCSASQFPCDWCLESNECVAGKLTEDKC 686

Query:   313 RNDILITGVSRVGPSFRSGPAFCPTIRGTDIGSQEILVPSGXXXXXXXXXHIVGQFIVQT 372
             R   ++ G++R G S R GP+ CP I        ++ V +G           V    +  
Sbjct:   687 RKQHIVNGLNRDGSSIRKGPSKCPHIVAP---VSKMSVATGERRNISVKVENVDATFMGD 743

Query:   373 RFVCLFNIEGRFT--KVNAQLLGDVIYCDPMEFT-YNSSVSNINAS---LAVIWG----- 421
              F C F   G  T  K+  +   D I CD M F  Y +S+    ++     VIW      
Sbjct:   744 -FKCEFKY-GTVTHEKIAMRTSDDTITCDEMLFEPYGTSLLGSGSTPYGFNVIWSATGFA 801

Query:   422 -GSKP----LDNPDNVHVNIYKCRDLANNCGLCLALP-EKYGCGWCESSKRCEIFEQC 473
              G K     LDN  ++ +++Y C +LA NCG CL L  +KY CGWC    +C    QC
Sbjct:   802 VGKKSINRVLDNVASLAIDVYSCENLATNCGRCLTLDADKYDCGWCSLDSKCARPHQC 859

GO:0071526 "semaphorin-plexin signaling pathway" evidence=ISS

FB|FBgn0035165 CG13887 [Drosophila melanogaster (taxid:7227)]

 Score = 319 (117.4 bits), Expect = 1.2e-35, Sum P(2) = 1.2e-35
 Identities = 72/152 (47%), Positives = 92/152 (60%)

Query:     1 MSLQWTLIATVLYFEMAFMLLLILPILSTQRLHKILKSKFVQGVKTQAGWYFGCILVILS 60
             MSL WTLIA  LY E+A +LLL+LP+L+  R ++  KSKF+  +  QA  YF  I+ IL 
Sbjct:     1 MSLVWTLIAGFLYAEIALVLLLVLPVLTPYRWNRFFKSKFLSMLGQQAHIYFLLIMGILV 60

Query:    61 LFFLDAIREMRKYASPEVKEEAHGHLDAEMQNNMKLFRAQRNFYISGFSLFLWLVIRXXX 120
             +F L+AIREMRKY+  +   E H  L+ EMQ++MKLFRAQRNFYISGF++FL LVIR   
Sbjct:    61 IFLLEAIREMRKYSGLQQSNEVH--LNVEMQHSMKLFRAQRNFYISGFAIFLALVIRRLV 118

Query:   121 XXXXXXXXXXXXXEASMNXXXXXXXXXXXLLD 152
                          EAS             LL+
Sbjct:   119 NLICTQANLMAQSEASFKQAQSATAAARSLLE 150

GO:0016021 "integral to membrane" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

ZFIN|ZDB-GENE-070613-1 plxna3 "plexin A3" [Danio rerio (taxid:7955)]

 Score = 383 (139.9 bits), Expect = 3.2e-33, P = 3.2e-33
 Identities = 86/280 (30%), Positives = 139/280 (49%)

Query:   199 LDLAIENLPELPGQLLCAFTIGETTVTTEAIKQTNGVKCATPPTKDIPSIPVGQHNI-TA 257
             L + + N+P L   + C F   E T +   +     + C +P  +D+PS+  G  +    
Sbjct:   579 LSVKVANVPNLSAGVTCVFE--ELTESPGEVLAEGQILCMSPSLRDVPSVTQGYGDKRVV 636

Query:   258 KLSVRSSN-GPDFVTTKFMFFDCNTYSSCTQCVSSDFPCDWCVDGHRCTHDTAENCRNDI 316
             KLS++S   G  F+TT F+F++C+   SC+ CVSS FPC+WC   H CT++ AE C    
Sbjct:   637 KLSLKSKETGLKFITTDFVFYNCSVLQSCSSCVSSPFPCNWCKYRHICTNNVAE-CSFQ- 694

Query:   317 LITGVSRVGPSFRSGPAFCPTIRGTDIGSQEILVPSGXXXXXXXXXHIVGQ-FIVQTRFV 375
                   RV  S   G   CP I    + S +ILVP+G           + Q    Q  + 
Sbjct:   695 ----EGRV--SSAEG---CPQI----LPSSDILVPAGIVRPITLRARNLPQPQSGQKNYE 741

Query:   376 CLFNIEGRFTKVNA-QLLGDVIYCDPMEFTYNSS-VSNINASLAVIWGGSKPLDNPDNVH 433
             C+FNI+G+  ++ A +     I C    + Y  + + ++    +++W G  P+D P ++ 
Sbjct:   742 CVFNIQGKVQRIPAVRFNSSCIQCQNTSYWYEGNEMGDLPVDFSIVWDGDFPIDKPSSMR 801

Query:   434 VNIYKCRDLANNCGLCLALPEKYGCGWCESSKRCEIFEQC 473
               +YKC    ++CGLCL     + CGWC + K+C + + C
Sbjct:   802 ALLYKCEAQRDSCGLCLKADSTFECGWCLADKKCLLKQHC 841

GO:0004872 "receptor activity" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0048755 "branching morphogenesis of a nerve" evidence=IGI;IMP

GO:0008045 "motor neuron axon guidance" evidence=IGI;IMP

GO:0048675 "axon extension" evidence=IGI;IMP

GO:0005886 "plasma membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0060272 "embryonic skeletal joint morphogenesis" evidence=IMP

UNIPROTKB|O75051 PLXNA2 "Plexin-A2" [Homo sapiens (taxid:9606)]

 Score = 382 (139.5 bits), Expect = 6.1e-33, P = 6.1e-33
 Identities = 90/283 (31%), Positives = 137/283 (48%)

Query:   197 RTLDLAIENLPELPGQLLCAFTIGETTVTTEAIKQTNG--VKCATPPTKDIPSIPVGQHN 254
             R L L + + P+L   + CAF  G  T   E   Q +G  V C +P  KD+P IP+ Q  
Sbjct:   576 RLLSLVVSDAPDLSAGIACAF--GNLT---EVEGQVSGSQVICISPGPKDVPVIPLDQDW 630

Query:   255 ITAKLSVRSSN-GPDFVTTKFMFFDCNTYSSCTQCVSSDFPCDWCVDGHRCTHDTAENCR 313
                +L +RS   G  FV+T+F F++C+ +  C  CV+S F C WC   + CTHD    C 
Sbjct:   631 FGLELQLRSKETGKIFVSTEFKFYNCSAHQLCLSCVNSAFRCHWCKYRNLCTHDPT-TCS 689

Query:   314 NDILITGVSRVGPSFRSGPAFCPTIRGTDIGSQEILVPSGXXXXXXXXXHIVGQ-FIVQT 372
                      R+  S       CP +    + ++EIL+P G           + Q    Q 
Sbjct:   690 FQ-----EGRINIS-----EDCPQL----VPTEEILIPVGEVKPITLKARNLPQPQSGQR 735

Query:   373 RFVCLFNIEGRFTKVNA-QLLGDVIYCDPMEFTYNS-SVSNINASLAVIWGGSKPLDNPD 430
              + C+ NI+G   +V A +     + C    + Y+   +SN+    AV+W G+  +DNP 
Sbjct:   736 GYECVLNIQGAIHRVPALRFNSSSVQCQNSSYQYDGMDISNLAVDFAVVWNGNFIIDNPQ 795

Query:   431 NVHVNIYKCRDLANNCGLCLALPEKYGCGWCESSKRCEIFEQC 473
             ++ V++YKC     +CGLCL    K+ CGWC   +RC + + C
Sbjct:   796 DLKVHLYKCAAQRESCGLCLKADRKFECGWCSGERRCTLHQHC 838

GO:0005622 "intracellular" evidence=IEA

GO:0001756 "somitogenesis" evidence=IEA

GO:0021915 "neural tube development" evidence=IEA

GO:0021935 "cerebellar granule cell precursor tangential migration" evidence=IEA

GO:0051642 "centrosome localization" evidence=IEA

GO:0060037 "pharyngeal system development" evidence=IEA

GO:0060174 "limb bud formation" evidence=IEA

GO:0030334 "regulation of cell migration" evidence=ISS

GO:0071526 "semaphorin-plexin signaling pathway" evidence=ISS

GO:0017154 "semaphorin receptor activity" evidence=ISS

GO:0005887 "integral to plasma membrane" evidence=ISS

GO:0005886 "plasma membrane" evidence=TAS

GO:0007411 "axon guidance" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0002116 "semaphorin receptor complex" evidence=TAS

RGD|1305325 Plxna2 "plexin A2" [Rattus norvegicus (taxid:10116)]

 Score = 378 (138.1 bits), Expect = 3.0e-32, P = 3.0e-32
 Identities = 92/289 (31%), Positives = 139/289 (48%)

Query:   191 ISDLKPRTLDLAIENLPELPGQLLCAFTIGETTVTTEAIKQTNG--VKCATPPTKDIPSI 248
             +SD   R L L + + P L   + CAF  G  T   E   Q +G  V C +P  KD+P I
Sbjct:   571 VSD-HSRLLSLVVNDAPNLSEGIACAF--GNLT---EVEGQVSGSQVICISPGPKDVPVI 624

Query:   249 PVGQHNITAKLSVRSSN-GPDFVTTKFMFFDCNTYSSCTQCVSSDFPCDWCVDGHRCTHD 307
             P+ Q     +L +RS   G  FV+T+F F++C+ +  C  CV+S F C WC   + CTHD
Sbjct:   625 PLDQDWFGLELQLRSKETGKIFVSTEFKFYNCSAHQLCLSCVNSAFRCHWCKYRNLCTHD 684

Query:   308 TAENCRNDILITGVSRVGPSFRSGPAFCPTIRGTDIGSQEILVPSGXXXXXXXXXHIVGQ 367
                 C          R+  S       CP +    + ++EIL+P G           + Q
Sbjct:   685 PT-TCSFQ-----EGRINVS-----EDCPQL----VPTEEILIPVGEVKPITLKARNLPQ 729

Query:   368 -FIVQTRFVCLFNIEGRFTKVNA-QLLGDVIYCDPMEFTYNS-SVSNINASLAVIWGGSK 424
                 Q  + C+ NI+G   +V A +     + C    + Y+   +SN+    AV+W G+ 
Sbjct:   730 PQSGQRGYECVLNIQGAVHRVPALRFNSSSVQCQNSSYQYDGMDISNLAVDFAVVWNGNF 789

Query:   425 PLDNPDNVHVNIYKCRDLANNCGLCLALPEKYGCGWCESSKRCEIFEQC 473
              +DNP ++ V++YKC     +CGLCL    K+ CGWC   +RC + + C
Sbjct:   790 IIDNPQDLKVHLYKCAAQRESCGLCLKADHKFECGWCSGERRCTLRQHC 838

GO:0001756 "somitogenesis" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=IEA;ISO

GO:0007166 "cell surface receptor signaling pathway" evidence=ISO

GO:0017154 "semaphorin receptor activity" evidence=IEA;ISO

GO:0021915 "neural tube development" evidence=IEA

GO:0021935 "cerebellar granule cell precursor tangential migration" evidence=IEA;ISO

GO:0030334 "regulation of cell migration" evidence=IEA;ISO

GO:0051642 "centrosome localization" evidence=IEA;ISO

GO:0060037 "pharyngeal system development" evidence=IEA

GO:0060174 "limb bud formation" evidence=IEA

GO:0071526 "semaphorin-plexin signaling pathway" evidence=ISO

UNIPROTKB|F1PKX9 PLXNA2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 375 (137.1 bits), Expect = 5.7e-32, P = 5.7e-32
 Identities = 90/283 (31%), Positives = 137/283 (48%)

Query:   197 RTLDLAIENLPELPGQLLCAFTIGETTVTTEAIKQTNG--VKCATPPTKDIPSIPVGQHN 254
             R L L + + P+L   + CAF  G  T   E   Q +G  V C +P  KD+P IP+ Q  
Sbjct:   135 RRLSLVVSDAPDLSVGISCAF--GNLT---EVEGQVSGSQVICISPGPKDVPVIPLDQDW 189

Query:   255 ITAKLSVRSSN-GPDFVTTKFMFFDCNTYSSCTQCVSSDFPCDWCVDGHRCTHDTAENCR 313
                +L +RS   G  FV+T+F F++C+ +  C  CV+S F C WC   + CTHD    C 
Sbjct:   190 FGLELQLRSKETGKIFVSTEFKFYNCSAHQLCLSCVNSAFRCHWCKYRNLCTHDPT-TCS 248

Query:   314 NDILITGVSRVGPSFRSGPAFCPTIRGTDIGSQEILVPSGXXXXXXXXXHIVGQ-FIVQT 372
                      R+  S       CP +    + ++EIL+P G           + Q    Q 
Sbjct:   249 FQ-----EGRINIS-----EDCPQL----VPTEEILIPVGEVKPITLKARNLPQPQSGQR 294

Query:   373 RFVCLFNIEGRFTKVNA-QLLGDVIYCDPMEFTYNS-SVSNINASLAVIWGGSKPLDNPD 430
              + C+ NI+G   +V A +     + C    + Y+   +SN+    AV+W G+  +DNP 
Sbjct:   295 GYECVLNIQGAVHRVPALRFNSSSVQCQNSSYQYDGMDISNLAVDFAVVWNGNFIIDNPQ 354

Query:   431 NVHVNIYKCRDLANNCGLCLALPEKYGCGWCESSKRCEIFEQC 473
             ++ V++YKC     +CGLCL    K+ CGWC   +RC + + C
Sbjct:   355 DLKVHLYKCAAQRESCGLCLKADRKFECGWCSGERRCTLQQHC 397

GO:0060174 "limb bud formation" evidence=IEA

GO:0060037 "pharyngeal system development" evidence=IEA

GO:0051642 "centrosome localization" evidence=IEA

GO:0030334 "regulation of cell migration" evidence=IEA

GO:0021935 "cerebellar granule cell precursor tangential migration" evidence=IEA

GO:0021915 "neural tube development" evidence=IEA

GO:0017154 "semaphorin receptor activity" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=IEA

GO:0001756 "somitogenesis" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

MGI|MGI:107684 Plxna2 "plexin A2" [Mus musculus (taxid:10090)]

 Score = 375 (137.1 bits), Expect = 8.4e-32, P = 8.4e-32
 Identities = 91/289 (31%), Positives = 139/289 (48%)

Query:   191 ISDLKPRTLDLAIENLPELPGQLLCAFTIGETTVTTEAIKQTNG--VKCATPPTKDIPSI 248
             +SD   R L L + + P L   + CAF  G  T   E   Q +G  V C +P  KD+P I
Sbjct:   571 VSD-HSRLLSLVVNDAPNLSEGIACAF--GNLT---EVEGQVSGSQVICISPGPKDVPVI 624

Query:   249 PVGQHNITAKLSVRSSN-GPDFVTTKFMFFDCNTYSSCTQCVSSDFPCDWCVDGHRCTHD 307
             P+ Q     +L +RS   G  FV+T+F F++C+ +  C  CV+S F C WC   + CTHD
Sbjct:   625 PLDQDWFGLELQLRSKETGKIFVSTEFKFYNCSAHQLCLSCVNSAFRCHWCKYRNLCTHD 684

Query:   308 TAENCRNDILITGVSRVGPSFRSGPAFCPTIRGTDIGSQEILVPSGXXXXXXXXXHIVGQ 367
                 C          R+  S       CP +    + ++EIL+P G           + Q
Sbjct:   685 PT-TCSFQ-----EGRINVS-----EDCPQL----VPTEEILIPVGEVKPITLKARNLPQ 729

Query:   368 -FIVQTRFVCLFNIEGRFTKVNA-QLLGDVIYCDPMEFTYNS-SVSNINASLAVIWGGSK 424
                 Q  + C+ +I+G   +V A +     + C    + Y+   +SN+    AV+W G+ 
Sbjct:   730 PQSGQRGYECVLSIQGAVHRVPALRFNSSSVQCQNSSYQYDGMDISNLAVDFAVVWNGNF 789

Query:   425 PLDNPDNVHVNIYKCRDLANNCGLCLALPEKYGCGWCESSKRCEIFEQC 473
              +DNP ++ V++YKC     +CGLCL    K+ CGWC   +RC + + C
Sbjct:   790 IIDNPQDLKVHLYKCAAQRESCGLCLKADHKFECGWCSGERRCTLHQHC 838

GO:0004872 "receptor activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=IDA

GO:0007165 "signal transduction" evidence=IEA

GO:0007166 "cell surface receptor signaling pathway" evidence=IDA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0017154 "semaphorin receptor activity" evidence=IGI;IMP;IPI

GO:0021935 "cerebellar granule cell precursor tangential migration" evidence=IMP

GO:0030334 "regulation of cell migration" evidence=IMP

GO:0051642 "centrosome localization" evidence=IMP

GO:0071526 "semaphorin-plexin signaling pathway" evidence=IMP

UNIPROTKB|F1PHZ1 PLXNA2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 375 (137.1 bits), Expect = 8.9e-32, P = 8.9e-32
 Identities = 90/283 (31%), Positives = 137/283 (48%)

Query:   197 RTLDLAIENLPELPGQLLCAFTIGETTVTTEAIKQTNG--VKCATPPTKDIPSIPVGQHN 254
             R L L + + P+L   + CAF  G  T   E   Q +G  V C +P  KD+P IP+ Q  
Sbjct:   591 RRLSLVVSDAPDLSVGISCAF--GNLT---EVEGQVSGSQVICISPGPKDVPVIPLDQDW 645

Query:   255 ITAKLSVRSSN-GPDFVTTKFMFFDCNTYSSCTQCVSSDFPCDWCVDGHRCTHDTAENCR 313
                +L +RS   G  FV+T+F F++C+ +  C  CV+S F C WC   + CTHD    C 
Sbjct:   646 FGLELQLRSKETGKIFVSTEFKFYNCSAHQLCLSCVNSAFRCHWCKYRNLCTHDPT-TCS 704

Query:   314 NDILITGVSRVGPSFRSGPAFCPTIRGTDIGSQEILVPSGXXXXXXXXXHIVGQ-FIVQT 372
                      R+  S       CP +    + ++EIL+P G           + Q    Q 
Sbjct:   705 FQ-----EGRINIS-----EDCPQL----VPTEEILIPVGEVKPITLKARNLPQPQSGQR 750

Query:   373 RFVCLFNIEGRFTKVNA-QLLGDVIYCDPMEFTYNS-SVSNINASLAVIWGGSKPLDNPD 430
              + C+ NI+G   +V A +     + C    + Y+   +SN+    AV+W G+  +DNP 
Sbjct:   751 GYECVLNIQGAVHRVPALRFNSSSVQCQNSSYQYDGMDISNLAVDFAVVWNGNFIIDNPQ 810

Query:   431 NVHVNIYKCRDLANNCGLCLALPEKYGCGWCESSKRCEIFEQC 473
             ++ V++YKC     +CGLCL    K+ CGWC   +RC + + C
Sbjct:   811 DLKVHLYKCAAQRESCGLCLKADRKFECGWCSGERRCTLQQHC 853

GO:0016021 "integral to membrane" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0004872 "receptor activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	609
pfam05529	149	pfam05529, Bap31, B-cell receptor-associated prote	9e-43
COG5374	192	COG5374, COG5374, Uncharacterized conserved protei	4e-09
pfam01437	48	pfam01437, PSI, Plexin repeat	7e-08
pfam13851	201	pfam13851, GAS, Growth-arrest specific micro-tubul	7e-08
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	3e-07
smart00423	47	smart00423, PSI, domain found in Plexins, Semaphor	5e-07
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	4e-06
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	6e-06
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	7e-06
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-05
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	3e-05
pfam01437	48	pfam01437, PSI, Plexin repeat	4e-05
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	4e-05
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	4e-05
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	5e-05
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	6e-05
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	7e-05
pfam05262	489	pfam05262, Borrelia_P83, Borrelia P83/100 protein	7e-05
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	8e-05
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	9e-05
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	1e-04
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	1e-04
smart00787	312	smart00787, Spc7, Spc7 kinetochore protein	1e-04
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	2e-04
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	2e-04
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	3e-04
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	3e-04
smart00787	312	smart00787, Spc7, Spc7 kinetochore protein	3e-04
smart00423	47	smart00423, PSI, domain found in Plexins, Semaphor	4e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	4e-04
pfam08317	321	pfam08317, Spc7, Spc7 kinetochore protein	4e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	6e-04
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	6e-04
pfam02463	1162	pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	6e-04
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	7e-04
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	7e-04
pfam08317	321	pfam08317, Spc7, Spc7 kinetochore protein	8e-04
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	0.001
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	0.001
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.001
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	0.001
pfam04111	356	pfam04111, APG6, Autophagy protein Apg6	0.001
PRK00409	782	PRK00409, PRK00409, recombination and DNA strand e	0.001
COG1579	239	COG1579, COG1579, Zn-ribbon protein, possibly nucl	0.001
pfam08432	182	pfam08432, DUF1742, Fungal protein of unknown func	0.001
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	0.002
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	0.002
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	0.002
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	0.002
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.002
smart01071	154	smart01071, CDC37_N, Cdc37 N terminal kinase bindi	0.002
pfam10174	774	pfam10174, Cast, RIM-binding protein of the cytoma	0.002
pfam02841	297	pfam02841, GBP_C, Guanylate-binding protein, C-ter	0.002
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	0.003
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.003
PRK12704	520	PRK12704, PRK12704, phosphodiesterase; Provisional	0.003
pfam13851	201	pfam13851, GAS, Growth-arrest specific micro-tubul	0.004
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	0.004
COG1842	225	COG1842, PspA, Phage shock protein A (IM30), suppr	0.004
TIGR01069	771	TIGR01069, mutS2, MutS2 family protein	0.004

>gnl|CDD|218624 pfam05529, Bap31, B-cell receptor-associated protein 31-like

 Score =  150 bits (381), Expect = 9e-43
 Identities = 57/143 (39%), Positives = 79/143 (55%), Gaps = 5/143 (3%)

Query: 1   MSLQWTLIATVLYFEMAFMLLLILPILSTQRLHKILKSKFVQGVKTQAGWYFGCILVILS 60
           MSL WTL+  +LY EMA  LLL+LP+ S  R  KI KS     +  Q    F  +L+ L 
Sbjct: 1   MSLYWTLVFGLLYAEMAVFLLLVLPLPSPIR-RKIFKSVSKLQLSQQFQTGFKILLIFLL 59

Query: 61  LFFLDAIREMRKYAS---PEVKEEAHGHLDAEMQNNMKLFRAQRNFYISGFSLFLWLVIR 117
           + F+D++R + KY+            G   +E Q   +LF AQRN Y+SGF+LFL LVIR
Sbjct: 60  VLFIDSVRRVYKYSGELQGSGNASLGGGERSEYQTLARLFYAQRNLYLSGFTLFLTLVIR 119

Query: 118 QIIQLIAQQANLLAQNEASMNQA 140
           +++ L+ +   L    EA   QA
Sbjct: 120 RVVTLVEELVKLEEL-EALKKQA 141

Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31. Length = 149

>gnl|CDD|227666 COG5374, COG5374, Uncharacterized conserved protein [Function unknown]

 Score = 56.4 bits (136), Expect = 4e-09
 Identities = 40/175 (22%), Positives = 71/175 (40%), Gaps = 24/175 (13%)

Query: 1   MSLQWTLIATVLYFEMAFMLLLILPILSTQR---LHKILKSKFVQGVKTQAGWYFGCILV 57
           M + +TL+ ++L  EM    +L+LP+    R   +     SK  +G K           +
Sbjct: 1   MGIYYTLVFSLLVVEMVMFFILVLPLPKRLRRSLMKLYSTSKVYRGFKH----ILKITFI 56

Query: 58  ILSLFFLDAIREM------RKYASPEVKEEAHGHLDAEMQNNMKLFRAQRNFYISGFSLF 111
            + L F+D+ + +          S  +   A   +          F AQRN Y+SG +LF
Sbjct: 57  FILLLFIDSWKRVYRVSKEANLYSASINNYAVTRIAVLA----SRFYAQRNMYLSGSALF 112

Query: 112 LWLVI-RQ---IIQLIAQQANLLAQ---NEASMNQARQAAVAAQALLDGPRGKWF 159
           L +V+ R    + +++ + A    +    EA     +     AQ LL+G +    
Sbjct: 113 LSIVVMRVMSIVEEMLEENAKKGGKIDKMEADSTDLKARLRKAQILLEGLQKNQE 167

Length = 192

>gnl|CDD|216504 pfam01437, PSI, Plexin repeat

 Score = 48.7 bits (116), Expect = 7e-08
 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 3/50 (6%)

Query: 278 DCNTYSSCTQCVSS-DFPCDWCVDGHRCTHDTAENCRNDILITGVSRVGP 326
           +C+ Y+SC+ C+++ D  C WC    RCT      C      +  S   P
Sbjct: 1   NCSQYTSCSSCLAARDPYCGWCSSEGRCTR--GTECPRSEGPSWSSSKCP 48

A cysteine rich repeat found in several different extracellular receptors. The function of the repeat is unknown. Three copies of the repeat are found Plexin. Two copies of the repeat are found in mahogany protein. A related C. elegans protein contains four copies of the repeat. The Met receptor contains a single copy of the repeat. The Pfam alignment shows 6 conserved cysteine residues that may form three conserved disulphide bridges, whereas shows 8 conserved cysteines. The pattern of conservation suggests that cysteines 5 and 7 (that are not absolutely conserved) form a disulphide bridge (Personal observation. A Bateman). Length = 48

>gnl|CDD|222417 pfam13851, GAS, Growth-arrest specific micro-tubule binding

 Score = 52.6 bits (127), Expect = 7e-08
 Identities = 38/125 (30%), Positives = 62/125 (49%), Gaps = 9/125 (7%)

Query: 484 IKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKKDDK 543
           IK LKE++     E+KK   N    +     + +E  RL++  +K ++ V E   K  D 
Sbjct: 29  IKSLKEEI----AEMKK---NEEHNEKLMAEIAQENKRLVEPLKKAEEEVEELRKKLKD- 80

Query: 544 YQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQKVVTE 603
           Y+K D   +K LK +L + E+ELK  K  S  L+ + + V +E D L  + E   + V +
Sbjct: 81  YEK-DKQSLKNLKARLKELEKELKNLKWESEVLEQRFEKVERERDELYDKFEAAIQDVQQ 139

Query: 604 QGDKK 608
           +   K
Sbjct: 140 KTGLK 144

This family is the highly conserved central region of a number of metazoan proteins referred to as growth-arrest proteins. In mouse, Gas8 is predominantly a testicular protein, whose expression is developmentally regulated during puberty and spermatogenesis. In humans, it is absent in infertile males who lack the ability to generate gametes. The localisation of Gas8 in the motility apparatus of post-meiotic gametocytes and mature spermatozoa, together with the detection of Gas8 also in cilia at the apical surfaces of epithelial cells lining the pulmonary bronchi and Fallopian tubes suggests that the Gas8 protein may have a role in the functioning of motile cellular appendages. Gas8 is a microtubule-binding protein localised to regions of dynein regulation in mammalian cells. Length = 201

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 53.1 bits (128), Expect = 3e-07
 Identities = 33/133 (24%), Positives = 72/133 (54%), Gaps = 8/133 (6%)

Query: 475 KGLEGDSDEIKRLKEKLSKTEEELKKEKTNSAALKSQADSVG----KEYDRLLKEHEKVQ 530
           K L+ + ++++ LK+KL++ E++L + +   A L  + + +G    +E +  LKE E   
Sbjct: 542 KSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEELEERLKELEPFY 601

Query: 531 KVVTEQGDKKDDKYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRL 590
               E  D + +  ++    E+K+L+E+L K  EEL + +     L+ + + + K+Y   
Sbjct: 602 NEYLELKDAEKELERE--EKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSE- 658

Query: 591 LKEHEKVQKVVTE 603
            +E+E++++   E
Sbjct: 659 -EEYEELREEYLE 670

Length = 880

>gnl|CDD|214655 smart00423, PSI, domain found in Plexins, Semaphorins and Integrins

 Score = 46.4 bits (110), Expect = 5e-07
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 3/40 (7%)

Query: 278 DCNTYSSCTQCVSSDFP-CDWCVDGHRCTHDTAENCRNDI 316
            C+ Y+SC++C+ +  P C WC    RCT    E C +  
Sbjct: 1   RCSKYTSCSECLLARDPYCAWCSSQGRCTS--GERCDSRR 38

Length = 47

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 49.7 bits (119), Expect = 4e-06
 Identities = 33/158 (20%), Positives = 80/158 (50%), Gaps = 10/158 (6%)

Query: 462 ESSKRCEIFEQCDKGLEGDSD----EIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGK 517
           E  +  E  ++    L+ + +    EI  L+E+L + E EL++ +     LK + +++ +
Sbjct: 278 ELREELEELQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKE 337

Query: 518 EYDR---LLKEHEKVQKVVTEQGDKKDDK---YQKGDSDEIKRLKEKLSKTEEELKKEKT 571
           E +    LL+E E++   + E  ++ ++K     +   +  + L+E+L++ E EL + + 
Sbjct: 338 ELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRN 397

Query: 572 NSAALKNQADSVGKEYDRLLKEHEKVQKVVTEQGDKKD 609
               LK + +S+ +  +RL +  E +++ + E   + +
Sbjct: 398 ELEELKREIESLEERLERLSERLEDLKEELKELEAELE 435

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 48.9 bits (117), Expect = 6e-06
 Identities = 32/133 (24%), Positives = 72/133 (54%), Gaps = 5/133 (3%)

Query: 482 DEIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTE-QGDKK 540
            ++K L+++L + EEEL + +     L+ + +   KE + L  E E++++ + E Q +  
Sbjct: 232 AKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELL 291

Query: 541 DDKYQKGD-SDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDR---LLKEHEK 596
           + K +  +   EI  L+E+L + E EL++ +     LK + +++ +E +    LL+E E+
Sbjct: 292 ELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQ 351

Query: 597 VQKVVTEQGDKKD 609
           +   + E  ++ +
Sbjct: 352 LLAELEEAKEELE 364

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 48.9 bits (117), Expect = 7e-06
 Identities = 24/121 (19%), Positives = 64/121 (52%), Gaps = 1/121 (0%)

Query: 484 IKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKKDDK 543
           + + KE+  + E +L++ + N   L+   + + K+ ++L ++ EK ++    + + ++ +
Sbjct: 167 VSKYKERKEEAERKLERTEENLERLEDLLEELEKQLEKLERQAEKAERYQELKAELRELE 226

Query: 544 YQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQKVVTE 603
                  ++K L+++L + EEEL + +     L+ + +   KE + L  E E++++ + E
Sbjct: 227 LALL-LAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEE 285

Query: 604 Q 604
            
Sbjct: 286 L 286

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 47.8 bits (114), Expect = 2e-05
 Identities = 28/144 (19%), Positives = 73/144 (50%), Gaps = 14/144 (9%)

Query: 471 EQCDKGLEGDSDEIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKV- 529
           E+ ++ L    +E++ L+E+L + E+E+++ K+    L+ + + + +E   L +E E++ 
Sbjct: 242 EELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELE 301

Query: 530 -----QKVVTEQGDKKDDKYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVG 584
                 +   E+ + + ++ ++     ++ LKEK+   +EEL++ +T    L+       
Sbjct: 302 GEISLLRERLEELENELEELEE----RLEELKEKIEALKEELEERETLLEELEQLL---- 353

Query: 585 KEYDRLLKEHEKVQKVVTEQGDKK 608
            E +   +E E+    + E+ ++ 
Sbjct: 354 AELEEAKEELEEKLSALLEELEEL 377

Length = 1163

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 46.6 bits (111), Expect = 3e-05
 Identities = 33/125 (26%), Positives = 71/125 (56%), Gaps = 4/125 (3%)

Query: 475 KGLEGDSDEIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVT 534
           K LE +  E+K+L+E+L K  EEL + +     L+ + + + K+Y    +E+E++++   
Sbjct: 612 KELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSE--EEYEELREEYL 669

Query: 535 EQGDKKDDKYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEH 594
           E    ++    + + +E+++ +E++ KT E+LK+E       K + + + K  +R+ +  
Sbjct: 670 EL--SRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELEKLEKALERVEELR 727

Query: 595 EKVQK 599
           EKV+K
Sbjct: 728 EKVKK 732

Length = 880

>gnl|CDD|216504 pfam01437, PSI, Plexin repeat

 Score = 41.0 bits (96), Expect = 4e-05
 Identities = 13/41 (31%), Positives = 17/41 (41%), Gaps = 1/41 (2%)

Query: 445 NCGLCLALPEKYGCGWCESSKRCEIFEQCDKGLEGDSDEIK 485
           +C  CLA  +   CGWC S  RC    +C +         K
Sbjct: 7   SCSSCLAARD-PYCGWCSSEGRCTRGTECPRSEGPSWSSSK 46

A cysteine rich repeat found in several different extracellular receptors. The function of the repeat is unknown. Three copies of the repeat are found Plexin. Two copies of the repeat are found in mahogany protein. A related C. elegans protein contains four copies of the repeat. The Met receptor contains a single copy of the repeat. The Pfam alignment shows 6 conserved cysteine residues that may form three conserved disulphide bridges, whereas shows 8 conserved cysteines. The pattern of conservation suggests that cysteines 5 and 7 (that are not absolutely conserved) form a disulphide bridge (Personal observation. A Bateman). Length = 48

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 46.7 bits (110), Expect = 4e-05
 Identities = 41/153 (26%), Positives = 75/153 (49%), Gaps = 12/153 (7%)

Query: 462  ESSKRCEIFEQCDKGLEGDSDEIKRLKEKLSKTEEELKK----EKTNSAALKSQADSVGK 517
            E  K+ E  ++ ++  +  + E  +  E+  K  EE KK    EK  + ALK +A+   K
Sbjct: 1644 EEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKK 1703

Query: 518  EYDRLLKEHEKVQKVVTEQGDKKDDKYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALK 577
              +   KE E+ +K    +  KK ++  K  ++E K+  E+  K  EE KK++      K
Sbjct: 1704 AEELKKKEAEEKKKA---EELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEE----K 1756

Query: 578  NQADSVGKEYDRLLKEHEKVQKVVTEQG-DKKD 609
             +   + KE ++  +E  K ++ V E+  D++D
Sbjct: 1757 KKIAHLKKEEEKKAEEIRKEKEAVIEEELDEED 1789

Length = 2084

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 46.7 bits (110), Expect = 4e-05
 Identities = 34/139 (24%), Positives = 58/139 (41%), Gaps = 14/139 (10%)

Query: 481  SDEIKRLKEKLSKTEEELKK---EKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQG 537
            +DE K+  E+  K  +  KK   E   +A           +     +E  +  +   E+ 
Sbjct: 1317 ADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEA 1376

Query: 538  DKKDDKYQKG-----DSDEIKRLKEKLSKTEEELKK---EKTNSAALKNQADSVGKEYDR 589
             KK D  +K       +DE K+  E+  K  +ELKK    K  +   K +A+   K+ D 
Sbjct: 1377 KKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEK-KKADE 1435

Query: 590  LLKEHEKVQKVVTEQGDKK 608
              K+ E+ +K   ++  KK
Sbjct: 1436 AKKKAEEAKK--ADEAKKK 1452

Length = 2084

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 46.2 bits (110), Expect = 5e-05
 Identities = 29/120 (24%), Positives = 67/120 (55%), Gaps = 5/120 (4%)

Query: 481 SDEIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKK 540
            DE+K L+E+  + EEEL++ ++  A LK + + + +  + L  + E+++  + E  ++ 
Sbjct: 876 EDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEELEAKLERLEVELPELEEEL 935

Query: 541 DDKYQKGDSDEIKRLKEKLSKTEEELKKEKT-NSAALKNQADSVGKEYDRLLKEHEKVQK 599
           +++Y+     E++R  E+L   EEE++     N  A+  + + V + Y+ L  + E +++
Sbjct: 936 EEEYEDTLETELEREIERL---EEEIEALGPVNLRAI-EEYEEVEERYEELKSQREDLEE 991

Length = 1163

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 45.8 bits (109), Expect = 6e-05
 Identities = 26/135 (19%), Positives = 66/135 (48%), Gaps = 12/135 (8%)

Query: 481 SDEIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGK-------EYDRLLKEHEKVQKVV 533
            +E  R+KEK+ + E E+   + + A  + + +   +       E D+LL E E++++ +
Sbjct: 286 EEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREI 345

Query: 534 TEQGDKKDDKYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKE 593
            E+  ++D       ++E   LKE+L     EL++     A  +++     ++ ++L +E
Sbjct: 346 EEERKRRDKL-----TEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKRE 400

Query: 594 HEKVQKVVTEQGDKK 608
             ++++ +    ++ 
Sbjct: 401 INELKRELDRLQEEL 415

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 45.5 bits (108), Expect = 7e-05
 Identities = 24/122 (19%), Positives = 57/122 (46%), Gaps = 7/122 (5%)

Query: 482 DEIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKKD 541
           +  + L+ +L K   + + E+   AAL+   + V +    + +E ++++         + 
Sbjct: 630 EAEEELESELEKLNLQAELEELLQAALEELEEKVEELEAEIRRELQRIENE-------EQ 682

Query: 542 DKYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQKVV 601
            + +  + ++++   E+L +  EEL K+      L  + +S   E + L KE EK++K +
Sbjct: 683 LEEKLEELEQLEEELEQLREELEELLKKLGEIEQLIEELESRKAELEELKKELEKLEKAL 742

Query: 602 TE 603
             
Sbjct: 743 EL 744

Length = 908

>gnl|CDD|114011 pfam05262, Borrelia_P83, Borrelia P83/100 protein

 Score = 45.4 bits (107), Expect = 7e-05
 Identities = 32/144 (22%), Positives = 68/144 (47%), Gaps = 1/144 (0%)

Query: 465 KRCEIFEQCDKGLEGDSDEIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLK 524
            R ++ +  ++  + D+   ++LKE+L K + +  K +  +   +  AD    E  +  +
Sbjct: 196 FRRDMTDLKERESQEDAKRAQQLKEELDKKQIDADKAQQKADFAQDNADKQRDEVRQKQQ 255

Query: 525 EHEKVQKVVTEQGDKKDDKYQKGDSDEIKRLKEKLSKTEEELKKEKTNSA-ALKNQADSV 583
           E + + K       K+D +  +    EI++ + ++ K +EE  K K + A  LK ++ + 
Sbjct: 256 EAKNLPKPADTSSPKEDKQVAENQKREIEKAQIEIKKNDEEALKAKDHKAFDLKQESKAS 315

Query: 584 GKEYDRLLKEHEKVQKVVTEQGDK 607
            KE +    E +K ++ V E   K
Sbjct: 316 EKEAEDKELEAQKKREPVAEDLQK 339

This family consists of several Borrelia P83/P100 antigen proteins. Length = 489

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 45.5 bits (107), Expect = 8e-05
 Identities = 34/131 (25%), Positives = 63/131 (48%), Gaps = 12/131 (9%)

