Psyllid ID: psy11529

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240----
Protein Sequence
MAEVYSFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQVLP
Secondary Structure (PSIPRED)
cccccccccccEEEEEEcccccEEEEEccccEEEEEEccccccccEEEccccccccEEEEEEEcccccEEEEccccccEEEEEEccccccEEEEEEEEEccccEEEEEEcccccEEEEEEcccEEEEEEccccccEEEEccccccccccEEEEEEcccccEEEEEEccccEEEEEcccccccccccccccccccccccEEEEEEccccccccEEEEEEcccccEEEEEEccccEEEEEcccccc
Secondary Structure Prediction (SSPRO)
ccHHHHccccccEEEEEcccccEEEEEccccEEEEEEEEccccccEEEEEEcccccEEEEEEEcccccEEEEEcccccEEEEEEcccccccccEEEEEEEcccEEEEEEcccccEEEEEcccEEEEEEEEccccccEHHHHccccccccEEEEEcccccEEEEEEccccEEEEEEEEEEcccccccccccccccccccEEEEEccccccccEEEEEEEcccccEEEEEEcccEEEEEEcccccc
Coil and Loop (DISEMBL)
maevysfginpvtthawnntrqqlaftpnnqevHLYQYEKaandwsqldvldghdlkvtgidwapntnrivtCSADRNAYVWtqnnddkkwkpTLVLLRINRAatcvkwsplenkfaagsgARLISVCYFESENDWWVAKHIKkpikstitcldwhpnnhllgcgstdFKVRVFSAYIKDiesapqstnwgskstlgNCLVelnnsssgggwihsvafskdgnklcwtshdgsinvrmsqqvlp
Flexible Loop (DISEMBL)
MAEVYSFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVtgidwapntnriVTCSADRNAYVWtqnnddkkwkpTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIesapqstnwgskSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTshdgsinvrmsqqvlp
Low Complexity Region (SEG)
MAEVYSFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQVLP
Disordered region (IsUnstruct)
***VYSFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHD*************
Disordered Region (DISOPRED)
MAEVYSFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQVL*
Disordered Region (DISEMBL)
MAEVYSFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQVLP
Disordered Region (DISPRO)
MAEVYSFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQ****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAEVYSFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQVLP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	244	2.2.26 [Sep-21-2011]
Q9R0Q6	370	Actin-related protein 2/3	yes	N/A	0.934	0.616	0.618	7e-83
Q99PD4	370	Actin-related protein 2/3	yes	N/A	0.934	0.616	0.613	2e-82
Q92747	370	Actin-related protein 2/3	yes	N/A	0.934	0.616	0.613	4e-82
Q1JP79	370	Actin-related protein 2/3	yes	N/A	0.934	0.616	0.613	5e-82
Q58CQ2	372	Actin-related protein 2/3	no	N/A	0.913	0.599	0.586	1e-78
O15143	372	Actin-related protein 2/3	no	N/A	0.913	0.599	0.586	2e-78
Q9WV32	372	Actin-related protein 2/3	no	N/A	0.913	0.599	0.586	3e-78
O88656	372	Actin-related protein 2/3	no	N/A	0.913	0.599	0.586	3e-78
P78774	377	Actin-related protein 2/3	yes	N/A	0.897	0.580	0.508	2e-63
O96622	369	Actin-related protein 2/3	yes	N/A	0.885	0.585	0.515	4e-58

>sp|Q9R0Q6|ARC1A_MOUSE Actin-related protein 2/3 complex subunit 1A OS=Mus musculus GN=Arpc1a PE=1 SV=1

 Score =  306 bits (785), Expect = 7e-83,   Method: Compositional matrix adjust.
 Identities = 144/233 (61%), Positives = 175/233 (75%), Gaps = 5/233 (2%)

Query: 4   VYSFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDW 63
           ++ F + P+T HAWN  R Q+A +PNN EVH+Y+  K  + W++   L  H+  +TGIDW
Sbjct: 3   LHQFLLEPITCHAWNRDRTQIALSPNNHEVHIYK--KNGSQWTKAHELKEHNGHITGIDW 60

Query: 64  APNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGAR 123
           AP ++RIVTC ADRNAYVW+Q   D  WKPTLV+LRINRAAT VKWSPLENKFA GSGAR
Sbjct: 61  APKSDRIVTCGADRNAYVWSQK--DGIWKPTLVILRINRAATFVKWSPLENKFAVGSGAR 118

Query: 124 LISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIES 183
           LISVCYFESENDWWV+KHIKKPI+ST+  LDWHPNN LL  GS DFK RVFSAYIK+++ 
Sbjct: 119 LISVCYFESENDWWVSKHIKKPIRSTVLSLDWHPNNVLLAAGSCDFKCRVFSAYIKEVDE 178

Query: 184 APQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINV 236
            P ST WGSK   G  + E   S + GGW+H V+FS  GN+L W SHD +++V
Sbjct: 179 KPASTPWGSKMPFGQLMSEFGGSGT-GGWVHGVSFSASGNRLAWVSHDSTVSV 230

Probably functions as component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks.
Mus musculus (taxid: 10090)

>sp|Q99PD4|ARC1A_RAT Actin-related protein 2/3 complex subunit 1A OS=Rattus norvegicus GN=Arpc1a PE=2 SV=1

 Score =  305 bits (780), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 143/233 (61%), Positives = 175/233 (75%), Gaps = 5/233 (2%)

Query: 4   VYSFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDW 63
           ++ F + P+T HAWN  R Q+A +PNN EVH+Y+  K  + W++   L  H+  +TGIDW
Sbjct: 3   LHQFLLEPITCHAWNRDRTQIALSPNNHEVHIYK--KNGSQWTKAHELKEHNGHITGIDW 60

Query: 64  APNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGAR 123
           AP ++RIVTC ADRNAYVW+Q   D  WKPTLV+LRINRAAT VKWSPLENKFA GSGAR
Sbjct: 61  APKSDRIVTCGADRNAYVWSQK--DGIWKPTLVILRINRAATFVKWSPLENKFAVGSGAR 118

Query: 124 LISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIES 183
           LISVCYFESENDWWV+KHIKKPI+ST+  LDWHPNN LL  GS DFK RVFSAYIK+++ 
Sbjct: 119 LISVCYFESENDWWVSKHIKKPIRSTVLSLDWHPNNVLLAAGSCDFKCRVFSAYIKEVDE 178

Query: 184 APQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINV 236
            P ST WGSK   G  + E   S + GGW+H V+FS  G++L W SHD +++V
Sbjct: 179 KPASTPWGSKMPFGQLMSEFGGSGT-GGWVHGVSFSASGSRLAWVSHDSTVSV 230

Probably functions as component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks.

Rattus norvegicus (taxid: 10116)

>sp|Q92747|ARC1A_HUMAN Actin-related protein 2/3 complex subunit 1A OS=Homo sapiens GN=ARPC1A PE=1 SV=2

 Score =  304 bits (778), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 143/233 (61%), Positives = 174/233 (74%), Gaps = 5/233 (2%)

Query: 4   VYSFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDW 63
           ++ F + P+T HAWN  R Q+A +PNN EVH+Y+  K  + W +   L  H+  +TGIDW
Sbjct: 3   LHQFLLEPITCHAWNRDRTQIALSPNNHEVHIYK--KNGSQWVKAHELKEHNGHITGIDW 60

Query: 64  APNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGAR 123
           AP ++RIVTC ADRNAYVW+Q   D  WKPTLV+LRINRAAT VKWSPLENKFA GSGAR
Sbjct: 61  APKSDRIVTCGADRNAYVWSQK--DGVWKPTLVILRINRAATFVKWSPLENKFAVGSGAR 118

Query: 124 LISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIES 183
           LISVCYFESENDWWV+KHIKKPI+ST+  LDWHPNN LL  GS DFK RVFSAYIK+++ 
Sbjct: 119 LISVCYFESENDWWVSKHIKKPIRSTVLSLDWHPNNVLLAAGSCDFKCRVFSAYIKEVDE 178

Query: 184 APQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINV 236
            P ST WGSK   G  + E   S + GGW+H V+FS  G++L W SHD +++V
Sbjct: 179 KPASTPWGSKMPFGQLMSEFGGSGT-GGWVHGVSFSASGSRLAWVSHDSTVSV 230

Probably functions as component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks.

Homo sapiens (taxid: 9606)

>sp|Q1JP79|ARC1A_BOVIN Actin-related protein 2/3 complex subunit 1A OS=Bos taurus GN=ARPC1A PE=2 SV=1

 Score =  304 bits (778), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 143/233 (61%), Positives = 173/233 (74%), Gaps = 5/233 (2%)

Query: 4   VYSFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDW 63
           ++ F + P+T HAWN  R Q+A +PNN EVH+Y+  K    W +   L  H+  +TGIDW
Sbjct: 3   LHQFLLEPITCHAWNRDRTQIALSPNNHEVHIYK--KNGGQWVKAHELKEHNGHITGIDW 60

Query: 64  APNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGAR 123
           AP ++RIVTC ADRNAYVW+Q   D  WKPTLV+LRINRAAT VKWSPLENKFA GSGAR
Sbjct: 61  APKSDRIVTCGADRNAYVWSQK--DGVWKPTLVILRINRAATFVKWSPLENKFAVGSGAR 118

Query: 124 LISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIES 183
           LISVCYFESENDWWV+KHIKKPI+ST+  LDWHPNN LL  GS DFK RVFSAYIK+++ 
Sbjct: 119 LISVCYFESENDWWVSKHIKKPIRSTVLSLDWHPNNVLLAAGSCDFKCRVFSAYIKEVDE 178

Query: 184 APQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINV 236
            P ST WGSK   G  + E   S + GGW+H V+FS  G++L W SHD +++V
Sbjct: 179 KPASTPWGSKMPFGQLMSEFGGSGT-GGWVHGVSFSASGSRLAWVSHDSTVSV 230

Probably functions as component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks.

Bos taurus (taxid: 9913)

>sp|Q58CQ2|ARC1B_BOVIN Actin-related protein 2/3 complex subunit 1B OS=Bos taurus GN=ARPC1B PE=1 SV=4

 Score =  292 bits (748), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 135/230 (58%), Positives = 168/230 (73%), Gaps = 7/230 (3%)

Query: 5   YSFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWA 64
           +SF + P++ HAWN  R Q+A  PNN EVH+Y  EK+ N W Q+  L  H+ +VTGIDWA
Sbjct: 4   HSFLVEPISCHAWNKDRTQIAICPNNHEVHIY--EKSGNKWVQVHELKEHNGQVTGIDWA 61

Query: 65  PNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARL 124
           P++NRIVTC  DRNAYVWT     + WKPTLV+LRINRAA CV+W+P E KFA GSG+R+
Sbjct: 62  PDSNRIVTCGTDRNAYVWTLKG--RTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRV 119

Query: 125 ISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESA 184
           IS+CYFE ENDWWV KHIKKPI+ST+  LDWHPN+ LL  GS DFK R+FSAYIK++E  
Sbjct: 120 ISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEER 179

Query: 185 PQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSI 234
           P  T WGSK   G  + E   SSS  GW+H V FS +G+++ W SHD ++
Sbjct: 180 PAPTPWGSKMPFGELMFE---SSSSCGWVHGVCFSANGSRVAWVSHDSTV 226

Functions as component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks.

Bos taurus (taxid: 9913)

>sp|O15143|ARC1B_HUMAN Actin-related protein 2/3 complex subunit 1B OS=Homo sapiens GN=ARPC1B PE=1 SV=3

 Score =  292 bits (747), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 135/230 (58%), Positives = 167/230 (72%), Gaps = 7/230 (3%)

Query: 5   YSFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWA 64
           +SF + P++ HAWN  R Q+A  PNN EVH+Y  EK+   W+++  L  H+ +VTGIDWA
Sbjct: 4   HSFLVEPISCHAWNKDRTQIAICPNNHEVHIY--EKSGAKWTKVHELKEHNGQVTGIDWA 61

Query: 65  PNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARL 124
           P +NRIVTC  DRNAYVWT     + WKPTLV+LRINRAA CV+W+P ENKFA GSG+R+
Sbjct: 62  PESNRIVTCGTDRNAYVWTLKG--RTWKPTLVILRINRAARCVRWAPNENKFAVGSGSRV 119

Query: 125 ISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESA 184
           IS+CYFE ENDWWV KHIKKPI+ST+  LDWHPNN LL  GS DFK R+FSAYIK++E  
Sbjct: 120 ISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNNVLLAAGSCDFKCRIFSAYIKEVEER 179

Query: 185 PQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSI 234
           P  T WGSK   G  + E   SSS  GW+H V FS  G+++ W SHD ++
Sbjct: 180 PAPTPWGSKMPFGELMFE---SSSSCGWVHGVCFSASGSRVAWVSHDSTV 226

Functions as component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks.

Homo sapiens (taxid: 9606)

>sp|Q9WV32|ARC1B_MOUSE Actin-related protein 2/3 complex subunit 1B OS=Mus musculus GN=Arpc1b PE=1 SV=4

 Score =  291 bits (745), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 135/230 (58%), Positives = 167/230 (72%), Gaps = 7/230 (3%)

Query: 5   YSFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWA 64
           +SF + P++ HAWN  R Q+A  PNN EVH+Y  EK+   W+++  L  H+ +VTGIDWA
Sbjct: 4   HSFLVEPISCHAWNKDRTQIAICPNNHEVHIY--EKSGAKWNKVHELKEHNGQVTGIDWA 61

Query: 65  PNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARL 124
           P +NRIVTC  DRNAYVWT     + WKPTLV+LRINRAA CV+W+P ENKFA GSG+R+
Sbjct: 62  PESNRIVTCGTDRNAYVWTLKG--RTWKPTLVILRINRAARCVRWAPNENKFAVGSGSRV 119

Query: 125 ISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESA 184
           IS+CYFE ENDWWV KHIKKPI+ST+  LDWHPNN LL  GS DFK R+FSAYIK++E  
Sbjct: 120 ISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNNVLLAAGSCDFKCRIFSAYIKEVEER 179

Query: 185 PQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSI 234
           P  T WGSK   G  + E   SSS  GW+H V FS  G+++ W SHD ++
Sbjct: 180 PAPTPWGSKMPFGELMFE---SSSSCGWVHGVCFSASGSRVAWVSHDSTV 226

Functions as component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks.

Mus musculus (taxid: 10090)

>sp|O88656|ARC1B_RAT Actin-related protein 2/3 complex subunit 1B OS=Rattus norvegicus GN=Arpc1b PE=2 SV=3

 Score =  291 bits (745), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 135/230 (58%), Positives = 167/230 (72%), Gaps = 7/230 (3%)

Query: 5   YSFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWA 64
           +SF + P++ HAWN  R Q+A  PNN EVH+Y  EK+   W+++  L  H+ +VTGIDWA
Sbjct: 4   HSFLVEPISCHAWNKDRTQIAICPNNHEVHIY--EKSGAKWNKVHELKEHNGQVTGIDWA 61

Query: 65  PNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARL 124
           P +NRIVTC  DRNAYVWT     + WKPTLV+LRINRAA CV+W+P ENKFA GSG+R+
Sbjct: 62  PESNRIVTCGTDRNAYVWTLKG--RTWKPTLVILRINRAARCVRWAPNENKFAVGSGSRV 119

Query: 125 ISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESA 184
           IS+CYFE ENDWWV KHIKKPI+ST+  LDWHPNN LL  GS DFK R+FSAYIK++E  
Sbjct: 120 ISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNNVLLAAGSCDFKCRIFSAYIKEVEER 179

Query: 185 PQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSI 234
           P  T WGSK   G  + E   SSS  GW+H V FS  G+++ W SHD ++
Sbjct: 180 PAPTPWGSKMPFGELMFE---SSSSCGWVHGVCFSAGGSRVAWVSHDSTV 226

Functions as component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks.

Rattus norvegicus (taxid: 10116)

>sp|P78774|ARPC1_SCHPO Actin-related protein 2/3 complex subunit 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=arc1 PE=1 SV=3

 Score =  242 bits (617), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 115/226 (50%), Positives = 148/226 (65%), Gaps = 7/226 (3%)

Query: 11  PVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRI 70
           P   HA+N+ R +   T    +V LY  E+  N W        HD  VT +DWAP +NRI
Sbjct: 13  PSYEHAFNSQRTEFVTTTATNQVELY--EQDGNGWKHARTFSDHDKIVTCVDWAPKSNRI 70

Query: 71  VTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYF 130
           VTCS DRNAYV+ +   D  WK TLVLLR+NRAAT V+WSP E+KFA GSGAR+ISVCYF
Sbjct: 71  VTCSQDRNAYVY-EKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYF 129

Query: 131 ESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNW 190
           E ENDWWV+KH+K+P++STI  LDWHPNN LL  G  D K  V SAY++D+++ P+++ W
Sbjct: 130 EQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVW 189

Query: 191 GSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINV 236
           GS+        E  +    GGW+H+V FS  GN L +  HD S+ +
Sbjct: 190 GSRLPFNTVCAEYPS----GGWVHAVGFSPSGNALAYAGHDSSVTI 231

Functions as component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|O96622|ARPC1_DICDI Actin-related protein 2/3 complex subunit 1 OS=Dictyostelium discoideum GN=arcA PE=1 SV=1

 Score =  224 bits (571), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 116/225 (51%), Positives = 147/225 (65%), Gaps = 9/225 (4%)

Query: 12  VTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIV 71
           +T HAWN  R ++A  PNN EVH+Y   K    W    VL  HD  VT IDWAP TNRI+
Sbjct: 13  ITAHAWNADRSRVALCPNNNEVHIYA--KQGTSWVVEHVLAEHDQLVTSIDWAPKTNRIL 70

Query: 72  TCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFE 131
           T S DRNAYVWT    D +WKP LVLLRINRAAT VKWSP ENKFA  +GA+L+ +C+FE
Sbjct: 71  TSSQDRNAYVWTFK--DGQWKPVLVLLRINRAATHVKWSPQENKFAVATGAKLVCICFFE 128

Query: 132 SENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWG 191
            E+DWW + HIKK  KST+  +DWHPNN LL   S+D+KVRVF AYIK  +    +  +G
Sbjct: 129 EEHDWWASNHIKKH-KSTVLKVDWHPNNLLLATSSSDYKVRVFDAYIKKADGRSVTRPYG 187

Query: 192 SKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINV 236
            +   G  + E +  +S   W+H++ +S  G+ L ++SHDG   V
Sbjct: 188 -EVAFGEPVFEFDQCAS---WVHALKWSPSGSTLAYSSHDGVFAV 228

Functions as component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks. Seems to contact the pointed end of the daughter actin filament. The Arp2/3 complex is involved in organizing the actin system in cell motility and chemotaxis, in phagocytosis and macropinocytosis, at late steps of endosome processing, and in mitosis. In concert with a group of other proteins, the Arp2/3 complex plays a general role in the rapid activation and adaptation of the actin system to its multiple functions.

Dictyostelium discoideum (taxid: 44689)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	244
312378281	374	hypothetical protein AND_10210 [Anophele	0.967	0.631	0.705	1e-97
157116362	373	actin-related protein 2/3 complex subuni	0.954	0.624	0.705	2e-97
58392833	374	AGAP008908-PA [Anopheles gambiae str. PE	0.967	0.631	0.688	1e-96
189235525	374	PREDICTED: similar to actin-related prot	0.954	0.622	0.705	5e-96
170047781	348	suppressor of profilin 2 [Culex quinquef	0.954	0.669	0.700	2e-95
242015804	363	conserved hypothetical protein [Pediculu	0.975	0.655	0.690	3e-95
321459170	374	hypothetical protein DAPPUDRAFT_300535 [	0.954	0.622	0.691	3e-95
195433597	378	GK15121 [Drosophila willistoni] gi|19416	0.959	0.619	0.686	2e-93
389614716	374	suppressor of profilin 2 [Papilio polyte	0.975	0.636	0.683	7e-92
289741721	375	suppressor of profilin 2 [Glossina morsi	0.954	0.621	0.690	8e-92

>gi|312378281|gb|EFR24902.1| hypothetical protein AND_10210 [Anopheles darlingi]

 Score =  361 bits (927), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 170/241 (70%), Positives = 195/241 (80%), Gaps = 5/241 (2%)

Query: 1   MAEVYSFG--INPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKV 58
           M E  SFG  +NP+T HAWN  R Q+A +PNN EVH+Y+ + A  +W   DVL+ HDL+V
Sbjct: 1   MTERLSFGGTVNPITCHAWNKDRSQIAISPNNNEVHIYKRDGA--EWKLTDVLNQHDLRV 58

Query: 59  TGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAA 118
            GIDWAPNTNRIVTC+ DRNAYVWTQ  DD KWKPTLVLLRINRAATCV+WSPLENKFA 
Sbjct: 59  MGIDWAPNTNRIVTCAVDRNAYVWTQG-DDGKWKPTLVLLRINRAATCVRWSPLENKFAV 117

Query: 119 GSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYI 178
           GSGARLISVCYFESENDWWV+KHIKKPI+ST+T LDWHPNN LL  GSTD+KVRVFSA+I
Sbjct: 118 GSGARLISVCYFESENDWWVSKHIKKPIRSTVTSLDWHPNNMLLVAGSTDYKVRVFSAFI 177

Query: 179 KDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRM 238
           KDIE  P+ T WG K  LG  L E  NS+SGGGW+HSV+FS DGN++CW  HD +INV M
Sbjct: 178 KDIEQHPEPTAWGPKKPLGQILAEFKNSTSGGGWVHSVSFSADGNRICWVGHDSAINVAM 237

Query: 239 S 239
           +
Sbjct: 238 A 238

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157116362|ref|XP_001658440.1| actin-related protein 2/3 complex subunit 1A [Aedes aegypti] gi|108876527|gb|EAT40752.1| AAEL007546-PA [Aedes aegypti]

 Score =  361 bits (926), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 168/238 (70%), Positives = 196/238 (82%), Gaps = 5/238 (2%)

Query: 1   MAEVYSFG--INPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKV 58
           M E ++FG  +NP+T HAWN  R Q+A +PNN EVH+Y+ E   ++W  LDVL+ HDL+V
Sbjct: 1   MTERHTFGGNLNPITCHAWNKDRSQIAISPNNNEVHIYKRE--GSEWKLLDVLNQHDLRV 58

Query: 59  TGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAA 118
            GIDWAPNTNRIVTC+ DRNAYVWTQ  DD KWKPTLVLLRINRAATCV+WSPLENKFA 
Sbjct: 59  MGIDWAPNTNRIVTCAVDRNAYVWTQG-DDGKWKPTLVLLRINRAATCVRWSPLENKFAV 117

Query: 119 GSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYI 178
           GSGARLISVCYFESENDWWV+KHIKKPI+ST+T LDWHPNN LL  GSTD+KVRVFSAYI
Sbjct: 118 GSGARLISVCYFESENDWWVSKHIKKPIRSTVTSLDWHPNNVLLVAGSTDYKVRVFSAYI 177

Query: 179 KDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINV 236
           KDIE  P++T WG K  LG  L E  NS++GGGW+HSV+FS DGN++CW  HD +IN+
Sbjct: 178 KDIEQHPETTAWGPKKPLGQMLAEFKNSTTGGGWVHSVSFSADGNRVCWVGHDSAINI 235

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|58392833|ref|XP_319655.2| AGAP008908-PA [Anopheles gambiae str. PEST] gi|55235211|gb|EAA14867.2| AGAP008908-PA [Anopheles gambiae str. PEST]

 Score =  358 bits (919), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 166/241 (68%), Positives = 196/241 (81%), Gaps = 5/241 (2%)

Query: 1   MAEVYSFG--INPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKV 58
           M E ++FG  ++P+T HAWN  R Q+A +PNN EVH+Y+  +  ++W   DVL+ HDL+V
Sbjct: 1   MTERHTFGGTVSPITCHAWNKDRSQIAISPNNNEVHIYK--RTGSEWKLTDVLNQHDLRV 58

Query: 59  TGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAA 118
            GIDWAPNTNRIVTC+ DRNAYVWTQ  DD KWKPTLVLLRINRAATCV+WSPLENKFA 
Sbjct: 59  MGIDWAPNTNRIVTCAVDRNAYVWTQG-DDGKWKPTLVLLRINRAATCVRWSPLENKFAV 117

Query: 119 GSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYI 178
           GSGARLISVCYFESENDWWV+KHIKKPI+ST+T LDWHPNN LL  GSTD+KVRVFSA+I
Sbjct: 118 GSGARLISVCYFESENDWWVSKHIKKPIRSTVTSLDWHPNNMLLVAGSTDYKVRVFSAFI 177

Query: 179 KDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRM 238
           KDIE  P+ T WG K  LG  L E  NSS+GGGW+HSV+FS DGN++CW  HD +IN+ M
Sbjct: 178 KDIEQHPEPTAWGPKKPLGQILAEFKNSSTGGGWVHSVSFSADGNRICWVGHDSAINIGM 237

Query: 239 S 239
           +
Sbjct: 238 A 238

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189235525|ref|XP_971606.2| PREDICTED: similar to actin-related protein 2/3 complex subunit 1A [Tribolium castaneum]

 Score =  356 bits (913), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 168/238 (70%), Positives = 196/238 (82%), Gaps = 5/238 (2%)

Query: 1   MAEVYSFG--INPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKV 58
           M E + FG  ++P+T HAWN  + Q+A +PNN EVH+YQ  ++ +DW  LDVL+ HDL+V
Sbjct: 1   MTEQHRFGTVVSPITCHAWNKDKTQIAISPNNHEVHIYQ--RSGSDWKPLDVLNQHDLRV 58

Query: 59  TGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAA 118
            GIDW PNTNRIVTC+ADRNAYVWT + D KKWKPTLVLLRINRAATCVKWSP ENKFA 
Sbjct: 59  MGIDWGPNTNRIVTCAADRNAYVWTLDKD-KKWKPTLVLLRINRAATCVKWSPNENKFAV 117

Query: 119 GSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYI 178
           GSGARLISVCYFESENDWWV+KHIKKPI+ST+T LDWHPNN LL  GSTDFKVR+FSAYI
Sbjct: 118 GSGARLISVCYFESENDWWVSKHIKKPIRSTVTTLDWHPNNVLLVAGSTDFKVRIFSAYI 177

Query: 179 KDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINV 236
           KDIE  P+ T WGSK  LG+ L E  NS++GGGW+ SV+FS DGNK+CW +HD +INV
Sbjct: 178 KDIEKTPEPTPWGSKMPLGHLLAEFANSNAGGGWVQSVSFSPDGNKVCWVAHDSTINV 235

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170047781|ref|XP_001851388.1| suppressor of profilin 2 [Culex quinquefasciatus] gi|167870075|gb|EDS33458.1| suppressor of profilin 2 [Culex quinquefasciatus]

 Score =  354 bits (909), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 166/237 (70%), Positives = 193/237 (81%), Gaps = 4/237 (1%)

Query: 1   MAEVYSFG-INPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVT 59
           M E ++FG +NP+T HAWN  R Q+A +PNN EVH+Y+ E   ++W   DVL+ HDL+V 
Sbjct: 1   MTERHTFGGLNPITCHAWNKDRSQIAISPNNNEVHIYKRE--GSEWKLRDVLNQHDLRVM 58

Query: 60  GIDWAPNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAG 119
           GIDWAPNTNRIVTC+ DRNAYVWTQ  DD KWKPTLVLLRINRAATCV+WSPLENKFA G
Sbjct: 59  GIDWAPNTNRIVTCAVDRNAYVWTQG-DDGKWKPTLVLLRINRAATCVRWSPLENKFAVG 117

Query: 120 SGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIK 179
           SGARLISVCYFESENDWWV+KHIKKPI+ST+T LDWHPNN LL  GSTD+KVRVFSA+IK
Sbjct: 118 SGARLISVCYFESENDWWVSKHIKKPIRSTVTSLDWHPNNMLLVAGSTDYKVRVFSAFIK 177

Query: 180 DIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINV 236
           DIE  P+ T WG K  LG  L E  NS+SGGGW+H+V+FS DGN++CW  HD  IN+
Sbjct: 178 DIEQHPEPTPWGPKKPLGQMLAEFKNSTSGGGWVHNVSFSADGNRICWVGHDSGINI 234

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242015804|ref|XP_002428537.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212513171|gb|EEB15799.1| conserved hypothetical protein [Pediculus humanus corporis]

 Score =  353 bits (907), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 167/242 (69%), Positives = 198/242 (81%), Gaps = 4/242 (1%)

Query: 1   MAEVYSFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTG 60
           M+E YSFG+NP+T  AWN  R QLA +PNN EV++Y  EK  +DW ++DVL+ HDL+VTG
Sbjct: 1   MSERYSFGVNPITYFAWNKDRTQLALSPNNHEVNIY--EKTNDDWREVDVLNQHDLRVTG 58

Query: 61  IDWAPNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGS 120
           IDWAPNTNRIVTC+ADRNAYVWTQ  D+K WKPTLVLLRINRAATCVKWSP ENKFA GS
Sbjct: 59  IDWAPNTNRIVTCAADRNAYVWTQGPDNK-WKPTLVLLRINRAATCVKWSPKENKFAVGS 117

Query: 121 GARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKD 180
           GARLI+VCYFES NDWWV+KHIKKPI+ST+T +DWHPNN LL  G +DFKVR+FSA+IK+
Sbjct: 118 GARLIAVCYFESVNDWWVSKHIKKPIRSTVTTIDWHPNNILLAAGCSDFKVRIFSAFIKE 177

Query: 181 IESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQ 240
           IE  P +T WGSK  LG  L E +N S  GGWIH+V+FSKDG++LCW +HD S+NV   +
Sbjct: 178 IEEVPTATEWGSKMVLGTLLAEFSNPSC-GGWIHNVSFSKDGSRLCWVAHDSSVNVADGK 236

Query: 241 QV 242
            V
Sbjct: 237 NV 238

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321459170|gb|EFX70226.1| hypothetical protein DAPPUDRAFT_300535 [Daphnia pulex]

 Score =  353 bits (907), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 164/237 (69%), Positives = 196/237 (82%), Gaps = 4/237 (1%)

Query: 1   MAEVYSFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTG 60
           M E  SFGI+P+T HAWN  R +LA +PN+ EVH+Y +++   +W   ++L  HDLKVTG
Sbjct: 1   MPESLSFGIDPITAHAWNKDRTKLAISPNSPEVHIYHFQRG--EWKLEEILKEHDLKVTG 58

Query: 61  IDWAPNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGS 120
           IDWAPNTNRIVTCSADRNAYVWTQ+ ++KKW+PTLVLLRINRAATCV+WSPLENKFA GS
Sbjct: 59  IDWAPNTNRIVTCSADRNAYVWTQS-EEKKWRPTLVLLRINRAATCVRWSPLENKFAVGS 117

Query: 121 GARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKD 180
           GARLISVCYFE ENDWWV+KHIKKPI+ST+TCLDWHPN+ LL  GSTDFKVRVFSAYIK+
Sbjct: 118 GARLISVCYFEKENDWWVSKHIKKPIRSTVTCLDWHPNDVLLAAGSTDFKVRVFSAYIKE 177

Query: 181 IESAPQSTNWGSKSTLGNCLVELNNSSSG-GGWIHSVAFSKDGNKLCWTSHDGSINV 236
           IE  P ST+WGSK  LG  + E +NS++G GGW+HSV FS  G+++ W  HD SI+V
Sbjct: 178 IEERPSSTSWGSKMPLGLMMAEFSNSTNGAGGWVHSVNFSSTGDRVAWVGHDSSISV 234

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195433597|ref|XP_002064797.1| GK15121 [Drosophila willistoni] gi|194160882|gb|EDW75783.1| GK15121 [Drosophila willistoni]

 Score =  347 bits (890), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 164/239 (68%), Positives = 193/239 (80%), Gaps = 5/239 (2%)

Query: 1   MAEVYSFG--INPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKV 58
           M E Y+FG  +  +T HAWN  R Q+A +PNN E+H+Y+ +  ++DW  LD+L+ HDL+V
Sbjct: 1   MGETYTFGNSLASITCHAWNKDRTQIALSPNNHEIHIYKRD-GSSDWKLLDILNQHDLRV 59

Query: 59  TGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAA 118
            GIDWA NTNRIV+C+ADRNAYVWTQ  DD KWKPTLVLLRINRAATCVKWSP ENKFA 
Sbjct: 60  MGIDWAKNTNRIVSCAADRNAYVWTQG-DDGKWKPTLVLLRINRAATCVKWSPAENKFAV 118

Query: 119 GSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYI 178
           GSGARLISVCYFESENDWWV+KHIKKPI+ST+T LDWHPNN LL  GSTD+KVRVFSA+I
Sbjct: 119 GSGARLISVCYFESENDWWVSKHIKKPIRSTVTSLDWHPNNVLLVAGSTDYKVRVFSAFI 178

Query: 179 KDIESAPQSTNWGSKSTLGNCLVELNNS-SSGGGWIHSVAFSKDGNKLCWTSHDGSINV 236
           KDIE  P  T WG++  LG  +VE  NS SSGGGWI+SV+FS DGNK+CW  HD  I++
Sbjct: 179 KDIEEPPSQTPWGARKPLGQLMVEFRNSASSGGGWINSVSFSSDGNKVCWVGHDSCISI 237

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|389614716|dbj|BAM20384.1| suppressor of profilin 2 [Papilio polytes]

 Score =  342 bits (877), Expect = 7e-92,   Method: Compositional matrix adjust.
 Identities = 166/243 (68%), Positives = 188/243 (77%), Gaps = 5/243 (2%)

Query: 1   MAEVYSFGIN--PVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKV 58
           M++  +FG +  P+T HAWN  R Q+AF+PNN EVH+YQ  K  N+W Q + L  HDL+V
Sbjct: 1   MSQTLTFGDSCAPITCHAWNKDRTQIAFSPNNNEVHIYQ--KEGNEWKQTNNLVEHDLRV 58

Query: 59  TGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAA 118
            GIDWAPNTNRIVTCS DRNAYVWTQ  DD KW  TLVLLRINRAATCVKWSP+ENKFA 
Sbjct: 59  MGIDWAPNTNRIVTCSVDRNAYVWTQG-DDGKWTTTLVLLRINRAATCVKWSPMENKFAV 117

Query: 119 GSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYI 178
           GSGARLIS+CYFE EN+WWV+KHIKKPI+ST+T LDWHPNN LL  GS DFKVRVFSAYI
Sbjct: 118 GSGARLISICYFEKENNWWVSKHIKKPIRSTVTTLDWHPNNILLVAGSADFKVRVFSAYI 177

Query: 179 KDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRM 238
           KDIE  P    WGSK  LG  L E  NS SGGGW+HSV+FS DGNK+ W  HD SIN+  
Sbjct: 178 KDIEDQPGPNVWGSKLPLGQLLAEFPNSPSGGGWVHSVSFSADGNKVAWVGHDSSINIAD 237

Query: 239 SQQ 241
           + Q
Sbjct: 238 ATQ 240

Source: Papilio polytes

Species: Papilio polytes

Genus: Papilio

Family: Papilionidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|289741721|gb|ADD19608.1| suppressor of profilin 2 [Glossina morsitans morsitans]

 Score =  342 bits (877), Expect = 8e-92,   Method: Compositional matrix adjust.
 Identities = 165/239 (69%), Positives = 188/239 (78%), Gaps = 6/239 (2%)

Query: 1   MAEVYSFG--INPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKV 58
           M E ++FG  + P+T HAWN  + Q+A +PNN E+H+Y+ E    DW  +DVL  HDL+V
Sbjct: 1   MVERFTFGGSLAPITCHAWNKDKTQIALSPNNNEIHIYRRE--GMDWKSIDVLKQHDLRV 58

Query: 59  TGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAA 118
            GIDWA NTNRIVTC ADRNAYVW Q  DD KWKPTLVLLRINRAATCVKWSP ENKFA 
Sbjct: 59  MGIDWAKNTNRIVTCGADRNAYVW-QQGDDGKWKPTLVLLRINRAATCVKWSPAENKFAV 117

Query: 119 GSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYI 178
           GSGARLISVCYFESENDWWV+KHIKKPI+ST+T LDWHPNN LL  GSTD+KVRVFSAYI
Sbjct: 118 GSGARLISVCYFESENDWWVSKHIKKPIRSTVTSLDWHPNNILLVAGSTDYKVRVFSAYI 177

Query: 179 KDIESAPQSTNWGSKSTLGNCLVELNNSS-SGGGWIHSVAFSKDGNKLCWTSHDGSINV 236
           KDIE  P  T WGS+  LGN + E  NS+ S GGWI++V+FS DGNK+CW  HD  INV
Sbjct: 178 KDIEDQPTPTPWGSRMPLGNLMAEFKNSANSNGGWINNVSFSSDGNKICWVGHDSCINV 236

Source: Glossina morsitans morsitans

Species: Glossina morsitans

Genus: Glossina

Family: Glossinidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	244
FB|FBgn0001961	377	Arpc1 "Actin-related protein 2	0.954	0.618	0.677	3.1e-90
ZFIN|ZDB-GENE-040116-1	370	arpc1a "actin related protein	0.934	0.616	0.622	8.3e-83
UNIPROTKB|Q5ZJI7	370	ARPC1A "Uncharacterized protei	0.934	0.616	0.622	2.8e-82
MGI|MGI:1928896	370	Arpc1a "actin related protein	0.934	0.616	0.618	2.9e-80
ZFIN|ZDB-GENE-030131-7414	369	arpc1b "actin related protein	0.922	0.609	0.616	2.9e-80
RGD|620834	370	Arpc1a "actin related protein	0.934	0.616	0.613	9.7e-80
UNIPROTKB|E2QYP4	366	ARPC1A "Uncharacterized protei	0.934	0.622	0.613	1.6e-79
UNIPROTKB|F1PT97	401	ARPC1A "Uncharacterized protei	0.934	0.568	0.613	1.6e-79
UNIPROTKB|E9PF58	279	ARPC1A "Actin-related protein	0.934	0.817	0.613	1.6e-79
UNIPROTKB|Q92747	370	ARPC1A "Actin-related protein	0.934	0.616	0.613	1.6e-79

FB|FBgn0001961 Arpc1 "Actin-related protein 2/3 complex, subunit 1" [Drosophila melanogaster (taxid:7227)]

 Score = 900 (321.9 bits), Expect = 3.1e-90, P = 3.1e-90
 Identities = 162/239 (67%), Positives = 189/239 (79%)

Query:     1 MAEVYSFGIN--PVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKV 58
             MAE Y+FG +   +T HAWN  R Q+A +PNN E+H+Y  E   +DW   DVL+ HDL+V
Sbjct:     1 MAETYTFGTSLASITCHAWNKDRTQIALSPNNHEIHIYSRE--GSDWKLADVLNQHDLRV 58

Query:    59 TGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAA 118
              GIDWA NTNRIV+C+ADRNAYVWTQ  DD KWKP LVLLRINRAATCVKWSP ENKFA 
Sbjct:    59 MGIDWAKNTNRIVSCAADRNAYVWTQG-DDGKWKPALVLLRINRAATCVKWSPAENKFAV 117

Query:   119 GSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYI 178
             GSGARLISVCYFESENDWWV+KHIKKPI+ST+T LDWHPNN LL  GSTD+KVRVFSA+I
Sbjct:   118 GSGARLISVCYFESENDWWVSKHIKKPIRSTVTSLDWHPNNVLLLAGSTDYKVRVFSAFI 177

Query:   179 KDIESAPQSTNWGSKSTLGNCLVELNNS-SSGGGWIHSVAFSKDGNKLCWTSHDGSINV 236
             KDIE  P  T WG++  LG  + E  NS +SGGGWI+SV+FS DGNK+CW  HD  +++
Sbjct:   178 KDIEEPPTPTPWGNRKPLGQLMAEFRNSQTSGGGWINSVSFSSDGNKVCWVGHDSCVSI 236

GO:0007010 "cytoskeleton organization" evidence=ISS

GO:0030041 "actin filament polymerization" evidence=NAS

GO:0003779 "actin binding" evidence=IEA;ISS

GO:0005885 "Arp2/3 protein complex" evidence=ISS;NAS;TAS

GO:0005200 "structural constituent of cytoskeleton" evidence=ISS

GO:0034314 "Arp2/3 complex-mediated actin nucleation" evidence=ISS

GO:0007413 "axonal fasciculation" evidence=IGI

GO:0030037 "actin filament reorganization involved in cell cycle" evidence=IMP

GO:0007409 "axonogenesis" evidence=IGI

GO:0008407 "chaeta morphogenesis" evidence=IMP

GO:0001745 "compound eye morphogenesis" evidence=IMP

GO:0030029 "actin filament-based process" evidence=IMP

GO:0030589 "pseudocleavage involved in syncytial blastoderm formation" evidence=IMP

GO:0022416 "chaeta development" evidence=IMP

GO:0006886 "intracellular protein transport" evidence=IMP

GO:0045747 "positive regulation of Notch signaling pathway" evidence=IMP

GO:0000902 "cell morphogenesis" evidence=IMP

GO:0051491 "positive regulation of filopodium assembly" evidence=IMP

ZFIN|ZDB-GENE-040116-1 arpc1a "actin related protein 2/3 complex, subunit 1A" [Danio rerio (taxid:7955)]

 Score = 813 (291.2 bits), Expect = 8.3e-83, Sum P(2) = 8.3e-83
 Identities = 145/233 (62%), Positives = 174/233 (74%)

Query:     4 VYSFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDW 63
             ++ F + P+T HAWN  R Q+A +PNN EVH+Y+  K+ N W ++  L  H+  +TGIDW
Sbjct:     3 LHQFLLEPITCHAWNRDRTQIAISPNNHEVHIYK--KSGNQWVKVHELKEHNGHITGIDW 60

Query:    64 APNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGAR 123
             AP ++RIVTC ADRNAYVW+Q   D  WKPTLV+LRINRAAT VKWSPLENKFA GSGAR
Sbjct:    61 APKSDRIVTCGADRNAYVWSQK--DGVWKPTLVILRINRAATFVKWSPLENKFAVGSGAR 118

Query:   124 LISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIES 183
             LISVCYFESENDWWV+KHIKKPI+ST+  LDWHPNN LL  GS DFK RVFSAYIK+++ 
Sbjct:   119 LISVCYFESENDWWVSKHIKKPIRSTVLSLDWHPNNVLLAAGSCDFKCRVFSAYIKEVDE 178

Query:   184 APQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINV 236
              P  T WGSK   G  + E   + SGG W+HSV FS  GN+L W SHD ++ V
Sbjct:   179 KPAPTPWGSKMPFGQVMTEFGGAGSGG-WVHSVCFSASGNRLAWVSHDSTVTV 230

GO:0005856 "cytoskeleton" evidence=IEA

GO:0030833 "regulation of actin filament polymerization" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

UNIPROTKB|Q5ZJI7 ARPC1A "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 808 (289.5 bits), Expect = 2.8e-82, Sum P(2) = 2.8e-82
 Identities = 145/233 (62%), Positives = 175/233 (75%)

Query:     4 VYSFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDW 63
             ++ F + P+T HAWN  R Q+A +PNN EVH+Y+  K  + W +   L  H+  +TGIDW
Sbjct:     3 LHQFLLEPITCHAWNRDRTQIAISPNNHEVHIYK--KNGSQWVKAHELKEHNGHITGIDW 60

Query:    64 APNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGAR 123
             AP ++RIVTC ADRNAYVW+Q   D  WKPTLV+LRINRAAT VKWSPLENKFA GSGAR
Sbjct:    61 APKSDRIVTCGADRNAYVWSQK--DGVWKPTLVILRINRAATFVKWSPLENKFAVGSGAR 118

Query:   124 LISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIES 183
             LISVCYFESENDWWV+KHIKKPI+ST+  LDWHPNN LL  GS DFK RVFSAYIK+++ 
Sbjct:   119 LISVCYFESENDWWVSKHIKKPIRSTVLSLDWHPNNVLLAAGSCDFKCRVFSAYIKEVDE 178

Query:   184 APQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINV 236
              P ST WGSK   G  + E   + SGG W+HSV+FS  GN+L W SHD +++V
Sbjct:   179 KPASTPWGSKMPFGQLMSEFGGAGSGG-WVHSVSFSASGNRLAWVSHDSTVSV 230

GO:0003779 "actin binding" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0030833 "regulation of actin filament polymerization" evidence=IEA

MGI|MGI:1928896 Arpc1a "actin related protein 2/3 complex, subunit 1A" [Mus musculus (taxid:10090)]

 Score = 806 (288.8 bits), Expect = 2.9e-80, P = 2.9e-80
 Identities = 144/233 (61%), Positives = 175/233 (75%)

Query:     4 VYSFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDW 63
             ++ F + P+T HAWN  R Q+A +PNN EVH+Y+  K  + W++   L  H+  +TGIDW
Sbjct:     3 LHQFLLEPITCHAWNRDRTQIALSPNNHEVHIYK--KNGSQWTKAHELKEHNGHITGIDW 60

Query:    64 APNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGAR 123
             AP ++RIVTC ADRNAYVW+Q   D  WKPTLV+LRINRAAT VKWSPLENKFA GSGAR
Sbjct:    61 APKSDRIVTCGADRNAYVWSQK--DGIWKPTLVILRINRAATFVKWSPLENKFAVGSGAR 118

Query:   124 LISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIES 183
             LISVCYFESENDWWV+KHIKKPI+ST+  LDWHPNN LL  GS DFK RVFSAYIK+++ 
Sbjct:   119 LISVCYFESENDWWVSKHIKKPIRSTVLSLDWHPNNVLLAAGSCDFKCRVFSAYIKEVDE 178

Query:   184 APQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINV 236
              P ST WGSK   G  + E   S +GG W+H V+FS  GN+L W SHD +++V
Sbjct:   179 KPASTPWGSKMPFGQLMSEFGGSGTGG-WVHGVSFSASGNRLAWVSHDSTVSV 230

GO:0003674 "molecular_function" evidence=ND

GO:0003779 "actin binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005885 "Arp2/3 protein complex" evidence=TAS

GO:0008150 "biological_process" evidence=ND

GO:0030833 "regulation of actin filament polymerization" evidence=IEA

ZFIN|ZDB-GENE-030131-7414 arpc1b "actin related protein 2/3 complex, subunit 1B" [Danio rerio (taxid:7955)]

 Score = 806 (288.8 bits), Expect = 2.9e-80, P = 2.9e-80
 Identities = 143/232 (61%), Positives = 170/232 (73%)

Query:     5 YSFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWA 64
             +SF + P++ HAWN  R Q+A  PNN EVH+Y   KA N+W+++ VL  H+ +VTGIDWA
Sbjct:     4 HSFLLEPISCHAWNKDRTQIALCPNNHEVHIYN--KAGNNWNKIHVLKEHNGQVTGIDWA 61

Query:    65 PNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARL 124
             P +NRIVTC  DRNAYVWT   D   WKPTLV+LRINRAA CVKWSP ENKFA GSG+RL
Sbjct:    62 PESNRIVTCGTDRNAYVWTLKGD--AWKPTLVILRINRAARCVKWSPKENKFAVGSGSRL 119

Query:   125 ISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESA 184
             ISVCYFE +NDWWV KHIKKPI+STI CLDWHPNN LL  GS DFK R+FSAYIK++E  
Sbjct:   120 ISVCYFEQDNDWWVCKHIKKPIRSTILCLDWHPNNVLLAAGSCDFKCRIFSAYIKEVEEK 179

Query:   185 PQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINV 236
             P  T WGSK   G  + E   +S   GW+H V FS  GN++ W SHD ++ V
Sbjct:   180 PAPTAWGSKMPFGEVMFESTGTS---GWVHGVCFSDSGNRVAWASHDSTVAV 228

GO:0003779 "actin binding" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0030833 "regulation of actin filament polymerization" evidence=IEA

RGD|620834 Arpc1a "actin related protein 2/3 complex, subunit 1A" [Rattus norvegicus (taxid:10116)]

 Score = 801 (287.0 bits), Expect = 9.7e-80, P = 9.7e-80
 Identities = 143/233 (61%), Positives = 175/233 (75%)

Query:     4 VYSFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDW 63
             ++ F + P+T HAWN  R Q+A +PNN EVH+Y+  K  + W++   L  H+  +TGIDW
Sbjct:     3 LHQFLLEPITCHAWNRDRTQIALSPNNHEVHIYK--KNGSQWTKAHELKEHNGHITGIDW 60

Query:    64 APNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGAR 123
             AP ++RIVTC ADRNAYVW+Q   D  WKPTLV+LRINRAAT VKWSPLENKFA GSGAR
Sbjct:    61 APKSDRIVTCGADRNAYVWSQK--DGIWKPTLVILRINRAATFVKWSPLENKFAVGSGAR 118

Query:   124 LISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIES 183
             LISVCYFESENDWWV+KHIKKPI+ST+  LDWHPNN LL  GS DFK RVFSAYIK+++ 
Sbjct:   119 LISVCYFESENDWWVSKHIKKPIRSTVLSLDWHPNNVLLAAGSCDFKCRVFSAYIKEVDE 178

Query:   184 APQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINV 236
              P ST WGSK   G  + E   S +GG W+H V+FS  G++L W SHD +++V
Sbjct:   179 KPASTPWGSKMPFGQLMSEFGGSGTGG-WVHGVSFSASGSRLAWVSHDSTVSV 230

GO:0003674 "molecular_function" evidence=ND

GO:0003779 "actin binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0005737 "cytoplasm" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0030833 "regulation of actin filament polymerization" evidence=IEA

UNIPROTKB|E2QYP4 ARPC1A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 799 (286.3 bits), Expect = 1.6e-79, P = 1.6e-79
 Identities = 143/233 (61%), Positives = 174/233 (74%)

Query:     4 VYSFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDW 63
             ++ F + P+T HAWN  R Q+A +PNN EVH+Y+  K  + W +   L  H+  +TGIDW
Sbjct:     3 LHQFLLEPITCHAWNRDRTQIALSPNNHEVHIYK--KNGSQWVKAHELKEHNGHITGIDW 60

Query:    64 APNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGAR 123
             AP ++RIVTC ADRNAYVW+Q   D  WKPTLV+LRINRAAT VKWSPLENKFA GSGAR
Sbjct:    61 APKSDRIVTCGADRNAYVWSQK--DGVWKPTLVILRINRAATFVKWSPLENKFAVGSGAR 118

Query:   124 LISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIES 183
             LISVCYFESENDWWV+KHIKKPI+ST+  LDWHPNN LL  GS DFK RVFSAYIK+++ 
Sbjct:   119 LISVCYFESENDWWVSKHIKKPIRSTVLSLDWHPNNVLLAAGSCDFKCRVFSAYIKEVDE 178

Query:   184 APQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINV 236
              P ST WGSK   G  + E   S +GG W+H V+FS  G++L W SHD +++V
Sbjct:   179 KPASTPWGSKMPFGQLMSEFGGSGTGG-WVHGVSFSASGSRLAWVSHDSTVSV 230

GO:0030833 "regulation of actin filament polymerization" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

UNIPROTKB|F1PT97 ARPC1A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 799 (286.3 bits), Expect = 1.6e-79, P = 1.6e-79
 Identities = 143/233 (61%), Positives = 174/233 (74%)

Query:     4 VYSFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDW 63
             ++ F + P+T HAWN  R Q+A +PNN EVH+Y+  K  + W +   L  H+  +TGIDW
Sbjct:    34 LHQFLLEPITCHAWNRDRTQIALSPNNHEVHIYK--KNGSQWVKAHELKEHNGHITGIDW 91

Query:    64 APNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGAR 123
             AP ++RIVTC ADRNAYVW+Q   D  WKPTLV+LRINRAAT VKWSPLENKFA GSGAR
Sbjct:    92 APKSDRIVTCGADRNAYVWSQK--DGVWKPTLVILRINRAATFVKWSPLENKFAVGSGAR 149

Query:   124 LISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIES 183
             LISVCYFESENDWWV+KHIKKPI+ST+  LDWHPNN LL  GS DFK RVFSAYIK+++ 
Sbjct:   150 LISVCYFESENDWWVSKHIKKPIRSTVLSLDWHPNNVLLAAGSCDFKCRVFSAYIKEVDE 209

Query:   184 APQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINV 236
              P ST WGSK   G  + E   S +GG W+H V+FS  G++L W SHD +++V
Sbjct:   210 KPASTPWGSKMPFGQLMSEFGGSGTGG-WVHGVSFSASGSRLAWVSHDSTVSV 261

GO:0030833 "regulation of actin filament polymerization" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

UNIPROTKB|E9PF58 ARPC1A "Actin-related protein 2/3 complex subunit 1A" [Homo sapiens (taxid:9606)]

 Score = 799 (286.3 bits), Expect = 1.6e-79, P = 1.6e-79
 Identities = 143/233 (61%), Positives = 174/233 (74%)

Query:     4 VYSFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDW 63
             ++ F + P+T HAWN  R Q+A +PNN EVH+Y+  K  + W +   L  H+  +TGIDW
Sbjct:     3 LHQFLLEPITCHAWNRDRTQIALSPNNHEVHIYK--KNGSQWVKAHELKEHNGHITGIDW 60

Query:    64 APNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGAR 123
             AP ++RIVTC ADRNAYVW+Q   D  WKPTLV+LRINRAAT VKWSPLENKFA GSGAR
Sbjct:    61 APKSDRIVTCGADRNAYVWSQK--DGVWKPTLVILRINRAATFVKWSPLENKFAVGSGAR 118

Query:   124 LISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIES 183
             LISVCYFESENDWWV+KHIKKPI+ST+  LDWHPNN LL  GS DFK RVFSAYIK+++ 
Sbjct:   119 LISVCYFESENDWWVSKHIKKPIRSTVLSLDWHPNNVLLAAGSCDFKCRVFSAYIKEVDE 178

Query:   184 APQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINV 236
              P ST WGSK   G  + E   S +GG W+H V+FS  G++L W SHD +++V
Sbjct:   179 KPASTPWGSKMPFGQLMSEFGGSGTGG-WVHGVSFSASGSRLAWVSHDSTVSV 230

GO:0003779 "actin binding" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0030833 "regulation of actin filament polymerization" evidence=IEA

UNIPROTKB|Q92747 ARPC1A "Actin-related protein 2/3 complex subunit 1A" [Homo sapiens (taxid:9606)]

 Score = 799 (286.3 bits), Expect = 1.6e-79, P = 1.6e-79
 Identities = 143/233 (61%), Positives = 174/233 (74%)

Query:     4 VYSFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDW 63
             ++ F + P+T HAWN  R Q+A +PNN EVH+Y+  K  + W +   L  H+  +TGIDW
Sbjct:     3 LHQFLLEPITCHAWNRDRTQIALSPNNHEVHIYK--KNGSQWVKAHELKEHNGHITGIDW 60

Query:    64 APNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGAR 123
             AP ++RIVTC ADRNAYVW+Q   D  WKPTLV+LRINRAAT VKWSPLENKFA GSGAR
Sbjct:    61 APKSDRIVTCGADRNAYVWSQK--DGVWKPTLVILRINRAATFVKWSPLENKFAVGSGAR 118

Query:   124 LISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIES 183
             LISVCYFESENDWWV+KHIKKPI+ST+  LDWHPNN LL  GS DFK RVFSAYIK+++ 
Sbjct:   119 LISVCYFESENDWWVSKHIKKPIRSTVLSLDWHPNNVLLAAGSCDFKCRVFSAYIKEVDE 178

Query:   184 APQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINV 236
              P ST WGSK   G  + E   S +GG W+H V+FS  G++L W SHD +++V
Sbjct:   179 KPASTPWGSKMPFGQLMSEFGGSGTGG-WVHGVSFSASGSRLAWVSHDSTVSV 230

GO:0030833 "regulation of actin filament polymerization" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0015629 "actin cytoskeleton" evidence=TAS

GO:0030036 "actin cytoskeleton organization" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q92747	ARC1A_HUMAN	No assigned EC number	0.6137	0.9344	0.6162	yes	N/A
P78774	ARPC1_SCHPO	No assigned EC number	0.5088	0.8975	0.5809	yes	N/A
O96622	ARPC1_DICDI	No assigned EC number	0.5155	0.8852	0.5853	yes	N/A
Q99PD4	ARC1A_RAT	No assigned EC number	0.6137	0.9344	0.6162	yes	N/A
Q9R0Q6	ARC1A_MOUSE	No assigned EC number	0.6180	0.9344	0.6162	yes	N/A
Q1JP79	ARC1A_BOVIN	No assigned EC number	0.6137	0.9344	0.6162	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	244
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	8e-13
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-12
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	3e-09
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	4e-09
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	5e-09
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-07
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	3e-07
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-06
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	2e-05
smart00320	40	smart00320, WD40, WD40 repeats	3e-05
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	0.002
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	0.003

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 66.2 bits (162), Expect = 8e-13
 Identities = 39/190 (20%), Positives = 71/190 (37%), Gaps = 29/190 (15%)

Query: 47  QLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATC 106
            L  L GH   V  + ++P+   + + S D    +W    D +  K    L         
Sbjct: 127 CLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLW----DLRTGKCVATLTGHTGEVNS 182

Query: 107 VKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGS 166
           V +SP   K  + S    I +  ++      +        ++ +  + + P+ +LL  GS
Sbjct: 183 VAFSPDGEKLLSSSSDGTIKL--WDLSTGKCLGTLRGH--ENGVNSVAFSPDGYLLASGS 238

Query: 167 TDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLC 226
            D  +RV+              +  +   +   L    NS      + S+A+S DG +L 
Sbjct: 239 EDGTIRVW--------------DLRTGECVQ-TLSGHTNS------VTSLAWSPDGKRLA 277

Query: 227 WTSHDGSINV 236
             S DG+I +
Sbjct: 278 SGSADGTIRI 287

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 65.8 bits (161), Expect = 1e-12
 Identities = 45/219 (20%), Positives = 76/219 (34%), Gaps = 51/219 (23%)

Query: 50  VLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKW 109
            L GH   VT + ++P+   + T S D    VW     +     TL           V  
Sbjct: 4   TLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGEL--LRTLKGHTG--PVRDVAA 59

Query: 110 SPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPI------KSTITCLDWHPNNHLLG 163
           S      A+GS  + I +        W +     + +       S ++ + + P+  +L 
Sbjct: 60  SADGTYLASGSSDKTIRL--------WDLET--GECVRTLTGHTSYVSSVAFSPDGRILS 109

Query: 164 CGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLV--------------------EL 203
             S D  ++V+     D+E+    T     +   N +                     +L
Sbjct: 110 SSSRDKTIKVW-----DVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDL 164

Query: 204 NNSSSGG------GWIHSVAFSKDGNKLCWTSHDGSINV 236
                        G ++SVAFS DG KL  +S DG+I +
Sbjct: 165 RTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKL 203

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 55.8 bits (135), Expect = 3e-09
 Identities = 29/130 (22%), Positives = 51/130 (39%), Gaps = 16/130 (12%)

Query: 50  VLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKW 109
            L GH  +V  + ++P+  ++++ S+D    +W    D    K    L         V +
Sbjct: 172 TLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLW----DLSTGKCLGTLRGHENGVNSVAF 227

Query: 110 SPLENKFAAGSGARLISVCYFESENDW-WVAKHIKKPIK---STITCLDWHPNNHLLGCG 165
           SP     A+GS    I V        W        + +    +++T L W P+   L  G
Sbjct: 228 SPDGYLLASGSEDGTIRV--------WDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASG 279

Query: 166 STDFKVRVFS 175
           S D  +R++ 
Sbjct: 280 SADGTIRIWD 289

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 55.9 bits (133), Expect = 4e-09
 Identities = 41/196 (20%), Positives = 76/196 (38%), Gaps = 28/196 (14%)

Query: 43  NDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCS-ADRNAYVWTQNNDDKKWKPTLVLLRIN 101
                +  L+GH   VT + ++P+   + + S  D    +W    D +  KP   L    
Sbjct: 143 TPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLW----DLRTGKPLSTLAGHT 198

Query: 102 RAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHL 161
              + + +SP      A SG+   ++  ++      +   +     S ++   + P+  L
Sbjct: 199 DPVSSLAFSPDGGLLIA-SGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSS--FSPDGSL 255

Query: 162 LGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKD 221
           L  GS+D  +R++                    +  + L  L+  SS    + SVAFS D
Sbjct: 256 LASGSSDGTIRLWDL-----------------RSSSSLLRTLSGHSS---SVLSVAFSPD 295

Query: 222 GNKLCWTSHDGSINVR 237
           G  L   S DG++ + 
Sbjct: 296 GKLLASGSSDGTVRLW 311

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 55.9 bits (133), Expect = 5e-09
 Identities = 38/222 (17%), Positives = 76/222 (34%), Gaps = 30/222 (13%)

Query: 15  HAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCS 74
            +++     LA   ++  + L+      +  S L  L GH   V  + ++P+   + + S
Sbjct: 247 SSFSPDGSLLASGSSDGTIRLW---DLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGS 303

Query: 75  ADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESEN 134
           +D    +W  + +  K   +L L       + + +SP  +   +G         +     
Sbjct: 304 SDGTVRLW--DLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTG 361

Query: 135 DWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKS 194
                        S +  + + P+  ++  GSTD  VR++                    
Sbjct: 362 KPLK----TLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDL------------------ 399

Query: 195 TLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINV 236
              +    L N       + S+ FS DG  L   S D +I +
Sbjct: 400 ---STGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRL 438

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 50.9 bits (120), Expect = 2e-07
 Identities = 38/185 (20%), Positives = 70/185 (37%), Gaps = 13/185 (7%)

Query: 51  LDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWS 110
           L GH+  +T I ++P+   +++ S+D    +W  +N +K  K +L  L  +  +     S
Sbjct: 61  LRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIK-SLEGLHDSSVSKLALSS 119

Query: 111 PLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNN-HLLGCGSTDF 169
           P  N     S +   +V  ++      + + ++     ++T L + P+   L    S D 
Sbjct: 120 PDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGH-SESVTSLAFSPDGKLLASGSSLDG 178

Query: 170 KVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTS 229
            ++++        S          S        L  S  GG  I S   S DG    W  
Sbjct: 179 TIKLWDLRTGKPLSTLAGHTDPVSS--------LAFSPDGGLLIASG--SSDGTIRLWDL 228

Query: 230 HDGSI 234
             G +
Sbjct: 229 STGKL 233

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 49.6 bits (119), Expect = 3e-07
 Identities = 42/196 (21%), Positives = 71/196 (36%), Gaps = 43/196 (21%)

Query: 48  LDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCV 107
           +  L GH   V+ + ++P+   + + S D+   VW    D +  K    L         V
Sbjct: 86  VRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVW----DVETGKCLTTLRGHTDWVNSV 141

Query: 108 KWSPLENKFAAGSGA-RLISVCYFESENDWWVAKHIKKPIK------STITCLDWHPNNH 160
            +SP +  F A S     I +    +           K +         +  + + P+  
Sbjct: 142 AFSP-DGTFVASSSQDGTIKLWDLRTG----------KCVATLTGHTGEVNSVAFSPDGE 190

Query: 161 LLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSK 220
            L   S+D  ++++     D+ +             G CL  L         ++SVAFS 
Sbjct: 191 KLLSSSSDGTIKLW-----DLST-------------GKCLGTLRGHE---NGVNSVAFSP 229

Query: 221 DGNKLCWTSHDGSINV 236
           DG  L   S DG+I V
Sbjct: 230 DGYLLASGSEDGTIRV 245

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 47.7 bits (114), Expect = 2e-06
 Identities = 23/111 (20%), Positives = 47/111 (42%), Gaps = 8/111 (7%)

Query: 10  NPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNR 69
             V + A++   ++L  + ++  + L+      +    L  L GH+  V  + ++P+   
Sbjct: 178 GEVNSVAFSPDGEKLLSSSSDGTIKLWDL----STGKCLGTLRGHENGVNSVAFSPDGYL 233

Query: 70  IVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGS 120
           + + S D    VW    D +  +    L     + T + WSP   + A+GS
Sbjct: 234 LASGSEDGTIRVW----DLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGS 280

Length = 289

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 40.4 bits (95), Expect = 2e-05
 Identities = 12/38 (31%), Positives = 18/38 (47%)

Query: 45 WSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVW 82
             L  L GH   VT + ++P+ N + + S D    VW
Sbjct: 1  GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVW 38

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 40.0 bits (94), Expect = 3e-05
 Identities = 10/39 (25%), Positives = 17/39 (43%)

Query: 44 DWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVW 82
              L  L GH   VT + ++P+   + + S D    +W
Sbjct: 1  SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLW 39

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 38.1 bits (89), Expect = 0.002
 Identities = 17/73 (23%), Positives = 31/73 (42%), Gaps = 4/73 (5%)

Query: 10  NPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNR 69
           N V + A++     LA    +  + ++           +  L GH   VT + W+P+  R
Sbjct: 220 NGVNSVAFSPDGYLLASGSEDGTIRVWDLRT----GECVQTLSGHTNSVTSLAWSPDGKR 275

Query: 70  IVTCSADRNAYVW 82
           + + SAD    +W
Sbjct: 276 LASGSADGTIRIW 288

Length = 289

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 34.3 bits (79), Expect = 0.003
 Identities = 10/29 (34%), Positives = 16/29 (55%)

Query: 147 KSTITCLDWHPNNHLLGCGSTDFKVRVFS 175
              +T + + P+ +LL  GS D  VRV+ 
Sbjct: 11  TGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	244
KOG0271|consensus	480		100.0
KOG0263|consensus	707		100.0
KOG0272|consensus	459		100.0
KOG0272|consensus	459		100.0
KOG0279|consensus	315		100.0
KOG0645|consensus	312		100.0
KOG0273|consensus	524		100.0
KOG0271|consensus	480		100.0
KOG0279|consensus	315		100.0
KOG0645|consensus	312		100.0
KOG0263|consensus	707		100.0
KOG0286|consensus	343		100.0
KOG0315|consensus	311		100.0
KOG0315|consensus	311		100.0
KOG0286|consensus	343		100.0
KOG0266|consensus	456		100.0
KOG0284|consensus	464		100.0
KOG0284|consensus	464		100.0
KOG0266|consensus	456		100.0
KOG0277|consensus	311		100.0
KOG0295|consensus	406		100.0
PTZ00421	493	coronin; Provisional	100.0
KOG0640|consensus	430		100.0
KOG0265|consensus	338		100.0
KOG0285|consensus	460		100.0
KOG0291|consensus	893		100.0
KOG0273|consensus	524		100.0
KOG0276|consensus	794		100.0
KOG1523|consensus	361		100.0
KOG0282|consensus	503		100.0
KOG0291|consensus	893		100.0
KOG0283|consensus	712		100.0
KOG0318|consensus	603		100.0
KOG0293|consensus	519		100.0
KOG0292|consensus	1202		100.0
KOG0319|consensus	775		100.0
KOG0295|consensus	406		100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0278|consensus	334		100.0
PTZ00420	568	coronin; Provisional	100.0
KOG0316|consensus	307		100.0
KOG1332|consensus	299		100.0
KOG0296|consensus	399		100.0
KOG0318|consensus	603		100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG1407|consensus	313		100.0
KOG0281|consensus	499		100.0
KOG0316|consensus	307		100.0
KOG0319|consensus	775		100.0
KOG0305|consensus	484		100.0
KOG0292|consensus	1202		100.0
KOG1446|consensus	311		100.0
KOG0289|consensus	506		100.0
PTZ00421	493	coronin; Provisional	100.0
KOG0276|consensus	794		100.0
KOG0313|consensus	423		100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0643|consensus	327		99.98
KOG0277|consensus	311		99.98
KOG0772|consensus	641		99.98
KOG0264|consensus	422		99.98
PLN00181	793	protein SPA1-RELATED; Provisional	99.98
KOG0310|consensus	487		99.98
PTZ00420	568	coronin; Provisional	99.98
KOG0264|consensus	422		99.97
KOG0282|consensus	503		99.97
KOG0294|consensus	362		99.97
KOG0275|consensus	508		99.97
KOG0973|consensus	942		99.97
KOG0313|consensus	423		99.97
KOG0265|consensus	338		99.97
KOG0306|consensus	888		99.97
KOG0289|consensus	506		99.97
KOG0643|consensus	327		99.97
KOG2445|consensus	361		99.97
KOG0285|consensus	460		99.97
KOG1332|consensus	299		99.97
KOG0281|consensus	499		99.97
KOG0646|consensus	476		99.97
KOG0306|consensus	888		99.97
KOG0973|consensus	942		99.97
KOG0302|consensus	440		99.97
KOG0641|consensus	350		99.97
KOG0647|consensus	347		99.97
KOG0310|consensus	487		99.97
KOG0772|consensus	641		99.96
KOG0300|consensus	481		99.96
KOG0269|consensus	839		99.96
KOG0299|consensus	479		99.96
KOG0275|consensus	508		99.96
KOG0268|consensus	433		99.96
KOG0308|consensus	735		99.96
KOG0308|consensus	735		99.96
KOG1036|consensus	323		99.96
KOG4283|consensus	397		99.96
KOG0288|consensus	459		99.96
KOG1407|consensus	313		99.96
KOG0641|consensus	350		99.96
KOG0267|consensus	825		99.96
KOG4328|consensus	498		99.95
KOG0640|consensus	430		99.95
KOG0274|consensus	537		99.95
KOG1446|consensus	311		99.95
KOG0274|consensus	537		99.95
KOG0269|consensus	839		99.95
KOG0302|consensus	440		99.95
KOG0267|consensus	825		99.95
KOG1273|consensus	405		99.95
KOG0288|consensus	459		99.95
KOG0296|consensus	399		99.95
KOG1408|consensus	1080		99.95
KOG0283|consensus	712		99.95
KOG1274|consensus	933		99.94
KOG0278|consensus	334		99.94
KOG0299|consensus	479		99.94
KOG0300|consensus	481		99.94
KOG0646|consensus	476		99.94
KOG0293|consensus	519		99.94
KOG2096|consensus	420		99.94
KOG0305|consensus	484		99.94
KOG0639|consensus	705		99.94
KOG2048|consensus	691		99.93
KOG0307|consensus	1049		99.93
KOG1539|consensus	910		99.93
KOG0301|consensus	745		99.93
KOG0647|consensus	347		99.93
KOG0270|consensus	463		99.93
KOG0270|consensus	463		99.93
KOG0639|consensus	705		99.93
KOG2055|consensus	514		99.93
KOG0303|consensus	472		99.93
KOG2055|consensus	514		99.93
KOG0290|consensus	364		99.93
KOG0301|consensus	745		99.92
KOG4378|consensus	673		99.92
KOG2096|consensus	420		99.92
KOG4283|consensus	397		99.92
KOG0642|consensus	577		99.92
KOG0771|consensus	398		99.92
KOG1007|consensus	370		99.92
KOG1274|consensus	933		99.91
KOG1063|consensus	764		99.91
KOG2919|consensus	406		99.91
KOG1034|consensus	385		99.91
KOG1009|consensus	434		99.91
KOG2048|consensus	691		99.91
KOG1036|consensus	323		99.91
KOG1007|consensus	370		99.91
KOG0307|consensus	1049		99.91
KOG2106|consensus	626		99.91
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.9
KOG0321|consensus	720		99.9
KOG0303|consensus	472		99.9
KOG2106|consensus	626		99.9
KOG1539|consensus	910		99.9
KOG0294|consensus	362		99.89
KOG1538|consensus	1081		99.89
KOG2445|consensus	361		99.89
KOG1188|consensus	376		99.89
KOG1063|consensus	764		99.89
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.89
KOG0321|consensus	720		99.88
KOG1445|consensus	1012		99.88
KOG0650|consensus	733		99.88
PRK01742	429	tolB translocation protein TolB; Provisional	99.88
KOG4328|consensus	498		99.88
KOG1445|consensus	1012		99.87
KOG2919|consensus	406		99.87
KOG1408|consensus	1080		99.87
KOG2394|consensus	636		99.86
KOG0322|consensus	323		99.86
KOG1587|consensus	555		99.86
PRK11028	330	6-phosphogluconolactonase; Provisional	99.85
KOG0268|consensus	433		99.85
KOG4378|consensus	673		99.85
KOG4227|consensus	609		99.85
KOG2110|consensus	391		99.84
KOG1310|consensus	758		99.84
KOG1188|consensus	376		99.84
KOG1034|consensus	385		99.84
KOG0650|consensus	733		99.84
KOG1273|consensus	405		99.84
KOG0290|consensus	364		99.84
PRK11028	330	6-phosphogluconolactonase; Provisional	99.84
KOG2110|consensus	391		99.83
KOG1009|consensus	434		99.83
KOG1524|consensus	737		99.83
KOG0649|consensus	325		99.83
PRK03629	429	tolB translocation protein TolB; Provisional	99.82
PRK05137	435	tolB translocation protein TolB; Provisional	99.82
KOG1524|consensus	737		99.82
PRK02889	427	tolB translocation protein TolB; Provisional	99.82
COG2319	466	FOG: WD40 repeat [General function prediction only	99.82
KOG0644|consensus	1113		99.81
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.81
KOG1963|consensus	792		99.81
KOG1272|consensus	545		99.81
KOG1523|consensus	361		99.81
PRK04922	433	tolB translocation protein TolB; Provisional	99.8
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.8
KOG0322|consensus	323		99.8
COG2319	466	FOG: WD40 repeat [General function prediction only	99.79
KOG1310|consensus	758		99.79
PRK01742	429	tolB translocation protein TolB; Provisional	99.79
KOG2111|consensus	346		99.78
KOG3881|consensus	412		99.78
KOG2394|consensus	636		99.77
KOG2139|consensus	445		99.77
KOG2139|consensus	445		99.76
PRK02889	427	tolB translocation protein TolB; Provisional	99.76
KOG1517|consensus	1387		99.76
KOG0771|consensus	398		99.75
KOG2111|consensus	346		99.75
KOG0642|consensus	577		99.74
KOG1517|consensus	1387		99.74
KOG1240|consensus	1431		99.74
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.73
PRK05137	435	tolB translocation protein TolB; Provisional	99.73
KOG1587|consensus	555		99.72
KOG1354|consensus	433		99.72
PRK03629	429	tolB translocation protein TolB; Provisional	99.72
KOG0644|consensus	1113		99.72
PRK01029	428	tolB translocation protein TolB; Provisional	99.72
PRK00178	430	tolB translocation protein TolB; Provisional	99.72
KOG4227|consensus	609		99.71
PRK04922	433	tolB translocation protein TolB; Provisional	99.71
KOG0974|consensus	967		99.71
KOG1409|consensus	404		99.71
KOG4497|consensus	447		99.71
PRK04792	448	tolB translocation protein TolB; Provisional	99.7
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.7
KOG1963|consensus	792		99.69
KOG1272|consensus	545		99.69
KOG0649|consensus	325		99.69
KOG4547|consensus	541		99.69
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.68
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.67
KOG4497|consensus	447		99.66
KOG2321|consensus	703		99.65
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.65
KOG1334|consensus	559		99.64
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.63
KOG1240|consensus	1431		99.62
KOG2321|consensus	703		99.62
PRK00178	430	tolB translocation protein TolB; Provisional	99.62
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.61
KOG0280|consensus	339		99.61
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.59
KOG1538|consensus	1081		99.58
KOG3881|consensus	412		99.58
PRK04792	448	tolB translocation protein TolB; Provisional	99.57
KOG0974|consensus	967		99.56
KOG1354|consensus	433		99.55
KOG2315|consensus	566		99.55
PRK01029	428	tolB translocation protein TolB; Provisional	99.55
PRK04043	419	tolB translocation protein TolB; Provisional	99.54
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.53
KOG0280|consensus	339		99.53
KOG1064|consensus	2439		99.53
COG4946	668	Uncharacterized protein related to the periplasmic	99.53
KOG4532|consensus	344		99.52
KOG4190|consensus	1034		99.49
KOG2041|consensus	1189		99.49
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.47
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	99.46
KOG1334|consensus	559		99.46
KOG1409|consensus	404		99.43
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.43
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.43
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	99.43
KOG0309|consensus	1081		99.39
KOG3914|consensus	390		99.39
KOG4532|consensus	344		99.36
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.34
COG4946	668	Uncharacterized protein related to the periplasmic	99.34
KOG3914|consensus	390		99.33
PRK04043	419	tolB translocation protein TolB; Provisional	99.31
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.29
KOG4547|consensus	541		99.29
KOG0309|consensus	1081		99.29
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.26
KOG1064|consensus	2439		99.25
KOG4714|consensus	319		99.23
KOG2066|consensus	846		99.23
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.23
KOG2315|consensus	566		99.21
KOG4714|consensus	319		99.21
KOG1832|consensus	1516		99.19
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	99.18
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.18
KOG0882|consensus	558		99.18
KOG2695|consensus	425		99.18
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.18
KOG4190|consensus	1034		99.16
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	99.15
KOG1920|consensus	1265		99.14
KOG2695|consensus	425		99.14
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	99.14
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	99.13
KOG2114|consensus	933		99.12
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	99.03
KOG2041|consensus	1189		99.03
KOG1008|consensus	783		99.02
KOG2314|consensus	698		99.0
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	99.0
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	99.0
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.98
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.97
KOG1275|consensus	1118		98.94
KOG1275|consensus	1118		98.91
KOG2066|consensus	846		98.9
KOG2314|consensus	698		98.88
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.84
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.84
KOG3617|consensus	1416		98.84
KOG1912|consensus	1062		98.83
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	98.81
KOG0882|consensus	558		98.81
KOG3621|consensus	726		98.79
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.78
KOG1920|consensus	1265		98.76
KOG1645|consensus	463		98.75
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.74
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.74
PRK02888	635	nitrous-oxide reductase; Validated	98.72
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.7
KOG3617|consensus	1416		98.66
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	98.62
KOG1912|consensus	1062		98.59
KOG3621|consensus	726		98.59
PRK02888	635	nitrous-oxide reductase; Validated	98.57
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.55
COG3391	381	Uncharacterized conserved protein [Function unknow	98.55
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.54
KOG1832|consensus	1516		98.47
KOG1008|consensus	783		98.46
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	98.43
KOG2114|consensus	933		98.42
KOG4640|consensus	665		98.41
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.4
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.35
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.34
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	98.33
PRK13616	591	lipoprotein LpqB; Provisional	98.31
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.31
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	98.26
KOG4640|consensus	665		98.25
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	98.25
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	98.2
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	98.2
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	98.19
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.18
KOG2444|consensus	238		98.17
KOG1645|consensus	463		98.16
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	98.13
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	98.11
PHA02713	557	hypothetical protein; Provisional	98.09
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	98.07
KOG2395|consensus	644		98.07
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	98.07
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.06
COG3391	381	Uncharacterized conserved protein [Function unknow	98.05
PRK13616	591	lipoprotein LpqB; Provisional	98.04
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	98.0
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	97.96
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	97.89
KOG4649|consensus	354		97.86
KOG2395|consensus	644		97.86
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	97.85
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	97.82
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	97.8
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	97.8
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.78
KOG2079|consensus	1206		97.78
KOG3630|consensus	1405		97.75
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	97.71
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.7
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	97.69
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.69
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	97.68
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.66
KOG4441|consensus	571		97.65
KOG4649|consensus	354		97.64
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	97.64
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	97.62
KOG4441|consensus	571		97.59
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	97.58
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	97.56
PHA03098	534	kelch-like protein; Provisional	97.54
KOG2079|consensus	1206		97.53
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	97.47
PHA02790	480	Kelch-like protein; Provisional	97.47
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.44
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	97.41
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.4
KOG1916|consensus	1283		97.3
PHA02713	557	hypothetical protein; Provisional	97.29
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	97.29
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.29
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	97.22
PRK13684	334	Ycf48-like protein; Provisional	97.2
KOG2377|consensus	657		97.17
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	97.16
KOG2444|consensus	238		97.09
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	96.94
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	96.8
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	96.74
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	96.73
PRK10115	686	protease 2; Provisional	96.71
KOG2377|consensus	657		96.7
PRK13684	334	Ycf48-like protein; Provisional	96.7
KOG2247|consensus	615		96.69
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	96.68
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	96.54
PF13449	326	Phytase-like: Esterase-like activity of phytase	96.53
PLN00033	398	photosystem II stability/assembly factor; Provisio	96.5
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	96.48
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	96.47
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	96.41
KOG4499|consensus	310		96.4
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	96.35
KOG3630|consensus	1405		96.35
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	96.33
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	96.32
KOG4499|consensus	310		96.26
PHA03098	534	kelch-like protein; Provisional	96.16
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	96.08
KOG2280|consensus	829		96.05
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	96.04
PF14727	418	PHTB1_N: PTHB1 N-terminus	95.97
PF13449	326	Phytase-like: Esterase-like activity of phytase	95.95
KOG2247|consensus	615		95.94
COG4590	733	ABC-type uncharacterized transport system, permeas	95.93
PF14727	418	PHTB1_N: PTHB1 N-terminus	95.91
COG5167	776	VID27 Protein involved in vacuole import and degra	95.83
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	95.79
PHA02790	480	Kelch-like protein; Provisional	95.75
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	95.69
KOG4460|consensus	741		95.65
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	95.61
COG4590	733	ABC-type uncharacterized transport system, permeas	95.58
PLN02153	341	epithiospecifier protein	95.56
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	95.53
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	95.51
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	95.46
PF08801	422	Nucleoporin_N: Nup133 N terminal like; InterPro: I	95.45
KOG1900|consensus	1311		95.42
KOG1897|consensus	1096		95.4
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	95.37
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	95.07
KOG1916|consensus	1283		95.06
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	95.01
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	94.84
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	94.76
KOG2280|consensus	829		94.74
PLN02193	470	nitrile-specifier protein	94.72
COG5276	370	Uncharacterized conserved protein [Function unknow	94.66
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	94.62
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	94.61
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	94.61
PLN02153	341	epithiospecifier protein	94.43
PLN00033	398	photosystem II stability/assembly factor; Provisio	94.37
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	94.3
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	94.2
PF11635	753	Med16: Mediator complex subunit 16; InterPro: IPR0	94.17
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	94.13
COG5167	776	VID27 Protein involved in vacuole import and degra	94.13
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	93.87
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	93.86
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	93.83
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	93.71
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	93.6
KOG4460|consensus	741		93.53
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	93.36
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	93.34
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	93.28
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	92.74
PLN02193	470	nitrile-specifier protein	92.5
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	92.18
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	92.04
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	92.02
KOG3616|consensus	1636		92.02
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	91.91
TIGR02171	912	Fb_sc_TIGR02171 Fibrobacter succinogenes paralogou	91.19
KOG1983|consensus	993		90.88
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	90.67
KOG1520|consensus	376		90.4
PRK13615	557	lipoprotein LpqB; Provisional	90.31
TIGR02171	912	Fb_sc_TIGR02171 Fibrobacter succinogenes paralogou	90.28
KOG1900|consensus	1311		89.95
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	89.16
COG5290	1243	IkappaB kinase complex, IKAP component [Transcript	88.97
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	88.73
PF01436	28	NHL: NHL repeat; InterPro: IPR001258 The NHL repea	88.56
PF12768	281	Rax2: Cortical protein marker for cell polarity	87.88
PF10395	670	Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an	87.67
COG5276	370	Uncharacterized conserved protein [Function unknow	87.53
PF01731	86	Arylesterase: Arylesterase; InterPro: IPR002640 Th	87.47
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	87.37
PRK10115	686	protease 2; Provisional	87.32

>KOG0271|consensus

Probab=100.00  E-value=8.9e-43  Score=248.23  Aligned_cols=209  Identities=17%  Similarity=0.266  Sum_probs=178.6

Q ss_pred             EeCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeee
Q psy11529          6 SFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQN   85 (244)
Q Consensus         6 ~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~   85 (244)
                      .-|.++|.|++|+|+|+.|++|+.|.++++||+.+  .  .+..+.++|..-|.|++|+|||+.||+|+.||+|++||  
T Consensus       112 ~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~T--e--Tp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwd--  185 (480)
T KOG0271|consen  112 AGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDT--E--TPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWD--  185 (480)
T ss_pred             CCCCCcEEEEEecCCCceEEecCCCceEEeeccCC--C--CcceeecCCccEEEEEEECCCcchhhccccCCeEEEec--
Confidence            34689999999999999999999999999999987  4  68889999999999999999999999999999999999  


Q ss_pred             CCCCCceeeEEEeccCcceEEEEECC-----CCCeEEEeeCCCeEEEEEeecCCC-------------------------
Q psy11529         86 NDDKKWKPTLVLLRINRAATCVKWSP-----LENKFAAGSGARLISVCYFESEND-------------------------  135 (244)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~d~~i~i~d~~~~~~-------------------------  135 (244)
                      .++++..-. .+.+|...|++++|.|     ..++||+++.||.++|||+..+..                         
T Consensus       186 pktg~~~g~-~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~gliySg  264 (480)
T KOG0271|consen  186 PKTGQQIGR-ALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEGLIYSG  264 (480)
T ss_pred             CCCCCcccc-cccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCceEEec
Confidence            888775433 3567888888888876     356788888888888888644221                         


Q ss_pred             --------------------------------------------------------------------------------
Q psy11529        136 --------------------------------------------------------------------------------  135 (244)
Q Consensus       136 --------------------------------------------------------------------------------  135 (244)
                                                                                                      
T Consensus       265 S~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsD  344 (480)
T KOG0271|consen  265 SQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSD  344 (480)
T ss_pred             CCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecC
Confidence                                                                                            


Q ss_pred             -----ceE------EEeeecCCCCceeEEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEec
Q psy11529        136 -----WWV------AKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELN  204 (244)
Q Consensus       136 -----~~~------~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (244)
                           .|.      +.....+|..-|+.+.|+||++++|+++-|..|++||.                  .+++.+.+|+
T Consensus       345 d~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g------------------~tGk~lasfR  406 (480)
T KOG0271|consen  345 DFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDG------------------RTGKFLASFR  406 (480)
T ss_pred             CceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeC------------------CCcchhhhhh
Confidence                 000      01122345678999999999999999999999999999                  7899999999


Q ss_pred             CCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCCC
Q psy11529        205 NSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQV  242 (244)
Q Consensus       205 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~  242 (244)
                      +|   -..|+.++|+.|.++|++|+.|.++++|++++.
T Consensus       407 GH---v~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tk  441 (480)
T KOG0271|consen  407 GH---VAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTK  441 (480)
T ss_pred             hc---cceeEEEEeccCccEEEEcCCCceEEEEEeeee
Confidence            99   999999999999999999999999999999864

>KOG0263|consensus

Probab=100.00  E-value=1.8e-42  Score=265.98  Aligned_cols=205  Identities=25%  Similarity=0.372  Sum_probs=189.2

Q ss_pred             EEeCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEee
Q psy11529          5 YSFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQ   84 (244)
Q Consensus         5 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~   84 (244)
                      ..-|.++|..+.|+|+.++|+++++|+++++|.+.+  .  .++..+++|..+|+.+.|+|.|-|||+++.|++-++|. 
T Consensus       447 L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t--~--s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs-  521 (707)
T KOG0263|consen  447 LYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDT--W--SCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWS-  521 (707)
T ss_pred             eecCCCceeeeeecccccceeeccCCcceeeeeccc--c--eeEEEecCCCcceeeEEecCCceEEEecCCCceeeeee-
Confidence            345799999999999999999999999999999987  3  78888999999999999999999999999999999999 


Q ss_pred             eCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEE
Q psy11529         85 NNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGC  164 (244)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~  164 (244)
                       .....  +...+.+|.+.|.|+.|+|+..|+++|+.|.++++||+.++..    ...+.+|.++|.+++|+|+|++|++
T Consensus       522 -~d~~~--PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~----VRiF~GH~~~V~al~~Sp~Gr~LaS  594 (707)
T KOG0263|consen  522 -TDHNK--PLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNS----VRIFTGHKGPVTALAFSPCGRYLAS  594 (707)
T ss_pred             -cccCC--chhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcE----EEEecCCCCceEEEEEcCCCceEee
Confidence             44433  3444568999999999999999999999999999999999975    6777899999999999999999999


Q ss_pred             eeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCCC
Q psy11529        165 GSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQV  242 (244)
Q Consensus       165 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~  242 (244)
                      |+.||.|.+||+                  ..+..+..+.+|   .+.|.++.||.||..||+|+.|.+|++||+.+.
T Consensus       595 g~ed~~I~iWDl------------------~~~~~v~~l~~H---t~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~  651 (707)
T KOG0263|consen  595 GDEDGLIKIWDL------------------ANGSLVKQLKGH---TGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV  651 (707)
T ss_pred             cccCCcEEEEEc------------------CCCcchhhhhcc---cCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence            999999999999                  788999999999   999999999999999999999999999998753

>KOG0272|consensus

Probab=100.00  E-value=1e-42  Score=250.32  Aligned_cols=208  Identities=18%  Similarity=0.238  Sum_probs=188.9

Q ss_pred             eEEeCCCceEEEEEcCC--CCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEE
Q psy11529          4 VYSFGINPVTTHAWNNT--RQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYV   81 (244)
Q Consensus         4 ~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i   81 (244)
                      .+.-|.+.|.++.|+|.  +..+|+|+.||++++|++++  .  .++..+.+|...|..++|+|+|++|++++.|.+-++
T Consensus       212 ~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~--e--~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRl  287 (459)
T KOG0272|consen  212 TLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQ--E--TPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRL  287 (459)
T ss_pred             EEeccccceeeEEEccCCCccceeeeccCCceeeeccCC--C--cchhhhhcchhhheeeeecCCCceeeecccccchhh
Confidence            34457899999999996  56899999999999999987  4  788999999999999999999999999999999999


Q ss_pred             EeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCE
Q psy11529         82 WTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHL  161 (244)
Q Consensus        82 wd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~  161 (244)
                      ||  ++++...  +...+|...|.+++|+|||.++++|+.|..-+|||++++..    .....+|...|.+++|+|+|..
T Consensus       288 WD--~~tk~El--L~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~----im~L~gH~k~I~~V~fsPNGy~  359 (459)
T KOG0272|consen  288 WD--LETKSEL--LLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRC----IMFLAGHIKEILSVAFSPNGYH  359 (459)
T ss_pred             cc--cccchhh--HhhcccccccceeEecCCCceeeccCccchhheeecccCcE----EEEecccccceeeEeECCCceE
Confidence            99  7777643  33468999999999999999999999999999999999986    6667789999999999999999


Q ss_pred             EEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEec-CCCEEEEeeCCCcEEEEeCC
Q psy11529        162 LGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSK-DGNKLCWTSHDGSINVRMSQ  240 (244)
Q Consensus       162 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vwd~~  240 (244)
                      ||||+.|++++|||+                  +....+..+.+|   ..-|+.+.|+| .|.+|+|++.|++++||.-+
T Consensus       360 lATgs~Dnt~kVWDL------------------R~r~~ly~ipAH---~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~  418 (459)
T KOG0272|consen  360 LATGSSDNTCKVWDL------------------RMRSELYTIPAH---SNLVSQVKYSPQEGYFLVTASYDNTVKIWSTR  418 (459)
T ss_pred             EeecCCCCcEEEeee------------------cccccceecccc---cchhhheEecccCCeEEEEcccCcceeeecCC
Confidence            999999999999999                  455668999999   99999999999 78899999999999999988


Q ss_pred             CCCC
Q psy11529        241 QVLP  244 (244)
Q Consensus       241 ~~~p  244 (244)
                      +..|
T Consensus       419 ~~~~  422 (459)
T KOG0272|consen  419 TWSP  422 (459)
T ss_pred             Cccc
Confidence            7654

>KOG0272|consensus

Probab=100.00  E-value=2.7e-42  Score=248.18  Aligned_cols=201  Identities=20%  Similarity=0.247  Sum_probs=186.4

Q ss_pred             CCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCC--CCeEEEEeCCccEEEEeeeC
Q psy11529          9 INPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPN--TNRIVTCSADRNAYVWTQNN   86 (244)
Q Consensus         9 ~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~iwd~~~   86 (244)
                      ..||..+.|++|++.|++|+.+|.++||+..+  .  ..+.++.+|...|.++.|+|.  +..+++|+.||++++|+  +
T Consensus       175 ~rPis~~~fS~ds~~laT~swsG~~kvW~~~~--~--~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~--~  248 (459)
T KOG0272|consen  175 TRPISGCSFSRDSKHLATGSWSGLVKVWSVPQ--C--NLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWK--L  248 (459)
T ss_pred             CCcceeeEeecCCCeEEEeecCCceeEeecCC--c--ceeEEEeccccceeeEEEccCCCccceeeeccCCceeeec--c
Confidence            78999999999999999999999999999987  4  788999999999999999995  66899999999999999  5


Q ss_pred             CCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEee
Q psy11529         87 DDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGS  166 (244)
Q Consensus        87 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~  166 (244)
                      .+...  ...+.+|...|..++|+|+|++|++++.|.+-++||+++...    .....+|...|.+++|+|||.++++|+
T Consensus       249 ~~e~~--l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~E----lL~QEGHs~~v~~iaf~~DGSL~~tGG  322 (459)
T KOG0272|consen  249 SQETP--LQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSE----LLLQEGHSKGVFSIAFQPDGSLAATGG  322 (459)
T ss_pred             CCCcc--hhhhhcchhhheeeeecCCCceeeecccccchhhcccccchh----hHhhcccccccceeEecCCCceeeccC
Confidence            65543  445578999999999999999999999999999999999875    566788999999999999999999999


Q ss_pred             CCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCCC
Q psy11529        167 TDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQV  242 (244)
Q Consensus       167 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~  242 (244)
                      .|..-+|||+                  +++.++..+.+|   ...|.+++|+|+|..|||||.|++++|||++.-
T Consensus       323 lD~~~RvWDl------------------Rtgr~im~L~gH---~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r  377 (459)
T KOG0272|consen  323 LDSLGRVWDL------------------RTGRCIMFLAGH---IKEILSVAFSPNGYHLATGSSDNTCKVWDLRMR  377 (459)
T ss_pred             ccchhheeec------------------ccCcEEEEeccc---ccceeeEeECCCceEEeecCCCCcEEEeeeccc
Confidence            9999999999                  789999999999   999999999999999999999999999999864

>KOG0279|consensus

Probab=100.00  E-value=9.5e-39  Score=218.84  Aligned_cols=204  Identities=16%  Similarity=0.189  Sum_probs=178.4

Q ss_pred             EEeCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEee
Q psy11529          5 YSFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQ   84 (244)
Q Consensus         5 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~   84 (244)
                      +.-|...|..++.++||++.++++.|+.+++||+.+  +  +..+.|.+|...|.+++|+||.+.+++|+.|.+|++|+ 
T Consensus        59 ~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~--g--~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwn-  133 (315)
T KOG0279|consen   59 LTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLAT--G--ESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWN-  133 (315)
T ss_pred             eeccceEecceEEccCCceEEeccccceEEEEEecC--C--cEEEEEEecCCceEEEEecCCCceeecCCCcceeeeee-
Confidence            445788999999999999999999999999999988  6  78889999999999999999999999999999999999 


Q ss_pred             eCCCCCceeeEEEeccCcceEEEEECCC--CCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEE
Q psy11529         85 NNDDKKWKPTLVLLRINRAATCVKWSPL--ENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLL  162 (244)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l  162 (244)
                       .. +.+.....-..+...|.|+.|+|+  ..+|++++.|+++++||+++.+.    .....+|.+.++.++++|||.++
T Consensus       134 -t~-g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l----~~~~~gh~~~v~t~~vSpDGslc  207 (315)
T KOG0279|consen  134 -TL-GVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQL----RTTFIGHSGYVNTVTVSPDGSLC  207 (315)
T ss_pred             -ec-ccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcch----hhccccccccEEEEEECCCCCEE
Confidence             33 333333332233789999999998  67899999999999999999875    67778899999999999999999


Q ss_pred             EEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCCC
Q psy11529        163 GCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQV  242 (244)
Q Consensus       163 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~  242 (244)
                      ++|+.||.+.+||+                  ..++.++.+..    ...|.+++|+|+..+|+.+. +..|+|||++..
T Consensus       208 asGgkdg~~~LwdL------------------~~~k~lysl~a----~~~v~sl~fspnrywL~~at-~~sIkIwdl~~~  264 (315)
T KOG0279|consen  208 ASGGKDGEAMLWDL------------------NEGKNLYSLEA----FDIVNSLCFSPNRYWLCAAT-ATSIKIWDLESK  264 (315)
T ss_pred             ecCCCCceEEEEEc------------------cCCceeEeccC----CCeEeeEEecCCceeEeecc-CCceEEEeccch
Confidence            99999999999999                  66788887766    78999999999988777664 556999999764

>KOG0645|consensus

Probab=100.00  E-value=2.6e-37  Score=211.06  Aligned_cols=214  Identities=22%  Similarity=0.399  Sum_probs=190.9

Q ss_pred             EEeCCCceEEEEEcCC-CCeEEEecCCCeEEEeeeccCCCcceeeeee-ccCCCceEEEEeCCCCCeEEEEeCCccEEEE
Q psy11529          5 YSFGINPVTTHAWNNT-RQQLAFTPNNQEVHLYQYEKAANDWSQLDVL-DGHDLKVTGIDWAPNTNRIVTCSADRNAYVW   82 (244)
Q Consensus         5 ~~~~~~~v~~~~~~~~-~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw   82 (244)
                      .+.|.+.+..++|+|- |..||+++.|+.|++|+... ...+.+...+ .+|+..|.+++|+|.|++|++++.|.++.||
T Consensus        10 ~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~-~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw   88 (312)
T KOG0645|consen   10 LSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSS-GDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIW   88 (312)
T ss_pred             ecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCC-CCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEe
Confidence            3446889999999997 88999999999999999974 1445565555 4699999999999999999999999999999


Q ss_pred             eeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEE
Q psy11529         83 TQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLL  162 (244)
Q Consensus        83 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l  162 (244)
                      .  -..+++.....+.+|...|.+++|+++|++||+++.|+.|-||.+..+.. +.+.....+|...|..+.|+|...+|
T Consensus        89 ~--k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddE-fec~aVL~~HtqDVK~V~WHPt~dlL  165 (312)
T KOG0645|consen   89 K--KEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDE-FECIAVLQEHTQDVKHVIWHPTEDLL  165 (312)
T ss_pred             e--cCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCc-EEEEeeeccccccccEEEEcCCccee
Confidence            9  78888888889999999999999999999999999999999999995554 67778889999999999999999999


Q ss_pred             EEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCC
Q psy11529        163 GCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQ  240 (244)
Q Consensus       163 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~  240 (244)
                      ++++.|.+|++|+-.. +              ....+..++.+|   ...|.+++|++.|..|++++.|++++||-+.
T Consensus       166 ~S~SYDnTIk~~~~~~-d--------------ddW~c~~tl~g~---~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~  225 (312)
T KOG0645|consen  166 FSCSYDNTIKVYRDED-D--------------DDWECVQTLDGH---ENTVWSLAFDNIGSRLVSCSDDGTVSIWRLY  225 (312)
T ss_pred             EEeccCCeEEEEeecC-C--------------CCeeEEEEecCc---cceEEEEEecCCCceEEEecCCcceEeeeec
Confidence            9999999999998642 1              357889999999   8899999999999999999999999999854

>KOG0273|consensus

Probab=100.00  E-value=2e-38  Score=231.16  Aligned_cols=201  Identities=21%  Similarity=0.361  Sum_probs=180.7

Q ss_pred             CCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCCC
Q psy11529          9 INPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDD   88 (244)
Q Consensus         9 ~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~   88 (244)
                      ...|++++|+.+|..||+|+.||.+++|+..+     .++.++..|+++|.++.|+.+|.||++++.|+++.+||  ..+
T Consensus       235 nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G-----~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd--~~~  307 (524)
T KOG0273|consen  235 NKDVTSLDWNNDGTLLATGSEDGEARIWNKDG-----NLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWD--AHT  307 (524)
T ss_pred             cCCcceEEecCCCCeEEEeecCcEEEEEecCc-----hhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEe--ccC
Confidence            57899999999999999999999999999998     78889999999999999999999999999999999999  433


Q ss_pred             CCce---------------------------------------eeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEE
Q psy11529         89 KKWK---------------------------------------PTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCY  129 (244)
Q Consensus        89 ~~~~---------------------------------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d  129 (244)
                      ++..                                       +..++.+|.+.|.++.|+|.+.+|++++.|++++||.
T Consensus       308 g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs  387 (524)
T KOG0273|consen  308 GTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWS  387 (524)
T ss_pred             ceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeee
Confidence            3221                                       2234457899999999999999999999999999999


Q ss_pred             eecCCCceEEEeeecCCCCceeEEEecCCC---------CEEEEeeCCCeEEEEEeeecccccCCCCCCCCcccccccee
Q psy11529        130 FESENDWWVAKHIKKPIKSTITCLDWHPNN---------HLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCL  200 (244)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~---------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  200 (244)
                      ......    ...+..|...|..+.|+|+|         ..+++++.|++|++||+                  ..+.++
T Consensus       388 ~~~~~~----~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv------------------~~gv~i  445 (524)
T KOG0273|consen  388 MGQSNS----VHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDV------------------ESGVPI  445 (524)
T ss_pred             cCCCcc----hhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEc------------------cCCcee
Confidence            877653    56677888899999999965         37899999999999999                  789999


Q ss_pred             EEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCC
Q psy11529        201 VELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQ  241 (244)
Q Consensus       201 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~  241 (244)
                      +.+..|   ..+|.+++|+|+|+|+|+|+.||.|.+|+++.
T Consensus       446 ~~f~kH---~~pVysvafS~~g~ylAsGs~dg~V~iws~~~  483 (524)
T KOG0273|consen  446 HTLMKH---QEPVYSVAFSPNGRYLASGSLDGCVHIWSTKT  483 (524)
T ss_pred             EeeccC---CCceEEEEecCCCcEEEecCCCCeeEeccccc
Confidence            999999   99999999999999999999999999999875

>KOG0271|consensus

Probab=100.00  E-value=1.4e-38  Score=226.87  Aligned_cols=204  Identities=18%  Similarity=0.257  Sum_probs=172.5

Q ss_pred             eCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCC-----CCCeEEEEeCCccEEE
Q psy11529          7 FGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAP-----NTNRIVTCSADRNAYV   81 (244)
Q Consensus         7 ~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~d~~i~i   81 (244)
                      -|...|.|++|+|||+.||+|+.||+|++||.....   +.-..+.+|...|++++|.|     ..++|++++.||.++|
T Consensus       155 gH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~---~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrI  231 (480)
T KOG0271|consen  155 GHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQ---QIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRI  231 (480)
T ss_pred             CCccEEEEEEECCCcchhhccccCCeEEEecCCCCC---cccccccCcccceeEEeecccccCCCccceecccCCCCEEE
Confidence            468999999999999999999999999999986622   45667888888888888865     4567888888888888


Q ss_pred             Eeee------------------------------------------------------------------CCCC------
Q psy11529         82 WTQN------------------------------------------------------------------NDDK------   89 (244)
Q Consensus        82 wd~~------------------------------------------------------------------~~~~------   89 (244)
                      ||+.                                                                  ++++      
T Consensus       232 Wd~~~~~~~~~lsgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~  311 (480)
T KOG0271|consen  232 WDTKLGTCVRTLSGHTASVTCVRWGGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTG  311 (480)
T ss_pred             EEccCceEEEEeccCccceEEEEEcCCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhcccccccc
Confidence            8854                                                                  0000      


Q ss_pred             Cc--------------------------------------------eeeEEEeccCcceEEEEECCCCCeEEEeeCCCeE
Q psy11529         90 KW--------------------------------------------KPTLVLLRINRAATCVKWSPLENKFAAGSGARLI  125 (244)
Q Consensus        90 ~~--------------------------------------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i  125 (244)
                      ..                                            .+...+.+|..-|+.+.|+||++++|+++-|+.|
T Consensus       312 ~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSV  391 (480)
T KOG0271|consen  312 RKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSV  391 (480)
T ss_pred             ccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccce
Confidence            00                                            0011233567789999999999999999999999


Q ss_pred             EEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecC
Q psy11529        126 SVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNN  205 (244)
Q Consensus       126 ~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (244)
                      ++|+.++++.    ...+.+|-+.|..++|+.|.++|++|+.|.++++||+                  ++.+....+.+
T Consensus       392 kLW~g~tGk~----lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V------------------~tkKl~~DLpG  449 (480)
T KOG0271|consen  392 KLWDGRTGKF----LASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDV------------------RTKKLKQDLPG  449 (480)
T ss_pred             eeeeCCCcch----hhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEe------------------eeeeecccCCC
Confidence            9999999975    6677888899999999999999999999999999999                  66788888999


Q ss_pred             CCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEe
Q psy11529        206 SSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRM  238 (244)
Q Consensus       206 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd  238 (244)
                      |   ...|.++.|+|||..+++|+.|..+++|.
T Consensus       450 h---~DEVf~vDwspDG~rV~sggkdkv~~lw~  479 (480)
T KOG0271|consen  450 H---ADEVFAVDWSPDGQRVASGGKDKVLRLWR  479 (480)
T ss_pred             C---CceEEEEEecCCCceeecCCCceEEEeec
Confidence            9   99999999999999999999999999995

>KOG0279|consensus

Probab=100.00  E-value=2.4e-37  Score=211.97  Aligned_cols=212  Identities=16%  Similarity=0.194  Sum_probs=183.1

Q ss_pred             eeEEeCCCceEEEEEcCC-CCeEEEecCCCeEEEeeeccCCCcc-eeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEE
Q psy11529          3 EVYSFGINPVTTHAWNNT-RQQLAFTPNNQEVHLYQYEKAANDW-SQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAY   80 (244)
Q Consensus         3 ~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~v~v~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~   80 (244)
                      +.+..|++.|+.++..+. ...+++++.|..+.+|++..+..++ ...+.+++|...|..++.+++|++.++++.|+.++
T Consensus         9 ~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lr   88 (315)
T KOG0279|consen    9 GTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLR   88 (315)
T ss_pred             eeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEE
Confidence            456678999999999986 4578889999999999996522111 45788999999999999999999999999999999


Q ss_pred             EEeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCC--
Q psy11529         81 VWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPN--  158 (244)
Q Consensus        81 iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~--  158 (244)
                      +||  +.+++  ....+.+|...|.+++|+||.+.+++|+.|++|++|+......   .......+.+.|+++.|+|+  
T Consensus        89 lWD--l~~g~--~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck---~t~~~~~~~~WVscvrfsP~~~  161 (315)
T KOG0279|consen   89 LWD--LATGE--STRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCK---YTIHEDSHREWVSCVRFSPNES  161 (315)
T ss_pred             EEE--ecCCc--EEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEE---EEEecCCCcCcEEEEEEcCCCC
Confidence            999  77875  4556678999999999999999999999999999999887743   22222233789999999997  


Q ss_pred             CCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEe
Q psy11529        159 NHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRM  238 (244)
Q Consensus       159 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd  238 (244)
                      ..+|++++.|+++++||+                  ...+....+.+|   .+.++.+++||||.+.++|+.||.+.+||
T Consensus       162 ~p~Ivs~s~DktvKvWnl------------------~~~~l~~~~~gh---~~~v~t~~vSpDGslcasGgkdg~~~Lwd  220 (315)
T KOG0279|consen  162 NPIIVSASWDKTVKVWNL------------------RNCQLRTTFIGH---SGYVNTVTVSPDGSLCASGGKDGEAMLWD  220 (315)
T ss_pred             CcEEEEccCCceEEEEcc------------------CCcchhhccccc---cccEEEEEECCCCCEEecCCCCceEEEEE
Confidence            579999999999999999                  667778888898   99999999999999999999999999999


Q ss_pred             CCCC
Q psy11529        239 SQQV  242 (244)
Q Consensus       239 ~~~~  242 (244)
                      ++.-
T Consensus       221 L~~~  224 (315)
T KOG0279|consen  221 LNEG  224 (315)
T ss_pred             ccCC
Confidence            9853

>KOG0645|consensus

Probab=100.00  E-value=6.5e-37  Score=209.10  Aligned_cols=227  Identities=21%  Similarity=0.323  Sum_probs=187.3

Q ss_pred             eCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeC
Q psy11529          7 FGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNN   86 (244)
Q Consensus         7 ~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~   86 (244)
                      .|+..|++++|+|.|++||+|+.|.++.||.-.+  ++++++.++++|+..|.+++|+++|++||+++.|..|-||.+ .
T Consensus        59 ~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~--~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~-d  135 (312)
T KOG0645|consen   59 GHKRSVRSVAWSPHGRYLASASFDATVVIWKKED--GEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEI-D  135 (312)
T ss_pred             cchheeeeeeecCCCcEEEEeeccceEEEeecCC--CceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEe-c
Confidence            4789999999999999999999999999999988  788999999999999999999999999999999999999996 3


Q ss_pred             CCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEee
Q psy11529         87 DDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGS  166 (244)
Q Consensus        87 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~  166 (244)
                      +..++.....+..|...|..+.|+|...+|++++.|++|++|+-..+ .-+.+.....+|...|.+++|+|.|..|++++
T Consensus       136 eddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~d-ddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~s  214 (312)
T KOG0645|consen  136 EDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDD-DDWECVQTLDGHENTVWSLAFDNIGSRLVSCS  214 (312)
T ss_pred             CCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCC-CCeeEEEEecCccceEEEEEecCCCceEEEec
Confidence            56777777788899999999999999999999999999999988763 34778888899999999999999999999999


Q ss_pred             CCCeEEEEEeeecccccC--CCC-CCCC---------------------ccccccceeEE-ecCCCCCCCCeEEEEEecC
Q psy11529        167 TDFKVRVFSAYIKDIESA--PQS-TNWG---------------------SKSTLGNCLVE-LNNSSSGGGWIHSVAFSKD  221 (244)
Q Consensus       167 ~dg~i~i~d~~~~~~~~~--~~~-~~~~---------------------~~~~~~~~~~~-~~~~~~~~~~v~~~~~s~~  221 (244)
                      +|++++||..+..-....  ... ..|.                     ...+..+.+.. -..|   ...|++++|.|.
T Consensus       215 dD~tv~Iw~~~~~~~~~~sr~~Y~v~W~~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aH---e~dVNsV~w~p~  291 (312)
T KOG0645|consen  215 DDGTVSIWRLYTDLSGMHSRALYDVPWDNGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAH---EVDVNSVQWNPK  291 (312)
T ss_pred             CCcceEeeeeccCcchhcccceEeeeecccceEeccCCCEEEEEEecCCCCCchHHHHHhhhccc---ccccceEEEcCC
Confidence            999999999542111000  000 0111                     01112222221 2234   779999999994


Q ss_pred             -CCEEEEeeCCCcEEEEeCC
Q psy11529        222 -GNKLCWTSHDGSINVRMSQ  240 (244)
Q Consensus       222 -~~~l~~~~~dg~i~vwd~~  240 (244)
                       ...|++|++||.|++|.+.
T Consensus       292 ~~~~L~s~~DDG~v~~W~l~  311 (312)
T KOG0645|consen  292 VSNRLASGGDDGIVNFWELE  311 (312)
T ss_pred             CCCceeecCCCceEEEEEec
Confidence             6689999999999999875

>KOG0263|consensus

Probab=100.00  E-value=8.8e-38  Score=240.31  Aligned_cols=210  Identities=21%  Similarity=0.333  Sum_probs=186.0

Q ss_pred             eEEeC--CCceEEEEEcCCCCeEEEecCCCeEEEeeeccCC---------------------------CcceeeeeeccC
Q psy11529          4 VYSFG--INPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAA---------------------------NDWSQLDVLDGH   54 (244)
Q Consensus         4 ~~~~~--~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~---------------------------~~~~~~~~~~~~   54 (244)
                      +++++  ...++|..|++|+++||.|-.|..|++|.+....                           ..-....++.+|
T Consensus       371 ~YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH  450 (707)
T KOG0263|consen  371 MYTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGH  450 (707)
T ss_pred             EEEEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecC
Confidence            34444  6789999999999999999999999999987300                           001233457899


Q ss_pred             CCceEEEEeCCCCCeEEEEeCCccEEEEeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCC
Q psy11529         55 DLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESEN  134 (244)
Q Consensus        55 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~  134 (244)
                      .++|..+.|+|+.++|++++.|+++++|.  +.+...  .....+|..+|+.+.|+|.|-++|+++.|++-++|..+...
T Consensus       451 ~GPVyg~sFsPd~rfLlScSED~svRLWs--l~t~s~--~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~  526 (707)
T KOG0263|consen  451 SGPVYGCSFSPDRRFLLSCSEDSSVRLWS--LDTWSC--LVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNK  526 (707)
T ss_pred             CCceeeeeecccccceeeccCCcceeeee--ccccee--EEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCC
Confidence            99999999999999999999999999999  667654  34446899999999999999999999999999999999876


Q ss_pred             CceEEEeeecCCCCceeEEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeE
Q psy11529        135 DWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIH  214 (244)
Q Consensus       135 ~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  214 (244)
                      +    ...+.+|.+.|.|+.|+|++.|+++|+.|.++++||+                  .++..+..|.+|   .++|.
T Consensus       527 P----lRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv------------------~~G~~VRiF~GH---~~~V~  581 (707)
T KOG0263|consen  527 P----LRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDV------------------STGNSVRIFTGH---KGPVT  581 (707)
T ss_pred             c----hhhhcccccccceEEECCcccccccCCCCceEEEEEc------------------CCCcEEEEecCC---CCceE
Confidence            5    6778889999999999999999999999999999999                  789999999999   99999


Q ss_pred             EEEEecCCCEEEEeeCCCcEEEEeCCCC
Q psy11529        215 SVAFSKDGNKLCWTSHDGSINVRMSQQV  242 (244)
Q Consensus       215 ~~~~s~~~~~l~~~~~dg~i~vwd~~~~  242 (244)
                      +++|||+|++|++|+.||.|.+||+.+.
T Consensus       582 al~~Sp~Gr~LaSg~ed~~I~iWDl~~~  609 (707)
T KOG0263|consen  582 ALAFSPCGRYLASGDEDGLIKIWDLANG  609 (707)
T ss_pred             EEEEcCCCceEeecccCCcEEEEEcCCC
Confidence            9999999999999999999999999874

>KOG0286|consensus

Probab=100.00  E-value=1.1e-36  Score=210.20  Aligned_cols=207  Identities=13%  Similarity=0.231  Sum_probs=183.5

Q ss_pred             EEeCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEee
Q psy11529          5 YSFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQ   84 (244)
Q Consensus         5 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~   84 (244)
                      ..-|.+.|.++.|++|.++|++++.||.+.|||.-+  .  ...+.+.-...-|..++|+|+|+++|.|+-|+...||++
T Consensus        51 LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~T--t--nK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~l  126 (343)
T KOG0286|consen   51 LKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFT--T--NKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPL  126 (343)
T ss_pred             ecccccceeeeEecCCcCeEEeeccCCeEEEEEccc--c--cceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEec
Confidence            345689999999999999999999999999999865  3  455566656788999999999999999999999999995


Q ss_pred             eCC--CCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecC-CCCE
Q psy11529         85 NND--DKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHP-NNHL  161 (244)
Q Consensus        85 ~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~  161 (244)
                      ..+  .+.......+.+|.+.+.|+.|-+| ..|++++.|.+..+||+++++.    ...+.+|.+.|.+++++| +++.
T Consensus       127 s~~d~~g~~~v~r~l~gHtgylScC~f~dD-~~ilT~SGD~TCalWDie~g~~----~~~f~GH~gDV~slsl~p~~~nt  201 (343)
T KOG0286|consen  127 STRDAEGNVRVSRELAGHTGYLSCCRFLDD-NHILTGSGDMTCALWDIETGQQ----TQVFHGHTGDVMSLSLSPSDGNT  201 (343)
T ss_pred             ccccccccceeeeeecCccceeEEEEEcCC-CceEecCCCceEEEEEcccceE----EEEecCCcccEEEEecCCCCCCe
Confidence            323  2223334557889999999999884 6789999999999999999975    677889999999999999 9999


Q ss_pred             EEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCC
Q psy11529        162 LGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQ  241 (244)
Q Consensus       162 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~  241 (244)
                      +++|+-|+..++||+                  +.+.+.++|.+|   ...|+++.|.|+|.-+++|++|++.++||++.
T Consensus       202 FvSg~cD~~aklWD~------------------R~~~c~qtF~gh---esDINsv~ffP~G~afatGSDD~tcRlyDlRa  260 (343)
T KOG0286|consen  202 FVSGGCDKSAKLWDV------------------RSGQCVQTFEGH---ESDINSVRFFPSGDAFATGSDDATCRLYDLRA  260 (343)
T ss_pred             EEecccccceeeeec------------------cCcceeEeeccc---ccccceEEEccCCCeeeecCCCceeEEEeecC
Confidence            999999999999999                  678999999999   99999999999999999999999999999986

>KOG0315|consensus

Probab=100.00  E-value=6.9e-37  Score=206.84  Aligned_cols=209  Identities=17%  Similarity=0.212  Sum_probs=179.9

Q ss_pred             CCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCC
Q psy11529          8 GINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNND   87 (244)
Q Consensus         8 ~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~   87 (244)
                      ..+.|+.+...||++.||+++. -.|++||+..  ++..++.++.+|...|+++.|..+|+.+++|++||+++|||  ++
T Consensus        39 ~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S--~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWd--lR  113 (311)
T KOG0315|consen   39 PDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNS--NNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWD--LR  113 (311)
T ss_pred             CccceeeEEEcCCcchhhhccC-CeeEEEEccC--CCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEe--cc
Confidence            3788999999999999999875 6899999988  55579999999999999999999999999999999999999  55


Q ss_pred             CCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEeeC
Q psy11529         88 DKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGST  167 (244)
Q Consensus        88 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~  167 (244)
                      ....   .....+.++|+++..+|+...|++|..+|.|++||+.....   ...........+.++...|||.+++.+..
T Consensus       114 ~~~~---qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c---~~~liPe~~~~i~sl~v~~dgsml~a~nn  187 (311)
T KOG0315|consen  114 SLSC---QRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSC---THELIPEDDTSIQSLTVMPDGSMLAAANN  187 (311)
T ss_pred             Cccc---chhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCcc---ccccCCCCCcceeeEEEcCCCcEEEEecC
Confidence            5432   22345789999999999999999999999999999998854   22233334478999999999999999999


Q ss_pred             CCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCCC
Q psy11529        168 DFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQV  242 (244)
Q Consensus       168 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~  242 (244)
                      .|..++|++-..+..            ...+++..++.|   .+.+..+.+|||+++|+++|.|.+++||+.+++
T Consensus       188 kG~cyvW~l~~~~~~------------s~l~P~~k~~ah---~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~  247 (311)
T KOG0315|consen  188 KGNCYVWRLLNHQTA------------SELEPVHKFQAH---NGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF  247 (311)
T ss_pred             CccEEEEEccCCCcc------------ccceEhhheecc---cceEEEEEECCCCcEEEeecCCceEEEEecCCc
Confidence            999999998543322            345677788898   999999999999999999999999999999887

>KOG0315|consensus

Probab=100.00  E-value=1.9e-36  Score=204.68  Aligned_cols=210  Identities=16%  Similarity=0.164  Sum_probs=178.4

Q ss_pred             EEeCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEee
Q psy11529          5 YSFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQ   84 (244)
Q Consensus         5 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~   84 (244)
                      +..|...|+++.|..+|+.+++|++||+++|||+..  .  .+.+.++ |..+|+++..+|+...|++|..+|.|++|| 
T Consensus        79 ~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~--~--~~qR~~~-~~spVn~vvlhpnQteLis~dqsg~irvWD-  152 (311)
T KOG0315|consen   79 FEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRS--L--SCQRNYQ-HNSPVNTVVLHPNQTELISGDQSGNIRVWD-  152 (311)
T ss_pred             EeccCCceEEEEEeecCeEEEecCCCceEEEEeccC--c--ccchhcc-CCCCcceEEecCCcceEEeecCCCcEEEEE-
Confidence            455678999999999999999999999999999987  2  4555555 889999999999999999999999999999 


Q ss_pred             eCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCc--eEEEeeecCCCCceeEEEecCCCCEE
Q psy11529         85 NNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDW--WVAKHIKKPIKSTITCLDWHPNNHLL  162 (244)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~--~~~~~~~~~~~~~v~~~~~~p~~~~l  162 (244)
                       +....+...+. +.....+.++...|+|.+++.+...|..++|++-..+..  ..+...+..|.+.+..+.+|||+++|
T Consensus       153 -l~~~~c~~~li-Pe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~l  230 (311)
T KOG0315|consen  153 -LGENSCTHELI-PEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYL  230 (311)
T ss_pred             -ccCCccccccC-CCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEE
Confidence             55554444443 455678999999999999999999999999999775432  23455667889999999999999999


Q ss_pred             EEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCCC
Q psy11529        163 GCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQV  242 (244)
Q Consensus       163 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~  242 (244)
                      |+++.|.+++||+...                 ..+....+.+|   ...+..++||.||+||++++.|+.+++|+++.-
T Consensus       231 at~ssdktv~iwn~~~-----------------~~kle~~l~gh---~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~  290 (311)
T KOG0315|consen  231 ATCSSDKTVKIWNTDD-----------------FFKLELVLTGH---QRWVWDCAFSADGEYLVTASSDHTARLWDLSAG  290 (311)
T ss_pred             EeecCCceEEEEecCC-----------------ceeeEEEeecC---CceEEeeeeccCccEEEecCCCCceeecccccC
Confidence            9999999999999831                 12455667788   889999999999999999999999999999753

>KOG0286|consensus

Probab=100.00  E-value=6e-36  Score=206.48  Aligned_cols=202  Identities=18%  Similarity=0.283  Sum_probs=180.7

Q ss_pred             EEeCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCC-CCCeEEEEeCCccEEEEe
Q psy11529          5 YSFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAP-NTNRIVTCSADRNAYVWT   83 (244)
Q Consensus         5 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd   83 (244)
                      ...|.+-+.|+.|-+| .+|++++.|.+..+||+++  +  +....+.+|.+.|.+++++| +++.+++|+.|+..++||
T Consensus       141 l~gHtgylScC~f~dD-~~ilT~SGD~TCalWDie~--g--~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD  215 (343)
T KOG0286|consen  141 LAGHTGYLSCCRFLDD-NHILTGSGDMTCALWDIET--G--QQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWD  215 (343)
T ss_pred             ecCccceeEEEEEcCC-CceEecCCCceEEEEEccc--c--eEEEEecCCcccEEEEecCCCCCCeEEecccccceeeee
Confidence            3446888999999885 4678999999999999988  6  88999999999999999999 999999999999999999


Q ss_pred             eeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEE
Q psy11529         84 QNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLG  163 (244)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~  163 (244)
                        .+.+..  ...+.+|...|+++.|.|+|.-+++|++|++.++||++..+.  ...........+|++++|+..|++|.
T Consensus       216 --~R~~~c--~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~--~a~ys~~~~~~gitSv~FS~SGRlLf  289 (343)
T KOG0286|consen  216 --VRSGQC--VQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQE--LAVYSHDSIICGITSVAFSKSGRLLF  289 (343)
T ss_pred             --ccCcce--eEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcE--EeeeccCcccCCceeEEEcccccEEE
Confidence              677764  445578999999999999999999999999999999999876  22233344457899999999999999


Q ss_pred             EeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEe
Q psy11529        164 CGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRM  238 (244)
Q Consensus       164 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd  238 (244)
                      .|..|.++.+||.                  -.++.+..+.+|   ++.|+++..+|||.-+++|+.|..++||.
T Consensus       290 agy~d~~c~vWDt------------------lk~e~vg~L~GH---eNRvScl~~s~DG~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  290 AGYDDFTCNVWDT------------------LKGERVGVLAGH---ENRVSCLGVSPDGMAVATGSWDSTLRIWA  343 (343)
T ss_pred             eeecCCceeEeec------------------cccceEEEeecc---CCeeEEEEECCCCcEEEecchhHheeecC
Confidence            9999999999998                  678889999999   99999999999999999999999999994

>KOG0266|consensus

Probab=100.00  E-value=2.1e-35  Score=229.87  Aligned_cols=205  Identities=22%  Similarity=0.319  Sum_probs=178.4

Q ss_pred             CCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeC-C
Q psy11529          9 INPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNN-D   87 (244)
Q Consensus         9 ~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~-~   87 (244)
                      ...|.++.|+++|+.+++++.++.+++|+...  ........+.+|...|.+++|+|+++++++++.|+++++||  + .
T Consensus       159 ~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~--~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd--~~~  234 (456)
T KOG0266|consen  159 CPSVTCVDFSPDGRALAAASSDGLIRIWKLEG--IKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWD--LKD  234 (456)
T ss_pred             cCceEEEEEcCCCCeEEEccCCCcEEEeeccc--ccchhhccccccccceeeeEECCCCcEEEEecCCceEEEee--ccC
Confidence            68899999999999999999999999999955  31125667789999999999999999999999999999999  5 3


Q ss_pred             CCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEeeC
Q psy11529         88 DKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGST  167 (244)
Q Consensus        88 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~  167 (244)
                      .+.  ....+.+|...|++++|+|+++.+++|+.|++|+|||+++++    +......|.+.|++++|++++++|++++.
T Consensus       235 ~~~--~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~----~~~~l~~hs~~is~~~f~~d~~~l~s~s~  308 (456)
T KOG0266|consen  235 DGR--NLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGE----CVRKLKGHSDGISGLAFSPDGNLLVSASY  308 (456)
T ss_pred             CCe--EEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCe----EEEeeeccCCceEEEEECCCCCEEEEcCC
Confidence            333  345557999999999999999999999999999999999965    47778889999999999999999999999


Q ss_pred             CCeEEEEEeeecccccCCCCCCCCccccccc--eeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCCC
Q psy11529        168 DFKVRVFSAYIKDIESAPQSTNWGSKSTLGN--CLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQV  242 (244)
Q Consensus       168 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~  242 (244)
                      |+.|++||+                  ..+.  ++..+..+.... ++++++|+|++++|++++.|+.+++||++..
T Consensus       309 d~~i~vwd~------------------~~~~~~~~~~~~~~~~~~-~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~  366 (456)
T KOG0266|consen  309 DGTIRVWDL------------------ETGSKLCLKLLSGAENSA-PVTSVQFSPNGKYLLSASLDRTLKLWDLRSG  366 (456)
T ss_pred             CccEEEEEC------------------CCCceeeeecccCCCCCC-ceeEEEECCCCcEEEEecCCCeEEEEEccCC
Confidence            999999999                  4555  456666652112 6999999999999999999999999999854

>KOG0284|consensus

Probab=100.00  E-value=3.2e-37  Score=221.36  Aligned_cols=200  Identities=22%  Similarity=0.372  Sum_probs=177.2

Q ss_pred             CCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCCC
Q psy11529          9 INPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDD   88 (244)
Q Consensus         9 ~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~   88 (244)
                      +-+|..+.|.|+|+.|++|+..|.+.+|+...    +.-...+..|..+|.++.|++++.++++|..+|.|++|+  ..-
T Consensus        96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~----fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWq--pnm  169 (464)
T KOG0284|consen   96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTS----FNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQ--PNM  169 (464)
T ss_pred             ccceeeEEEcCCCceeEeecccccEEEecCce----eeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecc--cch
Confidence            56899999999999999999999999999855    133445678999999999999999999999999999999  433


Q ss_pred             CCceeeEEEec-cCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEeeC
Q psy11529         89 KKWKPTLVLLR-INRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGST  167 (244)
Q Consensus        89 ~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~  167 (244)
                      ..   ...+.. |...|++++|+|++..++++++|++|+|||....+.    .....+|.-.|.+++|+|...+|++++.
T Consensus       170 nn---Vk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~ke----e~vL~GHgwdVksvdWHP~kgLiasgsk  242 (464)
T KOG0284|consen  170 NN---VKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKE----ERVLRGHGWDVKSVDWHPTKGLIASGSK  242 (464)
T ss_pred             hh---hHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCch----hheeccCCCCcceeccCCccceeEEccC
Confidence            32   222233 458999999999999999999999999999998876    4455888899999999999999999999


Q ss_pred             CCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCCC
Q psy11529        168 DFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQV  242 (244)
Q Consensus       168 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~  242 (244)
                      |..|++||.                  +++.++.++..|   ...|..+.|+|++++|+++|.|..++++|++++
T Consensus       243 DnlVKlWDp------------------rSg~cl~tlh~H---KntVl~~~f~~n~N~Llt~skD~~~kv~DiR~m  296 (464)
T KOG0284|consen  243 DNLVKLWDP------------------RSGSCLATLHGH---KNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTM  296 (464)
T ss_pred             CceeEeecC------------------CCcchhhhhhhc---cceEEEEEEcCCCCeeEEccCCceEEEEehhHh
Confidence            999999999                  789999999999   999999999999999999999999999999854

>KOG0284|consensus

Probab=100.00  E-value=1.1e-36  Score=218.55  Aligned_cols=203  Identities=19%  Similarity=0.284  Sum_probs=179.3

Q ss_pred             EeCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCC-CceEEEEeCCCCCeEEEEeCCccEEEEee
Q psy11529          6 SFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHD-LKVTGIDWAPNTNRIVTCSADRNAYVWTQ   84 (244)
Q Consensus         6 ~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d~~i~iwd~   84 (244)
                      ..|..+|+++.|++++.++++|+.+|.|++|+..-     ..++.+.+|. ..|++++|+|+...|+++++||+|+||| 
T Consensus       135 QaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnm-----nnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWd-  208 (464)
T KOG0284|consen  135 QAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNM-----NNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWD-  208 (464)
T ss_pred             hhhcccceeEEEccCCCEEEEcCCCceEEecccch-----hhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEe-
Confidence            45799999999999999999999999999999876     4555666554 9999999999999999999999999999 


Q ss_pred             eCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEE
Q psy11529         85 NNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGC  164 (244)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~  164 (244)
                       ....+.  ...+.+|.-.|.+++|+|...++++++.|..|++||.+++..    ......|+..|..+.|+|++++|++
T Consensus       209 -f~~~ke--e~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~c----l~tlh~HKntVl~~~f~~n~N~Llt  281 (464)
T KOG0284|consen  209 -FRMPKE--ERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSC----LATLHGHKNTVLAVKFNPNGNWLLT  281 (464)
T ss_pred             -ccCCch--hheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcch----hhhhhhccceEEEEEEcCCCCeeEE
Confidence             544443  334478999999999999999999999999999999999975    6667789999999999999999999


Q ss_pred             eeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEec-CCCEEEEeeCCCcEEEEeCCCC
Q psy11529        165 GSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSK-DGNKLCWTSHDGSINVRMSQQV  242 (244)
Q Consensus       165 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~  242 (244)
                      ++.|..++++|+                  ++-+.+..+++|   ...++++.|+| ...+|.+|+.||.|..|.+...
T Consensus       282 ~skD~~~kv~Di------------------R~mkEl~~~r~H---kkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~  339 (464)
T KOG0284|consen  282 GSKDQSCKVFDI------------------RTMKELFTYRGH---KKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLE  339 (464)
T ss_pred             ccCCceEEEEeh------------------hHhHHHHHhhcc---hhhheeeccccccccceeeccCCCceEEEecccc
Confidence            999999999999                  456778889999   99999999999 5558889999999999998743

>KOG0266|consensus

Probab=100.00  E-value=4.3e-34  Score=222.56  Aligned_cols=209  Identities=20%  Similarity=0.257  Sum_probs=177.5

Q ss_pred             eCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeC
Q psy11529          7 FGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNN   86 (244)
Q Consensus         7 ~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~   86 (244)
                      -|...|.+++|+|+++++++++.|++|+|||+... +  ..++++++|...|++++|+|+++++++|+.|++|++||  .
T Consensus       201 ~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~-~--~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd--~  275 (456)
T KOG0266|consen  201 GHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDD-G--RNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWD--V  275 (456)
T ss_pred             ccccceeeeEECCCCcEEEEecCCceEEEeeccCC-C--eEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEe--c
Confidence            36889999999999999999999999999999442 2  78899999999999999999999999999999999999  7


Q ss_pred             CCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCC--ceeEEEecCCCCEEEE
Q psy11529         87 DDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKS--TITCLDWHPNNHLLGC  164 (244)
Q Consensus        87 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~--~v~~~~~~p~~~~l~~  164 (244)
                      ++++.  ...+..|...|.+++|++++++|++++.|+.|++||+.++...  +......+..  .++.+.|+|++.++++
T Consensus       276 ~~~~~--~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~--~~~~~~~~~~~~~~~~~~fsp~~~~ll~  351 (456)
T KOG0266|consen  276 RTGEC--VRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKL--CLKLLSGAENSAPVTSVQFSPNGKYLLS  351 (456)
T ss_pred             cCCeE--EEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCcee--eeecccCCCCCCceeEEEECCCCcEEEE
Confidence            77664  4455789999999999999999999999999999999998731  1223333322  6999999999999999


Q ss_pred             eeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCCC
Q psy11529        165 GSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQV  242 (244)
Q Consensus       165 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~  242 (244)
                      ++.|+.+++||+                  ..+.....+.+|......+.+...++.++++++|+.|+.|.+||+.+.
T Consensus       352 ~~~d~~~~~w~l------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~  411 (456)
T KOG0266|consen  352 ASLDRTLKLWDL------------------RSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSG  411 (456)
T ss_pred             ecCCCeEEEEEc------------------cCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCcc
Confidence            999999999999                  667888888887310014455566789999999999999999999864

>KOG0277|consensus

Probab=100.00  E-value=1e-34  Score=196.86  Aligned_cols=208  Identities=22%  Similarity=0.330  Sum_probs=175.8

Q ss_pred             eeEEeC-CCceEEEEEcCCC-CeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCC-CCCeEEEEeCCccE
Q psy11529          3 EVYSFG-INPVTTHAWNNTR-QQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAP-NTNRIVTCSADRNA   79 (244)
Q Consensus         3 ~~~~~~-~~~v~~~~~~~~~-~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i   79 (244)
                      |+.++. .+.+..++|+++. +.+++++.||.+++||+..++   .+++.++.|+..|.++.|++ +++.+++++.|++|
T Consensus        53 e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s---~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~Ti  129 (311)
T KOG0277|consen   53 ECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPS---KPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTI  129 (311)
T ss_pred             EEEeeecccceeEeeecCCCcceEEEEecCceEEEeccCCCC---cchhHHHhhhhheEEeccccccceeEEeeccCCce
Confidence            334443 7889999999954 567788889999999976543   68999999999999999999 66778888999999


Q ss_pred             EEEeeeCCCCCceeeEEEeccCcceEEEEECCC-CCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecC-
Q psy11529         80 YVWTQNNDDKKWKPTLVLLRINRAATCVKWSPL-ENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHP-  157 (244)
Q Consensus        80 ~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p-  157 (244)
                      ++|+  ...++.  ..++.+|...|...+|+|. ++.+++++.|+++++||++....    ......|...+.++.|+. 
T Consensus       130 KLW~--~~r~~S--v~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk----~~~i~ah~~Eil~cdw~ky  201 (311)
T KOG0277|consen  130 KLWD--PNRPNS--VQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGK----FMSIEAHNSEILCCDWSKY  201 (311)
T ss_pred             Eeec--CCCCcc--eEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCc----eeEEEeccceeEeeccccc
Confidence            9999  444443  4456789999999999996 78999999999999999998865    333677888999999998 


Q ss_pred             CCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCC-CEEEEeeCCCcEEE
Q psy11529        158 NNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDG-NKLCWTSHDGSINV  236 (244)
Q Consensus       158 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~v  236 (244)
                      +.+.++||+.|+.|+.||+|                 ....++.++.+|   .-.|+.++|||.. .+|++++.|-+++|
T Consensus       202 ~~~vl~Tg~vd~~vr~wDir-----------------~~r~pl~eL~gh---~~AVRkvk~Sph~~~lLaSasYDmT~ri  261 (311)
T KOG0277|consen  202 NHNVLATGGVDNLVRGWDIR-----------------NLRTPLFELNGH---GLAVRKVKFSPHHASLLASASYDMTVRI  261 (311)
T ss_pred             CCcEEEecCCCceEEEEehh-----------------hccccceeecCC---ceEEEEEecCcchhhHhhhccccceEEe
Confidence            56799999999999999997                 345678889999   9999999999954 48999999999999


Q ss_pred             EeCCC
Q psy11529        237 RMSQQ  241 (244)
Q Consensus       237 wd~~~  241 (244)
                      ||...
T Consensus       262 w~~~~  266 (311)
T KOG0277|consen  262 WDPER  266 (311)
T ss_pred             ccccc
Confidence            99874

>KOG0295|consensus

Probab=100.00  E-value=7.4e-35  Score=206.46  Aligned_cols=204  Identities=20%  Similarity=0.370  Sum_probs=185.2

Q ss_pred             eCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeC
Q psy11529          7 FGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNN   86 (244)
Q Consensus         7 ~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~   86 (244)
                      -|.+.|.+++|+..|++|++++.|-.+++||.++  - ++++..+.+|+..|.++.|-|.|.++++++.|.+|+.|+  .
T Consensus       148 GHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~--~-~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We--~  222 (406)
T KOG0295|consen  148 GHTDSVFDISFDASGKYLATCSSDLSAKLWDFDT--F-FRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWE--C  222 (406)
T ss_pred             ccccceeEEEEecCccEEEecCCccchhheeHHH--H-HHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEe--c
Confidence            4577899999999999999999999999999976  2 478888999999999999999999999999999999999  7


Q ss_pred             CCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCC--------
Q psy11529         87 DDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPN--------  158 (244)
Q Consensus        87 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~--------  158 (244)
                      .++-++  ..+.+|...|..++.+.||..+|+++.|.++++|-+.+.+.    +.....|+.++.+++|.|.        
T Consensus       223 ~tg~cv--~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~----k~~lR~hEh~vEci~wap~~~~~~i~~  296 (406)
T KOG0295|consen  223 DTGYCV--KTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQC----KAELREHEHPVECIAWAPESSYPSISE  296 (406)
T ss_pred             ccceeE--EeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchh----hhhhhccccceEEEEecccccCcchhh
Confidence            888754  44568889999999999999999999999999999998864    5667778889999999773        


Q ss_pred             -------CCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCC
Q psy11529        159 -------NHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHD  231 (244)
Q Consensus       159 -------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d  231 (244)
                             ++++++++.|++|++||+                  .++.++.++.+|   ...|+.++|+|.|+||+++.+|
T Consensus       297 at~~~~~~~~l~s~SrDktIk~wdv------------------~tg~cL~tL~gh---dnwVr~~af~p~Gkyi~ScaDD  355 (406)
T KOG0295|consen  297 ATGSTNGGQVLGSGSRDKTIKIWDV------------------STGMCLFTLVGH---DNWVRGVAFSPGGKYILSCADD  355 (406)
T ss_pred             ccCCCCCccEEEeecccceEEEEec------------------cCCeEEEEEecc---cceeeeeEEcCCCeEEEEEecC
Confidence                   258999999999999999                  889999999999   9999999999999999999999


Q ss_pred             CcEEEEeCCCC
Q psy11529        232 GSINVRMSQQV  242 (244)
Q Consensus       232 g~i~vwd~~~~  242 (244)
                      +++++||+++.
T Consensus       356 ktlrvwdl~~~  366 (406)
T KOG0295|consen  356 KTLRVWDLKNL  366 (406)
T ss_pred             CcEEEEEeccc
Confidence            99999999875

>PTZ00421 coronin; Provisional

Probab=100.00  E-value=4.3e-33  Score=216.57  Aligned_cols=212  Identities=15%  Similarity=0.140  Sum_probs=165.8

Q ss_pred             eEEeCCCceEEEEEcC-CCCeEEEecCCCeEEEeeeccCCC---cceeeeeeccCCCceEEEEeCCCC-CeEEEEeCCcc
Q psy11529          4 VYSFGINPVTTHAWNN-TRQQLAFTPNNQEVHLYQYEKAAN---DWSQLDVLDGHDLKVTGIDWAPNT-NRIVTCSADRN   78 (244)
Q Consensus         4 ~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~v~~~~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~   78 (244)
                      +...|.++|.+++|+| ++++|++|+.|++|++|++.....   ...++..+.+|...|.+++|+|++ .+|++++.|++
T Consensus        70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dgt  149 (493)
T PTZ00421         70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMV  149 (493)
T ss_pred             eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCE
Confidence            3456789999999999 889999999999999999965210   113567789999999999999975 68999999999


Q ss_pred             EEEEeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCC-ceeEEEecC
Q psy11529         79 AYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKS-TITCLDWHP  157 (244)
Q Consensus        79 i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~-~v~~~~~~p  157 (244)
                      |+|||  +.+++.  ...+..|...|.+++|+|++.+|++++.|+.|++||+++++.    ......|.+ ....+.|.+
T Consensus       150 VrIWD--l~tg~~--~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~----v~tl~~H~~~~~~~~~w~~  221 (493)
T PTZ00421        150 VNVWD--VERGKA--VEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTI----VSSVEAHASAKSQRCLWAK  221 (493)
T ss_pred             EEEEE--CCCCeE--EEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcE----EEEEecCCCCcceEEEEcC
Confidence            99999  677653  334467888999999999999999999999999999998764    233445544 345788999


Q ss_pred             CCCEEEEee----CCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEee-CCC
Q psy11529        158 NNHLLGCGS----TDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTS-HDG  232 (244)
Q Consensus       158 ~~~~l~~~~----~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg  232 (244)
                      ++..+++++    .|+.|++||++.                 ...++.....+.  ...+....|++++++|++++ .|+
T Consensus       222 ~~~~ivt~G~s~s~Dr~VklWDlr~-----------------~~~p~~~~~~d~--~~~~~~~~~d~d~~~L~lggkgDg  282 (493)
T PTZ00421        222 RKDLIITLGCSKSQQRQIMLWDTRK-----------------MASPYSTVDLDQ--SSALFIPFFDEDTNLLYIGSKGEG  282 (493)
T ss_pred             CCCeEEEEecCCCCCCeEEEEeCCC-----------------CCCceeEeccCC--CCceEEEEEcCCCCEEEEEEeCCC
Confidence            887777654    478999999852                 123333333321  44566778999999998887 599


Q ss_pred             cEEEEeCCCC
Q psy11529        233 SINVRMSQQV  242 (244)
Q Consensus       233 ~i~vwd~~~~  242 (244)
                      .|++||+.+.
T Consensus       283 ~Iriwdl~~~  292 (493)
T PTZ00421        283 NIRCFELMNE  292 (493)
T ss_pred             eEEEEEeeCC
Confidence            9999999864

>KOG0640|consensus

Probab=100.00  E-value=4.8e-35  Score=204.06  Aligned_cols=217  Identities=13%  Similarity=0.236  Sum_probs=181.0

Q ss_pred             EEeCCCceEEEEEcCCCCeEEEecCCCeEEEeeecc------C-----C---CcceeeeeeccCCCceEEEEeCCCCCeE
Q psy11529          5 YSFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEK------A-----A---NDWSQLDVLDGHDLKVTGIDWAPNTNRI   70 (244)
Q Consensus         5 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~------~-----~---~~~~~~~~~~~~~~~v~~~~~~~~~~~l   70 (244)
                      .+.|+.++.+.+|+|||.++|+|+.|-.|+|+|++.      +     +   ...-.++++-.|...|+++.|+|....|
T Consensus       108 lt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~IL  187 (430)
T KOG0640|consen  108 LTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETIL  187 (430)
T ss_pred             EeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheE
Confidence            456799999999999999999999999999999872      0     0   1112456777899999999999999999


Q ss_pred             EEEeCCccEEEEeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCce
Q psy11529         71 VTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTI  150 (244)
Q Consensus        71 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v  150 (244)
                      ++++.|++|+++|  ......+..+........|.++.|+|.|.+|++|....++++||+++.+. +........|.+.|
T Consensus       188 iS~srD~tvKlFD--fsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qc-fvsanPd~qht~ai  264 (430)
T KOG0640|consen  188 ISGSRDNTVKLFD--FSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQC-FVSANPDDQHTGAI  264 (430)
T ss_pred             EeccCCCeEEEEe--cccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeE-eeecCcccccccce
Confidence            9999999999999  44433333333344567899999999999999999999999999999876 33334556788999


Q ss_pred             eEEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeC
Q psy11529        151 TCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSH  230 (244)
Q Consensus       151 ~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~  230 (244)
                      +++.+++.+++.++++.||.|++||-                  -..+++.++...|. +..|.+..|..+|+|+++++.
T Consensus       265 ~~V~Ys~t~~lYvTaSkDG~IklwDG------------------VS~rCv~t~~~AH~-gsevcSa~Ftkn~kyiLsSG~  325 (430)
T KOG0640|consen  265 TQVRYSSTGSLYVTASKDGAIKLWDG------------------VSNRCVRTIGNAHG-GSEVCSAVFTKNGKYILSSGK  325 (430)
T ss_pred             eEEEecCCccEEEEeccCCcEEeecc------------------ccHHHHHHHHhhcC-CceeeeEEEccCCeEEeecCC
Confidence            99999999999999999999999997                  56777777754321 678999999999999999999


Q ss_pred             CCcEEEEeCCCCC
Q psy11529        231 DGSINVRMSQQVL  243 (244)
Q Consensus       231 dg~i~vwd~~~~~  243 (244)
                      |..+++|.+.+-.
T Consensus       326 DS~vkLWEi~t~R  338 (430)
T KOG0640|consen  326 DSTVKLWEISTGR  338 (430)
T ss_pred             cceeeeeeecCCc
Confidence            9999999998654

>KOG0265|consensus

Probab=100.00  E-value=4.2e-34  Score=197.99  Aligned_cols=207  Identities=15%  Similarity=0.173  Sum_probs=179.0

Q ss_pred             EEeCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEee
Q psy11529          5 YSFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQ   84 (244)
Q Consensus         5 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~   84 (244)
                      ..-|++.|..+.|+|+|..||+|+.|..|.+|++.++.   +....+++|.++|..+.|.++++.+++++.|.+++.|| 
T Consensus        43 l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdc---eN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD-  118 (338)
T KOG0265|consen   43 LPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDC---ENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWD-  118 (338)
T ss_pred             cCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccc---cceeeeccccceeEeeeeccCCCEEEEecCCceEEEEe-
Confidence            34568999999999999999999999999999986632   56677889999999999999999999999999999999 


Q ss_pred             eCCCCCceeeEEEeccCcceEEEEECCCC-CeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEE
Q psy11529         85 NNDDKKWKPTLVLLRINRAATCVKWSPLE-NKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLG  163 (244)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~  163 (244)
                       .++++...  ....|..-++.+.-+.-| .++.+++.|+++++||++....     ......+-.++++.|..++..+.
T Consensus       119 -~~tG~~~r--k~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~-----~~t~~~kyqltAv~f~d~s~qv~  190 (338)
T KOG0265|consen  119 -AETGKRIR--KHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEA-----IKTFENKYQLTAVGFKDTSDQVI  190 (338)
T ss_pred             -cccceeee--hhccccceeeecCccccCCeEEEecCCCceEEEEeecccch-----hhccccceeEEEEEeccccccee
Confidence             78887543  445688888888854444 4567788899999999998764     22233356899999999999999


Q ss_pred             EeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCCCC
Q psy11529        164 CGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQVL  243 (244)
Q Consensus       164 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~  243 (244)
                      +|+-|+.|++||+                  +.....+.+.+|   ..+|+.+..+|+|.++.+-+.|.++++||++.+.
T Consensus       191 sggIdn~ikvWd~------------------r~~d~~~~lsGh---~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~  249 (338)
T KOG0265|consen  191 SGGIDNDIKVWDL------------------RKNDGLYTLSGH---ADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFA  249 (338)
T ss_pred             eccccCceeeecc------------------ccCcceEEeecc---cCceeeEEeccCCCccccccccceEEEEEecccC
Confidence            9999999999999                  567888999999   9999999999999999999999999999999876


Q ss_pred             C
Q psy11529        244 P  244 (244)
Q Consensus       244 p  244 (244)
                      |
T Consensus       250 p  250 (338)
T KOG0265|consen  250 P  250 (338)
T ss_pred             C
Confidence            5

>KOG0285|consensus

Probab=100.00  E-value=1.9e-34  Score=204.36  Aligned_cols=204  Identities=15%  Similarity=0.211  Sum_probs=184.9

Q ss_pred             eEEeCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEe
Q psy11529          4 VYSFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWT   83 (244)
Q Consensus         4 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd   83 (244)
                      +.+.|.+.|.|+++.|-+++|++|+.|++++|||+.+  +  ++..++.+|...|..+++|+-..|+++++.|+.|+.||
T Consensus       146 Vi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlat--g--~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwD  221 (460)
T KOG0285|consen  146 VISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLAT--G--QLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWD  221 (460)
T ss_pred             hhhhccceEEEEeeCCCceeEEecCCCceeEEEEccc--C--eEEEeecchhheeeeeeecccCceEEEecCCCeeEEEe
Confidence            4556789999999999999999999999999999988  6  78889999999999999999999999999999999999


Q ss_pred             eeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEE
Q psy11529         84 QNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLG  163 (244)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~  163 (244)
                        ++..+.+..  ..+|-+.|.|++.+|.-..|++|+.|.++++||+++...    .....+|...|.++.+.|....++
T Consensus       222 --Le~nkvIR~--YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~----V~~l~GH~~~V~~V~~~~~dpqvi  293 (460)
T KOG0285|consen  222 --LEYNKVIRH--YHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRAS----VHVLSGHTNPVASVMCQPTDPQVI  293 (460)
T ss_pred             --chhhhhHHH--hccccceeEEEeccccceeEEecCCcceEEEeeecccce----EEEecCCCCcceeEEeecCCCceE
Confidence              777764433  367889999999999999999999999999999999875    677889999999999999888999


Q ss_pred             EeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCC
Q psy11529        164 CGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQ  241 (244)
Q Consensus       164 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~  241 (244)
                      +|+.|++|++||+                  ..++.+..+..|   ...+.+++.+|....+++++.| .|+-|++..
T Consensus       294 t~S~D~tvrlWDl------------------~agkt~~tlt~h---kksvral~lhP~e~~fASas~d-nik~w~~p~  349 (460)
T KOG0285|consen  294 TGSHDSTVRLWDL------------------RAGKTMITLTHH---KKSVRALCLHPKENLFASASPD-NIKQWKLPE  349 (460)
T ss_pred             EecCCceEEEeee------------------ccCceeEeeecc---cceeeEEecCCchhhhhccCCc-cceeccCCc
Confidence            9999999999999                  678888888888   9999999999999999998877 688888764

>KOG0291|consensus

Probab=100.00  E-value=1.1e-33  Score=217.24  Aligned_cols=204  Identities=19%  Similarity=0.256  Sum_probs=177.0

Q ss_pred             eCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeC
Q psy11529          7 FGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNN   86 (244)
Q Consensus         7 ~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~   86 (244)
                      .|...+++++++|||+++|+|+.||.|+|||...  +  -+..++..|+..|+.+.|+..|+.+++++-||+|+.||  +
T Consensus       348 gH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~S--g--fC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwD--l  421 (893)
T KOG0291|consen  348 GHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQS--G--FCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWD--L  421 (893)
T ss_pred             ccccceeeEEECCCCcEEEeccCCCcEEEEeccC--c--eEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeee--e
Confidence            3578999999999999999999999999999977  5  89999999999999999999999999999999999999  5


Q ss_pred             CCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCC-eEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEe
Q psy11529         87 DDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGAR-LISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCG  165 (244)
Q Consensus        87 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~  165 (244)
                      ...+.-.+++ ...+.+..|++..|.|..+..|+.|. .|.+|++++++.    .....+|+++|.+++|+|++..|+++
T Consensus       422 kRYrNfRTft-~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGql----lDiLsGHEgPVs~l~f~~~~~~LaS~  496 (893)
T KOG0291|consen  422 KRYRNFRTFT-SPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQL----LDILSGHEGPVSGLSFSPDGSLLASG  496 (893)
T ss_pred             cccceeeeec-CCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCee----eehhcCCCCcceeeEEccccCeEEec
Confidence            5555433443 23456678999999999988888876 699999999975    67788999999999999999999999


Q ss_pred             eCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCCC
Q psy11529        166 STDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQV  242 (244)
Q Consensus       166 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~  242 (244)
                      +.|.+|++||+.                 .....+.++..    ...+..++|+|||+-|+++..||.|.+||++..
T Consensus       497 SWDkTVRiW~if-----------------~s~~~vEtl~i----~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~  552 (893)
T KOG0291|consen  497 SWDKTVRIWDIF-----------------SSSGTVETLEI----RSDVLAVSFRPDGKELAVATLDGQITFFDIKEA  552 (893)
T ss_pred             cccceEEEEEee-----------------ccCceeeeEee----ccceeEEEEcCCCCeEEEEEecceEEEEEhhhc
Confidence            999999999994                 22234445544    678999999999999999999999999998753

>KOG0273|consensus

Probab=100.00  E-value=2.3e-33  Score=204.95  Aligned_cols=208  Identities=20%  Similarity=0.313  Sum_probs=180.7

Q ss_pred             eEEeCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCC-------------------------------------Ccce
Q psy11529          4 VYSFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAA-------------------------------------NDWS   46 (244)
Q Consensus         4 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~-------------------------------------~~~~   46 (244)
                      .+..|++||.++.|+.+|.+|++++.|+++.+||.....                                     +.-.
T Consensus       271 tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~  350 (524)
T KOG0273|consen  271 TLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDR  350 (524)
T ss_pred             hhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCC
Confidence            345689999999999999999999999999999973310                                     1113


Q ss_pred             eeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCCCCCceeeEEEeccCcceEEEEECCCC---------CeEE
Q psy11529         47 QLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLE---------NKFA  117 (244)
Q Consensus        47 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---------~~l~  117 (244)
                      +..++.+|.++|.++.|+|.+.+|+++++|++++||.  ......  ...+..|...|..+.|+|+|         ..++
T Consensus       351 P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs--~~~~~~--~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~  426 (524)
T KOG0273|consen  351 PVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWS--MGQSNS--VHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLA  426 (524)
T ss_pred             cceeeecccCceEEEEECCCCceEEEecCCCeeEeee--cCCCcc--hhhhhhhccceeeEeecCCCCccCCCcCCceEE
Confidence            5566788999999999999999999999999999999  444443  33456789999999999974         4699


Q ss_pred             EeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCcccccc
Q psy11529        118 AGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLG  197 (244)
Q Consensus       118 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~  197 (244)
                      +++.|++|++||+..+.+    ...+..|..+|.+++|+|+|+++|+|+.||.|.+|+.                  +++
T Consensus       427 sas~dstV~lwdv~~gv~----i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~------------------~~~  484 (524)
T KOG0273|consen  427 SASFDSTVKLWDVESGVP----IHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWST------------------KTG  484 (524)
T ss_pred             EeecCCeEEEEEccCCce----eEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccc------------------cch
Confidence            999999999999999975    6667789999999999999999999999999999999                  789


Q ss_pred             ceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCC
Q psy11529        198 NCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQ  241 (244)
Q Consensus       198 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~  241 (244)
                      +.++.+.+    .+.|..++|+.+|.+|..+-.|+.+++-|++.
T Consensus       485 ~l~~s~~~----~~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr~  524 (524)
T KOG0273|consen  485 KLVKSYQG----TGGIFELCWNAAGDKLGACASDGSVCVLDLRK  524 (524)
T ss_pred             heeEeecC----CCeEEEEEEcCCCCEEEEEecCCCceEEEecC
Confidence            99999988    77899999999999999999999999999863

>KOG0276|consensus

Probab=100.00  E-value=1e-33  Score=213.57  Aligned_cols=206  Identities=17%  Similarity=0.317  Sum_probs=187.9

Q ss_pred             EEeCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEee
Q psy11529          5 YSFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQ   84 (244)
Q Consensus         5 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~   84 (244)
                      +....-||++..|-+..+.+++|+.|..|+||+..+  .  +.+..+..|...|.+++.+|...+++++++|-.|++|| 
T Consensus        51 feV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt--~--ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~-  125 (794)
T KOG0276|consen   51 FEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNT--G--EKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWD-  125 (794)
T ss_pred             eeecccchhhheeeeccceEEEecCCceEEEEeccc--c--eeeEEeeccccceeeeeecCCCCeEEecCCccEEEEee-
Confidence            344478999999999999999999999999999988  5  88999999999999999999999999999999999999 


Q ss_pred             eCCCCCceeeEEEeccCcceEEEEECCC-CCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCC--CE
Q psy11529         85 NNDDKKWKPTLVLLRINRAATCVKWSPL-ENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNN--HL  161 (244)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~--~~  161 (244)
                       .+ +.+.+...+.+|...|.+++|+|. .+.+|+++-|++|+||.+....+    .....+|...|+++++-+-|  .+
T Consensus       126 -we-~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~----nfTl~gHekGVN~Vdyy~~gdkpy  199 (794)
T KOG0276|consen  126 -WE-NEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHP----NFTLEGHEKGVNCVDYYTGGDKPY  199 (794)
T ss_pred             -cc-CceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCC----ceeeeccccCcceEEeccCCCcce
Confidence             54 456677788999999999999995 67899999999999999998875    66777999999999999855  59