Query: 481  SDEIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKK 540
            + E  + + + +  E E  +EK  +A  K +     K+ D   K+ E+ +K   ++  KK
Sbjct: 1344 AAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAK--KKADAAKKKAEEKKK--ADEAKKK 1399

Query: 541  DDKYQKGDSDEIKRLKEKLSKTEEELKK---EKTNSAALKNQADSVGKEYDRLLKEHEKV 597
             ++ +K  +DE+K+      K  +E KK   EK  +   K +A+   K+ D   K+ E+ 
Sbjct: 1400 AEEDKK-KADELKK-AAAAKKKADEAKKKAEEKKKADEAKKKAEE-AKKADEAKKKAEEA 1456

Query: 598  QKVVTEQGDKK 608
            +K   E+  KK
Sbjct: 1457 KK--AEEAKKK 1465

Length = 2084

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 45.5 bits (108), Expect = 9e-05
 Identities = 28/124 (22%), Positives = 63/124 (50%), Gaps = 9/124 (7%)

Query: 482 DEIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKKD 541
           + ++ L+E+L   EE L K K     L+ +  ++ +E + L +E E+ ++ +     + +
Sbjct: 758 ERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELE 817

Query: 542 DKYQKGDS--DEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQK 599
              Q+ +    EI+ L+E++ + EE+L         L+ + + + KE + L +E E+++ 
Sbjct: 818 SLEQRRERLEQEIEELEEEIEELEEKL-------DELEEELEELEKELEELKEELEELEA 870

Query: 600 VVTE 603
              E
Sbjct: 871 EKEE 874

Length = 1163

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 44.7 bits (106), Expect = 1e-04
 Identities = 23/132 (17%), Positives = 62/132 (46%), Gaps = 9/132 (6%)

Query: 481 SDEIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKK 540
           ++E   LKE+L     EL++     A  + +     ++ ++L +E  ++++ +    ++ 
Sbjct: 356 TEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEEL 415

Query: 541 DDKYQKGD--SDEIKRLKEKLSKTEE-------ELKKEKTNSAALKNQADSVGKEYDRLL 591
               ++    +  I  ++ K+++ EE       E+KK++     L        +E   L 
Sbjct: 416 QRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLK 475

Query: 592 KEHEKVQKVVTE 603
           +E+++V+K +++
Sbjct: 476 EEYDRVEKELSK 487

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 44.8 bits (106), Expect = 1e-04
 Identities = 29/135 (21%), Positives = 69/135 (51%), Gaps = 4/135 (2%)

Query: 462 ESSKRCEIFEQCDKGLEGDSDEIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDR 521
           + S+  E  E   + LE +  E+K+L+E   + EEE  +++    AL+ +   + +E +R
Sbjct: 193 QLSELLEDIEDLLEALEEELKELKKLEEIQEEQEEEELEQEIE--ALEERLAELEEEKER 250

Query: 522 LLKEHEKVQKVVTEQGDKKDDKYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQAD 581
           L +   ++ ++ + + +    K ++ +  E++RL E+L +  E L++ +     L+ + +
Sbjct: 251 LEELKARLLEIESLELEA--LKIREEELRELERLLEELEEKIERLEELEREIEELEEELE 308

Query: 582 SVGKEYDRLLKEHEK 596
            +    + L +  EK
Sbjct: 309 GLRALLEELEELLEK 323

Length = 908

>gnl|CDD|197874 smart00787, Spc7, Spc7 kinetochore protein

 Score = 44.2 bits (105), Expect = 1e-04
 Identities = 25/112 (22%), Positives = 50/112 (44%), Gaps = 6/112 (5%)

Query: 480 DSDEIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDK 539
           D  E+ R KEKL K  +E+  +      L+ +   +  + + L  +  ++   + E  +K
Sbjct: 202 DPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEA-EK 260

Query: 540 KDDKYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLL 591
           K ++ +     EI++LKE+L   +       T     K   +++   YDR +
Sbjct: 261 KLEQCRGFTFKEIEKLKEQLKLLQ-----SLTGWKITKLSGNTLSMTYDREI 307

This domain is found in cell division proteins which are required for kinetochore-spindle association. Length = 312

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 43.9 bits (104), Expect = 2e-04
 Identities = 30/142 (21%), Positives = 64/142 (45%), Gaps = 13/142 (9%)

Query: 468 EIFEQCDKGLEGDSDEIKRLKE------KLSKTEEELKKEKTNSAALKSQADSVGKEYDR 521
           E+ E   + +E   + +K L+       +L   E+EL++E+     L+ + D   +E   
Sbjct: 578 ELEELGFESVEELEERLKELEPFYNEYLELKDAEKELEREEKELKKLEEELDKAFEELAE 637

Query: 522 LLKEHEKVQKVVTEQGDKKDDKYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQAD 581
             K  E+++K + E   K  ++  +   +E   L  +L+    EL+        L+ + +
Sbjct: 638 TEKRLEELRKELEELEKKYSEEEYEELREEYLELSRELAGLRAELE-------ELEKRRE 690

Query: 582 SVGKEYDRLLKEHEKVQKVVTE 603
            + K  ++L +E E+ +K   E
Sbjct: 691 EIKKTLEKLKEELEEREKAKKE 712

Length = 880

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 44.7 bits (106), Expect = 2e-04
 Identities = 25/126 (19%), Positives = 62/126 (49%), Gaps = 12/126 (9%)

Query: 471 EQCDKGLEGDSDEIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQ 530
              ++ +     E++  +E+L+K E E+ K       L ++ + + +E +   K  +K+ 
Sbjct: 304 ASLERSIAEKERELEDAEERLAKLEAEIDK-------LLAEIEELEREIEEERKRRDKLT 356

Query: 531 KVVTEQGDKKDDKYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRL 590
           +   E  ++ +D        E++ + ++ ++T +ELK  +     LK + + + +E DRL
Sbjct: 357 EEYAELKEELEDLRA-----ELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRL 411

Query: 591 LKEHEK 596
            +E ++
Sbjct: 412 QEELQR 417

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 43.9 bits (104), Expect = 3e-04
 Identities = 35/139 (25%), Positives = 66/139 (47%), Gaps = 13/139 (9%)

Query: 462 ESSKRCEIFEQCDKGLEGDSDEIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDR 521
           E  K  E  E   + LE    E++   E+L K  EEL+++      LK +A    +EY +
Sbjct: 242 ELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKA----EEYIK 297

Query: 522 LLKEHEKVQKVVTEQGDKKDDKYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQAD 581
           L + +E+    + E  +K+  +      +EI  ++E++ + EE  K+E+     LK +  
Sbjct: 298 LSEFYEEYLDELRE-IEKRLSRL----EEEINGIEERIKELEE--KEERLEE--LKKKLK 348

Query: 582 SVGKEYDRLLKEHEKVQKV 600
            + K  + L + HE  ++ 
Sbjct: 349 ELEKRLEELEERHELYEEA 367

Length = 880

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 44.0 bits (103), Expect = 3e-04
 Identities = 37/136 (27%), Positives = 63/136 (46%), Gaps = 13/136 (9%)

Query: 481  SDEIKRLKEKLSKTEEELKK--EKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGD 538
            +DE K+  E+  K EE  KK  E   +   K +A+   K+ D   K+ E+ +K   E   
Sbjct: 1446 ADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEE-AKKADEAKKKAEEAKKKADEAKK 1504

Query: 539  KKDDKYQKGDSDEIKRLKEK-----LSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKE 593
              + K +   +DE K+ +E        K EE  K ++   A  K +AD + K  +  LK+
Sbjct: 1505 AAEAKKK---ADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEE--LKK 1559

Query: 594  HEKVQKVVTEQGDKKD 609
             E+ +K    +  ++D
Sbjct: 1560 AEEKKKAEEAKKAEED 1575

Length = 2084

>gnl|CDD|197874 smart00787, Spc7, Spc7 kinetochore protein

 Score = 42.7 bits (101), Expect = 3e-04
 Identities = 24/100 (24%), Positives = 42/100 (42%), Gaps = 12/100 (12%)

Query: 484 IKRLKEKLSKTEEELKKEKTN----SAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDK 539
           ++ LKE L +  E LK++          L S    +    D L +E  +++++  E  D 
Sbjct: 142 LEGLKEGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDC 201

Query: 540 KDDKYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQ 579
                   D  E+ R KEKL K  +E+  +      L+ +
Sbjct: 202 --------DPTELDRAKEKLKKLLQEIMIKVKKLEELEEE 233

This domain is found in cell division proteins which are required for kinetochore-spindle association. Length = 312

>gnl|CDD|214655 smart00423, PSI, domain found in Plexins, Semaphorins and Integrins

 Score = 37.9 bits (88), Expect = 4e-04
 Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 2/40 (5%)

Query: 439 CRDLANNCGLCLALPEKYGCGWCESSKRCEIFEQCDKGLE 478
           C     +C  CL   + Y C WC S  RC   E+CD   +
Sbjct: 2   CS-KYTSCSECLLARDPY-CAWCSSQGRCTSGERCDSRRQ 39

Length = 47

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 43.5 bits (103), Expect = 4e-04
 Identities = 28/133 (21%), Positives = 66/133 (49%), Gaps = 9/133 (6%)

Query: 477 LEGDSDEIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRL---LKEHEKVQKVV 533
           LE   +  + L+E+L++ E EL + +     LK + +S+ +  +RL   L++ ++  K +
Sbjct: 371 LEELEELFEALREELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKEL 430

Query: 534 TEQGDKKDDKYQKGDS------DEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEY 587
             + ++   + ++ +       ++++ L+++L + E EL + +     L+ +  S+    
Sbjct: 431 EAELEELQTELEELNEELEELEEQLEELRDRLKELERELAELQEELQRLEKELSSLEARL 490

Query: 588 DRLLKEHEKVQKV 600
           DRL  E    Q V
Sbjct: 491 DRLEAEQRASQGV 503

Length = 1163

>gnl|CDD|219791 pfam08317, Spc7, Spc7 kinetochore protein

 Score = 42.7 bits (101), Expect = 4e-04
 Identities = 13/86 (15%), Positives = 42/86 (48%), Gaps = 1/86 (1%)

Query: 480 DSDEIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDK 539
           D  E+++ +++L     ++ +++     L+ +   +    + L  +  ++ + + E  +K
Sbjct: 205 DPLELEKARQELRSLSVKISEKRKQLEELQQELQELTIAIEALTNKKSELLEEIAEA-EK 263

Query: 540 KDDKYQKGDSDEIKRLKEKLSKTEEE 565
             ++ +   + EI +LK K+S  ++ 
Sbjct: 264 IREECRGWSAKEISKLKAKVSLLQKL 289

This domain is found in cell division proteins which are required for kinetochore-spindle association. Length = 321

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 42.8 bits (101), Expect = 6e-04
 Identities = 29/131 (22%), Positives = 75/131 (57%), Gaps = 2/131 (1%)

Query: 471 EQCDKGLEGDSDEIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQ 530
           E+  + LE    +++ LK +L+  EEEL++ ++    L+ + + + +E + L +  E+++
Sbjct: 705 EELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELE 764

Query: 531 KVVTEQGDK--KDDKYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYD 588
           + +    +   K  +  +   ++ + L+E+L + EEEL++ +    AL+ + +S+ +  +
Sbjct: 765 EELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRE 824

Query: 589 RLLKEHEKVQK 599
           RL +E E++++
Sbjct: 825 RLEQEIEELEE 835

Length = 1163

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 42.8 bits (100), Expect = 6e-04
 Identities = 29/128 (22%), Positives = 57/128 (44%), Gaps = 6/128 (4%)

Query: 481  SDEIKRLKEKLSKTEEELKK---EKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQG 537
            +DE K+ +EK  K  +E KK   E   +   K +A+   K+ D   K+ E+ +K      
Sbjct: 1292 ADEAKKAEEK--KKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAK 1349

Query: 538  DKKDDKYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAAL-KNQADSVGKEYDRLLKEHEK 596
             + +    + ++ E K    +  K E + K +     A  K +AD   K+ +   K+ ++
Sbjct: 1350 AEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADE 1409

Query: 597  VQKVVTEQ 604
            ++K    +
Sbjct: 1410 LKKAAAAK 1417

Length = 2084

>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain

 Score = 42.6 bits (100), Expect = 6e-04
 Identities = 28/133 (21%), Positives = 58/133 (43%), Gaps = 6/133 (4%)

Query: 480 DSDEIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQK----VVTE 535
           D +++K  +++L K E+ELKKEK     L+ +   +     R  +E E+ Q        E
Sbjct: 313 DEEKLKESEKELKKLEKELKKEKEEIEELEKELKELEI--KREAEEEEEEQLEKLQEKLE 370

Query: 536 QGDKKDDKYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHE 595
           Q +++    +K +S+ +    +   +  E   +E+  +  L   ++          KE  
Sbjct: 371 QLEEELLAKKKLESERLSSAAKLKEEELELKNEEEKEAKLLLELSEQEEDLLKEEKKEEL 430

Query: 596 KVQKVVTEQGDKK 608
           K+ + + E  + K
Sbjct: 431 KIVEELEESLETK 443

This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination. Length = 1162

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 42.4 bits (99), Expect = 7e-04
 Identities = 34/133 (25%), Positives = 63/133 (47%), Gaps = 9/133 (6%)

Query: 478  EGDSDEIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQG 537
            E  +DE +  +EK    E++ ++ K  + A K +A+   K+ D   K+ E+ +K   E  
Sbjct: 1353 EAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEK-KKADEAKKKAEEDKKKADELK 1411

Query: 538  DKKDDKYQKGDSDEIKRLKEKLSKTEEELKK--EKTNSAALKNQADSVGKEYDRLLKEHE 595
                 K +   +DE K+  E+  K +E  KK  E   +   K +A+   K+ +   K+ E
Sbjct: 1412 KAAAAKKK---ADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEE-AKKAEEAKKKAE 1467

Query: 596  KVQKVVTEQGDKK 608
            + +K   ++  KK
Sbjct: 1468 EAKK--ADEAKKK 1478

Length = 2084

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 42.4 bits (99), Expect = 7e-04
 Identities = 39/154 (25%), Positives = 71/154 (46%), Gaps = 10/154 (6%)

Query: 462  ESSKRCEIFEQCDKGLEGDSDEIKRLKEKLSKTEEELKKE---KTNSAALKSQADSVGKE 518
            E ++  E+ +  ++  +  ++E K+ +E   K EE  K E   K      K +A+   K 
Sbjct: 1590 EEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKA 1649

Query: 519  YDRLLKEHEKVQKVVTEQGDKKDDKYQKGDSDEIKRLKEKLSKTEEELKK---EKTNSAA 575
             +  LK+ E+  K+   +  KK ++  K  ++E K+ +E   K  E LKK   E   +  
Sbjct: 1650 EE--LKKAEEENKIKAAEEAKKAEE-DKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEE 1706

Query: 576  LKNQADSVGKEYDRLLKEHEKVQKVVTEQGDKKD 609
            LK +     K+ + L K  E+  K+  E+  K+ 
Sbjct: 1707 LKKKEAEEKKKAEELKKA-EEENKIKAEEAKKEA 1739

Length = 2084

>gnl|CDD|219791 pfam08317, Spc7, Spc7 kinetochore protein

 Score = 41.6 bits (98), Expect = 8e-04
 Identities = 15/104 (14%), Positives = 45/104 (43%), Gaps = 12/104 (11%)

Query: 484 IKRLKEKLSKTEEELKKEKT----NSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDK 539
           ++ LKE L +  E +K+++     +   + S    + K+   L +E   ++++  E    
Sbjct: 145 LEGLKEGLEENLEGMKRDEELLNKDLNLINSIKPKLRKKLQALKEEIASLRQLADELNLC 204

Query: 540 KDDKYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSV 583
                   D  E+++ +++L     ++ +++     L+ +   +
Sbjct: 205 --------DPLELEKARQELRSLSVKISEKRKQLEELQQELQEL 240

This domain is found in cell division proteins which are required for kinetochore-spindle association. Length = 321

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 41.6 bits (98), Expect = 0.001
 Identities = 27/131 (20%), Positives = 60/131 (45%), Gaps = 8/131 (6%)

Query: 462 ESSKRCEIFEQCDKGLEGDSDEIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDR 521
           E  KR    E+   G+E    E++  +E+L + +++LK+ +     L+ +     + Y+ 
Sbjct: 311 EIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERH----ELYEE 366

Query: 522 LLKEHEKVQKVVTEQGDKKDDKYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQAD 581
              + E+++++         +K +K    E++ L++   + EEE+ K       LK +  
Sbjct: 367 AKAKKEELERLKKRLTGLTPEKLEK----ELEELEKAKEEIEEEISKITARIGELKKEIK 422

Query: 582 SVGKEYDRLLK 592
            + K  + L K
Sbjct: 423 ELKKAIEELKK 433

Length = 880

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 41.2 bits (97), Expect = 0.001
 Identities = 30/124 (24%), Positives = 56/124 (45%), Gaps = 14/124 (11%)

Query: 476 GLEGDSDEIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTE 535
           G E   +  K L E+ +   + ++KE       + +     +E +++LK+  ++ K    
Sbjct: 442 GRELTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIK---- 497

Query: 536 QGDKKDDKYQKGDSDEIKRLKEKLSKTE-EELKKEKTNSAALKNQADSVGKEYDRLLKEH 594
                     K  ++++K L+EKL K   EEL+K+      LK +   +  E   L KE 
Sbjct: 498 ---------LKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKEL 548

Query: 595 EKVQ 598
           EK++
Sbjct: 549 EKLE 552

Length = 880

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 41.6 bits (98), Expect = 0.001
 Identities = 32/142 (22%), Positives = 75/142 (52%), Gaps = 9/142 (6%)

Query: 477 LEGDSDEIKRLKEKLSKTEEELKKEKTNSAAL-------KSQADSVGKEYDRLLKEHEKV 529
           L+   +E+  L+ +L K EEELK  K    +L       + Q + + ++ + L +E   +
Sbjct: 669 LKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAAL 728

Query: 530 QKVVTE-QGDKKD-DKYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEY 587
           ++ + + Q   ++ ++  +   +E++ L+E+L + EEEL+  +   A LK + + + ++ 
Sbjct: 729 EEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKR 788

Query: 588 DRLLKEHEKVQKVVTEQGDKKD 609
             L +E E++++ + E   + D
Sbjct: 789 QALQEELEELEEELEEAERRLD 810

Length = 1163

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 42.0 bits (99), Expect = 0.001
 Identities = 28/140 (20%), Positives = 63/140 (45%), Gaps = 21/140 (15%)

Query: 471 EQCDKGLEGDSDEIKRLKEKLSKTEEELKKEKTNSAALK-----SQADSVGKEYDRLLKE 525
              ++ +E    E+K L+ ++ + EE+L K +     L+     S+   +  E  +L +E
Sbjct: 747 SSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEE 806

Query: 526 HEKVQKVV--TEQGDKKDDKYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSV 583
             +++  +   EQ              ++ RL  +    E+E+++ +     LK Q  S+
Sbjct: 807 VSRIEARLREIEQ--------------KLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSI 852

Query: 584 GKEYDRLLKEHEKVQKVVTE 603
            KE + L  + E++++ + E
Sbjct: 853 EKEIENLNGKKEELEEELEE 872

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|217902 pfam04111, APG6, Autophagy protein Apg6

 Score = 41.4 bits (97), Expect = 0.001
 Identities = 34/130 (26%), Positives = 61/130 (46%), Gaps = 6/130 (4%)

Query: 471 EQCDKGLEGDSDEIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQ 530
           E+ D  L     E    K+ LSK E +  +   N  AL S+ D + KE +RLL E E+++
Sbjct: 32  ERLDSELRDAEKERDTYKQYLSKLESQNVEIS-NYEALDSELDELKKEEERLLDELEELE 90

Query: 531 KVVTEQGDKKDDKYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRL 590
           K    + D  D +  +   ++ +   E+L     E      N+  L++   S+  +Y+  
Sbjct: 91  K----EDDDLDGELVELQEEKEQLENEELQY-LREYNLFDRNNLQLEDNLQSLELQYEYS 145

Query: 591 LKEHEKVQKV 600
           L + +K++K 
Sbjct: 146 LNQLDKLRKT 155

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. Autophagy is a bulk degradation process induced by starvation in eukaryotic cells. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway. Length = 356

>gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed

 Score = 41.7 bits (99), Expect = 0.001
 Identities = 36/147 (24%), Positives = 65/147 (44%), Gaps = 31/147 (21%)

Query: 462 ESSKRC----EIFEQCDKGLEGDSDEIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGK 517
           E +KR      I E+  K +  D +++  L   L + E EL+++   + AL  +A+ + +
Sbjct: 492 EIAKRLGLPENIIEEAKKLIGEDKEKLNELIASLEELERELEQKAEEAEALLKEAEKLKE 551

Query: 518 EY-----------DRLLKE-HEKVQKVVTE------QGDKKDDKYQKGD---------SD 550
           E            D+LL+E  ++ Q+ + E      +  K+  + QKG           +
Sbjct: 552 ELEEKKEKLQEEEDKLLEEAEKEAQQAIKEAKKEADEIIKELRQLQKGGYASVKAHELIE 611

Query: 551 EIKRLKEKLSKTEEELKKEKTNSAALK 577
             KRL +   K E++ KK+K     LK
Sbjct: 612 ARKRLNKANEKKEKKKKKQKEKQEELK 638

Length = 782

>gnl|CDD|224495 COG1579, COG1579, Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

 Score = 40.8 bits (96), Expect = 0.001
 Identities = 29/141 (20%), Positives = 68/141 (48%), Gaps = 7/141 (4%)

Query: 470 FEQCDKGLEGDSDEIKRLKEKLSKTEEELKK--EKTNSAALKSQADSVGKEYDRLLKEHE 527
            E  +K LE    E++ L+ ++S+ E E+++  E+   A  K  A    +E   L  E +
Sbjct: 40  LEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQ 99

Query: 528 KVQKVVTEQGDKKDDKYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEY 587
             +    E+ +  +D+  +   +EI++L++++   +E L++ + N A  + + +    E 
Sbjct: 100 IAK----ERINSLEDELAELM-EEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEI 154

Query: 588 DRLLKEHEKVQKVVTEQGDKK 608
               +E    ++ + E+ D +
Sbjct: 155 REEGQELSSKREELKEKLDPE 175

Length = 239

>gnl|CDD|219838 pfam08432, DUF1742, Fungal protein of unknown function (DUF1742)

 Score = 39.7 bits (93), Expect = 0.001
 Identities = 23/97 (23%), Positives = 38/97 (39%), Gaps = 13/97 (13%)

Query: 482 DEIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKKD 541
            E+    EK+ K  EE +K K      K + D             +   K   ++ DK +
Sbjct: 65  KELAEEIEKVKKEYEEKQKWKWKKKKSKKKKD-------------KDKDKKDDKKDDKSE 111

Query: 542 DKYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKN 578
            K +K   D+++ L +  S+T   L + K    AL  
Sbjct: 112 KKDEKEAEDKLEDLTKSYSETLSTLSELKPRKYALHK 148

This is a family of fungal proteins of unknown function. Length = 182

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 40.8 bits (96), Expect = 0.002
 Identities = 27/124 (21%), Positives = 62/124 (50%), Gaps = 6/124 (4%)

Query: 475 KGLEGDSDEIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVT 534
           K L    +EI  ++E++ + EE  K+E+     LK +   + K  + L + HE  ++   
Sbjct: 314 KRLSRLEEEINGIEERIKELEE--KEERLEE--LKKKLKELEKRLEELEERHELYEEAKA 369

Query: 535 EQGDKKDDKYQKGDS--DEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLK 592
           ++ + +  K +      +++++  E+L K +EE+++E +   A   +     KE  + ++
Sbjct: 370 KKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIE 429

Query: 593 EHEK 596
           E +K
Sbjct: 430 ELKK 433

Length = 880

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 41.3 bits (96), Expect = 0.002
 Identities = 32/127 (25%), Positives = 63/127 (49%), Gaps = 11/127 (8%)

Query: 482  DEIKRLKEKLSKTEEELKKE----KTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQG 537
            +++K+ + +  K  EELKK     K  +A    +A+   K+ +   K  E  +K   E  
Sbjct: 1636 EQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKK-AAEAL 1694

Query: 538  DKKDDKYQKGDSDEIKRLKEKLSKTEEELKKE----KTNSAALKNQADSVGKEYDRLLKE 593
             K+ ++ +K  ++E+K+ + +  K  EELKK     K  +   K +A+   K+ +   K+
Sbjct: 1695 KKEAEEAKK--AEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKD 1752

Query: 594  HEKVQKV 600
             E+ +K+
Sbjct: 1753 EEEKKKI 1759

Length = 2084

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 40.9 bits (95), Expect = 0.002
 Identities = 37/142 (26%), Positives = 63/142 (44%), Gaps = 5/142 (3%)

Query: 471  EQCDKGLEGDSDEIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQ 530
            E+  K  E    E K+  ++L K EE  K E+   A    +A+       R  +E +K +
Sbjct: 1531 EEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAE 1590

Query: 531  KVVTEQGDKKDDKYQKGDSDEIKRLKEKLSKTEEELKKE---KTNSAALKNQADSVGKEY 587
            +   E+  K  ++ +K  ++E K+ +E   K EE  K E   K      K +A+   K  
Sbjct: 1591 EARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAE 1650

Query: 588  DRLLKEHEKVQKVVTEQGDKKD 609
            +  LK+ E+  K+   +  KK 
Sbjct: 1651 E--LKKAEEENKIKAAEEAKKA 1670

Length = 2084

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 40.9 bits (96), Expect = 0.002
 Identities = 29/122 (23%), Positives = 64/122 (52%), Gaps = 8/122 (6%)

Query: 482 DEIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKKD 541
           +E++ L EKL   EE L+K +     L+S+     +E      E  K+ +   ++ +++ 
Sbjct: 315 EELEELLEKLKSLEERLEKLEEKLEKLESE----LEELAEEKNELAKLLEERLKELEERL 370

Query: 542 DKYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQKVV 601
           ++ +K    E+++  E+L + EE +++ K   A L    + + +E + L KE E++++ +
Sbjct: 371 EELEK----ELEKALERLKQLEEAIQELKEELAELSAALEEIQEELEELEKELEELEREL 426

Query: 602 TE 603
            E
Sbjct: 427 EE 428

Length = 908

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 41.2 bits (97), Expect = 0.002
 Identities = 25/130 (19%), Positives = 62/130 (47%), Gaps = 6/130 (4%)

Query: 471 EQCDKGLEGD----SDEIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEH 526
           E+  + LE         +  L+++L + EEEL++ +     L  Q  ++ K+  RL  E 
Sbjct: 683 EEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEV 742

Query: 527 EKVQKVVTEQGD--KKDDKYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVG 584
           E++++ + +      + +   +   + ++  +E+L++ E E+++ +     LK +  ++ 
Sbjct: 743 EQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALR 802

Query: 585 KEYDRLLKEH 594
           +  D L  E 
Sbjct: 803 EALDELRAEL 812

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|198139 smart01071, CDC37_N, Cdc37 N terminal kinase binding

 Score = 38.9 bits (91), Expect = 0.002
 Identities = 22/94 (23%), Positives = 45/94 (47%), Gaps = 4/94 (4%)

Query: 483 EIKRLKEKLSKTEEELK-KEKTNSAALKSQADSVGKEYDRLLKE-HEKVQKVVTEQGDKK 540
           EIK LK +L   +   K  +K      + +       Y+ +L E  ++++K + E     
Sbjct: 47  EIKNLKYELIMNDHLNKRIDKLLKGLREEELSPETPTYNEMLAELQDQLKKELEEANGDS 106

Query: 541 DDKYQ--KGDSDEIKRLKEKLSKTEEELKKEKTN 572
           +   +  K   D++K+ +++L K  +EL+KE+  
Sbjct: 107 EGLLEELKKHRDKLKKEQKELRKKLDELEKEEKK 140

Cdc37 is a molecular chaperone required for the activity of numerous eukaryotic protein kinases. This domain corresponds to the N terminal domain which binds predominantly to protein kinases.and is found N terminal to the Hsp (Heat shocked protein) 90-binding domain. Expression of a construct consisting of only the N-terminal domain of Saccharomyces pombe Cdc37 results in cellular viability. This indicates that interactions with the cochaperone Hsp90 may not be essential for Cdc37 function. Length = 154

>gnl|CDD|220614 pfam10174, Cast, RIM-binding protein of the cytomatrix active zone

 Score = 40.8 bits (95), Expect = 0.002
 Identities = 43/156 (27%), Positives = 72/156 (46%), Gaps = 28/156 (17%)

Query: 462 ESSKRCEIFEQCDKGLEGDSDEIKRLKEKLSKTEEELKKEKTNS-----------AALKS 510
           E SK      +    LE    E+++++EK  K E+ELK+ + N               +S
Sbjct: 501 EVSKLASNQLKQRSDLERAHIELEKIREKHEKLEKELKRLRANPESADRGSAVDAGTSRS 560

Query: 511 QADSVG--KEYDRLLKEHEKVQKVVTEQGDKKDDKYQKGDSDEIKRLKEKLSKTEEELKK 568
           +ADS G   E DRLL   EK ++       ++DD        E  RL ++L K +  L K
Sbjct: 561 RADSAGARNEVDRLLDRLEKAEQ-------ERDDT-----EMEAGRLAKELEKAQRHLTK 608

Query: 569 EKTNSAALKNQADSVGKEYDRLLKEHEKVQKVVTEQ 604
           ++  + A + + +    E   LL+E E+++K   E+
Sbjct: 609 QQEKTEATRIEFERKSAE---LLEEAERLEKSEAEE 641

This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains. Length = 774

>gnl|CDD|202427 pfam02841, GBP_C, Guanylate-binding protein, C-terminal domain

 Score = 40.3 bits (95), Expect = 0.002
 Identities = 26/141 (18%), Positives = 63/141 (44%), Gaps = 32/141 (22%)

Query: 468 EIFEQCDKGLEGDSDEIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHE 527
           E+ ++     E   + I +  + L+  E+ ++ E+  + A +++ +        LL+E +
Sbjct: 176 EVLQEFLNSKEAVEEAILQTDQALTAKEKAIEAERAKAEAAEAEQE--------LLREKQ 227

Query: 528 KVQKVVTEQGDKKDDKYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEY 587
           K ++ + E    ++  YQ    + +K+L EK+    E+L  E+                 
Sbjct: 228 KEEEQMMEA---QERSYQ----EHVKQLIEKMEAEREKLLAEQ----------------- 263

Query: 588 DRLLKEHEKVQKVVTEQGDKK 608
           +R+L+   + Q+ + ++G K 
Sbjct: 264 ERMLEHKLQEQEELLKEGFKT 284

Transcription of the anti-viral guanylate-binding protein (GBP) is induced by interferon-gamma during macrophage induction. This family contains GBP1 and GPB2, both GTPases capable of binding GTP, GDP and GMP. Length = 297

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 40.4 bits (95), Expect = 0.003
 Identities = 28/134 (20%), Positives = 64/134 (47%), Gaps = 25/134 (18%)

Query: 483 EIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKKDD 542
           + + ++ +L+  EEEL+K       L  +   + K  + + +  E++ K + + G     
Sbjct: 238 QKEAIERQLASLEEELEK-------LTEEISELEKRLEEIEQLLEELNKKIKDLG----- 285

Query: 543 KYQKGDSDEIKRLKEKLSKTEEELKK-EKTNSAALKNQADSVGK------EYDRLLKEHE 595
                  +E  R+KEK+ + E E+   E++ +   +   D+  +      E D+LL E E
Sbjct: 286 ------EEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIE 339

Query: 596 KVQKVVTEQGDKKD 609
           ++++ + E+  ++D
Sbjct: 340 ELEREIEEERKRRD 353

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 40.4 bits (95), Expect = 0.003
 Identities = 27/132 (20%), Positives = 63/132 (47%), Gaps = 9/132 (6%)

Query: 482 DEIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKKD 541
           +E++ L+E+L + EEEL++       L+ + + +  E   L +E E++QK +    ++  
Sbjct: 239 EELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEIS 298

Query: 542 DKYQ---------KGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLK 592
              Q              +++ L+ +L + E +L +     A L+ + + + +E + L  
Sbjct: 299 RLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEA 358

Query: 593 EHEKVQKVVTEQ 604
           E E+++  + E 
Sbjct: 359 ELEELEAELEEL 370

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional

 Score = 40.5 bits (96), Expect = 0.003
 Identities = 21/93 (22%), Positives = 50/93 (53%), Gaps = 5/93 (5%)

Query: 482 DEIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKKD 541
           +E+++L+++L + EE L ++       + + +   KE ++  +E EK ++ + E  +++ 
Sbjct: 82  NELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQL 141

Query: 542 DKYQK--G-DSDEIKRLKEKLSKTEEELKKEKT 571
            + ++  G  ++E K  +  L K EEE + E  
Sbjct: 142 QELERISGLTAEEAK--EILLEKVEEEARHEAA 172

Length = 520

>gnl|CDD|222417 pfam13851, GAS, Growth-arrest specific micro-tubule binding

 Score = 38.4 bits (90), Expect = 0.004
 Identities = 29/114 (25%), Positives = 56/114 (49%), Gaps = 4/114 (3%)

Query: 480 DSDEIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDK 539
           D   +K LK +L + E+ELK  K  S  L+ + + V +E D L  + E   + V ++   
Sbjct: 84  DKQSLKNLKARLKELEKELKNLKWESEVLEQRFEKVERERDELYDKFEAAIQDVQQKTGL 143

Query: 540 KDDKYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKE 593
           K+   ++    +++ L E+L K E +L +    +        +V ++ D +L+E
Sbjct: 144 KNLLLEQ----KLEALNEELEKKEAQLNEVLAAANLDPAALQAVSEKLDDVLEE 193

This family is the highly conserved central region of a number of metazoan proteins referred to as growth-arrest proteins. In mouse, Gas8 is predominantly a testicular protein, whose expression is developmentally regulated during puberty and spermatogenesis. In humans, it is absent in infertile males who lack the ability to generate gametes. The localisation of Gas8 in the motility apparatus of post-meiotic gametocytes and mature spermatozoa, together with the detection of Gas8 also in cilia at the apical surfaces of epithelial cells lining the pulmonary bronchi and Fallopian tubes suggests that the Gas8 protein may have a role in the functioning of motile cellular appendages. Gas8 is a microtubule-binding protein localised to regions of dynein regulation in mammalian cells. Length = 201

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 39.7 bits (93), Expect = 0.004
 Identities = 31/138 (22%), Positives = 76/138 (55%), Gaps = 7/138 (5%)

Query: 463 SSKRCEIFEQCDKGLEGDSDEIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRL 522
           SS+  E+ E+ +K LE +  E++ LKE++ + E+EL+  + +   L+ +   + +  + L
Sbjct: 213 SSELPELREELEK-LEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEEL 271

Query: 523 LKEHEKVQKVVTEQGDKKDDKYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADS 582
            KE E++++ V      K+ K  K  ++E  +L E   +  +EL++ +   + L+ + + 
Sbjct: 272 KKEIEELEEKV------KELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEING 325

Query: 583 VGKEYDRLLKEHEKVQKV 600
           + +    L ++ E+++++
Sbjct: 326 IEERIKELEEKEERLEEL 343

Length = 880

>gnl|CDD|224755 COG1842, PspA, Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]

 Score = 38.8 bits (91), Expect = 0.004
 Identities = 24/143 (16%), Positives = 56/143 (39%), Gaps = 9/143 (6%)

Query: 474 DKGLEGDSDEIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVV 533
           ++ L+   D  K L++ +   E EL K +   A   ++   + ++ +      EK+++  
Sbjct: 16  NELLDKAEDPEKMLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKA 75

Query: 534 TEQGDKKDDKYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKE 593
                  ++   +   +E + L++     E EL++ +     LK Q  ++ ++   L  +
Sbjct: 76  ELALQAGNEDLAREALEEKQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAK 135

Query: 594 HE---------KVQKVVTEQGDK 607
            E         K Q+ V      
Sbjct: 136 KEALKARKAAAKAQEKVNRSLGG 158

Length = 225

>gnl|CDD|130141 TIGR01069, mutS2, MutS2 family protein

 Score = 39.8 bits (93), Expect = 0.004
 Identities = 33/144 (22%), Positives = 61/144 (42%), Gaps = 18/144 (12%)

Query: 468 EIFEQCDKGLEGDSDEIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHE 527
            I EQ         +EI  L EKLS  E+EL+++  +               ++LLKE E
Sbjct: 497 FIIEQAKTFYGEFKEEINVLIEKLSALEKELEQKNEHL--------------EKLLKEQE 542

Query: 528 KVQKVVTEQGDKKDDKYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEY 587
           K++K + ++ ++  ++ +    +  K  +E L   ++E++         K       K  
Sbjct: 543 KLKKELEQEMEELKERERNKKLELEKEAQEALKALKKEVESIIRELKEKKIHKAKEIKSI 602

Query: 588 DRLLK----EHEKVQKVVTEQGDK 607
           + L+K    + +  QK    Q DK
Sbjct: 603 EDLVKLKETKQKIPQKPTNFQADK 626

Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function [DNA metabolism, Other]. Length = 771