Q ss_pred             EEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCC
Q psy11529        162 LGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQ  241 (244)
Q Consensus       162 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~  241 (244)
                      |++|++|.+|+|||.                  ++..++.++.+|   ...|+.+.|+|.-.++++|++||+++||+-.+
T Consensus       200 lIsgaDD~tiKvWDy------------------Qtk~CV~TLeGH---t~Nvs~v~fhp~lpiiisgsEDGTvriWhs~T  258 (794)
T KOG0276|consen  200 LISGADDLTIKVWDY------------------QTKSCVQTLEGH---TNNVSFVFFHPELPIIISGSEDGTVRIWNSKT  258 (794)
T ss_pred             EEecCCCceEEEeec------------------chHHHHHHhhcc---cccceEEEecCCCcEEEEecCCccEEEecCcc
Confidence            999999999999999                  788999999999   99999999999999999999999999999876


Q ss_pred             C
Q psy11529        242 V  242 (244)
Q Consensus       242 ~  242 (244)
                      .
T Consensus       259 y  259 (794)
T KOG0276|consen  259 Y  259 (794)
T ss_pred             e
Confidence            4

>KOG1523|consensus

Probab=100.00  E-value=5.6e-33  Score=194.11  Aligned_cols=233  Identities=62%  Similarity=1.116  Sum_probs=217.1

Q ss_pred             eeEEeC--CCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCc-ceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccE
Q psy11529          3 EVYSFG--INPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAAND-WSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNA   79 (244)
Q Consensus         3 ~~~~~~--~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i   79 (244)
                      +++.+|  .++|+|.+|++|+..+|++.+...|.||...+  .+ ++..+++..|...|++++|+|..+.|++|+.|..-
T Consensus         2 ~~~~~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~--~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drna   79 (361)
T KOG1523|consen    2 AVVVFHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLG--ADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNA   79 (361)
T ss_pred             ceEEeeeccCceeeeeecCCCceEEeccCCceEEEEEecC--CCCceeceehhhhCcceeEEeecCCCCceeEccCCCCc
Confidence            344554  79999999999999999999999999999977  55 78999999999999999999999999999999999


Q ss_pred             EEEeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCC
Q psy11529         80 YVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNN  159 (244)
Q Consensus        80 ~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~  159 (244)
                      ++|.. ...+++.+.+.+..++..++++.|+|.++.||+|+....|.||-++.++..|..+....++.+.|++++|+|++
T Consensus        80 yVw~~-~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnn  158 (361)
T KOG1523|consen   80 YVWTQ-PSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNN  158 (361)
T ss_pred             ccccc-CCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCc
Confidence            99993 27889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeC
Q psy11529        160 HLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMS  239 (244)
Q Consensus       160 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~  239 (244)
                      -+|++|+.|+..++|.....+++..+.+..|+...+.++++.++...   .+.+..+.|+|+|..|+-.+.|+.+.+=|.
T Consensus       159 VLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~---ggwvh~v~fs~sG~~lawv~Hds~v~~~da  235 (361)
T KOG1523|consen  159 VLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSS---GGWVHGVLFSPSGNRLAWVGHDSTVSFVDA  235 (361)
T ss_pred             ceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccC---CCceeeeEeCCCCCEeeEecCCCceEEeec
Confidence            99999999999999999999999999999999999999999998655   899999999999999999999999998776


Q ss_pred             CC
Q psy11529        240 QQ  241 (244)
Q Consensus       240 ~~  241 (244)
                      ..
T Consensus       236 ~~  237 (361)
T KOG1523|consen  236 AG  237 (361)
T ss_pred             CC
Confidence            43

>KOG0282|consensus

Probab=100.00  E-value=1.7e-34  Score=211.36  Aligned_cols=223  Identities=20%  Similarity=0.277  Sum_probs=178.8

Q ss_pred             EEeCCCceEEEEEcC-CCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEe
Q psy11529          5 YSFGINPVTTHAWNN-TRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWT   83 (244)
Q Consensus         5 ~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd   83 (244)
                      ++-|+..|+++.|.| .+.+|++++.|+.|+||++...+   ++++++.+|..+|..++|+++|..|++++.|+.+++||
T Consensus       210 ~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~---~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwD  286 (503)
T KOG0282|consen  210 LSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDR---RCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWD  286 (503)
T ss_pred             ccCCccccchhhhccceeeEEEecCCCceEEEEEEecCc---ceehhhhcchhhhhhhhccccCCeeeeeecceeeeeec
Confidence            445689999999999 89999999999999999996532   89999999999999999999999999999999999999


Q ss_pred             eeCCCCCceeeEEEeccCcceEEEEECCCC-CeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEE
Q psy11529         84 QNNDDKKWKPTLVLLRINRAATCVKWSPLE-NKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLL  162 (244)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l  162 (244)
                        .++|+....+.   ....+.|+.|+|++ +.+++|+.|+.|+.||+++++.    .+....|-+.|..+.|-++|+.+
T Consensus       287 --tETG~~~~~f~---~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kv----vqeYd~hLg~i~~i~F~~~g~rF  357 (503)
T KOG0282|consen  287 --TETGQVLSRFH---LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKV----VQEYDRHLGAILDITFVDEGRRF  357 (503)
T ss_pred             --cccceEEEEEe---cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHH----HHHHHhhhhheeeeEEccCCceE
Confidence              89998655543   45678999999998 8899999999999999999974    55566778999999999999999


Q ss_pred             EEeeCCCeEEEEEeeeccccc---------------CCCCCCCCccccccce--------------eEEecCCCCCCCCe
Q psy11529        163 GCGSTDFKVRVFSAYIKDIES---------------APQSTNWGSKSTLGNC--------------LVELNNSSSGGGWI  213 (244)
Q Consensus       163 ~~~~~dg~i~i~d~~~~~~~~---------------~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~v  213 (244)
                      ++.++|+.++||+.+..-...               .+.. .+-........              ...+.+|.. .+.-
T Consensus       358 issSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~-~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~v-aGys  435 (503)
T KOG0282|consen  358 ISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNG-KWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSV-AGYS  435 (503)
T ss_pred             eeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCC-CeehhhccCceEEEEecccccccCHhhhhcceec-cCce
Confidence            999999999999986332111               0000 00000011111              122344422 4556


Q ss_pred             EEEEEecCCCEEEEeeCCCcEEEEeCCC
Q psy11529        214 HSVAFSKDGNKLCWTSHDGSINVRMSQQ  241 (244)
Q Consensus       214 ~~~~~s~~~~~l~~~~~dg~i~vwd~~~  241 (244)
                      ..+.|||||++|++|+.||.+.+||.++
T Consensus       436 ~~v~fSpDG~~l~SGdsdG~v~~wdwkt  463 (503)
T KOG0282|consen  436 CQVDFSPDGRTLCSGDSDGKVNFWDWKT  463 (503)
T ss_pred             eeEEEcCCCCeEEeecCCccEEEeechh
Confidence            7899999999999999999999999875

>KOG0291|consensus

Probab=100.00  E-value=1.4e-32  Score=211.28  Aligned_cols=201  Identities=19%  Similarity=0.300  Sum_probs=180.3

Q ss_pred             CCCceEEEEEcCCCCeEEEecC-CCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeC
Q psy11529          8 GINPVTTHAWNNTRQQLAFTPN-NQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNN   86 (244)
Q Consensus         8 ~~~~v~~~~~~~~~~~l~~~~~-d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~   86 (244)
                      .+.+|..++|+..|..||.|+. -|++-||+...  +  .-+...++|-..+++++++|||+++++|+.||+|+|||  .
T Consensus       306 s~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqs--E--sYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn--~  379 (893)
T KOG0291|consen  306 SDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQS--E--SYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWN--T  379 (893)
T ss_pred             ccceeeEEEecccCCEEEEcCCccceEEEEEeec--c--ceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEe--c
Confidence            3689999999999999999875 47999999977  4  55667789999999999999999999999999999999  6


Q ss_pred             CCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEee
Q psy11529         87 DDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGS  166 (244)
Q Consensus        87 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~  166 (244)
                      ..+-+  ..++..|.+.|+.+.|+..++.+++++-||+|+.||+.....   .+....+..-...+++..|.|.++..|+
T Consensus       380 ~SgfC--~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrN---fRTft~P~p~QfscvavD~sGelV~AG~  454 (893)
T KOG0291|consen  380 QSGFC--FVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRN---FRTFTSPEPIQFSCVAVDPSGELVCAGA  454 (893)
T ss_pred             cCceE--EEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccce---eeeecCCCceeeeEEEEcCCCCEEEeec
Confidence            67654  555678999999999999999999999999999999998876   4555566667888999999999998888


Q ss_pred             CCC-eEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCC
Q psy11529        167 TDF-KVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQ  240 (244)
Q Consensus       167 ~dg-~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~  240 (244)
                      .|. .|.+|++                  ++|+.+..+.+|   .++|.+++|+|++..|+++|.|.+|++||+-
T Consensus       455 ~d~F~IfvWS~------------------qTGqllDiLsGH---EgPVs~l~f~~~~~~LaS~SWDkTVRiW~if  508 (893)
T KOG0291|consen  455 QDSFEIFVWSV------------------QTGQLLDILSGH---EGPVSGLSFSPDGSLLASGSWDKTVRIWDIF  508 (893)
T ss_pred             cceEEEEEEEe------------------ecCeeeehhcCC---CCcceeeEEccccCeEEeccccceEEEEEee
Confidence            876 7999999                  889999999999   9999999999999999999999999999974

>KOG0283|consensus

Probab=100.00  E-value=2.1e-33  Score=217.78  Aligned_cols=228  Identities=14%  Similarity=0.213  Sum_probs=171.6

Q ss_pred             eeEEeCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccC----------------------------C------------
Q psy11529          3 EVYSFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKA----------------------------A------------   42 (244)
Q Consensus         3 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~----------------------------~------------   42 (244)
                      ++...|.+.|.++.||+||++||+|+.|+.|+||.+...                            .            
T Consensus       261 e~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~  340 (712)
T KOG0283|consen  261 EISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSR  340 (712)
T ss_pred             ccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccc
Confidence            444578999999999999999999999999999987430                            0            


Q ss_pred             -----C-----------cceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCCCCCceeeEEEeccCcceEE
Q psy11529         43 -----N-----------DWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATC  106 (244)
Q Consensus        43 -----~-----------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~  106 (244)
                           .           .-++++.+.+|.+.|..+.||. .++|++++.|.+|++|+  +...+++..   ..|...|+|
T Consensus       341 ~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSK-n~fLLSSSMDKTVRLWh--~~~~~CL~~---F~HndfVTc  414 (712)
T KOG0283|consen  341 KGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSK-NNFLLSSSMDKTVRLWH--PGRKECLKV---FSHNDFVTC  414 (712)
T ss_pred             cccCCccccCCCccccccccchhhhhccchhheeccccc-CCeeEeccccccEEeec--CCCcceeeE---EecCCeeEE
Confidence                 0           0124455689999999999997 45889999999999999  677665444   459999999


Q ss_pred             EEECC-CCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEeeCCCeEEEEEeeecccccCC
Q psy11529        107 VKWSP-LENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAP  185 (244)
Q Consensus       107 ~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~  185 (244)
                      ++|+| |.+++++|+-|+.++||++...+.     ........-|++++|.|||++.++|+.+|.+++|+....++....
T Consensus       415 VaFnPvDDryFiSGSLD~KvRiWsI~d~~V-----v~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~  489 (712)
T KOG0283|consen  415 VAFNPVDDRYFISGSLDGKVRLWSISDKKV-----VDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDF  489 (712)
T ss_pred             EEecccCCCcEeecccccceEEeecCcCee-----EeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEee
Confidence            99999 689999999999999999988753     333444578999999999999999999999999998643322110


Q ss_pred             C-------------CC---CCCc-----------------cccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCC
Q psy11529        186 Q-------------ST---NWGS-----------------KSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDG  232 (244)
Q Consensus       186 ~-------------~~---~~~~-----------------~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg  232 (244)
                      .             .+   ....                 ......++..+++.+. ...-....|+.||++|+++++|.
T Consensus       490 ~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n-~~SQ~~Asfs~Dgk~IVs~seDs  568 (712)
T KOG0283|consen  490 HIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRN-TSSQISASFSSDGKHIVSASEDS  568 (712)
T ss_pred             eEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhccccc-CCcceeeeEccCCCEEEEeecCc
Confidence            0             00   0000                 1111223333444322 23345678999999999999999


Q ss_pred             cEEEEeCCCC
Q psy11529        233 SINVRMSQQV  242 (244)
Q Consensus       233 ~i~vwd~~~~  242 (244)
                      .|++|+++.+
T Consensus       569 ~VYiW~~~~~  578 (712)
T KOG0283|consen  569 WVYIWKNDSF  578 (712)
T ss_pred             eEEEEeCCCC
Confidence            9999998543

>KOG0318|consensus

Probab=100.00  E-value=3.9e-32  Score=201.10  Aligned_cols=208  Identities=16%  Similarity=0.226  Sum_probs=163.2

Q ss_pred             eCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeec---cCCCceEEEEeCCCCCeEEEEeCCccEEEEe
Q psy11529          7 FGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLD---GHDLKVTGIDWAPNTNRIVTCSADRNAYVWT   83 (244)
Q Consensus         7 ~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd   83 (244)
                      -|..-|.|+.|+|||.++|+++.||++.+||=.+  +  +.+..+.   +|++.|.+++|+||++.+++++.|.+++|||
T Consensus       188 ~HskFV~~VRysPDG~~Fat~gsDgki~iyDGkt--g--e~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWd  263 (603)
T KOG0318|consen  188 EHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKT--G--EKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWD  263 (603)
T ss_pred             ccccceeeEEECCCCCeEEEecCCccEEEEcCCC--c--cEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEE
Confidence            3567899999999999999999999999999766  4  6666776   8999999999999999999999999999999


Q ss_pred             eeCCCCCcee-----------------------------------------eEEEeccCcceEEEEECCCCCeEEEeeCC
Q psy11529         84 QNNDDKKWKP-----------------------------------------TLVLLRINRAATCVKWSPLENKFAAGSGA  122 (244)
Q Consensus        84 ~~~~~~~~~~-----------------------------------------~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  122 (244)
                      +  .+.+...                                         ...+.+|...|+++..+|++++|++|+.|
T Consensus       264 V--s~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyD  341 (603)
T KOG0318|consen  264 V--STNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYD  341 (603)
T ss_pred             e--eccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccC
Confidence            5  3332211                                         12345788899999999999999999999


Q ss_pred             CeEEEEEeecCCC-------------------------------------------------------------------
Q psy11529        123 RLISVCYFESEND-------------------------------------------------------------------  135 (244)
Q Consensus       123 ~~i~i~d~~~~~~-------------------------------------------------------------------  135 (244)
                      |.|.-|+..++..                                                                   
T Consensus       342 G~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~av  421 (603)
T KOG0318|consen  342 GHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAV  421 (603)
T ss_pred             ceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEE
Confidence            9999999754322                                                                   


Q ss_pred             -----------------------------------------------ce-------EEEeeecCCCCceeEEEecCCCCE
Q psy11529        136 -----------------------------------------------WW-------VAKHIKKPIKSTITCLDWHPNNHL  161 (244)
Q Consensus       136 -----------------------------------------------~~-------~~~~~~~~~~~~v~~~~~~p~~~~  161 (244)
                                                                     .+       ........|.+++++++++||+.+
T Consensus       422 v~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~y  501 (603)
T KOG0318|consen  422 VACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAY  501 (603)
T ss_pred             EEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcE
Confidence                                                           00       001112334567777777777777


Q ss_pred             EEEeeCCCeEEEEEeeecccccCCCCCCCCccccccce-eEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCC
Q psy11529        162 LGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNC-LVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQ  240 (244)
Q Consensus       162 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~  240 (244)
                      ||++...+.+.+||+..                  .+. ...+.-|   ...|.+++|+|+.+++|+|+-|..|.||+++
T Consensus       502 la~~Da~rkvv~yd~~s------------------~~~~~~~w~FH---takI~~~aWsP~n~~vATGSlDt~Viiysv~  560 (603)
T KOG0318|consen  502 LAAGDASRKVVLYDVAS------------------REVKTNRWAFH---TAKINCVAWSPNNKLVATGSLDTNVIIYSVK  560 (603)
T ss_pred             EEEeccCCcEEEEEccc------------------Cceecceeeee---eeeEEEEEeCCCceEEEeccccceEEEEEcc
Confidence            77777777777777732                  222 2334446   8899999999999999999999999999987


Q ss_pred             C
Q psy11529        241 Q  241 (244)
Q Consensus       241 ~  241 (244)
                      +
T Consensus       561 k  561 (603)
T KOG0318|consen  561 K  561 (603)
T ss_pred             C
Confidence            5

>KOG0293|consensus

Probab=100.00  E-value=2.9e-33  Score=201.66  Aligned_cols=229  Identities=17%  Similarity=0.230  Sum_probs=170.2

Q ss_pred             EeCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeee
Q psy11529          6 SFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQN   85 (244)
Q Consensus         6 ~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~   85 (244)
                      +-|.+.|.-+.||++|++||+++.|.+..+|.+..+ ..++...++.+|..+|..+.||||.++|++|+.|..+.+||  
T Consensus       221 ~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d-~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwD--  297 (519)
T KOG0293|consen  221 QDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYD-VHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWD--  297 (519)
T ss_pred             hhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecC-cceeeeeeeecccCceEEEEECCCCCeEEecCchHheeecc--
Confidence            446899999999999999999999999999998543 34677889999999999999999999999999999999999  


Q ss_pred             CCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCC--------------------ceEEEee---
Q psy11529         86 NDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESEND--------------------WWVAKHI---  142 (244)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~--------------------~~~~~~~---  142 (244)
                      ..++....... .++...+.+++|.|||..+++|+.|+.+..||++....                    .+.....   
T Consensus       298 v~tgd~~~~y~-~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~  376 (519)
T KOG0293|consen  298 VDTGDLRHLYP-SGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDK  376 (519)
T ss_pred             CCcchhhhhcc-cCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCCCcEEEEEeccc
Confidence            78887554443 23557899999999999999999999999999765422                    0000000   


Q ss_pred             --------------ecCCCCceeEEEecCCCCEEEEeeCCCeEEEEEeeecccccC----CCC---------------CC
Q psy11529        143 --------------KKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESA----PQS---------------TN  189 (244)
Q Consensus       143 --------------~~~~~~~v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~----~~~---------------~~  189 (244)
                                    ......++++++.+.+++++++.-.+..+++||+....+...    ...               ..
T Consensus       377 ~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fia  456 (519)
T KOG0293|consen  377 KIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIA  456 (519)
T ss_pred             ceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEE
Confidence                          001134666777776666666655566666666542111100    000               00


Q ss_pred             CCc--------cccccceeEEecCCCCCCCCeEEEEEec-CCCEEEEeeCCCcEEEEeCCC
Q psy11529        190 WGS--------KSTLGNCLVELNNSSSGGGWIHSVAFSK-DGNKLCWTSHDGSINVRMSQQ  241 (244)
Q Consensus       190 ~~~--------~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vwd~~~  241 (244)
                      .++        ...+++++..+.+|   ...|++++|+| +-..+|++|+||+|+||....
T Consensus       457 SGSED~kvyIWhr~sgkll~~LsGH---s~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~  514 (519)
T KOG0293|consen  457 SGSEDSKVYIWHRISGKLLAVLSGH---SKTVNCVSWNPADPEMFASASDDGTIRIWGPSD  514 (519)
T ss_pred             ecCCCceEEEEEccCCceeEeecCC---cceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence            000        23678899999999   99999999999 555899999999999998764

>KOG0292|consensus

Probab=100.00  E-value=7.1e-33  Score=216.42  Aligned_cols=211  Identities=19%  Similarity=0.220  Sum_probs=184.9

Q ss_pred             EEeCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEee
Q psy11529          5 YSFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQ   84 (244)
Q Consensus         5 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~   84 (244)
                      |.-|.++|..++|+|.+.++++|+.|-.|+||+...  .  +++.++.+|-..|..+.|++.-.+++++|+|.+|+||+ 
T Consensus        47 FdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~--r--rclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWN-  121 (1202)
T KOG0292|consen   47 FDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKT--R--RCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWN-  121 (1202)
T ss_pred             hhccCCccceeeecCCCCeEEecCCccEEEEEeccc--c--eehhhhccccceeEEeeccCCCceEEEccCCCeEEEEe-
Confidence            445799999999999999999999999999999987  5  89999999999999999999999999999999999999 


Q ss_pred             eCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCC-------------------------ceEE
Q psy11529         85 NNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESEND-------------------------WWVA  139 (244)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~-------------------------~~~~  139 (244)
                       ..+++++.  .+.+|...|.|.+|+|....+++++-|.+|+|||+..-+.                         --..
T Consensus       122 -wqsr~~ia--vltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVV  198 (1202)
T KOG0292|consen  122 -WQSRKCIA--VLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVV  198 (1202)
T ss_pred             -ccCCceEE--EEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeee
Confidence             78887654  4568999999999999999999999999999999853211                         1134


Q ss_pred             EeeecCCCCceeEEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEe
Q psy11529        140 KHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFS  219 (244)
Q Consensus       140 ~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  219 (244)
                      +....+|...|+-++|+|.-.+|++|++|..|++|.+.-                ...-.+.+..+|   .+.|+++-|+
T Consensus       199 K~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmne----------------tKaWEvDtcrgH---~nnVssvlfh  259 (1202)
T KOG0292|consen  199 KHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNE----------------TKAWEVDTCRGH---YNNVSSVLFH  259 (1202)
T ss_pred             eeeecccccccceEEecCCcceEEecCCcceeeEEEecc----------------ccceeehhhhcc---cCCcceEEec
Confidence            566788999999999999999999999999999999831                122345667888   9999999999


Q ss_pred             cCCCEEEEeeCCCcEEEEeCCCC
Q psy11529        220 KDGNKLCWTSHDGSINVRMSQQV  242 (244)
Q Consensus       220 ~~~~~l~~~~~dg~i~vwd~~~~  242 (244)
                      |...++++.|+|++|+|||+++-
T Consensus       260 p~q~lIlSnsEDksirVwDm~kR  282 (1202)
T KOG0292|consen  260 PHQDLILSNSEDKSIRVWDMTKR  282 (1202)
T ss_pred             CccceeEecCCCccEEEEecccc
Confidence            99999999999999999999764

>KOG0319|consensus

Probab=100.00  E-value=5.1e-33  Score=212.93  Aligned_cols=212  Identities=17%  Similarity=0.238  Sum_probs=183.2

Q ss_pred             eEEeCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCC-CCeEEEEeCCccEEEE
Q psy11529          4 VYSFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPN-TNRIVTCSADRNAYVW   82 (244)
Q Consensus         4 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~iw   82 (244)
                      +...|++.|.+++...+|-+|++|+.|.++++|.+++......++....+|...|.+++++.. ..+|++++.|+++++|
T Consensus       360 ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W  439 (775)
T KOG0319|consen  360 IIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLW  439 (775)
T ss_pred             EEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEe
Confidence            556788999999966778899999999999999996533444567778899999999999874 4588999999999999


Q ss_pred             eeeCCCC-C--ceeeE----EEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEe
Q psy11529         83 TQNNDDK-K--WKPTL----VLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDW  155 (244)
Q Consensus        83 d~~~~~~-~--~~~~~----~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~  155 (244)
                      ++  ... .  ....+    ....|...|++++++|+.+++|+|+.|++.+||+++...    ......+|...+.++.|
T Consensus       440 ~l--~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~----l~~vLsGH~RGvw~V~F  513 (775)
T KOG0319|consen  440 DL--PKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLR----LLGVLSGHTRGVWCVSF  513 (775)
T ss_pred             cC--CCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCce----EEEEeeCCccceEEEEe
Confidence            95  331 1  11111    224588999999999999999999999999999999543    57788999999999999


Q ss_pred             cCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEE
Q psy11529        156 HPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSIN  235 (244)
Q Consensus       156 ~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~  235 (244)
                      +|..+.++|++.|++|+||.+                  .+..++.++.+|   ...|..+.|-.+|+.|++++.||.|+
T Consensus       514 s~~dq~laT~SgD~TvKIW~i------------------s~fSClkT~eGH---~~aVlra~F~~~~~qliS~~adGliK  572 (775)
T KOG0319|consen  514 SKNDQLLATCSGDKTVKIWSI------------------STFSCLKTFEGH---TSAVLRASFIRNGKQLISAGADGLIK  572 (775)
T ss_pred             ccccceeEeccCCceEEEEEe------------------ccceeeeeecCc---cceeEeeeeeeCCcEEEeccCCCcEE
Confidence            999999999999999999999                  789999999999   99999999999999999999999999


Q ss_pred             EEeCCCC
Q psy11529        236 VRMSQQV  242 (244)
Q Consensus       236 vwd~~~~  242 (244)
                      +|++++.
T Consensus       573 lWnikt~  579 (775)
T KOG0319|consen  573 LWNIKTN  579 (775)
T ss_pred             EEeccch
Confidence            9999863

>KOG0295|consensus

Probab=100.00  E-value=6.1e-32  Score=191.73  Aligned_cols=201  Identities=15%  Similarity=0.247  Sum_probs=182.8

Q ss_pred             eCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeC
Q psy11529          7 FGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNN   86 (244)
Q Consensus         7 ~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~   86 (244)
                      -|+..|.++.|-|.|.++++++.|.+|+.|++.+  +  .++.++.+|..-|..++.+.||..+++++.|.++++|-  .
T Consensus       191 gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~t--g--~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~--~  264 (406)
T KOG0295|consen  191 GHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDT--G--YCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWV--V  264 (406)
T ss_pred             CcccceeeEEEEecCCeeeecccccceeEEeccc--c--eeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEE--e
Confidence            3578899999999999999999999999999988  6  89999999999999999999999999999999999999  7


Q ss_pred             CCCCceeeEEEeccCcceEEEEECCC----------C-----CeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCcee
Q psy11529         87 DDKKWKPTLVLLRINRAATCVKWSPL----------E-----NKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTIT  151 (244)
Q Consensus        87 ~~~~~~~~~~~~~~~~~v~~~~~~~~----------~-----~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~  151 (244)
                      .+++++..+  ..|...+.+++|.|.          +     .++.+++.|++|++||+.++..    .....+|..+|.
T Consensus       265 ~t~~~k~~l--R~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~c----L~tL~ghdnwVr  338 (406)
T KOG0295|consen  265 ATKQCKAEL--REHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMC----LFTLVGHDNWVR  338 (406)
T ss_pred             ccchhhhhh--hccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeE----EEEEecccceee
Confidence            777654444  568888999999874          2     4899999999999999999964    677789999999


Q ss_pred             EEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCC
Q psy11529        152 CLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHD  231 (244)
Q Consensus       152 ~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d  231 (244)
                      .++|+|.|+||+++.+|+++++||+                  ...+++..+..|   ..-++++.|+.+-.++++|+-|
T Consensus       339 ~~af~p~Gkyi~ScaDDktlrvwdl------------------~~~~cmk~~~ah---~hfvt~lDfh~~~p~VvTGsVd  397 (406)
T KOG0295|consen  339 GVAFSPGGKYILSCADDKTLRVWDL------------------KNLQCMKTLEAH---EHFVTSLDFHKTAPYVVTGSVD  397 (406)
T ss_pred             eeEEcCCCeEEEEEecCCcEEEEEe------------------ccceeeeccCCC---cceeEEEecCCCCceEEecccc
Confidence            9999999999999999999999999                  788999999998   9999999999999999999999


Q ss_pred             CcEEEEeCC
Q psy11529        232 GSINVRMSQ  240 (244)
Q Consensus       232 g~i~vwd~~  240 (244)
                      .++++|..+
T Consensus       398 qt~KvwEcr  406 (406)
T KOG0295|consen  398 QTVKVWECR  406 (406)
T ss_pred             ceeeeeecC
Confidence            999999753

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=5.2e-31  Score=194.75  Aligned_cols=206  Identities=20%  Similarity=0.298  Sum_probs=176.0

Q ss_pred             eEEeCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEe
Q psy11529          4 VYSFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWT   83 (244)
Q Consensus         4 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd   83 (244)
                      .+..|.++|++++|+|++++|++++.+|.+++|++.+  +  .....+..|...+..+.|+|+++++++++.++.+++||
T Consensus         4 ~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~--~--~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~   79 (289)
T cd00200           4 TLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLET--G--ELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWD   79 (289)
T ss_pred             HhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeC--C--CcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEE
Confidence            3446789999999999999999999999999999987  4  46667788999999999999999999999999999999


Q ss_pred             eeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEE
Q psy11529         84 QNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLG  163 (244)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~  163 (244)
                        ..+++.  ...+..+...+.++.|+|+++++++++.++.+.+||+++.+.    ......|...+.+++|+|++.+++
T Consensus        80 --~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~l~  151 (289)
T cd00200          80 --LETGEC--VRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKC----LTTLRGHTDWVNSVAFSPDGTFVA  151 (289)
T ss_pred             --cCcccc--eEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEE----EEEeccCCCcEEEEEEcCcCCEEE
Confidence              666543  333456777899999999988888888899999999986653    334446778899999999999999


Q ss_pred             EeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCCC
Q psy11529        164 CGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQV  242 (244)
Q Consensus       164 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~  242 (244)
                      +++.++.|++||+                  ..++.+..+..|   ...+.++.|+|+++.+++++.|+.|++||+++.
T Consensus       152 ~~~~~~~i~i~d~------------------~~~~~~~~~~~~---~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~  209 (289)
T cd00200         152 SSSQDGTIKLWDL------------------RTGKCVATLTGH---TGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTG  209 (289)
T ss_pred             EEcCCCcEEEEEc------------------cccccceeEecC---ccccceEEECCCcCEEEEecCCCcEEEEECCCC
Confidence            9888999999998                  456667777777   789999999999999999999999999999753

>KOG0278|consensus

Probab=100.00  E-value=1.4e-32  Score=186.33  Aligned_cols=204  Identities=19%  Similarity=0.277  Sum_probs=175.5

Q ss_pred             eeEEe-CCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEE
Q psy11529          3 EVYSF-GINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYV   81 (244)
Q Consensus         3 ~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i   81 (244)
                      |+|++ |+.-|.+++|+.|.++|++|+.++.++|||++.+.   .+...+.+|.+.|..+.|....+.|++++.|++|++
T Consensus        93 elhsf~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~---App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRL  169 (334)
T KOG0278|consen   93 ELHSFEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPK---APPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRL  169 (334)
T ss_pred             hhhhhhhhheeeeEEecccchhhhccchHHHhhhhhccCCC---CCchhhcCCCCcceeEEEeccCceEEeeccCCceEE
Confidence            55665 47889999999999999999999999999998743   577789999999999999998899999999999999


Q ss_pred             EeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCE
Q psy11529         82 WTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHL  161 (244)
Q Consensus        82 wd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~  161 (244)
                      ||  .+++.....+.   .+..|.++.++++|++|.++. .+.|.+||..+-..   ++..  .....|.+.+++|+...
T Consensus       170 WD--~rTgt~v~sL~---~~s~VtSlEvs~dG~ilTia~-gssV~Fwdaksf~~---lKs~--k~P~nV~SASL~P~k~~  238 (334)
T KOG0278|consen  170 WD--HRTGTEVQSLE---FNSPVTSLEVSQDGRILTIAY-GSSVKFWDAKSFGL---LKSY--KMPCNVESASLHPKKEF  238 (334)
T ss_pred             EE--eccCcEEEEEe---cCCCCcceeeccCCCEEEEec-CceeEEeccccccc---eeec--cCccccccccccCCCce
Confidence            99  78888555554   578899999999998877654 46699999988765   2222  23468999999999999


Q ss_pred             EEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEe-cCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCC
Q psy11529        162 LGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVEL-NNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQ  240 (244)
Q Consensus       162 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~  240 (244)
                      +++|++|+.++.||.                  .+++.+..+ ++|   .++|.++.|+|||...++||.||+|++|.+.
T Consensus       239 fVaGged~~~~kfDy------------------~TgeEi~~~nkgh---~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~  297 (334)
T KOG0278|consen  239 FVAGGEDFKVYKFDY------------------NTGEEIGSYNKGH---FGPVHCVRFSPDGELYASGSEDGTIRLWQTT  297 (334)
T ss_pred             EEecCcceEEEEEec------------------cCCceeeecccCC---CCceEEEEECCCCceeeccCCCceEEEEEec
Confidence            999999999999999                  677777776 777   8999999999999999999999999999876


Q ss_pred             C
Q psy11529        241 Q  241 (244)
Q Consensus       241 ~  241 (244)
                      .
T Consensus       298 ~  298 (334)
T KOG0278|consen  298 P  298 (334)
T ss_pred             C
Confidence            4

>PTZ00420 coronin; Provisional

Probab=100.00  E-value=2.2e-30  Score=202.73  Aligned_cols=209  Identities=11%  Similarity=0.129  Sum_probs=156.4

Q ss_pred             EeCCCceEEEEEcCC-CCeEEEecCCCeEEEeeeccCCCc----ceeeeeeccCCCceEEEEeCCCCCe-EEEEeCCccE
Q psy11529          6 SFGINPVTTHAWNNT-RQQLAFTPNNQEVHLYQYEKAAND----WSQLDVLDGHDLKVTGIDWAPNTNR-IVTCSADRNA   79 (244)
Q Consensus         6 ~~~~~~v~~~~~~~~-~~~l~~~~~d~~v~v~~~~~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i   79 (244)
                      ..|.++|.+++|+|+ +.+|++|+.|+.|+||++......    ..+...+.+|...|.+++|+|++.. |++++.|++|
T Consensus        71 ~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtI  150 (568)
T PTZ00420         71 KGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFV  150 (568)
T ss_pred             cCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeE
Confidence            346899999999996 789999999999999999652110    0234567889999999999998875 5688999999


Q ss_pred             EEEeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeE-----EE
Q psy11529         80 YVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITC-----LD  154 (244)
Q Consensus        80 ~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~-----~~  154 (244)
                      ++||  +.+++....+   .+...+.+++|+|+|.+|++++.|+.|+|||++++..    ......|.+.+..     ..
T Consensus       151 rIWD--l~tg~~~~~i---~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~----i~tl~gH~g~~~s~~v~~~~  221 (568)
T PTZ00420        151 NIWD--IENEKRAFQI---NMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEI----ASSFHIHDGGKNTKNIWIDG  221 (568)
T ss_pred             EEEE--CCCCcEEEEE---ecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcE----EEEEecccCCceeEEEEeee
Confidence            9999  6776633222   3567899999999999999999999999999998764    3345566554332     34


Q ss_pred             ecCCCCEEEEeeCCC----eEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeC
Q psy11529        155 WHPNNHLLGCGSTDF----KVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSH  230 (244)
Q Consensus       155 ~~p~~~~l~~~~~dg----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~  230 (244)
                      |++++.+|++++.++    +|+|||++.                 ..+++..+..+. ..+.+......++|.++++|+.
T Consensus       222 fs~d~~~IlTtG~d~~~~R~VkLWDlr~-----------------~~~pl~~~~ld~-~~~~L~p~~D~~tg~l~lsGkG  283 (568)
T PTZ00420        222 LGGDDNYILSTGFSKNNMREMKLWDLKN-----------------TTSALVTMSIDN-ASAPLIPHYDESTGLIYLIGKG  283 (568)
T ss_pred             EcCCCCEEEEEEcCCCCccEEEEEECCC-----------------CCCceEEEEecC-CccceEEeeeCCCCCEEEEEEC
Confidence            568888988877664    799999952                 244454443220 0333334444556889999999


Q ss_pred             CCcEEEEeCCC
Q psy11529        231 DGSINVRMSQQ  241 (244)
Q Consensus       231 dg~i~vwd~~~  241 (244)
                      |+.|++|++..
T Consensus       284 D~tIr~~e~~~  294 (568)
T PTZ00420        284 DGNCRYYQHSL  294 (568)
T ss_pred             CCeEEEEEccC
Confidence            99999999864

>KOG0316|consensus

Probab=100.00  E-value=2.5e-31  Score=178.80  Aligned_cols=200  Identities=20%  Similarity=0.244  Sum_probs=176.3

Q ss_pred             eCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeC
Q psy11529          7 FGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNN   86 (244)
Q Consensus         7 ~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~   86 (244)
                      -++++|.++.|+-||++.++++.|.+|++|+...  +  .+++++.+|...|..++.+.|...|++|+.|..+.+||  +
T Consensus        15 ~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~r--g--~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwD--V   88 (307)
T KOG0316|consen   15 CAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLR--G--ALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWD--V   88 (307)
T ss_pred             ccccceEEEEEccCCCEEEEcCCCceEEeecccc--c--ceeeeecCCCceeeeccccccccccccCCCCceEEEEE--c
Confidence            4589999999999999999999999999999866  4  89999999999999999999999999999999999999  8


Q ss_pred             CCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEee
Q psy11529         87 DDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGS  166 (244)
Q Consensus        87 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~  166 (244)
                      ++++..  ..+.+|..+|+.++|+.+...+++|+-|..+++||-++...  .+.+........|.++..+  +..|++|+
T Consensus        89 ~TGkv~--Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~--ePiQildea~D~V~Si~v~--~heIvaGS  162 (307)
T KOG0316|consen   89 NTGKVD--RRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSF--EPIQILDEAKDGVSSIDVA--EHEIVAGS  162 (307)
T ss_pred             ccCeee--eecccccceeeEEEecCcceEEEeccccceeEEEEcccCCC--CccchhhhhcCceeEEEec--ccEEEeec
Confidence            898854  34568999999999999999999999999999999998865  4555666667889999886  55899999


Q ss_pred             CCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCC
Q psy11529        167 TDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQ  241 (244)
Q Consensus       167 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~  241 (244)
                      .||+++.||+                  +.++....+-     ..+|+++.|++|++..+.++.|+++++.|-++
T Consensus       163 ~DGtvRtydi------------------R~G~l~sDy~-----g~pit~vs~s~d~nc~La~~l~stlrLlDk~t  214 (307)
T KOG0316|consen  163 VDGTVRTYDI------------------RKGTLSSDYF-----GHPITSVSFSKDGNCSLASSLDSTLRLLDKET  214 (307)
T ss_pred             cCCcEEEEEe------------------ecceeehhhc-----CCcceeEEecCCCCEEEEeeccceeeecccch
Confidence            9999999999                  4566555554     55899999999999999999999999988654

>KOG1332|consensus

Probab=100.00  E-value=1.1e-32  Score=186.05  Aligned_cols=217  Identities=18%  Similarity=0.333  Sum_probs=185.1

Q ss_pred             CceeEEeCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCC--CCCeEEEEeCCcc
Q psy11529          1 MAEVYSFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAP--NTNRIVTCSADRN   78 (244)
Q Consensus         1 m~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~   78 (244)
                      |..+-+.|++-|.++...--|++||+++.|++|+|+..++. +...++.++.+|.++|..++|..  -|.+||+++.||.
T Consensus         3 ~q~idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n-~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgk   81 (299)
T KOG1332|consen    3 MQTIDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNN-GQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGK   81 (299)
T ss_pred             ceehhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCC-CCceeeeEecCCCCCeeEEeecccccCcEeeEeecCce
Confidence            34566778899999998889999999999999999999763 22378899999999999999965  7999999999999


Q ss_pred             EEEEeeeCCCCCceeeEEEeccCcceEEEEECCC--CCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEec
Q psy11529         79 AYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPL--ENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWH  156 (244)
Q Consensus        79 i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~  156 (244)
                      |.||.  .+++++........|...|++++|.|.  |-.|++++.||.|.|.+++... .+........|.-.|++++|.
T Consensus        82 VIiWk--e~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g-~w~t~ki~~aH~~GvnsVswa  158 (299)
T KOG1332|consen   82 VIIWK--EENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSG-GWTTSKIVFAHEIGVNSVSWA  158 (299)
T ss_pred             EEEEe--cCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCC-Cccchhhhhccccccceeeec
Confidence            99999  888887777777789999999999997  6779999999999999998873 355667778899999999999


Q ss_pred             CC---C-----------CEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCC
Q psy11529        157 PN---N-----------HLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDG  222 (244)
Q Consensus       157 p~---~-----------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~  222 (244)
                      |.   |           +.|++|+.|..|+||+....                ....-..+.+|   ...|+.++|.|.-
T Consensus       159 pa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~----------------~w~~e~~l~~H---~dwVRDVAwaP~~  219 (299)
T KOG1332|consen  159 PASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSD----------------SWKLERTLEGH---KDWVRDVAWAPSV  219 (299)
T ss_pred             CcCCCccccccCcccccceeeccCCccceeeeecCCc----------------chhhhhhhhhc---chhhhhhhhcccc
Confidence            95   4           56999999999999998321                13444558888   9999999999954


Q ss_pred             ----CEEEEeeCCCcEEEEeCC
Q psy11529        223 ----NKLCWTSHDGSINVRMSQ  240 (244)
Q Consensus       223 ----~~l~~~~~dg~i~vwd~~  240 (244)
                          .+|++++.||++.||-.+
T Consensus       220 gl~~s~iAS~SqDg~viIwt~~  241 (299)
T KOG1332|consen  220 GLPKSTIASCSQDGTVIIWTKD  241 (299)
T ss_pred             CCCceeeEEecCCCcEEEEEec
Confidence                389999999999999765

>KOG0296|consensus

Probab=100.00  E-value=2.1e-30  Score=184.03  Aligned_cols=221  Identities=15%  Similarity=0.111  Sum_probs=187.2

Q ss_pred             EEeCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEee
Q psy11529          5 YSFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQ   84 (244)
Q Consensus         5 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~   84 (244)
                      |..|.++|.+++.+|+.+++++|+.|..-.+|++.+  +  .....+.+|+..|+++.|+.+|.+||+|..+|.|+||+ 
T Consensus        60 F~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~--g--e~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~-  134 (399)
T KOG0296|consen   60 FDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDIST--G--EFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFK-  134 (399)
T ss_pred             hhhcCCceEEEEeCCCCceEEecCCCceEEEEEccC--C--cceeEecCCCCceEEEEEccCceEEEecCCCccEEEEE-
Confidence            344799999999999999999999999999999988  6  57788999999999999999999999999999999999 


Q ss_pred             eCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEE
Q psy11529         85 NNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGC  164 (244)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~  164 (244)
                       ..++.....+  ...-..+.-+.|+|.+..|+.|+.||.+-+|.+.++..    .+.+.+|..++++=.|.|+|+.+++
T Consensus       135 -~stg~~~~~~--~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~----~kv~~Gh~~~ct~G~f~pdGKr~~t  207 (399)
T KOG0296|consen  135 -VSTGGEQWKL--DQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQAL----CKVMSGHNSPCTCGEFIPDGKRILT  207 (399)
T ss_pred             -cccCceEEEe--ecccCceEEEEecccccEEEeecCCCcEEEEECCCcce----eeEecCCCCCcccccccCCCceEEE
Confidence             6777644333  33456788899999999999999999999999998643    5677889999999999999999999


Q ss_pred             eeCCCeEEEEEeeecccccCCC-----C------------------------------------C---------------
Q psy11529        165 GSTDFKVRVFSAYIKDIESAPQ-----S------------------------------------T---------------  188 (244)
Q Consensus       165 ~~~dg~i~i~d~~~~~~~~~~~-----~------------------------------------~---------------  188 (244)
                      +..||+|++|++.+........     +                                    .               
T Consensus       208 gy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~e  287 (399)
T KOG0296|consen  208 GYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDE  287 (399)
T ss_pred             EecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhh
Confidence            9999999999985332111000     0                                    0               


Q ss_pred             -----CCCc---------------------------------------------------------cccccceeEEecCC
Q psy11529        189 -----NWGS---------------------------------------------------------KSTLGNCLVELNNS  206 (244)
Q Consensus       189 -----~~~~---------------------------------------------------------~~~~~~~~~~~~~~  206 (244)
                           .+..                                                         ..++++++.++.+|
T Consensus       288 sve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH  367 (399)
T KOG0296|consen  288 SVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLNTDYLLTACANGKVRQWDARTGQLKFTYTGH  367 (399)
T ss_pred             hhhhcccccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcCcchheeeccCceEEeeeccccceEEEEecC
Confidence                 0000                                                         56788999999999


Q ss_pred             CCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCC
Q psy11529        207 SSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQ  240 (244)
Q Consensus       207 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~  240 (244)
                         ...|.+++++|+.++++|+|.|++.+||++.
T Consensus       368 ---~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~  398 (399)
T KOG0296|consen  368 ---QMGILDFALSPQKRLVVTVSDDNTALVFEVP  398 (399)
T ss_pred             ---chheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence               9999999999999999999999999999875

>KOG0318|consensus

Probab=100.00  E-value=9.3e-31  Score=193.86  Aligned_cols=234  Identities=17%  Similarity=0.266  Sum_probs=172.9

Q ss_pred             eeEEeCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCC----cc
Q psy11529          3 EVYSFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSAD----RN   78 (244)
Q Consensus         3 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----~~   78 (244)
                      .+|+-|..+++-..|+|.|.++|+|...|+|+||+...  .+..+..+++-..++|..++|++++++|++.++.    |.
T Consensus        53 ~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~--~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~  130 (603)
T KOG0318|consen   53 DIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQ--KEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGH  130 (603)
T ss_pred             eeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccC--cceeeeeeeeecccccccceeCCCCcEEEEEecCccceeE
Confidence            46777889999999999999999999999999999876  2223334455556667777777766666655432    34


Q ss_pred             EEEEeeeCC-------------------------------------CCCceeeEEEeccCcceEEEEECCCCCeEEEeeC
Q psy11529         79 AYVWTQNND-------------------------------------DKKWKPTLVLLRINRAATCVKWSPLENKFAAGSG  121 (244)
Q Consensus        79 i~iwd~~~~-------------------------------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  121 (244)
                      +.+||-...                                     ..-++.......|..-|+|+.|+|||+.+++++.
T Consensus       131 ~F~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gs  210 (603)
T KOG0318|consen  131 VFLWDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGS  210 (603)
T ss_pred             EEEecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecC
Confidence            555552100                                     1111122233457788999999999999999999


Q ss_pred             CCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEeeCCCeEEEEEeeecccccCCC--C--------CCCC
Q psy11529        122 ARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQ--S--------TNWG  191 (244)
Q Consensus       122 d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~--------~~~~  191 (244)
                      ||++.+||=.+++....... ..+|++.|.+++|+||++.+++++.|.+++|||+....+...-.  .        ..|.
T Consensus       211 Dgki~iyDGktge~vg~l~~-~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq  289 (603)
T KOG0318|consen  211 DGKIYIYDGKTGEKVGELED-SDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ  289 (603)
T ss_pred             CccEEEEcCCCccEEEEecC-CCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe
Confidence            99999999988876332222 45899999999999999999999999999999997665433110  0        0111


Q ss_pred             c---------------cccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCCC
Q psy11529        192 S---------------KSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQV  242 (244)
Q Consensus       192 ~---------------~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~  242 (244)
                      .               .......+..+.+|   ...|+++..+||+++|++|+.||.|.-|+..+.
T Consensus       290 kd~lItVSl~G~in~ln~~d~~~~~~i~GH---nK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g  352 (603)
T KOG0318|consen  290 KDHLITVSLSGTINYLNPSDPSVLKVISGH---NKSITALTVSPDGKTIYSGSYDGHINSWDSGSG  352 (603)
T ss_pred             CCeEEEEEcCcEEEEecccCCChhheeccc---ccceeEEEEcCCCCEEEeeccCceEEEEecCCc
Confidence            1               22334466778888   999999999999999999999999999998754

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=2.6e-30  Score=214.78  Aligned_cols=205  Identities=14%  Similarity=0.177  Sum_probs=170.3

Q ss_pred             CCceEEEEEcC-CCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCC-CCCeEEEEeCCccEEEEeeeC
Q psy11529          9 INPVTTHAWNN-TRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAP-NTNRIVTCSADRNAYVWTQNN   86 (244)
Q Consensus         9 ~~~v~~~~~~~-~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~   86 (244)
                      ...|.+++|+| ++.+|++++.||.|++||+.+  +  +.+..+.+|...|++++|+| ++.+|++|+.|+.|++||  +
T Consensus       532 ~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~--~--~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd--~  605 (793)
T PLN00181        532 RSKLSGICWNSYIKSQVASSNFEGVVQVWDVAR--S--QLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWS--I  605 (793)
T ss_pred             cCceeeEEeccCCCCEEEEEeCCCeEEEEECCC--C--eEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEE--C
Confidence            46788999987 478999999999999999976  4  67788899999999999997 789999999999999999  6


Q ss_pred             CCCCceeeEEEeccCcceEEEEEC-CCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEe
Q psy11529         87 DDKKWKPTLVLLRINRAATCVKWS-PLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCG  165 (244)
Q Consensus        87 ~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~  165 (244)
                      .++.....+   .+...+.++.|+ +++.+|++|+.|+.|++||++....   .......|...|.++.|. ++.+|+++
T Consensus       606 ~~~~~~~~~---~~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~---~~~~~~~h~~~V~~v~f~-~~~~lvs~  678 (793)
T PLN00181        606 NQGVSIGTI---KTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKL---PLCTMIGHSKTVSYVRFV-DSSTLVSS  678 (793)
T ss_pred             CCCcEEEEE---ecCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCc---cceEecCCCCCEEEEEEe-CCCEEEEE
Confidence            666543333   234678999995 5699999999999999999987653   234456788899999997 67899999


Q ss_pred             eCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCC
Q psy11529        166 STDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQ  241 (244)
Q Consensus       166 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~  241 (244)
                      +.|++|++||++.....            ....++..+.+|   ...+..++|+|++.+|++|+.|+.|++|+...
T Consensus       679 s~D~~ikiWd~~~~~~~------------~~~~~l~~~~gh---~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~  739 (793)
T PLN00181        679 STDNTLKLWDLSMSISG------------INETPLHSFMGH---TNVKNFVGLSVSDGYIATGSETNEVFVYHKAF  739 (793)
T ss_pred             ECCCEEEEEeCCCCccc------------cCCcceEEEcCC---CCCeeEEEEcCCCCEEEEEeCCCEEEEEECCC
Confidence            99999999998532100            124567788888   88999999999999999999999999999753

>KOG1407|consensus

Probab=100.00  E-value=2.1e-31  Score=181.51  Aligned_cols=206  Identities=20%  Similarity=0.323  Sum_probs=170.0

Q ss_pred             CCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCC-CCCeEEEEeCCccEEEEeeeC
Q psy11529          8 GINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAP-NTNRIVTCSADRNAYVWTQNN   86 (244)
Q Consensus         8 ~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~   86 (244)
                      |..+|.+++|+.+|..|++|+.|+++.+|+++.  ..........+|.+.|-.++|+| ....|++++.|.+|++||  .
T Consensus        19 ~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~--~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd--~   94 (313)
T KOG1407|consen   19 HVQKVHSVAWNCDGTKLASGSFDKTVSVWNLER--DRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD--I   94 (313)
T ss_pred             hhhcceEEEEcccCceeeecccCCceEEEEecc--hhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE--e
Confidence            578899999999999999999999999999987  44455567788999999999998 667899999999999999  6


Q ss_pred             CCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCce-----------------------------
Q psy11529         87 DDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWW-----------------------------  137 (244)
Q Consensus        87 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~-----------------------------  137 (244)
                      +.+++.....   ....-.-+.|+|+|.++++++.|..|.+.|.++.+...                             
T Consensus        95 r~~k~~~~i~---~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v  171 (313)
T KOG1407|consen   95 RSGKCTARIE---TKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCV  171 (313)
T ss_pred             ccCcEEEEee---ccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceE
Confidence            7777544443   33444568999999999999999999998876644300                             


Q ss_pred             --------EEEeeecCCCCceeEEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCC
Q psy11529        138 --------VAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSG  209 (244)
Q Consensus       138 --------~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (244)
                              ........|...+.|+.|+|+|+++|+|+.|..+.+||+                  ...-++..+..+   
T Consensus       172 ~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~------------------~ELiC~R~isRl---  230 (313)
T KOG1407|consen  172 EILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDV------------------DELICERCISRL---  230 (313)
T ss_pred             EEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccCh------------------hHhhhheeeccc---
Confidence                    112233557788999999999999999999999999999                  556677778777   


Q ss_pred             CCCeEEEEEecCCCEEEEeeCCCcEEEEeCCC
Q psy11529        210 GGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQ  241 (244)
Q Consensus       210 ~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~  241 (244)
                      .-+|+.+.||.||++||++|+|..|-|=++++
T Consensus       231 dwpVRTlSFS~dg~~lASaSEDh~IDIA~vet  262 (313)
T KOG1407|consen  231 DWPVRTLSFSHDGRMLASASEDHFIDIAEVET  262 (313)
T ss_pred             cCceEEEEeccCcceeeccCccceEEeEeccc
Confidence            89999999999999999999999887655543

>KOG0281|consensus

Probab=100.00  E-value=5.4e-33  Score=196.68  Aligned_cols=197  Identities=22%  Similarity=0.341  Sum_probs=171.0

Q ss_pred             EeCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeee
Q psy11529          6 SFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQN   85 (244)
Q Consensus         6 ~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~   85 (244)
                      ..|.+.|.|+.|.  .+.|++|+.|.+|+|||.++  +  +++.++.+|...|..+.|+  ..++++++.|.++.+||+.
T Consensus       234 ~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~t--g--e~l~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~  305 (499)
T KOG0281|consen  234 TGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNT--G--EPLNTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMA  305 (499)
T ss_pred             hcCCCcEEeeecc--ceEEEecCCCceEEEEeccC--C--chhhHHhhhcceeEEEEEe--CCEEEEecCCceeEEEecc
Confidence            3578999999985  46999999999999999988  6  8889999999999999998  5589999999999999952


Q ss_pred             CCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEe
Q psy11529         86 NDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCG  165 (244)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~  165 (244)
                       .+........+.+|...|+.+.|+  .+++++++.|.+|++|++.+...    .....+|+..|.|+.+.  ++++++|
T Consensus       306 -sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~ef----vRtl~gHkRGIAClQYr--~rlvVSG  376 (499)
T KOG0281|consen  306 -SPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTCEF----VRTLNGHKRGIACLQYR--DRLVVSG  376 (499)
T ss_pred             -CchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEeccceee----ehhhhcccccceehhcc--CeEEEec
Confidence             222222333456899999999996  46999999999999999999864    67778899999998875  8899999


Q ss_pred             eCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCCC
Q psy11529        166 STDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQV  242 (244)
Q Consensus       166 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~  242 (244)
                      +.|.+|++||+                  ..|.++..+++|   ..-|.++.|  |.+.+++|+.||+|+|||+...
T Consensus       377 SSDntIRlwdi------------------~~G~cLRvLeGH---EeLvRciRF--d~krIVSGaYDGkikvWdl~aa  430 (499)
T KOG0281|consen  377 SSDNTIRLWDI------------------ECGACLRVLEGH---EELVRCIRF--DNKRIVSGAYDGKIKVWDLQAA  430 (499)
T ss_pred             CCCceEEEEec------------------cccHHHHHHhch---HHhhhheee--cCceeeeccccceEEEEecccc
Confidence            99999999999                  789999999999   999999999  6788999999999999999764

>KOG0316|consensus

Probab=100.00  E-value=3e-31  Score=178.42  Aligned_cols=204  Identities=14%  Similarity=0.196  Sum_probs=176.0

Q ss_pred             EEeCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEee
Q psy11529          5 YSFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQ   84 (244)
Q Consensus         5 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~   84 (244)
                      +.-|..+|..++.+.|+..|++|+.|..+.+||+++  +  +..+.+.+|.+.|+.++|+.+...+++|+.|.++++|| 
T Consensus        55 YsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~T--G--kv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wD-  129 (307)
T KOG0316|consen   55 YSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNT--G--KVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWD-  129 (307)
T ss_pred             ecCCCceeeeccccccccccccCCCCceEEEEEccc--C--eeeeecccccceeeEEEecCcceEEEeccccceeEEEE-
Confidence            445688999999999999999999999999999988  6  89999999999999999999999999999999999999 


Q ss_pred             eCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEE
Q psy11529         85 NNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGC  164 (244)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~  164 (244)
                       -+.....+...+......|.++..+  +..++.|+.||+++.||++.++.      .......+|++++|++|++..+.
T Consensus       130 -CRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~DGtvRtydiR~G~l------~sDy~g~pit~vs~s~d~nc~La  200 (307)
T KOG0316|consen  130 -CRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGTVRTYDIRKGTL------SSDYFGHPITSVSFSKDGNCSLA  200 (307)
T ss_pred             -cccCCCCccchhhhhcCceeEEEec--ccEEEeeccCCcEEEEEeeccee------ehhhcCCcceeEEecCCCCEEEE
Confidence             5666666666667778889999886  45899999999999999999864      22334469999999999999999


Q ss_pred             eeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCC
Q psy11529        165 GSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQ  241 (244)
Q Consensus       165 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~  241 (244)
                      ++.|+++++.|-                  .+++.+..+.+|.. ...-...+++.....+++|++||.|++||+.+
T Consensus       201 ~~l~stlrLlDk------------------~tGklL~sYkGhkn-~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd  258 (307)
T KOG0316|consen  201 SSLDSTLRLLDK------------------ETGKLLKSYKGHKN-MEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVD  258 (307)
T ss_pred             eeccceeeeccc------------------chhHHHHHhccccc-ceeeeeeeecccceeEEeccCCceEEEEEecc
Confidence            999999999998                  78999999999832 22233456667777999999999999999865

>KOG0319|consensus

Probab=100.00  E-value=1.8e-31  Score=204.51  Aligned_cols=205  Identities=17%  Similarity=0.191  Sum_probs=179.9

Q ss_pred             EEeCCCceEEEEEcCCC-CeEEEecCCCeEEEeeeccCCC-cc----eeeeeeccCCCceEEEEeCCCCCeEEEEeCCcc
Q psy11529          5 YSFGINPVTTHAWNNTR-QQLAFTPNNQEVHLYQYEKAAN-DW----SQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRN   78 (244)
Q Consensus         5 ~~~~~~~v~~~~~~~~~-~~l~~~~~d~~v~v~~~~~~~~-~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~   78 (244)
                      .+-|.+.|.+++++..+ ..|++++.|.++++|++....+ ..    ....+...|...|++++++|+.+++++|+.|.+
T Consensus       407 ~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDkt  486 (775)
T KOG0319|consen  407 ANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKT  486 (775)
T ss_pred             hcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccc
Confidence            34578999999997754 4789999999999999865111 00    111233569999999999999999999999999


Q ss_pred             EEEEeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCC
Q psy11529         79 AYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPN  158 (244)
Q Consensus        79 i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~  158 (244)
                      .+||+  ++...  ..-.+.+|...++++.|+|..+.+++++.|++|+||.+.+...    ...+.+|...|..+.|-.+
T Consensus       487 aKiW~--le~~~--l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSC----lkT~eGH~~aVlra~F~~~  558 (775)
T KOG0319|consen  487 AKIWD--LEQLR--LLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSC----LKTFEGHTSAVLRASFIRN  558 (775)
T ss_pred             eeeec--ccCce--EEEEeeCCccceEEEEeccccceeEeccCCceEEEEEecccee----eeeecCccceeEeeeeeeC
Confidence            99999  67544  4556689999999999999999999999999999999999864    7788999999999999999


Q ss_pred             CCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEe
Q psy11529        159 NHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRM  238 (244)
Q Consensus       159 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd  238 (244)
                      ++.|++++.||.|++|++                  ++.+++.++..|   ...|.+++.+|.+..+++|+.||.|.+|.
T Consensus       559 ~~qliS~~adGliKlWni------------------kt~eC~~tlD~H---~DrvWaL~~~~~~~~~~tgg~Dg~i~~wk  617 (775)
T KOG0319|consen  559 GKQLISAGADGLIKLWNI------------------KTNECEMTLDAH---NDRVWALSVSPLLDMFVTGGGDGRIIFWK  617 (775)
T ss_pred             CcEEEeccCCCcEEEEec------------------cchhhhhhhhhc---cceeEEEeecCccceeEecCCCeEEEEee
Confidence            999999999999999999                  889999999999   99999999999999999999999999995

>KOG0305|consensus

Probab=100.00  E-value=6.1e-31  Score=198.80  Aligned_cols=223  Identities=19%  Similarity=0.309  Sum_probs=181.0

Q ss_pred             eeEEeCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeecc-CCCceEEEEeCCCCCeEEEEeCCccEEE
Q psy11529          3 EVYSFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDG-HDLKVTGIDWAPNTNRIVTCSADRNAYV   81 (244)
Q Consensus         3 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~i   81 (244)
                      +++.++++.|+++.|+++|++|++|..+|.|.|||...  .  +.+..+.+ |...|.+++|.  +..+.+|+.|+.|..
T Consensus       211 ~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~--~--k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~  284 (484)
T KOG0305|consen  211 ELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKE--Q--KKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILN  284 (484)
T ss_pred             EeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhh--c--cccccccCCcCceeEEEecc--CceEEEecCCCcEEE
Confidence            45666689999999999999999999999999999976  3  67777887 99999999998  678899999999999


Q ss_pred             EeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecC-CCC
Q psy11529         82 WTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHP-NNH  160 (244)
Q Consensus        82 wd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p-~~~  160 (244)
                      +|+  +..+.... .+.+|...|..+.|++|++++|+|+.|+.+.|||.....+    ......|.+.|.+++|+| ...
T Consensus       285 ~dv--R~~~~~~~-~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p----~~~~~~H~aAVKA~awcP~q~~  357 (484)
T KOG0305|consen  285 HDV--RISQHVVS-TLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEP----KFTFTEHTAAVKALAWCPWQSG  357 (484)
T ss_pred             EEE--ecchhhhh-hhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccc----cEEEeccceeeeEeeeCCCccC
Confidence            995  44433223 3677999999999999999999999999999999965554    677788999999999999 556


Q ss_pred             EEEEee--CCCeEEEEEeeecccccCCCCCC------CCc-------------------cccccceeEEecCCCCCCCCe
Q psy11529        161 LLGCGS--TDFKVRVFSAYIKDIESAPQSTN------WGS-------------------KSTLGNCLVELNNSSSGGGWI  213 (244)
Q Consensus       161 ~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~------~~~-------------------~~~~~~~~~~~~~~~~~~~~v  213 (244)
                      +||+|+  .|+.|++||..+...........      |..                   .-.+.+.+..+.+|   ...|
T Consensus       358 lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH---~~RV  434 (484)
T KOG0305|consen  358 LLATGGGSADRCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGH---TSRV  434 (484)
T ss_pred             ceEEcCCCcccEEEEEEcCCCcEecccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCC---ccee
Confidence            888865  58999999986443322111000      000                   12334566778888   8999


Q ss_pred             EEEEEecCCCEEEEeeCCCcEEEEeCCC
Q psy11529        214 HSVAFSKDGNKLCWTSHDGSINVRMSQQ  241 (244)
Q Consensus       214 ~~~~~s~~~~~l~~~~~dg~i~vwd~~~  241 (244)
                      ..++++|||..+++|+.|.++++|++-.
T Consensus       435 l~la~SPdg~~i~t~a~DETlrfw~~f~  462 (484)
T KOG0305|consen  435 LYLALSPDGETIVTGAADETLRFWNLFD  462 (484)
T ss_pred             EEEEECCCCCEEEEecccCcEEeccccC
Confidence            9999999999999999999999999854

>KOG0292|consensus

Probab=100.00  E-value=2.1e-31  Score=208.32  Aligned_cols=226  Identities=17%  Similarity=0.207  Sum_probs=189.1

Q ss_pred             CceeEEeCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEE
Q psy11529          1 MAEVYSFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAY   80 (244)
Q Consensus         1 m~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~   80 (244)
                      |...+.-....|..++|+|....++++-..|.|++||..-  +  .++..+..|.++|..++|+|.+.++++|++|-.|+
T Consensus         1 mltkfEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM--~--tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIk   76 (1202)
T KOG0292|consen    1 MLTKFESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRM--G--TLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIK   76 (1202)
T ss_pred             CcchhhcccccccceecCCCCCEEEEeecCceeeeehhhh--h--hHHhhhhccCCccceeeecCCCCeEEecCCccEEE
Confidence            3444556688999999999999999999999999999876  4  78889999999999999999999999999999999


Q ss_pred             EEeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCC
Q psy11529         81 VWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNH  160 (244)
Q Consensus        81 iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~  160 (244)
                      +|+  ..+.++  .+++.+|-..|+.+.|++.-.+++++++|.+|+||++.+++.    .....+|...|.|..|+|...
T Consensus        77 VWn--Yk~rrc--lftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~----iavltGHnHYVMcAqFhptED  148 (1202)
T KOG0292|consen   77 VWN--YKTRRC--LFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKC----IAVLTGHNHYVMCAQFHPTED  148 (1202)
T ss_pred             EEe--ccccee--hhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCce----EEEEecCceEEEeeccCCccc
Confidence            999  677664  566789999999999999999999999999999999999975    777889999999999999999


Q ss_pred             EEEEeeCCCeEEEEEeeecccccCCCC--------CCCCc---cccccceeEEecCCCCCCCCeEEEEEecCCCEEEEee
Q psy11529        161 LLGCGSTDFKVRVFSAYIKDIESAPQS--------TNWGS---KSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTS  229 (244)
Q Consensus       161 ~l~~~~~dg~i~i~d~~~~~~~~~~~~--------~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~  229 (244)
                      +++++|-|.+|+|||+..-......+.        .....   .....-..+.+.+|   ...|+-++|+|.-.+|++|+
T Consensus       149 lIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGH---DRGVNwaAfhpTlpliVSG~  225 (1202)
T KOG0292|consen  149 LIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGH---DRGVNWAAFHPTLPLIVSGA  225 (1202)
T ss_pred             eEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeeccc---ccccceEEecCCcceEEecC
Confidence            999999999999999853222221111        00000   00112233567888   89999999999999999999


Q ss_pred             CCCcEEEEeCCC
Q psy11529        230 HDGSINVRMSQQ  241 (244)
Q Consensus       230 ~dg~i~vwd~~~  241 (244)
                      +|..|++|.+..
T Consensus       226 DDRqVKlWrmne  237 (1202)
T KOG0292|consen  226 DDRQVKLWRMNE  237 (1202)
T ss_pred             CcceeeEEEecc
Confidence            999999998764

>KOG1446|consensus

Probab=100.00  E-value=1.4e-29  Score=176.76  Aligned_cols=211  Identities=18%  Similarity=0.240  Sum_probs=167.0

Q ss_pred             CCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCC----------------------------------------Cccee
Q psy11529          8 GINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAA----------------------------------------NDWSQ   47 (244)
Q Consensus         8 ~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~----------------------------------------~~~~~   47 (244)
                      ....|.++.|+++|.++++++.|..++|||.....                                        ..-+.
T Consensus        13 ~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNky   92 (311)
T KOG1446|consen   13 TNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKY   92 (311)
T ss_pred             CCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCce
Confidence            36899999999999999999999999999976511                                        00123


Q ss_pred             eeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEE
Q psy11529         48 LDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISV  127 (244)
Q Consensus        48 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i  127 (244)
                      ++.+.||...|++++.+|-+..+++++.|++|++||  ++..++...+.    ...-..++|.|+|-++|++.....|++
T Consensus        93 lRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWD--lR~~~cqg~l~----~~~~pi~AfDp~GLifA~~~~~~~IkL  166 (311)
T KOG1446|consen   93 LRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWD--LRVKKCQGLLN----LSGRPIAAFDPEGLIFALANGSELIKL  166 (311)
T ss_pred             EEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeE--ecCCCCceEEe----cCCCcceeECCCCcEEEEecCCCeEEE
Confidence            455679999999999999889999999999999999  55555444443    233346899999999999999889999


Q ss_pred             EEeecCCC-ceEEEeeecCCCCceeEEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCC
Q psy11529        128 CYFESEND-WWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNS  206 (244)
Q Consensus       128 ~d~~~~~~-~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (244)
                      ||++.-.. -+.......+.....+.+.|+|||++|+.++..+.+++.|.                  -.|....++..+
T Consensus       167 yD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDA------------------f~G~~~~tfs~~  228 (311)
T KOG1446|consen  167 YDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDA------------------FDGTVKSTFSGY  228 (311)
T ss_pred             EEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEc------------------cCCcEeeeEeec
Confidence            99998643 11222222244678999999999999999999999999998                  667777777766


Q ss_pred             CCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCCC
Q psy11529        207 SSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQV  242 (244)
Q Consensus       207 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~  242 (244)
                      ......--...|+||++++++|+.||+|.+|++++.
T Consensus       229 ~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg  264 (311)
T KOG1446|consen  229 PNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETG  264 (311)
T ss_pred             cCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCC
Confidence            321223367899999999999999999999999864

>KOG0289|consensus

Probab=100.00  E-value=9.4e-31  Score=189.71  Aligned_cols=209  Identities=17%  Similarity=0.245  Sum_probs=182.4

Q ss_pred             eEEeCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEe
Q psy11529          4 VYSFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWT   83 (244)
Q Consensus         4 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd   83 (244)
                      +|......++++...|....+++|+.|..+.++|...  +  +.+.+++||...|+.+.|+|+...+++++.|..|++|.
T Consensus       214 LH~t~~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s--~--q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws  289 (506)
T KOG0289|consen  214 LHSTSTPGITALDIIPSSSKILTGGEDKTAVLFDKPS--N--QILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWS  289 (506)
T ss_pred             eeccCCCCeeEEeecCCCCcceecCCCCceEEEecch--h--hhhhhccCcceEEEEEEeccchhheeecCCcceEEeec
Confidence            4555678899999999878899999999999999977  5  78899999999999999999999999999999999999


Q ss_pred             eeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEE
Q psy11529         84 QNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLG  163 (244)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~  163 (244)
                        ......  ......|..+|+.+..+|.|.||++++.|++..+.|++++..  ..........-.+++.+|+|||.+|.
T Consensus       290 --~~~~s~--~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~--lt~vs~~~s~v~~ts~~fHpDgLifg  363 (506)
T KOG0289|consen  290 --VPLSSE--PTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQ--LTVVSDETSDVEYTSAAFHPDGLIFG  363 (506)
T ss_pred             --cccccC--ccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcE--EEEEeeccccceeEEeeEcCCceEEe
Confidence              444432  333467999999999999999999999999999999999976  22222223345799999999999999


Q ss_pred             EeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCCCC
Q psy11529        164 CGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQVL  243 (244)
Q Consensus       164 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~  243 (244)
                      +|..||.++|||+                  ..+..+..|.+|   .++|..++|+.+|.||+++++|+.|++||++++.
T Consensus       364 tgt~d~~vkiwdl------------------ks~~~~a~Fpgh---t~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~  422 (506)
T KOG0289|consen  364 TGTPDGVVKIWDL------------------KSQTNVAKFPGH---TGPVKAISFSENGYWLATAADDGSVKLWDLRKLK  422 (506)
T ss_pred             ccCCCceEEEEEc------------------CCccccccCCCC---CCceeEEEeccCceEEEEEecCCeEEEEEehhhc
Confidence            9999999999999                  677788999999   9999999999999999999999999999999763

>PTZ00421 coronin; Provisional

Probab=100.00  E-value=7.2e-30  Score=198.64  Aligned_cols=205  Identities=16%  Similarity=0.202  Sum_probs=159.1

Q ss_pred             ceEEEEEcCCCCeEEEecCCCeEEEeeeccCC--------Cc-ceeeeeeccCCCceEEEEeCC-CCCeEEEEeCCccEE
Q psy11529         11 PVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAA--------ND-WSQLDVLDGHDLKVTGIDWAP-NTNRIVTCSADRNAY   80 (244)
Q Consensus        11 ~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~--------~~-~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~   80 (244)
                      .|.....++++..+++++.+.....|+..+..        ++ ......+.+|.+.|.+++|+| ++++|++++.|++|+
T Consensus        22 ~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIk  101 (493)
T PTZ00421         22 NVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIM  101 (493)
T ss_pred             ccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEE
Confidence            44555566776667777666666677654310        00 011124678999999999999 889999999999999


Q ss_pred             EEeeeCCCCCc-----eeeEEEeccCcceEEEEECCCC-CeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEE
Q psy11529         81 VWTQNNDDKKW-----KPTLVLLRINRAATCVKWSPLE-NKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLD  154 (244)
Q Consensus        81 iwd~~~~~~~~-----~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~  154 (244)
                      +||  +.++..     .+...+.+|...|.+++|+|++ ++|++++.|++|+|||++++..    ......|...|.+++
T Consensus       102 IWd--i~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~----~~~l~~h~~~V~sla  175 (493)
T PTZ00421        102 GWG--IPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKA----VEVIKCHSDQITSLE  175 (493)
T ss_pred             EEe--cCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeE----EEEEcCCCCceEEEE
Confidence            999  544321     2344567899999999999985 6899999999999999998754    445567888999999


Q ss_pred             ecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCC-CeEEEEEecCCCEEEEee----
Q psy11529        155 WHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGG-WIHSVAFSKDGNKLCWTS----  229 (244)
Q Consensus       155 ~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~~~----  229 (244)
                      |+|+|++|++++.|+.|++||+                  .+++.+..+..|   .. ....+.|.+++..+++++    
T Consensus       176 ~spdG~lLatgs~Dg~IrIwD~------------------rsg~~v~tl~~H---~~~~~~~~~w~~~~~~ivt~G~s~s  234 (493)
T PTZ00421        176 WNLDGSLLCTTSKDKKLNIIDP------------------RDGTIVSSVEAH---ASAKSQRCLWAKRKDLIITLGCSKS  234 (493)
T ss_pred             EECCCCEEEEecCCCEEEEEEC------------------CCCcEEEEEecC---CCCcceEEEEcCCCCeEEEEecCCC
Confidence            9999999999999999999999                  567777888877   44 355788999888777654    


Q ss_pred             CCCcEEEEeCCCC
Q psy11529        230 HDGSINVRMSQQV  242 (244)
Q Consensus       230 ~dg~i~vwd~~~~  242 (244)
                      .|+.|++||+++.
T Consensus       235 ~Dr~VklWDlr~~  247 (493)
T PTZ00421        235 QQRQIMLWDTRKM  247 (493)
T ss_pred             CCCeEEEEeCCCC
Confidence            4789999999864

>KOG0276|consensus

Probab=100.00  E-value=1.3e-30  Score=196.89  Aligned_cols=204  Identities=17%  Similarity=0.195  Sum_probs=184.8

Q ss_pred             eCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeC
Q psy11529          7 FGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNN   86 (244)
Q Consensus         7 ~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~   86 (244)
                      .+.+.|.++.|+|....++++-.+|.|.||+.++  .  ..+..+.-.+.+|.+.+|-+..+.+++|++|..|++|+  .
T Consensus        11 ~rSdRVKsVd~HPtePw~la~LynG~V~IWnyet--q--tmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfn--y   84 (794)
T KOG0276|consen   11 SRSDRVKSVDFHPTEPWILAALYNGDVQIWNYET--Q--TMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFN--Y   84 (794)
T ss_pred             ccCCceeeeecCCCCceEEEeeecCeeEEEeccc--c--eeeeeeeecccchhhheeeeccceEEEecCCceEEEEe--c
Confidence            3688999999999999999999999999999988  4  67777887789999999999999999999999999999  7


Q ss_pred             CCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecC-CCCEEEEe
Q psy11529         87 DDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHP-NNHLLGCG  165 (244)
Q Consensus        87 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~l~~~  165 (244)
                      .+.+.  ...+..|...+++++.+|...+++++++|-+|++||++..   |.+.+.+.+|...|.+++|+| |.+.+|++
T Consensus        85 nt~ek--V~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~---wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~  159 (794)
T KOG0276|consen   85 NTGEK--VKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENE---WACEQTFEGHEHYVMQVAFNPKDPNTFASA  159 (794)
T ss_pred             cccee--eEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCc---eeeeeEEcCcceEEEEEEecCCCccceeee
Confidence            77764  4555789999999999999999999999999999999986   568899999999999999999 66899999


Q ss_pred             eCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCC--CEEEEeeCCCcEEEEeCCCC
Q psy11529        166 STDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDG--NKLCWTSHDGSINVRMSQQV  242 (244)
Q Consensus       166 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~~~~~dg~i~vwd~~~~  242 (244)
                      +-|++|++|.+                  -...+..++.+|   ...|+++.|-+-|  .+|++|++|.+|+|||.++.
T Consensus       160 sLDrTVKVWsl------------------gs~~~nfTl~gH---ekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk  217 (794)
T KOG0276|consen  160 SLDRTVKVWSL------------------GSPHPNFTLEGH---EKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTK  217 (794)
T ss_pred             eccccEEEEEc------------------CCCCCceeeecc---ccCcceEEeccCCCcceEEecCCCceEEEeecchH
Confidence            99999999999                  567788899999   9999999998854  59999999999999999863

>KOG0313|consensus

Probab=100.00  E-value=1.6e-30  Score=185.45  Aligned_cols=207  Identities=20%  Similarity=0.320  Sum_probs=176.8

Q ss_pred             eCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccC---------------------CCcceeeeeeccCCCceEEEEeCC
Q psy11529          7 FGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKA---------------------ANDWSQLDVLDGHDLKVTGIDWAP   65 (244)
Q Consensus         7 ~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~---------------------~~~~~~~~~~~~~~~~v~~~~~~~   65 (244)
                      -|++.|-+++..++|.++++|+.|..|.||+.+..                     .+.-.++.++.+|.++|.++.|++
T Consensus       191 GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d  270 (423)
T KOG0313|consen  191 GHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD  270 (423)
T ss_pred             ccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC
Confidence            57899999999999999999999999999993210                     011235667889999999999998


Q ss_pred             CCCeEEEEeCCccEEEEeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecC
Q psy11529         66 NTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKP  145 (244)
Q Consensus        66 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~  145 (244)
                       ...+++++.|.+|+.||  ++++.....+.   .+..++++.++|..++|++|+.|..+++||.+++.. ......+.+
T Consensus       271 -~~v~yS~SwDHTIk~WD--letg~~~~~~~---~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~g-s~v~~s~~g  343 (423)
T KOG0313|consen  271 -ATVIYSVSWDHTIKVWD--LETGGLKSTLT---TNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDG-SVVSQSLIG  343 (423)
T ss_pred             -CCceEeecccceEEEEE--eecccceeeee---cCcceeEeecccccceeeecCCCCceeecCCCCCCC-ceeEEeeec
Confidence             67889999999999999  77777544433   567899999999999999999999999999999865 456677889


Q ss_pred             CCCceeEEEecCCC-CEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCE
Q psy11529        146 IKSTITCLDWHPNN-HLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNK  224 (244)
Q Consensus       146 ~~~~v~~~~~~p~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~  224 (244)
                      |++.|.++.|+|.. .+|++++.|+++++||+|                 ....+++.+.+|   ...|.++.|+ ++.+
T Consensus       344 H~nwVssvkwsp~~~~~~~S~S~D~t~klWDvR-----------------S~k~plydI~~h---~DKvl~vdW~-~~~~  402 (423)
T KOG0313|consen  344 HKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVR-----------------STKAPLYDIAGH---NDKVLSVDWN-EGGL  402 (423)
T ss_pred             chhhhhheecCCCCceEEEEEecCCeEEEEEec-----------------cCCCcceeeccC---CceEEEEecc-CCce
Confidence            99999999999965 578999999999999996                 345589999999   9999999997 6678