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	609
PF05529	192	Bap31: B-cell receptor-associated protein 31-like	100.0
KOG1962|consensus	216		100.0
COG5374	192	Uncharacterized conserved protein [Function unknow	99.96
KOG1962|consensus	216		99.67
PF05529	192	Bap31: B-cell receptor-associated protein 31-like	98.97
PF01437	51	PSI: Plexin repeat; InterPro: IPR002165 This is a	97.82
smart00423	46	PSI domain found in Plexins, Semaphorins and Integ	97.21
KOG3610|consensus	1025		97.06
PF14662	193	CCDC155: Coiled-coil region of CCDC155	96.23
PF01437	51	PSI: Plexin repeat; InterPro: IPR002165 This is a	95.43
PF14662	193	CCDC155: Coiled-coil region of CCDC155	95.36
PF02183	45	HALZ: Homeobox associated leucine zipper; InterPro	95.32
PF10186	302	Atg14: UV radiation resistance protein and autopha	95.26
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	95.14
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	94.32
PF07926	132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	94.03
smart00423	46	PSI domain found in Plexins, Semaphorins and Integ	93.98
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	93.47
TIGR03752	472	conj_TIGR03752 integrating conjugative element pro	93.37
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	93.25
PRK09039	343	hypothetical protein; Validated	93.12
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	93.03
PF04156	191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	92.94
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	92.85
COG4372	499	Uncharacterized protein conserved in bacteria with	92.76
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	92.59
PRK09039	343	hypothetical protein; Validated	92.53
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	92.26
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	92.12
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	91.85
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	91.71
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	91.54
KOG0971|consensus	1243		91.31
PF06810	155	Phage_GP20: Phage minor structural protein GP20; I	91.29
KOG0996|consensus	1293		91.27
PF11559	151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	91.19
PF10211	189	Ax_dynein_light: Axonemal dynein light chain; Inte	91.16
PF04849	306	HAP1_N: HAP1 N-terminal conserved region; InterPro	90.65
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	90.64
PF10205	102	KLRAQ: Predicted coiled-coil domain-containing pro	90.62
PRK11637	428	AmiB activator; Provisional	90.62
COG5374	192	Uncharacterized conserved protein [Function unknow	90.55
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	90.53
KOG0995|consensus	581		90.53
PF11559	151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	90.36
PF05266	190	DUF724: Protein of unknown function (DUF724); Inte	90.3
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	89.89
PRK10884	206	SH3 domain-containing protein; Provisional	89.87
KOG0995|consensus	581		89.85
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	88.96
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	88.95
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	88.91
KOG0933|consensus	1174		88.74
KOG0994|consensus	1758		88.36
PF00038	312	Filament: Intermediate filament protein; InterPro:	88.19
PRK10884	206	SH3 domain-containing protein; Provisional	87.91
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	87.78
KOG1003|consensus	205		87.68
PF15254	861	CCDC14: Coiled-coil domain-containing protein 14	87.59
KOG4674|consensus	1822		87.25
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	87.24
PRK04863	1486	mukB cell division protein MukB; Provisional	86.84
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	86.75
COG5185	622	HEC1 Protein involved in chromosome segregation, i	86.74
COG1842	225	PspA Phage shock protein A (IM30), suppresses sigm	86.67
COG1382	119	GimC Prefoldin, chaperonin cofactor [Posttranslati	86.63
KOG0996|consensus	1293		86.56
PF14235	157	DUF4337: Domain of unknown function (DUF4337)	86.5
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	86.49
PF09744	158	Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; Inte	86.42
PRK11281	1113	hypothetical protein; Provisional	86.03
PF06818	202	Fez1: Fez1; InterPro: IPR009638 This family repres	85.76
KOG0977|consensus	546		85.69
PF15619	194	Lebercilin: Ciliary protein causing Leber congenit	85.64
PRK10929	1109	putative mechanosensitive channel protein; Provisi	85.59
PRK02224	880	chromosome segregation protein; Provisional	85.47
PF10498	359	IFT57: Intra-flagellar transport protein 57 ; Inte	85.31
PF10146	230	zf-C4H2: Zinc finger-containing protein ; InterPro	84.77
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	84.7
PF06156	107	DUF972: Protein of unknown function (DUF972); Inte	84.52
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	84.18
TIGR02894	161	DNA_bind_RsfA transcription factor, RsfA family. I	83.99
PF09738	302	DUF2051: Double stranded RNA binding protein (DUF2	83.98
COG4372	499	Uncharacterized protein conserved in bacteria with	83.86
KOG0933|consensus	1174		83.81
PHA02562	562	46 endonuclease subunit; Provisional	83.58
KOG0980|consensus	980		83.39
PF04156	191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	83.36
smart00503	117	SynN Syntaxin N-terminal domain. Three-helix domai	83.33
PF10234	267	Cluap1: Clusterin-associated protein-1; InterPro:	83.32
PRK15422	79	septal ring assembly protein ZapB; Provisional	83.01
PF00038	312	Filament: Intermediate filament protein; InterPro:	82.97
PF07106	169	TBPIP: Tat binding protein 1(TBP-1)-interacting pr	82.93
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	82.85
PRK09841	726	cryptic autophosphorylating protein tyrosine kinas	82.61
PF05483	786	SCP-1: Synaptonemal complex protein 1 (SCP-1); Int	82.5
PF10883	87	DUF2681: Protein of unknown function (DUF2681); In	82.35
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	82.27
PRK04778	569	septation ring formation regulator EzrA; Provision	82.01
KOG4360|consensus	596		81.65
TIGR03007	498	pepcterm_ChnLen polysaccharide chain length determ	81.64
PF10481	307	CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0	81.62
TIGR02894	161	DNA_bind_RsfA transcription factor, RsfA family. I	81.37
PF11932	251	DUF3450: Protein of unknown function (DUF3450); In	81.28
KOG0977|consensus	546		81.27
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	80.81
PF07798	177	DUF1640: Protein of unknown function (DUF1640); In	80.74
PF02403	108	Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal dom	80.71
KOG4403|consensus	575		80.66
PF11544	76	Spc42p: Spindle pole body component Spc42p; InterP	80.65
KOG3611|consensus	737		80.64
COG1730	145	GIM5 Predicted prefoldin, molecular chaperone impl	80.45
COG1340	294	Uncharacterized archaeal coiled-coil protein [Func	80.3
PRK11519	719	tyrosine kinase; Provisional	80.26
PF07926	132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	80.13
PF13870	177	DUF4201: Domain of unknown function (DUF4201)	80.07

>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8

Probab=100.00  E-value=4.6e-37  Score=300.75  Aligned_cols=156  Identities=45%  Similarity=0.577  Sum_probs=137.4

Q ss_pred             CcchHHHHHHHHHHHHHHHHHHHcCCchhHHHHhhhhhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHhccCcccc-
Q psy114            1 MSLQWTLIATVLYFEMAFMLLLILPILSTQRLHKILKSKFVQGVKTQAGWYFGCILVILSLFFLDAIREMRKYASPEVK-   79 (609)
Q Consensus         1 Msl~~~lv~~~L~~E~~~~~lL~lP~p~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lf~Ds~~~~~k~~~~~~~-   79 (609)
                      |||||++||++||+||+++++|++|+|+++| +++|++........+++++++++++++++||+||+++|+||+.+... 
T Consensus         1 Msl~~~lvf~~L~~Ei~~~~lL~lPlp~~~R-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~lf~ds~~~~~k~~~~~~~~   79 (192)
T PF05529_consen    1 MSLQWSLVFGLLYAEIAVLLLLVLPLPSPIR-RKIFKFLDKSFFSGKFKTVFKILLAILLLLFLDSIRRMYKYSSEYEEA   79 (192)
T ss_pred             CccHHHHHHHHHHHHHHHHHHHHHhCCcHHH-HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Confidence            9999999999999999999999999999999 57877666656677788999999999999999999999999876532 


Q ss_pred             cccCCCCC-HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCc
Q psy114           80 EEAHGHLD-AEMQNNMKLFRAQRNFYISGFSLFLWLVIRQIIQLIAQQANLLAQNEASMNQARQAAVAAQALLDGPRGK  157 (609)
Q Consensus        80 ~~~~~~~~-~~~~~~~~~f~aQRN~YisGf~LfL~lvi~r~~~li~~~~~l~~~~~a~~kqa~~a~~~a~~~~~~~~~~  157 (609)
                      ...+.+++ +++|++||+||||||+||+||+|||+|+|+|++++|+++..++++.++++||++++++.++++.++...+
T Consensus        80 ~~~~~~~~~~~~~~~~~~fraQRN~YIsGf~LfL~l~I~r~~~li~~l~~~~~~~~~~~kq~~~~~~~~~~~~~~~~~~  158 (192)
T PF05529_consen   80 KDDHPNPDRTEDQVLAKKFRAQRNMYISGFALFLSLVIRRVHSLIKELIKLEEKLEALKKQAESASEAAEKLLKEENKK  158 (192)
T ss_pred             cccCCCccchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhh
Confidence            12233333 7889999999999999999999999999999999999999999999999999999999999886544443

Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane

>KOG1962|consensus

Probab=100.00  E-value=2.5e-32  Score=263.97  Aligned_cols=144  Identities=36%  Similarity=0.573  Sum_probs=123.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHcCCchhHHHHhhhhhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHhccCcccc-ccc
Q psy114            4 QWTLIATVLYFEMAFMLLLILPILSTQRLHKILKSKFVQGVKTQAGWYFGCILVILSLFFLDAIREMRKYASPEVK-EEA   82 (609)
Q Consensus         4 ~~~lv~~~L~~E~~~~~lL~lP~p~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lf~Ds~~~~~k~~~~~~~-~~~   82 (609)
                      ||++||++||+||+++++|+||+| +.||+++|+++...++..++..++.+++++++++|+|||+|+++|...+.. ...
T Consensus         1 ~~tlvf~iL~~Eial~~iL~Lpip-~r~~~~~~~~~~~~~~~~~~~~~i~~~~~villlfiDsvr~i~~~~~~~~~~~n~   79 (216)
T KOG1962|consen    1 YWTLVFTILYAEIALFLILLLPIP-PRRRRKIFKDRLKSGLAPQVLKTIATTMIVILLLFIDSVRRIQKYVSEYGSMANP   79 (216)
T ss_pred             CHHHHHHHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCC
Confidence            799999999999999999999995 666889999999999999999999999999999999999999999776422 223


Q ss_pred             CCCCCHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy114           83 HGHLDAEMQNNMKLFRAQRNFYISGFSLFLWLVIRQIIQLIAQQANLLAQNEASMNQARQAAVAAQA  149 (609)
Q Consensus        83 ~~~~~~~~~~~~~~f~aQRN~YisGf~LfL~lvi~r~~~li~~~~~l~~~~~a~~kqa~~a~~~a~~  149 (609)
                      ..++....|++|+.||+|||+|||||+||||+||+|++++|++++.++++ |.++|+++.+.+.+++
T Consensus        80 ~~~~~a~~~~~~~l~raqrn~YisGf~LFL~lvI~R~~~ll~~l~~l~~~-~~~~~~~~~lk~~~~~  145 (216)
T KOG1962|consen   80 TDQPLARTHLLEALFRAQRNLYISGFVLFLSLVIRRLHTLLRELATLRAN-EKAMKENEALKKQLEN  145 (216)
T ss_pred             ccchHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHhhhc
Confidence            35677888999999999999999999999999999999999999999997 5555555444444433

>COG5374 Uncharacterized conserved protein [Function unknown]

Probab=99.96  E-value=2.9e-29  Score=231.73  Aligned_cols=154  Identities=23%  Similarity=0.355  Sum_probs=129.0

Q ss_pred             CcchHHHHHHHHHHHHHHHHHHHcCCchhHHHH--hhh-hhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHhccCcc
Q psy114            1 MSLQWTLIATVLYFEMAFMLLLILPILSTQRLH--KIL-KSKFVQGVKTQAGWYFGCILVILSLFFLDAIREMRKYASPE   77 (609)
Q Consensus         1 Msl~~~lv~~~L~~E~~~~~lL~lP~p~~~r~~--~~~-~~~~~~~~~~~~~~~~~~v~~~l~~lf~Ds~~~~~k~~~~~   77 (609)
                      ||||+++||.+|.+||++|++|+||+|.++|+.  +.+ .++.    ..+...+++++++++++||+|||+|+++.+.+.
T Consensus         1 M~iy~~lvfslL~vEm~~f~il~LPlp~r~RR~l~~~~~~~~~----~~~~k~il~i~~~~IllLFiDS~~Rv~rv~~~~   76 (192)
T COG5374           1 MGIYYTLVFSLLVVEMVMFFILVLPLPKRLRRSLMKLYSTSKV----YRGFKHILKITFIFILLLFIDSWKRVYRVSKEA   76 (192)
T ss_pred             CccHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHhhhhh----hhhhHHHHHHHHHHHHHHHHHHhHHhhhhhhhh
Confidence            999999999999999999999999999988742  223 2333    344566778899999999999999998887553


Q ss_pred             cc-cccC-CCCCHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Q psy114           78 VK-EEAH-GHLDAEMQNNMKLFRAQRNFYISGFSLFLWLVIRQIIQLIAQQANLL-------AQNEASMNQARQAAVAAQ  148 (609)
Q Consensus        78 ~~-~~~~-~~~~~~~~~~~~~f~aQRN~YisGf~LfL~lvi~r~~~li~~~~~l~-------~~~~a~~kqa~~a~~~a~  148 (609)
                      .. .+.. ....++.++++|+||+||||||+||+|||++++.|++.++.++.+++       +.+||...++|.+.+-|+
T Consensus        77 nl~~a~~n~~~~~~i~~las~fy~qrnmyl~g~~L~l~~~v~~~~~~v~~ml~~~~~~~~k~D~~eA~~t~lk~~~~~~~  156 (192)
T COG5374          77 NLYSASINNYAVTRIAVLASRFYAQRNMYLSGSALFLSIVVMRVMSIVEEMLEENAKKGGKIDKMEADSTDLKARLRKAQ  156 (192)
T ss_pred             hhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhhcchHHHHHHHhhhh
Confidence            21 2222 23678889999999999999999999999999999999999999999       889999999999999898


Q ss_pred             HhhcCCCCcc
Q psy114          149 ALLDGPRGKW  158 (609)
Q Consensus       149 ~~~~~~~~~~  158 (609)
                      .++++.+++-
T Consensus       157 ~~le~Lqkn~  166 (192)
T COG5374         157 ILLEGLQKNQ  166 (192)
T ss_pred             HHHHHHHHHH
Confidence            8888776653

>KOG1962|consensus

Probab=99.67  E-value=3e-16  Score=152.44  Aligned_cols=109  Identities=27%  Similarity=0.434  Sum_probs=92.5

Q ss_pred             hhHHHhhhhhHHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhcCCCcchhhcccCHHHHHHHHHHHHHH
Q psy114          483 EIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKKDDKYQKGDSDEIKRLKEKLSKT  562 (609)
Q Consensus       483 ~I~~i~~~l~~li~qla~~~~~~ea~~kQa~sa~~~ak~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~e~~~lk~~l~~~  562 (609)
                      -+.-+.+|+.++|++|+.++++               +++|++++.+++.++..+.  .++++..++++.++|++|++++
T Consensus       108 FL~lvI~R~~~ll~~l~~l~~~---------------~~~~~~~~~lk~~~~~~~~--~~~~~~~~~~~~~kL~~el~~~  170 (216)
T KOG1962|consen  108 FLSLVIRRLHTLLRELATLRAN---------------EKAMKENEALKKQLENSSK--LEEENDKLKADLEKLETELEKK  170 (216)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhh---------------HHHHHHHHHHHHhhhcccc--hhhhHHHHHhhHHHHHHHHHHH
Confidence            3557789999999999999987               3455566666665554433  4577788899999999999999


Q ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCC
Q psy114          563 EEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQKVVTEQGDKK  608 (609)
Q Consensus       563 ~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~~~~~~kk  608 (609)
                      +++|++++++++||+||+|++++|||||+|||++||++++.+++|+
T Consensus       171 ~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~~~~~k~  216 (216)
T KOG1962|consen  171 QKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIESGGKKK  216 (216)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhccCCCC
Confidence            9999999999999999999999999999999999999999777664

>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8

Probab=98.97  E-value=1.9e-09  Score=105.75  Aligned_cols=80  Identities=35%  Similarity=0.474  Sum_probs=65.9

Q ss_pred             hHHHhhhhhHHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhcCCCcchhhcccCHHHHHHHHHHHHHHH
Q psy114          484 IKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKKDDKYQKGDSDEIKRLKEKLSKTE  563 (609)
Q Consensus       484 I~~i~~~l~~li~qla~~~~~~ea~~kQa~sa~~~ak~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~e~~~lk~~l~~~~  563 (609)
                      +.-+..|+.++|+++..+++..+++++|+++++++++++.+                  ++.+++.+|+++||+||++  
T Consensus       113 L~l~I~r~~~li~~l~~~~~~~~~~~kq~~~~~~~~~~~~~------------------~~~~~~~~ei~~lk~el~~--  172 (192)
T PF05529_consen  113 LSLVIRRVHSLIKELIKLEEKLEALKKQAESASEAAEKLLK------------------EENKKLSEEIEKLKKELEK--  172 (192)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhh------------------hhhhhhHHHHHHHHHHHHH--
Confidence            34567888999999999999999999999999999988721                  2234456677777777766  


Q ss_pred             HHHHHhhhhHHHHHHHHHHHHHHHH
Q psy114          564 EELKKEKTNSAALKNQADSVGKEYD  588 (609)
Q Consensus       564 ~~l~~~~~~~~~lkkQ~~~l~~eyd  588 (609)
                           +++|+++||||+|||++|||
T Consensus       173 -----~~~~~~~LkkQ~~~l~~eyd  192 (192)
T PF05529_consen  173 -----KEKEIEALKKQSEGLQKEYD  192 (192)
T ss_pred             -----HHHHHHHHHHHHHHHHhhcC
Confidence                 45699999999999999998

Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane

>PF01437 PSI: Plexin repeat; InterPro: IPR002165 This is a cysteine rich repeat found in several different extracellular receptors

Probab=97.82  E-value=5e-06  Score=63.65  Aligned_cols=37  Identities=38%  Similarity=1.129  Sum_probs=31.3

Q ss_pred             ccccCccccccccCCCC-CccCCCCCccccCCCCCCCCC
Q psy114          278 DCNTYSSCTQCVSSDFP-CDWCVDGHRCTHDTAENCRND  315 (609)
Q Consensus       278 dCs~~~~C~sCvsS~~p-C~WC~~~~~CT~~~~~~C~~~  315 (609)
                      +|+.|++|.+|++++|| |+||...++|+.. .++|...
T Consensus         1 ~C~~~~sC~~Cl~~~dp~CgWc~~~~~C~~~-~~~c~~~   38 (51)
T PF01437_consen    1 NCSQYTSCSSCLSSRDPYCGWCSSENRCVSG-SGQCPRS   38 (51)
T ss_dssp             -GGGGSSHHHHHHSTCTTEEEETTTTEEEEC-CGGSSST
T ss_pred             CCcCCCcHHHHHcCCCcCccccCCCCcccCC-cccCCcc
Confidence            58999999999999997 9999999999985 2367753

The function of the repeat is unknown. Three copies of the repeat are found in plexin (P70206 from SWISSPROT) []. Two copies of the repeat are found in mahogany protein. A related Caenorhabditis elegans protein (Q19981 from SWISSPROT) contains four copies of the repeat, while the Met receptor contains a single copy of the repeat.; GO: 0016020 membrane; PDB: 3NVQ_B 3NVN_B 3OL2_B 3OKT_A 3AL8_A 3OKW_A 3OKY_B 3AFC_B 1OLZ_B 1SHY_B ....

>smart00423 PSI domain found in Plexins, Semaphorins and Integrins

Probab=97.21  E-value=0.00016  Score=54.04  Aligned_cols=34  Identities=41%  Similarity=1.198  Sum_probs=29.3

Q ss_pred             cccCccccccccCCCC-CccCCCCCccccCCCCCCCC
Q psy114          279 CNTYSSCTQCVSSDFP-CDWCVDGHRCTHDTAENCRN  314 (609)
Q Consensus       279 Cs~~~~C~sCvsS~~p-C~WC~~~~~CT~~~~~~C~~  314 (609)
                      |+.+++|.+|+.++|| |+||+..++|++.  ..|..
T Consensus         1 C~~~~sC~~C~~~~~~~C~Wc~~~~~C~~~--~~c~~   35 (46)
T smart00423        1 CSKYTSCSECLLARDPYCAWCSSQGRCTSG--ERCDS   35 (46)
T ss_pred             CCCCCcHHHHHcCCCCCCCccCCCCcccCc--cccCc
Confidence            6778899999999999 9999999999983  45753

>KOG3610|consensus

Probab=97.06  E-value=0.00017  Score=85.10  Aligned_cols=56  Identities=29%  Similarity=0.593  Sum_probs=47.4

Q ss_pred             eeeeeccccCcccCccccCCCCcccccCCCCCccccccCCC---CCCCCCChhhHHHhhhh
Q psy114          434 VNIYKCRDLANNCGLCLALPEKYGCGWCESSKRCEIFEQCD---KGLEGDSDEIKRLKEKL  491 (609)
Q Consensus       434 v~LYnCs~~~~dCs~Cl~a~~~y~C~WC~~~~~C~~~~~C~---~~~~~~~~~I~~i~~~l  491 (609)
                      |.||+|..++.+|+.|+++++.|.|+||..++  ..++.|+   ++..|++|.|+.+.+--
T Consensus         1 v~ly~c~~~~~~c~~cl~~~p~~~C~wc~~~~--~~~~~C~~~~v~~~c~~P~i~~~~P~~   59 (1025)
T KOG3610|consen    1 VELYSCLRLAKDCALCLPASPVLLCGWCIRGS--KEAHACSEMNVNCVCPLPSITALSPLN   59 (1025)
T ss_pred             CeeeeccccccchhhhhccCccceeEEEeCCc--hhhhhcccccCceecCCCcccceeecc
Confidence            47999999999999999999999999998875  6667785   67788999988776543

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=96.23  E-value=0.086  Score=51.06  Aligned_cols=114  Identities=16%  Similarity=0.226  Sum_probs=58.0

Q ss_pred             hhHHHhhhhhHHHHHHHHhhhhHHHHHHHhhhhHHHHH---HHHHHHHHHHHHhhhcCCCcchhhcccCHHHHHHHHHHH
Q psy114          483 EIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYD---RLLKEHEKVQKVVTEQGDKKDDKYQKGDSDEIKRLKEKL  559 (609)
Q Consensus       483 ~I~~i~~~l~~li~qla~~~~~~ea~~kQa~sa~~~ak---~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~e~~~lk~~l  559 (609)
                      ...++++.+.++--.-|.+....+++++|+.|++.+-.   -+=+|.++++..+..     .+++..+|.++...+++|-
T Consensus        23 en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~~aK~l~eEledLk~~~~~-----lEE~~~~L~aq~rqlEkE~   97 (193)
T PF14662_consen   23 ENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQALQKAKALEEELEDLKTLAKS-----LEEENRSLLAQARQLEKEQ   97 (193)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH
Confidence            34566666666666667777778888888888776643   336667777665422     2233333333333333333


Q ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy114          560 SKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQKVV  601 (609)
Q Consensus       560 ~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~  601 (609)
                      .....++.+-+.+-..+....+++.+.|..|..+...||.|+
T Consensus        98 q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql  139 (193)
T PF14662_consen   98 QSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQL  139 (193)
T ss_pred             HHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHH
Confidence            333333333223333333334444444444444555555544

>PF01437 PSI: Plexin repeat; InterPro: IPR002165 This is a cysteine rich repeat found in several different extracellular receptors

Probab=95.43  E-value=0.0043  Score=47.37  Aligned_cols=35  Identities=37%  Similarity=0.970  Sum_probs=28.5

Q ss_pred             eccccCcccCccccCCCCcccccCCCCCcccccc-CCC
Q psy114          438 KCRDLANNCGLCLALPEKYGCGWCESSKRCEIFE-QCD  474 (609)
Q Consensus       438 nCs~~~~dCs~Cl~a~~~y~C~WC~~~~~C~~~~-~C~  474 (609)
                      +|+. +.+|+.|++++.. .|+||...++|+... .|.
T Consensus         1 ~C~~-~~sC~~Cl~~~dp-~CgWc~~~~~C~~~~~~c~   36 (51)
T PF01437_consen    1 NCSQ-YTSCSSCLSSRDP-YCGWCSSENRCVSGSGQCP   36 (51)
T ss_dssp             -GGG-GSSHHHHHHSTCT-TEEEETTTTEEEECCGGSS
T ss_pred             CCcC-CCcHHHHHcCCCc-CccccCCCCcccCCcccCC
Confidence            4764 5899999977644 899999999999987 786

The function of the repeat is unknown. Three copies of the repeat are found in plexin (P70206 from SWISSPROT) []. Two copies of the repeat are found in mahogany protein. A related Caenorhabditis elegans protein (Q19981 from SWISSPROT) contains four copies of the repeat, while the Met receptor contains a single copy of the repeat.; GO: 0016020 membrane; PDB: 3NVQ_B 3NVN_B 3OL2_B 3OKT_A 3AL8_A 3OKW_A 3OKY_B 3AFC_B 1OLZ_B 1SHY_B ....

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=95.36  E-value=0.14  Score=49.64  Aligned_cols=105  Identities=18%  Similarity=0.208  Sum_probs=50.9

Q ss_pred             hHHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhcCCCcchhhcccCHHHHHHHHHHHHHHHHHHHHhhh
Q psy114          492 SKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKKDDKYQKGDSDEIKRLKEKLSKTEEELKKEKT  571 (609)
Q Consensus       492 ~~li~qla~~~~~~ea~~kQa~sa~~~ak~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~e~~~lk~~l~~~~~~l~~~~~  571 (609)
                      ..|=..-..+...+..++...+.+.++..++.++...|+..+...  ...-...+.+.+|++.||..++...+.-.+.-+
T Consensus        11 ~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~--Qqal~~aK~l~eEledLk~~~~~lEE~~~~L~a   88 (193)
T PF14662_consen   11 EDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSL--QQALQKAKALEEELEDLKTLAKSLEEENRSLLA   88 (193)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333334444556666666777777777777777777765544221  011123344555555555555555443333333


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy114          572 NSAALKNQADSVGKEYDRLLKEHEKVQ  598 (609)
Q Consensus       572 ~~~~lkkQ~~~l~~eydrl~~e~~~l~  598 (609)
                      ...-+.+....|..+..-|-+|+.+++
T Consensus        89 q~rqlEkE~q~L~~~i~~Lqeen~kl~  115 (193)
T PF14662_consen   89 QARQLEKEQQSLVAEIETLQEENGKLL  115 (193)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence            333333333333333444444444333

>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []

Probab=95.32  E-value=0.034  Score=41.34  Aligned_cols=34  Identities=41%  Similarity=0.488  Sum_probs=31.3

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy114          569 EKTNSAALKNQADSVGKEYDRLLKEHEKVQKVVT  602 (609)
Q Consensus       569 ~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~~  602 (609)
                      -|.|.++||.+-+.|..+||+|..|+++|+.++.
T Consensus         3 lE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~   36 (45)
T PF02183_consen    3 LERDYDALKASYDSLKAEYDSLKKENEKLRAEVQ   36 (45)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3569999999999999999999999999998876

; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking

Probab=95.26  E-value=0.16  Score=52.88  Aligned_cols=58  Identities=12%  Similarity=0.239  Sum_probs=30.0

Q ss_pred             cccCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy114          545 QKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQKVVT  602 (609)
Q Consensus       545 ~~~~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~~  602 (609)
                      ++..++++++++.+++.....+.+.....+...++.+.+..+.++..+++..++.++.
T Consensus        86 i~~~r~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~  143 (302)
T PF10186_consen   86 IEQKRERLEELRESLEQRRSRLSASQDLVESRQEQLEELQNELEERKQRLSQLQSQLA  143 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444555555555555444433333445555666666666666666555555443

In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=95.14  E-value=0.44  Score=50.74  Aligned_cols=110  Identities=19%  Similarity=0.264  Sum_probs=49.1

Q ss_pred             hhhhHHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhcCCCcchhhcccCHHHHHHHHHHHHHHHHHHHH
Q psy114          489 EKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKKDDKYQKGDSDEIKRLKEKLSKTEEELKK  568 (609)
Q Consensus       489 ~~l~~li~qla~~~~~~ea~~kQa~sa~~~ak~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~e~~~lk~~l~~~~~~l~~  568 (609)
                      .++..|....+.+.+..+.+......+.+....++++-..++....+. ...+.++.+.+++++.+++.+++.+++++..
T Consensus       156 ~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~-~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~e  234 (325)
T PF08317_consen  156 ENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEEI-ESCDQEELEALRQELAEQKEEIEAKKKELAE  234 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333334444444444444444444444444444444444444433221 1112344444555555555555544444444


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy114          569 EKTNSAALKNQADSVGKEYDRLLKEHEKVQK  599 (609)
Q Consensus       569 ~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~  599 (609)
                      .+.+++.++...+.+..+=..+.++.++++.
T Consensus       235 l~~el~~l~~~i~~~~~~k~~l~~eI~e~~~  265 (325)
T PF08317_consen  235 LQEELEELEEKIEELEEQKQELLAEIAEAEK  265 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444444444444444444444444443

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=94.32  E-value=0.95  Score=48.17  Aligned_cols=111  Identities=16%  Similarity=0.319  Sum_probs=89.2

Q ss_pred             hHHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhcCCCcchhhcccCHHHHHHHHHHHHHHHHHHHHhhh
Q psy114          492 SKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKKDDKYQKGDSDEIKRLKEKLSKTEEELKKEKT  571 (609)
Q Consensus       492 ~~li~qla~~~~~~ea~~kQa~sa~~~ak~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~e~~~lk~~l~~~~~~l~~~~~  571 (609)
                      ..|...+..+..+.+.+.++.+-+++...++.+..+.|+..+..-.... .+-......++++++.+|++.+.++...++
T Consensus       152 ~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~-~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~  230 (325)
T PF08317_consen  152 EGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLV-EEIESCDQEELEALRQELAEQKEEIEAKKK  230 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhhcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5566777788888888888888888888888888888877654422111 123456788999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy114          572 NSAALKNQADSVGKEYDRLLKEHEKVQKVVTE  603 (609)
Q Consensus       572 ~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~~~  603 (609)
                      +++.+++|-+.+..+-+.+.++.++++.+++.
T Consensus       231 ~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e  262 (325)
T PF08317_consen  231 ELAELQEELEELEEKIEELEEQKQELLAEIAE  262 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999888764

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)

Probab=94.03  E-value=1.5  Score=40.37  Aligned_cols=58  Identities=14%  Similarity=0.266  Sum_probs=39.3

Q ss_pred             cccCHHHHHHHHHHHHHHHHHHHHh----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy114          545 QKGDSDEIKRLKEKLSKTEEELKKE----KTNSAALKNQADSVGKEYDRLLKEHEKVQKVVT  602 (609)
Q Consensus       545 ~~~~~~e~~~lk~~l~~~~~~l~~~----~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~~  602 (609)
                      ...+..++..|+.+......+|..+    +.....|+++.+.+.+.+|.|.+.|.=|.+|++
T Consensus        68 ~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE  129 (132)
T PF07926_consen   68 LQELQQEINELKAEAESAKAELEESEASWEEQKEQLEKELSELEQRIEDLNEQNKLLHDQLE  129 (132)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3444455555555555555555444    334557888888899999999888888888876

These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore

>smart00423 PSI domain found in Plexins, Semaphorins and Integrins

Probab=93.98  E-value=0.03  Score=41.68  Aligned_cols=30  Identities=40%  Similarity=1.004  Sum_probs=24.5

Q ss_pred             cccCccccCCCCcccccCCCCCccccccCCC
Q psy114          444 NNCGLCLALPEKYGCGWCESSKRCEIFEQCD  474 (609)
Q Consensus       444 ~dCs~Cl~a~~~y~C~WC~~~~~C~~~~~C~  474 (609)
                      .+|+.|+.+... .|+||..++.|+....|.
T Consensus         5 ~sC~~C~~~~~~-~C~Wc~~~~~C~~~~~c~   34 (46)
T smart00423        5 TSCSECLLARDP-YCAWCSSQGRCTSGERCD   34 (46)
T ss_pred             CcHHHHHcCCCC-CCCccCCCCcccCccccC
Confidence            589999766554 699999888999987774

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=93.47  E-value=1.2  Score=44.14  Aligned_cols=108  Identities=13%  Similarity=0.220  Sum_probs=45.8

Q ss_pred             HHhhhhhHHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhcCCCcchhhcccCHHHHHHHHHHHHHHHHH
Q psy114          486 RLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKKDDKYQKGDSDEIKRLKEKLSKTEEE  565 (609)
Q Consensus       486 ~i~~~l~~li~qla~~~~~~ea~~kQa~sa~~~ak~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~e~~~lk~~l~~~~~~  565 (609)
                      .|...-+.||..|+   ...+.++++.+...+.......||..+...+.....  +.++........++-|..|+.....
T Consensus        20 dIT~~NL~lIksLK---eei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~--e~~eL~k~L~~y~kdK~~L~~~k~r   94 (201)
T PF13851_consen   20 DITLNNLELIKSLK---EEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEE--EVEELRKQLKNYEKDKQSLQNLKAR   94 (201)
T ss_pred             HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444554443   333445555555555555555566555554432110  0111111112222333333333333


Q ss_pred             HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy114          566 LKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQ  598 (609)
Q Consensus       566 l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~  598 (609)
                      ++..+.++..|+.+.+.|...|+.+-.|...|.
T Consensus        95 l~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~  127 (201)
T PF13851_consen   95 LKELEKELKDLKWEHEVLEQRFEKLEQERDELY  127 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444444444444444444444444444444

>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family

Probab=93.37  E-value=0.42  Score=52.51  Aligned_cols=28  Identities=14%  Similarity=0.261  Sum_probs=14.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy114          575 ALKNQADSVGKEYDRLLKEHEKVQKVVT  602 (609)
Q Consensus       575 ~lkkQ~~~l~~eydrl~~e~~~l~~~~~  602 (609)
                      .+.+|.+.|..|-.++....+.|+.+++
T Consensus       113 ~~~~~~~ql~~~~~~~~~~l~~l~~~l~  140 (472)
T TIGR03752       113 ELTKEIEQLKSERQQLQGLIDQLQRRLA  140 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3444445555555555555555665553

Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=93.25  E-value=0.29  Score=48.15  Aligned_cols=112  Identities=21%  Similarity=0.262  Sum_probs=41.5

Q ss_pred             hhHHHhhhhhHHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhcCCCcchhhcccCHHHHHHHHHHHHHH
Q psy114          483 EIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKKDDKYQKGDSDEIKRLKEKLSKT  562 (609)
Q Consensus       483 ~I~~i~~~l~~li~qla~~~~~~ea~~kQa~sa~~~ak~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~e~~~lk~~l~~~  562 (609)
                      .+......+.+|..+|+.+....+.+..|.-.++..-.++-.+.......+     .....+...+..++..|+.+++++
T Consensus        68 ~~~~le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l-----~~l~~~~~~L~~~~~~l~~~l~ek  142 (194)
T PF08614_consen   68 QISSLEQKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRL-----AELEAELAQLEEKIKDLEEELKEK  142 (194)
T ss_dssp             ----------------------------------------------HHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccchhhhhHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455666677777777777777777776666555555444433322222221     112344555666666777777777


Q ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy114          563 EEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQK  599 (609)
Q Consensus       563 ~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~  599 (609)
                      .+.+.....|+.+|.-|...+....++|-+||.+|=.
T Consensus       143 ~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~  179 (194)
T PF08614_consen  143 NKANEILQDELQALQLQLNMLEEKLRKLEEENRELVE  179 (194)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7766666777777777777777777777777777643

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>PRK09039 hypothetical protein; Validated

Probab=93.12  E-value=0.89  Score=48.77  Aligned_cols=51  Identities=14%  Similarity=0.217  Sum_probs=36.2

Q ss_pred             hhcccCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy114          543 KYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKE  593 (609)
Q Consensus       543 ~~~~~~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e  593 (609)
                      .+...|+.+|+.|++++...+.+|..+|......+.|.+.|..+-+..+.+
T Consensus       137 ~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~  187 (343)
T PRK09039        137 AQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVALAQ  187 (343)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445667777777777777777777777776677777777777777776643

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=93.03  E-value=2.9  Score=38.95  Aligned_cols=78  Identities=21%  Similarity=0.274  Sum_probs=51.7

Q ss_pred             HHhhhhhHHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhcCCCcchhhcccCHHHHHHHHHHHHHHHHH
Q psy114          486 RLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKKDDKYQKGDSDEIKRLKEKLSKTEEE  565 (609)
Q Consensus       486 ~i~~~l~~li~qla~~~~~~ea~~kQa~sa~~~ak~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~e~~~lk~~l~~~~~~  565 (609)
                      .+..++.+|=++|.....+.+.+.++|+++.+....+-++-..+...+.     ....+...++.|.+.|.+++.++...
T Consensus        21 sle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~-----~L~~EL~~l~sEk~~L~k~lq~~q~k   95 (140)
T PF10473_consen   21 SLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELN-----QLELELDTLRSEKENLDKELQKKQEK   95 (140)
T ss_pred             hHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5677888888999999999999999999998888887666665544432     12234444455555555555555444


Q ss_pred             HHH
Q psy114          566 LKK  568 (609)
Q Consensus       566 l~~  568 (609)
                      +..
T Consensus        96 v~e   98 (140)
T PF10473_consen   96 VSE   98 (140)
T ss_pred             HHH
Confidence            333

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion

Probab=92.94  E-value=1.8  Score=42.18  Aligned_cols=108  Identities=16%  Similarity=0.354  Sum_probs=56.9

Q ss_pred             HhhhhhHHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhcCCCcchhhcccCHHHHHHHHHHHHHHHHHH
Q psy114          487 LKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKKDDKYQKGDSDEIKRLKEKLSKTEEEL  566 (609)
Q Consensus       487 i~~~l~~li~qla~~~~~~ea~~kQa~sa~~~ak~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~e~~~lk~~l~~~~~~l  566 (609)
                      .+..+.....++..+....+.+.+............-++........     +...+....+....+++.+++.+..+++
T Consensus        79 ~~~e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~-----~~~~~~l~~l~~~~~~~~~e~~~l~~~~  153 (191)
T PF04156_consen   79 LQGELSELQQQLQQLQEELDQLQERIQELESELEKLKEDLQELRELL-----KSVEERLDSLDESIKELEKEIRELQKEL  153 (191)
T ss_pred             hhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444455555555555555444444444333332222221110     1112334455555666666666666566


Q ss_pred             HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy114          567 KKEKTNSAALKNQADSVGKEYDRLLKEHEKVQK  599 (609)
Q Consensus       567 ~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~  599 (609)
                      +..+.+++.++.+.+.+..+|+++.+..++++.
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  186 (191)
T PF04156_consen  154 QDSREEVQELRSQLERLQENLQQLEEKIQELQE  186 (191)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666677777777777777777777666665554

The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=92.85  E-value=1.4  Score=51.50  Aligned_cols=54  Identities=19%  Similarity=0.364  Sum_probs=34.8

Q ss_pred             cccCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy114          545 QKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQ  598 (609)
Q Consensus       545 ~~~~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~  598 (609)
                      ...+..|+++|..||+.+++++...|.|+..|+++...-.+|-+-|+...+.+|
T Consensus       547 ~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amq  600 (697)
T PF09726_consen  547 RRQLESELKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMSALSAMQ  600 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence            456667788888888888888888888887777761113344454444444443

; GO: 0016021 integral to membrane

>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

Probab=92.76  E-value=1.5  Score=46.60  Aligned_cols=52  Identities=17%  Similarity=0.321  Sum_probs=35.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy114          549 SDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQKV  600 (609)
Q Consensus       549 ~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~  600 (609)
                      ..|-+....++.+..+++.|+..|+.-+.||+.+|..+..-|.+++.+|..+
T Consensus       115 r~e~~~v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq  166 (499)
T COG4372         115 RQEREAVRQELAAARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQ  166 (499)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455555666777777777777777777777777777776666666665444

>smart00787 Spc7 Spc7 kinetochore protein

Probab=92.59  E-value=1.6  Score=46.19  Aligned_cols=109  Identities=16%  Similarity=0.247  Sum_probs=60.1

Q ss_pred             hHHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhcCCCcchhhcccCHHHHHHHHHHHHHHHHHHHHhhh
Q psy114          492 SKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKKDDKYQKGDSDEIKRLKEKLSKTEEELKKEKT  571 (609)
Q Consensus       492 ~~li~qla~~~~~~ea~~kQa~sa~~~ak~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~e~~~lk~~l~~~~~~l~~~~~  571 (609)
                      ..|...+..+..+.+.+.++.+-+++..-.+.+..+.|+..+..-..-.+ +-+.-...++.++|++|++...++....+
T Consensus       147 ~~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~-e~~~~d~~eL~~lk~~l~~~~~ei~~~~~  225 (312)
T smart00787      147 EGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLED-ELEDCDPTELDRAKEKLKKLLQEIMIKVK  225 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-HHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44556777788888889999998888888888888887765443211110 10122234444444444444444444444