Q ss_pred             EEEeeCCCcEEEEeCCC
Q psy11529        225 LCWTSHDGSINVRMSQQ  241 (244)
Q Consensus       225 l~~~~~dg~i~vwd~~~  241 (244)
                      |++|+.|.+|+|+.-..
T Consensus       403 IvSGGaD~~l~i~~~~~  419 (423)
T KOG0313|consen  403 IVSGGADNKLRIFKGSP  419 (423)
T ss_pred             EEeccCcceEEEecccc
Confidence            99999999999987654

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=1.2e-29  Score=187.45  Aligned_cols=199  Identities=21%  Similarity=0.331  Sum_probs=170.8

Q ss_pred             eCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeC
Q psy11529          7 FGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNN   86 (244)
Q Consensus         7 ~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~   86 (244)
                      .+...|.++.|+|+++++++++.++.|.+|++..  .  +....+..|...|.+++|+|++.++++++.++.+++||  .
T Consensus        91 ~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~--~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d--~  164 (289)
T cd00200          91 GHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVET--G--KCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWD--L  164 (289)
T ss_pred             ccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCC--c--EEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEE--c
Confidence            3567899999999988998888899999999985  3  66777778999999999999988888888899999999  6


Q ss_pred             CCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEee
Q psy11529         87 DDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGS  166 (244)
Q Consensus        87 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~  166 (244)
                      ..++...  .+..+...+.++.|+|+++.+++++.++.+++||++..+.    ......+...+.+++|+|++.++++++
T Consensus       165 ~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~----~~~~~~~~~~i~~~~~~~~~~~~~~~~  238 (289)
T cd00200         165 RTGKCVA--TLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKC----LGTLRGHENGVNSVAFSPDGYLLASGS  238 (289)
T ss_pred             cccccce--eEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCce----ecchhhcCCceEEEEEcCCCcEEEEEc
Confidence            6555433  3346777899999999999999999999999999987654    334446677999999999988999888


Q ss_pred             CCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEe
Q psy11529        167 TDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRM  238 (244)
Q Consensus       167 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd  238 (244)
                      .+|.|++||+                  ..++....+..|   ...+.+++|+|++++|++++.||.|++|+
T Consensus       239 ~~~~i~i~~~------------------~~~~~~~~~~~~---~~~i~~~~~~~~~~~l~~~~~d~~i~iw~  289 (289)
T cd00200         239 EDGTIRVWDL------------------RTGECVQTLSGH---TNSVTSLAWSPDGKRLASGSADGTIRIWD  289 (289)
T ss_pred             CCCcEEEEEc------------------CCceeEEEcccc---CCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence            8999999998                  556777777777   88999999999999999999999999996

>KOG0643|consensus

Probab=99.98  E-value=7.5e-30  Score=174.53  Aligned_cols=208  Identities=19%  Similarity=0.200  Sum_probs=176.7

Q ss_pred             EEeCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEee
Q psy11529          5 YSFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQ   84 (244)
Q Consensus         5 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~   84 (244)
                      .+-|+.+++.+.++.+|.+|.+++.|....||-..+  +  +.+.++.+|.+.|++++.+-+.+++++|+.|.++++|| 
T Consensus         6 l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~n--G--erlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWD-   80 (327)
T KOG0643|consen    6 LQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLN--G--ERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWD-   80 (327)
T ss_pred             cccCccccceEEecCCCcEEEEecCCCCceEEEecC--C--ceeeeecCCCceEEEEEecCCcceeeeccccceeEEEE-
Confidence            345899999999999999999999999999998744  3  88999999999999999999999999999999999999 


Q ss_pred             eCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeC-----CCeEEEEEeecCCC---ceEEEeeecCCCCceeEEEec
Q psy11529         85 NNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSG-----ARLISVCYFESEND---WWVAKHIKKPIKSTITCLDWH  156 (244)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----d~~i~i~d~~~~~~---~~~~~~~~~~~~~~v~~~~~~  156 (244)
                       .++|+.+...   ..+..|..+.|+++|++++.+.+     .+.|.++|++....   ...+......+.+.++.+-|.
T Consensus        81 -v~tGk~la~~---k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg  156 (327)
T KOG0643|consen   81 -VETGKQLATW---KTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWG  156 (327)
T ss_pred             -cCCCcEEEEe---ecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeec
Confidence             8999854443   46789999999999999888765     46799999984431   011123334455899999999


Q ss_pred             CCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCcccccc-ceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEE
Q psy11529        157 PNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLG-NCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSIN  235 (244)
Q Consensus       157 p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~  235 (244)
                      |-+++|++|.+||.|.+||+                  .++ +.+.....|   ...|+.++++||..++++++.|.+-+
T Consensus       157 ~l~~~ii~Ghe~G~is~~da------------------~~g~~~v~s~~~h---~~~Ind~q~s~d~T~FiT~s~Dttak  215 (327)
T KOG0643|consen  157 PLGETIIAGHEDGSISIYDA------------------RTGKELVDSDEEH---SSKINDLQFSRDRTYFITGSKDTTAK  215 (327)
T ss_pred             ccCCEEEEecCCCcEEEEEc------------------ccCceeeechhhh---ccccccccccCCcceEEecccCccce
Confidence            99999999999999999999                  444 455666677   88999999999999999999999999


Q ss_pred             EEeCCCC
Q psy11529        236 VRMSQQV  242 (244)
Q Consensus       236 vwd~~~~  242 (244)
                      +||++++
T Consensus       216 l~D~~tl  222 (327)
T KOG0643|consen  216 LVDVRTL  222 (327)
T ss_pred             eeeccce
Confidence            9999876

>KOG0277|consensus

Probab=99.98  E-value=3.7e-31  Score=179.66  Aligned_cols=203  Identities=16%  Similarity=0.274  Sum_probs=171.2

Q ss_pred             EeCCCceEEEEEcC-CCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCC-CCCeEEEEeCCccEEEEe
Q psy11529          6 SFGINPVTTHAWNN-TRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAP-NTNRIVTCSADRNAYVWT   83 (244)
Q Consensus         6 ~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd   83 (244)
                      +-|..+|.++.|++ +++.+++++.|++|++|+...  +  ..+.++.+|...|...+|+| .++.+++++.|+++++||
T Consensus       101 kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r--~--~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwd  176 (311)
T KOG0277|consen  101 KEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNR--P--NSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWD  176 (311)
T ss_pred             HhhhhheEEeccccccceeEEeeccCCceEeecCCC--C--cceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEE
Confidence            34689999999999 556788889999999999876  4  67889999999999999999 788999999999999999


Q ss_pred             eeCCCCCceeeEEEeccCcceEEEEECC-CCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCC-CE
Q psy11529         84 QNNDDKKWKPTLVLLRINRAATCVKWSP-LENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNN-HL  161 (244)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~  161 (244)
                      ++.. ++   .+.++.|...+.++.|+. +.+.+++|+.|+.|++||++.-+.   +.....+|.-.|..++|+|.. .+
T Consensus       177 vr~~-gk---~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~---pl~eL~gh~~AVRkvk~Sph~~~l  249 (311)
T KOG0277|consen  177 VRSP-GK---FMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRT---PLFELNGHGLAVRKVKFSPHHASL  249 (311)
T ss_pred             ecCC-Cc---eeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccc---cceeecCCceEEEEEecCcchhhH
Confidence            6433 44   334677889999999987 467799999999999999998765   556668888999999999965 68


Q ss_pred             EEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEec-CCCEEEEeeCCCcEEEEeC
Q psy11529        162 LGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSK-DGNKLCWTSHDGSINVRMS  239 (244)
Q Consensus       162 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vwd~  239 (244)
                      |++++.|-+++|||...                 ....+.+...|   ..-+..+.||+ ++.++|+++-|+.++||+.
T Consensus       250 LaSasYDmT~riw~~~~-----------------~ds~~e~~~~H---tEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  250 LASASYDMTVRIWDPER-----------------QDSAIETVDHH---TEFVCGLDWSLFDPGQVASTGWDELLYVWNP  308 (311)
T ss_pred             hhhccccceEEeccccc-----------------chhhhhhhhcc---ceEEeccccccccCceeeecccccceeeecc
Confidence            99999999999999831                 22344445555   88899999998 6779999999999999984

>KOG0772|consensus

Probab=99.98  E-value=9.6e-31  Score=193.55  Aligned_cols=216  Identities=15%  Similarity=0.209  Sum_probs=164.0

Q ss_pred             CCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeec-cCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeC
Q psy11529          8 GINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLD-GHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNN   86 (244)
Q Consensus         8 ~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~   86 (244)
                      |...|.++++.|.|.+|++|+.|..|++||+.+.....+..+.+. .....|+++.|++.|..|++.+.....+|+|   
T Consensus       166 gtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~D---  242 (641)
T KOG0772|consen  166 GTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLD---  242 (641)
T ss_pred             CceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEc---
Confidence            478899999999999999999999999999976322222222222 2356899999999999888888888999999   


Q ss_pred             CCCCceee-----------EEEeccCcceEEEEECCC-CCeEEEeeCCCeEEEEEeecCCCceEEEeee--cCCCCceeE
Q psy11529         87 DDKKWKPT-----------LVLLRINRAATCVKWSPL-ENKFAAGSGARLISVCYFESENDWWVAKHIK--KPIKSTITC  152 (244)
Q Consensus        87 ~~~~~~~~-----------~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~--~~~~~~v~~  152 (244)
                      +.|.....           ....+|...++|.+|+|. ...+++++.|++++|||++..+.........  .+..-.++.
T Consensus       243 RdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~ts  322 (641)
T KOG0772|consen  243 RDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTS  322 (641)
T ss_pred             cCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCcee
Confidence            34432211           133578889999999997 4569999999999999998776422221111  223457899


Q ss_pred             EEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEe-cCCCCCCCCeEEEEEecCCCEEEEeeCC
Q psy11529        153 LDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVEL-NNSSSGGGWIHSVAFSKDGNKLCWTSHD  231 (244)
Q Consensus       153 ~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~s~~~~~l~~~~~d  231 (244)
                      ++|+|||++||+|+.||.|.+|+.+...                ..+...+ .+| .....|++++||+||++|++-+.|
T Consensus       323 C~~nrdg~~iAagc~DGSIQ~W~~~~~~----------------v~p~~~vk~AH-~~g~~Itsi~FS~dg~~LlSRg~D  385 (641)
T KOG0772|consen  323 CAWNRDGKLIAAGCLDGSIQIWDKGSRT----------------VRPVMKVKDAH-LPGQDITSISFSYDGNYLLSRGFD  385 (641)
T ss_pred             eecCCCcchhhhcccCCceeeeecCCcc----------------cccceEeeecc-CCCCceeEEEeccccchhhhccCC
Confidence            9999999999999999999999974321                2222323 333 224589999999999999999999


Q ss_pred             CcEEEEeCCCCC
Q psy11529        232 GSINVRMSQQVL  243 (244)
Q Consensus       232 g~i~vwd~~~~~  243 (244)
                      +++++||++++.
T Consensus       386 ~tLKvWDLrq~k  397 (641)
T KOG0772|consen  386 DTLKVWDLRQFK  397 (641)
T ss_pred             Cceeeeeccccc
Confidence            999999999863

>KOG0264|consensus

Probab=99.98  E-value=1.4e-30  Score=189.52  Aligned_cols=213  Identities=19%  Similarity=0.318  Sum_probs=173.6

Q ss_pred             eCCCceEEEEEcCCCC-eEEEecCCCeEEEeeeccCCC------cceeeeeeccCCCceEEEEeCC-CCCeEEEEeCCcc
Q psy11529          7 FGINPVTTHAWNNTRQ-QLAFTPNNQEVHLYQYEKAAN------DWSQLDVLDGHDLKVTGIDWAP-NTNRIVTCSADRN   78 (244)
Q Consensus         7 ~~~~~v~~~~~~~~~~-~l~~~~~d~~v~v~~~~~~~~------~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~   78 (244)
                      .|.+.|+.+.+.|... .+|+.+..+.|.|||......      +..+-..+.+|+..-.+++|++ ..-+|++++.|+.
T Consensus       122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~  201 (422)
T KOG0264|consen  122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHT  201 (422)
T ss_pred             cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCc
Confidence            4689999999999655 566678889999999865221      2233447889998888999999 4457899999999


Q ss_pred             EEEEeeeCCCC---CceeeEEEeccCcceEEEEECCC-CCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEE
Q psy11529         79 AYVWTQNNDDK---KWKPTLVLLRINRAATCVKWSPL-ENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLD  154 (244)
Q Consensus        79 i~iwd~~~~~~---~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~  154 (244)
                      |++||+.....   ...+...+.+|...|..++|++. ...|++++.|+.+.|||.++..  ........+|.+.+.+++
T Consensus       202 i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~--~~~~~~~~ah~~~vn~~~  279 (422)
T KOG0264|consen  202 ICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNT--SKPSHSVKAHSAEVNCVA  279 (422)
T ss_pred             EEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCC--CCCcccccccCCceeEEE
Confidence            99999632222   23455667789999999999995 6678999999999999999631  234667788999999999


Q ss_pred             ecC-CCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCC-CEEEEeeCCC
Q psy11529        155 WHP-NNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDG-NKLCWTSHDG  232 (244)
Q Consensus       155 ~~p-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg  232 (244)
                      |+| ++..||+|+.|++|++||+|                 ...+++.++.+|   ...|.++.|||+. ..|++++.|+
T Consensus       280 fnp~~~~ilAT~S~D~tV~LwDlR-----------------nL~~~lh~~e~H---~dev~~V~WSPh~etvLASSg~D~  339 (422)
T KOG0264|consen  280 FNPFNEFILATGSADKTVALWDLR-----------------NLNKPLHTFEGH---EDEVFQVEWSPHNETVLASSGTDR  339 (422)
T ss_pred             eCCCCCceEEeccCCCcEEEeech-----------------hcccCceeccCC---CcceEEEEeCCCCCceeEecccCC
Confidence            999 55689999999999999997                 445688999999   9999999999954 5889999999


Q ss_pred             cEEEEeCCC
Q psy11529        233 SINVRMSQQ  241 (244)
Q Consensus       233 ~i~vwd~~~  241 (244)
                      .+.|||+..
T Consensus       340 rl~vWDls~  348 (422)
T KOG0264|consen  340 RLNVWDLSR  348 (422)
T ss_pred             cEEEEeccc
Confidence            999999975

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.98  E-value=1.6e-29  Score=210.12  Aligned_cols=203  Identities=17%  Similarity=0.231  Sum_probs=162.1

Q ss_pred             CCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCC--C-cc-eeeeeeccCCCceEEEEeCC-CCCeEEEEeCCccEEEE
Q psy11529          8 GINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAA--N-DW-SQLDVLDGHDLKVTGIDWAP-NTNRIVTCSADRNAYVW   82 (244)
Q Consensus         8 ~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~--~-~~-~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iw   82 (244)
                      |.+.|.+++|+|+|++||+|+.|+.|+||+.....  + .. .+...+. +...+.+++|+| ++.+|++++.|++|++|
T Consensus       482 ~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v~lW  560 (793)
T PLN00181        482 SSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVVQVW  560 (793)
T ss_pred             CCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCeEEEE
Confidence            57889999999999999999999999999975310  0 00 1222333 456899999988 57899999999999999


Q ss_pred             eeeCCCCCceeeEEEeccCcceEEEEECC-CCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEec-CCCC
Q psy11529         83 TQNNDDKKWKPTLVLLRINRAATCVKWSP-LENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWH-PNNH  160 (244)
Q Consensus        83 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~-p~~~  160 (244)
                      |  ..+++.  ...+.+|...|++++|+| ++.+|++|+.|+.|++||+++...    ..... +...+.++.|+ +++.
T Consensus       561 d--~~~~~~--~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~----~~~~~-~~~~v~~v~~~~~~g~  631 (793)
T PLN00181        561 D--VARSQL--VTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVS----IGTIK-TKANICCVQFPSESGR  631 (793)
T ss_pred             E--CCCCeE--EEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcE----EEEEe-cCCCeEEEEEeCCCCC
Confidence            9  666653  344567899999999997 688999999999999999988754    22222 23578999995 5789


Q ss_pred             EEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCC
Q psy11529        161 LLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQ  240 (244)
Q Consensus       161 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~  240 (244)
                      +|++|+.||.|++||++.                 ....+..+.+|   ...|.++.|. ++.+|++++.|++|++||++
T Consensus       632 ~latgs~dg~I~iwD~~~-----------------~~~~~~~~~~h---~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~  690 (793)
T PLN00181        632 SLAFGSADHKVYYYDLRN-----------------PKLPLCTMIGH---SKTVSYVRFV-DSSTLVSSSTDNTLKLWDLS  690 (793)
T ss_pred             EEEEEeCCCeEEEEECCC-----------------CCccceEecCC---CCCEEEEEEe-CCCEEEEEECCCEEEEEeCC
Confidence            999999999999999842                 12245667778   8899999997 78899999999999999986


Q ss_pred             C
Q psy11529        241 Q  241 (244)
Q Consensus       241 ~  241 (244)
                      .
T Consensus       691 ~  691 (793)
T PLN00181        691 M  691 (793)
T ss_pred             C
Confidence            3

>KOG0310|consensus

Probab=99.98  E-value=2.4e-30  Score=189.83  Aligned_cols=201  Identities=16%  Similarity=0.192  Sum_probs=172.0

Q ss_pred             CCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCC-CCCeEEEEeCCccEEEEeeeCC
Q psy11529          9 INPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAP-NTNRIVTCSADRNAYVWTQNND   87 (244)
Q Consensus         9 ~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~   87 (244)
                      ++.|.++.|-.||++||+|...|.|+|||+..  .  ..+..+.+|+.+|..+.|+| ++..+++|++|+.+++||  +.
T Consensus        68 k~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~--r--~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d--~s  141 (487)
T KOG0310|consen   68 KDVVYSVDFRSDGRLLAAGDESGHVKVFDMKS--R--VILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWD--LS  141 (487)
T ss_pred             ccceeEEEeecCCeEEEccCCcCcEEEecccc--H--HHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEE--cC
Confidence            57899999999999999999999999999655  3  56778899999999999999 566788899999999999  66


Q ss_pred             CCCceeeEEEeccCcceEEEEECCC-CCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEee
Q psy11529         88 DKKWKPTLVLLRINRAATCVKWSPL-ENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGS  166 (244)
Q Consensus        88 ~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~  166 (244)
                      +.. . ...+.+|...|+|.+|+|. +..+++|+.||.|++||.+....    ......|..+|..+.+-|.|..|++++
T Consensus       142 ~a~-v-~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~----~v~elnhg~pVe~vl~lpsgs~iasAg  215 (487)
T KOG0310|consen  142 TAY-V-QAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTS----RVVELNHGCPVESVLALPSGSLIASAG  215 (487)
T ss_pred             CcE-E-EEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCc----eeEEecCCCceeeEEEcCCCCEEEEcC
Confidence            655 3 5677899999999999996 55799999999999999998853    455566888999999999999999986


Q ss_pred             CCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCCC
Q psy11529        167 TDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQV  242 (244)
Q Consensus       167 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~  242 (244)
                       ...+++||+-                 .-++.+..+..|   ...|+|+.+..++..|++++-|+.+++||+.+.
T Consensus       216 -Gn~vkVWDl~-----------------~G~qll~~~~~H---~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~  270 (487)
T KOG0310|consen  216 -GNSVKVWDLT-----------------TGGQLLTSMFNH---NKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNY  270 (487)
T ss_pred             -CCeEEEEEec-----------------CCceehhhhhcc---cceEEEEEeecCCceEeecccccceEEEEccce
Confidence             4579999992                 134555666667   899999999999999999999999999997654

>PTZ00420 coronin; Provisional

Probab=99.98  E-value=3.8e-29  Score=195.79  Aligned_cols=184  Identities=13%  Similarity=0.233  Sum_probs=147.1

Q ss_pred             ecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCC-CCeEEEEeCCccEEEEeeeCCCCCc------eeeEEEec
Q psy11529         27 TPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPN-TNRIVTCSADRNAYVWTQNNDDKKW------KPTLVLLR   99 (244)
Q Consensus        27 ~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~------~~~~~~~~   99 (244)
                      |+.++.|++|+...  .  ..+..+.+|.+.|.+++|+|+ +.+|++|+.|++|++||  +.++..      .+...+.+
T Consensus        50 GG~~gvI~L~~~~r--~--~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWD--i~t~~~~~~~i~~p~~~L~g  123 (568)
T PTZ00420         50 GGLIGAIRLENQMR--K--PPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWE--IPHNDESVKEIKDPQCILKG  123 (568)
T ss_pred             CCceeEEEeeecCC--C--ceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEE--CCCCCccccccccceEEeec
Confidence            45678899998765  3  567788999999999999996 78999999999999999  544321      12234567


Q ss_pred             cCcceEEEEECCCCCe-EEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEeeCCCeEEEEEeee
Q psy11529        100 INRAATCVKWSPLENK-FAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYI  178 (244)
Q Consensus       100 ~~~~v~~~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~i~i~d~~~  178 (244)
                      |...|.+++|+|++.. |++++.|++|++||+++++.   . ... .+...|.+++|+|+|++|++++.|+.|+|||+  
T Consensus       124 H~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~---~-~~i-~~~~~V~SlswspdG~lLat~s~D~~IrIwD~--  196 (568)
T PTZ00420        124 HKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKR---A-FQI-NMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDP--  196 (568)
T ss_pred             CCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcE---E-EEE-ecCCcEEEEEECCCCCEEEEEecCCEEEEEEC--
Confidence            8899999999999876 57889999999999998864   1 112 24568999999999999999999999999999  


Q ss_pred             cccccCCCCCCCCccccccceeEEecCCCCCCCCeEE-----EEEecCCCEEEEeeCCC----cEEEEeCCCC
Q psy11529        179 KDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHS-----VAFSKDGNKLCWTSHDG----SINVRMSQQV  242 (244)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-----~~~s~~~~~l~~~~~dg----~i~vwd~~~~  242 (244)
                                      +.++.+.++.+|   .+.+..     ..|++++.+|++++.|+    .|+|||+++.
T Consensus       197 ----------------Rsg~~i~tl~gH---~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~  250 (568)
T PTZ00420        197 ----------------RKQEIASSFHIH---DGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNT  250 (568)
T ss_pred             ----------------CCCcEEEEEecc---cCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCC
Confidence                            567778888888   554433     34568999999988764    7999999853

>KOG0264|consensus

Probab=99.97  E-value=4.9e-30  Score=186.65  Aligned_cols=225  Identities=15%  Similarity=0.296  Sum_probs=178.2

Q ss_pred             EeCCCceEEEEEcCCCC-eEEEecCCCeEEEeeeccCCC---cceeeeeeccCCCceEEEEeCC-CCCeEEEEeCCccEE
Q psy11529          6 SFGINPVTTHAWNNTRQ-QLAFTPNNQEVHLYQYEKAAN---DWSQLDVLDGHDLKVTGIDWAP-NTNRIVTCSADRNAY   80 (244)
Q Consensus         6 ~~~~~~v~~~~~~~~~~-~l~~~~~d~~v~v~~~~~~~~---~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~   80 (244)
                      ..|++.-++++|++... .|++++.|++|.+||+.....   ...+...+.+|+..|..++|++ +...|++++.|+.+.
T Consensus       174 ~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~  253 (422)
T KOG0264|consen  174 KGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLM  253 (422)
T ss_pred             EeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEE
Confidence            34555567899998544 788999999999999965221   2345677899999999999999 667889999999999


Q ss_pred             EEeeeCCCCCceeeEEEeccCcceEEEEECCC-CCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCC
Q psy11529         81 VWTQNNDDKKWKPTLVLLRINRAATCVKWSPL-ENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNN  159 (244)
Q Consensus        81 iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~  159 (244)
                      |||  .+++...+......|.+.++|++|+|- +..||+|+.|++|++||+++-..   ....+..|+..|.++.|+|..
T Consensus       254 iwD--~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~---~lh~~e~H~dev~~V~WSPh~  328 (422)
T KOG0264|consen  254 IWD--TRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNK---PLHTFEGHEDEVFQVEWSPHN  328 (422)
T ss_pred             EEE--cCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhccc---CceeccCCCcceEEEEeCCCC
Confidence            999  554344455666789999999999995 66799999999999999999876   677888999999999999965


Q ss_pred             -CEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCC-EEEEeeCCCcEEEE
Q psy11529        160 -HLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGN-KLCWTSHDGSINVR  237 (244)
Q Consensus       160 -~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~vw  237 (244)
                       ..||+++.|+++.+||+.....+....    .......+++..-.+|   ...|..+.|+|+.. .|++.++|+.+.||
T Consensus       329 etvLASSg~D~rl~vWDls~ig~eq~~e----da~dgppEllF~HgGH---~~kV~DfsWnp~ePW~I~SvaeDN~LqIW  401 (422)
T KOG0264|consen  329 ETVLASSGTDRRLNVWDLSRIGEEQSPE----DAEDGPPELLFIHGGH---TAKVSDFSWNPNEPWTIASVAEDNILQIW  401 (422)
T ss_pred             CceeEecccCCcEEEEeccccccccChh----hhccCCcceeEEecCc---ccccccccCCCCCCeEEEEecCCceEEEe
Confidence             589999999999999995433322211    1111234667777788   89999999999877 56778899999999


Q ss_pred             eCCCC
Q psy11529        238 MSQQV  242 (244)
Q Consensus       238 d~~~~  242 (244)
                      .+...
T Consensus       402 ~~s~~  406 (422)
T KOG0264|consen  402 QMAEN  406 (422)
T ss_pred             ecccc
Confidence            98754

>KOG0282|consensus

Probab=99.97  E-value=4.7e-31  Score=193.40  Aligned_cols=204  Identities=16%  Similarity=0.150  Sum_probs=171.0

Q ss_pred             EEeCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCC-CeEEEEeCCccEEEEe
Q psy11529          5 YSFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNT-NRIVTCSADRNAYVWT   83 (244)
Q Consensus         5 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd   83 (244)
                      |..|..+|.+++|+++|..|++++.|+.|++||+++  +  ++...+. ....+.++.|+|++ +.+++|+.|+.|+.||
T Consensus       254 f~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtET--G--~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wD  328 (503)
T KOG0282|consen  254 FKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTET--G--QVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWD  328 (503)
T ss_pred             hhcchhhhhhhhccccCCeeeeeecceeeeeecccc--c--eEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEe
Confidence            445789999999999999999999999999999998  6  6777776 46778999999987 7888999999999999


Q ss_pred             eeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceE-------------------------
Q psy11529         84 QNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWV-------------------------  138 (244)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-------------------------  138 (244)
                        .++++.....  ..|-+.+..+.|-+++++++++++|+.++||+++..-.+..                         
T Consensus       329 --iRs~kvvqeY--d~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs  404 (503)
T KOG0282|consen  329 --IRSGKVVQEY--DRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQS  404 (503)
T ss_pred             --ccchHHHHHH--HhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhc
Confidence              7788754443  46788999999999999999999999999999866533100                         


Q ss_pred             -----------------EEeeecCC--CCceeEEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccce
Q psy11529        139 -----------------AKHIKKPI--KSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNC  199 (244)
Q Consensus       139 -----------------~~~~~~~~--~~~v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~  199 (244)
                                       ....+.+|  .+.-..+.|||||.+|++|+.||.+.+||.                  .+.+.
T Consensus       405 ~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdw------------------kt~kl  466 (503)
T KOG0282|consen  405 MDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDW------------------KTTKL  466 (503)
T ss_pred             cCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeec------------------hhhhh
Confidence                             00111122  245667999999999999999999999999                  67888


Q ss_pred             eEEecCCCCCCCCeEEEEEecCCC-EEEEeeCCCcEEEEe
Q psy11529        200 LVELNNSSSGGGWIHSVAFSKDGN-KLCWTSHDGSINVRM  238 (244)
Q Consensus       200 ~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~vwd  238 (244)
                      +..++.|   ..++..+.|+|... .+|+++.||.|++||
T Consensus       467 ~~~lkah---~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  467 VSKLKAH---DQPCIGVDWHPVEPSKVATCGWDGLIKIWD  503 (503)
T ss_pred             hhccccC---CcceEEEEecCCCcceeEecccCceeEecC
Confidence            8999999   99999999999554 799999999999996

>KOG0294|consensus

Probab=99.97  E-value=1.5e-29  Score=176.71  Aligned_cols=219  Identities=17%  Similarity=0.267  Sum_probs=162.0

Q ss_pred             EEeCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCC--eEEEEeCCccEEEE
Q psy11529          5 YSFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTN--RIVTCSADRNAYVW   82 (244)
Q Consensus         5 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~iw   82 (244)
                      |+.|.++|++++.+  +.++|+|+.|.+|+|||+..  .  ..+..+-.|.+.|+++.|.++-.  .|++|+.||.|.+|
T Consensus        39 ~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k--~--~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw  112 (362)
T KOG0294|consen   39 FSAHAGSITALAVS--GPYVASGSSDETIHIYDMRK--R--KQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIW  112 (362)
T ss_pred             ccccccceeEEEec--ceeEeccCCCCcEEEEeccc--h--hhhcceeccccceEEEEecCCcchhheeeecCCCcEEEE
Confidence            34568999999985  78999999999999999987  4  67777888999999999998654  89999999999999


Q ss_pred             eeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEE
Q psy11529         83 TQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLL  162 (244)
Q Consensus        83 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l  162 (244)
                      +  .  +.+.....+..|.++|+.++.+|.+++-++.+.|+.++.||+-.++.-+...     .....+.+.|+|.|.++
T Consensus       113 ~--~--~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~-----L~~~at~v~w~~~Gd~F  183 (362)
T KOG0294|consen  113 R--V--GSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLN-----LKNKATLVSWSPQGDHF  183 (362)
T ss_pred             E--c--CCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeec-----cCCcceeeEEcCCCCEE
Confidence            9  3  4455666778899999999999999999999999999999998876522221     11223336666666655


Q ss_pred             EEeeCCCeEEEEEeeeccccc----CCCC---C-------------CCC--ccccccceeEEecCCCCCCCCeEEEEE--
Q psy11529        163 GCGSTDFKVRVFSAYIKDIES----APQS---T-------------NWG--SKSTLGNCLVELNNSSSGGGWIHSVAF--  218 (244)
Q Consensus       163 ~~~~~dg~i~i~d~~~~~~~~----~~~~---~-------------~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~--  218 (244)
                      +.+..+ .|-+|.+....+..    +...   .             .+.  -+.....+...+.+|   ...|.++.+  
T Consensus       184 ~v~~~~-~i~i~q~d~A~v~~~i~~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH---~~RVK~i~~~~  259 (362)
T KOG0294|consen  184 VVSGRN-KIDIYQLDNASVFREIENPKRILCATFLDGSELLVGGDNEWISLKDTDSDTPLTEFLAH---ENRVKDIASYT  259 (362)
T ss_pred             EEEecc-EEEEEecccHhHhhhhhccccceeeeecCCceEEEecCCceEEEeccCCCccceeeecc---hhheeeeEEEe
Confidence            555433 35555553222110    0000   0             000  011346778888899   899999884  


Q ss_pred             ecCCCEEEEeeCCCcEEEEeCCCC
Q psy11529        219 SKDGNKLCWTSHDGSINVRMSQQV  242 (244)
Q Consensus       219 s~~~~~l~~~~~dg~i~vwd~~~~  242 (244)
                      .|++.+|+++|+||.|+|||++..
T Consensus       260 ~~~~~~lvTaSSDG~I~vWd~~~~  283 (362)
T KOG0294|consen  260 NPEHEYLVTASSDGFIKVWDIDME  283 (362)
T ss_pred             cCCceEEEEeccCceEEEEEcccc
Confidence            357889999999999999999864

>KOG0275|consensus

Probab=99.97  E-value=5.8e-31  Score=185.14  Aligned_cols=224  Identities=14%  Similarity=0.160  Sum_probs=178.9

Q ss_pred             CCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCccee------eeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEE
Q psy11529          9 INPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQ------LDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVW   82 (244)
Q Consensus         9 ~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~------~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw   82 (244)
                      +.-+.|..|+|||++|++|+.||-|.||+..+  ++.+.      ...+.-+..+|.|+.|+.|...+++|+.||.|++|
T Consensus       213 KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~--GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvW  290 (508)
T KOG0275|consen  213 KSHVECARFSPDGQYLVSGSVDGFIEVWNYTT--GKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVW  290 (508)
T ss_pred             ccchhheeeCCCCceEeeccccceeeeehhcc--chhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEE
Confidence            57788999999999999999999999999876  43222      22334478899999999999999999999999999


Q ss_pred             eeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEE
Q psy11529         83 TQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLL  162 (244)
Q Consensus        83 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l  162 (244)
                      .  +++|.+...+. ..|...|+|+.|+.|+..+++++.|.++++.-+.+++.    ...+.+|.+.|+.+.|.+||..+
T Consensus       291 r--i~tG~ClRrFd-rAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~----LKEfrGHsSyvn~a~ft~dG~~i  363 (508)
T KOG0275|consen  291 R--IETGQCLRRFD-RAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKC----LKEFRGHSSYVNEATFTDDGHHI  363 (508)
T ss_pred             E--EecchHHHHhh-hhhccCeeEEEEccCcchhhcccccceEEEeccccchh----HHHhcCccccccceEEcCCCCeE
Confidence            9  78998776664 47899999999999999999999999999999999875    66778999999999999999999


Q ss_pred             EEeeCCCeEEEEEeeecccccCCCC-----------------CCCC-c--------cccccceeEEecCCCCCCCCeEEE
Q psy11529        163 GCGSTDFKVRVFSAYIKDIESAPQS-----------------TNWG-S--------KSTLGNCLVELNNSSSGGGWIHSV  216 (244)
Q Consensus       163 ~~~~~dg~i~i~d~~~~~~~~~~~~-----------------~~~~-~--------~~~~~~~~~~~~~~~~~~~~v~~~  216 (244)
                      ++++.||+|++|+..+.+....-.+                 .... .        -...++.+.++.......+...+.
T Consensus       364 isaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsSGkREgGdFi~~  443 (508)
T KOG0275|consen  364 ISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSGKREGGDFINA  443 (508)
T ss_pred             EEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEeeeccCCccCCceEEE
Confidence            9999999999999876544321110                 0000 0        112234444444322225567788


Q ss_pred             EEecCCCEEEEeeCCCcEEEEeCCC
Q psy11529        217 AFSKDGNKLCWTSHDGSINVRMSQQ  241 (244)
Q Consensus       217 ~~s~~~~~l~~~~~dg~i~vwd~~~  241 (244)
                      ..||.|.++++.++|+.++.+.+..
T Consensus       444 ~lSpkGewiYcigED~vlYCF~~~s  468 (508)
T KOG0275|consen  444 ILSPKGEWIYCIGEDGVLYCFSVLS  468 (508)
T ss_pred             EecCCCcEEEEEccCcEEEEEEeec
Confidence            8999999999999999999988653

>KOG0973|consensus

Probab=99.97  E-value=1.3e-29  Score=201.69  Aligned_cols=214  Identities=21%  Similarity=0.340  Sum_probs=173.9

Q ss_pred             eEEeCCCceEEEEEcCCCCeEEEecCCCeEEEeeecc--------------CCCcceeeeeeccCCCceEEEEeCCCCCe
Q psy11529          4 VYSFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEK--------------AANDWSQLDVLDGHDLKVTGIDWAPNTNR   69 (244)
Q Consensus         4 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~--------------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~   69 (244)
                      .+.-|.+.|+|+.|+|||++||+|+.|+.|.||....              ....|+....+.+|...|..++|+|++.+
T Consensus        64 ~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~  143 (942)
T KOG0973|consen   64 TMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSL  143 (942)
T ss_pred             eeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccE
Confidence            3445789999999999999999999999999999872              01356788889999999999999999999


Q ss_pred             EEEEeCCccEEEEeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCC--------------
Q psy11529         70 IVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESEND--------------  135 (244)
Q Consensus        70 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~--------------  135 (244)
                      |++++.|++|.+|+  ..+.+  ....+.+|.+.|-.+.|.|-|++||+-++|++|+||++..-..              
T Consensus       144 lvS~s~DnsViiwn--~~tF~--~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~  219 (942)
T KOG0973|consen  144 LVSVSLDNSVIIWN--AKTFE--LLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLT  219 (942)
T ss_pred             EEEecccceEEEEc--cccce--eeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCc
Confidence            99999999999999  66664  4556678999999999999999999999999999999543111              


Q ss_pred             ----------------------------------ceEEEeeecCCCCceeEEEecCC-----CC------------EEEE
Q psy11529        136 ----------------------------------WWVAKHIKKPIKSTITCLDWHPN-----NH------------LLGC  164 (244)
Q Consensus       136 ----------------------------------~~~~~~~~~~~~~~v~~~~~~p~-----~~------------~l~~  164 (244)
                                                        .|.....+.+|.+++.++.|+|.     .+            .+|+
T Consensus       220 T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~Av  299 (942)
T KOG0973|consen  220 TFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAV  299 (942)
T ss_pred             ceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEE
Confidence                                              12233444567889999999982     11            5788


Q ss_pred             eeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCC
Q psy11529        165 GSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQ  241 (244)
Q Consensus       165 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~  241 (244)
                      |+.|++|.||..                  ...+++.....-.  ...|..++|+|||..|+.+|.||+|.+..++.
T Consensus       300 gSqDrSlSVW~T------------------~~~RPl~vi~~lf--~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee  356 (942)
T KOG0973|consen  300 GSQDRSLSVWNT------------------ALPRPLFVIHNLF--NKSIVDMSWSPDGFSLFACSLDGTVALIHFEE  356 (942)
T ss_pred             ecCCccEEEEec------------------CCCCchhhhhhhh--cCceeeeeEcCCCCeEEEEecCCeEEEEEcch
Confidence            999999999987                  3444443332211  67899999999999999999999999998764

>KOG0313|consensus

Probab=99.97  E-value=8.8e-30  Score=181.76  Aligned_cols=214  Identities=19%  Similarity=0.314  Sum_probs=173.0

Q ss_pred             EEeCCCceEEEEEcCCCC---eEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEE
Q psy11529          5 YSFGINPVTTHAWNNTRQ---QLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYV   81 (244)
Q Consensus         5 ~~~~~~~v~~~~~~~~~~---~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i   81 (244)
                      ..-|.++|.+++|.-...   .|++++.|.++++|..+.+....+.+..-.||+..|.+++..++|..+++|+.|..+.+
T Consensus       140 ~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lki  219 (423)
T KOG0313|consen  140 IVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKI  219 (423)
T ss_pred             EecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeee
Confidence            345689999888865433   59999999999999997743333444555699999999999999999999999999999


Q ss_pred             Eeee---------------------CCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEE
Q psy11529         82 WTQN---------------------NDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAK  140 (244)
Q Consensus        82 wd~~---------------------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~  140 (244)
                      |+..                     -+.+...+...+.+|...|.++.|++ ...+++++.|.+|+.||+.+++.   ..
T Consensus       220 Ws~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~---~~  295 (423)
T KOG0313|consen  220 WSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGL---KS  295 (423)
T ss_pred             cccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccc---ee
Confidence            9921                     00122334566788999999999998 67899999999999999999986   22


Q ss_pred             eeecCCCCceeEEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEec
Q psy11529        141 HIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSK  220 (244)
Q Consensus       141 ~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  220 (244)
                      ..  .....+++++++|..++|++|+.|..|++||.|+++               ..-...++.+|   .+.|.++.|+|
T Consensus       296 ~~--~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~---------------gs~v~~s~~gH---~nwVssvkwsp  355 (423)
T KOG0313|consen  296 TL--TTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGD---------------GSVVSQSLIGH---KNWVSSVKWSP  355 (423)
T ss_pred             ee--ecCcceeEeecccccceeeecCCCCceeecCCCCCC---------------CceeEEeeecc---hhhhhheecCC
Confidence            22  224688999999999999999999999999997542               23355778899   89999999999


Q ss_pred             CCC-EEEEeeCCCcEEEEeCCCC
Q psy11529        221 DGN-KLCWTSHDGSINVRMSQQV  242 (244)
Q Consensus       221 ~~~-~l~~~~~dg~i~vwd~~~~  242 (244)
                      ... .|++++.|+++++||++.-
T Consensus       356 ~~~~~~~S~S~D~t~klWDvRS~  378 (423)
T KOG0313|consen  356 TNEFQLVSGSYDNTVKLWDVRST  378 (423)
T ss_pred             CCceEEEEEecCCeEEEEEeccC
Confidence            555 7889999999999999864

>KOG0265|consensus

Probab=99.97  E-value=1.5e-29  Score=175.48  Aligned_cols=219  Identities=18%  Similarity=0.136  Sum_probs=179.0

Q ss_pred             EEeCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCC-eEEEEeCCccEEEEe
Q psy11529          5 YSFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTN-RIVTCSADRNAYVWT   83 (244)
Q Consensus         5 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd   83 (244)
                      .+.|.+.|..+.|.+|++.+++++.|++|+.||.++  +  +....+++|..-|+++.-+.-|. .+.+++.|+++++||
T Consensus        86 lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~t--G--~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D  161 (338)
T KOG0265|consen   86 LKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAET--G--KRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWD  161 (338)
T ss_pred             eccccceeEeeeeccCCCEEEEecCCceEEEEeccc--c--eeeehhccccceeeecCccccCCeEEEecCCCceEEEEe
Confidence            346789999999999999999999999999999988  6  88999999999999998544444 566889999999999


Q ss_pred             eeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEE
Q psy11529         84 QNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLG  163 (244)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~  163 (244)
                        .+++.....   ...+.+++++.|..++..+.+|+-|+.|++||++.+..    .....+|...|+.+..+|+|.++.
T Consensus       162 --~R~k~~~~t---~~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~----~~~lsGh~DtIt~lsls~~gs~ll  232 (338)
T KOG0265|consen  162 --IRKKEAIKT---FENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDG----LYTLSGHADTITGLSLSRYGSFLL  232 (338)
T ss_pred             --ecccchhhc---cccceeEEEEEecccccceeeccccCceeeeccccCcc----eEEeecccCceeeEEeccCCCccc
Confidence              565553322   34567899999999999999999999999999998875    677789999999999999999999


Q ss_pred             EeeCCCeEEEEEeeecccccC----------------------CCCC--CCCc--------cccccceeEEecCCCCCCC
Q psy11529        164 CGSTDFKVRVFSAYIKDIESA----------------------PQST--NWGS--------KSTLGNCLVELNNSSSGGG  211 (244)
Q Consensus       164 ~~~~dg~i~i~d~~~~~~~~~----------------------~~~~--~~~~--------~~~~~~~~~~~~~~~~~~~  211 (244)
                      +-++|.++++||++.......                      +...  ..+.        .......+..+.+|   .+
T Consensus       233 snsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh---~g  309 (338)
T KOG0265|consen  233 SNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGH---YG  309 (338)
T ss_pred             cccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCc---ce
Confidence            999999999999973321111                      0000  0000        22334677888999   99


Q ss_pred             CeEEEEEecCCCEEEEeeCCCcEEEEeC
Q psy11529        212 WIHSVAFSKDGNKLCWTSHDGSINVRMS  239 (244)
Q Consensus       212 ~v~~~~~s~~~~~l~~~~~dg~i~vwd~  239 (244)
                      .|.+++|+|...+|.+++.|.+|++=++
T Consensus       310 svn~~~Fhp~e~iils~~sdk~i~lgei  337 (338)
T KOG0265|consen  310 SVNEVDFHPTEPIILSCSSDKTIYLGEI  337 (338)
T ss_pred             eEEEeeecCCCcEEEEeccCceeEeecc
Confidence            9999999999999999999999987443

>KOG0306|consensus

Probab=99.97  E-value=8.6e-30  Score=195.96  Aligned_cols=208  Identities=14%  Similarity=0.175  Sum_probs=181.5

Q ss_pred             eeEEeCCCceEEEEEcCCCCeEEEecCCCeEEEeeecc----CCCcceee------eeeccCCCceEEEEeCCCCCeEEE
Q psy11529          3 EVYSFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEK----AANDWSQL------DVLDGHDLKVTGIDWAPNTNRIVT   72 (244)
Q Consensus         3 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~----~~~~~~~~------~~~~~~~~~v~~~~~~~~~~~l~~   72 (244)
                      |....|.+.|.+++.+||++.+++|+.|.+|++|+..-    ++.+ +..      .+++ -+..|.|+++||||++|+.
T Consensus       448 Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~-~k~lsl~~~rtLe-l~ddvL~v~~Spdgk~LaV  525 (888)
T KOG0306|consen  448 ETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQ-KKVLSLKHTRTLE-LEDDVLCVSVSPDGKLLAV  525 (888)
T ss_pred             hhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCccc-ceeeeeccceEEe-ccccEEEEEEcCCCcEEEE
Confidence            44557899999999999999999999999999999632    1110 111      2222 4678999999999999999


Q ss_pred             EeCCccEEEEeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeE
Q psy11529         73 CSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITC  152 (244)
Q Consensus        73 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~  152 (244)
                      +--|+++++|-  +.+-+  ....+.+|.-+|.|+..+||++.+++|+.|..|+||-++=+..    ...+.+|...|.+
T Consensus       526 sLLdnTVkVyf--lDtlK--FflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDC----HKS~fAHdDSvm~  597 (888)
T KOG0306|consen  526 SLLDNTVKVYF--LDTLK--FFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDC----HKSFFAHDDSVMS  597 (888)
T ss_pred             EeccCeEEEEE--eccee--eeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchh----hhhhhcccCceeE
Confidence            99999999999  56644  4567789999999999999999999999999999999988864    7788899999999


Q ss_pred             EEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCC
Q psy11529        153 LDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDG  232 (244)
Q Consensus       153 ~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg  232 (244)
                      +.|.|+..++.+++.|+.|+-||-                  ...+.+..+.+|   ...|++++.+|+|.+++++|.|.
T Consensus       598 V~F~P~~~~FFt~gKD~kvKqWDg------------------~kFe~iq~L~~H---~~ev~cLav~~~G~~vvs~shD~  656 (888)
T KOG0306|consen  598 VQFLPKTHLFFTCGKDGKVKQWDG------------------EKFEEIQKLDGH---HSEVWCLAVSPNGSFVVSSSHDK  656 (888)
T ss_pred             EEEcccceeEEEecCcceEEeech------------------hhhhhheeeccc---hheeeeeEEcCCCCeEEeccCCc
Confidence            999999999999999999999998                  667889999999   89999999999999999999999


Q ss_pred             cEEEEeCCC
Q psy11529        233 SINVRMSQQ  241 (244)
Q Consensus       233 ~i~vwd~~~  241 (244)
                      +|++|....
T Consensus       657 sIRlwE~td  665 (888)
T KOG0306|consen  657 SIRLWERTD  665 (888)
T ss_pred             eeEeeeccC
Confidence            999998654

>KOG0289|consensus

Probab=99.97  E-value=2.1e-29  Score=182.81  Aligned_cols=206  Identities=11%  Similarity=0.126  Sum_probs=175.0

Q ss_pred             eeEEeCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEE
Q psy11529          3 EVYSFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVW   82 (244)
Q Consensus         3 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw   82 (244)
                      .++.-|...|+.+.++|+...+++++.|..|+||....  .  ........|+++|+.+..+|.|.||++++.|++..+.
T Consensus       255 ~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~--~--s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fs  330 (506)
T KOG0289|consen  255 ATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPL--S--SEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFS  330 (506)
T ss_pred             hhccCcceEEEEEEeccchhheeecCCcceEEeecccc--c--cCccccccccccceeeeeccCCcEEEEecCCceEEEE
Confidence            45566788999999999999999999999999999876  3  4566777899999999999999999999999999999


Q ss_pred             eeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEE
Q psy11529         83 TQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLL  162 (244)
Q Consensus        83 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l  162 (244)
                      |  .+++.......-....-.+++.+|+|||..|.+|..|+.++|||+.++..    ...+.+|.++|..++|+.+|-+|
T Consensus       331 d--~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~----~a~Fpght~~vk~i~FsENGY~L  404 (506)
T KOG0289|consen  331 D--ISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTN----VAKFPGHTGPVKAISFSENGYWL  404 (506)
T ss_pred             E--ccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccc----cccCCCCCCceeEEEeccCceEE
Confidence            9  78887554444333345689999999999999999999999999999875    56677899999999999999999


Q ss_pred             EEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEe
Q psy11529        163 GCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRM  238 (244)
Q Consensus       163 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd  238 (244)
                      +++++|+.|++||+|                  ..+...++....  ...+.++.|.+.|.+|+.++.|=.|++++
T Consensus       405 at~add~~V~lwDLR------------------Kl~n~kt~~l~~--~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~  460 (506)
T KOG0289|consen  405 ATAADDGSVKLWDLR------------------KLKNFKTIQLDE--KKEVNSLSFDQSGTYLGIAGSDLQVYICK  460 (506)
T ss_pred             EEEecCCeEEEEEeh------------------hhcccceeeccc--cccceeEEEcCCCCeEEeecceeEEEEEe
Confidence            999999999999995                  344555555432  45799999999999999998877777665

>KOG0643|consensus

Probab=99.97  E-value=1.7e-29  Score=172.82  Aligned_cols=225  Identities=18%  Similarity=0.231  Sum_probs=178.3

Q ss_pred             EEeCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeC-----CccE
Q psy11529          5 YSFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSA-----DRNA   79 (244)
Q Consensus         5 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----d~~i   79 (244)
                      +.-|.+.|.|++.+.+.+++++|+.|.++++||++.  +  +++..++ ...+|..+.|+++|++++.+.+     .+.|
T Consensus        48 y~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~t--G--k~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v  122 (327)
T KOG0643|consen   48 YDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVET--G--KQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFV  122 (327)
T ss_pred             ecCCCceEEEEEecCCcceeeeccccceeEEEEcCC--C--cEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEE
Confidence            456799999999999999999999999999999988  6  7787887 6789999999999998877654     4789


Q ss_pred             EEEeeeCCCC---CceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEec
Q psy11529         80 YVWTQNNDDK---KWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWH  156 (244)
Q Consensus        80 ~iwd~~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~  156 (244)
                      .++|++....   ...+.+.+..+.+.++.+-|.|-++.|++|..||.|.+||.+++..   .......|...|+.+.++
T Consensus       123 ~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~---~v~s~~~h~~~Ind~q~s  199 (327)
T KOG0643|consen  123 SVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKE---LVDSDEEHSSKINDLQFS  199 (327)
T ss_pred             EEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCce---eeechhhhcccccccccc
Confidence            9999531110   1234556667789999999999999999999999999999999865   455667788899999999


Q ss_pred             CCCCEEEEeeCCCeEEEEEeeeccccc------CCCCC---C-------C-Cc--------ccc------------ccce
Q psy11529        157 PNNHLLGCGSTDFKVRVFSAYIKDIES------APQST---N-------W-GS--------KST------------LGNC  199 (244)
Q Consensus       157 p~~~~l~~~~~dg~i~i~d~~~~~~~~------~~~~~---~-------~-~~--------~~~------------~~~~  199 (244)
                      ||..++++++.|.+-++||.++-+...      +....   +       . +.        ..+            ..+.
T Consensus       200 ~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEE  279 (327)
T KOG0643|consen  200 RDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEE  279 (327)
T ss_pred             CCcceEEecccCccceeeeccceeeEEEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHH
Confidence            999999999999999999986433221      00000   0       0 00        011            1233


Q ss_pred             eEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCC
Q psy11529        200 LVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQ  240 (244)
Q Consensus       200 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~  240 (244)
                      +..+++|   -++|++++|+|+|+..++|++||.|++.-.+
T Consensus       280 igrvkGH---FGPINsvAfhPdGksYsSGGEDG~VR~h~Fd  317 (327)
T KOG0643|consen  280 IGRVKGH---FGPINSVAFHPDGKSYSSGGEDGYVRLHHFD  317 (327)
T ss_pred             hcccccc---ccCcceeEECCCCcccccCCCCceEEEEEec
Confidence            4567788   9999999999999999999999999997554

>KOG2445|consensus

Probab=99.97  E-value=2e-28  Score=170.67  Aligned_cols=235  Identities=22%  Similarity=0.338  Sum_probs=179.2

Q ss_pred             CceeEEeCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCC--CCCeEEEEeCCcc
Q psy11529          1 MAEVYSFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAP--NTNRIVTCSADRN   78 (244)
Q Consensus         1 m~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~   78 (244)
                      |..+.+-|.+-|.++.|.+.|+++|+|+.|++|+|||.+.+.+++.+....+.|.+.|..+.|.+  -|+.+|+++.|++
T Consensus         5 ~~pi~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drt   84 (361)
T KOG2445|consen    5 MAPIDSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRT   84 (361)
T ss_pred             ccccccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCc
Confidence            34566677899999999999999999999999999998776688999999999999999999976  5899999999999


Q ss_pred             EEEEeee-----CCCCCceeeEEEeccCcceEEEEECCC--CCeEEEeeCCCeEEEEEeecCCC----------------
Q psy11529         79 AYVWTQN-----NDDKKWKPTLVLLRINRAATCVKWSPL--ENKFAAGSGARLISVCYFESEND----------------  135 (244)
Q Consensus        79 i~iwd~~-----~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~----------------  135 (244)
                      +.||.-.     ....++.....+....+.|+.+.|.|.  |-.||+++.||.++||+......                
T Consensus        85 v~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~p  164 (361)
T KOG2445|consen   85 VSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDP  164 (361)
T ss_pred             eeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCC
Confidence            9999820     011244555666677889999999996  77899999999999998422110                


Q ss_pred             -----------------------------------------------ceEEEeeecCCCCceeEEEecCCC----CEEEE
Q psy11529        136 -----------------------------------------------WWVAKHIKKPIKSTITCLDWHPNN----HLLGC  164 (244)
Q Consensus       136 -----------------------------------------------~~~~~~~~~~~~~~v~~~~~~p~~----~~l~~  164 (244)
                                                                     .+........+..+|++++|.|+-    .+||+
T Consensus       165 p~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAv  244 (361)
T KOG2445|consen  165 PGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAV  244 (361)
T ss_pred             cccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEE
Confidence                                                           111112223456799999999953    48999


Q ss_pred             eeCCCeEEEEEeeecc--cccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeC
Q psy11529        165 GSTDFKVRVFSAYIKD--IESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMS  239 (244)
Q Consensus       165 ~~~dg~i~i~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~  239 (244)
                      ++.|| |+||.+....  +.............-.-+.+..+..|   .+.|..+.|+-.|..|++.|.||.|++|..
T Consensus       245 A~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H---~~~VWrv~wNmtGtiLsStGdDG~VRLWka  317 (361)
T KOG2445|consen  245 ATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDH---NGEVWRVRWNMTGTILSSTGDDGCVRLWKA  317 (361)
T ss_pred             eecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCC---CCceEEEEEeeeeeEEeecCCCceeeehhh
Confidence            99999 9999996321  11111111111111234566778888   999999999999999999999999999964

>KOG0285|consensus

Probab=99.97  E-value=9.3e-30  Score=180.72  Aligned_cols=199  Identities=20%  Similarity=0.268  Sum_probs=179.6

Q ss_pred             CCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCC
Q psy11529          8 GINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNND   87 (244)
Q Consensus         8 ~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~   87 (244)
                      |-..|..+++|+--.++++++.|++|+.||++.  +  +.++.+.+|-..|.+++.+|.-..|++|+.|.++++||  ++
T Consensus       192 hi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~--n--kvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWD--iR  265 (460)
T KOG0285|consen  192 HIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEY--N--KVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWD--IR  265 (460)
T ss_pred             hhheeeeeeecccCceEEEecCCCeeEEEechh--h--hhHHHhccccceeEEEeccccceeEEecCCcceEEEee--ec
Confidence            567899999999999999999999999999987  5  78899999999999999999999999999999999999  55


Q ss_pred             CCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEeeC
Q psy11529         88 DKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGST  167 (244)
Q Consensus        88 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~  167 (244)
                      +..  ....+.+|...|..+.+.|....+++|+.|++|++||++.++.    ......|+..+.+++.+|....+|+++.
T Consensus       266 tr~--~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt----~~tlt~hkksvral~lhP~e~~fASas~  339 (460)
T KOG0285|consen  266 TRA--SVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKT----MITLTHHKKSVRALCLHPKENLFASASP  339 (460)
T ss_pred             ccc--eEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCce----eEeeecccceeeEEecCCchhhhhccCC
Confidence            654  3566789999999999999888999999999999999999975    5666778899999999999999999887


Q ss_pred             CCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCC
Q psy11529        168 DFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQ  241 (244)
Q Consensus       168 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~  241 (244)
                      |. |+-|++                  ..+..+..+.+|   ...|.+++...|| ++++|++.|.+.+||.++
T Consensus       340 dn-ik~w~~------------------p~g~f~~nlsgh---~~iintl~~nsD~-v~~~G~dng~~~fwdwks  390 (460)
T KOG0285|consen  340 DN-IKQWKL------------------PEGEFLQNLSGH---NAIINTLSVNSDG-VLVSGGDNGSIMFWDWKS  390 (460)
T ss_pred             cc-ceeccC------------------Cccchhhccccc---cceeeeeeeccCc-eEEEcCCceEEEEEecCc
Confidence            75 899999                  788889989998   8999999998777 788899999999999875

>KOG1332|consensus

Probab=99.97  E-value=1.2e-29  Score=171.43  Aligned_cols=211  Identities=20%  Similarity=0.361  Sum_probs=174.3

Q ss_pred             EeCCCceEEEEEcC--CCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCC--CCeEEEEeCCccEEE
Q psy11529          6 SFGINPVTTHAWNN--TRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPN--TNRIVTCSADRNAYV   81 (244)
Q Consensus         6 ~~~~~~v~~~~~~~--~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~i   81 (244)
                      .-|.+||..++|..  -|..||+++.||.|.||.-++  +++........|...|++++|.|.  |-.|+.++.||.|.|
T Consensus        53 ~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~--g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsv  130 (299)
T KOG1332|consen   53 TGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEEN--GRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSV  130 (299)
T ss_pred             cCCCCCeeEEeecccccCcEeeEeecCceEEEEecCC--CchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEE
Confidence            45789999999976  799999999999999999998  788889999999999999999994  567889999999999


Q ss_pred             EeeeCCCCCceeeEEEeccCcceEEEEECCC---C-----------CeEEEeeCCCeEEEEEeecCCCceEEEeeecCCC
Q psy11529         82 WTQNNDDKKWKPTLVLLRINRAATCVKWSPL---E-----------NKFAAGSGARLISVCYFESENDWWVAKHIKKPIK  147 (244)
Q Consensus        82 wd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~-----------~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~  147 (244)
                      .+++.. +..........|.-.|++++|.|.   |           +.|++|+.|..|+||+.+.++  +.....+..|.
T Consensus       131 l~~~~~-g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~--w~~e~~l~~H~  207 (299)
T KOG1332|consen  131 LTYDSS-GGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDS--WKLERTLEGHK  207 (299)
T ss_pred             EEEcCC-CCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcc--hhhhhhhhhcc
Confidence            996333 344444445678999999999986   4           569999999999999999873  45566688999


Q ss_pred             CceeEEEecCCC----CEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCC
Q psy11529        148 STITCLDWHPNN----HLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGN  223 (244)
Q Consensus       148 ~~v~~~~~~p~~----~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  223 (244)
                      +.|+.++|.|.-    .+||++++||++.||..+ .+.+.           -..+++..+      ...+..+.||+.|.
T Consensus       208 dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~-~e~e~-----------wk~tll~~f------~~~~w~vSWS~sGn  269 (299)
T KOG1332|consen  208 DWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKD-EEYEP-----------WKKTLLEEF------PDVVWRVSWSLSGN  269 (299)
T ss_pred             hhhhhhhhccccCCCceeeEEecCCCcEEEEEec-CccCc-----------ccccccccC------CcceEEEEEecccc
Confidence            999999999954    489999999999999875 22110           123334433      56799999999999


Q ss_pred             EEEEeeCCCcEEEEeC
Q psy11529        224 KLCWTSHDGSINVRMS  239 (244)
Q Consensus       224 ~l~~~~~dg~i~vwd~  239 (244)
                      +|+.++.|+.|.+|.-
T Consensus       270 ~LaVs~GdNkvtlwke  285 (299)
T KOG1332|consen  270 ILAVSGGDNKVTLWKE  285 (299)
T ss_pred             EEEEecCCcEEEEEEe
Confidence            9999999999999963

>KOG0281|consensus

Probab=99.97  E-value=1e-30  Score=185.20  Aligned_cols=193  Identities=17%  Similarity=0.241  Sum_probs=168.7

Q ss_pred             CCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCCC
Q psy11529          9 INPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDD   88 (244)
Q Consensus         9 ~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~   88 (244)
                      ...|+|+.+.  ...+++|..|++|+|||.+.  .  .+...+.+|++.|.|+.|.  .+.+++|+.|.+|++||  .++
T Consensus       197 skgVYClQYD--D~kiVSGlrDnTikiWD~n~--~--~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWD--v~t  266 (499)
T KOG0281|consen  197 SKGVYCLQYD--DEKIVSGLRDNTIKIWDKNS--L--ECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWD--VNT  266 (499)
T ss_pred             CCceEEEEec--chhhhcccccCceEEecccc--H--HHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEe--ccC
Confidence            5789999874  55799999999999999977  3  7889999999999999997  56999999999999999  889


Q ss_pred             CCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEeeCC
Q psy11529         89 KKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTD  168 (244)
Q Consensus        89 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d  168 (244)
                      ++....+  ..|...|..+.|+.  .++++++.|.++.+||+..... ..+.....+|...|+.+.|+  .+++++++.|
T Consensus       267 ge~l~tl--ihHceaVLhlrf~n--g~mvtcSkDrsiaVWdm~sps~-it~rrVLvGHrAaVNvVdfd--~kyIVsASgD  339 (499)
T KOG0281|consen  267 GEPLNTL--IHHCEAVLHLRFSN--GYMVTCSKDRSIAVWDMASPTD-ITLRRVLVGHRAAVNVVDFD--DKYIVSASGD  339 (499)
T ss_pred             CchhhHH--hhhcceeEEEEEeC--CEEEEecCCceeEEEeccCchH-HHHHHHHhhhhhheeeeccc--cceEEEecCC
Confidence            8865444  57889999999975  5999999999999999988763 23445667899999999997  4599999999


Q ss_pred             CeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCC
Q psy11529        169 FKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQ  241 (244)
Q Consensus       169 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~  241 (244)
                      .+|++|++                  .+++++.++.+|   ...|-++++  .|+++++|++|.+|++||++.
T Consensus       340 RTikvW~~------------------st~efvRtl~gH---kRGIAClQY--r~rlvVSGSSDntIRlwdi~~  389 (499)
T KOG0281|consen  340 RTIKVWST------------------STCEFVRTLNGH---KRGIACLQY--RDRLVVSGSSDNTIRLWDIEC  389 (499)
T ss_pred             ceEEEEec------------------cceeeehhhhcc---cccceehhc--cCeEEEecCCCceEEEEeccc
Confidence            99999999                  789999999999   888988887  799999999999999999874

>KOG0646|consensus

Probab=99.97  E-value=1.2e-28  Score=180.04  Aligned_cols=219  Identities=19%  Similarity=0.179  Sum_probs=178.3

Q ss_pred             CCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeee---
Q psy11529          9 INPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQN---   85 (244)
Q Consensus         9 ~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~---   85 (244)
                      +++|.|++-+|+|.+|+.|+..|.|++|.+.+  +  ..+..+.+|-..|+++.|+-||.+|++|+.||.|.+|.+.   
T Consensus        81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelss--G--~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv  156 (476)
T KOG0646|consen   81 PGPVHALASSNLGYFLLAGTISGNLYLWELSS--G--ILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLV  156 (476)
T ss_pred             ccceeeeecCCCceEEEeecccCcEEEEEecc--c--cHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeec
Confidence            78899999999999999998999999999988  6  7888889999999999999999999999999999999852   


Q ss_pred             --CCCCCceeeEEEeccCcceEEEEECCC--CCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCE
Q psy11529         86 --NDDKKWKPTLVLLRINRAATCVKWSPL--ENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHL  161 (244)
Q Consensus        86 --~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~  161 (244)
                        ..+....+...+..|.-.|+.+...+.  ..++++++.|.++++||+..+..   ......  ...+.+++.+|.++.
T Consensus       157 ~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~L---Llti~f--p~si~av~lDpae~~  231 (476)
T KOG0646|consen  157 SADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVL---LLTITF--PSSIKAVALDPAERV  231 (476)
T ss_pred             ccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEecccee---eEEEec--CCcceeEEEcccccE
Confidence              123345566677789999999888765  46799999999999999999864   333333  368999999999999


Q ss_pred             EEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCC--CeEEEEEecCCCEEEEeeCCCcEEEEeC
Q psy11529        162 LGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGG--WIHSVAFSKDGNKLCWTSHDGSINVRMS  239 (244)
Q Consensus       162 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~~~~~dg~i~vwd~  239 (244)
                      +++|+.+|.|.+.++...........  .......+..+..+.+|   .+  .|++++.+-||.+|++|+.||.++|||+
T Consensus       232 ~yiGt~~G~I~~~~~~~~~~~~~~v~--~k~~~~~~t~~~~~~Gh---~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi  306 (476)
T KOG0646|consen  232 VYIGTEEGKIFQNLLFKLSGQSAGVN--QKGRHEENTQINVLVGH---ENESAITCLAISTDGTLLLSGDEDGKVCVWDI  306 (476)
T ss_pred             EEecCCcceEEeeehhcCCccccccc--ccccccccceeeeeccc---cCCcceeEEEEecCccEEEeeCCCCCEEEEec
Confidence            99999999999988853321111000  11111345566777887   55  9999999999999999999999999998


Q ss_pred             CC
Q psy11529        240 QQ  241 (244)
Q Consensus       240 ~~  241 (244)
                      ..
T Consensus       307 ~S  308 (476)
T KOG0646|consen  307 YS  308 (476)
T ss_pred             ch
Confidence            65

>KOG0306|consensus

Probab=99.97  E-value=7e-29  Score=191.03  Aligned_cols=211  Identities=18%  Similarity=0.260  Sum_probs=178.3

Q ss_pred             eeEEeCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEE
Q psy11529          3 EVYSFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVW   82 (244)
Q Consensus         3 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw   82 (244)
                      .+.++..+-+.+..|-|.++++++|...|.+.+||+..  .  ..+.++++|++.|++++.+||++.+++|+.|.+|++|
T Consensus       406 ciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS--~--~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfW  481 (888)
T KOG0306|consen  406 CIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLAS--A--SLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFW  481 (888)
T ss_pred             eeEEeccccEEEEEecCCCceEEEeccCCceEEEEeeh--h--hhhhhhhccccceeeeeecCCCCceEEecCCcEEEEE
Confidence            44455566777888888888888888888888888866  3  5566778999999999999999999999999999999


Q ss_pred             eeeCCC---CCceeeE-----EEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEE
Q psy11529         83 TQNNDD---KKWKPTL-----VLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLD  154 (244)
Q Consensus        83 d~~~~~---~~~~~~~-----~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~  154 (244)
                      |..+..   +.....+     ........|.|+.+||||++|+++--|.+++||-+++-+-    .....+|.-+|.++.
T Consensus       482 df~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKF----flsLYGHkLPV~smD  557 (888)
T KOG0306|consen  482 DFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKF----FLSLYGHKLPVLSMD  557 (888)
T ss_pred             eEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceee----eeeecccccceeEEe
Confidence            953222   2211111     1233467899999999999999999999999999998763    566788999999999


Q ss_pred             ecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcE
Q psy11529        155 WHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSI  234 (244)
Q Consensus       155 ~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i  234 (244)
                      .+||+++++||+.|..|++|-+                  ..|.+-.++.+|   ...|.++.|-|....+.++|.|+.|
T Consensus       558 IS~DSklivTgSADKnVKiWGL------------------dFGDCHKS~fAH---dDSvm~V~F~P~~~~FFt~gKD~kv  616 (888)
T KOG0306|consen  558 ISPDSKLIVTGSADKNVKIWGL------------------DFGDCHKSFFAH---DDSVMSVQFLPKTHLFFTCGKDGKV  616 (888)
T ss_pred             ccCCcCeEEeccCCCceEEecc------------------ccchhhhhhhcc---cCceeEEEEcccceeEEEecCcceE
Confidence            9999999999999999999999                  789999999999   9999999999999999999999999


Q ss_pred             EEEeCCCC
Q psy11529        235 NVRMSQQV  242 (244)
Q Consensus       235 ~vwd~~~~  242 (244)
                      +-||-+++
T Consensus       617 KqWDg~kF  624 (888)
T KOG0306|consen  617 KQWDGEKF  624 (888)
T ss_pred             Eeechhhh
Confidence            99998765

>KOG0973|consensus

Probab=99.97  E-value=1.8e-28  Score=195.30  Aligned_cols=228  Identities=17%  Similarity=0.249  Sum_probs=179.8

Q ss_pred             CCCceEEEEEcCCCCeEEEec--CCCeEEEeeeccCC--------CcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCc
Q psy11529          8 GINPVTTHAWNNTRQQLAFTP--NNQEVHLYQYEKAA--------NDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADR   77 (244)
Q Consensus         8 ~~~~v~~~~~~~~~~~l~~~~--~d~~v~v~~~~~~~--------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~   77 (244)
                      ++..|.+++.+|||..+|+|+  .|+.++||+.+.-.        .-.+.+.+...|.+.|+|+.|+|||++||+|++|+
T Consensus        12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~   91 (942)
T KOG0973|consen   12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDR   91 (942)
T ss_pred             CCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcc
Confidence            367799999999999999999  89999999864310        01244566778999999999999999999999999


Q ss_pred             cEEEEeeeCCC----------------CCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEe
Q psy11529         78 NAYVWTQNNDD----------------KKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKH  141 (244)
Q Consensus        78 ~i~iwd~~~~~----------------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~  141 (244)
                      .|.||..  ..                ..+.....+.+|...|..++|+|++.+|++++.|++|.||+..+.+    ...
T Consensus        92 ~v~iW~~--~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~----~~~  165 (942)
T KOG0973|consen   92 LVMIWER--AEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFE----LLK  165 (942)
T ss_pred             eEEEeee--cccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccce----eee
Confidence            9999994  31                1233455677899999999999999999999999999999999884    467


Q ss_pred             eecCCCCceeEEEecCCCCEEEEeeCCCeEEEEEeeecccccC--------CC-----CCCCCc----------------
Q psy11529        142 IKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESA--------PQ-----STNWGS----------------  192 (244)
Q Consensus       142 ~~~~~~~~v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~--------~~-----~~~~~~----------------  192 (244)
                      ...+|.+.|-.+.|.|-|++||+-++|++|++|++....++..        +.     ...|..                
T Consensus       166 vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~  245 (942)
T KOG0973|consen  166 VLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKS  245 (942)
T ss_pred             eeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcc
Confidence            7889999999999999999999999999999999643222110        00     001111                


Q ss_pred             -----cccccceeEEecCCCCCCCCeEEEEEecC-----CC------------EEEEeeCCCcEEEEeCCCCCC
Q psy11529        193 -----KSTLGNCLVELNNSSSGGGWIHSVAFSKD-----GN------------KLCWTSHDGSINVRMSQQVLP  244 (244)
Q Consensus       193 -----~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-----~~------------~l~~~~~dg~i~vwd~~~~~p  244 (244)
                           ...+.+.-..+.+|   ..++.+++|+|.     .+            .+|+|+.|++|.||......|
T Consensus       246 ~~~IieR~tWk~~~~LvGH---~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RP  316 (942)
T KOG0973|consen  246 TIAIIERGTWKVDKDLVGH---SAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRP  316 (942)
T ss_pred             eeEEEecCCceeeeeeecC---CCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCc
Confidence                 22334455667788   889999999981     11            578899999999999877665

>KOG0302|consensus

Probab=99.97  E-value=7.8e-29  Score=176.94  Aligned_cols=210  Identities=17%  Similarity=0.293  Sum_probs=168.1

Q ss_pred             CCceEEEEEcCCC--CeEEEecCCCeEEEeeeccCC------------CcceeeeeeccCCCceEEEEeCC-CCCeEEEE
Q psy11529          9 INPVTTHAWNNTR--QQLAFTPNNQEVHLYQYEKAA------------NDWSQLDVLDGHDLKVTGIDWAP-NTNRIVTC   73 (244)
Q Consensus         9 ~~~v~~~~~~~~~--~~l~~~~~d~~v~v~~~~~~~------------~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~   73 (244)
                      .+.++.+.-++-+  .+.++=+..|.|+||++...-            ...+++.++.+|...=.+++||| ....|++|
T Consensus       151 ~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsG  230 (440)
T KOG0302|consen  151 YGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSG  230 (440)
T ss_pred             ccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccccC
Confidence            4556666666644  355555788999999975410            23457788899999999999999 33357888


Q ss_pred             eCCccEEEEeeeCCCCCceee-EEEeccCcceEEEEECCC-CCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCcee
Q psy11529         74 SADRNAYVWTQNNDDKKWKPT-LVLLRINRAATCVKWSPL-ENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTIT  151 (244)
Q Consensus        74 ~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~  151 (244)
                      ..-+.|++|.  ..++.+..- ..+.+|...|..++|+|. ...|++|+.|++|+|||++.+..  ......+.|.+.|+
T Consensus       231 Dc~~~I~lw~--~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~--~~~~~~kAh~sDVN  306 (440)
T KOG0302|consen  231 DCVKGIHLWE--PSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPK--KAAVSTKAHNSDVN  306 (440)
T ss_pred             ccccceEeee--eccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCc--cceeEeeccCCcee
Confidence            8889999999  666765432 223468999999999997 56799999999999999999854  22334478889999


Q ss_pred             EEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecC-CCEEEEeeC
Q psy11529        152 CLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKD-GNKLCWTSH  230 (244)
Q Consensus       152 ~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~  230 (244)
                      .++|+.+-.+||+|++||+++|||+|+.               ..++++..++.|   ..+|+++.|+|. ...|++++.
T Consensus       307 VISWnr~~~lLasG~DdGt~~iwDLR~~---------------~~~~pVA~fk~H---k~pItsieW~p~e~s~iaasg~  368 (440)
T KOG0302|consen  307 VISWNRREPLLASGGDDGTLSIWDLRQF---------------KSGQPVATFKYH---KAPITSIEWHPHEDSVIAASGE  368 (440)
T ss_pred             eEEccCCcceeeecCCCceEEEEEhhhc---------------cCCCcceeEEec---cCCeeEEEeccccCceEEeccC
Confidence            9999998889999999999999999754               356889999999   999999999994 457888899


Q ss_pred             CCcEEEEeCC
Q psy11529        231 DGSINVRMSQ  240 (244)
Q Consensus       231 dg~i~vwd~~  240 (244)
                      |..|.+||+.
T Consensus       369 D~QitiWDls  378 (440)
T KOG0302|consen  369 DNQITIWDLS  378 (440)
T ss_pred             CCcEEEEEee
Confidence            9999999985

>KOG0641|consensus

Probab=99.97  E-value=1.6e-27  Score=160.04  Aligned_cols=212  Identities=17%  Similarity=0.141  Sum_probs=161.3

Q ss_pred             CCceEEEEEcCCCCeEEEecCCCeEEEeeeccCC----------Cc-ceeeeeeccCCCceEEEEeCCCCCeEEEEeCCc
Q psy11529          9 INPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAA----------ND-WSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADR   77 (244)
Q Consensus         9 ~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~----------~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~   77 (244)
                      ...|.+++|+|.|.+.++|++.++++|.....-.          .. ....+.-+.|.+.|.|.+|+|+|+++++|+.|.
T Consensus        32 sqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsndk  111 (350)
T KOG0641|consen   32 SQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDK  111 (350)
T ss_pred             hhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCCc
Confidence            5789999999999999999999999987643200          00 011223355899999999999999999999999


Q ss_pred             cEEEEeeeCCCCCc-eeeEEEeccCcceEEEEECCC--------------------------------------------
Q psy11529         78 NAYVWTQNNDDKKW-KPTLVLLRINRAATCVKWSPL--------------------------------------------  112 (244)
Q Consensus        78 ~i~iwd~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~--------------------------------------------  112 (244)
                      +|++...+.++.+. -+.+.+..|.+.|+.++|-.+                                            
T Consensus       112 ~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilalys  191 (350)
T KOG0641|consen  112 TIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILALYS  191 (350)
T ss_pred             eEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEEEE
Confidence            99997632222111 112333445555555555322                                            


Q ss_pred             --CCeEEEeeCCCeEEEEEeecCCCceEEEeeecCC---CCceeEEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCC
Q psy11529        113 --ENKFAAGSGARLISVCYFESENDWWVAKHIKKPI---KSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQS  187 (244)
Q Consensus       113 --~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~---~~~v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  187 (244)
                        +-.+++|+.|.+|++||++...........+...   .+.|.+++..|.|++|++|..|....+||+           
T Consensus       192 wn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydi-----------  260 (350)
T KOG0641|consen  192 WNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDI-----------  260 (350)
T ss_pred             ecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEe-----------
Confidence              2367788889999999999876533332222221   367999999999999999999999999999           


Q ss_pred             CCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCC
Q psy11529        188 TNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQ  241 (244)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~  241 (244)
                             +-++.+..+..|   ...|+++.|+|...|+++++.|.+|++-|++-
T Consensus       261 -------rg~r~iq~f~ph---sadir~vrfsp~a~yllt~syd~~ikltdlqg  304 (350)
T KOG0641|consen  261 -------RGGRMIQRFHPH---SADIRCVRFSPGAHYLLTCSYDMKIKLTDLQG  304 (350)
T ss_pred             -------eCCceeeeeCCC---ccceeEEEeCCCceEEEEecccceEEEeeccc
Confidence                   568889999998   99999999999999999999999999999874

>KOG0647|consensus

Probab=99.97  E-value=1.7e-28  Score=170.59  Aligned_cols=210  Identities=16%  Similarity=0.211  Sum_probs=161.4

Q ss_pred             CCCceEEEEEcC-CCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeC
Q psy11529          8 GINPVTTHAWNN-TRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNN   86 (244)
Q Consensus         8 ~~~~v~~~~~~~-~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~   86 (244)
                      .++.|.+++||| ...+++.++.|++||+|+++.. +.+. -+....|.++|.+++|+.+|..+++|+.|+.+++||  +
T Consensus        26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~-g~~~-~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wD--L  101 (347)
T KOG0647|consen   26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNS-GQLV-PKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWD--L  101 (347)
T ss_pred             cccchheeEeccccCceEEecccCCceEEEEEecC-Cccc-chhhhccCCCeEEEEEccCCceEEeeccCCceEEEE--c
Confidence            478999999999 5556778999999999999763 2222 245566999999999999999999999999999999  7