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy114          572 NSAALKNQADSVGKEYDRLLKEHEKVQKVV  601 (609)
Q Consensus       572 ~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~  601 (609)
                      +++.++.|.+.+...-....++.++++.++
T Consensus       226 ~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I  255 (312)
T smart00787      226 KLEELEEELQELESKIEDLTNKKSELNTEI  255 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444444444444444444444444433

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>PRK09039 hypothetical protein; Validated

Probab=92.53  E-value=2.2  Score=45.75  Aligned_cols=42  Identities=10%  Similarity=0.144  Sum_probs=18.0

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy114          552 IKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKE  593 (609)
Q Consensus       552 ~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e  593 (609)
                      |..|+.|++.+++.+...+..+++.+.|-......++.|..+
T Consensus       139 V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~  180 (343)
T PRK09039        139 VELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRR  180 (343)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444444444444444444444444444444444444333

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=92.26  E-value=2.2  Score=48.04  Aligned_cols=91  Identities=13%  Similarity=0.219  Sum_probs=45.8

Q ss_pred             hhhhhHHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhcCCCcchhhcccCHHHHHHHHHHHHHHHHHHH
Q psy114          488 KEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKKDDKYQKGDSDEIKRLKEKLSKTEEELK  567 (609)
Q Consensus       488 ~~~l~~li~qla~~~~~~ea~~kQa~sa~~~ak~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~e~~~lk~~l~~~~~~l~  567 (609)
                      ......|......+....+.++++.+.+..+-....++.+.|+...++     .....+.+..|.+.|+.++++..+.+.
T Consensus       149 qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~ke-----l~~~~e~l~~E~~~L~~q~~e~~~ri~  223 (546)
T PF07888_consen  149 QKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKE-----LTESSEELKEERESLKEQLAEARQRIR  223 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444445555555555555555555555555555555555443211     112233445555555555555555555


Q ss_pred             HhhhhHHHHHHHHHHH
Q psy114          568 KEKTNSAALKNQADSV  583 (609)
Q Consensus       568 ~~~~~~~~lkkQ~~~l  583 (609)
                      ..+.|+.+|+.+....
T Consensus       224 ~LEedi~~l~qk~~E~  239 (546)
T PF07888_consen  224 ELEEDIKTLTQKEKEQ  239 (546)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            5555666665555333

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=92.12  E-value=2.1  Score=43.40  Aligned_cols=33  Identities=24%  Similarity=0.360  Sum_probs=20.7

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy114          570 KTNSAALKNQADSVGKEYDRLLKEHEKVQKVVT  602 (609)
Q Consensus       570 ~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~~  602 (609)
                      +.++..+|++...|..|-.+|.++..+|++++.
T Consensus        95 ~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~  127 (239)
T COG1579          95 NIEIQIAKERINSLEDELAELMEEIEKLEKEIE  127 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445666666666666666666666666665543

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=91.85  E-value=3.9  Score=37.06  Aligned_cols=52  Identities=25%  Similarity=0.431  Sum_probs=42.9

Q ss_pred             ChhhHHHhhhhhHHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q psy114          481 SDEIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKV  532 (609)
Q Consensus       481 ~~~I~~i~~~l~~li~qla~~~~~~ea~~kQa~sa~~~ak~~~~e~~~l~~~  532 (609)
                      ...+..++..|.-+=++++.++...+++.++=+.+++.-=+++.+++.++..
T Consensus        15 ~~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~   66 (120)
T PF12325_consen   15 VQLVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRAL   66 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3366788888888888899999999999999999999999999888776444

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=91.71  E-value=0.35  Score=51.17  Aligned_cols=47  Identities=17%  Similarity=0.319  Sum_probs=23.0

Q ss_pred             hcccCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q psy114          544 YQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRL  590 (609)
Q Consensus       544 ~~~~~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl  590 (609)
                      |++.+.+|+++|++|.++.++++++.+.+.+.++.+-+..-++|+.+
T Consensus        58 Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~  104 (314)
T PF04111_consen   58 EEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNEL  104 (314)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444555555555555555555555555555544444444444433

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=91.54  E-value=5.3  Score=39.56  Aligned_cols=99  Identities=23%  Similarity=0.353  Sum_probs=67.4

Q ss_pred             hhhHHHHHHHHhhhhHHHHHHHhhhhHHHHHHHH-------HHHHHHHHHhhhcCCCcchhhcccCHHHHHHHHHHHHHH
Q psy114          490 KLSKTEEELKKEKTNSAALKSQADSVGKEYDRLL-------KEHEKVQKVVTEQGDKKDDKYQKGDSDEIKRLKEKLSKT  562 (609)
Q Consensus       490 ~l~~li~qla~~~~~~ea~~kQa~sa~~~ak~~~-------~e~~~l~~~~~~~~~~~~~~~~~~~~~e~~~lk~~l~~~  562 (609)
                      -|.+|-.+.+.+++..+...+........-+++.       ++.+.|++.+..         -.+++..+..+|..++..
T Consensus        28 lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~---------y~kdK~~L~~~k~rl~~~   98 (201)
T PF13851_consen   28 LIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKN---------YEKDKQSLQNLKARLKEL   98 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHH
Confidence            3455666666666666666666666666655554       444445444422         234456677778888888


Q ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy114          563 EEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKV  597 (609)
Q Consensus       563 ~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l  597 (609)
                      +++++..+-+-+.|.-+.+.+.+|.|.|.+.....
T Consensus        99 ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~  133 (201)
T PF13851_consen   99 EKELKDLKWEHEVLEQRFEKLEQERDELYRKFESA  133 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888888888888888888888888887666554

>KOG0971|consensus

Probab=91.31  E-value=3  Score=48.88  Aligned_cols=45  Identities=20%  Similarity=0.336  Sum_probs=37.9

Q ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy114          558 KLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQKVVT  602 (609)
Q Consensus       558 ~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~~  602 (609)
                      ...++.|++++...|++.|+.|.|.|+++.|.+-.....||.|++
T Consensus       397 d~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVD  441 (1243)
T KOG0971|consen  397 DHQKLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVD  441 (1243)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334555677778889999999999999999999888888998877

>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length

Probab=91.29  E-value=0.84  Score=43.28  Aligned_cols=50  Identities=22%  Similarity=0.314  Sum_probs=39.9

Q ss_pred             cCHHHHHHHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy114          547 GDSDEIKRLKEKLSKTEEELKKEK---TNSAALKNQADSVGKEYDRLLKEHEK  596 (609)
Q Consensus       547 ~~~~e~~~lk~~l~~~~~~l~~~~---~~~~~lkkQ~~~l~~eydrl~~e~~~  596 (609)
                      ...++.+.|+.+|++.++.++.-+   .|.+.|++|.+.|..+|+...++|+.
T Consensus        24 ~~~~e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~~~~~~~e~   76 (155)
T PF06810_consen   24 KVKEERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNKTAKEEYEA   76 (155)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            346678888888888888766644   59999999999999999977666665

The function of this family is unknown.; GO: 0005198 structural molecule activity

>KOG0996|consensus

Probab=91.27  E-value=0.96  Score=54.31  Aligned_cols=60  Identities=13%  Similarity=0.239  Sum_probs=40.0

Q ss_pred             hhcccCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy114          543 KYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQKVVT  602 (609)
Q Consensus       543 ~~~~~~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~~  602 (609)
                      .+.+++.+++++|+.++++..-+++++..++.-..+-...+.++++.+.+|...|...+.
T Consensus       907 ~kv~~~~~~~~~l~~~i~k~~~~i~~s~~~i~k~q~~l~~le~~~~~~e~e~~~L~e~~~  966 (1293)
T KOG0996|consen  907 DKVEKINEQLDKLEADIAKLTVAIKTSDRNIAKAQKKLSELEREIEDTEKELDDLTEELK  966 (1293)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            334555556666666666666666666777777777777777777777777766665544

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch

Probab=91.19  E-value=5.5  Score=37.31  Aligned_cols=113  Identities=19%  Similarity=0.307  Sum_probs=50.1

Q ss_pred             hHHHhhhhhHHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhcCCCcchhhcccCHHHHHHHHHHHHHHH
Q psy114          484 IKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKKDDKYQKGDSDEIKRLKEKLSKTE  563 (609)
Q Consensus       484 I~~i~~~l~~li~qla~~~~~~ea~~kQa~sa~~~ak~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~e~~~lk~~l~~~~  563 (609)
                      +..+..-|-.||.+...-+...|.+..+.......-.++-...+.|+..++..     +.+......+...|+++++...
T Consensus        33 ~~~vin~i~~Ll~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~-----ere~~~~~~~~~~l~~~~~~~~  107 (151)
T PF11559_consen   33 DVRVINCIYDLLQQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEEL-----ERELASAEEKERQLQKQLKSLE  107 (151)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH
Confidence            44455555555666666666666665555544444444444444444433221     1112222333333444444444


Q ss_pred             HHHHHhhhhHHHHHHHHHHHHHHHH----HHHHHHHHHHhhh
Q psy114          564 EELKKEKTNSAALKNQADSVGKEYD----RLLKEHEKVQKVV  601 (609)
Q Consensus       564 ~~l~~~~~~~~~lkkQ~~~l~~eyd----rl~~e~~~l~~~~  601 (609)
                      ..++....|+.-+|....+...-|.    |---|+++|++++
T Consensus       108 ~~~k~~kee~~klk~~~~~~~tq~~~e~rkke~E~~kLk~rL  149 (151)
T PF11559_consen  108 AKLKQEKEELQKLKNQLQQRKTQYEHELRKKEREIEKLKERL  149 (151)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4444444444444444444333332    2233445555544

pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.

>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility

Probab=91.16  E-value=3.2  Score=40.67  Aligned_cols=103  Identities=10%  Similarity=0.129  Sum_probs=50.6

Q ss_pred             ChhhHHHhhhhhHHHHHHHHhhhhHHHHHHHhhhhHH-HHHHHHHHHHHHHHHhhhcCCCcchhhcccCHHHHHHHHHHH
Q psy114          481 SDEIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGK-EYDRLLKEHEKVQKVVTEQGDKKDDKYQKGDSDEIKRLKEKL  559 (609)
Q Consensus       481 ~~~I~~i~~~l~~li~qla~~~~~~ea~~kQa~sa~~-~ak~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~e~~~lk~~l  559 (609)
                      .--+-.+..++..          ..+|.+++.+|... +.++.++.. ..+..        ...+++.+..+.+.|+.++
T Consensus        83 GlLL~rvrde~~~----------~l~~y~~l~~s~~~f~~rk~l~~e-~~~~~--------l~~~i~~L~~e~~~L~~~~  143 (189)
T PF10211_consen   83 GLLLLRVRDEYRM----------TLDAYQTLYESSIAFGMRKALQAE-QGKQE--------LEEEIEELEEEKEELEKQV  143 (189)
T ss_pred             hHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHH-HHHHH--------HHHHHHHHHHHHHHHHHHH
Confidence            4445556666553          34455555555444 334444332 11111        1233444555555555555


Q ss_pred             HHHHHHHHHhhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy114          560 SKTEEELKKEKTNSA-ALKNQADSVGKEYDRLLKEHEKVQKVVT  602 (609)
Q Consensus       560 ~~~~~~l~~~~~~~~-~lkkQ~~~l~~eydrl~~e~~~l~~~~~  602 (609)
                      .+........++..+ .+....+....|+|-|...+++|..+++
T Consensus       144 ~~l~~~~e~~ek~~~e~~~~~~k~~~~ei~~lk~~~~ql~~~l~  187 (189)
T PF10211_consen  144 QELKNKCEQLEKREEELRQEEEKKHQEEIDFLKKQNQQLKAQLE  187 (189)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            544443333332222 2333344566777777777777777664

Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues

Probab=90.65  E-value=4.2  Score=42.66  Aligned_cols=107  Identities=22%  Similarity=0.351  Sum_probs=67.2

Q ss_pred             ChhhHHHhhhhhHHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhcCCCcchhhcccCHHHHHHHHHHHH
Q psy114          481 SDEIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKKDDKYQKGDSDEIKRLKEKLS  560 (609)
Q Consensus       481 ~~~I~~i~~~l~~li~qla~~~~~~ea~~kQa~sa~~~ak~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~e~~~lk~~l~  560 (609)
                      .+++..+++++..|-.+...++.-..-+++.+....+....+|.+--               ++......++..|..||+
T Consensus       159 ~~~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv---------------~QL~~An~qia~LseELa  223 (306)
T PF04849_consen  159 CIQLEALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCV---------------KQLSEANQQIASLSEELA  223 (306)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHH---------------HHhhhcchhHHHHHHHHH
Confidence            45788999999888777777777777777666666666666664431               112223445555666666


Q ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy114          561 KTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQKVVT  602 (609)
Q Consensus       561 ~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~~  602 (609)
                      .+.++....+.++..|..|.-.|.+..-.+.-|+.+|+..+.
T Consensus       224 ~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~  265 (306)
T PF04849_consen  224 RKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQ  265 (306)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            666666666666666666666666666666666666655544

HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=90.64  E-value=2.5  Score=47.64  Aligned_cols=50  Identities=24%  Similarity=0.440  Sum_probs=38.4

Q ss_pred             HHHhhhhhHHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHhh
Q psy114          485 KRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVT  534 (609)
Q Consensus       485 ~~i~~~l~~li~qla~~~~~~ea~~kQa~sa~~~ak~~~~e~~~l~~~~~  534 (609)
                      ..++.++..|-.+|+.....++.++.+.+........+-++++.|+...+
T Consensus       167 ~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~  216 (546)
T PF07888_consen  167 EQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLA  216 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56677777788888888888888888888888887777777777766443

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif

Probab=90.62  E-value=4.2  Score=35.64  Aligned_cols=69  Identities=26%  Similarity=0.411  Sum_probs=51.0

Q ss_pred             HHHHHHHHHHHHHHHhhhcCCCcchhhcccCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy114          518 EYDRLLKEHEKVQKVVTEQGDKKDDKYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKV  597 (609)
Q Consensus       518 ~ak~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l  597 (609)
                      ++-|+-..+..||+++-+            ......+|+.+|+.++.+|.+.+.|++.|.=.-+.|.+....|.+|....
T Consensus         6 eYsKLraQ~~vLKKaVie------------EQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~~~   73 (102)
T PF10205_consen    6 EYSKLRAQNQVLKKAVIE------------EQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELEES   73 (102)
T ss_pred             HHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            445555566666666421            14556789999999999999999999988888888888888887777654


Q ss_pred             H
Q psy114          598 Q  598 (609)
Q Consensus       598 ~  598 (609)
                      .
T Consensus        74 ~   74 (102)
T PF10205_consen   74 E   74 (102)
T ss_pred             h
Confidence            3

This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.

>PRK11637 AmiB activator; Provisional

Probab=90.62  E-value=2.7  Score=46.46  Aligned_cols=46  Identities=13%  Similarity=0.188  Sum_probs=19.2

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy114          548 DSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKE  593 (609)
Q Consensus       548 ~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e  593 (609)
                      +..+++++..++.+.++++.+.+.+++.++++.+.+.++++.+.++
T Consensus        80 l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~  125 (428)
T PRK11637         80 QEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERL  125 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444444444444444444444444444444444444443333

>COG5374 Uncharacterized conserved protein [Function unknown]

Probab=90.55  E-value=0.5  Score=45.19  Aligned_cols=42  Identities=14%  Similarity=0.236  Sum_probs=25.6

Q ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy114          557 EKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQKVVT  602 (609)
Q Consensus       557 ~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~~  602 (609)
                      .+..+.++++.++..+++.|+|+-+.+-|+||..    +++.++.+
T Consensus       143 A~~t~lk~~~~~~~~~le~Lqkn~~~~~k~~d~~----ne~~~~v~  184 (192)
T COG5374         143 ADSTDLKARLRKAQILLEGLQKNQEELFKLLDKY----NELREQVQ  184 (192)
T ss_pred             cchHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH----hHHHHHHH
Confidence            3333344444556668999999887777777655    44444444

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=90.53  E-value=7.8  Score=39.33  Aligned_cols=48  Identities=21%  Similarity=0.315  Sum_probs=23.9

Q ss_pred             hhcccCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q psy114          543 KYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRL  590 (609)
Q Consensus       543 ~~~~~~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl  590 (609)
                      .+.+.|..|+..+|.+...+.+++.....+++.+.++.+.+..+--++
T Consensus        89 ~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~  136 (239)
T COG1579          89 RELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERL  136 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444555555555555555555555444444444444444444443333

>KOG0995|consensus

Probab=90.53  E-value=2.3  Score=47.67  Aligned_cols=56  Identities=23%  Similarity=0.413  Sum_probs=38.4

Q ss_pred             cCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH---HHHHHHHHHHHHHHHhhhh
Q psy114          547 GDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSV---GKEYDRLLKEHEKVQKVVT  602 (609)
Q Consensus       547 ~~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l---~~eydrl~~e~~~l~~~~~  602 (609)
                      ...+++++|++|+++++++.++-+.+.+.||+|.+..   ..++.|.--|.++|+..+.
T Consensus       291 ~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~  349 (581)
T KOG0995|consen  291 HMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELN  349 (581)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence            3455677788888888887777777788888877654   3556666666666665544

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch

Probab=90.36  E-value=7.3  Score=36.48  Aligned_cols=47  Identities=28%  Similarity=0.416  Sum_probs=17.9

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy114          552 IKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQ  598 (609)
Q Consensus       552 ~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~  598 (609)
                      +++|+.++++++.++..++.+.-+++++...+..--..+.+|.++++
T Consensus        75 ~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk  121 (151)
T PF11559_consen   75 VERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLK  121 (151)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333333333333333333333333333333

pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.

>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana

Probab=90.30  E-value=2.8  Score=41.14  Aligned_cols=53  Identities=19%  Similarity=0.208  Sum_probs=30.4

Q ss_pred             hhcccCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy114          543 KYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHE  595 (609)
Q Consensus       543 ~~~~~~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~  595 (609)
                      .++..+..++.+|+.+.+..+++.+...+++..||..++.+..+-+..--+.+
T Consensus       131 ~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e~~F~  183 (190)
T PF05266_consen  131 SEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAELEFQ  183 (190)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555566666666665555554455556666666666666665555544443

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=89.89  E-value=1.4  Score=46.64  Aligned_cols=44  Identities=16%  Similarity=0.292  Sum_probs=16.6

Q ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy114          554 RLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKV  597 (609)
Q Consensus       554 ~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l  597 (609)
                      +|.+||++.+++....++++..++++.+.+.+|-.+...+++.+
T Consensus        61 ~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~  104 (314)
T PF04111_consen   61 ELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNEL  104 (314)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333333333333333333333333333

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>PRK10884 SH3 domain-containing protein; Provisional

Probab=89.87  E-value=1.5  Score=43.63  Aligned_cols=17  Identities=24%  Similarity=0.343  Sum_probs=7.4

Q ss_pred             CHHHHHHHHHHHHHHHH
Q psy114          548 DSDEIKRLKEKLSKTEE  564 (609)
Q Consensus       548 ~~~e~~~lk~~l~~~~~  564 (609)
                      |+++.++|++|++...+
T Consensus       137 L~~~n~~L~~~l~~~~~  153 (206)
T PRK10884        137 LKEENQKLKNQLIVAQK  153 (206)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            44444444444444433

>KOG0995|consensus

Probab=89.85  E-value=4.7  Score=45.32  Aligned_cols=29  Identities=17%  Similarity=0.343  Sum_probs=13.0

Q ss_pred             hHHHhhhhhHHHHHHHHhhhhHHHHHHHh
Q psy114          484 IKRLKEKLSKTEEELKKEKTNSAALKSQA  512 (609)
Q Consensus       484 I~~i~~~l~~li~qla~~~~~~ea~~kQa  512 (609)
                      +....++|..+|.+........+.+++--
T Consensus       240 l~~~n~~l~e~i~e~ek~~~~~eslre~~  268 (581)
T KOG0995|consen  240 LKKTNRELEEMINEREKDPGKEESLREKK  268 (581)
T ss_pred             HHHHHHHHHHHHHHHhcCcchHHHHHHHH
Confidence            34444555555554444444444444433

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=88.96  E-value=4  Score=47.69  Aligned_cols=84  Identities=18%  Similarity=0.217  Sum_probs=53.1

Q ss_pred             HHhhhhHHHHHHHHHHHHHHHHHhhhcCCCcchhhcccCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q psy114          510 SQADSVGKEYDRLLKEHEKVQKVVTEQGDKKDDKYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDR  589 (609)
Q Consensus       510 kQa~sa~~~ak~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydr  589 (609)
                      +++.......++.-++-+.+.+.+...   .+.++.+.+.++++++++++.+...++...+.+++.+++|.+.+.+++++
T Consensus       391 ~~~~~~~~~~~~~e~el~~l~~~l~~~---~~~e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  467 (650)
T TIGR03185       391 DAKSQLLKELRELEEELAEVDKKISTI---PSEEQIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTLDE  467 (650)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcC---CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444444555555555555554321   12245666777777777777777777777777788888888888887777


Q ss_pred             HHHHHHH
Q psy114          590 LLKEHEK  596 (609)
Q Consensus       590 l~~e~~~  596 (609)
                      +.++..+
T Consensus       468 ~~~~~~~  474 (650)
T TIGR03185       468 KTKQKIN  474 (650)
T ss_pred             HHHHHHh
Confidence            6555433

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=88.95  E-value=15  Score=34.17  Aligned_cols=94  Identities=19%  Similarity=0.321  Sum_probs=58.5

Q ss_pred             hHHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhcCCCcchhhcccCHHHHHHHHHHHHHHHHHHHHhhh
Q psy114          492 SKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKKDDKYQKGDSDEIKRLKEKLSKTEEELKKEKT  571 (609)
Q Consensus       492 ~~li~qla~~~~~~ea~~kQa~sa~~~ak~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~e~~~lk~~l~~~~~~l~~~~~  571 (609)
                      .-+..+|+......+.++..+++..+.-...-++.+.+...            .+.-+++++.|+.++.....++...+.
T Consensus         6 l~v~~kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~d------------aEn~k~eie~L~~el~~lt~el~~L~~   73 (140)
T PF10473_consen    6 LHVEEKLKESESEKDSLEDHVESLERELEMSQENKECLILD------------AENSKAEIETLEEELEELTSELNQLEL   73 (140)
T ss_pred             HHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34566777777888888888888877655544444333222            222356677777777777777777777


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy114          572 NSAALKNQADSVGKEYDRLLKEHEKV  597 (609)
Q Consensus       572 ~~~~lkkQ~~~l~~eydrl~~e~~~l  597 (609)
                      |+.++++.-+.|.++-...-+..+.|
T Consensus        74 EL~~l~sEk~~L~k~lq~~q~kv~eL   99 (140)
T PF10473_consen   74 ELDTLRSEKENLDKELQKKQEKVSEL   99 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77777766666665555554444433

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=88.91  E-value=4.1  Score=50.43  Aligned_cols=9  Identities=0%  Similarity=-0.319  Sum_probs=5.6

Q ss_pred             CceEEEecC
Q psy114          211 GQLLCAFTI  219 (609)
Q Consensus       211 ~~~~C~F~~  219 (609)
                      .++.|.+|.
T Consensus        23 ~~~~~i~G~   31 (1164)
T TIGR02169        23 KGFTVISGP   31 (1164)
T ss_pred             CCeEEEECC
Confidence            456677764

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>KOG0933|consensus

Probab=88.74  E-value=4.6  Score=48.09  Aligned_cols=46  Identities=26%  Similarity=0.354  Sum_probs=24.9

Q ss_pred             cccCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q psy114          545 QKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRL  590 (609)
Q Consensus       545 ~~~~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl  590 (609)
                      .+.+..+++.+|.++++..+++++.+++++.|+-..|.+.+|-+-+
T Consensus       789 lkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~  834 (1174)
T KOG0933|consen  789 LKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSL  834 (1174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445555555566665555566666655555555555554444433

>KOG0994|consensus

Probab=88.36  E-value=4.1  Score=49.00  Aligned_cols=54  Identities=24%  Similarity=0.216  Sum_probs=38.8

Q ss_pred             cccCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy114          545 QKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQ  598 (609)
Q Consensus       545 ~~~~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~  598 (609)
                      ..+|...+++||.+..+-+.+.+.+++.+.+.|.||..-.++.+.|-+.++...
T Consensus      1621 ~~eL~~~~e~lk~~~~qns~~A~~a~~~a~sa~~~A~~a~q~~~~lq~~~~~~~ 1674 (1758)
T KOG0994|consen 1621 LGELETRMEELKHKAAQNSAEAKQAEKTAGSAKEQALSAEQGLEILQKYYELVD 1674 (1758)
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445566677777777777777788888888888888887777776655554433

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=88.19  E-value=4.8  Score=42.26  Aligned_cols=35  Identities=14%  Similarity=0.330  Sum_probs=20.2

Q ss_pred             hHHHhhhhhHHHHHHHHhhhhHHHHHHHhhhhHHH
Q psy114          484 IKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKE  518 (609)
Q Consensus       484 I~~i~~~l~~li~qla~~~~~~ea~~kQa~sa~~~  518 (609)
                      |..+..||..-|...+.+...+..+..|.......
T Consensus         6 L~~LNdRla~YIekVr~LE~~N~~Le~~i~~~~~~   40 (312)
T PF00038_consen    6 LQSLNDRLASYIEKVRFLEQENKRLESEIEELREK   40 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhc
Confidence            44556666666777777666666666666555444

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>PRK10884 SH3 domain-containing protein; Provisional

Probab=87.91  E-value=2  Score=42.67  Aligned_cols=6  Identities=17%  Similarity=0.003  Sum_probs=3.1

Q ss_pred             CChhhH
Q psy114          480 DSDEIK  485 (609)
Q Consensus       480 ~~~~I~  485 (609)
                      ...||+
T Consensus        76 ~~GWV~   81 (206)
T PRK10884         76 RTAWIP   81 (206)
T ss_pred             CEEeEE
Confidence            345663

>smart00787 Spc7 Spc7 kinetochore protein

Probab=87.78  E-value=12  Score=39.54  Aligned_cols=113  Identities=18%  Similarity=0.218  Sum_probs=49.6

Q ss_pred             HHhhhhhHHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhcCCCcchhhcccCHHHHHHHHHHHHHHHHH
Q psy114          486 RLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKKDDKYQKGDSDEIKRLKEKLSKTEEE  565 (609)
Q Consensus       486 ~i~~~l~~li~qla~~~~~~ea~~kQa~sa~~~ak~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~e~~~lk~~l~~~~~~  565 (609)
                      .+...+..|-...+.+++..+.+..=.....+-...++.+-..|++...+-.. -+.++.+.+++++.++..++..+.++
T Consensus       148 ~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~-~d~~eL~~lk~~l~~~~~ei~~~~~~  226 (312)
T smart00787      148 GLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELED-CDPTELDRAKEKLKKLLQEIMIKVKK  226 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh-CCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444455555555555554444444444444455555555555443332111 11233344444444444444444444


Q ss_pred             HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy114          566 LKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQK  599 (609)
Q Consensus       566 l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~  599 (609)
                      +...+.++..++...+....+-..+.++.+++++
T Consensus       227 l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~  260 (312)
T smart00787      227 LEELEEELQELESKIEDLTNKKSELNTEIAEAEK  260 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444444444444444444444444444443

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>KOG1003|consensus

Probab=87.68  E-value=7.1  Score=38.12  Aligned_cols=54  Identities=19%  Similarity=0.289  Sum_probs=36.9

Q ss_pred             cccCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy114          545 QKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQ  598 (609)
Q Consensus       545 ~~~~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~  598 (609)
                      +..+..+.++.+.+++.+.++|+.++.-.+-+-+....|.++-|+|-+.....+
T Consensus       132 ee~~~q~~d~~e~~ik~ltdKLkEaE~rAE~aERsVakLeke~DdlE~kl~~~k  185 (205)
T KOG1003|consen  132 EEKLEQKEEKYEEELKELTDKLKEAETRAEFAERRVAKLEKERDDLEEKLEEAK  185 (205)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHcccHHHHHHhhHHHH
Confidence            344455667778888888888888777777666777777777777755544433

>PF15254 CCDC14: Coiled-coil domain-containing protein 14

Probab=87.59  E-value=6.6  Score=45.58  Aligned_cols=117  Identities=14%  Similarity=0.156  Sum_probs=57.2

Q ss_pred             HHhhhhhHHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhcC------CCcchhhcccCHHHHHHHHHHH
Q psy114          486 RLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQG------DKKDDKYQKGDSDEIKRLKEKL  559 (609)
Q Consensus       486 ~i~~~l~~li~qla~~~~~~ea~~kQa~sa~~~ak~~~~e~~~l~~~~~~~~------~~~~~~~~~~~~~e~~~lk~~l  559 (609)
                      +++-.=.+|-+||....++.|.++.-.|..-+.-...-+||..+.+.+.++.      ++.-+.|..+++-|+++...+.
T Consensus       431 sLqSlN~~Lq~ql~es~k~~e~lq~kneellk~~e~q~~Enk~~~~~~~ekd~~l~~~kq~~d~e~~rik~ev~eal~~~  510 (861)
T PF15254_consen  431 SLQSLNMSLQNQLQESLKSQELLQSKNEELLKVIENQKEENKRLRKMFQEKDQELLENKQQFDIETTRIKIEVEEALVNV  510 (861)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333334444444444444444443333333333333344444433332211      1111233444555555555555


Q ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy114          560 SKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQKVVT  602 (609)
Q Consensus       560 ~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~~  602 (609)
                      +...=+|+.+|.|-.+|.--..+=..|..||-|=.-.||+.++
T Consensus       511 k~~q~kLe~sekEN~iL~itlrQrDaEi~RL~eLtR~LQ~Sma  553 (861)
T PF15254_consen  511 KSLQFKLEASEKENQILGITLRQRDAEIERLRELTRTLQNSMA  553 (861)
T ss_pred             HHHhhhHHHHHhhhhHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555556666666666666556666777888666666776654

>KOG4674|consensus

Probab=87.25  E-value=7.7  Score=49.45  Aligned_cols=114  Identities=26%  Similarity=0.328  Sum_probs=74.2

Q ss_pred             hhHHHhhhhhHHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHH---HhhhcCCCcchhhcccCHHHHHHHHHHH
Q psy114          483 EIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQK---VVTEQGDKKDDKYQKGDSDEIKRLKEKL  559 (609)
Q Consensus       483 ~I~~i~~~l~~li~qla~~~~~~ea~~kQa~sa~~~ak~~~~e~~~l~~---~~~~~~~~~~~~~~~~~~~e~~~lk~~l  559 (609)
                      .|..++.++.+|-..++.+......++.+.+--+.+-+++-++++.=++   .+-++..+.+..+.++|..++..||++|
T Consensus      1244 k~qEl~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k~k~~d~~~~~kL~~ei~~Lk~el 1323 (1822)
T KOG4674|consen 1244 KIQELRDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDLLEKYKDSDKNDYEKLKSEISRLKEEL 1323 (1822)
T ss_pred             HHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHH
Confidence            4566667777777777777777777777777777776777666666544   3334445556677778888888888888


Q ss_pred             HHHHHHHHHhhhhHHHHH----HHHHHHHHHHHHHHHHHHH
Q psy114          560 SKTEEELKKEKTNSAALK----NQADSVGKEYDRLLKEHEK  596 (609)
Q Consensus       560 ~~~~~~l~~~~~~~~~lk----kQ~~~l~~eydrl~~e~~~  596 (609)
                      +.++........++..||    +|.+.+..+-+-+.++.++
T Consensus      1324 ~~ke~~~~el~~~~~~~q~~~k~qld~l~~e~~~lt~~~~q 1364 (1822)
T KOG4674|consen 1324 EEKENLIAELKKELNRLQEKIKKQLDELNNEKANLTKELEQ 1364 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            877776665555555555    5555555555444444433

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=87.24  E-value=11  Score=35.27  Aligned_cols=103  Identities=20%  Similarity=0.306  Sum_probs=47.5

Q ss_pred             hhHHHhhhhhHHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhcCCCcchhhcccCHHHHHHHHHHHHHH
Q psy114          483 EIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKKDDKYQKGDSDEIKRLKEKLSKT  562 (609)
Q Consensus       483 ~I~~i~~~l~~li~qla~~~~~~ea~~kQa~sa~~~ak~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~e~~~lk~~l~~~  562 (609)
                      .|.++++++..|=.++..+......++..++......    ..++.+            ..-+..|.++++...+.|+..
T Consensus        36 EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~----~~~E~l------------~rriq~LEeele~ae~~L~e~   99 (143)
T PF12718_consen   36 EITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRK----SNAEQL------------NRRIQLLEEELEEAEKKLKET   99 (143)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH----HhHHHH------------HhhHHHHHHHHHHHHHHHHHH
Confidence            4566666666565666555555555443333322211    111111            122334445555555555555


Q ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy114          563 EEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQKVV  601 (609)
Q Consensus       563 ~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~  601 (609)
                      .+.|..++..++.+-.+...|..+-|.+-+.+..+..+.
T Consensus       100 ~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel~~k~  138 (143)
T PF12718_consen  100 TEKLREADVKAEHFERKVKALEQERDQWEEKYEELEEKY  138 (143)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            555554444444444554444444444444444444443

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>PRK04863 mukB cell division protein MukB; Provisional

Probab=86.84  E-value=5.8  Score=50.42  Aligned_cols=52  Identities=13%  Similarity=0.167  Sum_probs=27.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy114          549 SDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQKV  600 (609)
Q Consensus       549 ~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~  600 (609)
                      .+++++++.++++..+++.+++.+++.+++|...+..+.+.+-.+...++..
T Consensus       368 eeeLeeleeeleeleeEleelEeeLeeLqeqLaelqqel~elQ~el~q~qq~  419 (1486)
T PRK04863        368 NEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQA  419 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444445555555555555566666666555555665555555554443

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=86.75  E-value=4.2  Score=38.03  Aligned_cols=21  Identities=29%  Similarity=0.286  Sum_probs=9.3

Q ss_pred             HHHHHHhhhhHHHHHHHHHHH
Q psy114          506 AALKSQADSVGKEYDRLLKEH  526 (609)
Q Consensus       506 ea~~kQa~sa~~~ak~~~~e~  526 (609)
                      .+++-.+++|..-|..+-++.
T Consensus         3 ~~lk~E~d~a~~r~e~~e~~~   23 (143)
T PF12718_consen    3 QALKLEADNAQDRAEELEAKV   23 (143)
T ss_pred             HHHHHhHHHHHHHHHHHHHHH
Confidence            344444444444444443333

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]

Probab=86.74  E-value=8.1  Score=42.38  Aligned_cols=32  Identities=28%  Similarity=0.444  Sum_probs=20.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q psy114          550 DEIKRLKEKLSKTEEELKKEKTNSAALKNQAD  581 (609)
Q Consensus       550 ~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~  581 (609)
                      +.+++|+.|++.++++++..+...+.|++|.+
T Consensus       330 g~l~kl~~eie~kEeei~~L~~~~d~L~~q~~  361 (622)
T COG5185         330 GKLEKLKSEIELKEEEIKALQSNIDELHKQLR  361 (622)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            44666666776666666666666666666654

>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]

Probab=86.67  E-value=17  Score=36.71  Aligned_cols=113  Identities=17%  Similarity=0.245  Sum_probs=60.9

Q ss_pred             HHHhhhhhHHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhcCCCcchhhcccCHHHHHHHHHHHHHHHH
Q psy114          485 KRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKKDDKYQKGDSDEIKRLKEKLSKTEE  564 (609)
Q Consensus       485 ~~i~~~l~~li~qla~~~~~~ea~~kQa~sa~~~ak~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~e~~~lk~~l~~~~~  564 (609)
                      .-+.-.|..+-.+|..++...+..+.....+.+.+++...+.+++...+...-...++.--.....+++.|+..++..+.
T Consensus        27 ~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~E~LAr~al~~~~~le~~~~~~~~  106 (225)
T COG1842          27 KMLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQAGNEDLAREALEEKQSLEDLAKALEA  106 (225)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444455555566666666666665555555655555555555544221111111111122334455566666666666


Q ss_pred             HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy114          565 ELKKEKTNSAALKNQADSVGKEYDRLLKEHEKV  597 (609)
Q Consensus       565 ~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l  597 (609)
                      .+..+..-++.||++...|...|..+-.+++.+
T Consensus       107 ~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l  139 (225)
T COG1842         107 ELQQAEEQVEKLKKQLAALEQKIAELRAKKEAL  139 (225)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666666667777777777776666665555544

>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]

Probab=86.63  E-value=24  Score=31.90  Aligned_cols=107  Identities=15%  Similarity=0.150  Sum_probs=58.8

Q ss_pred             hhhHHHhhhhhHHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhcCCCcchhhcccCHHHHHHHHHHHHH
Q psy114          482 DEIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKKDDKYQKGDSDEIKRLKEKLSK  561 (609)
Q Consensus       482 ~~I~~i~~~l~~li~qla~~~~~~ea~~kQa~sa~~~ak~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~e~~~lk~~l~~  561 (609)
                      |.+....+++-.|..++.........+..|-.-    .++-++|-+.+.....-.+    ..++--.+..-+++..+|++
T Consensus         6 p~~q~~l~q~QqLq~ql~~~~~qk~~le~qL~E----~~~al~Ele~l~eD~~vYk----~VG~llvk~~k~~~~~eL~e   77 (119)
T COG1382           6 PEVQAQLAQLQQLQQQLQKVILQKQQLEAQLKE----IEKALEELEKLDEDAPVYK----KVGNLLVKVSKEEAVDELEE   77 (119)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhcCCcccHHHH----HhhhHHhhhhHHHHHHHHHH
Confidence            566777777777777777777666666544433    2233333333211100000    00000011122344444443


Q ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy114          562 TEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQK  599 (609)
Q Consensus       562 ~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~  599 (609)
                      .   ++.-+..+.+|.+|-+.+..+|+.|-.+.+++-+
T Consensus        78 r---~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~~l~  112 (119)
T COG1382          78 R---KETLELRIKTLEKQEEKLQERLEELQSEIQKALG  112 (119)
T ss_pred             H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            3   3344568889999999999999999888666654

>KOG0996|consensus

Probab=86.56  E-value=7.9  Score=46.92  Aligned_cols=27  Identities=11%  Similarity=0.048  Sum_probs=12.0

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy114          570 KTNSAALKNQADSVGKEYDRLLKEHEK  596 (609)
Q Consensus       570 ~~~~~~lkkQ~~~l~~eydrl~~e~~~  596 (609)
                      +.+++.|++-.+...+-|+.|...+..
T Consensus       506 esel~~L~~~~~~~~~~~e~lk~~L~~  532 (1293)
T KOG0996|consen  506 ESELDILLSRHETGLKKVEELKGKLLA  532 (1293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444444444444444444433333

>PF14235 DUF4337: Domain of unknown function (DUF4337)

Probab=86.50  E-value=3.4  Score=39.28  Aligned_cols=46  Identities=20%  Similarity=0.357  Sum_probs=32.5

Q ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy114          553 KRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQ  598 (609)
Q Consensus       553 ~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~  598 (609)
                      +++++++++-+++.++-++|.+.+.+|++....|+|++...|+...
T Consensus        69 ~~~~~~i~~Y~~~~~~~~~e~~~l~~~A~~~e~~~d~~~~~~~~f~  114 (157)
T PF14235_consen   69 AAYQKKIARYKKEKARYKSEAEELEAKAKEAEAESDHALHHHHRFD  114 (157)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcccchhH
Confidence            3444444444444445556889999999999999999988877643

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=86.49  E-value=6.7  Score=49.01  Aligned_cols=47  Identities=26%  Similarity=0.437  Sum_probs=24.4

Q ss_pred             HHHhhhhhHHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q psy114          485 KRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQK  531 (609)
Q Consensus       485 ~~i~~~l~~li~qla~~~~~~ea~~kQa~sa~~~ak~~~~e~~~l~~  531 (609)
                      ..+..++..+..+++........+++|.+++.....++.++.+.+..
T Consensus       379 ~~~~~~~~~~~~~~~~~~~~l~~l~~~i~~l~~~~~~~~~~~~~~~~  425 (1163)
T COG1196         379 EALREELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKE  425 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444455555555555555555555555555555555544433

>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans

Probab=86.42  E-value=4.5  Score=38.52  Aligned_cols=110  Identities=19%  Similarity=0.285  Sum_probs=56.3

Q ss_pred             hhhHHHhhhhhHHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhcC-------------CCcchhhcccC
Q psy114          482 DEIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQG-------------DKKDDKYQKGD  548 (609)
Q Consensus       482 ~~I~~i~~~l~~li~qla~~~~~~ea~~kQa~sa~~~ak~~~~e~~~l~~~~~~~~-------------~~~~~~~~~~~  548 (609)
                      +.+..+.|.++..+-.|.++-+.+.       .....-..+-++++.|.......+             .+....+.+.+
T Consensus        22 e~v~~LmP~VV~vLE~Le~~~~~n~-------~~~~e~~~L~~d~e~L~~q~~~ek~~r~~~e~~l~~~Ed~~~~e~k~L   94 (158)
T PF09744_consen   22 EAVKGLMPKVVRVLELLESLASRNQ-------EHEVELELLREDNEQLETQYEREKELRKQAEEELLELEDQWRQERKDL   94 (158)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhh-------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3566777777766666654443333       222333334444444322111100             11122445555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy114          549 SDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQ  598 (609)
Q Consensus       549 ~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~  598 (609)
                      ...++.|+.+.+.+...++........+..+=..+.++|+++.+.|.++=
T Consensus        95 ~~~v~~Le~e~r~L~~~~~~~~~q~~rlee~e~~l~~e~~~l~er~~e~l  144 (158)
T PF09744_consen   95 QSQVEQLEEENRQLELKLKNLSDQSSRLEEREAELKKEYNRLHERERELL  144 (158)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHHHHH
Confidence            56666666666555544433333334555666667778888888777753

Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.