Q ss_pred             CCCCceeeEEEeccCcceEEEEECCCCC--eEEEeeCCCeEEEEEeecCCCceEE-------------------------
Q psy11529         87 DDKKWKPTLVLLRINRAATCVKWSPLEN--KFAAGSGARLISVCYFESENDWWVA-------------------------  139 (244)
Q Consensus        87 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~~~~~-------------------------  139 (244)
                      .+++   ......|..+|..+.|-+...  .|++|+.|++|+.||.+...+....                         
T Consensus       102 ~S~Q---~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i  178 (347)
T KOG0647|consen  102 ASGQ---VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAERHI  178 (347)
T ss_pred             cCCC---eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCceeEEEecCCcE
Confidence            8886   455567999999999987655  7999999999999999876551110                         


Q ss_pred             ------------EeeecCCCCceeEEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCC
Q psy11529        140 ------------KHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSS  207 (244)
Q Consensus       140 ------------~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (244)
                                  +....+.+-.+.+++..+|....+.|+-+|++.|..+....                .+.-.+|+-|+
T Consensus       179 ~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~----------------~~~nFtFkCHR  242 (347)
T KOG0647|consen  179 AVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPN----------------PKDNFTFKCHR  242 (347)
T ss_pred             EEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCC----------------ccCceeEEEec
Confidence                        00111223467889988888888999999999998884211                13334444442


Q ss_pred             C---C---CCCeEEEEEecCCCEEEEeeCCCcEEEEeCC
Q psy11529        208 S---G---GGWIHSVAFSKDGNKLCWTSHDGSINVRMSQ  240 (244)
Q Consensus       208 ~---~---~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~  240 (244)
                      .   .   -..|++++|+|.-..|+|.+.||++.+||-+
T Consensus       243 ~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkd  281 (347)
T KOG0647|consen  243 STNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKD  281 (347)
T ss_pred             cCCCCCCceEEecceEeecccceEEEecCCceEEEecch
Confidence            1   0   2357889999988899999999999999965

>KOG0310|consensus

Probab=99.97  E-value=7.2e-28  Score=176.94  Aligned_cols=199  Identities=21%  Similarity=0.238  Sum_probs=168.9

Q ss_pred             EEeCCCceEEEEEcCC-CCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCC-CCCeEEEEeCCccEEEE
Q psy11529          5 YSFGINPVTTHAWNNT-RQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAP-NTNRIVTCSADRNAYVW   82 (244)
Q Consensus         5 ~~~~~~~v~~~~~~~~-~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iw   82 (244)
                      +..|+.+|..+.|+|+ +..|++|+.|+.+++||+.+  .  .....+.+|+..|.+.+|+| ++..+++|+.||.|++|
T Consensus       106 ~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~--a--~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~  181 (487)
T KOG0310|consen  106 LYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLST--A--YVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLW  181 (487)
T ss_pred             HhhccCceeEEEecccCCeEEEecCCCceEEEEEcCC--c--EEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEE
Confidence            4457899999999995 55788899999999999988  3  34568899999999999999 56688999999999999


Q ss_pred             eeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEE
Q psy11529         83 TQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLL  162 (244)
Q Consensus        83 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l  162 (244)
                      |.  +... . ......|..+|..+.+-|.|..+++++. ..+++||+-++.+   .......|...|+|+++..++..|
T Consensus       182 Dt--R~~~-~-~v~elnhg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~q---ll~~~~~H~KtVTcL~l~s~~~rL  253 (487)
T KOG0310|consen  182 DT--RSLT-S-RVVELNHGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQ---LLTSMFNHNKTVTCLRLASDSTRL  253 (487)
T ss_pred             Ee--ccCC-c-eeEEecCCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCce---ehhhhhcccceEEEEEeecCCceE
Confidence            94  4442 1 2333578899999999999999999875 5699999997765   344445588999999999999999


Q ss_pred             EEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEE
Q psy11529        163 GCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVR  237 (244)
Q Consensus       163 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw  237 (244)
                      ++++-|+.+++||+                  .+.+.+..+.-    .++|-+++.+|+++.++.|..+|.+.+=
T Consensus       254 lS~sLD~~VKVfd~------------------t~~Kvv~s~~~----~~pvLsiavs~dd~t~viGmsnGlv~~r  306 (487)
T KOG0310|consen  254 LSGSLDRHVKVFDT------------------TNYKVVHSWKY----PGPVLSIAVSPDDQTVVIGMSNGLVSIR  306 (487)
T ss_pred             eecccccceEEEEc------------------cceEEEEeeec----ccceeeEEecCCCceEEEecccceeeee
Confidence            99999999999998                  67888888877    7899999999999999999999987664

>KOG0772|consensus

Probab=99.96  E-value=7.8e-29  Score=183.52  Aligned_cols=212  Identities=16%  Similarity=0.165  Sum_probs=161.0

Q ss_pred             CCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcc----------eeeeeeccCCCceEEEEeCC-CCCeEEEEeCCc
Q psy11529          9 INPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDW----------SQLDVLDGHDLKVTGIDWAP-NTNRIVTCSADR   77 (244)
Q Consensus         9 ~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~----------~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~   77 (244)
                      ...|.+++|++.|..|++.+...+.+|+|..+  -.+          .-+...++|...+++.+|+| +...+++++.||
T Consensus       214 ~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG--~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~Dg  291 (641)
T KOG0772|consen  214 THQINSLQYSVTGDQILVVSGSAQAKLLDRDG--FEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDG  291 (641)
T ss_pred             ccccceeeecCCCCeEEEEecCcceeEEccCC--ceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCC
Confidence            57899999999999988888888999999876  211          11223468999999999999 456789999999


Q ss_pred             cEEEEeeeCCCCCceeeEEEe---ccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCC--ceeE
Q psy11529         78 NAYVWTQNNDDKKWKPTLVLL---RINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKS--TITC  152 (244)
Q Consensus        78 ~i~iwd~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~--~v~~  152 (244)
                      ++++||+ .+..+....+...   +..-.+..++|+|+++.||+|+.||.|.+|+...... .........|..  .|++
T Consensus       292 tlRiWdv-~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v-~p~~~vk~AH~~g~~Its  369 (641)
T KOG0772|consen  292 TLRIWDV-NNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTV-RPVMKVKDAHLPGQDITS  369 (641)
T ss_pred             cEEEEec-CCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCccc-ccceEeeeccCCCCceeE
Confidence            9999995 2333322233222   2344688999999999999999999999999865432 223445566765  8999


Q ss_pred             EEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeC--
Q psy11529        153 LDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSH--  230 (244)
Q Consensus       153 ~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~--  230 (244)
                      +.|++||++|++-+.|+++++||+|+                 ..+++....+-.. ..+-+.++|||+.++|++|..  
T Consensus       370 i~FS~dg~~LlSRg~D~tLKvWDLrq-----------------~kkpL~~~tgL~t-~~~~tdc~FSPd~kli~TGtS~~  431 (641)
T KOG0772|consen  370 ISFSYDGNYLLSRGFDDTLKVWDLRQ-----------------FKKPLNVRTGLPT-PFPGTDCCFSPDDKLILTGTSAP  431 (641)
T ss_pred             EEeccccchhhhccCCCceeeeeccc-----------------cccchhhhcCCCc-cCCCCccccCCCceEEEeccccc
Confidence            99999999999999999999999973                 3445544433210 445678999999999999864  


Q ss_pred             ----CCcEEEEeCCCC
Q psy11529        231 ----DGSINVRMSQQV  242 (244)
Q Consensus       231 ----dg~i~vwd~~~~  242 (244)
                          .|.+.+||..++
T Consensus       432 ~~~~~g~L~f~d~~t~  447 (641)
T KOG0772|consen  432 NGMTAGTLFFFDRMTL  447 (641)
T ss_pred             CCCCCceEEEEeccce
Confidence                467999987765

>KOG0300|consensus

Probab=99.96  E-value=7.9e-29  Score=173.92  Aligned_cols=209  Identities=17%  Similarity=0.201  Sum_probs=182.0

Q ss_pred             EeCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeee
Q psy11529          6 SFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQN   85 (244)
Q Consensus         6 ~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~   85 (244)
                      .-|++.|..++.......+.+++.|.+.+||.++.  +  .++.++.+|.+.|++++|++.+.++++++.|++-.||...
T Consensus       145 ~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Es--g--~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~a  220 (481)
T KOG0300|consen  145 EGHKDGIWHVAADSTQPICGTASADHTARIWSLES--G--ACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAA  220 (481)
T ss_pred             cccccceeeehhhcCCcceeecccccceeEEeecc--c--cceeeecccccceeeEEeccccceEEEccCCcchHHHHHh
Confidence            44688999998887777899999999999999988  6  8999999999999999999999999999999999999721


Q ss_pred             --CC--C------------------------------C--CceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEE
Q psy11529         86 --ND--D------------------------------K--KWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCY  129 (244)
Q Consensus        86 --~~--~------------------------------~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d  129 (244)
                        .+  .                              +  -..+...+.+|...|.+..|-..|+.+++++.|.+..+||
T Consensus       221 v~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwD  300 (481)
T KOG0300|consen  221 VNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWD  300 (481)
T ss_pred             hcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeee
Confidence              00  0                              0  0123455677889999999999999999999999999999


Q ss_pred             eecCCCceEEEeeecCCCCceeEEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCC
Q psy11529        130 FESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSG  209 (244)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (244)
                      ++++..    .....+|....+.++-+|..+++++.+.|.+.++||.+                 ..-..+..|++|   
T Consensus       301 VEtge~----v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFR-----------------eaI~sV~VFQGH---  356 (481)
T KOG0300|consen  301 VETGEV----VNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFR-----------------EAIQSVAVFQGH---  356 (481)
T ss_pred             eccCce----eccccCcchhccccccCCcceEEEEeccCceeEeccch-----------------hhcceeeeeccc---
Confidence            999975    77888999999999999999999999999999999996                 345677889999   


Q ss_pred             CCCeEEEEEecCCCEEEEeeCCCcEEEEeCCCCC
Q psy11529        210 GGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQVL  243 (244)
Q Consensus       210 ~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~  243 (244)
                      ...|+++.|..|. .+++|++|.+|+|||++++.
T Consensus       357 tdtVTS~vF~~dd-~vVSgSDDrTvKvWdLrNMR  389 (481)
T KOG0300|consen  357 TDTVTSVVFNTDD-RVVSGSDDRTVKVWDLRNMR  389 (481)
T ss_pred             ccceeEEEEecCC-ceeecCCCceEEEeeecccc
Confidence            9999999999766 47899999999999999874

>KOG0269|consensus

Probab=99.96  E-value=5.3e-29  Score=192.08  Aligned_cols=202  Identities=20%  Similarity=0.307  Sum_probs=163.3

Q ss_pred             eEEEEEcC-CCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCC-CCCeEEEEeCCccEEEEeeeCCCC
Q psy11529         12 VTTHAWNN-TRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAP-NTNRIVTCSADRNAYVWTQNNDDK   89 (244)
Q Consensus        12 v~~~~~~~-~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~   89 (244)
                      +..+.|+. +.++||+++..|.|.+||+.... +-+.+..+..|+..++++.|++ ...+|++|+.||.|++||+  +..
T Consensus        90 ~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~-rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~Dl--R~~  166 (839)
T KOG0269|consen   90 AADVKWGQLYSNLIATCSTNGVISVWDLNKSI-RNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDL--RSK  166 (839)
T ss_pred             hhhcccccchhhhheeecCCCcEEEEecCccc-cchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEee--ecc
Confidence            44566764 46789999999999999996532 1256678899999999999999 6778999999999999995  444


Q ss_pred             CceeeEEEeccCcceEEEEECCC-CCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEeeCC
Q psy11529         90 KWKPTLVLLRINRAATCVKWSPL-ENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTD  168 (244)
Q Consensus        90 ~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d  168 (244)
                      +-.  .........|+.+.|+|. +.+++++.+.|.+++||++....   ....+..|.++|.++.|+|++.+||||+.|
T Consensus       167 ~S~--~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r---~~~k~~AH~GpV~c~nwhPnr~~lATGGRD  241 (839)
T KOG0269|consen  167 KSK--STFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDR---CEKKLTAHNGPVLCLNWHPNREWLATGGRD  241 (839)
T ss_pred             ccc--ccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchh---HHHHhhcccCceEEEeecCCCceeeecCCC
Confidence            322  223446778999999996 78899999999999999998876   566778999999999999999999999999


Q ss_pred             CeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCC-EEEEee--CCCcEEEEeCCC
Q psy11529        169 FKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGN-KLCWTS--HDGSINVRMSQQ  241 (244)
Q Consensus       169 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~--~dg~i~vwd~~~  241 (244)
                      ++|+|||+..                ...+.+.++..    ..++.++.|-|+.. .|++++  .|-.|+|||++.
T Consensus       242 K~vkiWd~t~----------------~~~~~~~tInT----iapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrR  297 (839)
T KOG0269|consen  242 KMVKIWDMTD----------------SRAKPKHTINT----IAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRR  297 (839)
T ss_pred             ccEEEEeccC----------------CCccceeEEee----cceeeeeeeccCccchhhhhhccccceEEEEeecc
Confidence            9999999832                12344555554    78999999999766 566665  478899999985

>KOG0299|consensus

Probab=99.96  E-value=9e-28  Score=175.34  Aligned_cols=204  Identities=18%  Similarity=0.239  Sum_probs=171.0

Q ss_pred             eCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeC
Q psy11529          7 FGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNN   86 (244)
Q Consensus         7 ~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~   86 (244)
                      .|...+.+++.++||++||+|+.|..|.||+..+  .  +.+..+.+|.+.|.+++|-.....|++++.|+.+++|+  +
T Consensus       200 ~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t--~--ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~--~  273 (479)
T KOG0299|consen  200 GHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDT--L--EHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWS--I  273 (479)
T ss_pred             cccceeEEEEEcCCCcEEEecCCCceEEEecCcc--c--chhhcccccccceeeeeeecCccceeeeecCCceEEEe--h
Confidence            4678899999999999999999999999999988  4  78888999999999999998888899999999999999  5


Q ss_pred             CCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEee
Q psy11529         87 DDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGS  166 (244)
Q Consensus        87 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~  166 (244)
                      +...+  .-++.+|+..|..+.-..-++.+-+|+.|+++++|++....     ...+.++.+.+-|++|-.+. .+++|+
T Consensus       274 ~~~s~--vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~ees-----qlifrg~~~sidcv~~In~~-HfvsGS  345 (479)
T KOG0299|consen  274 DQLSY--VETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEES-----QLIFRGGEGSIDCVAFINDE-HFVSGS  345 (479)
T ss_pred             hHhHH--HHHHhCCccceeeechhcccceEEeccccceeEEEeccccc-----eeeeeCCCCCeeeEEEeccc-ceeecc
Confidence            55443  33457899999999998888888888899999999996554     46667778899999998654 789999


Q ss_pred             CCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCC-CC--------CCCeEEEEEecCCCEEEEeeCCCcEEEE
Q psy11529        167 TDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSS-SG--------GGWIHSVAFSKDGNKLCWTSHDGSINVR  237 (244)
Q Consensus       167 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--------~~~v~~~~~s~~~~~l~~~~~dg~i~vw  237 (244)
                      ++|.|.+|++                  ...+++.+....| ..        ..+|++++..|...++++|+.+|.|++|
T Consensus       346 dnG~IaLWs~------------------~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW  407 (479)
T KOG0299|consen  346 DNGSIALWSL------------------LKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLW  407 (479)
T ss_pred             CCceEEEeee------------------cccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEE
Confidence            9999999999                  3444444433221 10        2389999999999999999999999999


Q ss_pred             eCCCC
Q psy11529        238 MSQQV  242 (244)
Q Consensus       238 d~~~~  242 (244)
                      -+..-
T Consensus       408 ~i~~g  412 (479)
T KOG0299|consen  408 KIEDG  412 (479)
T ss_pred             EecCC
Confidence            88754

>KOG0275|consensus

Probab=99.96  E-value=6.8e-29  Score=174.77  Aligned_cols=205  Identities=14%  Similarity=0.110  Sum_probs=176.2

Q ss_pred             EEeCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeec-cCCCceEEEEeCCCCCeEEEEeCCccEEEEe
Q psy11529          5 YSFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLD-GHDLKVTGIDWAPNTNRIVTCSADRNAYVWT   83 (244)
Q Consensus         5 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd   83 (244)
                      +-...++|.|+.|+.|...+|+|+.||.|+||.+.+  +  .+++.+. .|...|+++.|+.|+..+++++.|.++++.-
T Consensus       259 fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~t--G--~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHG  334 (508)
T KOG0275|consen  259 FMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIET--G--QCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHG  334 (508)
T ss_pred             eeecccceEEEeecccHHHhhccCcCCcEEEEEEec--c--hHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEec
Confidence            334578999999999999999999999999999988  6  7888886 8999999999999999999999999999999


Q ss_pred             eeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEE------------------------
Q psy11529         84 QNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVA------------------------  139 (244)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~------------------------  139 (244)
                        +.+|++...+  .+|.+.|+...|.++|..+++++.||+|++|+..+.......                        
T Consensus       335 --lKSGK~LKEf--rGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iV  410 (508)
T KOG0275|consen  335 --LKSGKCLKEF--RGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIV  410 (508)
T ss_pred             --cccchhHHHh--cCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEE
Confidence              8888865544  689999999999999999999999999999998765431000                        


Q ss_pred             ----------------Eeee---cCCCCceeEEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCcccccccee
Q psy11529        140 ----------------KHIK---KPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCL  200 (244)
Q Consensus       140 ----------------~~~~---~~~~~~v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  200 (244)
                                      ...+   ....+...+++.+|.|.++++.++|+.++.|..                  .+++..
T Consensus       411 CNrsntv~imn~qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~------------------~sG~LE  472 (508)
T KOG0275|consen  411 CNRSNTVYIMNMQGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSV------------------LSGKLE  472 (508)
T ss_pred             EcCCCeEEEEeccceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEe------------------ecCcee
Confidence                            0000   011345667889999999999999999999998                  778888


Q ss_pred             EEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEe
Q psy11529        201 VELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRM  238 (244)
Q Consensus       201 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd  238 (244)
                      .++..|   ...+..++-+|..+.|++-++||.+++|.
T Consensus       473 ~tl~Vh---EkdvIGl~HHPHqNllAsYsEDgllKLWk  507 (508)
T KOG0275|consen  473 RTLPVH---EKDVIGLTHHPHQNLLASYSEDGLLKLWK  507 (508)
T ss_pred             eeeecc---cccccccccCcccchhhhhcccchhhhcC
Confidence            899998   88999999999999999999999999995

>KOG0268|consensus

Probab=99.96  E-value=1.7e-28  Score=174.48  Aligned_cols=209  Identities=17%  Similarity=0.235  Sum_probs=158.3

Q ss_pred             EeCCCceEEEEEcCCC-CeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEee
Q psy11529          6 SFGINPVTTHAWNNTR-QQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQ   84 (244)
Q Consensus         6 ~~~~~~v~~~~~~~~~-~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~   84 (244)
                      ..|.++|.|++=+|.. ..+++|+.||.|+|||+..  .  .+..++++|.+.|..+++..  ..+++++.|.+|+.|.+
T Consensus        63 ~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsq--R--~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~  136 (433)
T KOG0268|consen   63 DGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQ--R--ECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKI  136 (433)
T ss_pred             cccccccchhhcCcchhhhhhccccCceEEEEehhh--h--hhhheeecccCceeeEEecc--cceEEecCCcceeeeec
Confidence            5678999999999976 7899999999999999987  5  78899999999999999987  66888999999999973


Q ss_pred             eCCC-------------------------CCce---------eeEEEeccCcceEEEEECCCC-CeEEEeeCCCeEEEEE
Q psy11529         85 NNDD-------------------------KKWK---------PTLVLLRINRAATCVKWSPLE-NKFAAGSGARLISVCY  129 (244)
Q Consensus        85 ~~~~-------------------------~~~~---------~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~i~d  129 (244)
                      +...                         |+..         +...+.-....+.++.|+|.. ..|++|..|+.|.+||
T Consensus       137 ~~~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD  216 (433)
T KOG0268|consen  137 DGPPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYD  216 (433)
T ss_pred             cCCcceeeeccccccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEe
Confidence            2100                         0000         111111233467888898864 5577777999999999


Q ss_pred             eecCCCceEE--------------------------------------EeeecCCCCceeEEEecCCCCEEEEeeCCCeE
Q psy11529        130 FESENDWWVA--------------------------------------KHIKKPIKSTITCLDWHPNNHLLGCGSTDFKV  171 (244)
Q Consensus       130 ~~~~~~~~~~--------------------------------------~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~i  171 (244)
                      ++...+....                                      ......|.+.|.+++|+|.|+-+++|+.|.+|
T Consensus       217 ~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksI  296 (433)
T KOG0268|consen  217 LRQASPLKKVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSI  296 (433)
T ss_pred             cccCCccceeeeeccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceE
Confidence            9887652211                                      12223456789999999999999999999999


Q ss_pred             EEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCC
Q psy11529        172 RVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQ  240 (244)
Q Consensus       172 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~  240 (244)
                      +||..+                  .+.....+....  ...|.++.||.|.+|+++||+|+.|++|...
T Consensus       297 RIf~~~------------------~~~SRdiYhtkR--Mq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~  345 (433)
T KOG0268|consen  297 RIFPVN------------------HGHSRDIYHTKR--MQHVFCVKYSMDSKYIISGSDDGNVRLWKAK  345 (433)
T ss_pred             EEeecC------------------CCcchhhhhHhh--hheeeEEEEeccccEEEecCCCcceeeeecc
Confidence            999983                  222222221111  5679999999999999999999999999764

>KOG0308|consensus

Probab=99.96  E-value=3e-28  Score=184.76  Aligned_cols=208  Identities=12%  Similarity=0.095  Sum_probs=180.8

Q ss_pred             EeCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEe-CCCCCeEEEEeCCccEEEEee
Q psy11529          6 SFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDW-APNTNRIVTCSADRNAYVWTQ   84 (244)
Q Consensus         6 ~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~l~~~~~d~~i~iwd~   84 (244)
                      +.|.+.|..++...+++.|++++.|.+|++|+...  +..-+..++..|...|.|++. .++...+|+|+-|+.|.+|| 
T Consensus        70 e~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~--~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWD-  146 (735)
T KOG0308|consen   70 EHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHK--DNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWD-  146 (735)
T ss_pred             hhhHhHHhhHHhhcCCCceEEecCCceEEEeeccc--CcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEE-
Confidence            34678899999999999999999999999999876  323577889999999999999 78888999999999999999 


Q ss_pred             eCCCCCc--------eeeEEEe-ccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEe
Q psy11529         85 NNDDKKW--------KPTLVLL-RINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDW  155 (244)
Q Consensus        85 ~~~~~~~--------~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~  155 (244)
                       ++++..        .....+. ++...+++++.++.|..+++|+..+.+++||-++.+.    .....+|...|..+-.
T Consensus       147 -in~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~k----imkLrGHTdNVr~ll~  221 (735)
T KOG0308|consen  147 -INTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKK----IMKLRGHTDNVRVLLV  221 (735)
T ss_pred             -ccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccc----eeeeeccccceEEEEE
Confidence             555421        1111222 6778899999999999999999999999999999876    4445599999999999


Q ss_pred             cCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEE
Q psy11529        156 HPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSIN  235 (244)
Q Consensus       156 ~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~  235 (244)
                      ++||+.+++++.||+|++||+                  ...++++++..|   ...|.++..+|+-.++++|+.||.|.
T Consensus       222 ~dDGt~~ls~sSDgtIrlWdL------------------gqQrCl~T~~vH---~e~VWaL~~~~sf~~vYsG~rd~~i~  280 (735)
T KOG0308|consen  222 NDDGTRLLSASSDGTIRLWDL------------------GQQRCLATYIVH---KEGVWALQSSPSFTHVYSGGRDGNIY  280 (735)
T ss_pred             cCCCCeEeecCCCceEEeeec------------------cccceeeeEEec---cCceEEEeeCCCcceEEecCCCCcEE
Confidence            999999999999999999999                  567899999999   88899999999999999999999999


Q ss_pred             EEeCCCC
Q psy11529        236 VRMSQQV  242 (244)
Q Consensus       236 vwd~~~~  242 (244)
                      .-|+++.
T Consensus       281 ~Tdl~n~  287 (735)
T KOG0308|consen  281 RTDLRNP  287 (735)
T ss_pred             ecccCCc
Confidence            9998873

>KOG0308|consensus

Probab=99.96  E-value=1.8e-28  Score=186.03  Aligned_cols=206  Identities=16%  Similarity=0.207  Sum_probs=169.4

Q ss_pred             EEEEc-CCCCeEEEecCCCeEEEeeeccCCCcc--eeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCCCCC
Q psy11529         14 THAWN-NTRQQLAFTPNNQEVHLYQYEKAANDW--SQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKK   90 (244)
Q Consensus        14 ~~~~~-~~~~~l~~~~~d~~v~v~~~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~   90 (244)
                      .+..+ |.+++|++|+.||.|++|+.....+..  .....++.|..-|+.++...+++.|++++.|-+|++|+  ...+.
T Consensus        29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~--~~~~~  106 (735)
T KOG0308|consen   29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWN--AHKDN  106 (735)
T ss_pred             hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEee--cccCc
Confidence            34444 366789999999999999986533211  23667888999999999999999999999999999999  44443


Q ss_pred             ceeeEEEeccCcceEEEEE-CCCCCeEEEeeCCCeEEEEEeecCCC-----c-eEEEee-ecCCCCceeEEEecCCCCEE
Q psy11529         91 WKPTLVLLRINRAATCVKW-SPLENKFAAGSGARLISVCYFESEND-----W-WVAKHI-KKPIKSTITCLDWHPNNHLL  162 (244)
Q Consensus        91 ~~~~~~~~~~~~~v~~~~~-~~~~~~l~~~~~d~~i~i~d~~~~~~-----~-~~~~~~-~~~~~~~v~~~~~~p~~~~l  162 (244)
                      ..+...+..|...|.|+++ .++...+|+|+-|+.|.+||++++..     . ...... ..++...|.+++.++.|..|
T Consensus       107 ~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~i  186 (735)
T KOG0308|consen  107 TFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTII  186 (735)
T ss_pred             chhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEE
Confidence            3344455679999999999 78888999999999999999997632     0 011111 22667899999999999999


Q ss_pred             EEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCCC
Q psy11529        163 GCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQV  242 (244)
Q Consensus       163 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~  242 (244)
                      ++|+.++.|++||.                  ++.+.+..+++|   ...|+.+..++||+.++++|+||+|++||+...
T Consensus       187 vsGgtek~lr~wDp------------------rt~~kimkLrGH---TdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQ  245 (735)
T KOG0308|consen  187 VSGGTEKDLRLWDP------------------RTCKKIMKLRGH---TDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQ  245 (735)
T ss_pred             EecCcccceEEecc------------------ccccceeeeecc---ccceEEEEEcCCCCeEeecCCCceEEeeecccc
Confidence            99999999999999                  678888889999   999999999999999999999999999999764

>KOG1036|consensus

Probab=99.96  E-value=5.1e-27  Score=163.56  Aligned_cols=216  Identities=13%  Similarity=0.102  Sum_probs=164.4

Q ss_pred             CCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCC
Q psy11529          8 GINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNND   87 (244)
Q Consensus         8 ~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~   87 (244)
                      .++.|+++.|+|.+..|++++.||.+++|+...  .  .....++ |+.++.+++|.+ ...+++|+.||.|+.+|  +.
T Consensus        12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~--~--~l~~~~~-~~~plL~c~F~d-~~~~~~G~~dg~vr~~D--ln   83 (323)
T KOG1036|consen   12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPA--N--SLKLKFK-HGAPLLDCAFAD-ESTIVTGGLDGQVRRYD--LN   83 (323)
T ss_pred             ChhceeeEEEcCcCCcEEEEeccCcEEEEeccc--h--hhhhhee-cCCceeeeeccC-CceEEEeccCceEEEEE--ec
Confidence            378899999999999999999999999999987  3  4444555 899999999997 55788999999999999  67


Q ss_pred             CCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEeeC
Q psy11529         88 DKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGST  167 (244)
Q Consensus        88 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~  167 (244)
                      ++.   ...+..|...+.|+.+++....+++|+.|++|++||.+....     .........|.++...  |+.|++|+.
T Consensus        84 ~~~---~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~-----~~~~d~~kkVy~~~v~--g~~LvVg~~  153 (323)
T KOG1036|consen   84 TGN---EDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVV-----VGTFDQGKKVYCMDVS--GNRLVVGTS  153 (323)
T ss_pred             CCc---ceeeccCCCceEEEEeeccCCeEEEcccCccEEEEecccccc-----ccccccCceEEEEecc--CCEEEEeec
Confidence            766   455667999999999999989999999999999999997433     1112223478888775  678999999


Q ss_pred             CCeEEEEEeeecccccCCCC----------------CC--------------CCccccccceeEEecCCCC------CCC
Q psy11529        168 DFKVRVFSAYIKDIESAPQS----------------TN--------------WGSKSTLGNCLVELNNSSS------GGG  211 (244)
Q Consensus       168 dg~i~i~d~~~~~~~~~~~~----------------~~--------------~~~~~~~~~~~~~~~~~~~------~~~  211 (244)
                      +..+.+||+|+.+......+                ..              .............|+.|..      ...
T Consensus       154 ~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~y  233 (323)
T KOG1036|consen  154 DRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIY  233 (323)
T ss_pred             CceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEE
Confidence            99999999986654331110                00              0001111223344444421      124


Q ss_pred             CeEEEEEecCCCEEEEeeCCCcEEEEeCCC
Q psy11529        212 WIHSVAFSKDGNKLCWTSHDGSINVRMSQQ  241 (244)
Q Consensus       212 ~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~  241 (244)
                      +|++++|+|--..|+||+.||.|.+||+.+
T Consensus       234 PVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~  263 (323)
T KOG1036|consen  234 PVNAIAFHPIHGTFATGGSDGIVNIWDLFN  263 (323)
T ss_pred             EeceeEeccccceEEecCCCceEEEccCcc
Confidence            799999999988999999999999999875

>KOG4283|consensus

Probab=99.96  E-value=4e-27  Score=163.59  Aligned_cols=223  Identities=16%  Similarity=0.226  Sum_probs=168.7

Q ss_pred             eEEeCCCceEEEEEcC-CCCeEEEecCCCeEEEeeeccCCC----cc----ee---eeeeccCCCceEEEEeCC-CCCeE
Q psy11529          4 VYSFGINPVTTHAWNN-TRQQLAFTPNNQEVHLYQYEKAAN----DW----SQ---LDVLDGHDLKVTGIDWAP-NTNRI   70 (244)
Q Consensus         4 ~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~v~~~~~~~~----~~----~~---~~~~~~~~~~v~~~~~~~-~~~~l   70 (244)
                      +...|.+.|+++...+ .|+++++|+.||.|.|||++....    .+    .+   ...-.+|+-.|..+.|-| |.-.+
T Consensus        38 ~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmF  117 (397)
T KOG4283|consen   38 FVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMF  117 (397)
T ss_pred             eeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCcee
Confidence            4456789999999988 789999999999999999975210    00    01   011246788999999999 66678


Q ss_pred             EEEeCCccEEEEeeeCCCCCceeeEEEeccCcceEEEEECCCC---CeEEEeeCCCeEEEEEeecCCCceEEEeeecCCC
Q psy11529         71 VTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLE---NKFAAGSGARLISVCYFESENDWWVAKHIKKPIK  147 (244)
Q Consensus        71 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~  147 (244)
                      .+++.|.++++||  ..+-+..   .....++.|++-+++|-.   .++|+|..+-.|++.|+.++..    .....+|.
T Consensus       118 tssSFDhtlKVWD--tnTlQ~a---~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~----sH~LsGHr  188 (397)
T KOG4283|consen  118 TSSSFDHTLKVWD--TNTLQEA---VDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSF----SHTLSGHR  188 (397)
T ss_pred             ecccccceEEEee--cccceee---EEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcc----eeeecccc
Confidence            8899999999999  6665532   233457889999999853   4688899999999999999974    78889999


Q ss_pred             CceeEEEecCCCC-EEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEE
Q psy11529        148 STITCLDWHPNNH-LLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLC  226 (244)
Q Consensus       148 ~~v~~~~~~p~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  226 (244)
                      +.|.++.|+|... .|++|+.||.|++||+|...-........   .......+..-..|   .+.+..++|+.|+.+++
T Consensus       189 ~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~h---n~k~~p~~~~n~ah---~gkvngla~tSd~~~l~  262 (397)
T KOG4283|consen  189 DGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQH---NTKRPPILKTNTAH---YGKVNGLAWTSDARYLA  262 (397)
T ss_pred             CceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecc---cCccCccccccccc---cceeeeeeecccchhhh
Confidence            9999999999876 57899999999999997432111000000   00111122223345   88899999999999999


Q ss_pred             EeeCCCcEEEEeCCC
Q psy11529        227 WTSHDGSINVRMSQQ  241 (244)
Q Consensus       227 ~~~~dg~i~vwd~~~  241 (244)
                      +++.|..+++|+..+
T Consensus       263 ~~gtd~r~r~wn~~~  277 (397)
T KOG4283|consen  263 SCGTDDRIRVWNMES  277 (397)
T ss_pred             hccCccceEEeeccc
Confidence            999999999999875

>KOG0288|consensus

Probab=99.96  E-value=4.9e-28  Score=174.59  Aligned_cols=204  Identities=18%  Similarity=0.231  Sum_probs=162.1

Q ss_pred             CCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCCC
Q psy11529          9 INPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDD   88 (244)
Q Consensus         9 ~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~   88 (244)
                      .++|+++.|.++++++++++.|+.+++|++..  .  +...++.+|...|+++.|......+++|+.|.+|++||+  ..
T Consensus       219 ~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~--~--r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl--~k  292 (459)
T KOG0288|consen  219 LGNITSIDFDSDNKHVIAASNDKNLRLWNVDS--L--RLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDL--QK  292 (459)
T ss_pred             CCCcceeeecCCCceEEeecCCCceeeeeccc--h--hhhhhhcccccceeeehhhccccceeeccccchhhhhhh--hh
Confidence            57799999999999999999999999999987  4  788899999999999999886666888888888888884  32


Q ss_pred             CCcee-------------------------------------eEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEee
Q psy11529         89 KKWKP-------------------------------------TLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFE  131 (244)
Q Consensus        89 ~~~~~-------------------------------------~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~  131 (244)
                      ..+..                                     ... ....+.|.++..++++..+.+++.|.++.+.|++
T Consensus       293 ~~C~kt~l~~S~cnDI~~~~~~~~SgH~DkkvRfwD~Rs~~~~~s-v~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlR  371 (459)
T KOG0288|consen  293 AYCSKTVLPGSQCNDIVCSISDVISGHFDKKVRFWDIRSADKTRS-VPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLR  371 (459)
T ss_pred             hheeccccccccccceEecceeeeecccccceEEEeccCCceeeE-eecCcceeeEeeccCCeEEeeecCCCceeeeecc
Confidence            21110                                     011 1123578889999999999999999999999998


Q ss_pred             cCCCceEEEeeecCCCCceeEEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCC
Q psy11529        132 SENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGG  211 (244)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (244)
                      +..................+.+.|+|++.|+++|+.||.|+||++                  .++++...+...+. ..
T Consensus       372 t~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v------------------~tgKlE~~l~~s~s-~~  432 (459)
T KOG0288|consen  372 TKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSV------------------FTGKLEKVLSLSTS-NA  432 (459)
T ss_pred             cccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEc------------------cCceEEEEeccCCC-Cc
Confidence            876422222211222346899999999999999999999999999                  67777777776521 22


Q ss_pred             CeEEEEEecCCCEEEEeeCCCcEEEEe
Q psy11529        212 WIHSVAFSKDGNKLCWTSHDGSINVRM  238 (244)
Q Consensus       212 ~v~~~~~s~~~~~l~~~~~dg~i~vwd  238 (244)
                      .|++++|+|.|..|++++.++.+.+|-
T Consensus       433 aI~s~~W~~sG~~Llsadk~~~v~lW~  459 (459)
T KOG0288|consen  433 AITSLSWNPSGSGLLSADKQKAVTLWT  459 (459)
T ss_pred             ceEEEEEcCCCchhhcccCCcceEecC
Confidence            699999999999999999999999993

>KOG1407|consensus

Probab=99.96  E-value=9.5e-27  Score=158.91  Aligned_cols=205  Identities=15%  Similarity=0.270  Sum_probs=166.0

Q ss_pred             EeCCCceEEEEEcC-CCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEee
Q psy11529          6 SFGINPVTTHAWNN-TRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQ   84 (244)
Q Consensus         6 ~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~   84 (244)
                      .-|.+.|-.++|+| ...+|++++.|.+|++||...  +  ++...+....+. .-+.|+|+|.+++.++.|..|.+.|.
T Consensus        61 ~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~--~--k~~~~i~~~~en-i~i~wsp~g~~~~~~~kdD~it~id~  135 (313)
T KOG1407|consen   61 RGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRS--G--KCTARIETKGEN-INITWSPDGEYIAVGNKDDRITFIDA  135 (313)
T ss_pred             cCCCcchhhheeCCCCCcceEEecCCceEEEEEecc--C--cEEEEeeccCcc-eEEEEcCCCCEEEEecCcccEEEEEe
Confidence            34567888999988 556899999999999999977  4  666666644444 45789999999999999998888885


Q ss_pred             e---------------------------CCCC----------CceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEE
Q psy11529         85 N---------------------------NDDK----------KWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISV  127 (244)
Q Consensus        85 ~---------------------------~~~~----------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i  127 (244)
                      +                           +.+|          .+++...+..|+..+.||.|+|+|++||+|+.|..+.+
T Consensus       136 r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSL  215 (313)
T KOG1407|consen  136 RTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSL  215 (313)
T ss_pred             cccceeehhcccceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeec
Confidence            3                           0011          12233445678899999999999999999999999999


Q ss_pred             EEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCC
Q psy11529        128 CYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSS  207 (244)
Q Consensus       128 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (244)
                      ||++.--    +......+.-+|..+.|+-||++||++++|..|-|=++                  .+|..+.+++.  
T Consensus       216 WD~~ELi----C~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~v------------------etGd~~~eI~~--  271 (313)
T KOG1407|consen  216 WDVDELI----CERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEV------------------ETGDRVWEIPC--  271 (313)
T ss_pred             cChhHhh----hheeeccccCceEEEEeccCcceeeccCccceEEeEec------------------ccCCeEEEeec--
Confidence            9998764    35666667789999999999999999999999999888                  78888888876  


Q ss_pred             CCCCCeEEEEEecCCCEEEEeeCC---------CcEEEEeCCC
Q psy11529        208 SGGGWIHSVAFSKDGNKLCWTSHD---------GSINVRMSQQ  241 (244)
Q Consensus       208 ~~~~~v~~~~~s~~~~~l~~~~~d---------g~i~vwd~~~  241 (244)
                        .++...++|+|...+||-+++|         |.+++|-+.+
T Consensus       272 --~~~t~tVAWHPk~~LLAyA~ddk~~d~~reag~vKiFG~~~  312 (313)
T KOG1407|consen  272 --EGPTFTVAWHPKRPLLAYACDDKDGDSNREAGTVKIFGLSN  312 (313)
T ss_pred             --cCCceeEEecCCCceeeEEecCCCCccccccceeEEecCCC
Confidence              7899999999999999877654         5788876654

>KOG0641|consensus

Probab=99.96  E-value=7.3e-26  Score=152.10  Aligned_cols=210  Identities=14%  Similarity=0.148  Sum_probs=159.6

Q ss_pred             eCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCC--------------------------------------------
Q psy11529          7 FGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAA--------------------------------------------   42 (244)
Q Consensus         7 ~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~--------------------------------------------   42 (244)
                      .|++.|.|.+|+|+|++|++|++|++|++...+.+.                                            
T Consensus        87 hhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy  166 (350)
T KOG0641|consen   87 HHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIY  166 (350)
T ss_pred             ccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEE
Confidence            358999999999999999999999999987653311                                            


Q ss_pred             ----CcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCCCCCceeeEEEecc-----CcceEEEEECCCC
Q psy11529         43 ----NDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRI-----NRAATCVKWSPLE  113 (244)
Q Consensus        43 ----~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~-----~~~v~~~~~~~~~  113 (244)
                          +.-+..+.+.+|.+.|.++- +=++-.+++|+.|.+|++||++  -......+....|     .+.|.+++..|.|
T Consensus       167 ~tdc~~g~~~~a~sghtghilaly-swn~~m~~sgsqdktirfwdlr--v~~~v~~l~~~~~~~glessavaav~vdpsg  243 (350)
T KOG0641|consen  167 ITDCGRGQGFHALSGHTGHILALY-SWNGAMFASGSQDKTIRFWDLR--VNSCVNTLDNDFHDGGLESSAVAAVAVDPSG  243 (350)
T ss_pred             EeecCCCCcceeecCCcccEEEEE-EecCcEEEccCCCceEEEEeee--ccceeeeccCcccCCCcccceeEEEEECCCc
Confidence                00012233455666665552 2236678889999999999954  3333333222222     3578999999999


Q ss_pred             CeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCcc
Q psy11529        114 NKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSK  193 (244)
Q Consensus       114 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  193 (244)
                      ++|++|-.|....+||++.+..    .+.+.+|...|.++.|+|...++++++.|..|++-|+...-             
T Consensus       244 rll~sg~~dssc~lydirg~r~----iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdl-------------  306 (350)
T KOG0641|consen  244 RLLASGHADSSCMLYDIRGGRM----IQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDL-------------  306 (350)
T ss_pred             ceeeeccCCCceEEEEeeCCce----eeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccch-------------
Confidence            9999999999999999999875    67788999999999999999999999999999999984211             


Q ss_pred             ccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCC
Q psy11529        194 STLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQ  240 (244)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~  240 (244)
                       ...-++.....|   ...+..+.|+|..-.+++.+.|.++.+|-+.
T Consensus       307 -a~el~~~vv~eh---kdk~i~~rwh~~d~sfisssadkt~tlwa~~  349 (350)
T KOG0641|consen  307 -AHELPIMVVAEH---KDKAIQCRWHPQDFSFISSSADKTATLWALN  349 (350)
T ss_pred             -hhcCceEEEEec---cCceEEEEecCccceeeeccCcceEEEeccC
Confidence             112233344456   7788899999998889999999999999764

>KOG0267|consensus

Probab=99.96  E-value=5.3e-29  Score=190.87  Aligned_cols=202  Identities=18%  Similarity=0.259  Sum_probs=179.7

Q ss_pred             CCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCC
Q psy11529          8 GINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNND   87 (244)
Q Consensus         8 ~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~   87 (244)
                      |...|.++..-..++.+++|+.|..+-+|.+..  .  ..+..+.+|+.+|.++.|+++..+|++|+.+|+|++||  ++
T Consensus        27 hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~k--p--~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wD--le  100 (825)
T KOG0267|consen   27 HSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGK--P--NAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWD--LE  100 (825)
T ss_pred             hhhhhceeeeeccceeeccCCCceeeccccccC--C--chhheeeccCCcceeeecCcchhhhcccccCCceeeee--hh
Confidence            456677777766778999999999999999976  2  55667999999999999999999999999999999999  67


Q ss_pred             CCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEeeC
Q psy11529         88 DKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGST  167 (244)
Q Consensus        88 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~  167 (244)
                      .++...  .+.+|...+.++.|+|-+.+.|.++.|+.+++||++....    .....+|...+..+.|+|+|++++.+++
T Consensus       101 eAk~vr--tLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc----~~~~~s~~~vv~~l~lsP~Gr~v~~g~e  174 (825)
T KOG0267|consen  101 EAKIVR--TLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGC----SHTYKSHTRVVDVLRLSPDGRWVASGGE  174 (825)
T ss_pred             hhhhhh--hhhccccCcceeeeccceEEeccccccccceehhhhccCc----eeeecCCcceeEEEeecCCCceeeccCC
Confidence            666443  5568999999999999999999999999999999997765    5666678889999999999999999999


Q ss_pred             CCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCCC
Q psy11529        168 DFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQV  242 (244)
Q Consensus       168 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~  242 (244)
                      |..++|||+                  ..++.+.+|..|   .+.+..+.|+|..-++++|+.|+++++||++++
T Consensus       175 d~tvki~d~------------------~agk~~~ef~~~---e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletf  228 (825)
T KOG0267|consen  175 DNTVKIWDL------------------TAGKLSKEFKSH---EGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETF  228 (825)
T ss_pred             cceeeeecc------------------cccccccccccc---cccccccccCchhhhhccCCCCceeeeecccee
Confidence            999999999                  778999999999   999999999999999999999999999999976

>KOG4328|consensus

Probab=99.95  E-value=7.5e-27  Score=170.54  Aligned_cols=215  Identities=19%  Similarity=0.190  Sum_probs=170.8

Q ss_pred             eEEeCCCceEEEEEcCCC--CeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCC-CCCeEEEEeCCccEE
Q psy11529          4 VYSFGINPVTTHAWNNTR--QQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAP-NTNRIVTCSADRNAY   80 (244)
Q Consensus         4 ~~~~~~~~v~~~~~~~~~--~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~   80 (244)
                      +...+.++|++++|+|..  +++|+|...|+|-+||+.........+..+..|..+|.++.|+| +...+++.+.||+|+
T Consensus       181 v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR  260 (498)
T KOG4328|consen  181 VAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIR  260 (498)
T ss_pred             eeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceee
Confidence            455678999999999953  57888989999999999532233456677888999999999999 667899999999999


Q ss_pred             EEeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCC-
Q psy11529         81 VWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNN-  159 (244)
Q Consensus        81 iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-  159 (244)
                      +-|  ++................+..+.|+.+...++++..=|...+||.++.+.   ......-|+..|..++++|-. 
T Consensus       261 ~~D--~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s---~~~~~~lh~kKI~sv~~NP~~p  335 (498)
T KOG4328|consen  261 LQD--FEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGS---EYENLRLHKKKITSVALNPVCP  335 (498)
T ss_pred             eee--ecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCc---cchhhhhhhcccceeecCCCCc
Confidence            999  67765544454444556788899999888888888878999999999875   223344566799999999965 


Q ss_pred             CEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeC
Q psy11529        160 HLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMS  239 (244)
Q Consensus       160 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~  239 (244)
                      .+|+|++.|++.+|||+|.-...              ..++-....|   ...|.++.|||++-.|++.+.|..|+|||.
T Consensus       336 ~~laT~s~D~T~kIWD~R~l~~K--------------~sp~lst~~H---rrsV~sAyFSPs~gtl~TT~~D~~IRv~ds  398 (498)
T KOG4328|consen  336 WFLATASLDQTAKIWDLRQLRGK--------------ASPFLSTLPH---RRSVNSAYFSPSGGTLLTTCQDNEIRVFDS  398 (498)
T ss_pred             hheeecccCcceeeeehhhhcCC--------------CCcceecccc---cceeeeeEEcCCCCceEeeccCCceEEeec
Confidence            58999999999999999754322              1123334456   899999999998877999999999999998


Q ss_pred             C
Q psy11529        240 Q  240 (244)
Q Consensus       240 ~  240 (244)
                      .
T Consensus       399 s  399 (498)
T KOG4328|consen  399 S  399 (498)
T ss_pred             c
Confidence            3

>KOG0640|consensus

Probab=99.95  E-value=4.8e-27  Score=164.33  Aligned_cols=221  Identities=12%  Similarity=0.106  Sum_probs=169.0

Q ss_pred             CCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCC
Q psy11529          8 GINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNND   87 (244)
Q Consensus         8 ~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~   87 (244)
                      |.++|+++.|+|....|++|+.|++|++||...+.  .+..........+|.++.|+|.|.+|+.|..-..+++||  ++
T Consensus       171 H~devn~l~FHPre~ILiS~srD~tvKlFDfsK~s--aKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYd--v~  246 (430)
T KOG0640|consen  171 HVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTS--AKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYD--VN  246 (430)
T ss_pred             ccCcccceeecchhheEEeccCCCeEEEEecccHH--HHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEe--cc
Confidence            57999999999999999999999999999997622  133333333578999999999999999999999999999  66


Q ss_pred             CCCceeeEE-EeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCC-CceeEEEecCCCCEEEEe
Q psy11529         88 DKKWKPTLV-LLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIK-STITCLDWHPNNHLLGCG  165 (244)
Q Consensus        88 ~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~-~~v~~~~~~p~~~~l~~~  165 (244)
                      +-++..... -.+|.+.|+++.+++.+++.++++.||.|++||--+++.   .......|. ..|.+..|..+|+++++.
T Consensus       247 T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rC---v~t~~~AH~gsevcSa~Ftkn~kyiLsS  323 (430)
T KOG0640|consen  247 TYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRC---VRTIGNAHGGSEVCSAVFTKNGKYILSS  323 (430)
T ss_pred             ceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHH---HHHHHhhcCCceeeeEEEccCCeEEeec
Confidence            655332221 235788999999999999999999999999999777665   334444554 579999999999999999


Q ss_pred             eCCCeEEEEEeeeccccc-CCCC-------------------------------CCCCccccccceeEEe-cCCCCCCCC
Q psy11529        166 STDFKVRVFSAYIKDIES-APQS-------------------------------TNWGSKSTLGNCLVEL-NNSSSGGGW  212 (244)
Q Consensus       166 ~~dg~i~i~d~~~~~~~~-~~~~-------------------------------~~~~~~~~~~~~~~~~-~~~~~~~~~  212 (244)
                      +.|..+++|.+.++.... ....                               -.|  ..++...+..+ .+|   .+.
T Consensus       324 G~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsW--daRtadr~~l~slgH---n~a  398 (430)
T KOG0640|consen  324 GKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSW--DARTADRVALLSLGH---NGA  398 (430)
T ss_pred             CCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeec--cccchhhhhhcccCC---CCC
Confidence            999999999996443211 0000                               001  11222222222 245   889


Q ss_pred             eEEEEEecCCCEEEEeeCCCcEEEEeCC
Q psy11529        213 IHSVAFSKDGNKLCWTSHDGSINVRMSQ  240 (244)
Q Consensus       213 v~~~~~s~~~~~l~~~~~dg~i~vwd~~  240 (244)
                      ++.+.-||.+.-+++|+.|-.+++|--+
T Consensus       399 ~R~i~HSP~~p~FmTcsdD~raRFWyrr  426 (430)
T KOG0640|consen  399 VRWIVHSPVEPAFMTCSDDFRARFWYRR  426 (430)
T ss_pred             ceEEEeCCCCCceeeecccceeeeeeec
Confidence            9999999999999999999999999643

>KOG0274|consensus

Probab=99.95  E-value=1.5e-26  Score=180.67  Aligned_cols=198  Identities=17%  Similarity=0.185  Sum_probs=171.4

Q ss_pred             EEeCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEee
Q psy11529          5 YSFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQ   84 (244)
Q Consensus         5 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~   84 (244)
                      ..-|.+.|.++++..-+..|++|+.|.+++|||..+  +  .+...+.+|...|.++...  ..++++|+.|.+|++|+ 
T Consensus       245 l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~s--g--~C~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~-  317 (537)
T KOG0274|consen  245 LVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCST--G--ECTHSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWD-  317 (537)
T ss_pred             ccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCC--C--cEEEEecCCCceEEEEEcc--CceEeeccCCceEEEEe-
Confidence            345789999999988788999999999999999877  6  8999999999999998876  45778899999999999 


Q ss_pred             eCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEE
Q psy11529         85 NNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGC  164 (244)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~  164 (244)
                       ++++.....+  .+|...|+++..+  +.++++|+.|++|++||+.+.+.    .....+|...|.++.+.+. ..+++
T Consensus       318 -v~n~~~l~l~--~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~c----l~sl~gH~~~V~sl~~~~~-~~~~S  387 (537)
T KOG0274|consen  318 -VTNGACLNLL--RGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKC----LKSLSGHTGRVYSLIVDSE-NRLLS  387 (537)
T ss_pred             -ccCcceEEEe--ccccccEEEEEec--CCEEEEEecCceEEEEEhhhcee----eeeecCCcceEEEEEecCc-ceEEe
Confidence             7777754433  3499999999998  78999999999999999997764    6777889999999988765 79999


Q ss_pred             eeCCCeEEEEEeeecccccCCCCCCCCcccccc-ceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCCC
Q psy11529        165 GSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLG-NCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQV  242 (244)
Q Consensus       165 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~  242 (244)
                      |+.|+.|++||+                  .+. +++..+.+|   ...+..+.+  .+++|++++.|++|++||.++.
T Consensus       388 gs~D~~IkvWdl------------------~~~~~c~~tl~~h---~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~  443 (537)
T KOG0274|consen  388 GSLDTTIKVWDL------------------RTKRKCIHTLQGH---TSLVSSLLL--RDNFLVSSSADGTIKLWDAEEG  443 (537)
T ss_pred             eeeccceEeecC------------------CchhhhhhhhcCC---ccccccccc--ccceeEeccccccEEEeecccC
Confidence            999999999999                  556 899999998   777766665  6789999999999999998764

>KOG1446|consensus

Probab=99.95  E-value=1.7e-25  Score=156.59  Aligned_cols=207  Identities=12%  Similarity=0.096  Sum_probs=158.0

Q ss_pred             eEEeCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEe
Q psy11529          4 VYSFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWT   83 (244)
Q Consensus         4 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd   83 (244)
                      .+.-|...|.+++.+|-+..+++++.|++|++||++.  .  ++...+.....+  .++|+|+|-++|++...+.|++||
T Consensus        95 YF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~--~--~cqg~l~~~~~p--i~AfDp~GLifA~~~~~~~IkLyD  168 (311)
T KOG1446|consen   95 YFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRV--K--KCQGLLNLSGRP--IAAFDPEGLIFALANGSELIKLYD  168 (311)
T ss_pred             EcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecC--C--CCceEEecCCCc--ceeECCCCcEEEEecCCCeEEEEE
Confidence            4556799999999999999999999999999999986  3  444444433333  478999999999998888999999


Q ss_pred             eeCCCCCceeeEEEe-ccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCC-ceeEEEecCCCCE
Q psy11529         84 QNNDDKKWKPTLVLL-RINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKS-TITCLDWHPNNHL  161 (244)
Q Consensus        84 ~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~-~v~~~~~~p~~~~  161 (244)
                      ++.-.+.....+.+. +...+...+.|+|+|++|+.++..+.+.+.|--.+....  .....+... --...+|.||+++
T Consensus       169 ~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~--tfs~~~~~~~~~~~a~ftPds~F  246 (311)
T KOG1446|consen  169 LRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKS--TFSGYPNAGNLPLSATFTPDSKF  246 (311)
T ss_pred             ecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEee--eEeeccCCCCcceeEEECCCCcE
Confidence            643333332333333 346678899999999999999999999999887776411  111122222 2257889999999


Q ss_pred             EEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCC
Q psy11529        162 LGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQ  240 (244)
Q Consensus       162 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~  240 (244)
                      +++|+.||+|.+|++                  .++..+..+.+.+  ..++.++.|+|.-..++++  +..+.+|=..
T Consensus       247 vl~gs~dg~i~vw~~------------------~tg~~v~~~~~~~--~~~~~~~~fnP~~~mf~sa--~s~l~fw~p~  303 (311)
T KOG1446|consen  247 VLSGSDDGTIHVWNL------------------ETGKKVAVLRGPN--GGPVSCVRFNPRYAMFVSA--SSNLVFWLPD  303 (311)
T ss_pred             EEEecCCCcEEEEEc------------------CCCcEeeEecCCC--CCCccccccCCceeeeeec--CceEEEEecc
Confidence            999999999999999                  7888888888843  8899999999986666655  5577777544

>KOG0274|consensus

Probab=99.95  E-value=8.5e-26  Score=176.48  Aligned_cols=195  Identities=20%  Similarity=0.299  Sum_probs=169.8

Q ss_pred             CCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeee-eccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeC
Q psy11529          8 GINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDV-LDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNN   86 (244)
Q Consensus         8 ~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~   86 (244)
                      +...+.+..|.  ..++++++.+.+|++|+...  +  ..+.. +.+|.+.|.++++..-+.++++|+.|.++++||  .
T Consensus       207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~--~--~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd--~  278 (537)
T KOG0274|consen  207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNN--G--YLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWD--C  278 (537)
T ss_pred             Ccchhhhheee--cCeEEecCCCceeEEeeccc--c--eEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEe--c
Confidence            35677788887  56888999999999999876  4  55555 999999999999988788999999999999999  8


Q ss_pred             CCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEee
Q psy11529         87 DDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGS  166 (244)
Q Consensus        87 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~  166 (244)
                      .++.+...  +.+|...+.++...+  .++++|+.|.+|++|+++++..    .....+|.++|.++..+  +.++++|+
T Consensus       279 ~sg~C~~~--l~gh~stv~~~~~~~--~~~~sgs~D~tVkVW~v~n~~~----l~l~~~h~~~V~~v~~~--~~~lvsgs  348 (537)
T KOG0274|consen  279 STGECTHS--LQGHTSSVRCLTIDP--FLLVSGSRDNTVKVWDVTNGAC----LNLLRGHTGPVNCVQLD--EPLLVSGS  348 (537)
T ss_pred             CCCcEEEE--ecCCCceEEEEEccC--ceEeeccCCceEEEEeccCcce----EEEeccccccEEEEEec--CCEEEEEe
Confidence            88886544  468999999998865  4788889999999999998865    55556699999999998  77999999


Q ss_pred             CCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCCC
Q psy11529        167 TDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQV  242 (244)
Q Consensus       167 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~  242 (244)
                      .|++|++||+                  .++++++++.+|   ...|.++.+.+. ..+++|+.|++|++||+++.
T Consensus       349 ~d~~v~VW~~------------------~~~~cl~sl~gH---~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~  402 (537)
T KOG0274|consen  349 YDGTVKVWDP------------------RTGKCLKSLSGH---TGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTK  402 (537)
T ss_pred             cCceEEEEEh------------------hhceeeeeecCC---cceEEEEEecCc-ceEEeeeeccceEeecCCch
Confidence            9999999999                  789999999999   999999988654 89999999999999999875

>KOG0269|consensus

Probab=99.95  E-value=2.5e-27  Score=182.96  Aligned_cols=206  Identities=13%  Similarity=0.234  Sum_probs=165.8

Q ss_pred             eEEeCCCceEEEEEcC-CCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCC-CCCeEEEEeCCccEEE
Q psy11529          4 VYSFGINPVTTHAWNN-TRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAP-NTNRIVTCSADRNAYV   81 (244)
Q Consensus         4 ~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i   81 (244)
                      ++.-|+..|+++.|++ ...+|++|+.||.|++||+..  .  ....++.+..+.|..++|+| .+.+|+++.+.|.+++
T Consensus       128 ~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~--~--~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lql  203 (839)
T KOG0269|consen  128 VFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRS--K--KSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQL  203 (839)
T ss_pred             HhhhhccceeeeeeccCCccEEEecCCCceEEEEeeec--c--cccccccccchhhhceeeccCCCceEEEecCCceEEE
Confidence            4556889999999998 456899999999999999977  4  56667788889999999999 7889999999999999


Q ss_pred             EeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCC-
Q psy11529         82 WTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNH-  160 (244)
Q Consensus        82 wd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~-  160 (244)
                      ||++ ...+  +...+..|.+.|.|+.|+|++.+||+|+.|+.|+|||+...... .....  ..-.++.++.|-|+.+ 
T Consensus       204 WDlR-qp~r--~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~-~~~tI--nTiapv~rVkWRP~~~~  277 (839)
T KOG0269|consen  204 WDLR-QPDR--CEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAK-PKHTI--NTIAPVGRVKWRPARSY  277 (839)
T ss_pred             eecc-Cchh--HHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCcc-ceeEE--eecceeeeeeeccCccc
Confidence            9953 2333  34455789999999999999999999999999999999876541 11111  2236899999999775 


Q ss_pred             EEEEeeC--CCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEec-CCCEEEEeeCCCcEEEE
Q psy11529        161 LLGCGST--DFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSK-DGNKLCWTSHDGSINVR  237 (244)
Q Consensus       161 ~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vw  237 (244)
                      .|++++.  |-.|+|||++                 +..-+..++..|   ...++.++|.. |...|.+++.||+|..-
T Consensus       278 hLAtcsmv~dtsV~VWDvr-----------------RPYIP~~t~~eH---~~~vt~i~W~~~d~~~l~s~sKD~tv~qh  337 (839)
T KOG0269|consen  278 HLATCSMVVDTSVHVWDVR-----------------RPYIPYATFLEH---TDSVTGIAWDSGDRINLWSCSKDGTVLQH  337 (839)
T ss_pred             hhhhhhccccceEEEEeec-----------------cccccceeeecc---CccccceeccCCCceeeEeecCccHHHHh
Confidence            6777664  6789999996                 455677888888   89999999976 45578899999987654


Q ss_pred             eC
Q psy11529        238 MS  239 (244)
Q Consensus       238 d~  239 (244)
                      .+
T Consensus       338 ~~  339 (839)
T KOG0269|consen  338 LF  339 (839)
T ss_pred             hh
Confidence            33

>KOG0302|consensus

Probab=99.95  E-value=4.1e-26  Score=163.16  Aligned_cols=222  Identities=18%  Similarity=0.310  Sum_probs=165.1

Q ss_pred             eeEEe--CCCceEEEEEcCC-CCeEEEecCCCeEEEeeeccCCCccee-eeeeccCCCceEEEEeCC-CCCeEEEEeCCc
Q psy11529          3 EVYSF--GINPVTTHAWNNT-RQQLAFTPNNQEVHLYQYEKAANDWSQ-LDVLDGHDLKVTGIDWAP-NTNRIVTCSADR   77 (244)
Q Consensus         3 ~~~~~--~~~~v~~~~~~~~-~~~l~~~~~d~~v~v~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~   77 (244)
                      ++|++  |...=++++|||- ...|++|..-+.|++|...+  +.|+. ...+.+|+..|..++||| ....|++|+.|+
T Consensus       203 Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~--g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~Dg  280 (440)
T KOG0302|consen  203 PLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPST--GSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDG  280 (440)
T ss_pred             ceEEecccCccceeeecccccccccccCccccceEeeeecc--CceeecCccccccccchhhhccCCccCceEEeeecCc
Confidence            55665  4677789999993 23577888889999999987  55554 345678999999999999 456899999999


Q ss_pred             cEEEEeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecC
Q psy11529         78 NAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHP  157 (244)
Q Consensus        78 ~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p  157 (244)
                      +|+|||  .+.+.....+....|.+.|+.|.|+....+||+|+.||+++|||++.-+.. .+...++.|..+|+++.|+|
T Consensus       281 sIrIWD--iRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~-~pVA~fk~Hk~pItsieW~p  357 (440)
T KOG0302|consen  281 SIRIWD--IRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSG-QPVATFKYHKAPITSIEWHP  357 (440)
T ss_pred             eEEEEE--ecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCC-CcceeEEeccCCeeEEEecc
Confidence            999999  555544445555889999999999998889999999999999999987642 34556778999999999999


Q ss_pred             C-CCEEEEeeCCCeEEEEEeeecccccC-CCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCC-EEEEeeCCCc
Q psy11529        158 N-NHLLGCGSTDFKVRVFSAYIKDIESA-PQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGN-KLCWTSHDGS  233 (244)
Q Consensus       158 ~-~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~  233 (244)
                      . ...|++++.|.+|.+||+....-... ......+-..-..+++....+    ...+..+.|++.-. +|++.+.||.
T Consensus       358 ~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqG----Qke~KevhWH~QiPG~lvsTa~dGf  432 (440)
T KOG0302|consen  358 HEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQG----QKEVKEVHWHRQIPGLLVSTAIDGF  432 (440)
T ss_pred             ccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecc----hhHhhhheeccCCCCeEEEecccce
Confidence            4 45888889999999999964322110 000000001122345554444    56788999999544 7778888884

>KOG0267|consensus

Probab=99.95  E-value=6.7e-28  Score=184.90  Aligned_cols=194  Identities=19%  Similarity=0.280  Sum_probs=170.9

Q ss_pred             EEeCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEee
Q psy11529          5 YSFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQ   84 (244)
Q Consensus         5 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~   84 (244)
                      +..|+.+|.++.|+++..+|++|+.+|+|++||++.  .  +.++++.+|...+.++.|+|-+.++++|+.|..+++|| 
T Consensus        66 ~~~hespIeSl~f~~~E~LlaagsasgtiK~wDlee--A--k~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD-  140 (825)
T KOG0267|consen   66 LTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEE--A--KIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWD-  140 (825)
T ss_pred             eeccCCcceeeecCcchhhhcccccCCceeeeehhh--h--hhhhhhhccccCcceeeeccceEEeccccccccceehh-
Confidence            466899999999999999999999999999999987  4  77889999999999999999999999999999999999 


Q ss_pred             eCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEE
Q psy11529         85 NNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGC  164 (244)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~  164 (244)
                       .+...+  .....+|...+..+.|+|+|++++.+++|.+++|||...++.    ...+..|.+.+..+.|+|..-++++
T Consensus       141 -~Rk~Gc--~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~----~~ef~~~e~~v~sle~hp~e~Lla~  213 (825)
T KOG0267|consen  141 -IRKKGC--SHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKL----SKEFKSHEGKVQSLEFHPLEVLLAP  213 (825)
T ss_pred             -hhccCc--eeeecCCcceeEEEeecCCCceeeccCCcceeeeeccccccc----ccccccccccccccccCchhhhhcc
Confidence             454433  444456888999999999999999999999999999988864    6667788899999999999999999


Q ss_pred             eeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCC
Q psy11529        165 GSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHD  231 (244)
Q Consensus       165 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d  231 (244)
                      |+.|+++++||+                  .+.+.+......   ...|.+.+|+|+++.+++|..+
T Consensus       214 Gs~d~tv~f~dl------------------etfe~I~s~~~~---~~~v~~~~fn~~~~~~~~G~q~  259 (825)
T KOG0267|consen  214 GSSDRTVRFWDL------------------ETFEVISSGKPE---TDGVRSLAFNPDGKIVLSGEQI  259 (825)
T ss_pred             CCCCceeeeecc------------------ceeEEeeccCCc---cCCceeeeecCCceeeecCchh
Confidence            999999999999                  455666666655   6789999999999999888654

>KOG1273|consensus

Probab=99.95  E-value=1.1e-25  Score=157.69  Aligned_cols=204  Identities=16%  Similarity=0.197  Sum_probs=156.6

Q ss_pred             CceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCCCC
Q psy11529         10 NPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDK   89 (244)
Q Consensus        10 ~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~   89 (244)
                      ....|+.|++.|.+||+|..||.|.|||+.+  .  .....+.+|..+|++++||++|+.|++++.|..|.+||  +..+
T Consensus        24 ~~a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T--~--~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwD--l~~g   97 (405)
T KOG1273|consen   24 PLAECCQFSRWGDYLAVGCANGRVVIYDFDT--F--RIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWD--LLKG   97 (405)
T ss_pred             CccceEEeccCcceeeeeccCCcEEEEEccc--c--chhhhhhccccceeEEEecCCCCEeeeecCCceeEEEe--ccCC
Confidence            3378999999999999999999999999987  3  56677899999999999999999999999999999999  7788


Q ss_pred             CceeeEEEeccCcceEEEEECCCCCe-EEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEeeCC
Q psy11529         90 KWKPTLVLLRINRAATCVKWSPLENK-FAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTD  168 (244)
Q Consensus        90 ~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d  168 (244)
                      .....+.   ..++|+.+.|+|.... .+++-.+..-.+.++................+....+..|.+.|++|++|...
T Consensus        98 s~l~rir---f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsK  174 (405)
T KOG1273|consen   98 SPLKRIR---FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSK  174 (405)
T ss_pred             CceeEEE---ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCc
Confidence            7555544   5789999999996433 33332333344545554322001111111112233445689999999999999


Q ss_pred             CeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCCC
Q psy11529        169 FKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQV  242 (244)
Q Consensus       169 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~  242 (244)
                      |.+.++|.                  .+.+++..++-..  ...|..+.|+..|+.|+..+.|+.|+.|+++..
T Consensus       175 Gkllv~~a------------------~t~e~vas~rits--~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di  228 (405)
T KOG1273|consen  175 GKLLVYDA------------------ETLECVASFRITS--VQAIKQIIVSRKGRFLIINTSDRVIRTYEISDI  228 (405)
T ss_pred             ceEEEEec------------------chheeeeeeeech--heeeeEEEEeccCcEEEEecCCceEEEEehhhh
Confidence            99999998                  6678888777641  267999999999999999999999999998753

>KOG0288|consensus

Probab=99.95  E-value=6.1e-27  Score=169.01  Aligned_cols=213  Identities=19%  Similarity=0.221  Sum_probs=165.6

Q ss_pred             EEeCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEee
Q psy11529          5 YSFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQ   84 (244)
Q Consensus         5 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~   84 (244)
                      ..+|.+.|..+.|-++...|++|+.|..|++|+...  +......++.+..+.|+.++|.++++++++++.|+.+++|+ 
T Consensus       171 ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~--~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wn-  247 (459)
T KOG0288|consen  171 LDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLG--EKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWN-  247 (459)
T ss_pred             hhccccccceeEEccCcchhhhcchhhhhhhhhccc--chhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeee-
Confidence            456789999999999989999999999999999987  54567888998899999999999999999999999999999 


Q ss_pred             eCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceE--------------------------
Q psy11529         85 NNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWV--------------------------  138 (244)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~--------------------------  138 (244)
                       ....+...  ++.+|...|+++.|......+++|+.|.+++.||+........                          
T Consensus       248 -vd~~r~~~--TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~~~~~~SgH~Dkkv  324 (459)
T KOG0288|consen  248 -VDSLRLRH--TLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCSISDVISGHFDKKV  324 (459)
T ss_pred             -ccchhhhh--hhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccccccccceEecceeeeecccccce
Confidence             66665433  3456888888888877655577777777777666654322000                          


Q ss_pred             --------EEeeecCCCCceeEEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCC-CC
Q psy11529        139 --------AKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSS-SG  209 (244)
Q Consensus       139 --------~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  209 (244)
                              ......+..+.|+++..++++..+.+++.|.++.++|+++.                  +....+.... ..
T Consensus       325 RfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~------------------eI~~~~sA~g~k~  386 (459)
T KOG0288|consen  325 RFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTK------------------EIRQTFSAEGFKC  386 (459)
T ss_pred             EEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCCceeeeecccc------------------cEEEEeecccccc
Confidence                    00111223468999999999999999999999999999543                  3344433221 00


Q ss_pred             CCCeEEEEEecCCCEEEEeeCCCcEEEEeCCC
Q psy11529        210 GGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQ  241 (244)
Q Consensus       210 ~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~  241 (244)
                      ....+.+.|||++.|+++||.||.|+||++.+
T Consensus       387 asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~t  418 (459)
T KOG0288|consen  387 ASDWTRVVFSPDGSYVAAGSADGSVYIWSVFT  418 (459)
T ss_pred             ccccceeEECCCCceeeeccCCCcEEEEEccC
Confidence            34588999999999999999999999999865

>KOG0296|consensus

Probab=99.95  E-value=1.1e-25  Score=160.31  Aligned_cols=170  Identities=23%  Similarity=0.305  Sum_probs=150.4

Q ss_pred             eeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeE
Q psy11529         46 SQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLI  125 (244)
Q Consensus        46 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i  125 (244)
                      ..+.++..|+..|.+++.+|+.+++++|+.|..-.+|+  ..++.  ....+.+|+..|.++.|+.+|.+||+|+.+|.|
T Consensus        55 dS~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~--~~~ge--~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v  130 (399)
T KOG0296|consen   55 DSLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWD--ISTGE--FAGELTGHKDSVTCCSFSHDGTLLATGDMSGKV  130 (399)
T ss_pred             cceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEE--ccCCc--ceeEecCCCCceEEEEEccCceEEEecCCCccE
Confidence            34668889999999999999999999999999999999  77877  355667999999999999999999999999999


Q ss_pred             EEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecC
Q psy11529        126 SVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNN  205 (244)
Q Consensus       126 ~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (244)
                      +||...++...+..    ...-..+.-+.|+|.+..|+.|+.||.+-+|.+                  ........+.+
T Consensus       131 ~v~~~stg~~~~~~----~~e~~dieWl~WHp~a~illAG~~DGsvWmw~i------------------p~~~~~kv~~G  188 (399)
T KOG0296|consen  131 LVFKVSTGGEQWKL----DQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQI------------------PSQALCKVMSG  188 (399)
T ss_pred             EEEEcccCceEEEe----ecccCceEEEEecccccEEEeecCCCcEEEEEC------------------CCcceeeEecC
Confidence            99999998762222    233467888999999999999999999999999                  56677888999


Q ss_pred             CCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCCCCC
Q psy11529        206 SSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQVLP  244 (244)
Q Consensus       206 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~p  244 (244)
                      |   ..++++=.|.|||+.++++..||+|++||+.+-.|
T Consensus       189 h---~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p  224 (399)
T KOG0296|consen  189 H---NSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQP  224 (399)
T ss_pred             C---CCCcccccccCCCceEEEEecCceEEEEecCCCce
Confidence            8   99999999999999999999999999999987654

>KOG1408|consensus

Probab=99.95  E-value=2.2e-26  Score=177.03  Aligned_cols=203  Identities=15%  Similarity=0.156  Sum_probs=168.8

Q ss_pred             CCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCC---CCCeEEEEeCCccEEEEeee
Q psy11529          9 INPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAP---NTNRIVTCSADRNAYVWTQN   85 (244)
Q Consensus         9 ~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~d~~i~iwd~~   85 (244)
                      +..+.+++.+|+|++||+|..-|.++||++..  -  +....+..|+..|.|+.|+.   ..++||+++.|.-|++||+.
T Consensus       459 r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~--l--~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~  534 (1080)
T KOG1408|consen  459 RFGFRALAVSPDGQHLASGDRGGNLRVYDLQE--L--EYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVK  534 (1080)
T ss_pred             ccceEEEEECCCcceecccCccCceEEEEehh--h--hhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecc
Confidence            56899999999999999999999999999976  3  66778889999999999986   35689999999999999952


Q ss_pred             CCCCCceeeEEEec-------------------------------------------------cCcceEEEEECCCCCeE
Q psy11529         86 NDDKKWKPTLVLLR-------------------------------------------------INRAATCVKWSPLENKF  116 (244)
Q Consensus        86 ~~~~~~~~~~~~~~-------------------------------------------------~~~~v~~~~~~~~~~~l  116 (244)
                        .. +.....+.+                                                 ....++.++..|..+++
T Consensus       535 --rn-y~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v  611 (1080)
T KOG1408|consen  535 --RN-YDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLV  611 (1080)
T ss_pred             --cc-cchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceE
Confidence              11 000000011                                                 12356778888888899


Q ss_pred             EEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccc
Q psy11529        117 AAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTL  196 (244)
Q Consensus       117 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~  196 (244)
                      ++++.|..|+||+++++++....+ -...|.+....+...|.|.|+++.+.|.++.++|.                  .+
T Consensus       612 ~t~cQDrnirif~i~sgKq~k~FK-gs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df------------------~s  672 (1080)
T KOG1408|consen  612 VTVCQDRNIRIFDIESGKQVKSFK-GSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDF------------------VS  672 (1080)
T ss_pred             EEEecccceEEEeccccceeeeec-ccccCCCceEEEEECCCccEEEEeecCCceEEEEe------------------cc
Confidence            999999999999999998622211 12345678889999999999999999999999999                  78


Q ss_pred             cceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCC
Q psy11529        197 GNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQ  240 (244)
Q Consensus       197 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~  240 (244)
                      ++++..+.+|   ...|+.+.|.+|.+.|++.+.||.|.||.+.
T Consensus       673 gEcvA~m~GH---sE~VTG~kF~nDCkHlISvsgDgCIFvW~lp  713 (1080)
T KOG1408|consen  673 GECVAQMTGH---SEAVTGVKFLNDCKHLISVSGDGCIFVWKLP  713 (1080)
T ss_pred             chhhhhhcCc---chheeeeeecccchhheeecCCceEEEEECc
Confidence            9999999999   9999999999999999999999999999885

>KOG0283|consensus

Probab=99.95  E-value=1.5e-26  Score=180.02  Aligned_cols=165  Identities=17%  Similarity=0.249  Sum_probs=134.9

Q ss_pred             eeec-cCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCCC-------------------------------C---C---
Q psy11529         49 DVLD-GHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDD-------------------------------K---K---   90 (244)
Q Consensus        49 ~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-------------------------------~---~---   90 (244)
                      +.+. .|++.|+++.||+||+|||+|+.|+.|+||.+ .+.                               .   .   
T Consensus       260 Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkV-ie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~  338 (712)
T KOG0283|consen  260 QEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKV-IESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSS  338 (712)
T ss_pred             eccccccCCcEEEEEeCCCCceeeecCCCceEEEEEE-eccchhcccccccchhhhhhhhccccCccccccccccccccc
Confidence            3445 79999999999999999999999999999996 220                               0   0   


Q ss_pred             --------------------ceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCce
Q psy11529         91 --------------------WKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTI  150 (244)
Q Consensus        91 --------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v  150 (244)
                                          ..+...+.+|.+.|..+.|+.+ ++|++++.|.+|++|++.....     .....|..-|
T Consensus       339 ~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~C-----L~~F~HndfV  412 (712)
T KOG0283|consen  339 SRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKEC-----LKVFSHNDFV  412 (712)
T ss_pred             cccccCCccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcce-----eeEEecCCee
Confidence                                0011234578889999999976 6899999999999999998765     3334578999


Q ss_pred             eEEEecC-CCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEee
Q psy11529        151 TCLDWHP-NNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTS  229 (244)
Q Consensus       151 ~~~~~~p-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~  229 (244)
                      +|++|+| |.+|+++|+-||.++||++                  ...+.+ .+..-   ..-|++++|.|||++.+.|+
T Consensus       413 TcVaFnPvDDryFiSGSLD~KvRiWsI------------------~d~~Vv-~W~Dl---~~lITAvcy~PdGk~avIGt  470 (712)
T KOG0283|consen  413 TCVAFNPVDDRYFISGSLDGKVRLWSI------------------SDKKVV-DWNDL---RDLITAVCYSPDGKGAVIGT  470 (712)
T ss_pred             EEEEecccCCCcEeecccccceEEeec------------------CcCeeE-eehhh---hhhheeEEeccCCceEEEEE
Confidence            9999999 7789999999999999998                  333333 34433   67899999999999999999