>PRK11281 hypothetical protein; Provisional

Probab=86.03  E-value=8.6  Score=47.47  Aligned_cols=114  Identities=11%  Similarity=0.167  Sum_probs=67.9

Q ss_pred             hhhhHHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhcCCCc-chhhcccCHHHHHHHHHHHHHHHHHHH
Q psy114          489 EKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKK-DDKYQKGDSDEIKRLKEKLSKTEEELK  567 (609)
Q Consensus       489 ~~l~~li~qla~~~~~~ea~~kQa~sa~~~ak~~~~e~~~l~~~~~~~~~~~-~~~~~~~~~~e~~~lk~~l~~~~~~l~  567 (609)
                      ..-..++.+.....+..++++++++.|-+..+....+-+.+++..+....+. .......+...+.++..+|++..++|.
T Consensus        66 ~~tL~~L~qi~~~~~~~~~L~k~l~~Ap~~l~~a~~~Le~Lk~~~~~~~~~~~~~~Sl~qLEq~L~q~~~~Lq~~Q~~La  145 (1113)
T PRK11281         66 EQTLALLDKIDRQKEETEQLKQQLAQAPAKLRQAQAELEALKDDNDEETRETLSTLSLRQLESRLAQTLDQLQNAQNDLA  145 (1113)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccccccccccccccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334577788888888888888888888887777776666655322211111 111123345555566666666666666


Q ss_pred             HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy114          568 KEKTNSAALKNQADSVGKEYDRLLKEHEKVQKVVT  602 (609)
Q Consensus       568 ~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~~  602 (609)
                      ..+.++.++..|-|.-+.+-..-....+++++++.
T Consensus       146 ~~NsqLi~~qT~PERAQ~~lsea~~RlqeI~~~L~  180 (1113)
T PRK11281        146 EYNSQLVSLQTQPERAQAALYANSQRLQQIRNLLK  180 (1113)
T ss_pred             HHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHh
Confidence            66666666666666665554444455555555554

>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein

Probab=85.76  E-value=9.7  Score=37.59  Aligned_cols=80  Identities=13%  Similarity=0.167  Sum_probs=44.8

Q ss_pred             hHHHhhhhhHHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhcCCCcchhhcccCHHHHHHHHHHHHHHH
Q psy114          484 IKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKKDDKYQKGDSDEIKRLKEKLSKTE  563 (609)
Q Consensus       484 I~~i~~~l~~li~qla~~~~~~ea~~kQa~sa~~~ak~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~e~~~lk~~l~~~~  563 (609)
                      |+.--..|++|-.+|+..++...+...++..+..+...--.+-+.....+...     ..+...+++++.+|+.|+..+.
T Consensus        26 ~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~-----~~Ea~lLrekl~~le~El~~Lr  100 (202)
T PF06818_consen   26 VNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRK-----KNEAELLREKLGQLEAELAELR  100 (202)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHH-----hCHHHHhhhhhhhhHHHHHHHH
Confidence            44555677888888888888888888888877776654322222222221111     1223344455555555555555


Q ss_pred             HHHHH
Q psy114          564 EELKK  568 (609)
Q Consensus       564 ~~l~~  568 (609)
                      +++..
T Consensus       101 ~~l~~  105 (202)
T PF06818_consen  101 EELAC  105 (202)
T ss_pred             HHHHh
Confidence            54444

Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane

>KOG0977|consensus

Probab=85.69  E-value=5.5  Score=44.99  Aligned_cols=96  Identities=11%  Similarity=0.230  Sum_probs=65.0

Q ss_pred             HHHHHhhhhHHHHHHHHHHHHHHHHHhhhcC--CCcchhhcccCHHHHHHHHHHHHHHHH----HHHHhhhhHHHHHHHH
Q psy114          507 ALKSQADSVGKEYDRLLKEHEKVQKVVTEQG--DKKDDKYQKGDSDEIKRLKEKLSKTEE----ELKKEKTNSAALKNQA  580 (609)
Q Consensus       507 a~~kQa~sa~~~ak~~~~e~~~l~~~~~~~~--~~~~~~~~~~~~~e~~~lk~~l~~~~~----~l~~~~~~~~~lkkQ~  580 (609)
                      .++++++.++.....+-||-......+..-.  ..+.+.-+..|.++|+.|+-+|.+-.+    +|...++++.-|+.|+
T Consensus       279 ~i~~~~~~~~~~~~~~rEEl~~~R~~i~~Lr~klselE~~n~~L~~~I~dL~~ql~e~~r~~e~~L~~kd~~i~~mReec  358 (546)
T KOG0977|consen  279 EIRTSAERANVEQNYAREELRRIRSRISGLRAKLSELESRNSALEKRIEDLEYQLDEDQRSFEQALNDKDAEIAKMREEC  358 (546)
T ss_pred             HHHhhhccccchhHHHHHHHHHHHhcccchhhhhccccccChhHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHH
Confidence            4444555555555555555544433322211  222345567788888888887766544    4666788999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhh
Q psy114          581 DSVGKEYDRLLKEHEKVQKVVT  602 (609)
Q Consensus       581 ~~l~~eydrl~~e~~~l~~~~~  602 (609)
                      ..|..||..|++=...|+..+.
T Consensus       359 ~~l~~Elq~LlD~ki~Ld~EI~  380 (546)
T KOG0977|consen  359 QQLSVELQKLLDTKISLDAEIA  380 (546)
T ss_pred             HHHHHHHHHhhchHhHHHhHHH
Confidence            9999999999999999987765

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease

Probab=85.64  E-value=24  Score=34.79  Aligned_cols=116  Identities=16%  Similarity=0.278  Sum_probs=59.0

Q ss_pred             hHHHhhhhhHHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhcCCCcchhhcccCHHHHHHHHHHHHHHH
Q psy114          484 IKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKKDDKYQKGDSDEIKRLKEKLSKTE  563 (609)
Q Consensus       484 I~~i~~~l~~li~qla~~~~~~ea~~kQa~sa~~~ak~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~e~~~lk~~l~~~~  563 (609)
                      |+.-...+.+|-.+|+......-++.+...-....-.+.-++...|++..++++.    .|-..|..++..++.++++.+
T Consensus        63 l~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L~~L~~dknL----~eReeL~~kL~~~~~~l~~~~  138 (194)
T PF15619_consen   63 LQRHNEEVRVLRERLRKSQEQERELERKLKDKDEELLKTKDELKHLKKLSEDKNL----AEREELQRKLSQLEQKLQEKE  138 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc----hhHHHHHHHHHHHHHHHHHHH
Confidence            4455555666666666666666666655555555544444444444444332211    222334444444444444444


Q ss_pred             HHHHHh-----------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy114          564 EELKKE-----------KTNSAALKNQADSVGKEYDRLLKEHEKVQKVVTE  603 (609)
Q Consensus       564 ~~l~~~-----------~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~~~  603 (609)
                      +++...           ..++.+-++....+..+++.|.+|.+.|++.+.+
T Consensus       139 ~ki~~Lek~leL~~k~~~rql~~e~kK~~~~~~~~~~l~~ei~~L~~klkE  189 (194)
T PF15619_consen  139 KKIQELEKQLELENKSFRRQLASEKKKHKEAQEEVKSLQEEIQRLNQKLKE  189 (194)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            433222           2223333444455556666777777777776653

>PRK10929 putative mechanosensitive channel protein; Provisional

Probab=85.59  E-value=7.8  Score=47.75  Aligned_cols=116  Identities=12%  Similarity=0.118  Sum_probs=70.2

Q ss_pred             HHhhhhhHHHHHHHHhhhhH----HHHHHHhhhhHHHHHHHHHHHHHHHHHhhhcCCCcchhhcccCHHHHHHHHHHHHH
Q psy114          486 RLKEKLSKTEEELKKEKTNS----AALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKKDDKYQKGDSDEIKRLKEKLSK  561 (609)
Q Consensus       486 ~i~~~l~~li~qla~~~~~~----ea~~kQa~sa~~~ak~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~e~~~lk~~l~~  561 (609)
                      ....++..+-++++......    ..+.++-+.. .+|++-+.+.+..-++....+..-.......+..|..-++.+++.
T Consensus       113 ~~~~~L~~~q~~l~~~~~~~~~~~~~l~~~pq~~-~~~~~~l~~i~~~L~~~~~~~~~l~~a~~~~lqae~~~l~~~~~~  191 (1109)
T PRK10929        113 QVSSQLLEKSRQAQQEQDRAREISDSLSQLPQQQ-TEARRQLNEIERRLQTLGTPNTPLAQAQLTALQAESAALKALVDE  191 (1109)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHhhchhhH-HHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHHHHH
Confidence            44444444444555444444    4444444444 334444444433211111111111234455667777888888888


Q ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy114          562 TEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQKVVT  602 (609)
Q Consensus       562 ~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~~  602 (609)
                      .+.++..+.+-.+-.++|.+-+.++++++-.+.+.||+.+.
T Consensus       192 l~~~l~s~~~~~~L~~~q~dl~~~~~~~l~~~~~~Lq~~in  232 (1109)
T PRK10929        192 LELAQLSANNRQELARLRSELAKKRSQQLDAYLQALRNQLN  232 (1109)
T ss_pred             HHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888888888888999999999999999888888887665

>PRK02224 chromosome segregation protein; Provisional

Probab=85.47  E-value=7.4  Score=47.02  Aligned_cols=54  Identities=15%  Similarity=0.307  Sum_probs=27.2

Q ss_pred             ccCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy114          546 KGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQK  599 (609)
Q Consensus       546 ~~~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~  599 (609)
                      +.+..+++.+++++++.+.++..+..+++.+....+.+..+++.+.++...++.
T Consensus       380 ~~~~~~l~~l~~el~el~~~l~~~~~~~~~~e~~l~~l~~~~~~l~~~~~~~~~  433 (880)
T PRK02224        380 EDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEA  433 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444555555555555544444444444445555555555555555555444

>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms

Probab=85.31  E-value=19  Score=38.95  Aligned_cols=62  Identities=16%  Similarity=0.277  Sum_probs=49.0

Q ss_pred             cccCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCC
Q psy114          545 QKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQKVVTEQGD  606 (609)
Q Consensus       545 ~~~~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~~~~~~  606 (609)
                      ++-+..+++.|-.+++....+|.+++......-.-...+++|+.++.+|.++.++++++.|+
T Consensus       261 Ek~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emeerg~  322 (359)
T PF10498_consen  261 EKYINNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEERGS  322 (359)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            44456667777777777777777777777777778888899999999999999999886554

Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.

>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=84.77  E-value=17  Score=36.74  Aligned_cols=50  Identities=16%  Similarity=0.355  Sum_probs=37.7

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy114          551 EIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQKV  600 (609)
Q Consensus       551 e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~  600 (609)
                      ++......+...+..++.++.|.+..+..+..+..||.+|.++.++++.+
T Consensus        54 eLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e  103 (230)
T PF10146_consen   54 ELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKE  103 (230)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334445555555566677788888888999999999999999999877

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=84.70  E-value=7  Score=32.15  Aligned_cols=20  Identities=20%  Similarity=0.340  Sum_probs=8.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHh
Q psy114          580 ADSVGKEYDRLLKEHEKVQK  599 (609)
Q Consensus       580 ~~~l~~eydrl~~e~~~l~~  599 (609)
                      -+.|..|..+|.+|++.-+.
T Consensus        41 ~~~L~~en~~L~~e~~~~~~   60 (72)
T PF06005_consen   41 NEELKEENEQLKQERNAWQE   60 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444433

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication

Probab=84.52  E-value=3.2  Score=36.87  Aligned_cols=47  Identities=23%  Similarity=0.319  Sum_probs=37.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy114          549 SDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQKVVT  602 (609)
Q Consensus       549 ~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~~  602 (609)
                      -..+..|++++...-       .++.+||+|...|..|=.+|.-|+++|+..+.
T Consensus         7 ~~~l~~le~~l~~l~-------~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~   53 (107)
T PF06156_consen    7 FDRLDQLEQQLGQLL-------EELEELKKQLQELLEENARLRIENEHLRERLE   53 (107)
T ss_pred             HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344556666665554       48999999999999999999999999998876

SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.

>TIGR00606 rad50 rad50

Probab=84.18  E-value=11  Score=47.63  Aligned_cols=108  Identities=11%  Similarity=0.189  Sum_probs=54.2

Q ss_pred             hhHHHhhhhhHHHHHHHHhhhhHHHHHHHhhhhHHHHHHH---HHHHHHHHHHhhhcCCCcchhhcccCHHHHHHHHHHH
Q psy114          483 EIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRL---LKEHEKVQKVVTEQGDKKDDKYQKGDSDEIKRLKEKL  559 (609)
Q Consensus       483 ~I~~i~~~l~~li~qla~~~~~~ea~~kQa~sa~~~ak~~---~~e~~~l~~~~~~~~~~~~~~~~~~~~~e~~~lk~~l  559 (609)
                      .+..+...+..+-.+++.+....+.+..+.+..++.-+.+   +.+-...+..+.+     ....-..+..++++|++++
T Consensus       823 s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ki~el~~~klkl~~-----~l~~r~~le~~L~el~~el  897 (1311)
T TIGR00606       823 TVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGT-----NLQRRQQFEEQLVELSTEV  897 (1311)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH
Confidence            3455666666555666666555555565555555555555   2222211111111     0122334455555555555


Q ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy114          560 SKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHE  595 (609)
Q Consensus       560 ~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~  595 (609)
                      .+...+++..+.+++-++...+.+..+|+++..+..
T Consensus       898 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  933 (1311)
T TIGR00606       898 QSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKE  933 (1311)
T ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence            555555555555555555555555555555544433

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family

Probab=83.99  E-value=15  Score=34.90  Aligned_cols=52  Identities=13%  Similarity=0.282  Sum_probs=32.6

Q ss_pred             cCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy114          547 GDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQ  598 (609)
Q Consensus       547 ~~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~  598 (609)
                      .+..|.++|+.|++++.++.+..+++++.|+++.+-+..+|.-|..=....+
T Consensus       101 ~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~RAR  152 (161)
T TIGR02894       101 ALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMDRAR  152 (161)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445566666666666666666666677777777777777766655444444

In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.

>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA

Probab=83.98  E-value=9  Score=40.33  Aligned_cols=84  Identities=15%  Similarity=0.240  Sum_probs=54.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHhhhcCCCcchhhcccCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy114          514 SVGKEYDRLLKEHEKVQKVVTEQGDKKDDKYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKE  593 (609)
Q Consensus       514 sa~~~ak~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e  593 (609)
                      ...+-++|-|-.|..|...     +....=+...|+.+++.|++.+..+.++..+.-.+++.+|.....|..|.|-|.++
T Consensus        88 evEekyrkAMv~naQLDNe-----k~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~  162 (302)
T PF09738_consen   88 EVEEKYRKAMVSNAQLDNE-----KSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQ  162 (302)
T ss_pred             HHHHHHHHHHHHHhhhchH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445566777777665111     00012335667777777777777777777777778888888888888888888777


Q ss_pred             HHHHHhhhh
Q psy114          594 HEKVQKVVT  602 (609)
Q Consensus       594 ~~~l~~~~~  602 (609)
                      ..+....++
T Consensus       163 L~~rdeli~  171 (302)
T PF09738_consen  163 LKQRDELIE  171 (302)
T ss_pred             HHHHHHHHH
Confidence            766554443

They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.

>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

Probab=83.86  E-value=16  Score=39.33  Aligned_cols=47  Identities=17%  Similarity=0.321  Sum_probs=28.6

Q ss_pred             hhHHHhhhhhHHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHH
Q psy114          483 EIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKV  529 (609)
Q Consensus       483 ~I~~i~~~l~~li~qla~~~~~~ea~~kQa~sa~~~ak~~~~e~~~l  529 (609)
                      .+..|.+.|..+-+||.......++....-+-++.++.+--+|.+..
T Consensus        75 qlddi~~qlr~~rtel~~a~~~k~~~e~er~~~~~El~~~r~e~~~v  121 (499)
T COG4372          75 QLDDIRPQLRALRTELGTAQGEKRAAETEREAARSELQKARQEREAV  121 (499)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45678888887777777666666666655444555555554444443

>KOG0933|consensus

Probab=83.81  E-value=7.3  Score=46.46  Aligned_cols=111  Identities=24%  Similarity=0.374  Sum_probs=48.7

Q ss_pred             HHhhhhhHHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhcCCC--cchhhcccCHHHHHHHHHHHHHHH
Q psy114          486 RLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDK--KDDKYQKGDSDEIKRLKEKLSKTE  563 (609)
Q Consensus       486 ~i~~~l~~li~qla~~~~~~ea~~kQa~sa~~~ak~~~~e~~~l~~~~~~~~~~--~~~~~~~~~~~e~~~lk~~l~~~~  563 (609)
                      .-.+|+..|..++.......++..+--+.....+.++..|.+.+++........  ........+..++.+|+.++.+..
T Consensus       784 ~re~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~  863 (1174)
T KOG0933|consen  784 NRERRLKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVE  863 (1174)
T ss_pred             hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            334445555555555555555555555555555555555555554433221100  011223334444444444444444


Q ss_pred             HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy114          564 EELKKEKTNSAALKNQADSVGKEYDRLLKEHEK  596 (609)
Q Consensus       564 ~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~  596 (609)
                      +.+.++++++...|+---+..+|.+.++.+-++
T Consensus       864 ~~~~~~~~el~~~k~k~~~~dt~i~~~~~~~e~  896 (1174)
T KOG0933|consen  864 KDVKKAQAELKDQKAKQRDIDTEISGLLTSQEK  896 (1174)
T ss_pred             hHHHHHHHHHHHHHHHHHhhhHHHhhhhhHHHH
Confidence            444444444444444333444444444433333

>PHA02562 46 endonuclease subunit; Provisional

Probab=83.58  E-value=11  Score=42.94  Aligned_cols=46  Identities=20%  Similarity=0.183  Sum_probs=27.5

Q ss_pred             hcccCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q psy114          544 YQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDR  589 (609)
Q Consensus       544 ~~~~~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydr  589 (609)
                      +.+.++.++++|+.+..+..++|...+.+++.++.+-+.+.+|-++
T Consensus       359 ~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~~ke~~~  404 (562)
T PHA02562        359 KAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVKEKYH  404 (562)
T ss_pred             HHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455566666666665555556666666666666666666555544

>KOG0980|consensus

Probab=83.39  E-value=16  Score=43.14  Aligned_cols=33  Identities=12%  Similarity=0.181  Sum_probs=18.8

Q ss_pred             hhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHh
Q psy114          501 EKTNSAALKSQADSVGKEYDRLLKEHEKVQKVV  533 (609)
Q Consensus       501 ~~~~~ea~~kQa~sa~~~ak~~~~e~~~l~~~~  533 (609)
                      +....+...||.+++..+-...-+++..|...+
T Consensus       443 lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~l  475 (980)
T KOG0980|consen  443 LLRKYDDIQKQLESAEQSIDDVEEENTNLNDQL  475 (980)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            344455566677777766665555555554433

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion

Probab=83.36  E-value=17  Score=35.25  Aligned_cols=59  Identities=12%  Similarity=0.312  Sum_probs=42.2

Q ss_pred             hcccCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy114          544 YQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQKVVT  602 (609)
Q Consensus       544 ~~~~~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~~  602 (609)
                      +.+...++++.++...++..++.....+++..++.+++.+..++.++.++++.+++.++
T Consensus       124 ~~~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  182 (191)
T PF04156_consen  124 LLKSVEERLDSLDESIKELEKEIRELQKELQDSREEVQELRSQLERLQENLQQLEEKIQ  182 (191)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455555666666666666666666666667778888888888888888888887665

The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].

>smart00503 SynN Syntaxin N-terminal domain

Probab=83.33  E-value=20  Score=31.48  Aligned_cols=31  Identities=16%  Similarity=0.398  Sum_probs=26.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy114          572 NSAALKNQADSVGKEYDRLLKEHEKVQKVVT  602 (609)
Q Consensus       572 ~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~~  602 (609)
                      +.-+.+-|.+.|.+++-.++.+++.+|....
T Consensus        83 ~~r~~~~q~~~L~~~f~~~m~~fq~~Q~~~~  113 (117)
T smart00503       83 SDRTRKAQTEKLRKKFKEVMNEFQRLQRKYR  113 (117)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3447789999999999999999999998654

Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p

>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin

Probab=83.32  E-value=7  Score=40.32  Aligned_cols=26  Identities=23%  Similarity=0.367  Sum_probs=13.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy114          572 NSAALKNQADSVGKEYDRLLKEHEKV  597 (609)
Q Consensus       572 ~~~~lkkQ~~~l~~eydrl~~e~~~l  597 (609)
                      -+.+|++===....||++|-+|.+++
T Consensus       212 RL~sLq~vRPAfmdEyEklE~EL~~l  237 (267)
T PF10234_consen  212 RLQSLQSVRPAFMDEYEKLEEELQKL  237 (267)
T ss_pred             HHHHHHhcChHHHHHHHHHHHHHHHH
Confidence            33333333333446777776666554

Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].

>PRK15422 septal ring assembly protein ZapB; Provisional

Probab=83.01  E-value=7.2  Score=32.43  Aligned_cols=53  Identities=19%  Similarity=0.173  Sum_probs=37.5

Q ss_pred             hhcccCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy114          543 KYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQKVVT  602 (609)
Q Consensus       543 ~~~~~~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~~  602 (609)
                      +.+.-|+-|+++||.+=....       .+++.++.+-+.|..|.+.|.+||+.-|.++.
T Consensus        18 dtI~LLqmEieELKekn~~L~-------~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr   70 (79)
T PRK15422         18 DTITLLQMEIEELKEKNNSLS-------QEVQNAQHQREELERENNHLKEQQNGWQERLQ   70 (79)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345555666666665554444       47778888888888899999999988777665

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=82.97  E-value=40  Score=35.33  Aligned_cols=41  Identities=17%  Similarity=0.264  Sum_probs=31.9

Q ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy114          562 TEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQKVVT  602 (609)
Q Consensus       562 ~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~~  602 (609)
                      ....+...+.++..|+.+.+...+||..|++-.-.|...++
T Consensus       260 ~~~~i~~le~el~~l~~~~~~~~~ey~~Ll~~K~~Ld~EIa  300 (312)
T PF00038_consen  260 YQAEIAELEEELAELREEMARQLREYQELLDVKLALDAEIA  300 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence            34445566788889999999999999999988777776554

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences

Probab=82.93  E-value=3  Score=39.94  Aligned_cols=57  Identities=25%  Similarity=0.373  Sum_probs=30.8

Q ss_pred             hhcccCHHHHHHHHHHHHHHHHHHHHhhhhHHHH---------HHHHHHHHHHHHHHHHHHHHHHh
Q psy114          543 KYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAAL---------KNQADSVGKEYDRLLKEHEKVQK  599 (609)
Q Consensus       543 ~~~~~~~~e~~~lk~~l~~~~~~l~~~~~~~~~l---------kkQ~~~l~~eydrl~~e~~~l~~  599 (609)
                      ++...+..++..|+++++..+.+.+..+.++..|         +.+.+.|..|...|.+....|+.
T Consensus        72 eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~  137 (169)
T PF07106_consen   72 EELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS  137 (169)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4455555556666666666665555555555444         44455555555555555444443

TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=82.85  E-value=26  Score=38.01  Aligned_cols=28  Identities=25%  Similarity=0.236  Sum_probs=11.7

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q psy114          551 EIKRLKEKLSKTEEELKKEKTNSAALKN  578 (609)
Q Consensus       551 e~~~lk~~l~~~~~~l~~~~~~~~~lkk  578 (609)
                      ++..++.++...+.++..++.+++.++.
T Consensus       204 ~~~~~~~~l~~~~~~l~~~~~~l~~~~~  231 (423)
T TIGR01843       204 ERAEAQGELGRLEAELEVLKRQIDELQL  231 (423)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444444444443333

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional

Probab=82.61  E-value=16  Score=43.28  Aligned_cols=120  Identities=16%  Similarity=0.229  Sum_probs=77.0

Q ss_pred             hhHHHhhhhhHHHHHHHHhhhhHHHHHHHhhh--hHHHHHHHHHHHHHHHHHhhhc---------CCCcchhhcccCHHH
Q psy114          483 EIKRLKEKLSKTEEELKKEKTNSAALKSQADS--VGKEYDRLLKEHEKVQKVVTEQ---------GDKKDDKYQKGDSDE  551 (609)
Q Consensus       483 ~I~~i~~~l~~li~qla~~~~~~ea~~kQa~s--a~~~ak~~~~e~~~l~~~~~~~---------~~~~~~~~~~~~~~e  551 (609)
                      .+.++..++..+-.+|+......++++++-..  .+..++.++++-..++..+...         .-+++.-....++.+
T Consensus       268 a~~fL~~qL~~l~~~L~~aE~~l~~fr~~~~~~d~~~ea~~~l~~~~~l~~ql~~l~~~~~~l~~~~~~~hP~v~~l~~~  347 (726)
T PRK09841        268 SLEFLQRQLPEVRSELDQAEEKLNVYRQQRDSVDLNLEAKAVLEQIVNVDNQLNELTFREAEISQLYKKDHPTYRALLEK  347 (726)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCchHHHHHHH
Confidence            46788888988889999999999999987533  2233444444443332221110         011222334445555


Q ss_pred             HHHHHHHHHHHHHHHH---HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy114          552 IKRLKEKLSKTEEELK---KEKTNSAALKNQADSVGKEYDRLLKEHEKVQKVVT  602 (609)
Q Consensus       552 ~~~lk~~l~~~~~~l~---~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~~  602 (609)
                      +..|++++++.+.++.   ..+.++..|+.+.+-...=|+.|+...++++-+.+
T Consensus       348 ~~~L~~~~~~l~~~~~~~p~~e~~~~~L~R~~~~~~~lY~~lL~r~~e~~i~~a  401 (726)
T PRK09841        348 RQTLEQERKRLNKRVSAMPSTQQEVLRLSRDVEAGRAVYLQLLNRQQELSISKS  401 (726)
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            5566665555554443   35778889999999999999999999998865543

>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex

Probab=82.50  E-value=9.7  Score=43.69  Aligned_cols=43  Identities=23%  Similarity=0.305  Sum_probs=25.3

Q ss_pred             HhhhhhHHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHH
Q psy114          487 LKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKV  529 (609)
Q Consensus       487 i~~~l~~li~qla~~~~~~ea~~kQa~sa~~~ak~~~~e~~~l  529 (609)
                      +......++.++.....++...++|++-..+.-..+.+.+..|
T Consensus       504 laQE~~~~~~elKk~qedi~~~k~qee~~~kqie~Lee~~~~L  546 (786)
T PF05483_consen  504 LAQETSDMALELKKQQEDINNSKKQEEKMLKQIENLEETNTQL  546 (786)
T ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444455666666666666666666666666555555555444

Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex

>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function

Probab=82.35  E-value=8.6  Score=32.82  Aligned_cols=50  Identities=20%  Similarity=0.155  Sum_probs=37.1

Q ss_pred             hhHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy114          102 NFYIS-----GFSLFLWLVIRQIIQLIAQQANLLAQNEASMNQARQAAVAAQALL  151 (609)
Q Consensus       102 N~Yis-----Gf~LfL~lvi~r~~~li~~~~~l~~~~~a~~kqa~~a~~~a~~~~  151 (609)
                      |+||.     -|++++.++.+++-.+=++.+.|.++++.++.+.+-+++..|.+=
T Consensus         3 ~l~iv~~~~~v~~~i~~y~~~k~~ka~~~~~kL~~en~qlk~Ek~~~~~qvkn~~   57 (87)
T PF10883_consen    3 NLQIVGGVGAVVALILAYLWWKVKKAKKQNAKLQKENEQLKTEKAVAETQVKNAK   57 (87)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45664     245556667788888888899999998888888777777776654

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=82.27  E-value=15  Score=45.92  Aligned_cols=19  Identities=16%  Similarity=0.288  Sum_probs=6.9

Q ss_pred             hHHHHHHHHHHHHHHHHHH
Q psy114          572 NSAALKNQADSVGKEYDRL  590 (609)
Q Consensus       572 ~~~~lkkQ~~~l~~eydrl  590 (609)
                      +.+.+.+|.+.+..+-+.+
T Consensus       885 ~~~~l~~~l~~~~~~~~~~  903 (1163)
T COG1196         885 EKEELEEELRELESELAEL  903 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=82.01  E-value=18  Score=41.59  Aligned_cols=117  Identities=10%  Similarity=0.243  Sum_probs=58.1

Q ss_pred             hhHHHhhhhhHHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhh---cC-C-CcchhhcccCHHHHHHHHH
Q psy114          483 EIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTE---QG-D-KKDDKYQKGDSDEIKRLKE  557 (609)
Q Consensus       483 ~I~~i~~~l~~li~qla~~~~~~ea~~kQa~sa~~~ak~~~~e~~~l~~~~~~---~~-~-~~~~~~~~~~~~e~~~lk~  557 (609)
                      .+..+..+|..|=..+.++........+-.....+.-...-+++..++..+..   .+ . +.+.+....+.++++++++
T Consensus       283 ~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~  362 (569)
T PRK04778        283 KNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEK  362 (569)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHH
Confidence            45566666666666666655555555555555554444444555554443222   11 1 1222334555666666666


Q ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy114          558 KLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQK  599 (609)
Q Consensus       558 ~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~  599 (609)
                      +++...+.+.........++++.+.+.++.+.+.+++.+++.
T Consensus       363 ~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e  404 (569)
T PRK04778        363 QYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSE  404 (569)
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666555555444333444444444444444444444444433

>KOG4360|consensus

Probab=81.65  E-value=15  Score=40.85  Aligned_cols=39  Identities=23%  Similarity=0.279  Sum_probs=22.6

Q ss_pred             HHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHh
Q psy114          495 EEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVV  533 (609)
Q Consensus       495 i~qla~~~~~~ea~~kQa~sa~~~ak~~~~e~~~l~~~~  533 (609)
                      ..+|+-..+..-.+++..++-++...+++||+.+|-..+
T Consensus       204 ~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsql  242 (596)
T KOG4360|consen  204 VKELRDTNTQARSGQEELQSKTKELSRQQEENSKLLSQL  242 (596)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345555555555555666666666666666666654443

>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily

Probab=81.64  E-value=17  Score=40.84  Aligned_cols=31  Identities=32%  Similarity=0.372  Sum_probs=18.1

Q ss_pred             hhHHHhhhhhHHHHHHHHhhhhHHHHHHHhh
Q psy114          483 EIKRLKEKLSKTEEELKKEKTNSAALKSQAD  513 (609)
Q Consensus       483 ~I~~i~~~l~~li~qla~~~~~~ea~~kQa~  513 (609)
                      .|..+..++..+-.+++...+...++++|..
T Consensus       205 ~l~~l~~~l~~~~~~l~~~~a~~~~l~~~l~  235 (498)
T TIGR03007       205 EISEAQEELEAARLELNEAIAQRDALKRQLG  235 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3555666666666666666666666665533

Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.

>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []

Probab=81.62  E-value=34  Score=35.21  Aligned_cols=112  Identities=17%  Similarity=0.193  Sum_probs=67.4

Q ss_pred             HHhhhhhHHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhcCCCcchhhcccCHH-------HHHHHHHH
Q psy114          486 RLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKKDDKYQKGDSD-------EIKRLKEK  558 (609)
Q Consensus       486 ~i~~~l~~li~qla~~~~~~ea~~kQa~sa~~~ak~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~-------e~~~lk~~  558 (609)
                      ....+|..|-.||.++.+...-=+=|.+|...|-.|--...+.-+..     .....-|+..+.+       -.+||.-+
T Consensus        15 ~aLqKIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e-----~s~LkREnq~l~e~c~~lek~rqKlshd   89 (307)
T PF10481_consen   15 RALQKIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNE-----YSALKRENQSLMESCENLEKTRQKLSHD   89 (307)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhh-----hhhhhhhhhhHHHHHHHHHHHHHHhhHH
Confidence            34445566677777877777666667777776654421111110000     0111122333333       33445555


Q ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy114          559 LSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQKVVT  602 (609)
Q Consensus       559 l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~~  602 (609)
                      |..++-.+.-.|..+..-|+|.+.|..|.-|+..|..+.|....
T Consensus        90 lq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~~~  133 (307)
T PF10481_consen   90 LQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQQAAS  133 (307)
T ss_pred             HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            55555555666778889999999999999999999998886544

Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].

>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family

Probab=81.37  E-value=8.9  Score=36.36  Aligned_cols=34  Identities=18%  Similarity=0.375  Sum_probs=18.0

Q ss_pred             HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy114          564 EELKKEKTNSAALKNQADSVGKEYDRLLKEHEKV  597 (609)
Q Consensus       564 ~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l  597 (609)
                      .+.++.+.++..|++|-+.|.+|+..|.++++..
T Consensus       104 ~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~  137 (161)
T TIGR02894       104 KENERLKNQNESLQKRNEELEKELEKLRQRLSTI  137 (161)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444455556666666666666664444443

In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.

>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=81.28  E-value=16  Score=37.28  Aligned_cols=38  Identities=18%  Similarity=0.278  Sum_probs=16.0

Q ss_pred             ccCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q psy114          546 KGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSV  583 (609)
Q Consensus       546 ~~~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l  583 (609)
                      ..+..|++.|+...+..++.+...+.+++.|+.|.+.+
T Consensus        59 ~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~   96 (251)
T PF11932_consen   59 RQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQI   96 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444444444444444444444444444433

However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.

>KOG0977|consensus

Probab=81.27  E-value=18  Score=41.08  Aligned_cols=121  Identities=19%  Similarity=0.280  Sum_probs=70.2

Q ss_pred             hhhHHHhhhhhHHHHHHHHhhhhHHHHHHHhhhhHHH--------HHHHHHHHHHHHHHhhhcCCC--cchhhcccCHHH
Q psy114          482 DEIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKE--------YDRLLKEHEKVQKVVTEQGDK--KDDKYQKGDSDE  551 (609)
Q Consensus       482 ~~I~~i~~~l~~li~qla~~~~~~ea~~kQa~sa~~~--------ak~~~~e~~~l~~~~~~~~~~--~~~~~~~~~~~e  551 (609)
                      ..|..+.-||..-|.-.+.+.+.+-+|..+..-+..+        +..|=.|-..+.+.+.+...+  +.+.++.++..|
T Consensus        42 ~El~~LNDRLA~YIekVR~LEaqN~~L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~e  121 (546)
T KOG0977|consen   42 KELQELNDRLAVYIEKVRFLEAQNRKLEHDINLLRGVVGRETSGIKAKYEAELATARKLLDETARERAKLEIEITKLREE  121 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence            3577788888888888888888888888877665544        223333333333333332211  123567778888


Q ss_pred             HHHHHHHHHHHHHHHHH--------------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy114          552 IKRLKEKLSKTEEELKK--------------EKTNSAALKNQADSVGKEYDRLLKEHEKVQKVVT  602 (609)
Q Consensus       552 ~~~lk~~l~~~~~~l~~--------------~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~~  602 (609)
                      +++|+..+.++.+.+..              .++++..+|.--+-+..|-.||..|+..|..+++
T Consensus       122 ~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~  186 (546)
T KOG0977|consen  122 LKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELA  186 (546)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence            88888777777544322              2344444444444444444555555555554443

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=80.81  E-value=7.9  Score=44.79  Aligned_cols=53  Identities=25%  Similarity=0.382  Sum_probs=28.0

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH-------HHHHHHHHHHHHHHHHHHhh
Q psy114          548 DSDEIKRLKEKLSKTEEELKKEKTNSAALKNQA-------DSVGKEYDRLLKEHEKVQKV  600 (609)
Q Consensus       548 ~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~-------~~l~~eydrl~~e~~~l~~~  600 (609)
                      |.+++.+|+.++...++.++....++..|+.|-       ..-...|..|..|++.|+.+
T Consensus       200 L~~kl~~l~~~l~~~~e~le~K~qE~~~Lq~q~dq~~~~Lqqy~a~~q~l~~e~e~L~~q  259 (617)
T PF15070_consen  200 LQKKLGELQEKLHNLKEKLELKSQEAQSLQEQRDQYLGHLQQYVAAYQQLASEKEELHKQ  259 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444455555444444444444555554443       33445666777777777654

>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins

Probab=80.74  E-value=6.9  Score=37.86  Aligned_cols=76  Identities=14%  Similarity=0.253  Sum_probs=36.8

Q ss_pred             HHHhhhhHHHHHHHHHHHHHHH-HHhhhcCCCcchhhcccCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q psy114          509 KSQADSVGKEYDRLLKEHEKVQ-KVVTEQGDKKDDKYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEY  587 (609)
Q Consensus       509 ~kQa~sa~~~ak~~~~e~~~l~-~~~~~~~~~~~~~~~~~~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~ey  587 (609)
                      ..||+...++-...+.++-... +.+..+  .+.+......+..+.+|+.|+....+      .++..|+.+.+.|..|+
T Consensus        18 ~~QAe~i~~~l~~~l~~~~~~~~~~~vtk--~d~e~~~~~~~a~~~eLr~el~~~~k------~~~~~lr~~~e~L~~ei   89 (177)
T PF07798_consen   18 EEQAEAIMKALREVLNDSLEKVAQDLVTK--SDLENQEYLFKAAIAELRSELQNSRK------SEFAELRSENEKLQREI   89 (177)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHH
Confidence            3566666666666665553211 111000  00112233334455555555554332      56666666666666666


Q ss_pred             HHHHH
Q psy114          588 DRLLK  592 (609)
Q Consensus       588 drl~~  592 (609)
                      |.|-.
T Consensus        90 e~l~~   94 (177)
T PF07798_consen   90 EKLRQ   94 (177)
T ss_pred             HHHHH
Confidence            65544

>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6

Probab=80.71  E-value=13  Score=32.63  Aligned_cols=27  Identities=33%  Similarity=0.454  Sum_probs=13.3

Q ss_pred             cccCHHHHHHHHHHHHHHHHHHHHhhh
Q psy114          545 QKGDSDEIKRLKEKLSKTEEELKKEKT  571 (609)
Q Consensus       545 ~~~~~~e~~~lk~~l~~~~~~l~~~~~  571 (609)
                      .+.+.++++++|++++..++++...+.
T Consensus        69 ~~~l~~e~~~lk~~i~~le~~~~~~e~   95 (108)
T PF02403_consen   69 AEELKAEVKELKEEIKELEEQLKELEE   95 (108)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334555555555555555543333333

1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....

>KOG4403|consensus

Probab=80.66  E-value=21  Score=38.85  Aligned_cols=25  Identities=28%  Similarity=0.449  Sum_probs=13.9

Q ss_pred             hcccCHHHHHHHHHHHHHHHHHHHH
Q psy114          544 YQKGDSDEIKRLKEKLSKTEEELKK  568 (609)
Q Consensus       544 ~~~~~~~e~~~lk~~l~~~~~~l~~  568 (609)
                      |++..++|+|.|..+|++++++|+.
T Consensus       303 e~e~~rkelE~lR~~L~kAEkele~  327 (575)
T KOG4403|consen  303 ENETSRKELEQLRVALEKAEKELEA  327 (575)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3444445666666666666665543

>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S

Probab=80.65  E-value=8.3  Score=31.91  Aligned_cols=15  Identities=40%  Similarity=0.565  Sum_probs=6.0

Q ss_pred             HHHHHHHHHHHHHHH
Q psy114          550 DEIKRLKEKLSKTEE  564 (609)
Q Consensus       550 ~e~~~lk~~l~~~~~  564 (609)
                      ++.++|+.+|..+++
T Consensus         5 ~qNk~L~~kL~~K~e   19 (76)
T PF11544_consen    5 KQNKELKKKLNDKQE   19 (76)
T ss_dssp             -HHHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHH
Confidence            344444444444433

cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.

>KOG3611|consensus

Probab=80.64  E-value=0.98  Score=53.02  Aligned_cols=36  Identities=25%  Similarity=0.681  Sum_probs=31.7

Q ss_pred             eeeeccccccCccccccccCCCC-CccCCCCCccccC
Q psy114          272 TKFMFFDCNTYSSCTQCVSSDFP-CDWCVDGHRCTHD  307 (609)
Q Consensus       272 ~~f~fydCs~~~~C~sCvsS~~p-C~WC~~~~~CT~~  307 (609)
                      ..+++-+|+.|..|..|.-.+|| |+|-...+.|++.
T Consensus       487 ~qvpl~~C~~y~~C~dcclarDPYCAWd~~~~~C~~~  523 (737)
T KOG3611|consen  487 VQVPLARCSRYGSCADCCLARDPYCAWDGVNSKCSLL  523 (737)
T ss_pred             EEeehhHhhcccchhhhhhccCCCccccCCCCcceEC
Confidence            46889999999999997666999 9999988999975

>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]

Probab=80.45  E-value=52  Score=30.92  Aligned_cols=110  Identities=15%  Similarity=0.291  Sum_probs=61.6

Q ss_pred             hhhhhHHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhc-C-----------------CCcch-------
Q psy114          488 KEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQ-G-----------------DKKDD-------  542 (609)
Q Consensus       488 ~~~l~~li~qla~~~~~~ea~~kQa~sa~~~ak~~~~e~~~l~~~~~~~-~-----------------~~~~~-------  542 (609)
                      ...+..|+.++.-.....+++..|....+.+-..+..--+.++..-... |                 .+.++       
T Consensus         5 ~~~le~l~a~lq~l~~qie~L~~~i~~l~~~~~e~~~~~~tl~~lk~~~~g~E~LVpvGag~fv~~kv~~~~kviV~iGs   84 (145)
T COG1730           5 QQELEELAAQLQILQSQIESLQAQIAALNAAISELQTAIETLENLKGAGEGKEVLVPVGAGLFVKAKVKDMDKVIVSIGS   84 (145)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEcCCCceEEEEeccCceEEEEcCC
Confidence            3456667777777777777777777777777666655555544321111 1                 00000       


Q ss_pred             --hhcccCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q psy114          543 --KYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQKVVTEQ  604 (609)
Q Consensus       543 --~~~~~~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~~~~  604 (609)
                        --+++..+=++-|++++++.++.+.       .|..-.+.|.+.++.+..+.++++.+....
T Consensus        85 g~~ae~~~~eAie~l~k~~~~l~~~~~-------~l~~~l~~l~~~~~~l~~~~q~~~q~~~~~  141 (145)
T COG1730          85 GYYAEKSADEAIEFLKKRIEELEKAIE-------KLQQALAELAQRIEQLEQEAQQLQQKQAAA  141 (145)
T ss_pred             ceeeeecHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence              0023333345666777666665333       344445556666667777777777655433

>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]

Probab=80.30  E-value=57  Score=34.14  Aligned_cols=60  Identities=18%  Similarity=0.313  Sum_probs=43.7

Q ss_pred             hhcccCHHHHHHHHHHHHHHHHHHHH------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy114          543 KYQKGDSDEIKRLKEKLSKTEEELKK------EKTNSAALKNQADSVGKEYDRLLKEHEKVQKVVT  602 (609)
Q Consensus       543 ~~~~~~~~e~~~lk~~l~~~~~~l~~------~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~~  602 (609)
                      +++..+.+++.+|+++|...+++++.      ..++++.+|+.+..+..+...|.++.++-.+++.
T Consensus       131 e~E~~lvq~I~~L~k~le~~~k~~e~~~~~~el~aei~~lk~~~~e~~eki~~la~eaqe~he~m~  196 (294)
T COG1340         131 EEERELVQKIKELRKELEDAKKALEENEKLKELKAEIDELKKKAREIHEKIQELANEAQEYHEEMI  196 (294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44566777788888888887765543      2467778888888888888888888777666554

>PRK11519 tyrosine kinase; Provisional

Probab=80.26  E-value=20  Score=42.50  Aligned_cols=118  Identities=16%  Similarity=0.231  Sum_probs=74.6

Q ss_pred             hhhHHHhhhhhHHHHHHHHhhhhHHHHHHHhhh--hHHHHHHHHHHHHHHHHHhhh----------cCCCcchhhcccCH
Q psy114          482 DEIKRLKEKLSKTEEELKKEKTNSAALKSQADS--VGKEYDRLLKEHEKVQKVVTE----------QGDKKDDKYQKGDS  549 (609)
Q Consensus       482 ~~I~~i~~~l~~li~qla~~~~~~ea~~kQa~s--a~~~ak~~~~e~~~l~~~~~~----------~~~~~~~~~~~~~~  549 (609)
                      ..+.++..++..+-.+|+......++++++-..  ....|+..++.-..++..+.+          ..++ +......+.
T Consensus       267 ~a~~fL~~ql~~l~~~L~~aE~~l~~fr~~~~~vd~~~ea~~~l~~~~~l~~ql~~l~~~~~~l~~~y~~-~hP~v~~l~  345 (719)
T PRK11519        267 KSLAFLAQQLPEVRSRLDVAENKLNAFRQDKDSVDLPLEAKAVLDSMVNIDAQLNELTFKEAEISKLYTK-EHPAYRTLL  345 (719)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cCcHHHHHH
Confidence            356788888988889999999999999887654  344555555444433322211          1111 122223334


Q ss_pred             HHHHHHHHHHHHHHHH---HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy114          550 DEIKRLKEKLSKTEEE---LKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQKV  600 (609)
Q Consensus       550 ~e~~~lk~~l~~~~~~---l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~  600 (609)
                      .+...|++++++.+.+   +-+.+.++..|+.+.+-..+-|+.|+...++++-+
T Consensus       346 ~~~~~L~~~~~~l~~~~~~lp~~e~~~~~L~Re~~~~~~lY~~lL~r~~e~~i~  399 (719)
T PRK11519        346 EKRKALEDEKAKLNGRVTAMPKTQQEIVRLTRDVESGQQVYMQLLNKQQELKIT  399 (719)
T ss_pred             HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            4444555544444433   34467788899999999999999999998887644

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)

Probab=80.13  E-value=20  Score=32.89  Aligned_cols=36  Identities=14%  Similarity=0.229  Sum_probs=23.4

Q ss_pred             hhcccCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q psy114          543 KYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKN  578 (609)
Q Consensus       543 ~~~~~~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkk  578 (609)
                      +....++.+...++.++.....++..+...++..+.
T Consensus        59 ~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~   94 (132)
T PF07926_consen   59 KELQQLREELQELQQEINELKAEAESAKAELEESEA   94 (132)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445666777777777777777666666666654444

These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore

>PF13870 DUF4201: Domain of unknown function (DUF4201)

Probab=80.07  E-value=28  Score=33.51  Aligned_cols=19  Identities=26%  Similarity=0.496  Sum_probs=12.3

Q ss_pred             HHHHHHHHHHHHHHHhhhh
Q psy114          584 GKEYDRLLKEHEKVQKVVT  602 (609)
Q Consensus       584 ~~eydrl~~e~~~l~~~~~  602 (609)
                      ..+||+..++..+++..+.
T Consensus       144 l~Dy~~~~~~~~~l~~~i~  162 (177)
T PF13870_consen  144 LRDYDKTKEEVEELRKEIK  162 (177)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3467777777777766543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	609
3okt_A	681	Mouse Plexin A2, Extracellular Domains 1-4 Length =		2e-13

>pdb|3OKT|A Chain A, Mouse Plexin A2, Extracellular Domains 1-4 Length = 681

Iteration: 1
 Score = 74.3 bits (181), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 43/114 (37%), Positives = 60/114 (52%), Gaps = 8/114 (7%)
Query: 197 RTLDLAIENLPELPGQLLCAFTIGETTVTTEAIKQTNG--VKCATPPTKDIPSIPVGQHN 254
           R L L + + P L   + CAF        TE   Q +G  V C +P  KD+P IP+ Q  
Sbjct: 545 RLLSLVVNDAPNLSEGIACAFG-----NLTEVEGQVSGSQVICISPGPKDVPVIPLDQDW 599
Query: 255 ITAKLSVRS-SNGPDFVTTKFMFFDCNTYSSCTQCVSSDFPCDWCVDGHRCTHD 307
              +L +RS   G  FV+T+F F++C+ +  C  CV+S F C WC   + CTHD
Sbjct: 600 FGLELQLRSKETGKIFVSTEFKFYNCSAHQLCLSCVNSAFRCHWCKYRNLCTHD 653

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	609
3oky_A	681	Plexin-A2; transmembrane, ligand, SEMA-domain, cel	5e-29
3oky_A	681	Plexin-A2; transmembrane, ligand, SEMA-domain, cel	3e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-11
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	4e-08
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	5e-06
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	4e-05
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	5e-05
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	9e-08
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	1e-04
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	8e-04
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	1e-06
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	2e-05
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	2e-04
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	1e-05
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	3e-04
2fxo_A	129	Myosin heavy chain, cardiac muscle beta isoform; c	2e-05
3nvn_B	476	Plexin-C1; beta-propeller, signaling, viral protei	4e-05
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	2e-04
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	2e-04
3al9_A	539	Plexin-A2; beta-propeller, membrane protein, signa	2e-04
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	3e-04
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	4e-04
4fww_A	527	Macrophage-stimulating protein receptor; beta-prop	4e-04
4fww_A	527	Macrophage-stimulating protein receptor; beta-prop	7e-04
3ol2_B	528	Plexin-B1; beta-propeller, signalling, extacellula	6e-04
1jad_A	251	PLC-beta, phospholipase C beta; alpha helical coil	8e-04

>3oky_A Plexin-A2; transmembrane, ligand, SEMA-domain, cell-CELL signalling, SI protein; HET: NAG; 2.19A {Mus musculus} PDB: 3okt_A* Length = 681

 Score =  121 bits (304), Expect = 5e-29
 Identities = 46/158 (29%), Positives = 66/158 (41%), Gaps = 5/158 (3%)

Query: 176 SYSTRVARSFSAQNGISDLKPRTLDLAIENLPELPGQLLCAFTIGETTVTTEAIKQTNGV 235
           S S  ++      +       R L L + + P L   + CAF         E     + V
Sbjct: 524 SISQCMSLEVHPNSISVSDHSRLLSLVVNDAPNLSEGIACAF---GNLTEVEGQVSGSQV 580

Query: 236 KCATPPTKDIPSIPVGQHNITAKLSVRSS-NGPDFVTTKFMFFDCNTYSSCTQCVSSDFP 294
            C +P  KD+P IP+ Q     +L +RS   G  FV+T+F F++C+ +  C  CV+S F 
Sbjct: 581 ICISPGPKDVPVIPLDQDWFGLELQLRSKETGKIFVSTEFKFYNCSAHQLCLSCVNSAFR 640

Query: 295 CDWCVDGHRCTHDTAENCRNDILITGVSRVGPSFRSGP 332
           C WC   + CTHD    C        VS   P      
Sbjct: 641 CHWCKYRNLCTHDPTT-CSFQEGRINVSEDCPQGTKHH 677

>3oky_A Plexin-A2; transmembrane, ligand, SEMA-domain, cell-CELL signalling, SI protein; HET: NAG; 2.19A {Mus musculus} PDB: 3okt_A* Length = 681

 Score = 52.8 bits (125), Expect = 3e-07
 Identities = 31/209 (14%), Positives = 59/209 (28%), Gaps = 25/209 (11%)

Query: 272 TKFMFFDCNTYSSCTQCVSSDFP-CDWCVDGHRCTHDTAENCRNDILITGVSRVGPSFRS 330
           T+     C  Y++C +C+SS  P C WC           + C+        +     F +
Sbjct: 473 TRVPVESCEQYTTCGECLSSGDPHCGWC--ALHNMCSRRDKCQR-------AWEANRFAA 523

Query: 331 GPAFCPTIRGTDIGSQEILVPSGVKKAVKVKVHIVGQFIVQTRFVCLFNIEGRFTKVNAQ 390
             + C ++          + P+ +  +   ++  +           +    G  T+V  Q
Sbjct: 524 SISQCMSLE---------VHPNSISVSDHSRLLSLVVNDAPNLSEGIACAFGNLTEVEGQ 574

Query: 391 LLGDVIYCDPMEFTYNSSVSNINASLAVIWGGSKPLDNPDNVHVNI--YKCRDLANNCGL 448
           + G  + C          +        +             V      Y C      C  
Sbjct: 575 VSGSQVICISPGPKDVPVIPLDQDWFGLELQLRSKETGKIFVSTEFKFYNCSAHQL-CLS 633

Query: 449 CLALPEKYGCGWCESSKRC-EIFEQCDKG 476
           C+     + C WC+    C      C   
Sbjct: 634 CVNSA--FRCHWCKYRNLCTHDPTTCSFQ 660

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 66.0 bits (160), Expect = 2e-11
 Identities = 98/653 (15%), Positives = 194/653 (29%), Gaps = 185/653 (28%)

Query: 25  PILSTQRLHKILKSKFVQGVKTQAGWYFGCILV----ILSLFFLDAIREMRKYASPEVKE 80
            ILS + +  I+ SK      +     F  +L     ++  F  + +R   K+    +K 
Sbjct: 44  SILSKEEIDHIIMSK---DAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKT 100

Query: 81  EAHGHLDAEMQNNMKLFRAQRNFYISGFSLFL-WLVIR--QIIQLIAQQANLLAQNEAS- 136
           E       +     +++  QR+   +   +F  + V R    ++L   +  LL    A  
Sbjct: 101 E-----QRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKL---RQALLELRPAKN 152

Query: 137 -----MNQARQAAVAAQALLDGPRGKWFGSHV-WAYL----TPNLL----------VTRS 176
                +  + +  VA    L           + W  L    +P  +          +  +
Sbjct: 153 VLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPN 212

Query: 177 YSTRVARSFSAQNGISDLKPRTLDLAIENLPELPGQLLC-----------AFTIG-ETTV 224
           +++R   S + +  I  ++     L           LL            AF +  +  +
Sbjct: 213 WTSRSDHSSNIKLRIHSIQAELRRLLKS--KPYENCLLVLLNVQNAKAWNAFNLSCKILL 270

Query: 225 TTEAIKQTNGVKCATPPTKDIPSIPVGQHNITAKLSVRSSNGPDFVTTKFMFFDCNTYSS 284
           TT   + T+ +  AT  T  I         +T                  +         
Sbjct: 271 TTRFKQVTDFLSAAT--TTHISLDHH-SMTLTPDEVKS------------LL------LK 309

Query: 285 CTQCVSSDFPCDWCVDGHRCTHDTAENCRNDILITGVSRVGPSFRSGPAFCPTIRGTDIG 344
              C   D P               E    +     +S +  S R G A     +  +  
Sbjct: 310 YLDCRPQDLP--------------REVLTTNPRR--LSIIAESIRDGLATWDNWKHVNC- 352

Query: 345 SQEILVPSGVKKAVKVKVHIVGQFIVQTRFVCLFNIEGRF---TKVNAQLL----GDVIY 397
                    +   ++  ++++     +  F  L  +   F     +   LL     DVI 
Sbjct: 353 -------DKLTTIIESSLNVLEPAEYRKMFDRLS-V---FPPSAHIPTILLSLIWFDVIK 401

Query: 398 CDPMEFTYNSSVSNINASLAVIWGGS-------------KPLDNPDNVH---VNIYKCRD 441
            D M    N        SL                      L+N   +H   V+ Y    
Sbjct: 402 SDVMVVV-NKLH---KYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPK 457

Query: 442 LANNCGLCLALPEKYGCGW----------CESSKRCEIFEQC--DKGLEGDSDEIKRLKE 489
             ++  L     ++Y   +           E  +R  +F     D          + L++
Sbjct: 458 TFDSDDLIPPYLDQY---FYSHIGHHLKNIEHPERMTLFRMVFLD---------FRFLEQ 505

Query: 490 KLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKKDDKYQKGDS 549
           K       ++ + T   A  S  +         L++ +  +  + +     D KY++   
Sbjct: 506 K-------IRHDSTAWNASGSILN--------TLQQLKFYKPYICDN----DPKYER--- 543

Query: 550 DEIKRLKEKLSKTEEELKKEKTNS---AALKNQADSVGKEYDRLLKEHEKVQK 599
             +  + + L K EE L   K       AL  + +++ +E       H++VQ+
Sbjct: 544 -LVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEE------AHKQVQR 589

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 55.5 bits (134), Expect = 4e-08
 Identities = 24/143 (16%), Positives = 66/143 (46%), Gaps = 15/143 (10%)

Query: 465  KRCEIFEQCDKGLEGDSDEIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLK 524
            +  E +++   GLE   ++I +L+ K+ +  +E K        + +   +   E ++L  
Sbjct: 914  RSVERYKKLHIGLE---NKIMQLQRKIDEQNKEYKSLL---EKMNNLEITYSTETEKLRS 967

Query: 525  EHEKVQKVVTEQGDKKDDKYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVG 584
            + E+++    E  +           + +  L+E+++K  +EL + +T    ++  AD   
Sbjct: 968  DVERLRMSEEEAKNAT---------NRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYK 1018

Query: 585  KEYDRLLKEHEKVQKVVTEQGDK 607
             E ++L+ E ++   ++  + ++
Sbjct: 1019 HETEQLVSELKEQNTLLKTEKEE 1041

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 48.6 bits (116), Expect = 5e-06
 Identities = 26/116 (22%), Positives = 49/116 (42%), Gaps = 6/116 (5%)

Query: 482  DEIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKKD 541
                   EKL    E L+  +  +    ++  S+ +E  +L KE  + Q       ++  
Sbjct: 956  ITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTI-EEWA 1014

Query: 542  DKYQKGDSDEIKRLKEKLSKTEEELKKEKTN-SAALKNQADSVGKEYDRLLKEHEK 596
            DKY+     E ++L  +L +    LK EK   +  + +QA  + +  ++ L E  K
Sbjct: 1015 DKYKH----ETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEETK 1066

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 45.9 bits (109), Expect = 4e-05
 Identities = 25/138 (18%), Positives = 52/138 (37%), Gaps = 16/138 (11%)

Query: 462  ESSKRCEIFEQCDKGLEGDSDEIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDR 521
              + +  ++ QC         E+K+LK +       +++ K     L+++      +  R
Sbjct: 884  HRTLKAIVYLQCCYRRMMAKRELKKLKIE----ARSVERYKKLHIGLENKI----MQLQR 935

Query: 522  LLKEHEKVQKVVTEQGDKKDDKYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQAD 581
             + E  K  K + E+ +  +               EKL    E L+  +  +    N+  
Sbjct: 936  KIDEQNKEYKSLLEKMNNLEI--------TYSTETEKLRSDVERLRMSEEEAKNATNRVL 987

Query: 582  SVGKEYDRLLKEHEKVQK 599
            S+ +E  +L KE  + Q 
Sbjct: 988  SLQEEIAKLRKELHQTQT 1005

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 45.5 bits (108), Expect = 5e-05
 Identities = 17/89 (19%), Positives = 43/89 (48%), Gaps = 3/89 (3%)

Query: 482  DEIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKKD 541
            +EI +L+++L +T+ E K  +  +   K + +   +    L +++  ++    E   +  
Sbjct: 991  EEIAKLRKELHQTQTEKKTIEEWADKYKHETE---QLVSELKEQNTLLKTEKEELNRRIH 1047

Query: 542  DKYQKGDSDEIKRLKEKLSKTEEELKKEK 570
            D+ ++      K+L E+  + E +L  E+
Sbjct: 1048 DQAKEITETMEKKLVEETKQLELDLNDER 1076

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 54.5 bits (131), Expect = 9e-08
 Identities = 23/140 (16%), Positives = 57/140 (40%), Gaps = 1/140 (0%)

Query: 470  FEQCDKGLEGDSDEIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKV 529
             E     LE    + ++ +++L K + +L+ E ++     ++  +   E    L + E+ 
Sbjct: 1037 HESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEE 1096

Query: 530  QKVVTEQGDKKDDKYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDR 589
             +    + + +  +       +I+ L+  +S  +E+L+ EK      + Q   + +E + 
Sbjct: 1097 LQAALARLEDETSQKNNALK-KIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEA 1155

Query: 590  LLKEHEKVQKVVTEQGDKKD 609
            L  E E        Q + + 
Sbjct: 1156 LKTELEDTLDTTATQQELRG 1175

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 44.4 bits (105), Expect = 1e-04
 Identities = 24/123 (19%), Positives = 47/123 (38%), Gaps = 4/123 (3%)

Query: 484  IKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQ---KVVTEQGDKK 540
            I+  +E+  + + E KK +     L+ Q +       +L  E        K + +     
Sbjct: 936  IEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIM 995

Query: 541  DDKYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQKV 600
            +D+  K  + E K L+E++S     L +E+  +  L    +        L    +K +K 
Sbjct: 996  EDQNNK-LTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKS 1054

Query: 601  VTE 603
              E
Sbjct: 1055 RQE 1057

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 41.4 bits (97), Expect = 8e-04
 Identities = 22/146 (15%), Positives = 65/146 (44%), Gaps = 2/146 (1%)

Query: 462  ESSKRCEIFEQCDKGLEGDSDEIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDR 521
            E   + E  ++  +  +    E+K L++K ++  EE    +    A         +   R
Sbjct: 858  EMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVR 917

Query: 522  LLKEHEKVQKVVTEQGDKKDDKYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQAD 581
            L  + +++++++ E   + ++  ++  S +++  K+K+ +   +L+++     A + +  
Sbjct: 918  LAAKKQELEEILHEMEARIEE--EEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQ 975

Query: 582  SVGKEYDRLLKEHEKVQKVVTEQGDK 607
                  D  +K+ E    ++ +Q +K
Sbjct: 976  LEKVTADGKIKKMEDDILIMEDQNNK 1001

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284

 Score = 49.3 bits (117), Expect = 1e-06
 Identities = 17/128 (13%), Positives = 52/128 (40%), Gaps = 5/128 (3%)

Query: 482 DEIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKKD 541
           DE+  L++KL  TE+EL K        + + +   K+      +   + + +    ++ D
Sbjct: 41  DELVSLQKKLKATEDELDKYSEALKDAQEKLELAEKKATDAEADVASLNRRIQLFEEELD 100

Query: 542 DKYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQKVV 601
                   + +    +KL + E+   + +     ++++A    ++ +    + ++ + + 
Sbjct: 101 RA-----QERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIA 155

Query: 602 TEQGDKKD 609
            +   K +
Sbjct: 156 EDADRKYE 163

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284

 Score = 45.4 bits (107), Expect = 2e-05
 Identities = 23/133 (17%), Positives = 52/133 (39%), Gaps = 1/133 (0%)

Query: 477 LEGDSDEIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQ 536
            E    E K + E   +  EE+ ++     +   +A+   +  +    E E+  K VT  
Sbjct: 144 QEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEEIKTVTNN 203

Query: 537 GDKKDDKYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEK 596
               + + +K  S +  + +E++    ++LK+ +T +   +     + K  D L  E   
Sbjct: 204 LKSLEAQAEKY-SQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYA 262

Query: 597 VQKVVTEQGDKKD 609
            +       ++ D
Sbjct: 263 QKLKYKAISEELD 275

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284

 Score = 42.7 bits (100), Expect = 2e-04
 Identities = 18/139 (12%), Positives = 56/139 (40%), Gaps = 8/139 (5%)

Query: 461 CESSKRCEIFEQCDKGLEGDSDEIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYD 520
              ++R ++FE+     +       +  E+  K  +E ++       ++S+A    ++ +
Sbjct: 86  ASLNRRIQLFEEELDRAQERLATALQKLEEAEKAADESERGM---KVIESRAQKDEEKME 142

Query: 521 RLLKEHEKVQKVVTEQGDKKDDKYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQA 580
               + ++ + +  +   K ++      + ++  ++  L + EE  +  +   A L+ + 
Sbjct: 143 IQEIQLKEAKHIAEDADRKYEEV-----ARKLVIIESDLERAEERAELSEGKCAELEEEI 197

Query: 581 DSVGKEYDRLLKEHEKVQK 599
            +V      L  + EK  +
Sbjct: 198 KTVTNNLKSLEAQAEKYSQ 216

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} Length = 256

 Score = 46.3 bits (109), Expect = 1e-05
 Identities = 19/144 (13%), Positives = 51/144 (35%), Gaps = 21/144 (14%)

Query: 477 LEGDSDEIKRLKEKLSKTEEELKKEKTNSAALKSQADSV----------------GKEYD 520
           L+   ++ +   + +   EEE    K   +  +                       +E  
Sbjct: 34  LDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKSERELR 93

Query: 521 RLLKEHEKVQKVVTEQGDKKDDKYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQA 580
            L  E +  ++   +   + ++       +EIKR  EK    ++E+ + +  +  L++  
Sbjct: 94  SLNIEEDIAKERSNQANREIENLQ-----NEIKRKSEKQEDLKKEMLELEKLALELESLV 148

Query: 581 DSVGKEYDRLLKEHEKVQKVVTEQ 604
           ++  K      +   K ++ + E+
Sbjct: 149 ENEVKNIKETQQIIFKKKEDLVEK 172

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} Length = 256

 Score = 42.0 bits (98), Expect = 3e-04
 Identities = 18/146 (12%), Positives = 54/146 (36%), Gaps = 23/146 (15%)

Query: 470 FEQCDKGLEGDSDEIKRLKEKLSKTEEELKKEKTNSAALKSQADSVG--KEYDRLLKEHE 527
            E  +K +    +E   LK ++SK E+ L+      A+++ +   +   +E   L  E +
Sbjct: 41  KEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKSERELRSLNIEED 100

Query: 528 KVQKVVTEQGDKKDDKYQKGDS--DEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGK 585
             ++   +   + ++   +     ++ + LK+++ + E+   + ++             +
Sbjct: 101 IAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESLVENEVKNIKETQQ 160

Query: 586 E-------------------YDRLLK 592
                               Y+R+ +
Sbjct: 161 IIFKKKEDLVEKTEPKIYSFYERIRR 186

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A Length = 129

 Score = 43.3 bits (102), Expect = 2e-05
 Identities = 21/118 (17%), Positives = 54/118 (45%), Gaps = 7/118 (5%)

Query: 482 DEIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKKD 541
            E+  +KE+ ++ +E L+K +     L+ +  S+ +E + L  + +  Q  + +  ++ D
Sbjct: 13  KEMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCD 72

Query: 542 D-KYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQ 598
                K        L+ K+ +  + L+ E+  +A L  +   +  E   L ++ + ++
Sbjct: 73  QLIKNKIQ------LEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDLE 124

>3nvn_B Plexin-C1; beta-propeller, signaling, viral protein-signaling protein C; HET: NDG NAG; 2.26A {Homo sapiens} PDB: 3nvq_B* Length = 476

 Score = 45.4 bits (106), Expect = 4e-05
 Identities = 17/73 (23%), Positives = 27/73 (36%), Gaps = 7/73 (9%)

Query: 266 GPDFVTTKFMFFDCNTYSSCTQCVSSDFP-CDWCVDGHRCTHDTAENCRNDILITGVSRV 324
                  +    +CN + SC++C+++  P C WC    RCT     +C +          
Sbjct: 408 TAGKEVRRIRVANCNKHKSCSECLTATDPHCGWCHSLQRCT--FQGDCVHS----ENLEN 461

Query: 325 GPSFRSGPAFCPT 337
                SG   CP 
Sbjct: 462 WLDISSGAKKCPG 474

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 42.1 bits (98), Expect = 2e-04
 Identities = 18/90 (20%), Positives = 35/90 (38%), Gaps = 24/90 (26%)

Query: 518 EYDRLLKEHEKVQKVVTEQGDKKDDKYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALK 577
           + DRL +E E ++K   EQ                KRL+E     +   K  +      +
Sbjct: 76  QADRLTQEPESIRKWREEQR---------------KRLQEL----DAASKVME---QEWR 113

Query: 578 NQADSVGKEYDRLLKEHEKVQKVVTEQGDK 607
            +A    +E+++  ++ E+V+K        
Sbjct: 114 EKAKKDLEEWNQ--RQSEQVEKNKINNRIA 141

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 41.7 bits (97), Expect = 2e-04
 Identities = 15/80 (18%), Positives = 36/80 (45%), Gaps = 9/80 (11%)

Query: 477 LEGDSDEIKRLKEK----LSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKV 532
           L  + + I++ +E+    L + +   K  +      + +A    +E+++  ++ E+V+K 
Sbjct: 80  LTQEPESIRKWREEQRKRLQELDAASKVME---QEWREKAKKDLEEWNQ--RQSEQVEKN 134

Query: 533 VTEQGDKKDDKYQKGDSDEI 552
                      YQ+ D+D I
Sbjct: 135 KINNRIADKAFYQQPDADII 154

>3al9_A Plexin-A2; beta-propeller, membrane protein, signaling protein; HET: NAG; 2.10A {Mus musculus} PDB: 3al8_B* Length = 539

 Score = 43.1 bits (100), Expect = 2e-04
 Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 3/40 (7%)

Query: 276 FFDCNTYSSCTQCVSSDFP-CDWCVDGHRCTHDTAENCRN 314
              C  Y++C +C+SS  P C WC   + C+    + C+ 
Sbjct: 478 VESCEQYTTCGECLSSGDPHCGWCALHNMCSR--RDKCQR 515

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens} Length = 168

 Score = 40.9 bits (95), Expect = 3e-04
 Identities = 26/130 (20%), Positives = 55/130 (42%), Gaps = 13/130 (10%)

Query: 487 LKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKKDDKYQK 546
           + + +S+ E   ++ +  +  L++      K+Y +L    E  ++      +   D   +
Sbjct: 39  MSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQAR 98

Query: 547 GDS--DEIKRLKEKLSKTEEE----------LKKEKTN-SAALKNQADSVGKEYDRLLKE 593
             S  +E+K LK  L K E E           +KEK N    L  +  S+ +  ++ + E
Sbjct: 99  ITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLEIDLNYKLKSLQQRLEQEVNE 158

Query: 594 HEKVQKVVTE 603
           H+  +  +T+
Sbjct: 159 HKVTKARLTD 168

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* Length = 371

 Score = 42.1 bits (99), Expect = 4e-04
 Identities = 23/146 (15%), Positives = 54/146 (36%), Gaps = 4/146 (2%)

Query: 463 SSKRCEIFEQCDKGLEGDSDEIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRL 522
            S++ E   +   G++      +++ E + + E+ L++ +      +    +  KE   L
Sbjct: 145 PSEKLETVAKL-LGIDEFEKCYQKMGEIVKEYEKRLERIEGELNYKEESLKARLKEMSNL 203

Query: 523 LKEHEKVQKVVTEQGDKKDDKYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADS 582
            KE EK+ K           +   G +     L+EK     ++   E  +   L      
Sbjct: 204 EKEKEKLTK---FVEYLDKVRRIFGRNGFQAYLREKYVPLIQKYLNEAFSEFDLPYSFVE 260

Query: 583 VGKEYDRLLKEHEKVQKVVTEQGDKK 608
           + K+++  +     V  +    G ++
Sbjct: 261 LTKDFEVRVHAPNGVLTIDNLSGGEQ 286

>4fww_A Macrophage-stimulating protein receptor; beta-propeller, cysteine-knot, receptor tyrosine kinase, MAC stimulating protein, N-glycosylation; HET: NAG BMA; 1.85A {Homo sapiens} Length = 527

 Score = 42.3 bits (98), Expect = 4e-04
 Identities = 33/176 (18%), Positives = 55/176 (31%), Gaps = 21/176 (11%)

Query: 323 RVGPSFRSGPAFCPTIRGTD--------------IGSQEILVPSGVKKAVKVKVHIVGQF 368
           R G  F   P+FCP   G +              + S    V         V+V  +   
Sbjct: 354 RRGLDFFQSPSFCPNPPGLEALSPNTSCRHFPLLVSSSFSRVDLFNGLLGPVQVTALYVT 413

Query: 369 IVQTRFVC-LFNIEGRFTKVNAQLLGDVIYCDPMEFTYNSSVSNINASLAVIWGGS--KP 425
            +    V  +  ++GR  +V      + +      F+   S   +   ++ +        
Sbjct: 414 RLDNVTVAHMGTMDGRILQVELVRSLNYLLY-VSNFSLGDSGQPVQRDVSRLGDHLLFAS 472

Query: 426 LDNPDNVHVNIYKCRDLANNCGLCLALPEKYGCGWCESSKRCEIFEQCDKGLEGDS 481
            D    V +    C      CG CL      GCGWC +   C   ++C    + D 
Sbjct: 473 GDQVFQVPIQGPGC-RHFLTCGRCLRAWHFMGCGWCGN--MCGQQKECPGSWQQDH 525

>4fww_A Macrophage-stimulating protein receptor; beta-propeller, cysteine-knot, receptor tyrosine kinase, MAC stimulating protein, N-glycosylation; HET: NAG BMA; 1.85A {Homo sapiens} Length = 527

 Score = 41.6 bits (96), Expect = 7e-04
 Identities = 12/59 (20%), Positives = 21/59 (35%), Gaps = 8/59 (13%)

Query: 258 KLSVRSSNGPDFVTTKFMFFDCNTYSSCTQCVSS--DFPCDWCVDGHRCTHDTAENCRN 314
            L   S +    V  +     C  + +C +C+ +     C WC  G+ C     + C  
Sbjct: 467 HLLFASGDQVFQVPIQGP--GCRHFLTCGRCLRAWHFMGCGWC--GNMCGQ--QKECPG 519

>3ol2_B Plexin-B1; beta-propeller, signalling, extacellular, signaling protein; HET: NAG BMA; 2.99A {Homo sapiens} Length = 528

 Score = 41.6 bits (96), Expect = 6e-04
 Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%)

Query: 278 DCNTYSSCTQCVSSDFP-CDWCVDGHRCTH 306
            C  +  C  C++   P C WCV   RC+ 
Sbjct: 465 SCAQHLDCASCLAHRDPYCGWCVLLGRCSR 494

>1jad_A PLC-beta, phospholipase C beta; alpha helical coiled coil, hydrolase; 2.40A {Meleagris gallopavo} SCOP: h.4.10.1 Length = 251

 Score = 40.6 bits (94), Expect = 8e-04
 Identities = 23/127 (18%), Positives = 57/127 (44%), Gaps = 12/127 (9%)

Query: 478 EGDSDEIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQG 537
           E    E+K LKE      +++KK+      L+++     +   R   +    +++  E  
Sbjct: 119 EKQIAELKALKESSESNIKDIKKK------LEAKRLDRIQVMMRSTSDKAAQERLKKE-- 170

Query: 538 DKKDDKYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKV 597
              ++ + +     IK L EK ++ +++L+++   +  L+   +  G+     + E+E+ 
Sbjct: 171 --INNSHIQEVVQTIKLLTEKTARYQQKLEEK--QAENLRAIQEKEGQLQQEAVAEYEEK 226