Q ss_pred             CCCcEEEEeCCCC
Q psy11529        230 HDGSINVRMSQQV  242 (244)
Q Consensus       230 ~dg~i~vwd~~~~  242 (244)
                      .+|.+++|+...+
T Consensus       471 ~~G~C~fY~t~~l  483 (712)
T KOG0283|consen  471 FNGYCRFYDTEGL  483 (712)
T ss_pred             eccEEEEEEccCC
Confidence            9999999998865

>KOG1274|consensus

Probab=99.94  E-value=6.6e-25  Score=172.53  Aligned_cols=213  Identities=15%  Similarity=0.170  Sum_probs=165.1

Q ss_pred             EeCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceee----------------------------ee-------
Q psy11529          6 SFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQL----------------------------DV-------   50 (244)
Q Consensus         6 ~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~----------------------------~~-------   50 (244)
                      .+|...-+.++|.|+|+.|++++.||.|++|+...+...++.+                            .+       
T Consensus        10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~~~~   89 (933)
T KOG1274|consen   10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYSNHFLTGSEQNTVLRYKFPSGEED   89 (933)
T ss_pred             hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeecccceEEeeccceEEEeeCCCCCcc
Confidence            3577889999999999999999999999999864321000100                            00       


Q ss_pred             --eccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEE
Q psy11529         51 --LDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVC  128 (244)
Q Consensus        51 --~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~  128 (244)
                        +...+-++.+++|+-+|+++|.|+.|-.|++-+  ..+...  ...+.+|..+|.++.|+|++++||+.+.||.|++|
T Consensus        90 ~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~--~~D~s~--~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw  165 (933)
T KOG1274|consen   90 TILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLN--LDDSSQ--EKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIW  165 (933)
T ss_pred             ceeeeeeccceEEEEecCCcEEEeecCceeEEEEe--ccccch--heeecccCCceeeeeEcCCCCEEEEEecCceEEEE
Confidence              112245788999999999999999999999999  555542  45567899999999999999999999999999999


Q ss_pred             EeecCCCceEEEeeecC----CCCceeEEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEec
Q psy11529        129 YFESENDWWVAKHIKKP----IKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELN  204 (244)
Q Consensus       129 d~~~~~~~~~~~~~~~~----~~~~v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (244)
                      ++..+............    ....+..++|+|+|..++....|+.|++|+.                  ..+.....+.
T Consensus       166 ~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r------------------~~we~~f~Lr  227 (933)
T KOG1274|consen  166 DLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSR------------------KGWELQFKLR  227 (933)
T ss_pred             EcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEcc------------------CCceeheeec
Confidence            99987652222211111    1346788999999888888889999999998                  5566666665


Q ss_pred             CCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCC
Q psy11529        205 NSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQ  241 (244)
Q Consensus       205 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~  241 (244)
                      ..+. ...+..++|+|+|+|||+++.||.|.|||.++
T Consensus       228 ~~~~-ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t  263 (933)
T KOG1274|consen  228 DKLS-SSKFSDLQWSPNGKYIAASTLDGQILVWNVDT  263 (933)
T ss_pred             cccc-ccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence            4321 34489999999999999999999999999985

>KOG0278|consensus

Probab=99.94  E-value=1.3e-26  Score=157.49  Aligned_cols=204  Identities=17%  Similarity=0.184  Sum_probs=176.7

Q ss_pred             EEeCCCceEEEEEcC---CCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEE
Q psy11529          5 YSFGINPVTTHAWNN---TRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYV   81 (244)
Q Consensus         5 ~~~~~~~v~~~~~~~---~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i   81 (244)
                      .+-|..||-.++|||   +|-+|++++.|+.-.+-+-++  +  .-+.++.+|+++|++...+.+..+-++++.|-+-++
T Consensus        10 c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~t--g--dwigtfeghkgavw~~~l~~na~~aasaaadftakv   85 (334)
T KOG0278|consen   10 CHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDT--G--DWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKV   85 (334)
T ss_pred             EcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCC--C--CcEEeeeccCcceeeeecCchhhhhhhhcccchhhh
Confidence            345789999999986   788899999999877666655  5  567899999999999999998888999999999999


Q ss_pred             EeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCE
Q psy11529         82 WTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHL  161 (244)
Q Consensus        82 wd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~  161 (244)
                      ||  .-++.....   ..|...|..++|+.|.++|++|+.+..++|||++..+-   ......+|.+.|..+-|....+.
T Consensus        86 w~--a~tgdelhs---f~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~A---pp~E~~ghtg~Ir~v~wc~eD~~  157 (334)
T KOG0278|consen   86 WD--AVTGDELHS---FEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKA---PPKEISGHTGGIRTVLWCHEDKC  157 (334)
T ss_pred             hh--hhhhhhhhh---hhhhheeeeEEecccchhhhccchHHHhhhhhccCCCC---CchhhcCCCCcceeEEEeccCce
Confidence            99  777774333   45888999999999999999999999999999998765   45667788999999999998889


Q ss_pred             EEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCC
Q psy11529        162 LGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQ  241 (244)
Q Consensus       162 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~  241 (244)
                      |++.++|++||+||.                  +++..+.++..    ..+|+++..++||++|.++ ..+.|++||..+
T Consensus       158 iLSSadd~tVRLWD~------------------rTgt~v~sL~~----~s~VtSlEvs~dG~ilTia-~gssV~Fwdaks  214 (334)
T KOG0278|consen  158 ILSSADDKTVRLWDH------------------RTGTEVQSLEF----NSPVTSLEVSQDGRILTIA-YGSSVKFWDAKS  214 (334)
T ss_pred             EEeeccCCceEEEEe------------------ccCcEEEEEec----CCCCcceeeccCCCEEEEe-cCceeEEecccc
Confidence            999999999999999                  67888888887    7889999999999987655 567899999987


Q ss_pred             CC
Q psy11529        242 VL  243 (244)
Q Consensus       242 ~~  243 (244)
                      +-
T Consensus       215 f~  216 (334)
T KOG0278|consen  215 FG  216 (334)
T ss_pred             cc
Confidence            63

>KOG0299|consensus

Probab=99.94  E-value=3.4e-25  Score=162.02  Aligned_cols=210  Identities=16%  Similarity=0.179  Sum_probs=172.0

Q ss_pred             eEEeCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCc-------------ceeeeee-ccCCCceEEEEeCCCCCe
Q psy11529          4 VYSFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAAND-------------WSQLDVL-DGHDLKVTGIDWAPNTNR   69 (244)
Q Consensus         4 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~-------------~~~~~~~-~~~~~~v~~~~~~~~~~~   69 (244)
                      ++.-|.-+|.+++++|++++.++++.+++|.=|++......             ..+...- ++|...+.+++.++||+|
T Consensus       137 ~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgky  216 (479)
T KOG0299|consen  137 VIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKY  216 (479)
T ss_pred             eeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcE
Confidence            34457889999999999999999999999999997551100             0011111 378889999999999999


Q ss_pred             EEEEeCCccEEEEeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCc
Q psy11529         70 IVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKST  149 (244)
Q Consensus        70 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~  149 (244)
                      |++|+.|..|.||+  ..+.+.  ...+.+|.+.|.+++|-.....|++++.|+.+++|+++....    .....+|+..
T Consensus       217 latgg~d~~v~Iw~--~~t~eh--v~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~----vetlyGHqd~  288 (479)
T KOG0299|consen  217 LATGGRDRHVQIWD--CDTLEH--VKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSY----VETLYGHQDG  288 (479)
T ss_pred             EEecCCCceEEEec--Ccccch--hhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHH----HHHHhCCccc
Confidence            99999999999999  677664  344578999999999998888999999999999999988764    5667889999


Q ss_pred             eeEEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEee
Q psy11529        150 ITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTS  229 (244)
Q Consensus       150 v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~  229 (244)
                      |.++.....++.+-+|+.|.++++|++.                   .+....+.++   .+.+-+++|- +...+++|+
T Consensus       289 v~~IdaL~reR~vtVGgrDrT~rlwKi~-------------------eesqlifrg~---~~sidcv~~I-n~~HfvsGS  345 (479)
T KOG0299|consen  289 VLGIDALSRERCVTVGGRDRTVRLWKIP-------------------EESQLIFRGG---EGSIDCVAFI-NDEHFVSGS  345 (479)
T ss_pred             eeeechhcccceEEeccccceeEEEecc-------------------ccceeeeeCC---CCCeeeEEEe-cccceeecc
Confidence            9999999888888888899999999981                   2233346666   7889999997 455788999


Q ss_pred             CCCcEEEEeCCCCCC
Q psy11529        230 HDGSINVRMSQQVLP  244 (244)
Q Consensus       230 ~dg~i~vwd~~~~~p  244 (244)
                      ++|.|.+|++.+..|
T Consensus       346 dnG~IaLWs~~KKkp  360 (479)
T KOG0299|consen  346 DNGSIALWSLLKKKP  360 (479)
T ss_pred             CCceEEEeeecccCc
Confidence            999999999988766

>KOG0300|consensus

Probab=99.94  E-value=3e-25  Score=156.06  Aligned_cols=210  Identities=17%  Similarity=0.225  Sum_probs=178.0

Q ss_pred             eEEeCCCceEEEEEcCCCCeEEEecCCCeEEEeee------ccCC-----------------------------Cc-cee
Q psy11529          4 VYSFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQY------EKAA-----------------------------ND-WSQ   47 (244)
Q Consensus         4 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~------~~~~-----------------------------~~-~~~   47 (244)
                      .|.-|.+.|+++.|++.+.++++++.|++-.||..      ..+.                             .. -.+
T Consensus       185 ~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvP  264 (481)
T KOG0300|consen  185 TYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVP  264 (481)
T ss_pred             eecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeee
Confidence            45667999999999999999999999999999972      1100                             00 024


Q ss_pred             eeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEE
Q psy11529         48 LDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISV  127 (244)
Q Consensus        48 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i  127 (244)
                      +..+++|.+.|.+..|-..|+.+++++.|.+-.+||  +++++...  .+.+|....+.++-+|..+++++++.|.+.++
T Consensus       265 l~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwD--VEtge~v~--~LtGHd~ELtHcstHptQrLVvTsSrDtTFRL  340 (481)
T KOG0300|consen  265 LMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWD--VETGEVVN--ILTGHDSELTHCSTHPTQRLVVTSSRDTTFRL  340 (481)
T ss_pred             eeeeeccccceEehhhhcCcceeeeeeccccceeee--eccCceec--cccCcchhccccccCCcceEEEEeccCceeEe
Confidence            556789999999999999999999999999999999  88988544  34689999999999999999999999999999


Q ss_pred             EEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCC
Q psy11529        128 CYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSS  207 (244)
Q Consensus       128 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (244)
                      ||++..-.   ....+.+|...|+++.|..+. .+++|++|.+|++||+++                 ...++.++..  
T Consensus       341 WDFReaI~---sV~VFQGHtdtVTS~vF~~dd-~vVSgSDDrTvKvWdLrN-----------------MRsplATIRt--  397 (481)
T KOG0300|consen  341 WDFREAIQ---SVAVFQGHTDTVTSVVFNTDD-RVVSGSDDRTVKVWDLRN-----------------MRSPLATIRT--  397 (481)
T ss_pred             ccchhhcc---eeeeecccccceeEEEEecCC-ceeecCCCceEEEeeecc-----------------ccCcceeeec--
Confidence            99996543   567889999999999999765 678999999999999973                 3566777777  


Q ss_pred             CCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCCC
Q psy11529        208 SGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQV  242 (244)
Q Consensus       208 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~  242 (244)
                        ..+++.++.+..+..|+.--++..|++||++-.
T Consensus       398 --dS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~  430 (481)
T KOG0300|consen  398 --DSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGN  430 (481)
T ss_pred             --CCccceeEeecCCceEEeccCCceEEEEecCCC
Confidence              788999999998889998888899999999754

>KOG0646|consensus

Probab=99.94  E-value=2.6e-25  Score=162.84  Aligned_cols=213  Identities=16%  Similarity=0.208  Sum_probs=166.0

Q ss_pred             EEeCCCceEEEEEcCCCCeEEEecCCCeEEEeeecc-----CCCcceeeeeeccCCCceEEEEeCCC--CCeEEEEeCCc
Q psy11529          5 YSFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEK-----AANDWSQLDVLDGHDLKVTGIDWAPN--TNRIVTCSADR   77 (244)
Q Consensus         5 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~-----~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~   77 (244)
                      ...|-..|+|+.|+.||.+|++|+.||.|.+|.+..     .....++.+.+..|+-+|+++...+.  ..++++++.|.
T Consensus       119 ~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~  198 (476)
T KOG0646|consen  119 LSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDR  198 (476)
T ss_pred             HHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCc
Confidence            445678999999999999999999999999998743     11245788899999999999998763  45899999999


Q ss_pred             cEEEEeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCC------------ceEEEeeecC
Q psy11529         78 NAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESEND------------WWVAKHIKKP  145 (244)
Q Consensus        78 ~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~------------~~~~~~~~~~  145 (244)
                      ++++||  +..+.......   .+..+.+++.+|.++.+++|+.+|.|.+.++..-..            .........+
T Consensus       199 t~k~wd--lS~g~LLlti~---fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~G  273 (476)
T KOG0646|consen  199 TIKLWD--LSLGVLLLTIT---FPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVG  273 (476)
T ss_pred             eEEEEE--eccceeeEEEe---cCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeecc
Confidence            999999  77777544443   578899999999999999999999999988765431            1122344456


Q ss_pred             CCC--ceeEEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCC
Q psy11529        146 IKS--TITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGN  223 (244)
Q Consensus       146 ~~~--~v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  223 (244)
                      |.+  .|+|++++-||.+|++|+.||.++|||+                  ...+++.++...   .++|+.+.+.|--+
T Consensus       274 h~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi------------------~S~Q~iRtl~~~---kgpVtnL~i~~~~~  332 (476)
T KOG0646|consen  274 HENESAITCLAISTDGTLLLSGDEDGKVCVWDI------------------YSKQCIRTLQTS---KGPVTNLQINPLER  332 (476)
T ss_pred             ccCCcceeEEEEecCccEEEeeCCCCCEEEEec------------------chHHHHHHHhhh---ccccceeEeecccc
Confidence            666  9999999999999999999999999999                  566777776643   78899999976443


Q ss_pred             EEEE-eeCCCcEEEEeCCCCC
Q psy11529        224 KLCW-TSHDGSINVRMSQQVL  243 (244)
Q Consensus       224 ~l~~-~~~dg~i~vwd~~~~~  243 (244)
                      -.+. -.....+-.|++..+.
T Consensus       333 ~~~l~~~~~ps~~~~~lkr~i  353 (476)
T KOG0646|consen  333 GIILFEHKQPSLPNPHLKRMI  353 (476)
T ss_pred             ceecccccCccCCchHhhccC
Confidence            2322 3334456666665554

>KOG0293|consensus

Probab=99.94  E-value=1e-25  Score=163.01  Aligned_cols=172  Identities=17%  Similarity=0.273  Sum_probs=147.2

Q ss_pred             eeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeE
Q psy11529         46 SQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLI  125 (244)
Q Consensus        46 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i  125 (244)
                      +..+.+..|...|.-+.||++|++||+++.|.+..+|++ ..........++.+|..+|..+.|+||.++|++|+.+..+
T Consensus       215 qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v-~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~  293 (519)
T KOG0293|consen  215 QTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIV-VYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVL  293 (519)
T ss_pred             hhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEE-ecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHhe
Confidence            455677889999999999999999999999999999997 4555556667778999999999999999999999999999


Q ss_pred             EEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecC
Q psy11529        126 SVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNN  205 (244)
Q Consensus       126 ~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (244)
                      .+||..++..   ......++...+.+++|.|||..+++|+.|+.+..||+                   .+..+..+++
T Consensus       294 ~lwDv~tgd~---~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdl-------------------Dgn~~~~W~g  351 (519)
T KOG0293|consen  294 SLWDVDTGDL---RHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDL-------------------DGNILGNWEG  351 (519)
T ss_pred             eeccCCcchh---hhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecC-------------------Ccchhhcccc
Confidence            9999999975   22333345678999999999999999999999999997                   4666666665


Q ss_pred             CCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCCC
Q psy11529        206 SSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQV  242 (244)
Q Consensus       206 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~  242 (244)
                      -.  ...|.+++.++||+++++.+.|..|++++.++.
T Consensus       352 vr--~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~  386 (519)
T KOG0293|consen  352 VR--DPKVHDLAITYDGKYVLLVTVDKKIRLYNREAR  386 (519)
T ss_pred             cc--cceeEEEEEcCCCcEEEEEecccceeeechhhh
Confidence            42  456999999999999999999999999998653

>KOG2096|consensus

Probab=99.94  E-value=1.4e-24  Score=152.52  Aligned_cols=215  Identities=12%  Similarity=0.102  Sum_probs=155.8

Q ss_pred             EeCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeecc--CCCceEEEEeCCCCCeE-EEEeCCccEEEE
Q psy11529          6 SFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDG--HDLKVTGIDWAPNTNRI-VTCSADRNAYVW   82 (244)
Q Consensus         6 ~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l-~~~~~d~~i~iw   82 (244)
                      .-|.+.|++++|+.||++|++++.|+.|+||++.+...  +..+.++.  .-+.-+.+.|+||.+-+ +++....++++|
T Consensus        83 KgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~--~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vy  160 (420)
T KOG2096|consen   83 KGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFEN--KEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVY  160 (420)
T ss_pred             hccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhh--hhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEE
Confidence            34689999999999999999999999999999876211  22222211  12245789999987654 455567789999


Q ss_pred             eeeC-CCCCceeeE-------EEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEE
Q psy11529         83 TQNN-DDKKWKPTL-------VLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLD  154 (244)
Q Consensus        83 d~~~-~~~~~~~~~-------~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~  154 (244)
                      .+.- ++|......       ....|...+..+-...++.+|++++.|..|.+|+++ ++.    ..........-...+
T Consensus       161 k~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~----L~~idtnq~~n~~aa  235 (420)
T KOG2096|consen  161 KLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQL----LQSIDTNQSSNYDAA  235 (420)
T ss_pred             EeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cce----eeeecccccccccee
Confidence            8521 122211111       112345566677777889999999999999999999 433    233333445667889


Q ss_pred             ecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcE
Q psy11529        155 WHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSI  234 (244)
Q Consensus       155 ~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i  234 (244)
                      .+|+|+++++++-.-.+++|.+--..-     .     ....-..+.++.+|   ...|..++|+++.+.+++.+.||++
T Consensus       236 vSP~GRFia~~gFTpDVkVwE~~f~kd-----G-----~fqev~rvf~LkGH---~saV~~~aFsn~S~r~vtvSkDG~w  302 (420)
T KOG2096|consen  236 VSPDGRFIAVSGFTPDVKVWEPIFTKD-----G-----TFQEVKRVFSLKGH---QSAVLAAAFSNSSTRAVTVSKDGKW  302 (420)
T ss_pred             eCCCCcEEEEecCCCCceEEEEEeccC-----c-----chhhhhhhheeccc---hhheeeeeeCCCcceeEEEecCCcE
Confidence            999999999999999999999731110     0     00223456788999   9999999999999999999999999


Q ss_pred             EEEeCC
Q psy11529        235 NVRMSQ  240 (244)
Q Consensus       235 ~vwd~~  240 (244)
                      +|||++
T Consensus       303 riwdtd  308 (420)
T KOG2096|consen  303 RIWDTD  308 (420)
T ss_pred             EEeecc
Confidence            999975

>KOG0305|consensus

Probab=99.94  E-value=3.5e-25  Score=167.80  Aligned_cols=192  Identities=16%  Similarity=0.270  Sum_probs=157.5

Q ss_pred             EEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCCCCCceee
Q psy11529         15 HAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKWKPT   94 (244)
Q Consensus        15 ~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~   94 (244)
                      +.|+ ..+.+|+|. ...|++|+...  +....+..+  ++..|+++.|+++|.+|++|..+|.|.|||  ....+... 
T Consensus       183 ldWs-s~n~laVal-g~~vylW~~~s--~~v~~l~~~--~~~~vtSv~ws~~G~~LavG~~~g~v~iwD--~~~~k~~~-  253 (484)
T KOG0305|consen  183 LDWS-SANVLAVAL-GQSVYLWSASS--GSVTELCSF--GEELVTSVKWSPDGSHLAVGTSDGTVQIWD--VKEQKKTR-  253 (484)
T ss_pred             hhcc-cCCeEEEEe-cceEEEEecCC--CceEEeEec--CCCceEEEEECCCCCEEEEeecCCeEEEEe--hhhccccc-
Confidence            5677 345677775 46899999877  432333333  388999999999999999999999999999  55554333 


Q ss_pred             EEEec-cCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEeeCCCeEEE
Q psy11529         95 LVLLR-INRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRV  173 (244)
Q Consensus        95 ~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~i~i  173 (244)
                       .+.. |...|-+++|+  +..+.+|+.++.|..+|++..+.   .......|...|..+.|++|++++|+|+.|+.+.|
T Consensus       254 -~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~---~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~I  327 (484)
T KOG0305|consen  254 -TLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQH---VVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFI  327 (484)
T ss_pred             -cccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchh---hhhhhhcccceeeeeEECCCCCeeccCCCccceEe
Confidence             3344 88999999998  56899999999999999999876   22247789999999999999999999999999999


Q ss_pred             EEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEec-CCCEEEEee--CCCcEEEEeCCCC
Q psy11529        174 FSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSK-DGNKLCWTS--HDGSINVRMSQQV  242 (244)
Q Consensus       174 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~--~dg~i~vwd~~~~  242 (244)
                      ||.                  ...++...+..|   ...|..++|+| ...+||+|+  .|+.|++||..+-
T Consensus       328 wd~------------------~~~~p~~~~~~H---~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g  378 (484)
T KOG0305|consen  328 WDG------------------LSPEPKFTFTEH---TAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTG  378 (484)
T ss_pred             ccC------------------CCccccEEEecc---ceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCC
Confidence            998                  567788888899   99999999999 555888875  6999999998753

>KOG0639|consensus

Probab=99.94  E-value=2.6e-25  Score=164.81  Aligned_cols=203  Identities=13%  Similarity=0.160  Sum_probs=168.5

Q ss_pred             CCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCCC
Q psy11529          9 INPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDD   88 (244)
Q Consensus         9 ~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~   88 (244)
                      ..-|+++.+.|||+.|++|++-.++.|||+..+..  .....+....-...+++.+||.+..+++..||.|.|||  +.+
T Consensus       465 dnyiRSckL~pdgrtLivGGeastlsiWDLAapTp--rikaeltssapaCyALa~spDakvcFsccsdGnI~vwD--Lhn  540 (705)
T KOG0639|consen  465 DNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTP--RIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWD--LHN  540 (705)
T ss_pred             ccceeeeEecCCCceEEeccccceeeeeeccCCCc--chhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEE--ccc
Confidence            56788999999999999999999999999987332  44445555556778899999999999999999999999  666


Q ss_pred             CCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCc-------------------e-----------E
Q psy11529         89 KKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDW-------------------W-----------V  138 (244)
Q Consensus        89 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-------------------~-----------~  138 (244)
                      ...  ...+.+|...+.||..+++|..|.+|+-|++|+-||++.+.+.                   |           .
T Consensus       541 q~~--VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vev  618 (705)
T KOG0639|consen  541 QTL--VRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEV  618 (705)
T ss_pred             cee--eecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEE
Confidence            553  4456799999999999999999999999999999999876541                   0           0


Q ss_pred             E------EeeecCCCCceeEEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCC
Q psy11529        139 A------KHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGW  212 (244)
Q Consensus       139 ~------~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (244)
                      .      +.....|.+.|.++.|.+-|+++++.+.|..+..|..                  .-+..+...+.    ...
T Consensus       619 lh~skp~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrt------------------PyGasiFqskE----~Ss  676 (705)
T KOG0639|consen  619 LHTSKPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRT------------------PYGASIFQSKE----SSS  676 (705)
T ss_pred             EecCCccceeecccccEEEEEEecccCceeeecCchhhhhhccC------------------ccccceeeccc----cCc
Confidence            0      1112335678899999999999999999999999988                  66777776666    788


Q ss_pred             eEEEEEecCCCEEEEeeCCCcEEEEeC
Q psy11529        213 IHSVAFSKDGNKLCWTSHDGSINVRMS  239 (244)
Q Consensus       213 v~~~~~s~~~~~l~~~~~dg~i~vwd~  239 (244)
                      |.++..|.|.+||+||+.|..-.||.+
T Consensus       677 VlsCDIS~ddkyIVTGSGdkkATVYeV  703 (705)
T KOG0639|consen  677 VLSCDISFDDKYIVTGSGDKKATVYEV  703 (705)
T ss_pred             ceeeeeccCceEEEecCCCcceEEEEE
Confidence            999999999999999999999888875

>KOG2048|consensus

Probab=99.93  E-value=3e-23  Score=158.41  Aligned_cols=211  Identities=17%  Similarity=0.271  Sum_probs=164.5

Q ss_pred             eeEEeCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccC-CCceEEEEeCCCCCeEEEEeCCccEEE
Q psy11529          3 EVYSFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGH-DLKVTGIDWAPNTNRIVTCSADRNAYV   81 (244)
Q Consensus         3 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~i   81 (244)
                      .++.+.+.+|.++|++.+.+.||.+-.+|.|-+|++..   .|-+...+.++ ...|.+++|++ +.+|++.+.+|.|.-
T Consensus        19 rf~d~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~---~w~~~~vi~g~~drsIE~L~W~e-~~RLFS~g~sg~i~E   94 (691)
T KOG2048|consen   19 RFVDYKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSN---NWFLEPVIHGPEDRSIESLAWAE-GGRLFSSGLSGSITE   94 (691)
T ss_pred             EEEeeeccceEEEEEeccCCceeeeccCCcEEEEccCC---CceeeEEEecCCCCceeeEEEcc-CCeEEeecCCceEEE
Confidence            34566799999999999999999999999999999986   35666677766 46899999995 667788889999999


Q ss_pred             EeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCE
Q psy11529         82 WTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHL  161 (244)
Q Consensus        82 wd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~  161 (244)
                      ||  +.+.+.  ........+.+++++.+|.+..++.|++||.+..++...+..  .....+...++.+.+++|+|++..
T Consensus        95 wD--l~~lk~--~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I--~~~r~l~rq~sRvLslsw~~~~~~  168 (691)
T KOG2048|consen   95 WD--LHTLKQ--KYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKI--TYKRSLMRQKSRVLSLSWNPTGTK  168 (691)
T ss_pred             Ee--cccCce--eEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceE--EEEeecccccceEEEEEecCCccE
Confidence            99  777764  344455678999999999999999999999777766666543  334444445689999999999999


Q ss_pred             EEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEe-----cCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEE
Q psy11529        162 LGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVEL-----NNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINV  236 (244)
Q Consensus       162 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v  236 (244)
                      |++|+.||.|++||.                  ..+..++..     ........-|.++.|-.++ .|++|.+.|+|.+
T Consensus       169 i~~Gs~Dg~Iriwd~------------------~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~F  229 (691)
T KOG2048|consen  169 IAGGSIDGVIRIWDV------------------KSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVTF  229 (691)
T ss_pred             EEecccCceEEEEEc------------------CCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCceEEE
Confidence            999999999999999                  444444411     1110003457778777565 6889999999999


Q ss_pred             EeCCCC
Q psy11529        237 RMSQQV  242 (244)
Q Consensus       237 wd~~~~  242 (244)
                      ||....
T Consensus       230 Wd~~~g  235 (691)
T KOG2048|consen  230 WDSIFG  235 (691)
T ss_pred             EcccCc
Confidence            997653

>KOG0307|consensus

Probab=99.93  E-value=9.8e-26  Score=180.80  Aligned_cols=209  Identities=18%  Similarity=0.242  Sum_probs=162.0

Q ss_pred             CCceEEEEEcCCCCe----EEEecCCCeEEEeeecc--CCCcceeeeeeccCCCceEEEEeCC-CCCeEEEEeCCccEEE
Q psy11529          9 INPVTTHAWNNTRQQ----LAFTPNNQEVHLYQYEK--AANDWSQLDVLDGHDLKVTGIDWAP-NTNRIVTCSADRNAYV   81 (244)
Q Consensus         9 ~~~v~~~~~~~~~~~----l~~~~~d~~v~v~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i   81 (244)
                      ..+-+.++|.+.|..    ||.|..||.|.+|+...  .......+.+...|++.|..+.|++ .++.||+|+.||.|.|
T Consensus        64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~i  143 (1049)
T KOG0307|consen   64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILI  143 (1049)
T ss_pred             cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEE
Confidence            356678999997775    88889999999999754  1234466778888999999999999 4559999999999999


Q ss_pred             EeeeCCCCCceeeEEEeccCcceEEEEECCC-CCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCC-
Q psy11529         82 WTQNNDDKKWKPTLVLLRINRAATCVKWSPL-ENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNN-  159 (244)
Q Consensus        82 wd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-  159 (244)
                      ||  +..-+.-...........|.+++|+.. ...|++++.+|++.|||++..+.  .......+....+..+.|+|++ 
T Consensus       144 WD--lnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~p--ii~ls~~~~~~~~S~l~WhP~~a  219 (1049)
T KOG0307|consen  144 WD--LNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKP--IIKLSDTPGRMHCSVLAWHPDHA  219 (1049)
T ss_pred             ec--cCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCc--ccccccCCCccceeeeeeCCCCc
Confidence            99  444332111111234678999999876 56788999999999999999865  2222223333568899999987 


Q ss_pred             CEEEEeeCCC---eEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCC-CEEEEeeCCCcEE
Q psy11529        160 HLLGCGSTDF---KVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDG-NKLCWTSHDGSIN  235 (244)
Q Consensus       160 ~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~  235 (244)
                      ..|+++++|.   .|.+||+|                 ....++..+.+|   ...|.++.|++.+ ++|++++.|+.|.
T Consensus       220 Tql~~As~dd~~PviqlWDlR-----------------~assP~k~~~~H---~~GilslsWc~~D~~lllSsgkD~~ii  279 (1049)
T KOG0307|consen  220 TQLLVASGDDSAPVIQLWDLR-----------------FASSPLKILEGH---QRGILSLSWCPQDPRLLLSSGKDNRII  279 (1049)
T ss_pred             eeeeeecCCCCCceeEeeccc-----------------ccCCchhhhccc---ccceeeeccCCCCchhhhcccCCCCee
Confidence            4666666553   69999997                 445677778888   8999999999955 8999999999999


Q ss_pred             EEeCCC
Q psy11529        236 VRMSQQ  241 (244)
Q Consensus       236 vwd~~~  241 (244)
                      +|+.++
T Consensus       280 ~wN~~t  285 (1049)
T KOG0307|consen  280 CWNPNT  285 (1049)
T ss_pred             EecCCC
Confidence            999987

>KOG1539|consensus

Probab=99.93  E-value=3.4e-24  Score=167.10  Aligned_cols=196  Identities=17%  Similarity=0.165  Sum_probs=171.3

Q ss_pred             CceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeee---ccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeC
Q psy11529         10 NPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVL---DGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNN   86 (244)
Q Consensus        10 ~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~   86 (244)
                      ..+++++.++-|+..+.|...|.|-+|++..  +  .....+   ..|+++|++++...-++.+++++.+|-+.+||  .
T Consensus       449 ~~~~av~vs~CGNF~~IG~S~G~Id~fNmQS--G--i~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~--f  522 (910)
T KOG1539|consen  449 INATAVCVSFCGNFVFIGYSKGTIDRFNMQS--G--IHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWD--F  522 (910)
T ss_pred             cceEEEEEeccCceEEEeccCCeEEEEEccc--C--eeecccccCccccCceeEEEecCCCceEEEccCcceEEEEe--c
Confidence            5789999999999999999999999999987  5  555566   47999999999999899999999999999999  6


Q ss_pred             CCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEee
Q psy11529         87 DDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGS  166 (244)
Q Consensus        87 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~  166 (244)
                      ..+..+...   .-...+.++.++.....++.+.+|-.|+++|..+.+.    ...+.+|...|++++|||||++|++++
T Consensus       523 ~~k~l~~~l---~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kv----vR~f~gh~nritd~~FS~DgrWlisas  595 (910)
T KOG1539|consen  523 KKKVLKKSL---RLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKV----VREFWGHGNRITDMTFSPDGRWLISAS  595 (910)
T ss_pred             CCcceeeee---ccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhh----hHHhhccccceeeeEeCCCCcEEEEee
Confidence            666533333   3456778888888888999999999999999988764    677788999999999999999999999


Q ss_pred             CCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCC-CcEEEEeCC
Q psy11529        167 TDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHD-GSINVRMSQ  240 (244)
Q Consensus       167 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-g~i~vwd~~  240 (244)
                      .|++|++||+                  .++.++..+..    ..++.++.|||+|.+||+...| .-|++|.=+
T Consensus       596 mD~tIr~wDl------------------pt~~lID~~~v----d~~~~sls~SPngD~LAT~Hvd~~gIylWsNk  648 (910)
T KOG1539|consen  596 MDSTIRTWDL------------------PTGTLIDGLLV----DSPCTSLSFSPNGDFLATVHVDQNGIYLWSNK  648 (910)
T ss_pred             cCCcEEEEec------------------cCcceeeeEec----CCcceeeEECCCCCEEEEEEecCceEEEEEch
Confidence            9999999999                  88999888877    7889999999999999999988 569999643

>KOG0301|consensus

Probab=99.93  E-value=6.2e-24  Score=162.60  Aligned_cols=192  Identities=14%  Similarity=0.153  Sum_probs=162.8

Q ss_pred             EeCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeee
Q psy11529          6 SFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQN   85 (244)
Q Consensus         6 ~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~   85 (244)
                      .-|+..|.|++...++. +++|+.|.++++|....      +...+.+|+..|++++.-|++ .+++|+.|.+|++|.  
T Consensus        98 kgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~------l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk--  167 (745)
T KOG0301|consen   98 KGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGE------LVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWK--  167 (745)
T ss_pred             hccccceeeeecCCcCc-eEecccccceEEecchh------hhcccCCcchheeeeeecCCC-cEEeccCcceeeecc--
Confidence            34688999999888887 89999999999999865      555699999999999999977 789999999999999  


Q ss_pred             CCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEe
Q psy11529         86 NDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCG  165 (244)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~  165 (244)
                      -  ++.  ...+.+|...|+.+++-+++ .+++|+.||.|+.|++..+     ......+|..-+.+++..+++..++++
T Consensus       168 ~--~~~--l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~~ge-----~l~~~~ghtn~vYsis~~~~~~~Ivs~  237 (745)
T KOG0301|consen  168 G--GTL--LKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDLDGE-----VLLEMHGHTNFVYSISMALSDGLIVST  237 (745)
T ss_pred             C--Cch--hhhhccchhheeeeEEecCC-CeEeecCCceEEEEeccCc-----eeeeeeccceEEEEEEecCCCCeEEEe
Confidence            3  443  33456899999999999874 6889999999999999444     356678899999999988888899999


Q ss_pred             eCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCC
Q psy11529        166 STDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQ  241 (244)
Q Consensus       166 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~  241 (244)
                      ++|+++++|+.                    .++.+.+..+   ...|.++.+-++|. |++|++||.|+||..+.
T Consensus       238 gEDrtlriW~~--------------------~e~~q~I~lP---ttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~k  289 (745)
T KOG0301|consen  238 GEDRTLRIWKK--------------------DECVQVITLP---TTSIWSAKVLLNGD-IVVGGSDGRVRVFTVDK  289 (745)
T ss_pred             cCCceEEEeec--------------------CceEEEEecC---ccceEEEEEeeCCC-EEEeccCceEEEEEecc
Confidence            99999999986                    4777777765   67899999998887 66788899999998764

>KOG0647|consensus

Probab=99.93  E-value=4e-24  Score=148.95  Aligned_cols=191  Identities=18%  Similarity=0.292  Sum_probs=150.4

Q ss_pred             CCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCC--CeEEEEeCCccEEEEeee
Q psy11529          8 GINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNT--NRIVTCSADRNAYVWTQN   85 (244)
Q Consensus         8 ~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~d~~i~iwd~~   85 (244)
                      +.++|.+++|+.||..+++|+.|+.+++||+..     .....+..|.++|..+.|-+..  ..|++|+.|.+|+.||. 
T Consensus        71 ~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S-----~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~-  144 (347)
T KOG0647|consen   71 HDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLAS-----GQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDT-  144 (347)
T ss_pred             cCCCeEEEEEccCCceEEeeccCCceEEEEccC-----CCeeeeeecccceeEEEEecCCCcceeEecccccceeeccc-
Confidence            589999999999999999999999999999988     4667778899999999998754  48999999999999994 


Q ss_pred             CCCCCceeeE----------------------------EEe-----------ccCcceEEEEECCCCCeEEEeeCCCeEE
Q psy11529         86 NDDKKWKPTL----------------------------VLL-----------RINRAATCVKWSPLENKFAAGSGARLIS  126 (244)
Q Consensus        86 ~~~~~~~~~~----------------------------~~~-----------~~~~~v~~~~~~~~~~~l~~~~~d~~i~  126 (244)
                       +.......+                            .+.           ..+-.++|++..++....+.|+-+|.+.
T Consensus       145 -R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~  223 (347)
T KOG0647|consen  145 -RSSNPVATLQLPERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVA  223 (347)
T ss_pred             -CCCCeeeeeeccceeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEE
Confidence             433222111                            110           1123678899999888889999999999


Q ss_pred             EEEeecCCCceEEEeeecCCC---------CceeEEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCcccccc
Q psy11529        127 VCYFESENDWWVAKHIKKPIK---------STITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLG  197 (244)
Q Consensus       127 i~d~~~~~~~~~~~~~~~~~~---------~~v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~  197 (244)
                      |..++...+.  ....+..|.         -.|++++|+|....|+|++.||+..+||-                  ...
T Consensus       224 iq~id~~~~~--~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDk------------------dar  283 (347)
T KOG0647|consen  224 IQYIDDPNPK--DNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDK------------------DAR  283 (347)
T ss_pred             EEecCCCCcc--CceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecc------------------hhh
Confidence            9999886331  122222222         25888999998889999999999999997                  445


Q ss_pred             ceeEEecCCCCCCCCeEEEEEecCCCEEEEe
Q psy11529        198 NCLVELNNSSSGGGWIHSVAFSKDGNKLCWT  228 (244)
Q Consensus       198 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~  228 (244)
                      ..+.+.+.|   ..+|++..|+.+|.+++-+
T Consensus       284 ~kLk~s~~~---~qpItcc~fn~~G~ifaYA  311 (347)
T KOG0647|consen  284 TKLKTSETH---PQPITCCSFNRNGSIFAYA  311 (347)
T ss_pred             hhhhccCcC---CCccceeEecCCCCEEEEE
Confidence            566667777   8999999999999977643

>KOG0270|consensus

Probab=99.93  E-value=2.7e-24  Score=156.70  Aligned_cols=207  Identities=18%  Similarity=0.237  Sum_probs=159.8

Q ss_pred             eCCCceEEEEEcCC-CCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCC-CCCeEEEEeCCccEEEEee
Q psy11529          7 FGINPVTTHAWNNT-RQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAP-NTNRIVTCSADRNAYVWTQ   84 (244)
Q Consensus         7 ~~~~~v~~~~~~~~-~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~   84 (244)
                      .|++.|.+++|+.. .+.||+|+.|.+|++||+..  +  ++..++..|...|.+++|+| ....|++|+.|+++.+.|.
T Consensus       241 gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~--g--~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~  316 (463)
T KOG0270|consen  241 GHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDT--G--KPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDC  316 (463)
T ss_pred             cchHHHHHHHhccccceeEEecCCCceEEEEEcCC--C--CcceehhhcCCceeEEEecCCCceEEEeccccceEEeeec
Confidence            35677888888875 45789999999999999988  6  77778888999999999999 6789999999999999994


Q ss_pred             eCCCCCceeeEEEeccCcceEEEEECCC-CCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCC-CEE
Q psy11529         85 NNDDKKWKPTLVLLRINRAATCVKWSPL-ENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNN-HLL  162 (244)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~l  162 (244)
                        +....  .-..-...+.|-.++|.|. ...+++++.||+++-+|++....   +......|.+.|.++++++.- .++
T Consensus       317 --R~~~~--s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~---~vwt~~AHd~~ISgl~~n~~~p~~l  389 (463)
T KOG0270|consen  317 --RDPSN--SGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGK---PVWTLKAHDDEISGLSVNIQTPGLL  389 (463)
T ss_pred             --cCccc--cCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCC---ceeEEEeccCCcceEEecCCCCcce
Confidence              42111  1111234688999999997 45678888999999999999864   566778899999999999854 589


Q ss_pred             EEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCC-EEEEeeCCCcEEEEeCCC
Q psy11529        163 GCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGN-KLCWTSHDGSINVRMSQQ  241 (244)
Q Consensus       163 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~vwd~~~  241 (244)
                      ++++.|+.+++|++...+                .+.+..-...   -+...|+++.|+-. +|+.|+..+.++|||+.+
T Consensus       390 ~t~s~d~~Vklw~~~~~~----------------~~~v~~~~~~---~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~  450 (463)
T KOG0270|consen  390 STASTDKVVKLWKFDVDS----------------PKSVKEHSFK---LGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFT  450 (463)
T ss_pred             eeccccceEEEEeecCCC----------------Cccccccccc---ccceeecccCCCcceEEEecCccceEEEeeccc
Confidence            999999999999984321                1122111111   34467788888655 677888888999999876


Q ss_pred             CC
Q psy11529        242 VL  243 (244)
Q Consensus       242 ~~  243 (244)
                      ..
T Consensus       451 ~~  452 (463)
T KOG0270|consen  451 NS  452 (463)
T ss_pred             Ch
Confidence            53

>KOG0270|consensus

Probab=99.93  E-value=2.9e-24  Score=156.52  Aligned_cols=206  Identities=16%  Similarity=0.243  Sum_probs=160.4

Q ss_pred             CceEEEEEcC-------CCCeEEEecCCCeEEEeeeccCCCcceeeee------------------eccCCCceEEEEeC
Q psy11529         10 NPVTTHAWNN-------TRQQLAFTPNNQEVHLYQYEKAANDWSQLDV------------------LDGHDLKVTGIDWA   64 (244)
Q Consensus        10 ~~v~~~~~~~-------~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~------------------~~~~~~~v~~~~~~   64 (244)
                      ..-.|++|..       .|+++|.|+.+..|.|||+.-- ....+..+                  -.+|+..|.+++|+
T Consensus       174 afPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~-d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n  252 (463)
T KOG0270|consen  174 AFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIV-DAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWN  252 (463)
T ss_pred             CcchhhhhhhcCCCCCCCcceEEEeccCceeEEeccccc-cccccceeechhhhhhhhhhcccccccccchHHHHHHHhc
Confidence            3335667643       3679999999999999997420 00011111                  23688899999998


Q ss_pred             CC-CCeEEEEeCCccEEEEeeeCCCCCceeeEEEeccCcceEEEEECCC-CCeEEEeeCCCeEEEEEeecCCCceEEEee
Q psy11529         65 PN-TNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPL-ENKFAAGSGARLISVCYFESENDWWVAKHI  142 (244)
Q Consensus        65 ~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~  142 (244)
                      .. .+.||+|+.|.+|++||  +.++++...  +..|...|.+++|+|. ...|++|+.|+++.+.|.+....    ...
T Consensus       253 ~~~~nVLaSgsaD~TV~lWD--~~~g~p~~s--~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~----s~~  324 (463)
T KOG0270|consen  253 RNFRNVLASGSADKTVKLWD--VDTGKPKSS--ITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSN----SGK  324 (463)
T ss_pred             cccceeEEecCCCceEEEEE--cCCCCccee--hhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccc----cCc
Confidence            84 56889999999999999  788885443  4578999999999996 67899999999999999996432    112


Q ss_pred             ecCCCCceeEEEecCCC-CEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecC
Q psy11529        143 KKPIKSTITCLDWHPNN-HLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKD  221 (244)
Q Consensus       143 ~~~~~~~v~~~~~~p~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  221 (244)
                      .-...+.|..++|.|.. ..+++++.||+++-+|+|                 ..++++.+++.|   ..+|+++++++.
T Consensus       325 ~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R-----------------~~~~~vwt~~AH---d~~ISgl~~n~~  384 (463)
T KOG0270|consen  325 EWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIR-----------------NPGKPVWTLKAH---DDEISGLSVNIQ  384 (463)
T ss_pred             eEEeccceEEEEecCCCceeEEEecCCceEEeeecC-----------------CCCCceeEEEec---cCCcceEEecCC
Confidence            22234789999999965 477788899999999997                 567999999999   999999999985


Q ss_pred             CC-EEEEeeCCCcEEEEeCCCCCC
Q psy11529        222 GN-KLCWTSHDGSINVRMSQQVLP  244 (244)
Q Consensus       222 ~~-~l~~~~~dg~i~vwd~~~~~p  244 (244)
                      -. +|++++.|+.|++|++..-.|
T Consensus       385 ~p~~l~t~s~d~~Vklw~~~~~~~  408 (463)
T KOG0270|consen  385 TPGLLSTASTDKVVKLWKFDVDSP  408 (463)
T ss_pred             CCcceeeccccceEEEEeecCCCC
Confidence            44 788999999999999875443

>KOG0639|consensus

Probab=99.93  E-value=1.3e-24  Score=161.23  Aligned_cols=221  Identities=14%  Similarity=0.117  Sum_probs=170.3

Q ss_pred             CCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeecc--CCCceEEEEeCCCCCeEEEEeCCccEEEEeee
Q psy11529          8 GINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDG--HDLKVTGIDWAPNTNRIVTCSADRNAYVWTQN   85 (244)
Q Consensus         8 ~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~   85 (244)
                      |.+-|.++.+|...+++.+|+. |-|+|||+..++. ..++..+..  ....|.++...|||+.|++|+.-.++.|||  
T Consensus       418 HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~-k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWD--  493 (705)
T KOG0639|consen  418 HGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGN-KSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWD--  493 (705)
T ss_pred             cCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCC-CCccccccccCcccceeeeEecCCCceEEeccccceeeeee--
Confidence            5778889999999999999975 7899999976432 133444433  367899999999999999999999999999  


Q ss_pred             CCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEe
Q psy11529         86 NDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCG  165 (244)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~  165 (244)
                      +..........+....-.++.++.+||.+..+++..||.|.|||+.+...    ...+.+|...+.|+..++||..|-+|
T Consensus       494 LAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~----VrqfqGhtDGascIdis~dGtklWTG  569 (705)
T KOG0639|consen  494 LAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTL----VRQFQGHTDGASCIDISKDGTKLWTG  569 (705)
T ss_pred             ccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEccccee----eecccCCCCCceeEEecCCCceeecC
Confidence            55444323333333445678899999999999999999999999999864    77788999999999999999999999


Q ss_pred             eCCCeEEEEEeeecccccCC------------CCCCCCc----------cccccceeEEecCCCCCCCCeEEEEEecCCC
Q psy11529        166 STDFKVRVFSAYIKDIESAP------------QSTNWGS----------KSTLGNCLVELNNSSSGGGWIHSVAFSKDGN  223 (244)
Q Consensus       166 ~~dg~i~i~d~~~~~~~~~~------------~~~~~~~----------~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  223 (244)
                      +-|.+|+.||+|.......-            ....|..          ...++...+.+..|   ...|.++.|++.|+
T Consensus       570 GlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~kyqlhlh---eScVLSlKFa~cGk  646 (705)
T KOG0639|consen  570 GLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQLHLH---ESCVLSLKFAYCGK  646 (705)
T ss_pred             CCccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEecCCccceeeccc---ccEEEEEEecccCc
Confidence            99999999999754321100            0011110          12223333445556   88899999999999


Q ss_pred             EEEEeeCCCcEEEEeC
Q psy11529        224 KLCWTSHDGSINVRMS  239 (244)
Q Consensus       224 ~l~~~~~dg~i~vwd~  239 (244)
                      ++++.+.|..+-.|..
T Consensus       647 wfvStGkDnlLnawrt  662 (705)
T KOG0639|consen  647 WFVSTGKDNLLNAWRT  662 (705)
T ss_pred             eeeecCchhhhhhccC
Confidence            9999999999988865

>KOG2055|consensus

Probab=99.93  E-value=2.9e-23  Score=152.18  Aligned_cols=225  Identities=12%  Similarity=0.145  Sum_probs=166.0

Q ss_pred             eCCCceEEEEEcCCCC-eEEEecCCCeEEEeeeccCCCcceeeeeeccCC-CceEEEEeCCCCCeEEEEeCCccEEEEee
Q psy11529          7 FGINPVTTHAWNNTRQ-QLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHD-LKVTGIDWAPNTNRIVTCSADRNAYVWTQ   84 (244)
Q Consensus         7 ~~~~~v~~~~~~~~~~-~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d~~i~iwd~   84 (244)
                      +...||.+.+|.|+|+ .+++++....++.||+..  .+...+....+++ ..+..+..+|++++|+..+..|.|.+.- 
T Consensus       255 l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~--ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLh-  331 (514)
T KOG2055|consen  255 LEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLET--AKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLH-  331 (514)
T ss_pred             eccCccceeeecCCCceEEEecccceEEEEeeccc--cccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeeh-
Confidence            3478999999999999 899999999999999987  5445555556654 4567888999999999999999999988 


Q ss_pred             eCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEE
Q psy11529         85 NNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGC  164 (244)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~  164 (244)
                       ..++++...+.   ..+.+..+.|+.+++.|++++.+|.|.+||++....   .........-.-++++.++++.+||+
T Consensus       332 -akT~eli~s~K---ieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~---~~rf~D~G~v~gts~~~S~ng~ylA~  404 (514)
T KOG2055|consen  332 -AKTKELITSFK---IEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSC---LHRFVDDGSVHGTSLCISLNGSYLAT  404 (514)
T ss_pred             -hhhhhhhheee---eccEEeeEEEecCCcEEEEEcCCceEEEEecCCcce---EEEEeecCccceeeeeecCCCceEEe
Confidence             77887655554   467899999999999999999999999999999854   22222222223456777899999999


Q ss_pred             eeCCCeEEEEEeeecccccCCCCCC-------------CCc-------------------cccccceeEEecCCCCCCCC
Q psy11529        165 GSTDFKVRVFSAYIKDIESAPQSTN-------------WGS-------------------KSTLGNCLVELNNSSSGGGW  212 (244)
Q Consensus       165 ~~~dg~i~i~d~~~~~~~~~~~~~~-------------~~~-------------------~~~~~~~~~~~~~~~~~~~~  212 (244)
                      |++.|.|.|||.........+.+..             +..                   ..+.......++.....-+.
T Consensus       405 GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~  484 (514)
T KOG2055|consen  405 GSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGH  484 (514)
T ss_pred             ccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccc
Confidence            9999999999975433222221100             000                   00111111122222111456


Q ss_pred             eEEEEEecCCCEEEEeeCCCcEEEEeCCC
Q psy11529        213 IHSVAFSKDGNKLCWTSHDGSINVRMSQQ  241 (244)
Q Consensus       213 v~~~~~s~~~~~l~~~~~dg~i~vwd~~~  241 (244)
                      ++|++|||.|.+||.|..+|.+.+|.+..
T Consensus       485 vtc~aFSP~sG~lAvGNe~grv~l~kL~h  513 (514)
T KOG2055|consen  485 VTCMAFSPNSGYLAVGNEAGRVHLFKLHH  513 (514)
T ss_pred             eEEEEecCCCceEEeecCCCceeeEeecc
Confidence            89999999999999999999999998864

>KOG0303|consensus

Probab=99.93  E-value=1.5e-23  Score=151.07  Aligned_cols=213  Identities=13%  Similarity=0.138  Sum_probs=164.9

Q ss_pred             eEEeCCCceEEEEEcC-CCCeEEEecCCCeEEEeeeccCC---CcceeeeeeccCCCceEEEEeCC-CCCeEEEEeCCcc
Q psy11529          4 VYSFGINPVTTHAWNN-TRQQLAFTPNNQEVHLYQYEKAA---NDWSQLDVLDGHDLKVTGIDWAP-NTNRIVTCSADRN   78 (244)
Q Consensus         4 ~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~v~~~~~~~---~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~   78 (244)
                      +...|+++|..++|+| +...||+|+.|.+|.||++...+   .-.+++..+.+|...|.-++|+| -.+.|++++.|.+
T Consensus        76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~  155 (472)
T KOG0303|consen   76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT  155 (472)
T ss_pred             CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence            4556799999999999 56689999999999999986521   11245778999999999999999 4568899999999


Q ss_pred             EEEEeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCC-CceeEEEecC
Q psy11529         79 AYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIK-STITCLDWHP  157 (244)
Q Consensus        79 i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~-~~v~~~~~~p  157 (244)
                      |.+|+  +.+++....   ..|+..|.++.|+-+|.+|++.+.|+.|+|||.++++.    .....+|. .....+.|-.
T Consensus       156 v~iWn--v~tgeali~---l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~----v~e~~~heG~k~~Raifl~  226 (472)
T KOG0303|consen  156 VSIWN--VGTGEALIT---LDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTV----VSEGVAHEGAKPARAIFLA  226 (472)
T ss_pred             EEEEe--ccCCceeee---cCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcE----eeecccccCCCcceeEEec
Confidence            99999  788874333   34999999999999999999999999999999999975    23334443 3566778888


Q ss_pred             CCCEEEEee---CCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEee-CCCc
Q psy11529        158 NNHLLGCGS---TDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTS-HDGS  233 (244)
Q Consensus       158 ~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~  233 (244)
                      +|.++.||.   .+.++-+||..+-+               ..-.+.++..    ...|.-.-|.+|...++.++ .|+.
T Consensus       227 ~g~i~tTGfsr~seRq~aLwdp~nl~---------------eP~~~~elDt----SnGvl~PFyD~dt~ivYl~GKGD~~  287 (472)
T KOG0303|consen  227 SGKIFTTGFSRMSERQIALWDPNNLE---------------EPIALQELDT----SNGVLLPFYDPDTSIVYLCGKGDSS  287 (472)
T ss_pred             cCceeeeccccccccceeccCccccc---------------CcceeEEecc----CCceEEeeecCCCCEEEEEecCCcc
Confidence            898666654   36789999974221               1223444554    56677777888888776555 6999


Q ss_pred             EEEEeCCCCCC
Q psy11529        234 INVRMSQQVLP  244 (244)
Q Consensus       234 i~vwd~~~~~p  244 (244)
                      |+.|.+.+-.|
T Consensus       288 IRYyEit~d~P  298 (472)
T KOG0303|consen  288 IRYFEITNEPP  298 (472)
T ss_pred             eEEEEecCCCc
Confidence            99999987654

>KOG2055|consensus

Probab=99.93  E-value=1.7e-23  Score=153.44  Aligned_cols=204  Identities=14%  Similarity=0.160  Sum_probs=164.9

Q ss_pred             CCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCC-eEEEEeCCccEEEEeeeCC
Q psy11529          9 INPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTN-RIVTCSADRNAYVWTQNND   87 (244)
Q Consensus         9 ~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~   87 (244)
                      .++|+++.|+|....+++++.|+.++||.+++  ..-..++.+.--..+|.+..|.|+|. .+++++....++.||  +.
T Consensus       213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDG--k~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyD--le  288 (514)
T KOG2055|consen  213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDG--KVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYD--LE  288 (514)
T ss_pred             cCCceEEEecCCCceEEEecCCCcEEEEEecC--ccChhheeeeeccCccceeeecCCCceEEEecccceEEEEee--cc
Confidence            68999999999999999999999999999987  32255666665688999999999998 889999999999999  77


Q ss_pred             CCCceeeEEEeccC-cceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEee
Q psy11529         88 DKKWKPTLVLLRIN-RAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGS  166 (244)
Q Consensus        88 ~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~  166 (244)
                      +.+......+.++. ..+.....+|++++|+..+..|.|.+.-..++..     .......+.+..++|+.|++.|+.++
T Consensus       289 ~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~el-----i~s~KieG~v~~~~fsSdsk~l~~~~  363 (514)
T KOG2055|consen  289 TAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKEL-----ITSFKIEGVVSDFTFSSDSKELLASG  363 (514)
T ss_pred             ccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhh-----hheeeeccEEeeEEEecCCcEEEEEc
Confidence            77655444433333 4577888999999999999999999976666653     11122357999999999999999999


Q ss_pred             CCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCC
Q psy11529        167 TDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQ  241 (244)
Q Consensus       167 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~  241 (244)
                      .+|.|.+||+                  ....++..+....  .-.-++++.|++|.|||+|+..|.|-|||.++
T Consensus       364 ~~GeV~v~nl------------------~~~~~~~rf~D~G--~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s  418 (514)
T KOG2055|consen  364 GTGEVYVWNL------------------RQNSCLHRFVDDG--SVHGTSLCISLNGSYLATGSDSGIVNIYDGNS  418 (514)
T ss_pred             CCceEEEEec------------------CCcceEEEEeecC--ccceeeeeecCCCceEEeccCcceEEEeccch
Confidence            9999999999                  4557777777631  22235677779999999999999999999764

>KOG0290|consensus

Probab=99.93  E-value=8.2e-24  Score=146.84  Aligned_cols=209  Identities=17%  Similarity=0.236  Sum_probs=162.6

Q ss_pred             CCCceEEEEEcCCCC-----eEEEecCCCeEEEeeeccCCCcceeeeeec-----cCCCceEEEEeCC-CCCeEEEEeCC
Q psy11529          8 GINPVTTHAWNNTRQ-----QLAFTPNNQEVHLYQYEKAANDWSQLDVLD-----GHDLKVTGIDWAP-NTNRIVTCSAD   76 (244)
Q Consensus         8 ~~~~v~~~~~~~~~~-----~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~-----~~~~~v~~~~~~~-~~~~l~~~~~d   76 (244)
                      |.-+++.+-|.|+..     +||+++  ..+++|.+..+..+..+...+.     .+.++++++.|+. +.+++.+++-|
T Consensus        95 ~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiD  172 (364)
T KOG0290|consen   95 HPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSID  172 (364)
T ss_pred             CCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeeccc
Confidence            367899999999763     566654  4899999874223333333332     3567999999998 78899999999


Q ss_pred             ccEEEEeeeCCCCC-ceeeEEEeccCcceEEEEECCCC-CeEEEeeCCCeEEEEEeecCCCceEEEeeecCC-CCceeEE
Q psy11529         77 RNAYVWTQNNDDKK-WKPTLVLLRINRAATCVKWSPLE-NKFAAGSGARLISVCYFESENDWWVAKHIKKPI-KSTITCL  153 (244)
Q Consensus        77 ~~i~iwd~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~-~~~v~~~  153 (244)
                      -++.|||  ++++. .....++..|...|..++|...+ +.+|+.+.||.+++||++....  .......+. ..+...+
T Consensus       173 TTCTiWd--ie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leH--STIIYE~p~~~~pLlRL  248 (364)
T KOG0290|consen  173 TTCTIWD--IETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEH--STIIYEDPSPSTPLLRL  248 (364)
T ss_pred             CeEEEEE--EeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEeccccc--ceEEecCCCCCCcceee
Confidence            9999999  56652 12244567899999999999864 5689999999999999998765  222223333 5688899


Q ss_pred             EecC-CCCEEEEeeCC-CeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecC-CCEEEEeeC
Q psy11529        154 DWHP-NNHLLGCGSTD-FKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKD-GNKLCWTSH  230 (244)
Q Consensus       154 ~~~p-~~~~l~~~~~d-g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~  230 (244)
                      +|++ |-+++|+-.+| ..|.|.|+|                 ....++..+++|   .+.|+.++|.|. ...|+++++
T Consensus       249 swnkqDpnymATf~~dS~~V~iLDiR-----------------~P~tpva~L~~H---~a~VNgIaWaPhS~~hictaGD  308 (364)
T KOG0290|consen  249 SWNKQDPNYMATFAMDSNKVVILDIR-----------------VPCTPVARLRNH---QASVNGIAWAPHSSSHICTAGD  308 (364)
T ss_pred             ccCcCCchHHhhhhcCCceEEEEEec-----------------CCCcceehhhcC---cccccceEecCCCCceeeecCC
Confidence            9998 45788887665 479999997                 557889999999   999999999995 458999999


Q ss_pred             CCcEEEEeCCCC
Q psy11529        231 DGSINVRMSQQV  242 (244)
Q Consensus       231 dg~i~vwd~~~~  242 (244)
                      |..+.+||+.++
T Consensus       309 D~qaliWDl~q~  320 (364)
T KOG0290|consen  309 DCQALIWDLQQM  320 (364)
T ss_pred             cceEEEEecccc
Confidence            999999999875

>KOG0301|consensus

Probab=99.92  E-value=8.6e-24  Score=161.83  Aligned_cols=191  Identities=14%  Similarity=0.213  Sum_probs=163.3

Q ss_pred             CCceEE-EEEcC-CCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeC
Q psy11529          9 INPVTT-HAWNN-TRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNN   86 (244)
Q Consensus         9 ~~~v~~-~~~~~-~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~   86 (244)
                      .+-|.+ +++-+ ++-++++|+.|+.+.+|.+.+  .  .+..++++|+..|.+++...++. +++|+.|.++++|.  .
T Consensus        57 ~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~--~--~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~--~  129 (745)
T KOG0301|consen   57 KGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQ--A--EPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWR--I  129 (745)
T ss_pred             cceeeccceeccccCcceEeecccceEEEEecCC--C--CchhhhhccccceeeeecCCcCc-eEecccccceEEec--c
Confidence            444444 66664 555699999999999999987  4  78999999999999999888777 99999999999999  3


Q ss_pred             CCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEee
Q psy11529         87 DDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGS  166 (244)
Q Consensus        87 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~  166 (244)
                      ..  +  ...+.+|+..|++++.-|++ .+++|+.|.+|++|.-.+      ....+.+|...|+.+++-|++ .+++++
T Consensus       130 ~~--l--~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~~~------~l~tf~gHtD~VRgL~vl~~~-~flScs  197 (745)
T KOG0301|consen  130 GE--L--VYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKGGT------LLKTFSGHTDCVRGLAVLDDS-HFLSCS  197 (745)
T ss_pred             hh--h--hcccCCcchheeeeeecCCC-cEEeccCcceeeeccCCc------hhhhhccchhheeeeEEecCC-CeEeec
Confidence            33  2  23367899999999999987 899999999999997532      356778899999999999886 567889


Q ss_pred             CCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCC
Q psy11529        167 TDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQ  240 (244)
Q Consensus       167 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~  240 (244)
                      +||.|++|++                   +++++.++.+|   ..-+.++...+++..++++++|++++||+..
T Consensus       198 NDg~Ir~w~~-------------------~ge~l~~~~gh---tn~vYsis~~~~~~~Ivs~gEDrtlriW~~~  249 (745)
T KOG0301|consen  198 NDGSIRLWDL-------------------DGEVLLEMHGH---TNFVYSISMALSDGLIVSTGEDRTLRIWKKD  249 (745)
T ss_pred             CCceEEEEec-------------------cCceeeeeecc---ceEEEEEEecCCCCeEEEecCCceEEEeecC
Confidence            9999999996                   68999999999   9999999988888899999999999999875

>KOG4378|consensus

Probab=99.92  E-value=5.6e-24  Score=157.55  Aligned_cols=199  Identities=15%  Similarity=0.172  Sum_probs=161.3

Q ss_pred             eEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCCCCCc
Q psy11529         12 VTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKW   91 (244)
Q Consensus        12 v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~   91 (244)
                      -.|++......++++|+..+.|+|||+..  .  .+.+.+++|+..|+++.++-...|||+++..|.|.|..  +.++..
T Consensus        82 ~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~--k--l~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~--~~t~~~  155 (673)
T KOG4378|consen   82 AFCVACASQSLYEISGGQSGCVKIWDLRA--K--LIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHG--TKTKQK  155 (673)
T ss_pred             HHHHhhhhcceeeeccCcCceeeehhhHH--H--HHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEe--cccCcc
Confidence            34555555557899999999999999986  3  56778899999999999999999999999999999999  666653


Q ss_pred             eeeEEEeccCcceEEEEECCCCCe-EEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCC-CEEEEeeCCC
Q psy11529         92 KPTLVLLRINRAATCVKWSPLENK-FAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNN-HLLGCGSTDF  169 (244)
Q Consensus        92 ~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~l~~~~~dg  169 (244)
                      ...+. ......++-+.|+|..+. |.+++.+|.|.+||+....+   .......|..+...++|+|.. .+|++.+.|.
T Consensus       156 tt~f~-~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp---~~~~~~~HsAP~~gicfspsne~l~vsVG~Dk  231 (673)
T KOG4378|consen  156 TTTFT-IDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSP---IFHASEAHSAPCRGICFSPSNEALLVSVGYDK  231 (673)
T ss_pred             cccee-cCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCc---ccchhhhccCCcCcceecCCccceEEEecccc
Confidence            33332 122445679999998655 66788999999999998876   455667788999999999955 5888999999


Q ss_pred             eEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCCC
Q psy11529        170 KVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQV  242 (244)
Q Consensus       170 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~  242 (244)
                      .|.+||.+                  ..+....+..    ..+.+.++|+++|.+|+.|...|.|..||++..
T Consensus       232 ki~~yD~~------------------s~~s~~~l~y----~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~  282 (673)
T KOG4378|consen  232 KINIYDIR------------------SQASTDRLTY----SHPLSTVAFSECGTYLCAGNSKGELIAYDMRST  282 (673)
T ss_pred             eEEEeecc------------------cccccceeee----cCCcceeeecCCceEEEeecCCceEEEEecccC
Confidence            99999994                  3333333433    678999999999999999999999999999865

>KOG2096|consensus

Probab=99.92  E-value=3.7e-23  Score=145.42  Aligned_cols=207  Identities=14%  Similarity=0.125  Sum_probs=157.6

Q ss_pred             EEeCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEee
Q psy11529          5 YSFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQ   84 (244)
Q Consensus         5 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~   84 (244)
                      +.-|.-.|-.+-...++.+|++++.|..|.+|++.+     +.+..+......-...+.||+|+++++++.-.-|++|.+
T Consensus       183 ~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lkG-----q~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~  257 (420)
T KOG2096|consen  183 ERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLKG-----QLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEP  257 (420)
T ss_pred             chhcccceEEEeecCCceEEEEecCCCcEEEEecCC-----ceeeeeccccccccceeeCCCCcEEEEecCCCCceEEEE
Confidence            334456677777778889999999999999999997     777777766666678899999999999999889999985


Q ss_pred             eC-CCCC---ceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCc----eEEE---eeecCCCCceeEE
Q psy11529         85 NN-DDKK---WKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDW----WVAK---HIKKPIKSTITCL  153 (244)
Q Consensus        85 ~~-~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~----~~~~---~~~~~~~~~v~~~  153 (244)
                      -. ++|+   ....+.+.+|.+.|..++|+|+...+++.+.||++++||.+..-..    +.++   .......+....+
T Consensus       258 ~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL  337 (420)
T KOG2096|consen  258 IFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRL  337 (420)
T ss_pred             EeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEE
Confidence            21 2232   3345778899999999999999999999999999999998654220    0111   1111123445589


Q ss_pred             EecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCc
Q psy11529        154 DWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGS  233 (244)
Q Consensus       154 ~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~  233 (244)
                      .++|.|+.|+.+. ...+++|..                  ..++...++..-|  ...|.+++|+++|+++++++ |..
T Consensus       338 ~lsP~g~~lA~s~-gs~l~~~~s------------------e~g~~~~~~e~~h--~~~Is~is~~~~g~~~atcG-dr~  395 (420)
T KOG2096|consen  338 ELSPSGDSLAVSF-GSDLKVFAS------------------EDGKDYPELEDIH--STTISSISYSSDGKYIATCG-DRY  395 (420)
T ss_pred             EeCCCCcEEEeec-CCceEEEEc------------------ccCccchhHHHhh--cCceeeEEecCCCcEEeeec-cee
Confidence            9999999888754 557999988                  4455555554333  88999999999999999997 667


Q ss_pred             EEEEe
Q psy11529        234 INVRM  238 (244)
Q Consensus       234 i~vwd  238 (244)
                      +++..
T Consensus       396 vrv~~  400 (420)
T KOG2096|consen  396 VRVIR  400 (420)
T ss_pred             eeeec
Confidence            77753

>KOG4283|consensus

Probab=99.92  E-value=3.2e-23  Score=144.33  Aligned_cols=220  Identities=13%  Similarity=0.154  Sum_probs=166.7

Q ss_pred             CCCceEEEEEcC-CCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCC---CCCeEEEEeCCccEEEEe
Q psy11529          8 GINPVTTHAWNN-TRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAP---NTNRIVTCSADRNAYVWT   83 (244)
Q Consensus         8 ~~~~v~~~~~~~-~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~d~~i~iwd   83 (244)
                      |+-.|.++.|-| |.-.+.+++.|.+++|||..+  .  +....++ .++.|.+-+++|   ...++|+|..+-.|++-|
T Consensus       100 Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnT--l--Q~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCD  174 (397)
T KOG4283|consen  100 HKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNT--L--QEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCD  174 (397)
T ss_pred             ceeeeeeeEEeeecCceeecccccceEEEeeccc--c--eeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEe
Confidence            567899999999 666888999999999999987  3  4555555 688899999998   345778888899999999


Q ss_pred             eeCCCCCceeeEEEeccCcceEEEEECCCCCe-EEEeeCCCeEEEEEeecCCC-ce----------EEEeeecCCCCcee
Q psy11529         84 QNNDDKKWKPTLVLLRINRAATCVKWSPLENK-FAAGSGARLISVCYFESEND-WW----------VAKHIKKPIKSTIT  151 (244)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~-~~----------~~~~~~~~~~~~v~  151 (244)
                        +..|.+  ...+.+|...|.++.|+|...+ |++|+.||.|++||++.... +.          ........|.+.++
T Consensus       175 --i~SGs~--sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvn  250 (397)
T KOG4283|consen  175 --IASGSF--SHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVN  250 (397)
T ss_pred             --ccCCcc--eeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceee
Confidence              788885  4555799999999999998665 88899999999999987632 10          11112345778999


Q ss_pred             EEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCc-----------------------------cccccceeEE
Q psy11529        152 CLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGS-----------------------------KSTLGNCLVE  202 (244)
Q Consensus       152 ~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-----------------------------~~~~~~~~~~  202 (244)
                      .++|..++.++++++.|.++++|+...++....+.......                             ..-.+..+..
T Consensus       251 gla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~~~~s~vfv~~p~~~~lall~~~sgs~ir~  330 (397)
T KOG4283|consen  251 GLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQSMDSDVFVLFPNDGSLALLNLLEGSFVRR  330 (397)
T ss_pred             eeeecccchhhhhccCccceEEeecccCcccccccccccccccccceEEEeecccceEEEEecCCeEEEEEccCceEEEe
Confidence            99999999999999999999999986543322111100000                             1223445556


Q ss_pred             ecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeC
Q psy11529        203 LNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMS  239 (244)
Q Consensus       203 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~  239 (244)
                      +..|   ...+.+.++-|+-+...+|..|+.|..|-.
T Consensus       331 l~~h---~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p  364 (397)
T KOG4283|consen  331 LSTH---LKRINCAAYRPDFEQCFTGDMNGNIYMWSP  364 (397)
T ss_pred             eecc---cceeeEEeecCchhhhhccccCCccccccc
Confidence            6666   777888888888888888888888888876

>KOG0642|consensus

Probab=99.92  E-value=1.1e-23  Score=157.76  Aligned_cols=212  Identities=17%  Similarity=0.186  Sum_probs=172.5

Q ss_pred             CCCceEEEEEcCCCCeEEEecCCCeEEEeeecc----CCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEe
Q psy11529          8 GINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEK----AANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWT   83 (244)
Q Consensus         8 ~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd   83 (244)
                      |.+.|++++|.|-...|++++.||.+.+|++..    .....+++.++++|.++|.|++..+++.++++|+.||+|+.|+
T Consensus       293 ~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~  372 (577)
T KOG0642|consen  293 HDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWN  372 (577)
T ss_pred             chhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeec
Confidence            467889999999989999999999999999932    2245678899999999999999999999999999999999997


Q ss_pred             eeCCCCC-------ceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCC--ceEEE--------------
Q psy11529         84 QNNDDKK-------WKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESEND--WWVAK--------------  140 (244)
Q Consensus        84 ~~~~~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~--~~~~~--------------  140 (244)
                      +- .+..       ....-.+.+|...++.+++|+....|++++.||+++.|+......  +....              
T Consensus       373 ~p-~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~  451 (577)
T KOG0642|consen  373 LP-PNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSR  451 (577)
T ss_pred             cC-CCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCccccCCccccCCcceEeeccch
Confidence            41 1111       012234568999999999999988999999999999999765443  00000              


Q ss_pred             ------------------------eee----cC---CCCceeEEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCC
Q psy11529        141 ------------------------HIK----KP---IKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTN  189 (244)
Q Consensus       141 ------------------------~~~----~~---~~~~v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  189 (244)
                                              ..+    .+   ....+..+.++|.+.+.+++..|+.|+++|.             
T Consensus       452 ~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn-------------  518 (577)
T KOG0642|consen  452 PAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDN-------------  518 (577)
T ss_pred             hHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccc-------------
Confidence                                    000    00   0135677889999999999999999999998             


Q ss_pred             CCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCC
Q psy11529        190 WGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQ  241 (244)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~  241 (244)
                           .++..++....|   ...++++++.|+|.+|++++.|+.+++|.+..
T Consensus       519 -----~~~~~l~s~~a~---~~svtslai~~ng~~l~s~s~d~sv~l~kld~  562 (577)
T KOG0642|consen  519 -----KTGKILHSMVAH---KDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDV  562 (577)
T ss_pred             -----cccccchheeec---cceecceeecCCCceEEeecCCceeehhhccc
Confidence                 788999999998   89999999999999999999999999998853

>KOG0771|consensus

Probab=99.92  E-value=1.9e-23  Score=151.49  Aligned_cols=200  Identities=17%  Similarity=0.182  Sum_probs=153.1

Q ss_pred             EEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCCCCCce
Q psy11529         13 TTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKWK   92 (244)
Q Consensus        13 ~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~   92 (244)
                      .+++|+++|..+++++.||.+|||+...  .  ..+.....|.+.|.++.|+|||+.|++.+.| ..+||+  .+++...
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps--~--~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~--~~~g~~~  220 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPS--M--LTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWS--VNTGAAL  220 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCc--c--hhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEE--eccCchh
Confidence            7899999999999999999999999765  2  5666777899999999999999999999999 999999  7888654


Q ss_pred             eeEEEeccCcceEEEEECCCC---Ce--EEEeeCCCeEEEEEeecCCCceE-EEeeecCCCCceeEEEecCCCCEEEEee
Q psy11529         93 PTLVLLRINRAATCVKWSPLE---NK--FAAGSGARLISVCYFESENDWWV-AKHIKKPIKSTITCLDWHPNNHLLGCGS  166 (244)
Q Consensus        93 ~~~~~~~~~~~v~~~~~~~~~---~~--l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~~~~~~v~~~~~~p~~~~l~~~~  166 (244)
                      ........+.....+.|+.++   .+  ++.....+.|+.|++.....-.. ...........|++++.+++|++++.|+
T Consensus       221 a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT  300 (398)
T KOG0771|consen  221 ARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGT  300 (398)
T ss_pred             hhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEec
Confidence            444434445567788898876   32  33334456677766654332000 1111122235899999999999999999


Q ss_pred             CCCeEEEEEeeecccccCCCCCCCCccccccceeEEec-CCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCC
Q psy11529        167 TDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELN-NSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQ  240 (244)
Q Consensus       167 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~  240 (244)
                      .||.|.|++.                  ...+.++-.+ .|   ...|+.+.|+||.+++++.+.|....|..+.
T Consensus       301 ~dGsVai~~~------------------~~lq~~~~vk~aH---~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~  354 (398)
T KOG0771|consen  301 MDGSVAIYDA------------------KSLQRLQYVKEAH---LGFVTGLTFSPDSRYLASVSSDNEAAVTKLA  354 (398)
T ss_pred             cCCcEEEEEe------------------ceeeeeEeehhhh---eeeeeeEEEcCCcCcccccccCCceeEEEEe
Confidence            9999999998                  4555555544 45   8899999999999999999988888876654

>KOG1007|consensus

Probab=99.92  E-value=2.1e-23  Score=144.81  Aligned_cols=212  Identities=18%  Similarity=0.305  Sum_probs=160.9

Q ss_pred             eeEEeCCCceEEEEEcCC-CCeEEEecCC-------CeEEEeeeccCCCc-----ceeeeeec-cCCCceEEEEeCCCCC
Q psy11529          3 EVYSFGINPVTTHAWNNT-RQQLAFTPNN-------QEVHLYQYEKAAND-----WSQLDVLD-GHDLKVTGIDWAPNTN   68 (244)
Q Consensus         3 ~~~~~~~~~v~~~~~~~~-~~~l~~~~~d-------~~v~v~~~~~~~~~-----~~~~~~~~-~~~~~v~~~~~~~~~~   68 (244)
                      +.+..+.+.|..++-+|- .+.|+++-.+       ....||.+..+-+.     ++++..+. .+-+.|.|+.|.|++.
T Consensus        57 kvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~  136 (370)
T KOG1007|consen   57 KVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSD  136 (370)
T ss_pred             hhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCC
Confidence            344456789999999995 4556665331       35789998663222     33444444 4556899999999999


Q ss_pred             eEEEEeCCccEEEEeeeCCCCCc-eeeEE---EeccCcceEEEEECC--CCCeEEEeeCCCeEEEEEeecCCCceEEEee
Q psy11529         69 RIVTCSADRNAYVWTQNNDDKKW-KPTLV---LLRINRAATCVKWSP--LENKFAAGSGARLISVCYFESENDWWVAKHI  142 (244)
Q Consensus        69 ~l~~~~~d~~i~iwd~~~~~~~~-~~~~~---~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~  142 (244)
                      .+++-. |..|.+|+  +..+.. .....   ...+....++-+|+|  +++.+++. .|+++..||+++.+.   ....
T Consensus       137 klasm~-dn~i~l~~--l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~---~~sI  209 (370)
T KOG1007|consen  137 KLASMD-DNNIVLWS--LDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKK---NNSI  209 (370)
T ss_pred             eeEEec-cCceEEEE--cccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEEEEEccchhh---hcch
Confidence            988765 88999999  444432 22211   122456788899999  47777764 578999999998875   4455


Q ss_pred             ecCCCCceeEEEecCCCC-EEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEec-
Q psy11529        143 KKPIKSTITCLDWHPNNH-LLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSK-  220 (244)
Q Consensus       143 ~~~~~~~v~~~~~~p~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-  220 (244)
                      ...|...+..+.|+|+.+ +|++|++||.|++||.|                 .+..++.++.+|   ...|.++.|+| 
T Consensus       210 ~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R-----------------~tk~pv~el~~H---sHWvW~VRfn~~  269 (370)
T KOG1007|consen  210 EDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTR-----------------KTKFPVQELPGH---SHWVWAVRFNPE  269 (370)
T ss_pred             hhhhcceeeeccCCCCceEEEEEcCCCccEEEEecc-----------------CCCccccccCCC---ceEEEEEEecCc
Confidence            677888999999999876 78899999999999997                 667889999999   99999999999 