Query: 598 QKVVTEQ 604
            K +T +
Sbjct: 227 LKTLTVE 233

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	609
3oky_A	681	Plexin-A2; transmembrane, ligand, SEMA-domain, cel	99.95
3oky_A	681	Plexin-A2; transmembrane, ligand, SEMA-domain, cel	99.8
3ol2_B	528	Plexin-B1; beta-propeller, signalling, extacellula	97.47
3nvn_B	476	Plexin-C1; beta-propeller, signaling, viral protei	97.46
3al9_A	539	Plexin-A2; beta-propeller, membrane protein, signa	97.39
1olz_A	663	Semaphorin 4D; developmental protein, CD100, beta-	97.32
4fww_A	527	Macrophage-stimulating protein receptor; beta-prop	97.08
3oky_B	565	Putative uncharacterized protein; transmembrane, l	96.73
4gz8_A	667	Semaphorin-3A; multi-domain, cell-CELL signaling,	96.29
2uzx_B	727	Hepatocyte growth factor receptor; signaling prote	96.26
2uzx_B	727	Hepatocyte growth factor receptor; signaling prote	95.94
3nvq_A	590	Semaphorin-7A; beta-propeller, signaling, signalin	95.85
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	95.71
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	94.51
3hnw_A	138	Uncharacterized protein; coiled-coil, structural g	94.4
3u59_A	101	Tropomyosin beta chain; muscle contraction, actin,	93.85
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	93.26
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	93.11
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	93.07
4fww_A	527	Macrophage-stimulating protein receptor; beta-prop	92.74
3mq7_A	121	Bone marrow stromal antigen 2; HIV, antiviral prot	92.66
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	92.51
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	92.49
1ic2_A	81	Tropomyosin alpha chain, skeletal muscle; alpha-he	92.43
3hnw_A	138	Uncharacterized protein; coiled-coil, structural g	92.21
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	92.09
2no2_A	107	HIP-I, huntingtin-interacting protein 1; clathrin	91.95
1m1j_C	409	Fibrinogen gamma chain; coiled coils, disulfide ri	91.86
3u1c_A	101	Tropomyosin alpha-1 chain; anti-parallel coiled co	91.53
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	91.51
3u59_A	101	Tropomyosin beta chain; muscle contraction, actin,	90.85
3q8t_A	96	Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90	90.51
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	90.05
2yy0_A	53	C-MYC-binding protein; conserved hypothetical prot	90.04
3al9_A	539	Plexin-A2; beta-propeller, membrane protein, signa	89.37
3u1c_A	101	Tropomyosin alpha-1 chain; anti-parallel coiled co	89.34
2jee_A	81	YIIU; FTSZ, septum, coiled-coil, cell division, ce	89.33
3ol1_A	119	Vimentin; structural genomics, PSI-2, protein stru	88.88
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	88.03
3a7p_A	152	Autophagy protein 16; coiled-coil, coiled coil, cy	88.02
2cxk_A	95	Camta1, calmodulin binding transcription activator	86.82
3nvn_B	476	Plexin-C1; beta-propeller, signaling, viral protei	86.46
3ol2_B	528	Plexin-B1; beta-propeller, signalling, extacellula	86.28
3mq9_A	471	Bone marrow stromal antigen 2 fused to maltose-BI	84.61
3a7o_A	75	Autophagy protein 16; coiled-coil, coiled coil, cy	84.31
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	84.17
1olz_A	663	Semaphorin 4D; developmental protein, CD100, beta-	83.19
2v4h_A	110	NF-kappa-B essential modulator; transcription, met	82.38
3hhm_B	373	NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidil	82.38
4h22_A	103	Leucine-rich repeat flightless-interacting protei;	82.3
2fxo_A	129	Myosin heavy chain, cardiac muscle beta isoform; c	82.17
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	81.73
3ghg_A	562	Fibrinogen alpha chain; triple-stranded coiled coi	81.44
2efr_A	155	General control protein GCN4 and tropomyosin 1 Al;	81.37
3q8t_A	96	Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90	81.21
3qh9_A	81	Liprin-beta-2; coiled-coil, dimerization, structur	80.29

>3oky_A Plexin-A2; transmembrane, ligand, SEMA-domain, cell-CELL signalling, SI protein; HET: NAG; 2.19A {Mus musculus} PDB: 3okt_A* 4gza_A

Probab=99.95  E-value=1.1e-28  Score=279.65  Aligned_cols=145  Identities=32%  Similarity=0.600  Sum_probs=95.2

Q ss_pred             cccCccceeeecCcccccccCCceEEEecccCCCccccCC-ceEEEeecCCCCCCCceEEEecCCCccccccceecCCce
Q psy114          157 KWFGSHVWAYLTPNLLVTRSYSTRVARSFSAQNGISDLKP-RTLDLAIENLPELPGQLLCAFTIGETTVTTEAIKQTNGV  235 (609)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~n~s~~~~-~~v~l~v~~lP~L~~~~~C~F~~~~~~~~~~a~~~~~~v  235 (609)
                      ++.+.++|.+  +       ..+|++|+ +.|+|+||++. ++|.|.|++||.|+++|+|.||++..   ++|.+.+++|
T Consensus       514 ~~~~~~~~~~--~-------~~qC~~i~-~~P~~~s~~~~~~~v~l~v~~lP~l~~~~~C~fg~~~~---~~a~~~~~~v  580 (681)
T 3oky_A          514 RAWEANRFAA--S-------ISQCMSLE-VHPNSISVSDHSRLLSLVVNDAPNLSEGIACAFGNLTE---VEGQVSGSQV  580 (681)
T ss_dssp             TTTSTTSEEC--S-------GGGCCEEE-EESSEEETTSCSCEEEEEEETCCCCTTCEEEEETTTEE---EECEEETTEE
T ss_pred             CCcccccccc--c-------CCccceee-ecCccccccccccEEEEeccCCCCCCCCCEEEcCCccc---ccceecCCee
Confidence            4455677854  2       45899995 89999999764 57999999999999889999998632   6788888999


Q ss_pred             eecCCCCCCCCCCCCCCCeeEEEEEEEec-CCCcceeeeeeccccccCccccccccCCCCCccCCCCCccccCCCCCCCC
Q psy114          236 KCATPPTKDIPSIPVGQHNITAKLSVRSS-NGPDFVTTKFMFFDCNTYSSCTQCVSSDFPCDWCVDGHRCTHDTAENCRN  314 (609)
Q Consensus       236 ~C~sP~~~~lP~ip~g~d~v~v~L~L~~~-~~~~~as~~f~fydCs~~~~C~sCvsS~~pC~WC~~~~~CT~~~~~~C~~  314 (609)
                      .|.+|+++.+|++|+|+||++|+|+|+++ +|+.|++++|+||||+++.+|.+||+|+|||+||+++|+|||+ .+.|..
T Consensus       581 ~C~sP~~~~~p~~p~g~d~~~v~l~l~~~~~~~~~~s~~f~FYdCs~~~~C~sCvss~w~C~WC~~~h~Cth~-~~~c~~  659 (681)
T 3oky_A          581 ICISPGPKDVPVIPLDQDWFGLELQLRSKETGKIFVSTEFKFYNCSAHQLCLSCVNSAFRCHWCKYRNLCTHD-PTTCSF  659 (681)
T ss_dssp             EEECCCTTTSCCCC--CCEEEEEEEEEETTTCCEEEEEEEEEECCC----------------------------------
T ss_pred             EeCCCCHHhCCCCCCCceEEEEEEEEEeccCCCceeEEeeEEEcCccCccccccccCCcCCCccCCCceeccC-CCCCcc
Confidence            99999999999999999999999999996 6999999999999999999999999999999999999999997 467874


Q ss_pred             C
Q psy114          315 D  315 (609)
Q Consensus       315 ~  315 (609)
                      +
T Consensus       660 ~  660 (681)
T 3oky_A          660 Q  660 (681)
T ss_dssp             -
T ss_pred             c
Confidence            3

>3oky_A Plexin-A2; transmembrane, ligand, SEMA-domain, cell-CELL signalling, SI protein; HET: NAG; 2.19A {Mus musculus} PDB: 3okt_A* 4gza_A

Probab=99.80  E-value=3.6e-20  Score=210.09  Aligned_cols=178  Identities=19%  Similarity=0.447  Sum_probs=107.4

Q ss_pred             eeeeccccccCccccccccCCCC-CccCCCCCccccCCCCCCCCCceeecccccCCCCCCCCCCCCeeeccCCCCcceee
Q psy114          272 TKFMFFDCNTYSSCTQCVSSDFP-CDWCVDGHRCTHDTAENCRNDILITGVSRVGPSFRSGPAFCPTIRGTDIGSQEILV  350 (609)
Q Consensus       272 ~~f~fydCs~~~~C~sCvsS~~p-C~WC~~~~~CT~~~~~~C~~~~~~~~~~~~~~~~~~~~~~CP~i~~~~~~p~~~~i  350 (609)
                      .++++..|+.|.+|.+|+.++|| ||||...++|+.  .++|.+..-   .+.   | ..+..+||.|...   |  ..+
T Consensus       473 ~qvPl~~C~~y~sC~~Cl~ArDPyCGWc~~~~~Cs~--~~~C~~~~~---~~~---~-~~~~~qC~~i~~~---P--~~~  538 (681)
T 3oky_A          473 TRVPVESCEQYTTCGECLSSGDPHCGWCALHNMCSR--RDKCQRAWE---ANR---F-AASISQCMSLEVH---P--NSI  538 (681)
T ss_dssp             EEEESCCGGGCCSHHHHTTSCCTTCEEETTTTEEEC--GGGSTTTTS---TTS---E-ECSGGGCCEEEEE---S--SEE
T ss_pred             EEEEhhhCcCCCChhHHhcCCCCCCceeCCCCeEcC--hhhccCCcc---ccc---c-cccCCccceeeec---C--ccc
Confidence            57889999999999999999999 999999999998  467975320   010   1 1234689999743   3  235


Q ss_pred             cCCc-ceeEEEEEEecccccccceeEEEEeecCceEEeeeeEeCCeEEecCCccc----cCCCcceEEEEEEEEEC-CCC
Q psy114          351 PSGV-KKAVKVKVHIVGQFIVQTRFVCLFNIEGRFTKVNAQLLGDVIYCDPMEFT----YNSSVSNINASLAVIWG-GSK  424 (609)
Q Consensus       351 p~g~-~~~i~l~~~nLp~~~~~~~y~C~f~~~g~~~~~~a~v~~~~v~C~~~~~~----~~~~~~~~~v~l~v~~~-~~~  424 (609)
                      ++.. .+.+.+.+.|||.+..  +|.|.|+.   ....+|.+.++.|.|..|...    ++.+++++.|+++++.+ ++.
T Consensus       539 s~~~~~~~v~l~v~~lP~l~~--~~~C~fg~---~~~~~a~~~~~~v~C~sP~~~~~p~~p~g~d~~~v~l~l~~~~~~~  613 (681)
T 3oky_A          539 SVSDHSRLLSLVVNDAPNLSE--GIACAFGN---LTEVEGQVSGSQVICISPGPKDVPVIPLDQDWFGLELQLRSKETGK  613 (681)
T ss_dssp             ETTSCSCEEEEEEETCCCCTT--CEEEEETT---TEEEECEEETTEEEEECCCTTTSCCCC--CCEEEEEEEEEETTTCC
T ss_pred             cccccccEEEEeccCCCCCCC--CCEEEcCC---cccccceecCCeeEeCCCCHHhCCCCCCCceEEEEEEEEEeccCCC
Confidence            5543 3478899999998753  59999973   345578888899999877543    34446889999999886 344


Q ss_pred             CCCCCCCceeeeeeccccCcccCccccCCCCcccccCCCCCccccc-cCCC
Q psy114          425 PLDNPDNVHVNIYKCRDLANNCGLCLALPEKYGCGWCESSKRCEIF-EQCD  474 (609)
Q Consensus       425 ~ids~~~l~v~LYnCs~~~~dCs~Cl~a~~~y~C~WC~~~~~C~~~-~~C~  474 (609)
                      .|.+   ..++||||++ +..|.+|  +.+.|+|.||.++|.|+++ +.|+
T Consensus       614 ~~~s---~~f~FYdCs~-~~~C~sC--vss~w~C~WC~~~h~Cth~~~~c~  658 (681)
T 3oky_A          614 IFVS---TEFKFYNCSA-HQLCLSC--VNSAFRCHWCKYRNLCTHDPTTCS  658 (681)
T ss_dssp             EEEE---EEEEEECCC-----------------------------------
T ss_pred             ceeE---EeeEEEcCcc-Ccccccc--ccCCcCCCccCCCceeccCCCCCc
Confidence            4544   3589999997 4579999  7889999999999999998 5575

>3ol2_B Plexin-B1; beta-propeller, signalling, extacellular, signaling protein; HET: NAG BMA; 2.99A {Homo sapiens}

Probab=97.47  E-value=3.6e-05  Score=85.04  Aligned_cols=41  Identities=29%  Similarity=0.779  Sum_probs=37.0

Q ss_pred             eeeeccccccCccccccccCCCC-CccCCCCCccccCCCCCCCC
Q psy114          272 TKFMFFDCNTYSSCTQCVSSDFP-CDWCVDGHRCTHDTAENCRN  314 (609)
Q Consensus       272 ~~f~fydCs~~~~C~sCvsS~~p-C~WC~~~~~CT~~~~~~C~~  314 (609)
                      .++++..|+.|.+|.+|+.++|| |+||..+++|+.  .++|+.
T Consensus       459 ~~vpl~~C~~y~sC~~Cl~ArDPyCgW~~~~~~Cs~--~~~C~~  500 (528)
T 3ol2_B          459 LKVPVASCAQHLDCASCLAHRDPYCGWCVLLGRCSR--RSECSR  500 (528)
T ss_dssp             EEEESCCGGGCCSHHHHHHSCCTTCEEETTTTEEEC--GGGCC-
T ss_pred             EEEEhhhCcCcCcHhHHhhCCCCCCcccCCCCeecC--HhHcCC
Confidence            57889999999999999999999 999999999998  467986

>3nvn_B Plexin-C1; beta-propeller, signaling, viral protein-signaling protein C; HET: NDG NAG; 2.26A {Homo sapiens} PDB: 3nvq_B*

Probab=97.46  E-value=2.2e-05  Score=84.52  Aligned_cols=42  Identities=31%  Similarity=0.909  Sum_probs=37.9

Q ss_pred             eeeeccccccCccccccccCCCC-CccCCCCCccccCCCCCCCCC
Q psy114          272 TKFMFFDCNTYSSCTQCVSSDFP-CDWCVDGHRCTHDTAENCRND  315 (609)
Q Consensus       272 ~~f~fydCs~~~~C~sCvsS~~p-C~WC~~~~~CT~~~~~~C~~~  315 (609)
                      .++++..|..|.+|..|+.++|| |+||...++|+.  .++|...
T Consensus       414 ~qVPl~~C~~y~sC~~Cl~ArDPYCGW~~~~~~Csr--~~eC~rs  456 (476)
T 3nvn_B          414 RRIRVANCNKHKSCSECLTATDPHCGWCHSLQRCTF--QGDCVHS  456 (476)
T ss_dssp             EEEESCCCTTCCSHHHHHTTCCTTEEEETTTTEEEE--GGGSCCC
T ss_pred             EEEEhhhCcCCCchhHHhhCCCCCCcccCCCCccCC--HhhccCc
Confidence            57889999999999999999999 999999999998  4679753

>3al9_A Plexin-A2; beta-propeller, membrane protein, signaling protein; HET: NAG; 2.10A {Mus musculus} PDB: 3al8_B*

Probab=97.39  E-value=2.6e-05  Score=86.65  Aligned_cols=41  Identities=32%  Similarity=0.951  Sum_probs=37.6

Q ss_pred             eeeeccccccCccccccccCCCC-CccCCCCCccccCCCCCCCC
Q psy114          272 TKFMFFDCNTYSSCTQCVSSDFP-CDWCVDGHRCTHDTAENCRN  314 (609)
Q Consensus       272 ~~f~fydCs~~~~C~sCvsS~~p-C~WC~~~~~CT~~~~~~C~~  314 (609)
                      .++++..|+.|.+|.+|+.++|| ||||..+++|+.  .++|++
T Consensus       474 ~kvpl~~C~~y~sC~~Cl~arDPyCgWc~~~~~C~~--~~~C~~  515 (539)
T 3al9_A          474 TRVPVESCEQYTTCGECLSSGDPHCGWCALHNMCSR--RDKCQR  515 (539)
T ss_dssp             EEEESCCGGGCCSHHHHTTSCCTTCEEEGGGTEEEC--GGGSTT
T ss_pred             ceeehhhCcCcCCHHHHhcCCCCCCceecCCCceec--hhhcCC
Confidence            57899999999999999999999 999999999998  467975

>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI domain, IG-like domain, extracellular receptor, neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4 b.69.12.1 g.16.2.1 PDB: 3ol2_A*

Probab=97.32  E-value=7.1e-05  Score=85.16  Aligned_cols=41  Identities=20%  Similarity=0.506  Sum_probs=37.0

Q ss_pred             eeeeccccccCccccccccCCCC-CccCCCCCccccCCCCCCCC
Q psy114          272 TKFMFFDCNTYSSCTQCVSSDFP-CDWCVDGHRCTHDTAENCRN  314 (609)
Q Consensus       272 ~~f~fydCs~~~~C~sCvsS~~p-C~WC~~~~~CT~~~~~~C~~  314 (609)
                      .++++..|+.|.+|.+|+.++|| |+||...++|+..  ..|..
T Consensus       475 ~~vpl~~C~~y~sC~~Cl~arDPyCgW~~~~~~C~~~--~~c~~  516 (663)
T 1olz_A          475 VQAPLAFCGKHGTCEDCVLARDPYCAWSPPTATCVAL--HQTES  516 (663)
T ss_dssp             EEEESCCGGGCCSHHHHHHTTCTTEEEETTTTEEEET--TTCCT
T ss_pred             EEEEchhCCCCCCHHHHhcCCCCCccccCCCCceeCc--ccCCC
Confidence            57899999999999999999999 9999999999983  56864

>4fww_A Macrophage-stimulating protein receptor; beta-propeller, cysteine-knot, receptor tyrosine kinase, MAC stimulating protein, N-glycosylation; HET: NAG BMA; 1.85A {Homo sapiens}

Probab=97.08  E-value=0.00014  Score=80.77  Aligned_cols=38  Identities=24%  Similarity=0.854  Sum_probs=32.4

Q ss_pred             eeec--cccccCccccccccCCCC--CccCCCCCccccCCCCCCCC
Q psy114          273 KFMF--FDCNTYSSCTQCVSSDFP--CDWCVDGHRCTHDTAENCRN  314 (609)
Q Consensus       273 ~f~f--ydCs~~~~C~sCvsS~~p--C~WC~~~~~CT~~~~~~C~~  314 (609)
                      ++++  .+|+.|.+|.+|+.++||  ||||  .++||+  .++|++
T Consensus       478 ~vpv~~~~C~~y~sC~~Cl~a~DPy~CgWc--~~~Ct~--~~~C~~  519 (527)
T 4fww_A          478 QVPIQGPGCRHFLTCGRCLRAWHFMGCGWC--GNMCGQ--QKECPG  519 (527)
T ss_dssp             EEETTCSCGGGCCSHHHHHHSCGGGCCEEC--SSSEEC--GGGSTT
T ss_pred             EEeccccCCCCCCCHHHHhcCCCCCcCcCC--CCEeeC--hhhCcC
Confidence            4555  489999999999999998  9999  689998  478974

>3oky_B Putative uncharacterized protein; transmembrane, ligand, SEMA-domain, cell-CELL signalling, SI protein; HET: NAG; 2.19A {Mus musculus} PDB: 3okw_A* 3afc_A* 3al8_A*

Probab=96.73  E-value=0.00058  Score=75.73  Aligned_cols=46  Identities=22%  Similarity=0.520  Sum_probs=38.1

Q ss_pred             eeeeccccccCcccc-ccccCCCC-CccCCCCCccccCCCCCCCCCceee
Q psy114          272 TKFMFFDCNTYSSCT-QCVSSDFP-CDWCVDGHRCTHDTAENCRNDILIT  319 (609)
Q Consensus       272 ~~f~fydCs~~~~C~-sCvsS~~p-C~WC~~~~~CT~~~~~~C~~~~~~~  319 (609)
                      .++++..|+.|.+|. +|+.++|| |+||...++|+..  ..|....|..
T Consensus       493 ~qVPl~~C~~y~sC~~~Cl~ArDPYCGW~~~~~~C~~~--~~~~~~~~~Q  540 (565)
T 3oky_B          493 IKVPLGRCERHGKCKKTCIASRDPYCGWVRESGSCAHL--SPLSRLTFEQ  540 (565)
T ss_dssp             EEEESCCCGGGTTCHHHHHHTCCTTEEEETTTTEEEEC--CTTCCSCEEC
T ss_pred             EEeehhhCcCcccchhhhhhcCCCCCcccCCCCceeec--cCCCCCceee
Confidence            578999999999999 89999999 9999999999973  4465444433

>4gz8_A Semaphorin-3A; multi-domain, cell-CELL signaling, plexin, glycosilate extracellular, signaling protein; HET: NAG BMA MAN; 3.30A {Mus musculus}

Probab=96.29  E-value=0.00093  Score=75.77  Aligned_cols=34  Identities=24%  Similarity=0.802  Sum_probs=30.2

Q ss_pred             eeeeccccccC-ccccccccCCCC-CccCCCCCccccC
Q psy114          272 TKFMFFDCNTY-SSCTQCVSSDFP-CDWCVDGHRCTHD  307 (609)
Q Consensus       272 ~~f~fydCs~~-~~C~sCvsS~~p-C~WC~~~~~CT~~  307 (609)
                      .++|+.+|+.| .+|.+|+.++|| ||||.  ++|++-
T Consensus       493 ~kVPl~~C~~y~~sC~~Cl~ArDPYCGW~~--~~Csr~  528 (667)
T 4gz8_A          493 AQLPLHRCDIYGKACAECCLARDPYCAWDG--SSCSRY  528 (667)
T ss_dssp             EEEESCCGGGSCSSHHHHHHTCCTTEECCS--SSCEEC
T ss_pred             EEEEhhhccCccccHHHHhcCCCCCCCCcc--CcCeeE
Confidence            47899999998 689999999999 99994  889863

>2uzx_B Hepatocyte growth factor receptor; signaling protein/receptor, leucine rich repeat, receptor ectodomain, signaling protein, ATP-binding; 2.8A {Homo sapiens} PDB: 2uzy_B 1shy_B 1ssl_A

Probab=96.26  E-value=0.0023  Score=73.49  Aligned_cols=81  Identities=23%  Similarity=0.553  Sum_probs=53.9

Q ss_pred             CCcceeeeeeccccccCccccccccC-CCC-CccCCCCCccccCCCCCCCCCceeecccccCCCCCCCCCCC-CeeeccC
Q psy114          266 GPDFVTTKFMFFDCNTYSSCTQCVSS-DFP-CDWCVDGHRCTHDTAENCRNDILITGVSRVGPSFRSGPAFC-PTIRGTD  342 (609)
Q Consensus       266 ~~~~as~~f~fydCs~~~~C~sCvsS-~~p-C~WC~~~~~CT~~~~~~C~~~~~~~~~~~~~~~~~~~~~~C-P~i~~~~  342 (609)
                      +..++...+.+|+|..+.+|..|+.+ ++| |+||.  +.|+.  .+.|..+.|.             ...| |.|....
T Consensus       486 ~~~v~~vpl~~~~C~~~~~C~~Cl~a~~~p~C~W~~--~~C~~--~~~C~~~~W~-------------~~~~~P~ItsI~  548 (727)
T 2uzx_B          486 GKKITKIPLNGLGCRHFQSCSQCLSAPPFVQCGWCH--DKCVR--SEECLSGTWT-------------QQICLPAIYKVF  548 (727)
T ss_dssp             TTEEEEEETTCSCSTTCCSHHHHHHSCGGGCEEECS--SCEEE--STTCSSSCCB-------------SSCCCCEEEEEE
T ss_pred             CCeEEEecCCccCCCcCCchhhHhcCCCCccccccc--cCccc--cccCCccccc-------------cceeCCEEeccC
Confidence            34455555566899999999999999 477 99996  89997  3678644331             1234 4554432


Q ss_pred             CCCcceeecCCcceeEEEEEEeccc
Q psy114          343 IGSQEILVPSGVKKAVKVKVHIVGQ  367 (609)
Q Consensus       343 ~~p~~~~ip~g~~~~i~l~~~nLp~  367 (609)
                        |  ..-|..--+.|++.+.|+..
T Consensus       549 --P--~~Gp~~GGT~vTI~G~nf~~  569 (727)
T 2uzx_B          549 --P--NSAPLEGGTRLTICGWDFGF  569 (727)
T ss_dssp             --S--SBCCSSCCCEEEEEEECCCE
T ss_pred             --C--CcccCCCCEEEEEEEecCCC
Confidence              2  11233334689999999974

>2uzx_B Hepatocyte growth factor receptor; signaling protein/receptor, leucine rich repeat, receptor ectodomain, signaling protein, ATP-binding; 2.8A {Homo sapiens} PDB: 2uzy_B 1shy_B 1ssl_A

Probab=95.94  E-value=0.00075  Score=77.60  Aligned_cols=52  Identities=29%  Similarity=0.638  Sum_probs=40.5

Q ss_pred             eeeeccccCcccCccccCCCCcccccCCCCCccccccCCCC----CCCCCChhhHHHhhh
Q psy114          435 NIYKCRDLANNCGLCLALPEKYGCGWCESSKRCEIFEQCDK----GLEGDSDEIKRLKEK  490 (609)
Q Consensus       435 ~LYnCs~~~~dCs~Cl~a~~~y~C~WC~~~~~C~~~~~C~~----~~~~~~~~I~~i~~~  490 (609)
                      .+|+|+. +.+|+.|+++++.+.|+||.  .+|++.++|..    +..| .|.|+.+.+.
T Consensus       495 ~~~~C~~-~~~C~~Cl~a~~~p~C~W~~--~~C~~~~~C~~~~W~~~~~-~P~ItsI~P~  550 (727)
T 2uzx_B          495 NGLGCRH-FQSCSQCLSAPPFVQCGWCH--DKCVRSEECLSGTWTQQIC-LPAIYKVFPN  550 (727)
T ss_dssp             TCSCSTT-CCSHHHHHHSCGGGCEEECS--SCEEESTTCSSSCCBSSCC-CCEEEEEESS
T ss_pred             CccCCCc-CCchhhHhcCCCCccccccc--cCccccccCCcccccccee-CCEEeccCCC
Confidence            3489997 88999999998899999997  57999999962    2234 5777766543

>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein binding; HET: NAG NDG; 2.40A {Homo sapiens}

Probab=95.85  E-value=0.0024  Score=71.16  Aligned_cols=39  Identities=26%  Similarity=0.623  Sum_probs=33.1

Q ss_pred             eeeeeccccccCc-cccccccCCCC-CccCCCCCccccCCCCCCC
Q psy114          271 TTKFMFFDCNTYS-SCTQCVSSDFP-CDWCVDGHRCTHDTAENCR  313 (609)
Q Consensus       271 s~~f~fydCs~~~-~C~sCvsS~~p-C~WC~~~~~CT~~~~~~C~  313 (609)
                      -.++++..|+.|. +|.+|+.++|| |+||  .++|+..  ..|.
T Consensus       441 V~qVPl~~C~~y~~sC~~Cl~ArDPYCGWc--~~~C~~~--~~~~  481 (590)
T 3nvq_A          441 VSQVPLDLCEVYGGGCHGCLMSRDPYCGWD--QGRCISI--YSSE  481 (590)
T ss_dssp             EEEEETTCCTTCCSHHHHHHHTCCTTEEEE--TTEEEET--TSSS
T ss_pred             EEEcchhhccccccchhHHhcCCCCCCCCc--cccceec--CCCC
Confidence            3578999999997 89999999999 9999  4999974  3464

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=95.71  E-value=0.086  Score=69.06  Aligned_cols=57  Identities=16%  Similarity=0.270  Sum_probs=50.9

Q ss_pred             ccCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy114          546 KGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQKVVT  602 (609)
Q Consensus       546 ~~~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~~  602 (609)
                      +.+++++++++++++++.++|+++++++..+.++.+.|..+|+....|.++|+.+++
T Consensus      2010 ~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~ 2066 (3245)
T 3vkg_A         2010 GPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESS 2066 (3245)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456778889999999999999999999999999999999999999999999988765

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=94.51  E-value=0.49  Score=47.10  Aligned_cols=36  Identities=8%  Similarity=0.112  Sum_probs=16.8

Q ss_pred             HhhhhhHHHHHHHHhhhhHHHHHHHhhhhHHHHHHH
Q psy114          487 LKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRL  522 (609)
Q Consensus       487 i~~~l~~li~qla~~~~~~ea~~kQa~sa~~~ak~~  522 (609)
                      +...+..|-.+++.+....++++.+.+.+....+++
T Consensus        30 lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~   65 (256)
T 3na7_A           30 KRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKN   65 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444444444444444444444

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}

Probab=94.40  E-value=0.3  Score=44.11  Aligned_cols=57  Identities=12%  Similarity=0.171  Sum_probs=42.2

Q ss_pred             ccCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy114          546 KGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQKVVT  602 (609)
Q Consensus       546 ~~~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~~  602 (609)
                      ..+..+++++++|+...+.+|..++-..+.++++.+.|.+|++.|.++..+|+..+.
T Consensus        78 ~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~  134 (138)
T 3hnw_A           78 DSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETELN  134 (138)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345566666666776666666666677888888888888888888888888887665

>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}

Probab=93.85  E-value=0.57  Score=39.87  Aligned_cols=46  Identities=11%  Similarity=0.221  Sum_probs=22.7

Q ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy114          556 KEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQKVV  601 (609)
Q Consensus       556 k~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~  601 (609)
                      +.+++....+..+.+.++.+|++...++..++|+..+....++..+
T Consensus        29 e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kL   74 (101)
T 3u59_A           29 EADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKL   74 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444444444445555555555555555555555544444433

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=93.26  E-value=0.54  Score=52.16  Aligned_cols=35  Identities=3%  Similarity=-0.005  Sum_probs=16.8

Q ss_pred             HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy114          568 KEKTNSAALKNQADSVGKEYDRLLKEHEKVQKVVT  602 (609)
Q Consensus       568 ~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~~  602 (609)
                      +-|+..+.+|++.+.+.+|-+.+..|..+|++.++
T Consensus       548 ~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~  582 (597)
T 3oja_B          548 ALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKN  582 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            33344444444455555555555555555554443

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=93.11  E-value=0.81  Score=45.51  Aligned_cols=48  Identities=19%  Similarity=0.180  Sum_probs=27.7

Q ss_pred             hhHHHhhhhhHHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHH
Q psy114          483 EIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQ  530 (609)
Q Consensus       483 ~I~~i~~~l~~li~qla~~~~~~ea~~kQa~sa~~~ak~~~~e~~~l~  530 (609)
                      .|..+.+++..|-.+++.+.+..+.+..+...+....+.+-.+...++
T Consensus        19 ~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e   66 (256)
T 3na7_A           19 EIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNE   66 (256)
T ss_dssp             HHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345555555555666666666666666666666666555555544443

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=93.07  E-value=0.13  Score=61.44  Aligned_cols=29  Identities=14%  Similarity=0.168  Sum_probs=12.7

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy114          570 KTNSAALKNQADSVGKEYDRLLKEHEKVQ  598 (609)
Q Consensus       570 ~~~~~~lkkQ~~~l~~eydrl~~e~~~l~  598 (609)
                      +.+++.++++.+.+.+|++.+.+++++++
T Consensus       990 ~~e~~~l~~~~~~~~ke~~~lee~~~~~~ 1018 (1080)
T 2dfs_A          990 QEEIAKLRKELHQTQTEKKTIEEWADKYK 1018 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444444444444433

>4fww_A Macrophage-stimulating protein receptor; beta-propeller, cysteine-knot, receptor tyrosine kinase, MAC stimulating protein, N-glycosylation; HET: NAG BMA; 1.85A {Homo sapiens}

Probab=92.74  E-value=0.022  Score=62.93  Aligned_cols=35  Identities=37%  Similarity=0.930  Sum_probs=28.5

Q ss_pred             eeccccCcccCccccCCCCcccccCCCCCccccccCCC
Q psy114          437 YKCRDLANNCGLCLALPEKYGCGWCESSKRCEIFEQCD  474 (609)
Q Consensus       437 YnCs~~~~dCs~Cl~a~~~y~C~WC~~~~~C~~~~~C~  474 (609)
                      .+|+. ..+|+.|+.|...|.|+||.  ++|+.++.|+
T Consensus       484 ~~C~~-y~sC~~Cl~a~DPy~CgWc~--~~Ct~~~~C~  518 (527)
T 4fww_A          484 PGCRH-FLTCGRCLRAWHFMGCGWCG--NMCGQQKECP  518 (527)
T ss_dssp             SCGGG-CCSHHHHHHSCGGGCCEECS--SSEECGGGST
T ss_pred             cCCCC-CCCHHHHhcCCCCCcCcCCC--CEeeChhhCc
Confidence            57985 67999999776668999994  5799988885

>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A

Probab=92.66  E-value=1.5  Score=37.73  Aligned_cols=73  Identities=11%  Similarity=0.252  Sum_probs=44.8

Q ss_pred             HHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhcCCCcchhhcccCHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q psy114          496 EELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKKDDKYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAA  575 (609)
Q Consensus       496 ~qla~~~~~~ea~~kQa~sa~~~ak~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~e~~~lk~~l~~~~~~l~~~~~~~~~  575 (609)
                      .||.......-.-+.||.+-|.+...+++.=++.+..               -.+++++|+.|++.+..+|.++..+++-
T Consensus        32 ~qLTqAQe~l~~~eaQAaTCNqTV~tL~~SL~~ekaq---------------~q~~vqeLqgEI~~Lnq~Lq~a~ae~er   96 (121)
T 3mq7_A           32 QELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQ---------------GQKKVEELEGEITTLNHKLQDASAEVER   96 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555555555556677888888777766433221111               0445777777777777777777777777


Q ss_pred             HHHHHHHH
Q psy114          576 LKNQADSV  583 (609)
Q Consensus       576 lkkQ~~~l  583 (609)
                      |+++.+-|
T Consensus        97 lr~~~~~~  104 (121)
T 3mq7_A           97 LRRENQVL  104 (121)
T ss_dssp             HHHHHHHH
T ss_pred             HHhhchhh
Confidence            77665544

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=92.51  E-value=0.19  Score=60.05  Aligned_cols=53  Identities=17%  Similarity=0.295  Sum_probs=21.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH----HHHHHHHHHHHHHHHHHhhhh
Q psy114          550 DEIKRLKEKLSKTEEELKKEKTNSAALKNQAD----SVGKEYDRLLKEHEKVQKVVT  602 (609)
Q Consensus       550 ~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~----~l~~eydrl~~e~~~l~~~~~  602 (609)
                      .+++.|++|+++.++++.++.+|.+++++..+    .|...-..|.+|+++|++|++
T Consensus       984 ~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~~kv~~L~~e~~~L~qq~~ 1040 (1080)
T 2dfs_A          984 NRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKE 1040 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444444444443333333333322    222333344455555554443

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=92.49  E-value=0.26  Score=54.73  Aligned_cols=37  Identities=22%  Similarity=0.210  Sum_probs=18.2

Q ss_pred             HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy114          565 ELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQKVV  601 (609)
Q Consensus       565 ~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~  601 (609)
                      ++++.+++++.|+++.+...+...++.+|.+++..++
T Consensus       538 ~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~  574 (597)
T 3oja_B          538 ETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKV  574 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence            3333344455555555555555555555555554433

>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1

Probab=92.43  E-value=0.47  Score=38.69  Aligned_cols=57  Identities=16%  Similarity=0.189  Sum_probs=47.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC
Q psy114          549 SDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQKVVTEQG  605 (609)
Q Consensus       549 ~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~~~~~  605 (609)
                      ....+.++.+++...+...+++.++.+|++....+..++|+..+.....+..|....
T Consensus        19 ~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLeeae   75 (81)
T 1ic2_A           19 LDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLELAD   75 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHG
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345566777788888888888999999999999999999999999999998887543

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}

Probab=92.21  E-value=0.35  Score=43.63  Aligned_cols=54  Identities=24%  Similarity=0.241  Sum_probs=34.1

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy114          548 DSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQKVV  601 (609)
Q Consensus       548 ~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~  601 (609)
                      ++.+.++|+.++++.++++.....|+..++.+.+.+.+|+..|.+|++.|+.++
T Consensus        73 ~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~  126 (138)
T 3hnw_A           73 AKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNI  126 (138)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            355666666666666666666666666666666666666666666666666554

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A

Probab=92.09  E-value=1.7  Score=41.92  Aligned_cols=6  Identities=0%  Similarity=0.202  Sum_probs=2.1

Q ss_pred             HHHHHh
Q psy114          496 EELKKE  501 (609)
Q Consensus       496 ~qla~~  501 (609)
                      .+++.+
T Consensus        20 ~~~~~l   25 (284)
T 1c1g_A           20 DRADEA   25 (284)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            333333

>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}

Probab=91.95  E-value=2.5  Score=36.32  Aligned_cols=95  Identities=14%  Similarity=0.174  Sum_probs=57.5

Q ss_pred             hhhHHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhcCCCcchhhcccCHHHHHHHHHHHHHHHHHHHHh
Q psy114          490 KLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKKDDKYQKGDSDEIKRLKEKLSKTEEELKKE  569 (609)
Q Consensus       490 ~l~~li~qla~~~~~~ea~~kQa~sa~~~ak~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~e~~~lk~~l~~~~~~l~~~  569 (609)
                      .+..|+|..|...++..+.+.-++.+.+..+.+-.+-+.++....        ...+.-...++.|+.+|+.+..++...
T Consensus         2 eHi~LLRK~aE~~KqL~~~~q~~~e~e~~k~eL~~~~~~~~~~~~--------~k~~eq~~~le~lk~eL~~~~~el~~l   73 (107)
T 2no2_A            2 SHADLLRKNAEVTKQVSMARQAQVDLEREKKELEDSLERISDQGQ--------RKTQEQLEVLESLKQELATSQRELQVL   73 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456788999999988888887777777777776655555442211        111222455677777777765544443


Q ss_pred             -------hhhHHHHHHHHHHHHHHHHHHHH
Q psy114          570 -------KTNSAALKNQADSVGKEYDRLLK  592 (609)
Q Consensus       570 -------~~~~~~lkkQ~~~l~~eydrl~~  592 (609)
                             +.+-..+.++..++.+|.|.|..
T Consensus        74 q~~l~~~~~~~~~l~~~~~~l~~Ek~~L~~  103 (107)
T 2no2_A           74 QGSLETSAQSEANWAAEFAELEKERDSLVS  103 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                   33334455555666666666543

>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C

Probab=91.86  E-value=1.8  Score=45.97  Aligned_cols=100  Identities=10%  Similarity=0.101  Sum_probs=64.8

Q ss_pred             HHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhcCCCcchhhcccCHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q psy114          498 LKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKKDDKYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALK  577 (609)
Q Consensus       498 la~~~~~~ea~~kQa~sa~~~ak~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~e~~~lk~~l~~~~~~l~~~~~~~~~lk  577 (609)
                      +.+.....|-+.+|+++.+.+++.|+..-...   ..+ +.+.....++...+..+++.+|+.+.+..+...+..+..|+
T Consensus        36 V~~~l~~LE~~l~elsn~ts~v~~Lvk~iq~~---~~~-~Q~~~~d~~e~~tq~skkml~~~~~~e~~~~~~~~~i~~l~  111 (409)
T 1m1j_C           36 TDGELLEIEGLLQQATNSTGSIEYLIQHIKTI---YPS-EKQTLPQSIEQLTQKSKKIIEEIIRYENTILAHENTIQQLT  111 (409)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---SCS-STTCCSSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---ccc-ccCCCCCchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence            33444445666778888888888777444332   111 11111111222255677777788777777777888899999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhh
Q psy114          578 NQADSVGKEYDRLLKEHEKVQKVV  601 (609)
Q Consensus       578 kQ~~~l~~eydrl~~e~~~l~~~~  601 (609)
                      .+.+.+....+.|.....+|....
T Consensus       112 ~~~~~~~~~i~~l~~~i~~l~~~~  135 (409)
T 1m1j_C          112 DMHIMNSNKITQLKQKIAQLESHC  135 (409)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHh
Confidence            999999888888887777777644