Q ss_pred             CCCEEEEeeCCCcEEEEeCCC
Q psy11529        221 DGNKLCWTSHDGSINVRMSQQ  241 (244)
Q Consensus       221 ~~~~l~~~~~dg~i~vwd~~~  241 (244)
                      ..++|++|+.|..|.+|....
T Consensus       270 hdqLiLs~~SDs~V~Lsca~s  290 (370)
T KOG1007|consen  270 HDQLILSGGSDSAVNLSCASS  290 (370)
T ss_pred             cceEEEecCCCceeEEEeccc
Confidence            556889999999999998754

>KOG1274|consensus

Probab=99.91  E-value=8.4e-23  Score=160.86  Aligned_cols=191  Identities=20%  Similarity=0.292  Sum_probs=150.5

Q ss_pred             CCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCCC
Q psy11529          9 INPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDD   88 (244)
Q Consensus         9 ~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~   88 (244)
                      .-++++++++.+|+++|.|+.|-.|++-++.+  .  .....+++|+++|.++.|+|++++||+.+.||.|++||  +.+
T Consensus        96 tlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D--~--s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~--~~~  169 (933)
T KOG1274|consen   96 TLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDD--S--SQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWD--LQD  169 (933)
T ss_pred             eccceEEEEecCCcEEEeecCceeEEEEeccc--c--chheeecccCCceeeeeEcCCCCEEEEEecCceEEEEE--ccc
Confidence            56899999999999999999999999999977  4  67788999999999999999999999999999999999  777


Q ss_pred             CCceeeEEEe------ccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEE
Q psy11529         89 KKWKPTLVLL------RINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLL  162 (244)
Q Consensus        89 ~~~~~~~~~~------~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l  162 (244)
                      +.....+...      .....+..++|+|++..+++...|+.|++|+.......+...  ...+...+..+.|+|.|+||
T Consensus       170 ~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr--~~~~ss~~~~~~wsPnG~Yi  247 (933)
T KOG1274|consen  170 GILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLR--DKLSSSKFSDLQWSPNGKYI  247 (933)
T ss_pred             chhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeec--ccccccceEEEEEcCCCcEE
Confidence            7654333211      113456789999998888888999999999988776522222  22233459999999999999


Q ss_pred             EEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCC
Q psy11529        163 GCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDG  232 (244)
Q Consensus       163 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg  232 (244)
                      |+++.+|.|.|||..                  +-. .   ...   ...|.+++|.|++.-|-.-...|
T Consensus       248 AAs~~~g~I~vWnv~------------------t~~-~---~~~---~~~Vc~~aw~p~~n~it~~~~~g  292 (933)
T KOG1274|consen  248 AASTLDGQILVWNVD------------------THE-R---HEF---KRAVCCEAWKPNANAITLITALG  292 (933)
T ss_pred             eeeccCCcEEEEecc------------------cch-h---ccc---cceeEEEecCCCCCeeEEEeecc
Confidence            999999999999983                  211 1   111   56789999999887554333333

>KOG1063|consensus

Probab=99.91  E-value=4.2e-23  Score=158.14  Aligned_cols=219  Identities=18%  Similarity=0.236  Sum_probs=162.2

Q ss_pred             CCCceEEEEEcCCCCeEEEecC-----CCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEE
Q psy11529          8 GINPVTTHAWNNTRQQLAFTPN-----NQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVW   82 (244)
Q Consensus         8 ~~~~v~~~~~~~~~~~l~~~~~-----d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw   82 (244)
                      |.-.|++++.+|+|+++|++..     ...|++|+...    +.....+.+|.-.|+.++|||||++|++++.|+++.+|
T Consensus       524 HGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~----W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~  599 (764)
T KOG1063|consen  524 HGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTAN----WLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLY  599 (764)
T ss_pred             CceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccc----hhhhheecccceEEEEEEECCCCcEEEEeecCceEEee
Confidence            5789999999999999999854     34689999866    46777899999999999999999999999999999999


Q ss_pred             eeeCCCCCcee-eEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecC-C--
Q psy11529         83 TQNNDDKKWKP-TLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHP-N--  158 (244)
Q Consensus        83 d~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p-~--  158 (244)
                      .. .++..... ....+.|...|.++.|+|++.++++++.|++|++|........+........+...|+.+++.| +  
T Consensus       600 ~~-~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~  678 (764)
T KOG1063|consen  600 EV-QEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHN  678 (764)
T ss_pred             ee-ecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeeccccc
Confidence            94 12211111 1125678899999999999999999999999999998877432233334556678999999988 2  


Q ss_pred             --CCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCC----------CEEE
Q psy11529        159 --NHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDG----------NKLC  226 (244)
Q Consensus       159 --~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~----------~~l~  226 (244)
                        +..++.|-+.|.|.+|.....+ +.......     .....+.....|   ...|+.+.|.|..          ..|+
T Consensus       679 e~~~~vavGle~GeI~l~~~~~~~-~~~~~~~~-----~~~~~l~~~~~~---~~aV~rl~w~p~~~~~~~~~~~~l~la  749 (764)
T KOG1063|consen  679 EKGDVVAVGLEKGEIVLWRRKREH-RQVTVGTF-----NLDTRLCATIGP---DSAVNRLLWRPTCSDDWVEDKEWLNLA  749 (764)
T ss_pred             cccceEEEEecccEEEEEeccccc-ccccceee-----eeccccccccCh---HHhhheeEeccccccccccccceeEEe
Confidence              2378899999999999963221 00000000     000111122233   6789999999752          2579


Q ss_pred             EeeCCCcEEEEeCC
Q psy11529        227 WTSHDGSINVRMSQ  240 (244)
Q Consensus       227 ~~~~dg~i~vwd~~  240 (244)
                      +|++|.+++++++.
T Consensus       750 ~~g~D~~vri~nv~  763 (764)
T KOG1063|consen  750 VGGDDESVRIFNVD  763 (764)
T ss_pred             eecccceeEEeecc
Confidence            99999999999875

>KOG2919|consensus

Probab=99.91  E-value=1.1e-22  Score=143.21  Aligned_cols=207  Identities=15%  Similarity=0.241  Sum_probs=156.1

Q ss_pred             CCceEEEEEc-------CCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCC---ceEEEEeCCCCCeEEEEeCCcc
Q psy11529          9 INPVTTHAWN-------NTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDL---KVTGIDWAPNTNRIVTCSADRN   78 (244)
Q Consensus         9 ~~~v~~~~~~-------~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~~~~~d~~   78 (244)
                      ...|...+|-       |+..++|+.+.+.-|++||..+  ++.+....--.|..   +..+++|+|||.+|++| ..+.
T Consensus       104 g~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaft--G~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrc  180 (406)
T KOG2919|consen  104 GETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFT--GKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRC  180 (406)
T ss_pred             CCEEEEEEeeeccccCCCccceeeeccccCceeeeeccc--cccccchhhhhhHHhhhhheeEEecCCCCeEeec-ccce
Confidence            6778888886       6677999999999999999977  53333322222433   34689999999999876 5779


Q ss_pred             EEEEeeeCCCCCceeeEEEe-----ccCcceEEEEECCCC-CeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeE
Q psy11529         79 AYVWTQNNDDKKWKPTLVLL-----RINRAATCVKWSPLE-NKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITC  152 (244)
Q Consensus        79 i~iwd~~~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~  152 (244)
                      |+++|+ .+.+.........     +..+.+.+++|+|.. +.+++++...++-||......+    .....+|.+.|+.
T Consensus       181 irvFdt-~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~p----l~llggh~gGvTh  255 (406)
T KOG2919|consen  181 IRVFDT-SRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRP----LQLLGGHGGGVTH  255 (406)
T ss_pred             EEEeec-cCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCc----eeeecccCCCeee
Confidence            999995 2555433332222     235678999999974 5899999999999998887765    5566689999999


Q ss_pred             EEecCCCCEEEEeeC-CCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEE--EecCCCEEEEee
Q psy11529        153 LDWHPNNHLLGCGST-DFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVA--FSKDGNKLCWTS  229 (244)
Q Consensus       153 ~~~~p~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~s~~~~~l~~~~  229 (244)
                      +.|+++|+.|.+|.. +-.|..||+|                 ....++..+..|.  ...-..+.  ..|++++|++|+
T Consensus       256 L~~~edGn~lfsGaRk~dkIl~WDiR-----------------~~~~pv~~L~rhv--~~TNQRI~FDld~~~~~LasG~  316 (406)
T KOG2919|consen  256 LQWCEDGNKLFSGARKDDKILCWDIR-----------------YSRDPVYALERHV--GDTNQRILFDLDPKGEILASGD  316 (406)
T ss_pred             EEeccCcCeecccccCCCeEEEEeeh-----------------hccchhhhhhhhc--cCccceEEEecCCCCceeeccC
Confidence            999999999998875 6789999997                 4566677776662  21333444  457899999999


Q ss_pred             CCCcEEEEeCCCC
Q psy11529        230 HDGSINVRMSQQV  242 (244)
Q Consensus       230 ~dg~i~vwd~~~~  242 (244)
                      .||.|++||+++.
T Consensus       317 tdG~V~vwdlk~~  329 (406)
T KOG2919|consen  317 TDGSVRVWDLKDL  329 (406)
T ss_pred             CCccEEEEecCCC
Confidence            9999999999874

>KOG1034|consensus

Probab=99.91  E-value=8.5e-23  Score=143.96  Aligned_cols=209  Identities=15%  Similarity=0.201  Sum_probs=156.9

Q ss_pred             CCceEEEEEcCCC----CeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCC-CCCeEEEEeCCccEEEEe
Q psy11529          9 INPVTTHAWNNTR----QQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAP-NTNRIVTCSADRNAYVWT   83 (244)
Q Consensus         9 ~~~v~~~~~~~~~----~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd   83 (244)
                      ++....++|+-+-    .++|+|+.-|.|+|.|+..  +  +....+.+|...|+.+.+.| +.+++++++.|..|++|+
T Consensus        89 ~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~--~--~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwn  164 (385)
T KOG1034|consen   89 DESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVS--G--QCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWN  164 (385)
T ss_pred             CcceEEEEEEecCCCCCeeEEeecceeEEEEEecch--h--hhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEe
Confidence            5567778887643    3788888999999999977  5  78889999999999999999 557899999999999999


Q ss_pred             eeCCCCCceeeEE-EeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCC---------------------------
Q psy11529         84 QNNDDKKWKPTLV-LLRINRAATCVKWSPLENKFAAGSGARLISVCYFESEND---------------------------  135 (244)
Q Consensus        84 ~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~---------------------------  135 (244)
                        +++..++..+- ..+|...|.++.|+++|.++++++.|..+++|+++..+-                           
T Consensus       165 --I~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp  242 (385)
T KOG1034|consen  165 --IQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFP  242 (385)
T ss_pred             --ccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccc
Confidence              77877655442 346899999999999999999999999999999873211                           


Q ss_pred             --------------------------------ceEEEeeec------CC-------------CCcee--EEEecCCCCEE
Q psy11529        136 --------------------------------WWVAKHIKK------PI-------------KSTIT--CLDWHPNNHLL  162 (244)
Q Consensus       136 --------------------------------~~~~~~~~~------~~-------------~~~v~--~~~~~p~~~~l  162 (244)
                                                      .|.+.....      +.             ...+.  ..+|+|-+++|
T Consensus       243 ~fst~diHrnyVDCvrw~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~l  322 (385)
T KOG1034|consen  243 DFSTTDIHRNYVDCVRWFGDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKML  322 (385)
T ss_pred             cccccccccchHHHHHHHhhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHH
Confidence                                            000000000      00             11222  34556677899


Q ss_pred             EEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCC
Q psy11529        163 GCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQ  240 (244)
Q Consensus       163 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~  240 (244)
                      |.|.+.|.+.+||++..+..            ...+....     .....|+..+|+.||.+|+..++|++|.-||.-
T Consensus       323 a~gnq~g~v~vwdL~~~ep~------------~~ttl~~s-----~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv  383 (385)
T KOG1034|consen  323 ALGNQSGKVYVWDLDNNEPP------------KCTTLTHS-----KSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV  383 (385)
T ss_pred             hhccCCCcEEEEECCCCCCc------------cCceEEec-----cccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence            99999999999999654421            11111111     116789999999999999999999999999854

>KOG1009|consensus

Probab=99.91  E-value=1.6e-22  Score=146.07  Aligned_cols=163  Identities=18%  Similarity=0.326  Sum_probs=136.1

Q ss_pred             CCCceEEEEEcCCCC-eEEEecCCCeEEEeeeccC--CC---cceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEE
Q psy11529          8 GINPVTTHAWNNTRQ-QLAFTPNNQEVHLYQYEKA--AN---DWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYV   81 (244)
Q Consensus         8 ~~~~v~~~~~~~~~~-~l~~~~~d~~v~v~~~~~~--~~---~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i   81 (244)
                      ...+|..+.|.++.. .|++|+.|..|++|.+...  ++   ..+-...+..|..+|+++.|+|+|..|++|+++|.+.+
T Consensus        12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~l   91 (434)
T KOG1009|consen   12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFL   91 (434)
T ss_pred             CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEE
Confidence            478999999999776 9999999999999997541  11   33455678889999999999999999999999999999


Q ss_pred             EeeeCC--------------CCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCC
Q psy11529         82 WTQNND--------------DKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIK  147 (244)
Q Consensus        82 wd~~~~--------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~  147 (244)
                      |.  ..              ...+.......+|...+..++|+|++.++++++.|..+++||+..++.    ......|.
T Consensus        92 Wk--~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l----~~~~~dh~  165 (434)
T KOG1009|consen   92 WK--QGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQL----LAILDDHE  165 (434)
T ss_pred             EE--ecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEecccee----Eeeccccc
Confidence            98  33              122344455567889999999999999999999999999999999874    67778888


Q ss_pred             CceeEEEecCCCCEEEEeeCCCeEEEEEe
Q psy11529        148 STITCLDWHPNNHLLGCGSTDFKVRVFSA  176 (244)
Q Consensus       148 ~~v~~~~~~p~~~~l~~~~~dg~i~i~d~  176 (244)
                      ..+..++|.|-++++++-+.|...+.+++
T Consensus       166 ~yvqgvawDpl~qyv~s~s~dr~~~~~~~  194 (434)
T KOG1009|consen  166 HYVQGVAWDPLNQYVASKSSDRHPEGFSA  194 (434)
T ss_pred             cccceeecchhhhhhhhhccCcccceeee
Confidence            89999999999999888887776665554

>KOG2048|consensus

Probab=99.91  E-value=8e-22  Score=150.75  Aligned_cols=204  Identities=13%  Similarity=0.155  Sum_probs=169.0

Q ss_pred             CCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCCC
Q psy11529          9 INPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDD   88 (244)
Q Consensus         9 ~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~   88 (244)
                      .+.|.+++|++.+ .|.+.+.+|.|.-||+.+  .  ++...+....+.|++++.+|.+..++.|++||.+..++  ...
T Consensus        69 drsIE~L~W~e~~-RLFS~g~sg~i~EwDl~~--l--k~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s--~~p  141 (691)
T KOG2048|consen   69 DRSIESLAWAEGG-RLFSSGLSGSITEWDLHT--L--KQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFS--IGP  141 (691)
T ss_pred             CCceeeEEEccCC-eEEeecCCceEEEEeccc--C--ceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEe--cCC
Confidence            6889999999655 555667789999999987  4  77778888889999999999999999999999777777  677


Q ss_pred             CCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecC----CCCceeEEEecCCCCEEEE
Q psy11529         89 KKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKP----IKSTITCLDWHPNNHLLGC  164 (244)
Q Consensus        89 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~----~~~~v~~~~~~p~~~~l~~  164 (244)
                      +.......+....+.+.++.|+|++..++.|+.||.|++||...++...........    ...-|.++.|-.++ .|++
T Consensus       142 ~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~s  220 (691)
T KOG2048|consen  142 DKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIAS  220 (691)
T ss_pred             ceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEE
Confidence            776666666677899999999999999999999999999999988763211111111    22346777777565 7899


Q ss_pred             eeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCC
Q psy11529        165 GSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQ  241 (244)
Q Consensus       165 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~  241 (244)
                      |..-|+|.+||.                  ..+.++..+..|   ...|.+++.++++.++++++.|+.|.-+...+
T Consensus       221 gDS~G~V~FWd~------------------~~gTLiqS~~~h---~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~  276 (691)
T KOG2048|consen  221 GDSAGTVTFWDS------------------IFGTLIQSHSCH---DADVLALAVADNEDRVFSAGVDPKIIQYSLTT  276 (691)
T ss_pred             ecCCceEEEEcc------------------cCcchhhhhhhh---hcceeEEEEcCCCCeEEEccCCCceEEEEecC
Confidence            999999999998                  778889999988   99999999999999999999999998887654

>KOG1036|consensus

Probab=99.91  E-value=2.2e-22  Score=140.67  Aligned_cols=194  Identities=17%  Similarity=0.205  Sum_probs=150.0

Q ss_pred             eCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeC
Q psy11529          7 FGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNN   86 (244)
Q Consensus         7 ~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~   86 (244)
                      -|..+|.|+.+++....+++|+.|++|++||...  .  .....+. ....|.++..+  ++.|+.|+.+..+.+||  +
T Consensus        92 th~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~--~--~~~~~~d-~~kkVy~~~v~--g~~LvVg~~~r~v~iyD--L  162 (323)
T KOG1036|consen   92 THDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRN--K--VVVGTFD-QGKKVYCMDVS--GNRLVVGTSDRKVLIYD--L  162 (323)
T ss_pred             cCCCceEEEEeeccCCeEEEcccCccEEEEeccc--c--ccccccc-cCceEEEEecc--CCEEEEeecCceEEEEE--c
Confidence            4689999999999888999999999999999976  2  3444454 34588887765  77899999999999999  5


Q ss_pred             CCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCC---------CceeEEEecC
Q psy11529         87 DDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIK---------STITCLDWHP  157 (244)
Q Consensus        87 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~---------~~v~~~~~~p  157 (244)
                      ++............+-.++|+++-|++.-+++++-||.|.+=.++........+..+..|.         -+|++++|+|
T Consensus       163 Rn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp  242 (323)
T KOG1036|consen  163 RNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHP  242 (323)
T ss_pred             ccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEecc
Confidence            5544322222334567789999999988899999999999877766522111222222221         3799999999


Q ss_pred             CCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeC
Q psy11529        158 NNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSH  230 (244)
Q Consensus       158 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~  230 (244)
                      -.+.||||+.||.|.+||+                  ...+.+..+..-   ...|.+++|+.||..||.++.
T Consensus       243 ~~~tfaTgGsDG~V~~Wd~------------------~~rKrl~q~~~~---~~SI~slsfs~dG~~LAia~s  294 (323)
T KOG1036|consen  243 IHGTFATGGSDGIVNIWDL------------------FNRKRLKQLAKY---ETSISSLSFSMDGSLLAIASS  294 (323)
T ss_pred             ccceEEecCCCceEEEccC------------------cchhhhhhccCC---CCceEEEEeccCCCeEEEEec
Confidence            9889999999999999999                  566667767664   677999999999999998864

>KOG1007|consensus

Probab=99.91  E-value=4e-22  Score=138.45  Aligned_cols=221  Identities=13%  Similarity=0.181  Sum_probs=161.4

Q ss_pred             CCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeec-----cCCCceEEEEeCC--CCCeEEEEeCCccEEE
Q psy11529          9 INPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLD-----GHDLKVTGIDWAP--NTNRIVTCSADRNAYV   81 (244)
Q Consensus         9 ~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~-----~~~~~v~~~~~~~--~~~~l~~~~~d~~i~i   81 (244)
                      -+.|.|+.|.|++..+++-. |..|.+|++....   +....+.     ++....++-+|+|  +++.+++.+ |+++..
T Consensus       123 vg~i~cvew~Pns~klasm~-dn~i~l~~l~ess---~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~-d~tl~~  197 (370)
T KOG1007|consen  123 VGKINCVEWEPNSDKLASMD-DNNIVLWSLDESS---KIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS-DSTLQF  197 (370)
T ss_pred             hCceeeEEEcCCCCeeEEec-cCceEEEEcccCc---chheeecccccccccceecccccCCCCccceEEEeC-CCcEEE
Confidence            36899999999999998775 7899999997621   2122222     2456678889999  788887764 889999


Q ss_pred             EeeeCCCCCceeeEEEeccCcceEEEEECCCCC-eEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCC-C
Q psy11529         82 WTQNNDDKKWKPTLVLLRINRAATCVKWSPLEN-KFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPN-N  159 (244)
Q Consensus        82 wd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~-~  159 (244)
                      ||  .++.+....+. ..|...++.+.|+|+.+ +|++|++|+.|+|||.+..+.   +.....+|...+.++.|+|. .
T Consensus       198 ~D--~RT~~~~~sI~-dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~---pv~el~~HsHWvW~VRfn~~hd  271 (370)
T KOG1007|consen  198 WD--LRTMKKNNSIE-DAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKF---PVQELPGHSHWVWAVRFNPEHD  271 (370)
T ss_pred             EE--ccchhhhcchh-hhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCc---cccccCCCceEEEEEEecCccc
Confidence            99  55554333332 45778899999999854 588999999999999998875   66777889999999999994 4


Q ss_pred             CEEEEeeCCCeEEEEEeeecccccCC------CCCCCC-----ccccccceeEEecCCCCCCCCeEEEEEecCCC-EEEE
Q psy11529        160 HLLGCGSTDFKVRVFSAYIKDIESAP------QSTNWG-----SKSTLGNCLVELNNSSSGGGWIHSVAFSKDGN-KLCW  227 (244)
Q Consensus       160 ~~l~~~~~dg~i~i~d~~~~~~~~~~------~~~~~~-----~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~  227 (244)
                      ++|++|+.|..|.+|....-..+..-      ......     .+.-....+.++..|   ...|++++||.-.. .+|+
T Consensus       272 qLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydeh---EDSVY~~aWSsadPWiFAS  348 (370)
T KOG1007|consen  272 QLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEH---EDSVYALAWSSADPWIFAS  348 (370)
T ss_pred             eEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhccccccccccccccc---ccceEEEeeccCCCeeEEE
Confidence            68899999999999987432211100      000000     011122345677788   99999999998655 5667


Q ss_pred             eeCCCcEEEEeCCCCC
Q psy11529        228 TSHDGSINVRMSQQVL  243 (244)
Q Consensus       228 ~~~dg~i~vwd~~~~~  243 (244)
                      -+.||.+.|=.+..+.
T Consensus       349 LSYDGRviIs~V~r~~  364 (370)
T KOG1007|consen  349 LSYDGRVIISSVPRFL  364 (370)
T ss_pred             eccCceEEeecCChhh
Confidence            7899999998877654

>KOG0307|consensus

Probab=99.91  E-value=1.5e-23  Score=168.42  Aligned_cols=208  Identities=19%  Similarity=0.289  Sum_probs=165.4

Q ss_pred             EEeCCCceEEEEEcCCCC-eEEEecCCCeEEEeeeccCCCcceeeeee--ccCCCceEEEEeCC-CCCeEEEEeCCccEE
Q psy11529          5 YSFGINPVTTHAWNNTRQ-QLAFTPNNQEVHLYQYEKAANDWSQLDVL--DGHDLKVTGIDWAP-NTNRIVTCSADRNAY   80 (244)
Q Consensus         5 ~~~~~~~v~~~~~~~~~~-~l~~~~~d~~v~v~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~   80 (244)
                      +.-|.+.|..+.|++... +||+|+.+|.|.|||+....    ...++  ....+.|.+++|+. ....|++++.+|++.
T Consensus       112 ~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~----tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~  187 (1049)
T KOG0307|consen  112 KSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPE----TPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAV  187 (1049)
T ss_pred             hcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcC----CCCCCCCCCCcccceEeccchhhhHHhhccCCCCCce
Confidence            345789999999999655 99999999999999997732    22222  22467899999998 456788999999999


Q ss_pred             EEeeeCCCCCceeeEEEeccCcceEEEEECCCC-CeEEEeeCCC---eEEEEEeecCCCceEEEeeecCCCCceeEEEec
Q psy11529         81 VWTQNNDDKKWKPTLVLLRINRAATCVKWSPLE-NKFAAGSGAR---LISVCYFESENDWWVAKHIKKPIKSTITCLDWH  156 (244)
Q Consensus        81 iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~---~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~  156 (244)
                      |||  ++..+.+..+........+..++|+|+. ..++++++|.   .|.+||++....   .......|...|.++.|+
T Consensus       188 iWD--lr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~ass---P~k~~~~H~~GilslsWc  262 (1049)
T KOG0307|consen  188 IWD--LRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASS---PLKILEGHQRGILSLSWC  262 (1049)
T ss_pred             ecc--ccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCC---chhhhcccccceeeeccC
Confidence            999  5555433333322333568899999984 4566766644   699999988764   556668899999999999


Q ss_pred             CCC-CEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCC-EEEEeeCCCcE
Q psy11529        157 PNN-HLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGN-KLCWTSHDGSI  234 (244)
Q Consensus       157 p~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i  234 (244)
                      +.+ .++++++.|++|.+|+.                  .+++.+.++...   ..++..+.|+|... .++.++-||.|
T Consensus       263 ~~D~~lllSsgkD~~ii~wN~------------------~tgEvl~~~p~~---~nW~fdv~w~pr~P~~~A~asfdgkI  321 (1049)
T KOG0307|consen  263 PQDPRLLLSSGKDNRIICWNP------------------NTGEVLGELPAQ---GNWCFDVQWCPRNPSVMAAASFDGKI  321 (1049)
T ss_pred             CCCchhhhcccCCCCeeEecC------------------CCceEeeecCCC---CcceeeeeecCCCcchhhhheeccce
Confidence            965 89999999999999999                  778899999886   89999999999665 78888999999


Q ss_pred             EEEeCCCC
Q psy11529        235 NVRMSQQV  242 (244)
Q Consensus       235 ~vwd~~~~  242 (244)
                      .|+.+...
T Consensus       322 ~I~sl~~~  329 (1049)
T KOG0307|consen  322 SIYSLQGT  329 (1049)
T ss_pred             eeeeeecC
Confidence            99998753

>KOG2106|consensus

Probab=99.91  E-value=4.4e-21  Score=142.50  Aligned_cols=216  Identities=17%  Similarity=0.166  Sum_probs=163.4

Q ss_pred             EeCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeee
Q psy11529          6 SFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQN   85 (244)
Q Consensus         6 ~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~   85 (244)
                      ..|.+....++.+|+..++++++.|+.+++|+ +.     +++.+.. -..++.|+.|+|.| .++.|+..|...+.|  
T Consensus       365 ~gh~delwgla~hps~~q~~T~gqdk~v~lW~-~~-----k~~wt~~-~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d--  434 (626)
T KOG2106|consen  365 QGHGDELWGLATHPSKNQLLTCGQDKHVRLWN-DH-----KLEWTKI-IEDPAECADFHPSG-VVAVGTATGRWFVLD--  434 (626)
T ss_pred             EecccceeeEEcCCChhheeeccCcceEEEcc-CC-----ceeEEEE-ecCceeEeeccCcc-eEEEeeccceEEEEe--
Confidence            34577899999999999999999999999999 33     4444433 46788999999999 999999999999999  


Q ss_pred             CCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEe
Q psy11529         86 NDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCG  165 (244)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~  165 (244)
                      .++....   .+.....++++++|+|+|.+||.|+.|+.|+||.+......+.......  .++|+.++|++|++++.+-
T Consensus       435 ~e~~~lv---~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~--gs~ithLDwS~Ds~~~~~~  509 (626)
T KOG2106|consen  435 TETQDLV---TIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCS--GSPITHLDWSSDSQFLVSN  509 (626)
T ss_pred             cccceeE---EEEecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeec--CceeEEeeecCCCceEEec
Confidence            6775533   3333488999999999999999999999999999988876333333333  3899999999999999999


Q ss_pred             eCCCeEEEEEeeecccccCCCCCCCCc---------------------------------------------ccccccee
Q psy11529        166 STDFKVRVFSAYIKDIESAPQSTNWGS---------------------------------------------KSTLGNCL  200 (244)
Q Consensus       166 ~~dg~i~i~d~~~~~~~~~~~~~~~~~---------------------------------------------~~~~~~~~  200 (244)
                      +-|-.|..|.........+.....|..                                             ........
T Consensus       510 S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~  589 (626)
T KOG2106|consen  510 SGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPS  589 (626)
T ss_pred             cCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccc
Confidence            999999999542111100000000000                                             11222334


Q ss_pred             EEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeC
Q psy11529        201 VELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMS  239 (244)
Q Consensus       201 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~  239 (244)
                      .++.+|   ...|.+++|.-+...|++.+.|.+|..|++
T Consensus       590 he~~gh---s~~vt~V~Fl~~d~~li~tg~D~Si~qW~l  625 (626)
T KOG2106|consen  590 HEYGGH---SSHVTNVAFLCKDSHLISTGKDTSIMQWRL  625 (626)
T ss_pred             eeeccc---cceeEEEEEeeCCceEEecCCCceEEEEEe
Confidence            556677   889999999987777777779999999986

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.90  E-value=9e-21  Score=141.60  Aligned_cols=201  Identities=13%  Similarity=0.068  Sum_probs=141.0

Q ss_pred             ceEEEEEcCCCCeEEEe-cCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCc-cEEEEeeeCCC
Q psy11529         11 PVTTHAWNNTRQQLAFT-PNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADR-NAYVWTQNNDD   88 (244)
Q Consensus        11 ~v~~~~~~~~~~~l~~~-~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-~i~iwd~~~~~   88 (244)
                      .+..++|+|+++.++++ +.++.+++||+.+  .  +.+..+. +...+.+++|+|+++++++++.++ .+.+||  ..+
T Consensus        74 ~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~--~--~~~~~~~-~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d--~~~  146 (300)
T TIGR03866        74 DPELFALHPNGKILYIANEDDNLVTVIDIET--R--KVLAEIP-VGVEPEGMAVSPDGKIVVNTSETTNMAHFID--TKT  146 (300)
T ss_pred             CccEEEECCCCCEEEEEcCCCCeEEEEECCC--C--eEEeEee-CCCCcceEEECCCCCEEEEEecCCCeEEEEe--CCC
Confidence            45678999999977654 5689999999977  3  4455554 334568899999999999888765 466778  666


Q ss_pred             CCceeeEEEeccCcceEEEEECCCCCeEEEee-CCCeEEEEEeecCCCceEEEeeec---CCCCceeEEEecCCCCEEEE
Q psy11529         89 KKWKPTLVLLRINRAATCVKWSPLENKFAAGS-GARLISVCYFESENDWWVAKHIKK---PIKSTITCLDWHPNNHLLGC  164 (244)
Q Consensus        89 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~---~~~~~v~~~~~~p~~~~l~~  164 (244)
                      ++.....   ........++|+|++++|++++ .++.+++||+++.+..........   ........++|+|+++++++
T Consensus       147 ~~~~~~~---~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~  223 (300)
T TIGR03866       147 YEIVDNV---LVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFV  223 (300)
T ss_pred             CeEEEEE---EcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEE
Confidence            5532222   1234567899999999886554 589999999988754111111100   01123456889999997554


Q ss_pred             -eeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEe-eCCCcEEEEeCCCC
Q psy11529        165 -GSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWT-SHDGSINVRMSQQV  242 (244)
Q Consensus       165 -~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~vwd~~~~  242 (244)
                       ...++.+.+||+                  .+++....+..    ...+.+++|+|+|++|+++ +.+|.|.+||+++.
T Consensus       224 ~~~~~~~i~v~d~------------------~~~~~~~~~~~----~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~  281 (300)
T TIGR03866       224 ALGPANRVAVVDA------------------KTYEVLDYLLV----GQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAAL  281 (300)
T ss_pred             EcCCCCeEEEEEC------------------CCCcEEEEEEe----CCCcceEEECCCCCEEEEEcCCCCeEEEEECCCC
Confidence             345678999998                  44555544432    4578899999999999876 46899999999875


Q ss_pred             C
Q psy11529        243 L  243 (244)
Q Consensus       243 ~  243 (244)
                      .
T Consensus       282 ~  282 (300)
T TIGR03866       282 K  282 (300)
T ss_pred             c
Confidence            3

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0321|consensus

Probab=99.90  E-value=3.1e-22  Score=152.22  Aligned_cols=218  Identities=12%  Similarity=0.081  Sum_probs=152.6

Q ss_pred             EeCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCC-CCCeEEEEeCCccEEEEee
Q psy11529          6 SFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAP-NTNRIVTCSADRNAYVWTQ   84 (244)
Q Consensus         6 ~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~   84 (244)
                      ..|.+.|..+.|-|-...|++++.|.++++||+.+  ....-...+.+|.+.|.+++|.| +...|++|+.||.|.|||+
T Consensus        97 ~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~--s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~  174 (720)
T KOG0321|consen   97 LAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKT--SRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDC  174 (720)
T ss_pred             ccccceeEeeccCCCceeEEEccCCceeeeeeecc--ceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEE
Confidence            35789999999999666889999999999999988  52233334889999999999999 5668899999999999997


Q ss_pred             eCCCCCc----------------ee-------eEEEeccCcceEE---EEECCCCCeEEEeeC-CCeEEEEEeecCCCce
Q psy11529         85 NNDDKKW----------------KP-------TLVLLRINRAATC---VKWSPLENKFAAGSG-ARLISVCYFESENDWW  137 (244)
Q Consensus        85 ~~~~~~~----------------~~-------~~~~~~~~~~v~~---~~~~~~~~~l~~~~~-d~~i~i~d~~~~~~~~  137 (244)
                      +......                .+       ......+...+.+   +.+..|...||+++. |+.|+|||++.....+
T Consensus       175 R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~  254 (720)
T KOG0321|consen  175 RCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAY  254 (720)
T ss_pred             eccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeeccccccc
Confidence            5322000                00       0011123334444   556667888999888 9999999999875421


Q ss_pred             EEE----eeecCC---CCceeEEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCC
Q psy11529        138 VAK----HIKKPI---KSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGG  210 (244)
Q Consensus       138 ~~~----~~~~~~---~~~v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (244)
                      ...    .....+   .-.+.++.....|.+|.+.+.|+.|+.|+++...                ..++..+.++....
T Consensus       255 r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s----------------~sP~~~~sg~~~~s  318 (720)
T KOG0321|consen  255 RQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLS----------------ISPVAEFSGKLNSS  318 (720)
T ss_pred             ccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccC----------------cCchhhccCcccce
Confidence            110    011111   2467788888888988888889999999996432                22333343331101


Q ss_pred             CCeEEEEEecCCCEEEEeeCCCcEEEEeCCCC
Q psy11529        211 GWIHSVAFSKDGNKLCWTSHDGSINVRMSQQV  242 (244)
Q Consensus       211 ~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~  242 (244)
                      ..+ .-..+||+.+|++|+.|...++|.+.+.
T Consensus       319 f~v-ks~lSpd~~~l~SgSsd~~ayiw~vs~~  349 (720)
T KOG0321|consen  319 FYV-KSELSPDDCSLLSGSSDEQAYIWVVSSP  349 (720)
T ss_pred             eee-eeecCCCCceEeccCCCcceeeeeecCc
Confidence            122 2246899999999999999999998764

>KOG0303|consensus

Probab=99.90  E-value=7.5e-22  Score=142.37  Aligned_cols=207  Identities=18%  Similarity=0.268  Sum_probs=154.3

Q ss_pred             ceEEEEEcC-----CCCeEEEe---cCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCC-CCCeEEEEeCCccEEE
Q psy11529         11 PVTTHAWNN-----TRQQLAFT---PNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAP-NTNRIVTCSADRNAYV   81 (244)
Q Consensus        11 ~v~~~~~~~-----~~~~l~~~---~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i   81 (244)
                      +|+...|..     +.+++|+.   +..|...|.-+..-+.--...-.+.+|+++|..++|+| +...||+|+.|.+|.|
T Consensus        29 rVs~~tWDS~fcavNPkfiAvi~easgGgaf~ViPl~k~Gr~d~~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~v  108 (472)
T KOG0303|consen   29 RVSRVTWDSSFCAVNPKFVAVIIEASGGGAFLVIPLVKTGRMDASYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMV  108 (472)
T ss_pred             eeeeeeccccccccCCceEEEEEecCCCcceeecccccccccCCCCCCccCccccccccccCccCCceeecCCCCceEEE
Confidence            455555543     34555542   33345555544321111123345678999999999999 7789999999999999


Q ss_pred             EeeeCCCCC----ceeeEEEeccCcceEEEEECCC-CCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEec
Q psy11529         82 WTQNNDDKK----WKPTLVLLRINRAATCVKWSPL-ENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWH  156 (244)
Q Consensus        82 wd~~~~~~~----~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~  156 (244)
                      |.+ .+.+.    ..+...+.+|...|-.++|+|. .+.|++++.|.+|.+|++.++..   ...  ..|...|.+++|+
T Consensus       109 W~I-Pe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgea---li~--l~hpd~i~S~sfn  182 (472)
T KOG0303|consen  109 WQI-PENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEA---LIT--LDHPDMVYSMSFN  182 (472)
T ss_pred             EEC-CCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCce---eee--cCCCCeEEEEEec
Confidence            995 22221    2345667889999999999997 57799999999999999999975   222  3388999999999


Q ss_pred             CCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEee---CCCc
Q psy11529        157 PNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTS---HDGS  233 (244)
Q Consensus       157 p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~---~dg~  233 (244)
                      .||.+|++.+.|..|+|||.                  +.++.+.+-.+|.  +..-..+.|-.+|.++-||-   ++..
T Consensus       183 ~dGs~l~TtckDKkvRv~dp------------------r~~~~v~e~~~he--G~k~~Raifl~~g~i~tTGfsr~seRq  242 (472)
T KOG0303|consen  183 RDGSLLCTTCKDKKVRVIDP------------------RRGTVVSEGVAHE--GAKPARAIFLASGKIFTTGFSRMSERQ  242 (472)
T ss_pred             cCCceeeeecccceeEEEcC------------------CCCcEeeeccccc--CCCcceeEEeccCceeeeccccccccc
Confidence            99999999999999999999                  6677887777774  45566778888998555542   4778


Q ss_pred             EEEEeCCCCC
Q psy11529        234 INVRMSQQVL  243 (244)
Q Consensus       234 i~vwd~~~~~  243 (244)
                      +-+||..++.
T Consensus       243 ~aLwdp~nl~  252 (472)
T KOG0303|consen  243 IALWDPNNLE  252 (472)
T ss_pred             eeccCccccc
Confidence            9999988763

>KOG2106|consensus

Probab=99.90  E-value=6e-21  Score=141.80  Aligned_cols=197  Identities=16%  Similarity=0.215  Sum_probs=153.5

Q ss_pred             CCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCCC
Q psy11529          9 INPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDD   88 (244)
Q Consensus         9 ~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~   88 (244)
                      +.-|.|++|.++|+ +++|..+|.|.||+..+  .  +..+....|++.|.++....+|.+| +|+.|+.|..||-+.++
T Consensus       246 kk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~--~--~~~k~~~aH~ggv~~L~~lr~Gtll-SGgKDRki~~Wd~~y~k  319 (626)
T KOG2106|consen  246 KKFVLCVTFLENGD-VITGDSGGNILIWSKGT--N--RISKQVHAHDGGVFSLCMLRDGTLL-SGGKDRKIILWDDNYRK  319 (626)
T ss_pred             ceEEEEEEEcCCCC-EEeecCCceEEEEeCCC--c--eEEeEeeecCCceEEEEEecCccEe-ecCccceEEeccccccc
Confidence            46799999999987 55899999999999966  3  4444555899999999999988765 49999999999832111


Q ss_pred             CCc------------------------------------eeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeec
Q psy11529         89 KKW------------------------------------KPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFES  132 (244)
Q Consensus        89 ~~~------------------------------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~  132 (244)
                      .+.                                    ...+...+|......++.+|+.+.+++++.|+.+++|+  .
T Consensus       320 ~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~  397 (626)
T KOG2106|consen  320 LRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--D  397 (626)
T ss_pred             cccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--C
Confidence            000                                    01122345667888999999999999999999999999  3


Q ss_pred             CCCceEEEeeecCCCCceeEEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCC
Q psy11529        133 ENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGW  212 (244)
Q Consensus       133 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (244)
                      .+..|..     ....++.++.|+|.| .++.|+..|...+.|.                  .+... .++...   ..+
T Consensus       398 ~k~~wt~-----~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~------------------e~~~l-v~~~~d---~~~  449 (626)
T KOG2106|consen  398 HKLEWTK-----IIEDPAECADFHPSG-VVAVGTATGRWFVLDT------------------ETQDL-VTIHTD---NEQ  449 (626)
T ss_pred             CceeEEE-----EecCceeEeeccCcc-eEEEeeccceEEEEec------------------cccee-EEEEec---CCc
Confidence            3332222     223678899999999 9999999999999998                  34333 334333   789


Q ss_pred             eEEEEEecCCCEEEEeeCCCcEEEEeCCC
Q psy11529        213 IHSVAFSKDGNKLCWTSHDGSINVRMSQQ  241 (244)
Q Consensus       213 v~~~~~s~~~~~l~~~~~dg~i~vwd~~~  241 (244)
                      ++.++|+|+|.+||.|+.|+.|+||-+..
T Consensus       450 ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~  478 (626)
T KOG2106|consen  450 LSVVRYSPDGAFLAVGSHDNHIYIYRVSA  478 (626)
T ss_pred             eEEEEEcCCCCEEEEecCCCeEEEEEECC
Confidence            99999999999999999999999998764

>KOG1539|consensus

Probab=99.90  E-value=3.9e-21  Score=150.26  Aligned_cols=229  Identities=17%  Similarity=0.173  Sum_probs=158.4

Q ss_pred             eEEeC--CCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCe-EEEEeCCccEE
Q psy11529          4 VYSFG--INPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNR-IVTCSADRNAY   80 (244)
Q Consensus         4 ~~~~~--~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~   80 (244)
                      +|++.  ...|+++.-+|--..+|.|..+|+|.|+++..  +  +.+.+++...++|++++|..||+. +++|+..|.+.
T Consensus       195 v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~--d--kil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~  270 (910)
T KOG1539|consen  195 VYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKF--D--KILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMA  270 (910)
T ss_pred             EEEecccccceeEeccCCcceEEEEeccCceEEEEEccc--C--cEEEEEEccccceeEEEeccCCCeeEEeccCCceEE
Confidence            44443  68999999999889999999999999999987  5  778888844599999999999985 55666679999


Q ss_pred             EEeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCC-------------------------
Q psy11529         81 VWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESEND-------------------------  135 (244)
Q Consensus        81 iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~-------------------------  135 (244)
                      +||  ++..+...... ..|.+.+....|-|....+++++.|+.+++|-.+++..                         
T Consensus       271 ~wD--Le~kkl~~v~~-nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g  347 (910)
T KOG1539|consen  271 FWD--LEKKKLINVTR-NAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQG  347 (910)
T ss_pred             EEE--cCCCeeeeeee-ccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCc
Confidence            999  56554332222 34455555555555555555555555555554431110                         


Q ss_pred             --------------------------------------------------------------------------------
Q psy11529        136 --------------------------------------------------------------------------------  135 (244)
Q Consensus       136 --------------------------------------------------------------------------------  135 (244)
                                                                                                      
T Consensus       348 ~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW  427 (910)
T KOG1539|consen  348 HFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTW  427 (910)
T ss_pred             EEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEE
Confidence                                                                                            


Q ss_pred             --------ce-------------------------------------------EEEeee---cCCCCceeEEEecCCCCE
Q psy11529        136 --------WW-------------------------------------------VAKHIK---KPIKSTITCLDWHPNNHL  161 (244)
Q Consensus       136 --------~~-------------------------------------------~~~~~~---~~~~~~v~~~~~~p~~~~  161 (244)
                              .+                                           .....+   ..|.++|++++....++.
T Consensus       428 ~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~  507 (910)
T KOG1539|consen  428 NFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRL  507 (910)
T ss_pred             eccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCce
Confidence                    00                                           001111   244567777887777788


Q ss_pred             EEEeeCCCeEEEEEeeecccccCCCCC-----------------------CCCccccccceeEEecCCCCCCCCeEEEEE
Q psy11529        162 LGCGSTDFKVRVFSAYIKDIESAPQST-----------------------NWGSKSTLGNCLVELNNSSSGGGWIHSVAF  218 (244)
Q Consensus       162 l~~~~~dg~i~i~d~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  218 (244)
                      +++++.+|.+.+||.....+...-...                       ..-.+..+.+.+..+.+|   ...|++++|
T Consensus       508 ~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh---~nritd~~F  584 (910)
T KOG1539|consen  508 LVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGH---GNRITDMTF  584 (910)
T ss_pred             EEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhcc---ccceeeeEe
Confidence            888888999999988644322111000                       000033445566678888   999999999


Q ss_pred             ecCCCEEEEeeCCCcEEEEeCCCC
Q psy11529        219 SKDGNKLCWTSHDGSINVRMSQQV  242 (244)
Q Consensus       219 s~~~~~l~~~~~dg~i~vwd~~~~  242 (244)
                      ||||++|++++.|++|++||+.+.
T Consensus       585 S~DgrWlisasmD~tIr~wDlpt~  608 (910)
T KOG1539|consen  585 SPDGRWLISASMDSTIRTWDLPTG  608 (910)
T ss_pred             CCCCcEEEEeecCCcEEEEeccCc
Confidence            999999999999999999999764

>KOG0294|consensus

Probab=99.89  E-value=4.2e-21  Score=134.77  Aligned_cols=146  Identities=16%  Similarity=0.165  Sum_probs=118.2

Q ss_pred             eEEEecCCCeEEEeeeccCC--------CcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCCCCCceee
Q psy11529         23 QLAFTPNNQEVHLYQYEKAA--------NDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKWKPT   94 (244)
Q Consensus        23 ~l~~~~~d~~v~v~~~~~~~--------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~   94 (244)
                      .|++|+....|.-+++..+.        ..+.+...+..|.++|++++.+  +.++++|+.|.+|+|||  +.....  .
T Consensus         3 ~iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYD--m~k~~q--l   76 (362)
T KOG0294|consen    3 EIIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYD--MRKRKQ--L   76 (362)
T ss_pred             eEEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEec--ceeEeccCCCCcEEEEe--ccchhh--h
Confidence            36777777777777764311        1123355677899999999997  89999999999999999  555543  3


Q ss_pred             EEEeccCcceEEEEECCCCC--eEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEeeCCCeEE
Q psy11529         95 LVLLRINRAATCVKWSPLEN--KFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVR  172 (244)
Q Consensus        95 ~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~i~  172 (244)
                      -.+..|.+.++++.|.+.-.  .|++|+.||.|.+|+...-    .......+|.+.|+.++.+|.|++-++.+.|+.++
T Consensus        77 g~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W----~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr  152 (362)
T KOG0294|consen   77 GILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSW----ELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLR  152 (362)
T ss_pred             cceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCe----EEeeeecccccccceeEecCCCceEEEEcCCceee
Confidence            33456899999999998754  8999999999999997764    56788889999999999999999999999999999


Q ss_pred             EEEeee
Q psy11529        173 VFSAYI  178 (244)
Q Consensus       173 i~d~~~  178 (244)
                      +|++-.
T Consensus       153 ~WNLV~  158 (362)
T KOG0294|consen  153 TWNLVR  158 (362)
T ss_pred             eehhhc
Confidence            999843

>KOG1538|consensus

Probab=99.89  E-value=4.4e-21  Score=147.34  Aligned_cols=222  Identities=18%  Similarity=0.261  Sum_probs=154.1

Q ss_pred             CCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCCC
Q psy11529          9 INPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDD   88 (244)
Q Consensus         9 ~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~   88 (244)
                      ...|..++|.|||..|+.+. +..+.+||..+  +  ..+.++++|+..|.+++|+.||+++++|+.|..|.+|.-..+.
T Consensus        12 ~hci~d~afkPDGsqL~lAA-g~rlliyD~nd--G--~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG   86 (1081)
T KOG1538|consen   12 EHCINDIAFKPDGTQLILAA-GSRLLVYDTSD--G--TLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEG   86 (1081)
T ss_pred             ccchheeEECCCCceEEEec-CCEEEEEeCCC--c--ccccccccccceEEEEEEccCCceeccCCCceeEEEecccccc
Confidence            34789999999999888875 56899999987  5  7889999999999999999999999999999999999831110


Q ss_pred             ------CCceeeEEE---------------------------eccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCC
Q psy11529         89 ------KKWKPTLVL---------------------------LRINRAATCVKWSPLENKFAAGSGARLISVCYFESEND  135 (244)
Q Consensus        89 ------~~~~~~~~~---------------------------~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~  135 (244)
                            +..++-+.+                           ......+.+++|..||++++.|-.+|+|.+-+-.....
T Consensus        87 ~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek  166 (1081)
T KOG1538|consen   87 ILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEK  166 (1081)
T ss_pred             eeeeccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcc
Confidence                  000000000                           01234678899999999999999999999864333322


Q ss_pred             ceEEEeeecCCCCceeEEEecCCC-----CEEEEeeCCCeEEEEEeeecccccCCCCC---------------CCCc---
Q psy11529        136 WWVAKHIKKPIKSTITCLDWHPNN-----HLLGCGSTDFKVRVFSAYIKDIESAPQST---------------NWGS---  192 (244)
Q Consensus       136 ~~~~~~~~~~~~~~v~~~~~~p~~-----~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---------------~~~~---  192 (244)
                        .......+.+++|.+++|+|..     ..+++.....++..|.+....+.......               ..+.   
T Consensus       167 --~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk  244 (1081)
T KOG1538|consen  167 --VKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDRALNFDPCCISYFTNGEYILLGGSDK  244 (1081)
T ss_pred             --eEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeecccccCCCCchhheeccCCcEEEEccCCC
Confidence              2222233456788888888843     36667777777777776432222110000               0000   


Q ss_pred             ----cccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCC
Q psy11529        193 ----KSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQ  240 (244)
Q Consensus       193 ----~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~  240 (244)
                          ..+.+-.+.++-..   ..+|..++..|++++++.|+.||+|..|++-
T Consensus       245 ~L~~fTR~GvrLGTvg~~---D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~  293 (1081)
T KOG1538|consen  245 QLSLFTRDGVRLGTVGEQ---DSWIWTVQAKPNSQYVVVGCQDGTIACYNLI  293 (1081)
T ss_pred             ceEEEeecCeEEeecccc---ceeEEEEEEccCCceEEEEEccCeeehhhhH
Confidence                11234444444444   7899999999999999999999999998863

>KOG2445|consensus

Probab=99.89  E-value=6.8e-21  Score=133.37  Aligned_cols=186  Identities=19%  Similarity=0.320  Sum_probs=141.1

Q ss_pred             ccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCCCCCceeeEEEeccCcceEEEEEC-CC-CCeEEEeeCCCeEEEEE
Q psy11529         52 DGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWS-PL-ENKFAAGSGARLISVCY  129 (244)
Q Consensus        52 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~-~~~l~~~~~d~~i~i~d  129 (244)
                      .+|..-|.++.|.+.|+++|+|+.|++++|||.+-.++.+.....-..|.+.|..+.|. |. |+.+|+++.|+++.||.
T Consensus        10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE   89 (361)
T KOG2445|consen   10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE   89 (361)
T ss_pred             cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence            46888999999999999999999999999999655667777777778899999999995 44 89999999999999998


Q ss_pred             ee-----cCCCceEEEeeecCCCCceeEEEecCC--CCEEEEeeCCCeEEEEEeeec----------ccc---cCCCC--
Q psy11529        130 FE-----SENDWWVAKHIKKPIKSTITCLDWHPN--NHLLGCGSTDFKVRVFSAYIK----------DIE---SAPQS--  187 (244)
Q Consensus       130 ~~-----~~~~~~~~~~~~~~~~~~v~~~~~~p~--~~~l~~~~~dg~i~i~d~~~~----------~~~---~~~~~--  187 (244)
                      -.     .....|..........+.|+++.|.|.  |-.||+++.||.+|||+.-..          ++.   .++..  
T Consensus        90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~  169 (361)
T KOG2445|consen   90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNK  169 (361)
T ss_pred             ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccccc
Confidence            52     222346666677777889999999994  568999999999999986210          111   00000  


Q ss_pred             ---------------C--C-----------------CCccccccceeEEecCCCCCCCCeEEEEEecC----CCEEEEee
Q psy11529        188 ---------------T--N-----------------WGSKSTLGNCLVELNNSSSGGGWIHSVAFSKD----GNKLCWTS  229 (244)
Q Consensus       188 ---------------~--~-----------------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~----~~~l~~~~  229 (244)
                                     .  .                 .....+....+.++.+|   ..+|+.++|.|+    -..||+++
T Consensus       170 ~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~---~dpI~di~wAPn~Gr~y~~lAvA~  246 (361)
T KOG2445|consen  170 QPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDH---TDPIRDISWAPNIGRSYHLLAVAT  246 (361)
T ss_pred             CcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCC---CCcceeeeeccccCCceeeEEEee
Confidence                           0  0                 00011223344556666   899999999994    34799999


Q ss_pred             CCCcEEEEeCCC
Q psy11529        230 HDGSINVRMSQQ  241 (244)
Q Consensus       230 ~dg~i~vwd~~~  241 (244)
                      .|| |+||.++.
T Consensus       247 kDg-v~I~~v~~  257 (361)
T KOG2445|consen  247 KDG-VRIFKVKV  257 (361)
T ss_pred             cCc-EEEEEEee
Confidence            999 99999984

>KOG1188|consensus

Probab=99.89  E-value=1.3e-21  Score=138.67  Aligned_cols=195  Identities=18%  Similarity=0.321  Sum_probs=152.2

Q ss_pred             CeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCC--CCCeEEEEeCCccEEEEeeeCCCCCceeeEEEec
Q psy11529         22 QQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAP--NTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLR   99 (244)
Q Consensus        22 ~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~   99 (244)
                      ..+|++-..|.|++||..+  +  +.+..+++++..++.+.|..  .+..+.+|+.||+|++||+  +.......+....
T Consensus        41 ~~vav~lSngsv~lyd~~t--g--~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~--Rs~~e~a~~~~~~  114 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGT--G--QLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDI--RSQAESARISWTQ  114 (376)
T ss_pred             eeEEEEecCCeEEEEeccc--h--hhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEe--ecchhhhheeccC
Confidence            4588888899999999987  5  78889999999999999977  4567889999999999995  4444444555445


Q ss_pred             cC-cceEEEEECCCCCeEEEeeC----CCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCC-CCEEEEeeCCCeEEE
Q psy11529        100 IN-RAATCVKWSPLENKFAAGSG----ARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPN-NHLLGCGSTDFKVRV  173 (244)
Q Consensus       100 ~~-~~v~~~~~~~~~~~l~~~~~----d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~-~~~l~~~~~dg~i~i  173 (244)
                      ++ .+..+++.+-.++.+++|+.    +-.+.+||++..++  ........|...|+++.|+|. .++|++|+.||.|.|
T Consensus       115 ~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq--~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnl  192 (376)
T KOG1188|consen  115 QSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQ--LLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNL  192 (376)
T ss_pred             CCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccc--hhhhhhhhccCcceeEEecCCCCCeEEeecccceEEe
Confidence            54 46677777767788888764    67899999999875  355667889999999999994 579999999999999


Q ss_pred             EEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCC-CEEEEeeCCCcEEEEeCCCC
Q psy11529        174 FSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDG-NKLCWTSHDGSINVRMSQQV  242 (244)
Q Consensus       174 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~vwd~~~~  242 (244)
                      ||+....              ....++..+ .+   ...|..+.|..++ +.|.+-+..++..+|+++..
T Consensus       193 fD~~~d~--------------EeDaL~~vi-N~---~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~  244 (376)
T KOG1188|consen  193 FDTKKDN--------------EEDALLHVI-NH---GSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDG  244 (376)
T ss_pred             eecCCCc--------------chhhHHHhh-cc---cceeeeeeeecCCcceEEEEEccCceeEEEccCC
Confidence            9984321              112233333 33   7789999999887 35778889999999999864

>KOG1063|consensus

Probab=99.89  E-value=9.1e-22  Score=150.91  Aligned_cols=218  Identities=15%  Similarity=0.141  Sum_probs=169.1

Q ss_pred             eEEeCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEe
Q psy11529          4 VYSFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWT   83 (244)
Q Consensus         4 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd   83 (244)
                      ..+-|.+.|++++|+|.|.+|++.+.|-+-|+|-.-+...++..+..-+-|...++|++|-+....+++|.++.-+++|+
T Consensus       356 ~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~  435 (764)
T KOG1063|consen  356 VISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFE  435 (764)
T ss_pred             ccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCceeeecccceeeeeec
Confidence            34456899999999999999999999999999986532234566666677899999999998777888998888899987


Q ss_pred             ee-----------------------------------------CCCCCc----e--------------------------
Q psy11529         84 QN-----------------------------------------NDDKKW----K--------------------------   92 (244)
Q Consensus        84 ~~-----------------------------------------~~~~~~----~--------------------------   92 (244)
                      .-                                         .+++..    .                          
T Consensus       436 aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLw  515 (764)
T KOG1063|consen  436 APKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLW  515 (764)
T ss_pred             CcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccc
Confidence            42                                         000000    0                          


Q ss_pred             -eeEEEeccCcceEEEEECCCCCeEEEeeCCC-----eEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEee
Q psy11529         93 -PTLVLLRINRAATCVKWSPLENKFAAGSGAR-----LISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGS  166 (244)
Q Consensus        93 -~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-----~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~  166 (244)
                       ....+.+|...|++++.+|+++++|+++...     .|++|+..+-..    ......|.-.|+.++|+|||++|++.+
T Consensus       516 PEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~----~~~L~~HsLTVT~l~FSpdg~~LLsvs  591 (764)
T KOG1063|consen  516 PEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQ----VQELEGHSLTVTRLAFSPDGRYLLSVS  591 (764)
T ss_pred             hhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhh----hheecccceEEEEEEECCCCcEEEEee
Confidence             0012346778899999999999999998743     588888766544    445678888999999999999999999


Q ss_pred             CCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCCC
Q psy11529        167 TDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQV  242 (244)
Q Consensus       167 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~  242 (244)
                      .|.++.+|.......              ........+.|   ..-|.++.|+|++.+++|+|.|.+|++|...+.
T Consensus       592 RDRt~sl~~~~~~~~--------------~e~~fa~~k~H---tRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~  650 (764)
T KOG1063|consen  592 RDRTVSLYEVQEDIK--------------DEFRFACLKAH---TRIIWDCSWSPDEKYFATASRDKKVKVWEEPDL  650 (764)
T ss_pred             cCceEEeeeeecccc--------------hhhhhcccccc---ceEEEEcccCcccceeEEecCCceEEEEeccCc
Confidence            999999999732211              11223446677   889999999999999999999999999988764

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.89  E-value=3.8e-20  Score=138.25  Aligned_cols=185  Identities=11%  Similarity=0.077  Sum_probs=133.7

Q ss_pred             CCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeE-EEEeCCccEEEEeeeCCCCCceeeEEEec
Q psy11529         21 RQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRI-VTCSADRNAYVWTQNNDDKKWKPTLVLLR   99 (244)
Q Consensus        21 ~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~   99 (244)
                      ++.+++++.|+.|++||+.+  +  +....+..+. .+.+++|+|+++.+ ++++.++.|++||  ..+++....+  ..
T Consensus         1 ~~~~~s~~~d~~v~~~d~~t--~--~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d--~~~~~~~~~~--~~   71 (300)
T TIGR03866         1 EKAYVSNEKDNTISVIDTAT--L--EVTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVID--LATGEVIGTL--PS   71 (300)
T ss_pred             CcEEEEecCCCEEEEEECCC--C--ceEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEE--CCCCcEEEec--cC
Confidence            35788889999999999976  4  5566666543 46789999999876 5667789999999  6776643322  22


Q ss_pred             cCcceEEEEECCCCCeEEEe-eCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEeeCCC-eEEEEEee
Q psy11529        100 INRAATCVKWSPLENKFAAG-SGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDF-KVRVFSAY  177 (244)
Q Consensus       100 ~~~~v~~~~~~~~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg-~i~i~d~~  177 (244)
                       ...+..++|+|+++.++++ ..++.+++||+++.+.   . ... .....+.+++|+|+|++++++..++ .+.+||. 
T Consensus        72 -~~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~---~-~~~-~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~-  144 (300)
T TIGR03866        72 -GPDPELFALHPNGKILYIANEDDNLVTVIDIETRKV---L-AEI-PVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDT-  144 (300)
T ss_pred             -CCCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeE---E-eEe-eCCCCcceEEECCCCCEEEEEecCCCeEEEEeC-
Confidence             2335678999999877655 5689999999987643   1 111 1223567899999999999888765 5677887 


Q ss_pred             ecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEe-eCCCcEEEEeCCCC
Q psy11529        178 IKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWT-SHDGSINVRMSQQV  242 (244)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~vwd~~~~  242 (244)
                                       ..++.......    ......++|+|+|++|+++ ..++.|++||+++.
T Consensus       145 -----------------~~~~~~~~~~~----~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~  189 (300)
T TIGR03866       145 -----------------KTYEIVDNVLV----DQRPRFAEFTADGKELWVSSEIGGTVSVIDVATR  189 (300)
T ss_pred             -----------------CCCeEEEEEEc----CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcc
Confidence                             34444443333    3445789999999988654 46999999999753

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0321|consensus

Probab=99.88  E-value=4.3e-21  Score=146.09  Aligned_cols=215  Identities=14%  Similarity=0.154  Sum_probs=152.2

Q ss_pred             EEEEcC---CCCeEEEecCCCeEEEeeeccCCCcce----eeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeC
Q psy11529         14 THAWNN---TRQQLAFTPNNQEVHLYQYEKAANDWS----QLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNN   86 (244)
Q Consensus        14 ~~~~~~---~~~~l~~~~~d~~v~v~~~~~~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~   86 (244)
                      +..|++   ..+.|+.+.++|.|.++|...  ..++    .+.....|...|..++|-|....|++++.|.++++||  +
T Consensus        54 ~~sFs~~~n~eHiLavadE~G~i~l~dt~~--~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wd--v  129 (720)
T KOG0321|consen   54 ADSFSAAPNKEHILAVADEDGGIILFDTKS--IVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWD--V  129 (720)
T ss_pred             cccccCCCCccceEEEecCCCceeeecchh--hhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeee--e
Confidence            356665   234789999999999999865  2222    2355667999999999999667899999999999999  7


Q ss_pred             CCCCceeeEEEeccCcceEEEEECCC-CCeEEEeeCCCeEEEEEeecCCCc---------e----E----------EEee
Q psy11529         87 DDKKWKPTLVLLRINRAATCVKWSPL-ENKFAAGSGARLISVCYFESENDW---------W----V----------AKHI  142 (244)
Q Consensus        87 ~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~---------~----~----------~~~~  142 (244)
                      +..+........+|...+.+++|.|. ...|++|+.||.+.|||++.....         .    .          ....
T Consensus       130 k~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k  209 (720)
T KOG0321|consen  130 KTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRK  209 (720)
T ss_pred             ccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccc
Confidence            77776655556799999999999997 456889999999999999765410         0    0          0001


Q ss_pred             ecCCCCceeE---EEecCCCCEEEEeeC-CCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEE
Q psy11529        143 KKPIKSTITC---LDWHPNNHLLGCGST-DFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAF  218 (244)
Q Consensus       143 ~~~~~~~v~~---~~~~p~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  218 (244)
                      ...+...+.+   +.+..|...||+++. |+.|+|||++.........+..          ...+..|......+.++..
T Consensus       210 ~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~----------~~~~~t~skrs~G~~nL~l  279 (720)
T KOG0321|consen  210 WKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRG----------SDKYPTHSKRSVGQVNLIL  279 (720)
T ss_pred             cccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCc----------ccCccCcccceeeeEEEEe
Confidence            1122334444   556668888998887 9999999997554332111110          1111111111345778888


Q ss_pred             ecCCCEEEEeeCCCcEEEEeCCCC
Q psy11529        219 SKDGNKLCWTSHDGSINVRMSQQV  242 (244)
Q Consensus       219 s~~~~~l~~~~~dg~i~vwd~~~~  242 (244)
                      ...|.+|++.+.|++|++||+..+
T Consensus       280 DssGt~L~AsCtD~sIy~ynm~s~  303 (720)
T KOG0321|consen  280 DSSGTYLFASCTDNSIYFYNMRSL  303 (720)
T ss_pred             cCCCCeEEEEecCCcEEEEecccc
Confidence            888899998889999999999864

>KOG1445|consensus

Probab=99.88  E-value=1.3e-21  Score=149.33  Aligned_cols=202  Identities=15%  Similarity=0.250  Sum_probs=149.7

Q ss_pred             EcCCCCeEEE--ecCCCeEEEeeeccCCCcce-eeeeeccCCCceEEEEeCC-CCCeEEEEeCCccEEEEeeeCCC---C
Q psy11529         17 WNNTRQQLAF--TPNNQEVHLYQYEKAANDWS-QLDVLDGHDLKVTGIDWAP-NTNRIVTCSADRNAYVWTQNNDD---K   89 (244)
Q Consensus        17 ~~~~~~~l~~--~~~d~~v~v~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~---~   89 (244)
                      |+.+..++|+  ++..|.|.||++..++.-.. .+-.+. ....|+.+.|.| |...|+.+++||.|++|.+....   .
T Consensus       587 fcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~-Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~  665 (1012)
T KOG1445|consen  587 FCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLF-NGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPEN  665 (1012)
T ss_pred             eeeccceEEEEecCCCceEEEEEcCCCCCCCcccccccc-cCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcc
Confidence            3344455554  35579999999987542111 111222 467899999999 88899999999999999952211   1


Q ss_pred             CceeeEEEeccCcceEEEEECCC-CCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEeeCC
Q psy11529         90 KWKPTLVLLRINRAATCVKWSPL-ENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTD  168 (244)
Q Consensus        90 ~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d  168 (244)
                      ...+...+..|...|+++.|+|- ...|++++.|.+|++||+.+.+.    ...+.+|.+.|..++|+|+|+.+++.+.|
T Consensus       666 ~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~----~~~l~gHtdqIf~~AWSpdGr~~AtVcKD  741 (1012)
T KOG1445|consen  666 EMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKL----YSRLVGHTDQIFGIAWSPDGRRIATVCKD  741 (1012)
T ss_pred             cCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhh----hheeccCcCceeEEEECCCCcceeeeecC
Confidence            23344556778999999999996 67899999999999999999875    56678899999999999999999999999


Q ss_pred             CeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCC----cEEEEeCCCC
Q psy11529        169 FKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDG----SINVRMSQQV  242 (244)
Q Consensus       169 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg----~i~vwd~~~~  242 (244)
                      |+|++|..+..                 .+++.+-.+.-  +..--.+.|.-||++++..+.|.    .|.+||.+++
T Consensus       742 g~~rVy~Prs~-----------------e~pv~Eg~gpv--gtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l  800 (1012)
T KOG1445|consen  742 GTLRVYEPRSR-----------------EQPVYEGKGPV--GTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTL  800 (1012)
T ss_pred             ceEEEeCCCCC-----------------CCccccCCCCc--cCcceeEEEEecCcEEEEecccccchhhhhhhhhhhc
Confidence            99999998632                 33444333321  33345678888999888777654    5888887764

>KOG0650|consensus

Probab=99.88  E-value=4.1e-21  Score=145.35  Aligned_cols=210  Identities=16%  Similarity=0.160  Sum_probs=153.6

Q ss_pred             eeEEeCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCC--eEEEEeCCccEE
Q psy11529          3 EVYSFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTN--RIVTCSADRNAY   80 (244)
Q Consensus         3 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~   80 (244)
                      -++..|++.|.++...|.|.+|++|+.||+|+||.+.+  +  .++.++. ..+.|.|++|+|.+.  .||++- ...+.
T Consensus       394 lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~T--g--Rcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~-~~~~~  467 (733)
T KOG0650|consen  394 LVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIAT--G--RCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAV-GECVL  467 (733)
T ss_pred             eeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeec--c--eEEEEEe-ecceeEEEEecCCCCceeEEEEe-cCceE
Confidence            46788999999999999999999999999999999988  6  7888777 567899999999654  344333 33344


Q ss_pred             EEeee-------------------------------CCCC--CceeeEEEeccCcceEEEEECCCCCeEEEeeCC---Ce
Q psy11529         81 VWTQN-------------------------------NDDK--KWKPTLVLLRINRAATCVKWSPLENKFAAGSGA---RL  124 (244)
Q Consensus        81 iwd~~-------------------------------~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~  124 (244)
                      |-+-.                               ....  ..........|...|..+.|+..|.||++...+   ..
T Consensus       468 ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~  547 (733)
T KOG0650|consen  468 IVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKS  547 (733)
T ss_pred             EeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcce
Confidence            43310                               1000  000011233577889999999999999987653   45


Q ss_pred             EEEEEeecCCCce--------EEEee-----------------------------ecCCCCceeEEEecCCCCEEEEeeC
Q psy11529        125 ISVCYFESENDWW--------VAKHI-----------------------------KKPIKSTITCLDWHPNNHLLGCGST  167 (244)
Q Consensus       125 i~i~d~~~~~~~~--------~~~~~-----------------------------~~~~~~~v~~~~~~p~~~~l~~~~~  167 (244)
                      |.|+++.......        .....                             .......|..++.+|.|.-|+.|+.
T Consensus       548 VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~  627 (733)
T KOG0650|consen  548 VLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSY  627 (733)
T ss_pred             EEEEecccccccCchhhcCCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecC
Confidence            7777765433200        00000                             0112357889999999999999999


Q ss_pred             CCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEe
Q psy11529        168 DFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRM  238 (244)
Q Consensus       168 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd  238 (244)
                      |+.+..||+.                 ...++..++..|   ...+++++|++.-.++++|+.||++.|+-
T Consensus       628 d~k~~WfDld-----------------lsskPyk~lr~H---~~avr~Va~H~ryPLfas~sdDgtv~Vfh  678 (733)
T KOG0650|consen  628 DKKMCWFDLD-----------------LSSKPYKTLRLH---EKAVRSVAFHKRYPLFASGSDDGTVIVFH  678 (733)
T ss_pred             CCeeEEEEcc-----------------cCcchhHHhhhh---hhhhhhhhhccccceeeeecCCCcEEEEe
Confidence            9999999994                 345677778888   99999999999999999999999999874

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.88  E-value=4.1e-20  Score=143.98  Aligned_cols=194  Identities=16%  Similarity=0.148  Sum_probs=134.8

Q ss_pred             CCCceEEEEEcCCCCeEEEecCC---CeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEe-CCccEEEEe
Q psy11529          8 GINPVTTHAWNNTRQQLAFTPNN---QEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCS-ADRNAYVWT   83 (244)
Q Consensus         8 ~~~~v~~~~~~~~~~~l~~~~~d---~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd   83 (244)
                      +...+.+.+|+|||+.|++++.+   ..|++||+.+  +..+.+..+.+|   ...++|+|||+.|+.++ .+|.+.||.
T Consensus       202 ~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~t--g~~~~l~~~~g~---~~~~~wSPDG~~La~~~~~~g~~~Iy~  276 (429)
T PRK01742        202 SSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRS--GARKVVASFRGH---NGAPAFSPDGSRLAFASSKDGVLNIYV  276 (429)
T ss_pred             CCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCC--CceEEEecCCCc---cCceeECCCCCEEEEEEecCCcEEEEE
Confidence            45679999999999999987643   4799999977  433344444443   34689999999888764 588777775


Q ss_pred             eeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEee-CCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEE
Q psy11529         84 QNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGS-GARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLL  162 (244)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l  162 (244)
                      ++..++..   ..+..+...+....|+|||+.|+.++ .++...||+++.....  . ... .+..  ....|+|||++|
T Consensus       277 ~d~~~~~~---~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~--~-~~l-~~~~--~~~~~SpDG~~i  347 (429)
T PRK01742        277 MGANGGTP---SQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGG--A-SLV-GGRG--YSAQISADGKTL  347 (429)
T ss_pred             EECCCCCe---EeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCC--e-EEe-cCCC--CCccCCCCCCEE
Confidence            43655552   23344566788999999999877655 5788999988765431  1 111 2222  457899999999


Q ss_pred             EEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeC
Q psy11529        163 GCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMS  239 (244)
Q Consensus       163 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~  239 (244)
                      +..+.++ +.+||+                  .+++... +..    .....++.|+|||++|+.++.++.+.+|++
T Consensus       348 a~~~~~~-i~~~Dl------------------~~g~~~~-lt~----~~~~~~~~~sPdG~~i~~~s~~g~~~~l~~  400 (429)
T PRK01742        348 VMINGDN-VVKQDL------------------TSGSTEV-LSS----TFLDESPSISPNGIMIIYSSTQGLGKVLQL  400 (429)
T ss_pred             EEEcCCC-EEEEEC------------------CCCCeEE-ecC----CCCCCCceECCCCCEEEEEEcCCCceEEEE
Confidence            8887765 556898                  3343322 211    112356789999999999999998888775

>KOG4328|consensus

Probab=99.88  E-value=6.5e-21  Score=139.82  Aligned_cols=219  Identities=14%  Similarity=0.117  Sum_probs=160.1

Q ss_pred             eEEeCCCceEEEEEcCC-CCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEE
Q psy11529          4 VYSFGINPVTTHAWNNT-RQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVW   82 (244)
Q Consensus         4 ~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw   82 (244)
                      +++-|..+|.++.|+|. ...+++.+.||+|++-|+++  ...+.+..+......+.++.|+.+...++.+..=|...+|
T Consensus       229 ~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~--~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~i  306 (498)
T KOG4328|consen  229 LFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEG--NISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVI  306 (498)
T ss_pred             EeccCCccccceEecCCChhheeeeccCceeeeeeecc--hhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEE
Confidence            45567899999999994 45788889999999999988  5556666665456677888898877777788777799999


Q ss_pred             eeeCCCCCceeeEEEeccCcceEEEEECCC-CCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCE
Q psy11529         83 TQNNDDKKWKPTLVLLRINRAATCVKWSPL-ENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHL  161 (244)
Q Consensus        83 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~  161 (244)
                      |+  +++... ...+.-|...|..++++|. ..+||+++.|++.+|||++.-.....+.....+|...|.++.|+|++-.
T Consensus       307 D~--R~~~s~-~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gt  383 (498)
T KOG4328|consen  307 DL--RTDGSE-YENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGT  383 (498)
T ss_pred             Ee--ecCCcc-chhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCc
Confidence            95  443321 1122346779999999997 5669999999999999999876532223455678899999999998877


Q ss_pred             EEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCC--CeEEEEEecCCCEEEEeeCCCcEEEEeC
Q psy11529        162 LGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGG--WIHSVAFSKDGNKLCWTSHDGSINVRMS  239 (244)
Q Consensus       162 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~~~~~dg~i~vwd~  239 (244)
                      |+|.+.|..|+|||...-.              ....+..++.-.+....  .....+|.|+..+++.|-.-..|-|+|-
T Consensus       384 l~TT~~D~~IRv~dss~~s--------------a~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~  449 (498)
T KOG4328|consen  384 LLTTCQDNEIRVFDSSCIS--------------AKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDG  449 (498)
T ss_pred             eEeeccCCceEEeeccccc--------------ccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcC
Confidence            9999999999999973100              01112222211100012  2345689999999999998888999886


Q ss_pred             CC
Q psy11529        240 QQ  241 (244)
Q Consensus       240 ~~  241 (244)
                      +.
T Consensus       450 ~~  451 (498)
T KOG4328|consen  450 NG  451 (498)
T ss_pred             CC
Confidence            54

>KOG1445|consensus

Probab=99.87  E-value=2.3e-21  Score=148.09  Aligned_cols=209  Identities=17%  Similarity=0.192  Sum_probs=151.3

Q ss_pred             CCceEEEEEcC-CCCeEEEecCCCeEEEeeeccCC---CcceeeeeeccCCCceEEEEeCC-CCCeEEEEeCCccEEEEe
Q psy11529          9 INPVTTHAWNN-TRQQLAFTPNNQEVHLYQYEKAA---NDWSQLDVLDGHDLKVTGIDWAP-NTNRIVTCSADRNAYVWT   83 (244)
Q Consensus         9 ~~~v~~~~~~~-~~~~l~~~~~d~~v~v~~~~~~~---~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd   83 (244)
                      ...|+++.|.| |...||+++.||.|++|.+...+   ....+...++.|...|+++.|+| -...|++++.|-+|++||
T Consensus       627 gt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWD  706 (1012)
T KOG1445|consen  627 GTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWD  706 (1012)
T ss_pred             CceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeee
Confidence            56799999999 77899999999999999986522   22345677889999999999999 667899999999999999


Q ss_pred             eeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEE
Q psy11529         84 QNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLG  163 (244)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~  163 (244)
                        +.+.+..  ..+.+|.+.|..++|+|+|+.+|+.+.||++++|.-++...  ....-..+....-..+.|.-+|++++
T Consensus       707 --l~~~~~~--~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~--pv~Eg~gpvgtRgARi~wacdgr~vi  780 (1012)
T KOG1445|consen  707 --LANAKLY--SRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQ--PVYEGKGPVGTRGARILWACDGRIVI  780 (1012)
T ss_pred             --hhhhhhh--heeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCC--ccccCCCCccCcceeEEEEecCcEEE
Confidence              6776643  44578999999999999999999999999999999887764  11111122234455688888999888


Q ss_pred             EeeCC----CeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCC-EEEEeeCCCcEEEEe
Q psy11529        164 CGSTD----FKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGN-KLCWTSHDGSINVRM  238 (244)
Q Consensus       164 ~~~~d----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~vwd  238 (244)
                      +.+.|    ..|.+||...-+                +..+.+....-  .-.+.-..+.+|.. ++++|-.|..|.+|.
T Consensus       781 v~Gfdk~SeRQv~~Y~Aq~l~----------------~~pl~t~~lDv--aps~LvP~YD~Ds~~lfltGKGD~~v~~yE  842 (1012)
T KOG1445|consen  781 VVGFDKSSERQVQMYDAQTLD----------------LRPLYTQVLDV--APSPLVPHYDYDSNVLFLTGKGDRFVNMYE  842 (1012)
T ss_pred             Eecccccchhhhhhhhhhhcc----------------CCcceeeeecc--cCccccccccCCCceEEEecCCCceEEEEE
Confidence            77665    468888873221                22222221110  11122223455555 566777899999988