>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A

Probab=91.53  E-value=3.5  Score=34.95  Aligned_cols=8  Identities=25%  Similarity=0.555  Sum_probs=3.2

Q ss_pred             HHHhhhhh
Q psy114          485 KRLKEKLS  492 (609)
Q Consensus       485 ~~i~~~l~  492 (609)
                      ..|.+++.
T Consensus         5 daIKkKm~   12 (101)
T 3u1c_A            5 DAIKKKMQ   12 (101)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            33444443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=91.51  E-value=2.1  Score=46.31  Aligned_cols=54  Identities=13%  Similarity=0.170  Sum_probs=39.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy114          550 DEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQKVVTE  603 (609)
Q Consensus       550 ~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~~~  603 (609)
                      +.+++.++..++.+++..+.++|.+.++++.+.+.+|-+|+.++.+++..++++
T Consensus       414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  467 (487)
T 3oja_A          414 AIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALAS  467 (487)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHh
Confidence            444455555555555666677888888888888888888888888888777653

>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}

Probab=90.85  E-value=2.2  Score=36.20  Aligned_cols=39  Identities=8%  Similarity=0.189  Sum_probs=15.4

Q ss_pred             hHHHhhhhhHHHHHHHHhhhhHHHHHHHhhhhHHHHHHH
Q psy114          484 IKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRL  522 (609)
Q Consensus       484 I~~i~~~l~~li~qla~~~~~~ea~~kQa~sa~~~ak~~  522 (609)
                      +..|.+++..|-.+......-.+.+..+...++..+.+.
T Consensus         4 md~iKkKm~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~   42 (101)
T 3u59_A            4 MEAIKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQL   42 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            334444444333333333333333333333333333333

>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}

Probab=90.51  E-value=0.88  Score=38.37  Aligned_cols=58  Identities=12%  Similarity=0.232  Sum_probs=40.9

Q ss_pred             hhcccCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy114          543 KYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQKV  600 (609)
Q Consensus       543 ~~~~~~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~  600 (609)
                      .++..+..++++|+++-+..+.++...+.+...|..|-+.+-+||..+.-+.-.++..
T Consensus        18 ~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE   75 (96)
T 3q8t_A           18 LEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDE   75 (96)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            4456667778888888777777777777777777777777777777665555444443

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A

Probab=90.05  E-value=3.7  Score=39.42  Aligned_cols=16  Identities=13%  Similarity=0.167  Sum_probs=5.8

Q ss_pred             HHHHHHHHHHHHHHHH
Q psy114          573 SAALKNQADSVGKEYD  588 (609)
Q Consensus       573 ~~~lkkQ~~~l~~eyd  588 (609)
                      +..+..+.+.+..+++
T Consensus       239 ~~~~~~~~~~~~~~~~  254 (284)
T 1c1g_A          239 AEFAERSVTKLEKSID  254 (284)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            3333333333333333

>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}

Probab=90.04  E-value=0.42  Score=35.79  Aligned_cols=32  Identities=13%  Similarity=0.350  Sum_probs=26.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy114          571 TNSAALKNQADSVGKEYDRLLKEHEKVQKVVT  602 (609)
Q Consensus       571 ~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~~  602 (609)
                      .|+++||..-+.|..+|+.|.++|++|+.++.
T Consensus        19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~   50 (53)
T 2yy0_A           19 PEIELLRLELAEMKEKYEAIVEENKKLKAKLA   50 (53)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            57888888888888888889899998888775

>3al9_A Plexin-A2; beta-propeller, membrane protein, signaling protein; HET: NAG; 2.10A {Mus musculus} PDB: 3al8_B*

Probab=89.37  E-value=0.073  Score=58.97  Aligned_cols=41  Identities=29%  Similarity=0.873  Sum_probs=33.7

Q ss_pred             ceeeeeeccccCcccCccccCCCCcccccCCCCCccccccCCC
Q psy114          432 VHVNIYKCRDLANNCGLCLALPEKYGCGWCESSKRCEIFEQCD  474 (609)
Q Consensus       432 l~v~LYnCs~~~~dCs~Cl~a~~~y~C~WC~~~~~C~~~~~C~  474 (609)
                      .+|.+-.|+. ..+|+.|+.+.-. -|+||...++|+.+..|.
T Consensus       474 ~kvpl~~C~~-y~sC~~Cl~arDP-yCgWc~~~~~C~~~~~C~  514 (539)
T 3al9_A          474 TRVPVESCEQ-YTTCGECLSSGDP-HCGWCALHNMCSRRDKCQ  514 (539)
T ss_dssp             EEEESCCGGG-CCSHHHHTTSCCT-TCEEEGGGTEEECGGGST
T ss_pred             ceeehhhCcC-cCCHHHHhcCCCC-CCceecCCCceechhhcC
Confidence            4688889985 6799999966433 599999888999998896

>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A

Probab=89.34  E-value=3.3  Score=35.11  Aligned_cols=20  Identities=15%  Similarity=0.212  Sum_probs=8.9

Q ss_pred             HHHHHHHhhhhHHHHHHHHH
Q psy114          505 SAALKSQADSVGKEYDRLLK  524 (609)
Q Consensus       505 ~ea~~kQa~sa~~~ak~~~~  524 (609)
                      ++++||..+.....+...++
T Consensus         4 MdaIKkKm~~lk~e~e~a~d   23 (101)
T 3u1c_A            4 MDAIKKKMQMLKLDKENALD   23 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHH
Confidence            44555444444444444333

>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}

Probab=89.33  E-value=1.2  Score=36.14  Aligned_cols=51  Identities=20%  Similarity=0.178  Sum_probs=35.9

Q ss_pred             cccCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy114          545 QKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQKVVT  602 (609)
Q Consensus       545 ~~~~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~~  602 (609)
                      +..+.-|+++||.+-..       ...+.+.++...+.|..|..+|.+|++.-+.++.
T Consensus        22 I~lLqmEieELKekN~~-------L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~   72 (81)
T 2jee_A           22 ITLLQMEIEELKEKNNS-------LSQEVQNAQHQREELERENNHLKEQQNGWQERLQ   72 (81)
T ss_dssp             HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH-------HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444455555554444       4457888888888899999999999988887765

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=88.03  E-value=2.8  Score=55.28  Aligned_cols=34  Identities=21%  Similarity=0.221  Sum_probs=18.5

Q ss_pred             HHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHH
Q psy114          494 TEEELKKEKTNSAALKSQADSVGKEYDRLLKEHE  527 (609)
Q Consensus       494 li~qla~~~~~~ea~~kQa~sa~~~ak~~~~e~~  527 (609)
                      --.+.+.|++..++.+.+-+.++++|++.|++-.
T Consensus      1932 t~~~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i~ 1965 (3245)
T 3vkg_A         1932 TEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMV 1965 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344555555555555555556666665555443

>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}

Probab=88.02  E-value=2.6  Score=38.26  Aligned_cols=54  Identities=20%  Similarity=0.295  Sum_probs=37.0

Q ss_pred             cccCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy114          545 QKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQ  598 (609)
Q Consensus       545 ~~~~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~  598 (609)
                      ...+..++..|+.+++++.+.+..-..|+.+|+-|...+...-.+|-+||.+|=
T Consensus        77 l~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV  130 (152)
T 3a7p_A           77 LKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLV  130 (152)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344566677777777777777777777777777777776666666666666653

>2cxk_A Camta1, calmodulin binding transcription activator 1; structural genomics, TIG/IPT domain, NPPSFA; 1.85A {Homo sapiens} SCOP: b.1.18.1

Probab=86.82  E-value=0.46  Score=40.02  Aligned_cols=59  Identities=10%  Similarity=-0.022  Sum_probs=42.7

Q ss_pred             CceEEEecccCCCccccCCceEEEeecCCCCCCCceEEEecCCCcccccccee-cCCceeecCCC
Q psy114          178 STRVARSFSAQNGISDLKPRTLDLAIENLPELPGQLLCAFTIGETTVTTEAIK-QTNGVKCATPP  241 (609)
Q Consensus       178 ~~~~~~~~~~P~n~s~~~~~~v~l~v~~lP~L~~~~~C~F~~~~~~~~~~a~~-~~~~v~C~sP~  241 (609)
                      +.-+.|.++.|..=.....+.|.|+=.+|. .+..++|.||+..    .++.+ +.+.+.|.+|+
T Consensus         4 ~~~~~Itd~sP~~gp~sGGTkv~I~G~~L~-~gs~~~~~fG~~~----vpa~~~s~~vl~C~tPp   63 (95)
T 2cxk_A            4 GSSGMVTDYSPEWSYPEGGVKVLITGPWQE-ASNNYSCLFDQIS----VPASLIQPGVLRCYCPA   63 (95)
T ss_dssp             -CCSCCCEEECSEECTTCCCEEEEESSCCC-CSSCEEEEETTEE----EECEEEETTEEEEECCC
T ss_pred             CCcEEEEEECCCcccCCCCEEEEEEeECCC-CCccEEEEECCEE----EeEEEeECCEEEEEecC
Confidence            345778899997766676678887765554 3457999999753    56665 56678999886

>3nvn_B Plexin-C1; beta-propeller, signaling, viral protein-signaling protein C; HET: NDG NAG; 2.26A {Homo sapiens} PDB: 3nvq_B*

Probab=86.46  E-value=0.18  Score=54.34  Aligned_cols=51  Identities=24%  Similarity=0.696  Sum_probs=36.9

Q ss_pred             ceeeeeeccccCcccCccccCCCCcccccCCCCCccccccCCCCCCCCCChhhH
Q psy114          432 VHVNIYKCRDLANNCGLCLALPEKYGCGWCESSKRCEIFEQCDKGLEGDSDEIK  485 (609)
Q Consensus       432 l~v~LYnCs~~~~dCs~Cl~a~~~y~C~WC~~~~~C~~~~~C~~~~~~~~~~I~  485 (609)
                      .+|.+-.|.. ..+|..|+.+...| |+||...++|+....|....+ +..|+.
T Consensus       414 ~qVPl~~C~~-y~sC~~Cl~ArDPY-CGW~~~~~~Csr~~eC~rs~~-~~~Wl~  464 (476)
T 3nvn_B          414 RRIRVANCNK-HKSCSECLTATDPH-CGWCHSLQRCTFQGDCVHSEN-LENWLD  464 (476)
T ss_dssp             EEEESCCCTT-CCSHHHHHTTCCTT-EEEETTTTEEEEGGGSCCCSS-CCCEEC
T ss_pred             EEEEhhhCcC-CCchhHHhhCCCCC-CcccCCCCccCCHhhccCccc-cccccc
Confidence            4577889975 67899998654334 999998889999999963211 334653

>3ol2_B Plexin-B1; beta-propeller, signalling, extacellular, signaling protein; HET: NAG BMA; 2.99A {Homo sapiens}

Probab=86.28  E-value=0.16  Score=55.88  Aligned_cols=53  Identities=30%  Similarity=0.779  Sum_probs=37.5

Q ss_pred             ceeeeeeccccCcccCccccCCCCcccccCCCCCccccccCCCCCCCCCChhhHHH
Q psy114          432 VHVNIYKCRDLANNCGLCLALPEKYGCGWCESSKRCEIFEQCDKGLEGDSDEIKRL  487 (609)
Q Consensus       432 l~v~LYnCs~~~~dCs~Cl~a~~~y~C~WC~~~~~C~~~~~C~~~~~~~~~~I~~i  487 (609)
                      .+|.+-.|+. ..+|+.|+.|...| |+||...++|+....|.... -+..|+-++
T Consensus       459 ~~vpl~~C~~-y~sC~~Cl~ArDPy-CgW~~~~~~Cs~~~~C~~~~-~~~~wl~s~  511 (528)
T 3ol2_B          459 LKVPVASCAQ-HLDCASCLAHRDPY-CGWCVLLGRCSRRSECSRGQ-GPEQWLWSF  511 (528)
T ss_dssp             EEEESCCGGG-CCSHHHHHHSCCTT-CEEETTTTEEECGGGCC-----CCCEEETT
T ss_pred             EEEEhhhCcC-cCcHhHHhhCCCCC-CcccCCCCeecCHhHcCCCC-ccchhhccc
Confidence            4678889985 56899998664445 99999888999999997221 134465443

>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}

Probab=84.61  E-value=3.6  Score=44.10  Aligned_cols=69  Identities=12%  Similarity=0.254  Sum_probs=34.9

Q ss_pred             HHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhcCCCcchhhcccCHHHHHHHHHHHHHHHHHHHHhhhhH
Q psy114          494 TEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKKDDKYQKGDSDEIKRLKEKLSKTEEELKKEKTNS  573 (609)
Q Consensus       494 li~qla~~~~~~ea~~kQa~sa~~~ak~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~e~~~lk~~l~~~~~~l~~~~~~~  573 (609)
                      |.++|...+++-..+.+||.++|.+--.+|+.-++-+.               .-.+.+++|+.|+++...+|+.+++++
T Consensus       402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~  466 (471)
T 3mq9_A          402 LQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKA---------------QGQKKVEELEGEITTLNHKLQDASAEV  466 (471)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33445555556666666666666655555533221100               011356666666666655555555555


Q ss_pred             HHHH
Q psy114          574 AALK  577 (609)
Q Consensus       574 ~~lk  577 (609)
                      +.+|
T Consensus       467 ~~~~  470 (471)
T 3mq9_A          467 ERLR  470 (471)
T ss_dssp             HHHH
T ss_pred             HHhc
Confidence            5443

>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}

Probab=84.31  E-value=3.9  Score=31.96  Aligned_cols=55  Identities=16%  Similarity=0.197  Sum_probs=41.0

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy114          548 DSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQKVVT  602 (609)
Q Consensus       548 ~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~~  602 (609)
                      +..-++.|+++|+.++.+....+..+.-=-|-+|.|+.|.=.|--|++=||.+++
T Consensus        16 ~~~~l~~Lr~eL~~Ke~eI~~L~e~i~lk~kd~ErLNDEiislNIENNlL~~rl~   70 (75)
T 3a7o_A           16 LLNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNDELISGTIENNVLQQKLS   70 (75)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHhhHHHHHhHHHHHHHHHHHH
Confidence            3446778888888888877776554443345688888888888888888888876

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=84.17  E-value=15  Score=33.95  Aligned_cols=122  Identities=15%  Similarity=0.237  Sum_probs=69.4

Q ss_pred             ChhhHHHhhhhhHHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhcC--CCc------------------
Q psy114          481 SDEIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQG--DKK------------------  540 (609)
Q Consensus       481 ~~~I~~i~~~l~~li~qla~~~~~~ea~~kQa~sa~~~ak~~~~e~~~l~~~~~~~~--~~~------------------  540 (609)
                      ...|+.+.+.|..+-..|+.+..+.+-++||..-...++..+-..+..|+.....-.  .+.                  
T Consensus         5 neKi~~LekQL~E~n~kLk~EsE~~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~   84 (168)
T 3o0z_A            5 NEKLSQLQKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRD   84 (168)
T ss_dssp             -----CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345667777777777777777777777777666555554443333322222110000  000                  


Q ss_pred             ---chhhcccCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH----HHHHHHHhhhh
Q psy114          541 ---DDKYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLL----KEHEKVQKVVT  602 (609)
Q Consensus       541 ---~~~~~~~~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~----~e~~~l~~~~~  602 (609)
                         ..+.+..+.+.+.-|..|++.....+.+++.|.-.|....-.|-||+.-+-    =|...+|+.++
T Consensus        85 r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~eid~~~eLKalQ~~~e  153 (168)
T 3o0z_A           85 RGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLEIDLNYKLKSLQQRLE  153 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence               012234556667777777777777777777777777777777777777775    34666666554

>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI domain, IG-like domain, extracellular receptor, neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4 b.69.12.1 g.16.2.1 PDB: 3ol2_A*

Probab=83.19  E-value=0.26  Score=55.89  Aligned_cols=41  Identities=22%  Similarity=0.667  Sum_probs=33.3

Q ss_pred             ceeeeeeccccCcccCccccCCCCcccccCCCCCccccccCCC
Q psy114          432 VHVNIYKCRDLANNCGLCLALPEKYGCGWCESSKRCEIFEQCD  474 (609)
Q Consensus       432 l~v~LYnCs~~~~dCs~Cl~a~~~y~C~WC~~~~~C~~~~~C~  474 (609)
                      .+|.+-.|+. ..+|+.|+.+.-.| |+||...++|+....|.
T Consensus       475 ~~vpl~~C~~-y~sC~~Cl~arDPy-CgW~~~~~~C~~~~~c~  515 (663)
T 1olz_A          475 VQAPLAFCGK-HGTCEDCVLARDPY-CAWSPPTATCVALHQTE  515 (663)
T ss_dssp             EEEESCCGGG-CCSHHHHHHTTCTT-EEEETTTTEEEETTTCC
T ss_pred             EEEEchhCCC-CCCHHHHhcCCCCC-ccccCCCCceeCcccCC
Confidence            5688889984 67899998664445 99999888999888784

>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}

Probab=82.38  E-value=3.4  Score=35.33  Aligned_cols=10  Identities=20%  Similarity=0.650  Sum_probs=5.9

Q ss_pred             hhHHHhhhhh
Q psy114          483 EIKRLKEKLS  492 (609)
Q Consensus       483 ~I~~i~~~l~  492 (609)
                      .|..+..+|.
T Consensus        25 ei~~L~~~L~   34 (110)
T 2v4h_A           25 QLEDLRQQLQ   34 (110)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            4566666665

>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A

Probab=82.38  E-value=7.7  Score=40.64  Aligned_cols=96  Identities=11%  Similarity=0.149  Sum_probs=56.4

Q ss_pred             hHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhcC-----CCcchhhcccCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q psy114          504 NSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQG-----DKKDDKYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKN  578 (609)
Q Consensus       504 ~~ea~~kQa~sa~~~ak~~~~e~~~l~~~~~~~~-----~~~~~~~~~~~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkk  578 (609)
                      +.=.+|+||-.|=.+|.+..+++..+.+...+.+     ..+...|...+..-.+.||..|++..+...+.+.++.+-+.
T Consensus       154 ~e~~~k~~a~~af~~~~~~f~~q~~~~e~~~~~~~~~~~~~~~~~e~~~~~~n~~~l~~~~~~~~~~~~~l~~~~~~~~~  233 (373)
T 3hhm_B          154 QEIQMKRTAIEAFNETIKIFEEQCQTQERYSKEYIEKFKREGNEKEIQRIMHNYDKLKSRISEIIDSRRRLEEDLKKQAA  233 (373)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcChHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445889999999999999999888776432211     11222345555666666777666655544444444443333


Q ss_pred             HHHHHHHHHHHHHHHHHHHHh
Q psy114          579 QADSVGKEYDRLLKEHEKVQK  599 (609)
Q Consensus       579 Q~~~l~~eydrl~~e~~~l~~  599 (609)
                      .--.+.++.+.|.-|.-+|.+
T Consensus       234 ~~~~~~~~~~~lkp~l~ql~k  254 (373)
T 3hhm_B          234 EYREIDKRMNSIKPDLIQLRK  254 (373)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhccChHHHHHHH
Confidence            333455555555555555554

>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}

Probab=82.30  E-value=9.2  Score=32.33  Aligned_cols=45  Identities=11%  Similarity=0.205  Sum_probs=23.8

Q ss_pred             ccCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q psy114          546 KGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRL  590 (609)
Q Consensus       546 ~~~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl  590 (609)
                      ..|+..++++++.+....++++...+|++.+|.+...|..+++-|
T Consensus        33 dlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~l   77 (103)
T 4h22_A           33 DTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEV   77 (103)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344445555555555555555555555556665555555555444

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A

Probab=82.17  E-value=21  Score=31.41  Aligned_cols=109  Identities=12%  Similarity=0.193  Sum_probs=58.8

Q ss_pred             hhhHHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhcCCCcchhhcccCHHHHHHHHHHHHHHHHHHHHh
Q psy114          490 KLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKKDDKYQKGDSDEIKRLKEKLSKTEEELKKE  569 (609)
Q Consensus       490 ~l~~li~qla~~~~~~ea~~kQa~sa~~~ak~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~e~~~lk~~l~~~~~~l~~~  569 (609)
                      .+..+-.++..+....+...+.-........+++.+...|...+...     .+......+..+.|.+.-.++...++..
T Consensus        14 E~~~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E-----~~~l~e~EE~~~~L~~~k~eLe~~l~el   88 (129)
T 2fxo_A           14 EMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAE-----QDNLADAEERCDQLIKNKIQLEAKVKEM   88 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334444444444444444444444444555666665655544211     0100111112233333333334455566


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy114          570 KTNSAALKNQADSVGKEYDRLLKEHEKVQKVVTE  603 (609)
Q Consensus       570 ~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~~~  603 (609)
                      +..++....+...|..+...|-++.+.|..++++
T Consensus        89 ~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led  122 (129)
T 2fxo_A           89 NKRLEDEEEMNAELTAKKRKLEDECSELKRDIDD  122 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6788888888888888888888888888887763

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=81.73  E-value=20  Score=33.75  Aligned_cols=92  Identities=14%  Similarity=0.174  Sum_probs=42.9

Q ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhcCCCcchhhcccCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q psy114          505 SAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKKDDKYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVG  584 (609)
Q Consensus       505 ~ea~~kQa~sa~~~ak~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~  584 (609)
                      .+-++.+.+-+..+..-|.+.+..|...++.. ....+..+..|...+..|+.|+...+.++..+.++..   +|...|.
T Consensus        19 ~~~~~q~~~~le~El~EFqesSrELE~ELE~e-L~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~---~~~~~Lq   94 (189)
T 2v71_A           19 SMKYKQSFQEARDELVEFQEGSRELEAELEAQ-LVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSY---KQVSVLE   94 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
Confidence            34445555566666666666666655443210 0001122344455555555555555554444433311   1244444


Q ss_pred             HHHHHHHHHHHHHHhh
Q psy114          585 KEYDRLLKEHEKVQKV  600 (609)
Q Consensus       585 ~eydrl~~e~~~l~~~  600 (609)
                      +|...|.+++..|+..
T Consensus        95 ~el~~l~~~~~~l~~~  110 (189)
T 2v71_A           95 DDLSQTRAIKEQLHKY  110 (189)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            4555555555554443

>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*

Probab=81.44  E-value=6.7  Score=42.29  Aligned_cols=36  Identities=11%  Similarity=0.159  Sum_probs=20.4

Q ss_pred             hhHHHhhhhhHHHHHHHHhhhhHHHHHHHhhhhHHH
Q psy114          483 EIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKE  518 (609)
Q Consensus       483 ~I~~i~~~l~~li~qla~~~~~~ea~~kQa~sa~~~  518 (609)
                      .|.+--+-+.+.|++|+....+.....+.+++..+.
T Consensus        54 lLdkqErDltkrINELKnqLEdlsKnsKdseqy~k~   89 (562)
T 3ghg_A           54 LIDEVNQDFTNRINKLKNSLFEYQKNNKDSHSLTTN   89 (562)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred             hHHhhcCcHHHHHHHHHHHHHHHHhhchhHHHHHHH
Confidence            344555556666666666666665555555554443

>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A

Probab=81.37  E-value=21  Score=32.56  Aligned_cols=45  Identities=27%  Similarity=0.322  Sum_probs=22.5

Q ss_pred             hhhhHHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHh
Q psy114          489 EKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVV  533 (609)
Q Consensus       489 ~~l~~li~qla~~~~~~ea~~kQa~sa~~~ak~~~~e~~~l~~~~  533 (609)
                      .++..|-.+|+.+..+.-.+.-+.+-+++--.+|-++-..|...+
T Consensus        42 ~k~~eLEeeL~~v~~nlKsLE~seekasqrEd~yEeqIk~L~~kL   86 (155)
T 2efr_A           42 GKSAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKL   86 (155)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            344445555555555555555555555554455554444444433

>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}

Probab=81.21  E-value=4.6  Score=33.92  Aligned_cols=54  Identities=9%  Similarity=0.182  Sum_probs=22.6

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy114          548 DSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQKVV  601 (609)
Q Consensus       548 ~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~  601 (609)
                      +..+++.++.+++.++.+-.+--.+..+++.|--.+..|-|.+-..+...+.++
T Consensus        37 l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q~~~~~~qL   90 (96)
T 3q8t_A           37 VAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVENQMRYAQMQL   90 (96)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444333222233444444444444444444444444444433

>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}

Probab=80.29  E-value=4.4  Score=32.66  Aligned_cols=51  Identities=22%  Similarity=0.227  Sum_probs=41.9

Q ss_pred             hhcccCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy114          543 KYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKE  593 (609)
Q Consensus       543 ~~~~~~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e  593 (609)
                      .|++.|+-.|++|+.|=-.-+++|+..+.++..|+.|.++=..|..||-++
T Consensus        26 qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~~   76 (81)
T 3qh9_A           26 QELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHSQ   76 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            556777777788877777777788888899999999999998888888655

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	609
d1shyb2	49	g.16.2.1 (B:516-564) Hepatocyte growth factor rece	1e-05
d1shyb2	49	g.16.2.1 (B:516-564) Hepatocyte growth factor rece	3e-04
d1olza3	56	g.16.2.1 (A:481-536) Semaphorin 4d {Human (Homo sa	4e-04
d1olza3	56	g.16.2.1 (A:481-536) Semaphorin 4d {Human (Homo sa	0.001

>d1shyb2 g.16.2.1 (B:516-564) Hepatocyte growth factor receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 49

class: Small proteins
fold: Trefoil/Plexin domain-like
superfamily: Plexin repeat
family: Plexin repeat
domain: Hepatocyte growth factor receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.6 bits (95), Expect = 1e-05
 Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 2/33 (6%)

Query: 444 NNCGLCLALPEKYGCGWCESSKRCEIFEQCDKG 476
            +C  CL+ P    CGWC    +C   E+C  G
Sbjct: 9   QSCSQCLSAPPFVQCGWC--HDKCVRSEECLSG 39

>d1shyb2 g.16.2.1 (B:516-564) Hepatocyte growth factor receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 49

class: Small proteins
fold: Trefoil/Plexin domain-like
superfamily: Plexin repeat
family: Plexin repeat
domain: Hepatocyte growth factor receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.8 bits (85), Expect = 3e-04
 Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 6/39 (15%)

Query: 279 CNTYSSCTQCVSSD--FPCDWCVDGHRCTHDTAENCRND 315
           C  + SC+QC+S+     C WC    +C    +E C + 
Sbjct: 5   CRHFQSCSQCLSAPPFVQCGWC--HDKCV--RSEECLSG 39

>d1olza3 g.16.2.1 (A:481-536) Semaphorin 4d {Human (Homo sapiens) [TaxId: 9606]} Length = 56

class: Small proteins
fold: Trefoil/Plexin domain-like
superfamily: Plexin repeat
family: Plexin repeat
domain: Semaphorin 4d
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.5 bits (84), Expect = 4e-04
 Identities = 8/28 (28%), Positives = 11/28 (39%), Gaps = 1/28 (3%)

Query: 279 CNTYSSCTQCVSSDFP-CDWCVDGHRCT 305
           C  + +C  CV +  P C W      C 
Sbjct: 2   CGKHGTCEDCVLARDPYCAWSPPTATCV 29

>d1olza3 g.16.2.1 (A:481-536) Semaphorin 4d {Human (Homo sapiens) [TaxId: 9606]} Length = 56

class: Small proteins
fold: Trefoil/Plexin domain-like
superfamily: Plexin repeat
family: Plexin repeat
domain: Semaphorin 4d
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.4 bits (81), Expect = 0.001
 Identities = 7/31 (22%), Positives = 11/31 (35%), Gaps = 1/31 (3%)

Query: 444 NNCGLCLALPEKYGCGWCESSKRCEIFEQCD 474
             C  C+   + Y C W   +  C    Q +
Sbjct: 6   GTCEDCVLARDPY-CAWSPPTATCVALHQTE 35

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	609
d1olza3	56	Semaphorin 4d {Human (Homo sapiens) [TaxId: 9606]}	97.56
d1shyb2	49	Hepatocyte growth factor receptor {Human (Homo sap	97.43
d1shyb2	49	Hepatocyte growth factor receptor {Human (Homo sap	97.41
d1olza3	56	Semaphorin 4d {Human (Homo sapiens) [TaxId: 9606]}	93.55
d1gs9a_	144	Apolipoprotein E {Human (Homo sapiens), E4 [TaxId:	88.91
d2cxka1	82	Calmodulin binding transcription activator 1 {Huma	88.21
d1seta1	110	Seryl-tRNA synthetase (SerRS) {Thermus thermophilu	80.73
d2efla1	288	Formin-binding protein 1, FNBP1 {Human (Homo sapie	80.01

>d1olza3 g.16.2.1 (A:481-536) Semaphorin 4d {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Trefoil/Plexin domain-like
superfamily: Plexin repeat
family: Plexin repeat
domain: Semaphorin 4d
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.56  E-value=6.8e-06  Score=61.16  Aligned_cols=34  Identities=24%  Similarity=0.688  Sum_probs=29.6

Q ss_pred             cccCccccccccCCCC-CccCCCCCccccCCCCCCCC
Q psy114          279 CNTYSSCTQCVSSDFP-CDWCVDGHRCTHDTAENCRN  314 (609)
Q Consensus       279 Cs~~~~C~sCvsS~~p-C~WC~~~~~CT~~~~~~C~~  314 (609)
                      |+.|.+|..||.++|| |+||...++|+..  .+|..
T Consensus         2 C~~~~sC~~C~~a~DPyCgW~~~~~~C~~~--~~~~~   36 (56)
T d1olza3           2 CGKHGTCEDCVLARDPYCAWSPPTATCVAL--HQTES   36 (56)
T ss_dssp             GGGCCSHHHHHHTTCTTEEEETTTTEEEET--TTCCT
T ss_pred             ccccccHHHHHcCCCCcCcccCCCCCeecC--cCCCC
Confidence            8889999999999999 9999999999973  34543

>d1shyb2 g.16.2.1 (B:516-564) Hepatocyte growth factor receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Trefoil/Plexin domain-like
superfamily: Plexin repeat
family: Plexin repeat
domain: Hepatocyte growth factor receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.43  E-value=1.1e-05  Score=57.88  Aligned_cols=36  Identities=33%  Similarity=1.006  Sum_probs=30.6

Q ss_pred             ccccCccccccccCCCC--CccCCCCCccccCCCCCCCCCce
Q psy114          278 DCNTYSSCTQCVSSDFP--CDWCVDGHRCTHDTAENCRNDIL  317 (609)
Q Consensus       278 dCs~~~~C~sCvsS~~p--C~WC~~~~~CT~~~~~~C~~~~~  317 (609)
                      .|..|++|.+|++++++  |+||  .++|+.  ..+|..+.|
T Consensus         4 ~C~~~~sC~~Cl~a~~~y~CgWC--~~rCs~--~~~c~~~~W   41 (49)
T d1shyb2           4 GCRHFQSCSQCLSAPPFVQCGWC--HDKCVR--SEECLSGTW   41 (49)
T ss_dssp             GGTTCCSHHHHHTSCGGGCCEEE--TTEEEC--GGGCCSSCC
T ss_pred             CcCCcCCHHHHHcCCCCCcCcCc--CCCccC--ccccCcccc
Confidence            58999999999999988  9999  489997  467876554

>d1shyb2 g.16.2.1 (B:516-564) Hepatocyte growth factor receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Trefoil/Plexin domain-like
superfamily: Plexin repeat
family: Plexin repeat
domain: Hepatocyte growth factor receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.41  E-value=1.5e-05  Score=57.19  Aligned_cols=33  Identities=39%  Similarity=1.065  Sum_probs=28.2

Q ss_pred             ccccCcccCccccCCCCcccccCCCCCccccccCCC
Q psy114          439 CRDLANNCGLCLALPEKYGCGWCESSKRCEIFEQCD  474 (609)
Q Consensus       439 Cs~~~~dCs~Cl~a~~~y~C~WC~~~~~C~~~~~C~  474 (609)
                      |. ...+|+.|++++..|+|+||.  ++|+++..|.
T Consensus         5 C~-~~~sC~~Cl~a~~~y~CgWC~--~rCs~~~~c~   37 (49)
T d1shyb2           5 CR-HFQSCSQCLSAPPFVQCGWCH--DKCVRSEECL   37 (49)
T ss_dssp             GT-TCCSHHHHHTSCGGGCCEEET--TEEECGGGCC
T ss_pred             cC-CcCCHHHHHcCCCCCcCcCcC--CCccCccccC
Confidence            54 356899999999999999995  6899999895

>d1olza3 g.16.2.1 (A:481-536) Semaphorin 4d {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Trefoil/Plexin domain-like
superfamily: Plexin repeat
family: Plexin repeat
domain: Semaphorin 4d
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.55  E-value=0.0048  Score=45.23  Aligned_cols=34  Identities=24%  Similarity=0.793  Sum_probs=27.3

Q ss_pred             ccccCcccCccccCCCCcccccCCCCCccccccCCC
Q psy114          439 CRDLANNCGLCLALPEKYGCGWCESSKRCEIFEQCD  474 (609)
Q Consensus       439 Cs~~~~dCs~Cl~a~~~y~C~WC~~~~~C~~~~~C~  474 (609)
                      |+. +.+|..|+.+.-.| |+||...++|+....|.
T Consensus         2 C~~-~~sC~~C~~a~DPy-CgW~~~~~~C~~~~~~~   35 (56)
T d1olza3           2 CGK-HGTCEDCVLARDPY-CAWSPPTATCVALHQTE   35 (56)
T ss_dssp             GGG-CCSHHHHHHTTCTT-EEEETTTTEEEETTTCC
T ss_pred             ccc-cccHHHHHcCCCCc-CcccCCCCCeecCcCCC
Confidence            543 56899999776668 99999999999876664

>d1gs9a_ a.24.1.1 (A:) Apolipoprotein E {Human (Homo sapiens), E4 [TaxId: 9606]}

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Apolipoprotein
family: Apolipoprotein
domain: Apolipoprotein E
species: Human (Homo sapiens), E4 [TaxId: 9606]

Probab=88.91  E-value=1.4  Score=37.53  Aligned_cols=55  Identities=16%  Similarity=0.299  Sum_probs=39.7

Q ss_pred             CHHHHHHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhh
Q psy114          548 DSDEIKRLKEKLSKTEEELKK-EKTNSAALKNQADSVGKEY-DRLLKEHEKVQKVVT  602 (609)
Q Consensus       548 ~~~e~~~lk~~l~~~~~~l~~-~~~~~~~lkkQ~~~l~~ey-drl~~e~~~l~~~~~  602 (609)
                      +..++++++.+|....++++. .+..++.+|.+......|| ++|....++|+.+|.
T Consensus        83 l~~~lee~r~kl~~~~eel~~~~~~~~ee~r~~l~p~~eel~~~l~~~~eel~~kL~  139 (144)
T d1gs9a_          83 LGADMEDVRGRLVQYRGEVQAMLGQSTEELRVRLASHLRKLRKRLLRDADDLQKRLA  139 (144)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            455566777777766666666 5777888888888877777 456666777888876

>d2cxka1 b.1.18.1 (A:872-953) Calmodulin binding transcription activator 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: NF-kappa-B/REL/DORSAL transcription factors, C-terminal domain
domain: Calmodulin binding transcription activator 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.21  E-value=0.2  Score=38.69  Aligned_cols=54  Identities=11%  Similarity=-0.002  Sum_probs=37.7

Q ss_pred             EecccCCCccccCCceEEEeecCCCCCCCceEEEecCCCcccccccee-cCCceeecCCC
Q psy114          183 RSFSAQNGISDLKPRTLDLAIENLPELPGQLLCAFTIGETTVTTEAIK-QTNGVKCATPP  241 (609)
Q Consensus       183 ~~~~~P~n~s~~~~~~v~l~v~~lP~L~~~~~C~F~~~~~~~~~~a~~-~~~~v~C~sP~  241 (609)
                      |+++.|..=+....+.|+|+=.++.+ +..+.|.||+..    .++.. ..+.+.|.+|+
T Consensus         2 It~isP~~G~~~GGt~V~I~G~~f~~-~~~~~c~fG~~~----~~~~~vs~~~i~C~tP~   56 (82)
T d2cxka1           2 VTDYSPEWSYPEGGVKVLITGPWQEA-SNNYSCLFDQIS----VPASLIQPGVLRCYCPA   56 (82)
T ss_dssp             CCEEECSEECTTCCCEEEEESSCCCC-SSCEEEEETTEE----EECEEEETTEEEEECCC
T ss_pred             EeEEcCCceeCCCCEEEEEEEccccc-cceEEEEEEeee----cceEEEeeeEEEEEcCc
Confidence            45677866666666678887667754 356999999753    45544 56779999985

>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: tRNA-binding arm
family: Seryl-tRNA synthetase (SerRS)
domain: Seryl-tRNA synthetase (SerRS)
species: Thermus thermophilus, strain hb27 [TaxId: 274]

Probab=80.73  E-value=3.6  Score=33.05  Aligned_cols=58  Identities=12%  Similarity=0.215  Sum_probs=35.5

Q ss_pred             cccCHHHHHHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy114          545 QKGDSDEIKRLKEKLSKTEEELKKE-KTNSAALKNQADSVGKEYDRLLKEHEKVQKVVT  602 (609)
Q Consensus       545 ~~~~~~e~~~lk~~l~~~~~~l~~~-~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~~  602 (609)
                      -..+..+++.|+.+-.+..++..++ ..+.+++++++..|..+...|-++...++.++.
T Consensus        37 rr~l~~~~e~l~~~rN~~sk~i~k~~~~~~~~l~~~~k~lk~~i~~le~~~~~~~~~l~   95 (110)
T d1seta1          37 VQELKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLEEALREKEARLE   95 (110)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444555566666665555555442 335567777777777777777777766666554

>d2efla1 a.238.1.4 (A:1-288) Formin-binding protein 1, FNBP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: BAR/IMD domain-like
superfamily: BAR/IMD domain-like
family: FCH domain
domain: Formin-binding protein 1, FNBP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.01  E-value=21  Score=32.30  Aligned_cols=38  Identities=5%  Similarity=0.194  Sum_probs=22.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q psy114          549 SDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKE  586 (609)
Q Consensus       549 ~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~e  586 (609)
                      ..+++|++.+++....++++++++....-.++.....+
T Consensus       166 ~~~~~K~~~k~~~~~~~~~~a~~~Y~~~v~~~n~~~~~  203 (288)
T d2efla1         166 KADVEKARQQAQIRHQMAEDSKADYSSILQKFNHEQHE  203 (288)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44566666666666666666666665544445444444