Q ss_pred             CCC
Q psy11529        239 SQQ  241 (244)
Q Consensus       239 ~~~  241 (244)
                      +-.
T Consensus       843 v~~  845 (1012)
T KOG1445|consen  843 VIY  845 (1012)
T ss_pred             ecC
Confidence            754

>KOG2919|consensus

Probab=99.87  E-value=9.5e-21  Score=133.61  Aligned_cols=192  Identities=17%  Similarity=0.238  Sum_probs=143.2

Q ss_pred             eEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeec----cCCCceEEEEeCC-CCCeEEEEeCCccEEEEeeeC
Q psy11529         12 VTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLD----GHDLKVTGIDWAP-NTNRIVTCSADRNAYVWTQNN   86 (244)
Q Consensus        12 v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~----~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~   86 (244)
                      ..+++|+|||.+|++| ....|++||+..++.......++.    +..+-|.+++|+| +...++.++...++-||.  .
T Consensus       161 AhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~--~  237 (406)
T KOG2919|consen  161 AHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYN--D  237 (406)
T ss_pred             heeEEecCCCCeEeec-ccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEe--c
Confidence            4589999999999876 568999999965443222222222    2367889999999 666899999999998988  4


Q ss_pred             CCCCceeeEEEeccCcceEEEEECCCCCeEEEeeC-CCeEEEEEeecCCCceEEEeeecCCCC---ceeEEEecCCCCEE
Q psy11529         87 DDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSG-ARLISVCYFESENDWWVAKHIKKPIKS---TITCLDWHPNNHLL  162 (244)
Q Consensus        87 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~---~v~~~~~~p~~~~l  162 (244)
                      ....  +...+.+|.+.|+.++|.++|+.|++|.. +..|..||++....   +......|..   .-.-....|++++|
T Consensus       238 ~~~~--pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~---pv~~L~rhv~~TNQRI~FDld~~~~~L  312 (406)
T KOG2919|consen  238 DGRR--PLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRD---PVYALERHVGDTNQRILFDLDPKGEIL  312 (406)
T ss_pred             CCCC--ceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccc---hhhhhhhhccCccceEEEecCCCCcee
Confidence            4444  34455689999999999999999999887 77899999997654   2222222222   22235566899999


Q ss_pred             EEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCC
Q psy11529        163 GCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHD  231 (244)
Q Consensus       163 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d  231 (244)
                      ++|+.||.|++||+.                 ..+.....+..+   ...++.++++|--.++++++..
T Consensus       313 asG~tdG~V~vwdlk-----------------~~gn~~sv~~~~---sd~vNgvslnP~mpilatssGq  361 (406)
T KOG2919|consen  313 ASGDTDGSVRVWDLK-----------------DLGNEVSVTGNY---SDTVNGVSLNPIMPILATSSGQ  361 (406)
T ss_pred             eccCCCccEEEEecC-----------------CCCCcccccccc---cccccceecCcccceeeeccCc
Confidence            999999999999993                 225556666666   8889999999998888877643

>KOG1408|consensus

Probab=99.87  E-value=2.4e-20  Score=144.19  Aligned_cols=194  Identities=15%  Similarity=0.191  Sum_probs=149.3

Q ss_pred             eEEEecCCCeEEEeeeccCCCcce---------eeee------------------------eccCCCceEEEEeCCCCCe
Q psy11529         23 QLAFTPNNQEVHLYQYEKAANDWS---------QLDV------------------------LDGHDLKVTGIDWAPNTNR   69 (244)
Q Consensus        23 ~l~~~~~d~~v~v~~~~~~~~~~~---------~~~~------------------------~~~~~~~v~~~~~~~~~~~   69 (244)
                      .|.+++.|++|++|+++.....-.         ....                        .-+....+.+++.+|+|++
T Consensus       394 cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqh  473 (1080)
T KOG1408|consen  394 CFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQH  473 (1080)
T ss_pred             ceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcce
Confidence            588999999999999865110000         0000                        0112346899999999999


Q ss_pred             EEEEeCCccEEEEeeeCCCCCceeeEEEeccCcceEEEEECCC---CCeEEEeeCCCeEEEEEeecCCCceEEEeeec--
Q psy11529         70 IVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPL---ENKFAAGSGARLISVCYFESENDWWVAKHIKK--  144 (244)
Q Consensus        70 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~--  144 (244)
                      ||+|..-|.+++|+  +..-+.  ...+..|...|.|+.|+..   .++||+++.|..|.|||....-.   +.....  
T Consensus       474 LAsGDr~GnlrVy~--Lq~l~~--~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~---l~qtld~H  546 (1080)
T KOG1408|consen  474 LASGDRGGNLRVYD--LQELEY--TCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYD---LVQTLDGH  546 (1080)
T ss_pred             ecccCccCceEEEE--ehhhhh--hhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccc---hhhhhccc
Confidence            99999999999999  555543  4455789999999999853   56799999999999999754321   000000  


Q ss_pred             -----------------------------------------------CCCCceeEEEecCCCCEEEEeeCCCeEEEEEee
Q psy11529        145 -----------------------------------------------PIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAY  177 (244)
Q Consensus       145 -----------------------------------------------~~~~~v~~~~~~p~~~~l~~~~~dg~i~i~d~~  177 (244)
                                                                     ..+..+..++..|..+++++++.|..|+|||+ 
T Consensus       547 SssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i-  625 (1080)
T KOG1408|consen  547 SSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDI-  625 (1080)
T ss_pred             ccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEec-
Confidence                                                           01346778889999999999999999999999 


Q ss_pred             ecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCC
Q psy11529        178 IKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQ  241 (244)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~  241 (244)
                                       ..++....|++.+.+.+....+...|.|-||++.+.|.++.++|.-+
T Consensus       626 -----------------~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~s  672 (1080)
T KOG1408|consen  626 -----------------ESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVS  672 (1080)
T ss_pred             -----------------cccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEecc
Confidence                             78889999987665578899999999999999999999999999754

>KOG2394|consensus

Probab=99.86  E-value=3.3e-20  Score=138.85  Aligned_cols=174  Identities=18%  Similarity=0.238  Sum_probs=126.2

Q ss_pred             CCCCeEEEecCCCeEEEeeeccCCCcceeeeeecc--CCCceEEEEeCC-CCCeEEEEeCCccEEEEeeeCCCC------
Q psy11529         19 NTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDG--HDLKVTGIDWAP-NTNRIVTCSADRNAYVWTQNNDDK------   89 (244)
Q Consensus        19 ~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~------   89 (244)
                      |.+--++.|-..|.|.+.|...  .++..+.....  .+..|+++.|-| +...++.+-.+|.+++||.....+      
T Consensus       183 ~~g~dllIGf~tGqvq~idp~~--~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~  260 (636)
T KOG2394|consen  183 PKGLDLLIGFTTGQVQLIDPIN--FEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSY  260 (636)
T ss_pred             CCCcceEEeeccCceEEecchh--hHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcc
Confidence            3445566776778888888654  21111111111  247899999999 445666677799999997421111      


Q ss_pred             ------Cce------------eeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCcee
Q psy11529         90 ------KWK------------PTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTIT  151 (244)
Q Consensus        90 ------~~~------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~  151 (244)
                            ...            +.....-..+.++..+|+|||++||+.+.||.++|||+.+...    .-..+..-+...
T Consensus       261 ~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eL----lg~mkSYFGGLL  336 (636)
T KOG2394|consen  261 QALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQEL----LGVMKSYFGGLL  336 (636)
T ss_pred             cccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHH----HHHHHhhccceE
Confidence                  000            0111111245788999999999999999999999999998865    333444457899


Q ss_pred             EEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEe
Q psy11529        152 CLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFS  219 (244)
Q Consensus       152 ~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  219 (244)
                      |++|+|||++|++|++|..|.||.+                  ...+.+..-++|   ..+|+.++|.
T Consensus       337 CvcWSPDGKyIvtGGEDDLVtVwSf------------------~erRVVARGqGH---kSWVs~VaFD  383 (636)
T KOG2394|consen  337 CVCWSPDGKYIVTGGEDDLVTVWSF------------------EERRVVARGQGH---KSWVSVVAFD  383 (636)
T ss_pred             EEEEcCCccEEEecCCcceEEEEEe------------------ccceEEEecccc---ccceeeEeec
Confidence            9999999999999999999999999                  677888888888   8999999998

>KOG0322|consensus

Probab=99.86  E-value=4.6e-20  Score=126.73  Aligned_cols=203  Identities=16%  Similarity=0.172  Sum_probs=146.7

Q ss_pred             CCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeec-cCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeC
Q psy11529          8 GINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLD-GHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNN   86 (244)
Q Consensus         8 ~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~   86 (244)
                      |.+.|+++.|-.+++ |.+|...|.|++|++.+  .  +....++ .+...|+.+.--|+ ..+.+-+.|+.+.+|++. 
T Consensus        13 ~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt--~--r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia-   85 (323)
T KOG0322|consen   13 HSSSVTSVLFQANER-LMSGLSVGIVKMWVLQT--E--RDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIA-   85 (323)
T ss_pred             ccchheehhhccchh-hhcccccceEEEEEeec--C--ccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEcc-
Confidence            467889999987765 77898999999999988  4  4444555 46778899988886 567788899999999953 


Q ss_pred             CCCCceeeE-------------------------EE--------------------------eccCcceEEEEECC-CCC
Q psy11529         87 DDKKWKPTL-------------------------VL--------------------------LRINRAATCVKWSP-LEN  114 (244)
Q Consensus        87 ~~~~~~~~~-------------------------~~--------------------------~~~~~~v~~~~~~~-~~~  114 (244)
                       -+......                         ..                          ....+.+.+..+.- ++.
T Consensus        86 -~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s  164 (323)
T KOG0322|consen   86 -YSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGS  164 (323)
T ss_pred             -CcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccc
Confidence             21110000                         00                          00112344444322 222


Q ss_pred             --eEEEeeCCCeEEEEEeecCCCceEEE----------------------------------------------------
Q psy11529        115 --KFAAGSGARLISVCYFESENDWWVAK----------------------------------------------------  140 (244)
Q Consensus       115 --~l~~~~~d~~i~i~d~~~~~~~~~~~----------------------------------------------------  140 (244)
                        ++++|.++|.+.+||+.++.......                                                    
T Consensus       165 ~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~  244 (323)
T KOG0322|consen  165 TFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIR  244 (323)
T ss_pred             eEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCccccc
Confidence              46778889999999998863200000                                                    


Q ss_pred             eeecCCCCceeEEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEec
Q psy11529        141 HIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSK  220 (244)
Q Consensus       141 ~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  220 (244)
                      ....-.+..+..+..-||++.+|+++.|++|+||..                  ++.+++..+.-|   ...|.+++|+|
T Consensus       245 ~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVysw------------------rtl~pLAVLkyH---sagvn~vAfsp  303 (323)
T KOG0322|consen  245 KEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSW------------------RTLNPLAVLKYH---SAGVNAVAFSP  303 (323)
T ss_pred             ceEEecCCCccceEEccCCcEEeecccCCcEEEEEe------------------ccCCchhhhhhh---hcceeEEEeCC
Confidence            000000235677888899999999999999999999                  778999999999   99999999999


Q ss_pred             CCCEEEEeeCCCcEEEEeC
Q psy11529        221 DGNKLCWTSHDGSINVRMS  239 (244)
Q Consensus       221 ~~~~l~~~~~dg~i~vwd~  239 (244)
                      +..++|+++.|+.|.+|++
T Consensus       304 d~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  304 DCELMAAASKDARISLWKL  322 (323)
T ss_pred             CCchhhhccCCceEEeeec
Confidence            9999999999999999986

>KOG1587|consensus

Probab=99.86  E-value=2.1e-19  Score=140.16  Aligned_cols=212  Identities=15%  Similarity=0.150  Sum_probs=154.2

Q ss_pred             CCCceEEEEEcC-CCCeEEEecCCCeEEEeeeccCCCc--ceeeeeeccCCCceEEEEeCCCC--CeEEEEeCCccEEEE
Q psy11529          8 GINPVTTHAWNN-TRQQLAFTPNNQEVHLYQYEKAAND--WSQLDVLDGHDLKVTGIDWAPNT--NRIVTCSADRNAYVW   82 (244)
Q Consensus         8 ~~~~v~~~~~~~-~~~~l~~~~~d~~v~v~~~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~d~~i~iw   82 (244)
                      ...+|+|+.|+| +..+++.|..+|+|.+||+......  .........|..++..+.|-.+.  .-+++++.||.|..|
T Consensus       241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W  320 (555)
T KOG1587|consen  241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSW  320 (555)
T ss_pred             cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeee
Confidence            378999999999 5667888889999999999773221  11122234588999999997744  449999999999999


Q ss_pred             eeeCCC-------------------------------------------CCc----------------eeeEEEeccCcc
Q psy11529         83 TQNNDD-------------------------------------------KKW----------------KPTLVLLRINRA  103 (244)
Q Consensus        83 d~~~~~-------------------------------------------~~~----------------~~~~~~~~~~~~  103 (244)
                      +++.-.                                           |..                ........|.+.
T Consensus       321 ~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~  400 (555)
T KOG1587|consen  321 DTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGP  400 (555)
T ss_pred             eccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcc
Confidence            965100                                           000                000112235678


Q ss_pred             eEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCC-CEEEEeeCCCeEEEEEeeecccc
Q psy11529        104 ATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNN-HLLGCGSTDFKVRVFSAYIKDIE  182 (244)
Q Consensus       104 v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~l~~~~~dg~i~i~d~~~~~~~  182 (244)
                      |+++.++|-+..++..+.|.+++||.-.....   +......+...+++++|||.. ..++++..+|.|.+||+...   
T Consensus       401 v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~---Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~---  474 (555)
T KOG1587|consen  401 VYAVSRNPFYPKNFLSVGDWTVRIWSEDVIAS---PLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQD---  474 (555)
T ss_pred             eEeeecCCCccceeeeeccceeEeccccCCCC---cchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhcc---
Confidence            89999999876666555699999998873332   244445555679999999966 58888899999999999543   


Q ss_pred             cCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCC
Q psy11529        183 SAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQ  241 (244)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~  241 (244)
                                   ...++.+...+   ....+.+.|+++|+.|+.|...|.+.+|++..
T Consensus       475 -------------~~~Pv~s~~~~---~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~  517 (555)
T KOG1587|consen  475 -------------DEEPVLSQKVC---SPALTRVRWSPNGKLLAVGDANGTTHILKLSE  517 (555)
T ss_pred             -------------ccCCccccccc---ccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence                         23445555444   56678889999999999999999999999963

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.85  E-value=7.3e-18  Score=127.56  Aligned_cols=208  Identities=9%  Similarity=0.029  Sum_probs=136.3

Q ss_pred             ceEEEEEcCCCCeEEEecC-CCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEe-CCccEEEEeeeCCC
Q psy11529         11 PVTTHAWNNTRQQLAFTPN-NQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCS-ADRNAYVWTQNNDD   88 (244)
Q Consensus        11 ~v~~~~~~~~~~~l~~~~~-d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~   88 (244)
                      ....++|+|++++|++++. ++.|.+|+++..+........+. +.....+++++|+++++++++ .++.|.+||+  .+
T Consensus        81 ~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~--~~  157 (330)
T PRK11028         81 SPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTL--SD  157 (330)
T ss_pred             CceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEE--CC
Confidence            4568999999998887764 78999999964211112222333 334467788999999886554 5799999994  43


Q ss_pred             -CCcee----eEEEeccCcceEEEEECCCCCeEEEeeC-CCeEEEEEeecCCCceEEEeeec--C----CCCceeEEEec
Q psy11529         89 -KKWKP----TLVLLRINRAATCVKWSPLENKFAAGSG-ARLISVCYFESENDWWVAKHIKK--P----IKSTITCLDWH  156 (244)
Q Consensus        89 -~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~i~d~~~~~~~~~~~~~~~--~----~~~~v~~~~~~  156 (244)
                       +....    .... ........++|+|+++++++++. ++.|.+|+++.............  +    .......+.++
T Consensus       158 ~g~l~~~~~~~~~~-~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~  236 (330)
T PRK11028        158 DGHLVAQEPAEVTT-VEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHIT  236 (330)
T ss_pred             CCcccccCCCceec-CCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEEC
Confidence             32211    1111 12345678999999999988876 89999999985321111111111  1    11234468999


Q ss_pred             CCCCEEEEeeC-CCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeC-CCcE
Q psy11529        157 PNNHLLGCGST-DFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSH-DGSI  234 (244)
Q Consensus       157 p~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i  234 (244)
                      |++++++++.. ++.|.+|++....              ...+.+.....    ......++++|||++|+++.. +++|
T Consensus       237 pdg~~lyv~~~~~~~I~v~~i~~~~--------------~~~~~~~~~~~----~~~p~~~~~~~dg~~l~va~~~~~~v  298 (330)
T PRK11028        237 PDGRHLYACDRTASLISVFSVSEDG--------------SVLSFEGHQPT----ETQPRGFNIDHSGKYLIAAGQKSHHI  298 (330)
T ss_pred             CCCCEEEEecCCCCeEEEEEEeCCC--------------CeEEEeEEEec----cccCCceEECCCCCEEEEEEccCCcE
Confidence            99999888754 6899999984211              01122232222    234567899999999987775 8999


Q ss_pred             EEEeCC
Q psy11529        235 NVRMSQ  240 (244)
Q Consensus       235 ~vwd~~  240 (244)
                      .+|+++
T Consensus       299 ~v~~~~  304 (330)
T PRK11028        299 SVYEID  304 (330)
T ss_pred             EEEEEc
Confidence            999874

>KOG0268|consensus

Probab=99.85  E-value=8.3e-21  Score=135.66  Aligned_cols=163  Identities=20%  Similarity=0.340  Sum_probs=127.1

Q ss_pred             EEeCCCceEEEEEcCC-CCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEe
Q psy11529          5 YSFGINPVTTHAWNNT-RQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWT   83 (244)
Q Consensus         5 ~~~~~~~v~~~~~~~~-~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd   83 (244)
                      ++.+.+.|.++.|+|. ...|++++.|+.|.+||+..  .  .++..+. -+..-+.++|+|++-.|++|+.|..++.||
T Consensus       183 mswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~--~--~Pl~KVi-~~mRTN~IswnPeafnF~~a~ED~nlY~~D  257 (433)
T KOG0268|consen  183 MSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQ--A--SPLKKVI-LTMRTNTICWNPEAFNFVAANEDHNLYTYD  257 (433)
T ss_pred             eecCCCceeEEecCCCcchheeeeccCCceEEEeccc--C--Cccceee-eeccccceecCccccceeeccccccceehh
Confidence            3445678899999995 45778888999999999987  3  3444333 244557899999888899999999999999


Q ss_pred             eeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEE
Q psy11529         84 QNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLG  163 (244)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~  163 (244)
                      +  +.-. .+.....+|.+.|.+++|+|.|+.+++|+.|.+|+||..+.+..   .......--..|.++.|+-|.++++
T Consensus       258 m--R~l~-~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~S---RdiYhtkRMq~V~~Vk~S~Dskyi~  331 (433)
T KOG0268|consen  258 M--RNLS-RPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHS---RDIYHTKRMQHVFCVKYSMDSKYII  331 (433)
T ss_pred             h--hhhc-ccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcc---hhhhhHhhhheeeEEEEeccccEEE
Confidence            5  3322 12334467889999999999999999999999999999887754   1111111225799999999999999


Q ss_pred             EeeCCCeEEEEEeee
Q psy11529        164 CGSTDFKVRVFSAYI  178 (244)
Q Consensus       164 ~~~~dg~i~i~d~~~  178 (244)
                      +|++|+.|++|..+.
T Consensus       332 SGSdd~nvRlWka~A  346 (433)
T KOG0268|consen  332 SGSDDGNVRLWKAKA  346 (433)
T ss_pred             ecCCCcceeeeecch
Confidence            999999999999753

>KOG4378|consensus

Probab=99.85  E-value=2.6e-19  Score=133.11  Aligned_cols=184  Identities=11%  Similarity=0.106  Sum_probs=147.6

Q ss_pred             eCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccC-CCceEEEEeCCCCC-eEEEEeCCccEEEEee
Q psy11529          7 FGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGH-DLKVTGIDWAPNTN-RIVTCSADRNAYVWTQ   84 (244)
Q Consensus         7 ~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~   84 (244)
                      -|++.|+++.++....+||+++..|.|.|-.+.+  +  .....+... ...|.-+.|+|..+ +|.+++++|.|.+|| 
T Consensus       119 dh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t--~--~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwD-  193 (673)
T KOG4378|consen  119 DHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKT--K--QKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWD-  193 (673)
T ss_pred             CCcceeEEEEecCCcceeEEeccCCcEEEEeccc--C--ccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEe-
Confidence            3578999999999999999999999999999987  3  334444432 34567899999665 566789999999999 


Q ss_pred             eCCCCCceeeEEEeccCcceEEEEECCC-CCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEE
Q psy11529         85 NNDDKKWKPTLVLLRINRAATCVKWSPL-ENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLG  163 (244)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~  163 (244)
                       ........ .....|..+...|+|+|. ..+|++.+.|..|.+||+.....     ........+.+.++|+++|.+|+
T Consensus       194 -v~g~sp~~-~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s-----~~~l~y~~Plstvaf~~~G~~L~  266 (673)
T KOG4378|consen  194 -VQGMSPIF-HASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQAS-----TDRLTYSHPLSTVAFSECGTYLC  266 (673)
T ss_pred             -ccCCCccc-chhhhccCCcCcceecCCccceEEEecccceEEEeecccccc-----cceeeecCCcceeeecCCceEEE
Confidence             55444322 233568899999999996 56688899999999999997654     22222346889999999999999


Q ss_pred             EeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCC
Q psy11529        164 CGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDG  222 (244)
Q Consensus       164 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~  222 (244)
                      .|+..|.|..||+|                 ....++..+..|   ...|++++|-|.-
T Consensus       267 aG~s~G~~i~YD~R-----------------~~k~Pv~v~sah---~~sVt~vafq~s~  305 (673)
T KOG4378|consen  267 AGNSKGELIAYDMR-----------------STKAPVAVRSAH---DASVTRVAFQPSP  305 (673)
T ss_pred             eecCCceEEEEecc-----------------cCCCCceEeeec---ccceeEEEeeecc
Confidence            99999999999997                 567788888888   8889999998764

>KOG4227|consensus

Probab=99.85  E-value=2.2e-19  Score=130.19  Aligned_cols=167  Identities=10%  Similarity=0.073  Sum_probs=129.5

Q ss_pred             CCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCC--Ccceeeeeec-cCCCceEEEEeCCCCCeEEEEeCCccEEEEee
Q psy11529          8 GINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAA--NDWSQLDVLD-GHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQ   84 (244)
Q Consensus         8 ~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~--~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~   84 (244)
                      |.+-|.++.|+.++++|++|+.|..+++|+++...  ...+++.... .|...|.|++|.....++++|..+++|.+.| 
T Consensus        55 H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HD-  133 (609)
T KOG4227|consen   55 HTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHD-  133 (609)
T ss_pred             hccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeee-
Confidence            57889999999999999999999999999986410  1113333332 2558999999999889999999999999999 


Q ss_pred             eCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCC-CEEE
Q psy11529         85 NNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNN-HLLG  163 (244)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~l~  163 (244)
                       +++.+.+....-....+.|+.+..+|..+.|++.+.++.|.+||.+...... ..............+.|+|.. .+|+
T Consensus       134 -iEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~-~~~~~AN~~~~F~t~~F~P~~P~Li~  211 (609)
T KOG4227|consen  134 -IETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPI-SLVLPANSGKNFYTAEFHPETPALIL  211 (609)
T ss_pred             -cccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCC-ceeeecCCCccceeeeecCCCceeEE
Confidence             7887754444434445689999999999999999999999999998775311 112222234567788999954 6888


Q ss_pred             EeeCCCeEEEEEee
Q psy11529        164 CGSTDFKVRVFSAY  177 (244)
Q Consensus       164 ~~~~dg~i~i~d~~  177 (244)
                      +.+..+-+-+||.+
T Consensus       212 ~~~~~~G~~~~D~R  225 (609)
T KOG4227|consen  212 VNSETGGPNVFDRR  225 (609)
T ss_pred             eccccCCCCceeec
Confidence            88888889999985

>KOG2110|consensus

Probab=99.84  E-value=4.2e-18  Score=122.18  Aligned_cols=188  Identities=16%  Similarity=0.213  Sum_probs=141.8

Q ss_pred             CeEEEecC--CCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCCCCCceeeEEEe-
Q psy11529         22 QQLAFTPN--NQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLL-   98 (244)
Q Consensus        22 ~~l~~~~~--d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-   98 (244)
                      .++|..+.  -..+++++.+.  +  ..+..+. ....|.++.++  .++|+.+-.+ .|+|||  +++-+....+... 
T Consensus        57 SLvaiV~~~qpr~Lkv~~~Kk--~--~~ICe~~-fpt~IL~VrmN--r~RLvV~Lee-~IyIyd--I~~MklLhTI~t~~  126 (391)
T KOG2110|consen   57 SLVAIVSIKQPRKLKVVHFKK--K--TTICEIF-FPTSILAVRMN--RKRLVVCLEE-SIYIYD--IKDMKLLHTIETTP  126 (391)
T ss_pred             ceeEEEecCCCceEEEEEccc--C--ceEEEEe-cCCceEEEEEc--cceEEEEEcc-cEEEEe--cccceeehhhhccC
Confidence            34444433  24577888766  3  3344444 46788888887  4567766554 599999  6776655554433 


Q ss_pred             ccCcceEEEEECCCCCeEEEe--eCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEeeCCCe-EEEEE
Q psy11529         99 RINRAATCVKWSPLENKFAAG--SGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFK-VRVFS  175 (244)
Q Consensus        99 ~~~~~v~~~~~~~~~~~l~~~--~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~-i~i~d  175 (244)
                      .+...+.++.+++.+.++|.=  ...|.|.+||..+-+.    ......|++.+.+++|+++|.+|||+++.|+ ||||.
T Consensus       127 ~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~----v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~  202 (391)
T KOG2110|consen  127 PNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQP----VNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFS  202 (391)
T ss_pred             CCccceEeeccCCCCceEEecCCCCCceEEEEEccccee----eeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEE
Confidence            345557777777777788874  3478999999988765    5566799999999999999999999999996 89999


Q ss_pred             eeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCCC
Q psy11529        176 AYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQV  242 (244)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~  242 (244)
                      +                  ..++.+.+|+..-. ...|.+++|+||+++|++.|..++|++|.+++.
T Consensus       203 v------------------~~G~kl~eFRRG~~-~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~  250 (391)
T KOG2110|consen  203 V------------------PEGQKLYEFRRGTY-PVSIYSLSFSPDSQFLAASSNTETVHIFKLEKV  250 (391)
T ss_pred             c------------------CCccEeeeeeCCce-eeEEEEEEECCCCCeEEEecCCCeEEEEEeccc
Confidence            9                  78999999875311 346889999999999999999999999998764

>KOG1310|consensus

Probab=99.84  E-value=2.2e-19  Score=135.11  Aligned_cols=230  Identities=13%  Similarity=0.125  Sum_probs=156.3

Q ss_pred             EeCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeee-eccCCCceEEEEeCC--CCCeEEEEeCCccEEEE
Q psy11529          6 SFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDV-LDGHDLKVTGIDWAP--NTNRIVTCSADRNAYVW   82 (244)
Q Consensus         6 ~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~iw   82 (244)
                      +-|++-|.|++|+.+|.+|++|+.|-.+.|||.-.  .  ++++. -.+|...|.+++|-|  +.+.+++|..|..|+++
T Consensus        47 ~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~--~--KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lf  122 (758)
T KOG1310|consen   47 TGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFE--Y--KLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLF  122 (758)
T ss_pred             ccccceecceeecCCCCEEeecCCcceEEeecchh--c--ceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEE
Confidence            45789999999999999999999999999999864  2  44444 468999999999999  56688899999999999


Q ss_pred             eeeCC------CCCceeeEEEeccCcceEEEEECCCC-CeEEEeeCCCeEEEEEeecCCCceEEEeee---------cCC
Q psy11529         83 TQNND------DKKWKPTLVLLRINRAATCVKWSPLE-NKFAAGSGARLISVCYFESENDWWVAKHIK---------KPI  146 (244)
Q Consensus        83 d~~~~------~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---------~~~  146 (244)
                      |++-.      .+..........|...|..++-.|++ +.+.+++.||+++-+|++....   +....         .+.
T Consensus       123 dl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~---c~p~~~~~~~l~ny~~~  199 (758)
T KOG1310|consen  123 DLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHV---CNPDEDCPSILVNYNPQ  199 (758)
T ss_pred             ecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCcc---CCccccccHHHHHhchh
Confidence            95210      11122233334577888999999987 7899999999999999988543   11111         111


Q ss_pred             CCceeEEEecCCC-CEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCC------C---CCCeEEE
Q psy11529        147 KSTITCLDWHPNN-HLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSS------G---GGWIHSV  216 (244)
Q Consensus       147 ~~~v~~~~~~p~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~---~~~v~~~  216 (244)
                      --...++..+|.. .+|++|+.|-..++||.|.....................++..+...+-      .   -..++-+
T Consensus       200 lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~v  279 (758)
T KOG1310|consen  200 LIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYV  279 (758)
T ss_pred             hheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEE
Confidence            2356789999955 5899999999999999643221111111100000111122222211100      0   1125678


Q ss_pred             EEecCCCEEEEeeCCCcEEEEeCCCC
Q psy11529        217 AFSKDGNKLCWTSHDGSINVRMSQQV  242 (244)
Q Consensus       217 ~~s~~~~~l~~~~~dg~i~vwd~~~~  242 (244)
                      +|+|+|.-|+..-....|+++|+...
T Consensus       280 tfnpNGtElLvs~~gEhVYlfdvn~~  305 (758)
T KOG1310|consen  280 TFNPNGTELLVSWGGEHVYLFDVNED  305 (758)
T ss_pred             EECCCCcEEEEeeCCeEEEEEeecCC
Confidence            99999987666655668999998764

>KOG1188|consensus

Probab=99.84  E-value=1.1e-19  Score=128.94  Aligned_cols=230  Identities=13%  Similarity=0.101  Sum_probs=159.3

Q ss_pred             eEEeCCCceEEEEEcC--CCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCC-CceEEEEeCCCCCeEEEEeC----C
Q psy11529          4 VYSFGINPVTTHAWNN--TRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHD-LKVTGIDWAPNTNRIVTCSA----D   76 (244)
Q Consensus         4 ~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~----d   76 (244)
                      .+..++..+..++|..  ....+.+|+.||+|++||++..+.  .....+.++. .+-.+++.+-.++.++.|+.    +
T Consensus        65 ~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e--~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~  142 (376)
T KOG1188|consen   65 EFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAE--SARISWTQQSGTPFICLDLNCKKNIIACGTELTRSD  142 (376)
T ss_pred             eecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchh--hhheeccCCCCCcceEeeccCcCCeEEeccccccCc
Confidence            3455577788888877  456788999999999999977322  4555566665 56677777767778887753    6


Q ss_pred             ccEEEEeeeCCCCCceeeEEEeccCcceEEEEECCC-CCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEe
Q psy11529         77 RNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPL-ENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDW  155 (244)
Q Consensus        77 ~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~  155 (244)
                      -.+.+||+  +..+.........|...|+++.|+|. .++|++|+.||.+.+||++.......+ .....+...|..+.|
T Consensus       143 A~v~lwDv--R~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL-~~viN~~sSI~~igw  219 (376)
T KOG1188|consen  143 ASVVLWDV--RSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDAL-LHVINHGSSIHLIGW  219 (376)
T ss_pred             eEEEEEEe--ccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhH-HHhhcccceeeeeee
Confidence            78999995  44432122233568999999999996 688999999999999999876431112 222334567999999


Q ss_pred             cCCC-CEEEEeeCCCeEEEEEeeecccccCCCCC------------------------------CCC-------------
Q psy11529        156 HPNN-HLLGCGSTDFKVRVFSAYIKDIESAPQST------------------------------NWG-------------  191 (244)
Q Consensus       156 ~p~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~------------------------------~~~-------------  191 (244)
                      ..++ +.|.+-+......+|++...+.+......                              ..+             
T Consensus       220 ~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~  299 (376)
T KOG1188|consen  220 LSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDT  299 (376)
T ss_pred             ecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeec
Confidence            9887 45777788899999999644321110000                              000             


Q ss_pred             ccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCC
Q psy11529        192 SKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQ  240 (244)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~  240 (244)
                      ......+....+.+++  ...|+++.|...+..+.+|++||.+.+|..+
T Consensus       300 ~s~~~~~~~a~l~g~~--~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~~  346 (376)
T KOG1188|consen  300 SSGSLLTEPAILQGGH--EEIVRDILFDVKNDVLYTGGEDGLLQAWKVE  346 (376)
T ss_pred             ccccccCccccccCCc--HHHHHHHhhhcccceeeccCCCceEEEEecC
Confidence            0122233344455533  6678888898888899999999999999853

>KOG1034|consensus

Probab=99.84  E-value=1.4e-18  Score=123.01  Aligned_cols=165  Identities=11%  Similarity=0.098  Sum_probs=126.3

Q ss_pred             CCCceEEEEEcC-----CCCeEEEecCCCeEEEeeeccCCCcceeeeeec--cCCCceEEEEeCCC----CCeEEEEeCC
Q psy11529          8 GINPVTTHAWNN-----TRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLD--GHDLKVTGIDWAPN----TNRIVTCSAD   76 (244)
Q Consensus         8 ~~~~v~~~~~~~-----~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~----~~~l~~~~~d   76 (244)
                      |..+|..++|++     +-..+|+++ .+.+.+|....+. ....++.+.  .|++....++|+-+    ..++|.++.-
T Consensus        37 ~~~~I~gv~fN~~~~~~e~~vfatvG-~~rvtiy~c~~d~-~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~~  114 (385)
T KOG1034|consen   37 HNKPIFGVAFNSFLGCDEPQVFATVG-GNRVTIYECPGDG-GIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGYL  114 (385)
T ss_pred             CCCccceeeeehhcCCCCCceEEEeC-CcEEEEEEECCcc-ceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecce
Confidence            468899999985     234566665 4689999987632 123333332  36677777888652    3478888899


Q ss_pred             ccEEEEeeeCCCCCceeeEEEeccCcceEEEEECCC-CCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEe
Q psy11529         77 RNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPL-ENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDW  155 (244)
Q Consensus        77 ~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~  155 (244)
                      |.|+|.|  +.++++..  .+.+|...|+.+.++|+ .+++++++.|..|++|++++....- ..--..+|...|.+++|
T Consensus       115 GvIrVid--~~~~~~~~--~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~-VfGG~egHrdeVLSvD~  189 (385)
T KOG1034|consen  115 GVIRVID--VVSGQCSK--NYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVA-VFGGVEGHRDEVLSVDF  189 (385)
T ss_pred             eEEEEEe--cchhhhcc--ceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEE-EecccccccCcEEEEEE
Confidence            9999999  67776443  34679999999999997 5789999999999999999987511 11223568899999999


Q ss_pred             cCCCCEEEEeeCCCeEEEEEeeec
Q psy11529        156 HPNNHLLGCGSTDFKVRVFSAYIK  179 (244)
Q Consensus       156 ~p~~~~l~~~~~dg~i~i~d~~~~  179 (244)
                      +++|.+|++++.|.+|++|++...
T Consensus       190 ~~~gd~i~ScGmDhslk~W~l~~~  213 (385)
T KOG1034|consen  190 SLDGDRIASCGMDHSLKLWRLNVK  213 (385)
T ss_pred             cCCCCeeeccCCcceEEEEecChh
Confidence            999999999999999999999633

>KOG0650|consensus

Probab=99.84  E-value=1.3e-19  Score=137.42  Aligned_cols=208  Identities=15%  Similarity=0.182  Sum_probs=161.4

Q ss_pred             CCCceEEEEEcCCCCeEEEecC---CCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEee
Q psy11529          8 GINPVTTHAWNNTRQQLAFTPN---NQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQ   84 (244)
Q Consensus         8 ~~~~v~~~~~~~~~~~l~~~~~---d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~   84 (244)
                      |..+|..+.|+..|.+|++...   ...|.|.++..  .  .....|....+.|.++.|+|...+|+.++ ...|+||| 
T Consensus       520 ~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK--~--~sQ~PF~kskG~vq~v~FHPs~p~lfVaT-q~~vRiYd-  593 (733)
T KOG0650|consen  520 HPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSK--R--KSQSPFRKSKGLVQRVKFHPSKPYLFVAT-QRSVRIYD-  593 (733)
T ss_pred             cCCccceeeeecCCceEEEeccCCCcceEEEEeccc--c--cccCchhhcCCceeEEEecCCCceEEEEe-ccceEEEe-
Confidence            5789999999999999998743   46799999976  3  33345555678899999999888888876 56899999 


Q ss_pred             eCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEE
Q psy11529         85 NNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGC  164 (244)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~  164 (244)
                       +..+.....  +......+..++.+|.|..|+.++.|+.+..||++-...   .......|...+++++|++.-.++++
T Consensus       594 -L~kqelvKk--L~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlssk---Pyk~lr~H~~avr~Va~H~ryPLfas  667 (733)
T KOG0650|consen  594 -LSKQELVKK--LLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSK---PYKTLRLHEKAVRSVAFHKRYPLFAS  667 (733)
T ss_pred             -hhHHHHHHH--HhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcc---hhHHhhhhhhhhhhhhhccccceeee
Confidence             555543332  334567899999999999999999999999999988765   44556678899999999999999999


Q ss_pred             eeCCCeEEEEEeeec-ccccCCCCCCCCccccccceeEEecCCCC-CCCCeEEEEEecCCCEEEEeeCCCcEEEE
Q psy11529        165 GSTDFKVRVFSAYIK-DIESAPQSTNWGSKSTLGNCLVELNNSSS-GGGWIHSVAFSKDGNKLCWTSHDGSINVR  237 (244)
Q Consensus       165 ~~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~vw  237 (244)
                      |+.||++.||.-+.. ++...          ..--++..+.+|.. ....|..+.|+|...+|++++.||+|++|
T Consensus       668 ~sdDgtv~Vfhg~VY~Dl~qn----------pliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf  732 (733)
T KOG0650|consen  668 GSDDGTVIVFHGMVYNDLLQN----------PLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF  732 (733)
T ss_pred             ecCCCcEEEEeeeeehhhhcC----------CceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence            999999999875321 11100          11234566667621 02348889999999999999999999998

>KOG1273|consensus

Probab=99.84  E-value=1.3e-18  Score=122.58  Aligned_cols=222  Identities=17%  Similarity=0.226  Sum_probs=153.8

Q ss_pred             eEEeCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCC-CCeEEEEeCCccEEEE
Q psy11529          4 VYSFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPN-TNRIVTCSADRNAYVW   82 (244)
Q Consensus         4 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~iw   82 (244)
                      .+..|-.+|++++||+||+.|++++.|..+.+||+..  +  .+++.+. ...+|+.+.|+|. .+..++.-.+..-.+-
T Consensus        60 ~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~--g--s~l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi  134 (405)
T KOG1273|consen   60 MLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLK--G--SPLKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVI  134 (405)
T ss_pred             hhhccccceeEEEecCCCCEeeeecCCceeEEEeccC--C--CceeEEE-ccCccceeeeccccCCeEEEEEecCCcEEE
Confidence            3456789999999999999999999999999999977  5  5666666 6889999999994 3344433334445555


Q ss_pred             eeeCCCCCceeeEEEec----cCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCC-CCceeEEEecC
Q psy11529         83 TQNNDDKKWKPTLVLLR----INRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPI-KSTITCLDWHP  157 (244)
Q Consensus        83 d~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~-~~~v~~~~~~p  157 (244)
                      +  +.+...  ......    .+....+..|.+.|+++++|...|.+.++|.++.+.    .....-. ...|..+.++.
T Consensus       135 ~--~s~~~h--~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~----vas~rits~~~IK~I~~s~  206 (405)
T KOG1273|consen  135 D--FSDPKH--SVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLEC----VASFRITSVQAIKQIIVSR  206 (405)
T ss_pred             E--ecCCce--eeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchhee----eeeeeechheeeeEEEEec
Confidence            5  333221  111111    122234456899999999999999999999988765    2222222 36788999999


Q ss_pred             CCCEEEEeeCCCeEEEEEeeecccccCCC-------------CCCCCc-----------------------cccccceeE
Q psy11529        158 NNHLLGCGSTDFKVRVFSAYIKDIESAPQ-------------STNWGS-----------------------KSTLGNCLV  201 (244)
Q Consensus       158 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-------------~~~~~~-----------------------~~~~~~~~~  201 (244)
                      .|+.|+..+.|..|+.|+++.-.......             ...|..                       ....|.++.
T Consensus       207 ~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVK  286 (405)
T KOG1273|consen  207 KGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVK  286 (405)
T ss_pred             cCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceee
Confidence            99999999999999999986222111000             000100                       234556666


Q ss_pred             EecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCC
Q psy11529        202 ELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQ  241 (244)
Q Consensus       202 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~  241 (244)
                      .+.+..  +.....+.|+|-...+++- ..|.+++|....
T Consensus       287 ILhG~k--gE~l~DV~whp~rp~i~si-~sg~v~iw~~~~  323 (405)
T KOG1273|consen  287 ILHGTK--GEELLDVNWHPVRPIIASI-ASGVVYIWAVVQ  323 (405)
T ss_pred             eecCCc--hhheeecccccceeeeeec-cCCceEEEEeec
Confidence            666652  3567788999988888877 788999998754

>KOG0290|consensus

Probab=99.84  E-value=1.1e-18  Score=121.60  Aligned_cols=204  Identities=11%  Similarity=0.189  Sum_probs=149.9

Q ss_pred             CCceEEEEEcC-CCCeEEEecCCCeEEEeeeccCCC-cceeeeeeccCCCceEEEEeCCCC-CeEEEEeCCccEEEEeee
Q psy11529          9 INPVTTHAWNN-TRQQLAFTPNNQEVHLYQYEKAAN-DWSQLDVLDGHDLKVTGIDWAPNT-NRIVTCSADRNAYVWTQN   85 (244)
Q Consensus         9 ~~~v~~~~~~~-~~~~l~~~~~d~~v~v~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~   85 (244)
                      ..++++..|+. |-++|.+++-|.+..|||++.  + .......+.+|...|..++|...+ +.||+.+.||.++++|  
T Consensus       150 ~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~--~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFD--  225 (364)
T KOG0290|consen  150 CAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIET--GVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFD--  225 (364)
T ss_pred             CCcccccccccCCcceeEeecccCeEEEEEEee--ccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEE--
Confidence            57899999987 778999999999999999987  3 113445677899999999999854 4788999999999999  


Q ss_pred             CCCCCceeeEEEecc-CcceEEEEECCC-CCeEEEeeC-CCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCC-CE
Q psy11529         86 NDDKKWKPTLVLLRI-NRAATCVKWSPL-ENKFAAGSG-ARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNN-HL  161 (244)
Q Consensus        86 ~~~~~~~~~~~~~~~-~~~v~~~~~~~~-~~~l~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~  161 (244)
                      ++..+-...+..... ..+...++|++. .+++|+-.. ...|.|.|++....   .......|.+.|+.++|.|.. ..
T Consensus       226 LR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~t---pva~L~~H~a~VNgIaWaPhS~~h  302 (364)
T KOG0290|consen  226 LRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCT---PVARLRNHQASVNGIAWAPHSSSH  302 (364)
T ss_pred             ecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCc---ceehhhcCcccccceEecCCCCce
Confidence            454432222221222 456788999875 567777544 56799999998765   566778899999999999954 69


Q ss_pred             EEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEec-CCCEEEEeeCCCcEEE
Q psy11529        162 LGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSK-DGNKLCWTSHDGSINV  236 (244)
Q Consensus       162 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~v  236 (244)
                      |.++++|....+||+...-.+            ....++..+..    ++.|+.++|++ .+.+++.+. ++++.+
T Consensus       303 ictaGDD~qaliWDl~q~~~~------------~~~dPilay~a----~~EVNqi~Ws~~~~Dwiai~~-~kklei  361 (364)
T KOG0290|consen  303 ICTAGDDCQALIWDLQQMPRE------------NGEDPILAYTA----GGEVNQIQWSSSQPDWIAICF-GKKLEI  361 (364)
T ss_pred             eeecCCcceEEEEeccccccc------------CCCCchhhhhc----cceeeeeeecccCCCEEEEEe-cCeeeE
Confidence            999999999999999532211            11233444443    77899999997 556777665 344443

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.84  E-value=1.7e-17  Score=125.49  Aligned_cols=214  Identities=12%  Similarity=0.088  Sum_probs=138.4

Q ss_pred             CceEEEEEcCCCCeEEEec-CCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeC-CccEEEEeeeCC
Q psy11529         10 NPVTTHAWNNTRQQLAFTP-NNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSA-DRNAYVWTQNND   87 (244)
Q Consensus        10 ~~v~~~~~~~~~~~l~~~~-~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~   87 (244)
                      +....++++|++++|++++ .++.|.+|+++.. +.+....... ..+....++|+|+++++++++. ++.|.+|+++ .
T Consensus        35 ~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~-g~l~~~~~~~-~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~-~  111 (330)
T PRK11028         35 GQVQPMVISPDKRHLYVGVRPEFRVLSYRIADD-GALTFAAESP-LPGSPTHISTDHQGRFLFSASYNANCVSVSPLD-K  111 (330)
T ss_pred             CCCccEEECCCCCEEEEEECCCCcEEEEEECCC-CceEEeeeec-CCCCceEEEECCCCCEEEEEEcCCCeEEEEEEC-C
Confidence            5567889999999887664 4788999999631 3233333333 3345678999999999888764 8899999942 2


Q ss_pred             CCCceeeEEEeccCcceEEEEECCCCCeEEEee-CCCeEEEEEeecCCCceE--EEeeecCCCCceeEEEecCCCCEEEE
Q psy11529         88 DKKWKPTLVLLRINRAATCVKWSPLENKFAAGS-GARLISVCYFESENDWWV--AKHIKKPIKSTITCLDWHPNNHLLGC  164 (244)
Q Consensus        88 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~--~~~~~~~~~~~v~~~~~~p~~~~l~~  164 (244)
                      .+..........+...+..++++|+++++++++ .++.|.+||++.......  ......+.......+.|+|+|+++++
T Consensus       112 ~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv  191 (330)
T PRK11028        112 DGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYC  191 (330)
T ss_pred             CCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEE
Confidence            332211121122334567889999999886555 579999999987432110  00111122345678999999999988


Q ss_pred             eeC-CCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCC---CCCCCeEEEEEecCCCEEEEee-CCCcEEEEeC
Q psy11529        165 GST-DFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSS---SGGGWIHSVAFSKDGNKLCWTS-HDGSINVRMS  239 (244)
Q Consensus       165 ~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~s~~~~~l~~~~-~dg~i~vwd~  239 (244)
                      ++. +++|.+|++....              ...+.+..+....   ........+.++|++++|+++. .++.|.+|++
T Consensus       192 ~~~~~~~v~v~~~~~~~--------------~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i  257 (330)
T PRK11028        192 VNELNSSVDVWQLKDPH--------------GEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSV  257 (330)
T ss_pred             EecCCCEEEEEEEeCCC--------------CCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEE
Confidence            776 8999999994210              0111222222110   0022334689999999998885 4789999998


Q ss_pred             C
Q psy11529        240 Q  240 (244)
Q Consensus       240 ~  240 (244)
                      +
T Consensus       258 ~  258 (330)
T PRK11028        258 S  258 (330)
T ss_pred             e
Confidence            5

>KOG2110|consensus

Probab=99.83  E-value=3.6e-17  Score=117.47  Aligned_cols=218  Identities=11%  Similarity=0.117  Sum_probs=148.8

Q ss_pred             CCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeecc---CCCceEEEEeCCCCCeEEEE--eCCccEEEEe
Q psy11529          9 INPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDG---HDLKVTGIDWAPNTNRIVTC--SADRNAYVWT   83 (244)
Q Consensus         9 ~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~--~~d~~i~iwd   83 (244)
                      ..+|.++.++.  ++|+++-. ..|+|||+.+  -  +.+.++..   +...+.++.+++.+.+++.=  ...|.|.+||
T Consensus        87 pt~IL~VrmNr--~RLvV~Le-e~IyIydI~~--M--klLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d  159 (391)
T KOG2110|consen   87 PTSILAVRMNR--KRLVVCLE-ESIYIYDIKD--M--KLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFD  159 (391)
T ss_pred             CCceEEEEEcc--ceEEEEEc-ccEEEEeccc--c--eeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEE
Confidence            45666777654  46777665 4599999987  2  56666543   45557677777777788853  3378999999


Q ss_pred             eeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCe-EEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEE
Q psy11529         84 QNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARL-ISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLL  162 (244)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~-i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l  162 (244)
                        ..+-+  +...+..|.+.+-+++|+++|.+||++++.|+ |||+.+..++..+..+.-..  ...|.+++|+|++++|
T Consensus       160 --~~nl~--~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~--~~~IySL~Fs~ds~~L  233 (391)
T KOG2110|consen  160 --TINLQ--PVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTY--PVSIYSLSFSPDSQFL  233 (391)
T ss_pred             --cccce--eeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCce--eeEEEEEEECCCCCeE
Confidence              55544  45566789999999999999999999999886 78999998887444333222  4689999999999999


Q ss_pred             EEeeCCCeEEEEEeeecccccCCCCCCCCc-------------------cccccceeEEecCCCCCCCCeEEEEEe--cC
Q psy11529        163 GCGSTDFKVRVFSAYIKDIESAPQSTNWGS-------------------KSTLGNCLVELNNSSSGGGWIHSVAFS--KD  221 (244)
Q Consensus       163 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~v~~~~~s--~~  221 (244)
                      ++.++.++|++|.+..........+..+..                   .....+.....+...  .+.-..+.+.  +.
T Consensus       234 ~~sS~TeTVHiFKL~~~~~~~~~~p~~~~~~~~~~sk~~~sylps~V~~~~~~~R~FAt~~l~~--s~~~~~~~l~~~~~  311 (391)
T KOG2110|consen  234 AASSNTETVHIFKLEKVSNNPPESPTAGTSWFGKVSKAATSYLPSQVSSVLDQSRKFATAKLPE--SGRKNICSLSSIQK  311 (391)
T ss_pred             EEecCCCeEEEEEecccccCCCCCCCCCCcccchhhhhhhhhcchhhhhhhhhccceeEEEccC--CCccceEEeeccCC
Confidence            999999999999996554332222222111                   001112222222220  1211334444  46


Q ss_pred             CCEEEEeeCCCcEEEEeCCC
Q psy11529        222 GNKLCWTSHDGSINVRMSQQ  241 (244)
Q Consensus       222 ~~~l~~~~~dg~i~vwd~~~  241 (244)
                      ...+..++.||.++.|.+.-
T Consensus       312 ~~~v~vas~dG~~y~y~l~~  331 (391)
T KOG2110|consen  312 IPRVLVASYDGHLYSYRLPP  331 (391)
T ss_pred             CCEEEEEEcCCeEEEEEcCC
Confidence            77899999999999998864

>KOG1009|consensus

Probab=99.83  E-value=4.5e-19  Score=128.50  Aligned_cols=165  Identities=22%  Similarity=0.362  Sum_probs=138.9

Q ss_pred             CCceEEEEeCCCCC-eEEEEeCCccEEEEeeeCC--CC---CceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEE
Q psy11529         55 DLKVTGIDWAPNTN-RIVTCSADRNAYVWTQNND--DK---KWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVC  128 (244)
Q Consensus        55 ~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~--~~---~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~  128 (244)
                      ..+|.++.|.++.. .+++|+.|..|++|.+...  .+   +......+..|...|+++.|+|+|..||+|+++|.+.+|
T Consensus        13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW   92 (434)
T KOG1009|consen   13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW   92 (434)
T ss_pred             CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence            56899999999666 9999999999999985211  11   223334556799999999999999999999999999999


Q ss_pred             Eee--------c----CCCceEEEeeecCCCCceeEEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccc
Q psy11529        129 YFE--------S----ENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTL  196 (244)
Q Consensus       129 d~~--------~----~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~  196 (244)
                      ...        +    .+..|........|...+..++|+|+++++++++.|..+++||+                  ..
T Consensus        93 k~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv------------------~~  154 (434)
T KOG1009|consen   93 KQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDV------------------HA  154 (434)
T ss_pred             EecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEe------------------cc
Confidence            876        2    12236667777789999999999999999999999999999999                  78


Q ss_pred             cceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCC
Q psy11529        197 GNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQ  240 (244)
Q Consensus       197 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~  240 (244)
                      ++....+..|   ...+..++|.|-++++++-+.|...+.+++.
T Consensus       155 G~l~~~~~dh---~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~  195 (434)
T KOG1009|consen  155 GQLLAILDDH---EHYVQGVAWDPLNQYVASKSSDRHPEGFSAK  195 (434)
T ss_pred             ceeEeecccc---ccccceeecchhhhhhhhhccCcccceeeee
Confidence            9999999999   9999999999999999999999876666554

>KOG1524|consensus

Probab=99.83  E-value=3.8e-19  Score=133.47  Aligned_cols=181  Identities=15%  Similarity=0.235  Sum_probs=142.6

Q ss_pred             eCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeC
Q psy11529          7 FGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNN   86 (244)
Q Consensus         7 ~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~   86 (244)
                      .|.+.|.+-.|+|||.-|+++++||.|++|...+     ....++.....+|.|++|.|+.+.++.+. .+.+.|=-  +
T Consensus       102 AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsG-----MLRStl~Q~~~~v~c~~W~p~S~~vl~c~-g~h~~IKp--L  173 (737)
T KOG1524|consen  102 AHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSG-----MLRSTVVQNEESIRCARWAPNSNSIVFCQ-GGHISIKP--L  173 (737)
T ss_pred             hhhhhhhhcccCCCCceeeeecCCceEEEEeccc-----hHHHHHhhcCceeEEEEECCCCCceEEec-CCeEEEee--c
Confidence            4667888999999999999999999999999887     66667777789999999999877666553 34566655  3


Q ss_pred             CCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEee
Q psy11529         87 DDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGS  166 (244)
Q Consensus        87 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~  166 (244)
                      ....  ..+.-..|.+-|.++.|++..+.+++|+.|-..+|||-....     .....+|..+|++++|+|+ +.++.++
T Consensus       174 ~~n~--k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~-----Lf~S~~~ey~ITSva~npd-~~~~v~S  245 (737)
T KOG1524|consen  174 AANS--KIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGAN-----LFTSAAEEYAITSVAFNPE-KDYLLWS  245 (737)
T ss_pred             cccc--ceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCcc-----cccCChhccceeeeeeccc-cceeeee
Confidence            3322  245567899999999999999999999999999999976653     3455677889999999999 6666655


Q ss_pred             CCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEE
Q psy11529        167 TDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINV  236 (244)
Q Consensus       167 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v  236 (244)
                      .. +++                              +....  .+.|..++||+||..++.|+..|.+.+
T Consensus       246 ~n-t~R------------------------------~~~p~--~GSifnlsWS~DGTQ~a~gt~~G~v~~  282 (737)
T KOG1524|consen  246 YN-TAR------------------------------FSSPR--VGSIFNLSWSADGTQATCGTSTGQLIV  282 (737)
T ss_pred             ee-eee------------------------------ecCCC--ccceEEEEEcCCCceeeccccCceEEE
Confidence            22 222                              11111  678999999999999999999887654

>KOG0649|consensus

Probab=99.83  E-value=4.5e-18  Score=115.91  Aligned_cols=203  Identities=14%  Similarity=0.140  Sum_probs=145.9

Q ss_pred             ceEEEEEcCCCCeEEEecCCCeEEEeeeccC----C--CcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEee
Q psy11529         11 PVTTHAWNNTRQQLAFTPNNQEVHLYQYEKA----A--NDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQ   84 (244)
Q Consensus        11 ~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~----~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~   84 (244)
                      .|.+-+|+|.+++|++|..+|+|.+..+...    +  .....+...++|+++|..++|.  ..+|++|+ ||.|+-|..
T Consensus        12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W   88 (325)
T KOG0649|consen   12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEW   88 (325)
T ss_pred             HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEeee
Confidence            4556689999999999999999999997531    0  1113445568899999999998  45677776 699998873


Q ss_pred             eCCCCC----cee--eEEEecc-----CcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEE
Q psy11529         85 NNDDKK----WKP--TLVLLRI-----NRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCL  153 (244)
Q Consensus        85 ~~~~~~----~~~--~~~~~~~-----~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~  153 (244)
                        ....    .+.  ....+.+     -..|+++-..|..+.++.++.|+.++-||+++++    ......+|...+.++
T Consensus        89 --~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~----i~r~~rGHtDYvH~v  162 (325)
T KOG0649|consen   89 --NEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGR----IQREYRGHTDYVHSV  162 (325)
T ss_pred             --hhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCE----EEEEEcCCcceeeee
Confidence              2211    111  1111112     2368899999998888888899999999999997    477889999999999


Q ss_pred             EecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCC-------CCCCeEEEEEecCCCEEE
Q psy11529        154 DWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSS-------GGGWIHSVAFSKDGNKLC  226 (244)
Q Consensus       154 ~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~v~~~~~s~~~~~l~  226 (244)
                      .--.....+++|++||++++||.                  ++++.+..+.....       ....|-+++.  +..+|+
T Consensus       163 v~R~~~~qilsG~EDGtvRvWd~------------------kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlv  222 (325)
T KOG0649|consen  163 VGRNANGQILSGAEDGTVRVWDT------------------KTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLV  222 (325)
T ss_pred             eecccCcceeecCCCccEEEEec------------------cccceeEEeccccChhhcCcccCceeEEEec--cCceEE
Confidence            88555567889999999999999                  45555544432100       0345555655  555887


Q ss_pred             EeeCCCcEEEEeCCCCC
Q psy11529        227 WTSHDGSINVRMSQQVL  243 (244)
Q Consensus       227 ~~~~dg~i~vwd~~~~~  243 (244)
                      .|+ ...+.+|.++...
T Consensus       223 CGg-Gp~lslwhLrsse  238 (325)
T KOG0649|consen  223 CGG-GPKLSLWHLRSSE  238 (325)
T ss_pred             ecC-CCceeEEeccCCC
Confidence            765 4579999998754

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.82  E-value=2.3e-17  Score=128.43  Aligned_cols=197  Identities=14%  Similarity=0.168  Sum_probs=129.1

Q ss_pred             CCCceEEEEEcCCCCeEEEec---CCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEE-eCCc--cEEE
Q psy11529          8 GINPVTTHAWNNTRQQLAFTP---NNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTC-SADR--NAYV   81 (244)
Q Consensus         8 ~~~~v~~~~~~~~~~~l~~~~---~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~--~i~i   81 (244)
                      +...+.+.+|+|||+.|+..+   .+..|++|++.+  ++.+.+..+.   +.+..++|+|||+.|+.. +.++  .|.+
T Consensus       197 ~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~--G~~~~l~~~~---~~~~~~~~SPDG~~La~~~~~~g~~~I~~  271 (429)
T PRK03629        197 SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLAN--GAVRQVASFP---RHNGAPAFSPDGSKLAFALSKTGSLNLYV  271 (429)
T ss_pred             CCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCC--CCeEEccCCC---CCcCCeEECCCCCEEEEEEcCCCCcEEEE
Confidence            356789999999999998754   245799999877  4333333333   334568999999988765 3344  5888


Q ss_pred             EeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeC-CCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCC
Q psy11529         82 WTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSG-ARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNH  160 (244)
Q Consensus        82 wd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~  160 (244)
                      ||  +.+++..   .+..+...+....|+|+|+.|+..+. ++...+|.++.....  .... ...........|+|||+
T Consensus       272 ~d--~~tg~~~---~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~--~~~l-t~~~~~~~~~~~SpDG~  343 (429)
T PRK03629        272 MD--LASGQIR---QVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGA--PQRI-TWEGSQNQDADVSSDGK  343 (429)
T ss_pred             EE--CCCCCEE---EccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCC--eEEe-ecCCCCccCEEECCCCC
Confidence            88  6776532   22334456788999999998887765 445566655433220  1121 22223456789999999


Q ss_pred             EEEEeeCC---CeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCc---E
Q psy11529        161 LLGCGSTD---FKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGS---I  234 (244)
Q Consensus       161 ~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~---i  234 (244)
                      +|+..+.+   ..|.+||+                  ..++. ..+..    ........|+|||++|+.++.++.   +
T Consensus       344 ~Ia~~~~~~g~~~I~~~dl------------------~~g~~-~~Lt~----~~~~~~p~~SpDG~~i~~~s~~~~~~~l  400 (429)
T PRK03629        344 FMVMVSSNGGQQHIAKQDL------------------ATGGV-QVLTD----TFLDETPSIAPNGTMVIYSSSQGMGSVL  400 (429)
T ss_pred             EEEEEEccCCCceEEEEEC------------------CCCCe-EEeCC----CCCCCCceECCCCCEEEEEEcCCCceEE
Confidence            88876543   35788887                  33332 22322    222346789999999998887764   6


Q ss_pred             EEEeCC
Q psy11529        235 NVRMSQ  240 (244)
Q Consensus       235 ~vwd~~  240 (244)
                      .++++.
T Consensus       401 ~~~~~~  406 (429)
T PRK03629        401 NLVSTD  406 (429)
T ss_pred             EEEECC
Confidence            777764

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.82  E-value=1.7e-17  Score=129.80  Aligned_cols=198  Identities=15%  Similarity=0.179  Sum_probs=132.7

Q ss_pred             EeCCCceEEEEEcCCCCeEEEecC---CCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEE-EEeCCcc--E
Q psy11529          6 SFGINPVTTHAWNNTRQQLAFTPN---NQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIV-TCSADRN--A   79 (244)
Q Consensus         6 ~~~~~~v~~~~~~~~~~~l~~~~~---d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~--i   79 (244)
                      +.+.+.+.+.+|+|||+.|++.+.   +..|++|++.+  +   ....+..+.+.+...+|+|||+.|+ +.+.++.  |
T Consensus       198 t~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~--g---~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~I  272 (435)
T PRK05137        198 TDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLET--G---QRELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDI  272 (435)
T ss_pred             ecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCC--C---cEEEeecCCCcccCcEECCCCCEEEEEEecCCCceE
Confidence            335678999999999999988753   46899999977  4   2234455666778899999999876 4455555  6


Q ss_pred             EEEeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeC-CC--eEEEEEeecCCCceEEEeeecCCCCceeEEEec
Q psy11529         80 YVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSG-AR--LISVCYFESENDWWVAKHIKKPIKSTITCLDWH  156 (244)
Q Consensus        80 ~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~--~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~  156 (244)
                      .+||  ..++..   ..+..+........|+|||+.|+..+. ++  .|.++|+..+..    .... .....+....|+
T Consensus       273 y~~d--~~~~~~---~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~----~~lt-~~~~~~~~~~~S  342 (435)
T PRK05137        273 YTMD--LRSGTT---TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNP----RRIS-FGGGRYSTPVWS  342 (435)
T ss_pred             EEEE--CCCCce---EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCe----EEee-cCCCcccCeEEC
Confidence            6667  666653   223345555678999999999887764 33  566667655433    2221 223456778999


Q ss_pred             CCCCEEEEeeCC---CeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCC--
Q psy11529        157 PNNHLLGCGSTD---FKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHD--  231 (244)
Q Consensus       157 p~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d--  231 (244)
                      |||+.|+....+   ..|.+||+.                  .+ ....+..    ...+..+.|+|||+.|+..+.+  
T Consensus       343 pdG~~ia~~~~~~~~~~i~~~d~~------------------~~-~~~~lt~----~~~~~~p~~spDG~~i~~~~~~~~  399 (435)
T PRK05137        343 PRGDLIAFTKQGGGQFSIGVMKPD------------------GS-GERILTS----GFLVEGPTWAPNGRVIMFFRQTPG  399 (435)
T ss_pred             CCCCEEEEEEcCCCceEEEEEECC------------------CC-ceEeccC----CCCCCCCeECCCCCEEEEEEccCC
Confidence            999998876643   357777762                  12 2222322    3346778999999988765543  


Q ss_pred             ----CcEEEEeCCC
Q psy11529        232 ----GSINVRMSQQ  241 (244)
Q Consensus       232 ----g~i~vwd~~~  241 (244)
                          ..+.++|+..
T Consensus       400 ~~~~~~L~~~dl~g  413 (435)
T PRK05137        400 SGGAPKLYTVDLTG  413 (435)
T ss_pred             CCCcceEEEEECCC
Confidence                2577777754

>KOG1524|consensus

Probab=99.82  E-value=2.8e-19  Score=134.15  Aligned_cols=171  Identities=18%  Similarity=0.353  Sum_probs=139.4

Q ss_pred             CeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCCCCCceeeEEEeccC
Q psy11529         22 QQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRIN  101 (244)
Q Consensus        22 ~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~  101 (244)
                      ..|+.++.||.+.|.+-..     +....+..|.+++.+-.|+|+|.-|++++.||.|++|.   ++|-....  +....
T Consensus        76 d~~~i~s~DGkf~il~k~~-----rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS---rsGMLRSt--l~Q~~  145 (737)
T KOG1524|consen   76 DTLLICSNDGRFVILNKSA-----RVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS---RSGMLRST--VVQNE  145 (737)
T ss_pred             ceEEEEcCCceEEEecccc-----hhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe---ccchHHHH--HhhcC
Confidence            3678888999999998776     67778899999999999999999999999999999999   56643322  23467


Q ss_pred             cceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEeeCCCeEEEEEeeeccc
Q psy11529        102 RAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDI  181 (244)
Q Consensus       102 ~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~  181 (244)
                      ..|+|++|.|+.+.++.+.. +.+.|=-+.....    ......|.+-|.+++|+|..+++++|++|-..++||-     
T Consensus       146 ~~v~c~~W~p~S~~vl~c~g-~h~~IKpL~~n~k----~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~-----  215 (737)
T KOG1524|consen  146 ESIRCARWAPNSNSIVFCQG-GHISIKPLAANSK----IIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDA-----  215 (737)
T ss_pred             ceeEEEEECCCCCceEEecC-CeEEEeecccccc----eeEEeccCcEEEEeecCccccceeecCCceeEEeecc-----
Confidence            78999999999877776654 4455544544432    4566789999999999999999999999999999995     


Q ss_pred             ccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeC
Q psy11529        182 ESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSH  230 (244)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~  230 (244)
                                    .+..+..-..|   ..+|++++|.|+ +.++.++.
T Consensus       216 --------------~G~~Lf~S~~~---ey~ITSva~npd-~~~~v~S~  246 (737)
T KOG1524|consen  216 --------------QGANLFTSAAE---EYAITSVAFNPE-KDYLLWSY  246 (737)
T ss_pred             --------------cCcccccCChh---ccceeeeeeccc-cceeeeee
Confidence                          57888887888   999999999999 55555553

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.82  E-value=1.6e-17  Score=129.36  Aligned_cols=198  Identities=18%  Similarity=0.209  Sum_probs=129.3

Q ss_pred             CCCceEEEEEcCCCCeEEEecC---CCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEE-EEeCCccEEEEe
Q psy11529          8 GINPVTTHAWNNTRQQLAFTPN---NQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIV-TCSADRNAYVWT   83 (244)
Q Consensus         8 ~~~~v~~~~~~~~~~~l~~~~~---d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~iwd   83 (244)
                      +.+.+.+.+|+|||+.|++.+.   ...|++||+.+  +.   ...+....+.+...+|+|||+.|+ +.+.++...||.
T Consensus       194 ~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~--g~---~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~  268 (427)
T PRK02889        194 SPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLAT--GR---RRVVANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYT  268 (427)
T ss_pred             CCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCC--CC---EEEeecCCCCccceEECCCCCEEEEEEccCCCceEEE
Confidence            4577889999999999988764   24699999987  42   223333445567899999999886 456788877777


Q ss_pred             eeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeC-CCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEE
Q psy11529         84 QNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSG-ARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLL  162 (244)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l  162 (244)
                      ++...+..   ..+..+........|+|||+.|+..+. ++...+|.++.....  ...... ........+|+|||++|
T Consensus       269 ~d~~~~~~---~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~--~~~lt~-~g~~~~~~~~SpDG~~I  342 (427)
T PRK02889        269 VNADGSGL---RRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGA--AQRVTF-TGSYNTSPRISPDGKLL  342 (427)
T ss_pred             EECCCCCc---EECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCc--eEEEec-CCCCcCceEECCCCCEE
Confidence            54555542   222334445667899999998886654 567777777643321  111111 12334468899999999


Q ss_pred             EEeeCCC---eEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCC-c--EEE
Q psy11529        163 GCGSTDF---KVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDG-S--INV  236 (244)
Q Consensus       163 ~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-~--i~v  236 (244)
                      +..+.++   .|.+||+                  ..++.. .+..    ......+.|+|||+.|+..+.++ .  +.+
T Consensus       343 a~~s~~~g~~~I~v~d~------------------~~g~~~-~lt~----~~~~~~p~~spdg~~l~~~~~~~g~~~l~~  399 (427)
T PRK02889        343 AYISRVGGAFKLYVQDL------------------ATGQVT-ALTD----TTRDESPSFAPNGRYILYATQQGGRSVLAA  399 (427)
T ss_pred             EEEEccCCcEEEEEEEC------------------CCCCeE-EccC----CCCccCceECCCCCEEEEEEecCCCEEEEE
Confidence            8777654   6999998                  333322 2222    22346789999999888776543 2  444


Q ss_pred             EeC
Q psy11529        237 RMS  239 (244)
Q Consensus       237 wd~  239 (244)
                      .++
T Consensus       400 ~~~  402 (427)
T PRK02889        400 VSS  402 (427)
T ss_pred             EEC
Confidence            444

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.82  E-value=1.6e-16  Score=123.73  Aligned_cols=206  Identities=23%  Similarity=0.347  Sum_probs=157.6

Q ss_pred             EEeCCCceEEEEEcCCCCeEEEecC-CCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCC-eEEEEeCCccEEEE
Q psy11529          5 YSFGINPVTTHAWNNTRQQLAFTPN-NQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTN-RIVTCSADRNAYVW   82 (244)
Q Consensus         5 ~~~~~~~v~~~~~~~~~~~l~~~~~-d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iw   82 (244)
                      ...|...|.+++|+|+++.+++++. ++.+++|+...  .  .....+.+|...|.+++|+|++. .+++++.|+.+++|
T Consensus       151 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~w  226 (466)
T COG2319         151 LEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRT--G--KPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLW  226 (466)
T ss_pred             EecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCC--C--ceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEE
Confidence            4456789999999999998888875 99999999976  3  67778888999999999999988 55555889999999


Q ss_pred             eeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEE
Q psy11529         83 TQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLL  162 (244)
Q Consensus        83 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l  162 (244)
                      |  ...+..... ....|.... ...|+|++..+++++.|+.+++|+.+....  ..... ..|...+.++.|+|++..+
T Consensus       227 d--~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~--~~~~~-~~~~~~v~~~~~~~~~~~~  299 (466)
T COG2319         227 D--LSTGKLLRS-TLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSS--LLRTL-SGHSSSVLSVAFSPDGKLL  299 (466)
T ss_pred             E--CCCCcEEee-ecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCc--EEEEE-ecCCccEEEEEECCCCCEE
Confidence            9  555543221 344555554 338999998899999999999999987764  11222 5667899999999988888


Q ss_pred             EEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEec--CCCCCCCCeEEEEEecCCCEEEEe-eCCCcEEEEeC
Q psy11529        163 GCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELN--NSSSGGGWIHSVAFSKDGNKLCWT-SHDGSINVRMS  239 (244)
Q Consensus       163 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~vwd~  239 (244)
                      ++++.|+.+.+||.                  ..........  .|   ...+..+.|.+++..++.+ ..|+.+.+|++
T Consensus       300 ~~~~~d~~~~~~~~------------------~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  358 (466)
T COG2319         300 ASGSSDGTVRLWDL------------------ETGKLLSSLTLKGH---EGPVSSLSFSPDGSLLVSGGSDDGTIRLWDL  358 (466)
T ss_pred             EEeeCCCcEEEEEc------------------CCCceEEEeeeccc---CCceEEEEECCCCCEEEEeecCCCcEEeeec
Confidence            88888889999987                  3344333333  55   5678999994343555555 67899999998


Q ss_pred             CCC
Q psy11529        240 QQV  242 (244)
Q Consensus       240 ~~~  242 (244)
                      ...
T Consensus       359 ~~~  361 (466)
T COG2319         359 RTG  361 (466)
T ss_pred             CCC
Confidence            754

>KOG0644|consensus

Probab=99.81  E-value=2.3e-20  Score=146.33  Aligned_cols=223  Identities=18%  Similarity=0.159  Sum_probs=158.2

Q ss_pred             eCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeC
Q psy11529          7 FGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNN   86 (244)
Q Consensus         7 ~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~   86 (244)
                      .|...|+|+.|...|+++++|+.|..++||.+++  .  .+.....||.+.|+.++.+.+...+++++.|..|++|.  +
T Consensus       188 gH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et--~--~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWr--l  261 (1113)
T KOG0644|consen  188 GHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMET--A--RCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWR--L  261 (1113)
T ss_pred             hhhhheeeeeeccccceEeecCccceeeeeeccc--h--hhhccCCCCccccchhccchhhhhhhhcccCceEEEEe--c
Confidence            4678899999999999999999999999999877  5  78999999999999999999888999999999999999  7


Q ss_pred             CCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEee
Q psy11529         87 DDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGS  166 (244)
Q Consensus        87 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~  166 (244)
                      .++..+.  .+.+|.+.|++++|+|-.    +.+.||++++||.+-.-..+.+..........+.++-|...+.-++|++
T Consensus       262 ~~~~pvs--vLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs  335 (1113)
T KOG0644|consen  262 PDGAPVS--VLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGS  335 (1113)
T ss_pred             CCCchHH--HHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeecccccccccccc
Confidence            8877544  346899999999999964    7788999999999833221221111112223444455555555555555


Q ss_pred             CCCeEEEEEeeeccccc-----CCCCCCCC--------------ccccccceeEEecCCCCCCCCeEEEEEec-CCCEEE
Q psy11529        167 TDFKVRVFSAYIKDIES-----APQSTNWG--------------SKSTLGNCLVELNNSSSGGGWIHSVAFSK-DGNKLC  226 (244)
Q Consensus       167 ~dg~i~i~d~~~~~~~~-----~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~  226 (244)
                      .|+.-..|.+.......     ........              =...++...+.+.+|   ...+..+.++| +.+...
T Consensus       336 ~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~gh---sd~~yvLd~Hpfn~ri~m  412 (1113)
T KOG0644|consen  336 RDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGH---SDEVYVLDVHPFNPRIAM  412 (1113)
T ss_pred             CCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhccc---ccceeeeeecCCCcHhhh
Confidence            55554444432110000     00000000              001456666667777   88899999999 555667


Q ss_pred             EeeCCCcEEEEeCCCCCC
Q psy11529        227 WTSHDGSINVRMSQQVLP  244 (244)
Q Consensus       227 ~~~~dg~i~vwd~~~~~p  244 (244)
                      +++.||+..|||+-.-.|
T Consensus       413 sag~dgst~iwdi~eg~p  430 (1113)
T KOG0644|consen  413 SAGYDGSTIIWDIWEGIP  430 (1113)
T ss_pred             hccCCCceEeeecccCCc
Confidence            889999999999876544

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.81  E-value=1e-17  Score=116.07  Aligned_cols=150  Identities=14%  Similarity=0.204  Sum_probs=105.8

Q ss_pred             EEEEeCCCCCeEEEEeC----------CccEEEEeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEee--CCCeEE
Q psy11529         59 TGIDWAPNTNRIVTCSA----------DRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGS--GARLIS  126 (244)
Q Consensus        59 ~~~~~~~~~~~l~~~~~----------d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~d~~i~  126 (244)
                      ..+.|+|+|.+|+.-..          -+...+|.++.... ......+ ...+.|.+++|+|+++.|++..  .+..+.
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~-~~~~i~l-~~~~~I~~~~WsP~g~~favi~g~~~~~v~   86 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNI-PVESIEL-KKEGPIHDVAWSPNGNEFAVIYGSMPAKVT   86 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCC-ccceeec-cCCCceEEEEECcCCCEEEEEEccCCcccE
Confidence            45789999987764332          23456666423332 2223332 3345699999999999977654  467999


Q ss_pred             EEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEeeC---CCeEEEEEeeecccccCCCCCCCCccccccceeEEe
Q psy11529        127 VCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGST---DFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVEL  203 (244)
Q Consensus       127 i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (244)
                      +||++...     ....  ....++.+.|+|+|++|++++.   .|.|.+||.                  ...+.+...
T Consensus        87 lyd~~~~~-----i~~~--~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~------------------~~~~~i~~~  141 (194)
T PF08662_consen   87 LYDVKGKK-----IFSF--GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDV------------------RKKKKISTF  141 (194)
T ss_pred             EEcCcccE-----eEee--cCCCceEEEECCCCCEEEEEEccCCCcEEEEEEC------------------CCCEEeecc
Confidence            99997321     1222  2457789999999999999864   467999999                  556666655


Q ss_pred             cCCCCCCCCeEEEEEecCCCEEEEeeC------CCcEEEEeCC
Q psy11529        204 NNSSSGGGWIHSVAFSKDGNKLCWTSH------DGSINVRMSQ  240 (244)
Q Consensus       204 ~~~~~~~~~v~~~~~s~~~~~l~~~~~------dg~i~vwd~~  240 (244)
                      .     ...++.++|+|||++|+++..      |+.++||+..
T Consensus       142 ~-----~~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~  179 (194)
T PF08662_consen  142 E-----HSDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ  179 (194)
T ss_pred             c-----cCcEEEEEEcCCCCEEEEEEeccceeccccEEEEEec
Confidence            4     335789999999999998874      7889999975

>KOG1963|consensus

Probab=99.81  E-value=3.2e-17  Score=129.28  Aligned_cols=117  Identities=13%  Similarity=0.160  Sum_probs=91.8

Q ss_pred             CCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCC
Q psy11529          8 GINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNND   87 (244)
Q Consensus         8 ~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~   87 (244)
                      |...+++.++||+++++|+|..||.|.+|.--+..+.-.....+.-|...|++++|+++|.+|++|+.++.+.+|.  +.
T Consensus       204 Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq--~~  281 (792)
T KOG1963|consen  204 HTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQ--LE  281 (792)
T ss_pred             hcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEe--ec
Confidence            3455899999999999999999999999974220122245567788999999999999999999999999999999  67


Q ss_pred             CCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEE
Q psy11529         88 DKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCY  129 (244)
Q Consensus        88 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d  129 (244)
                      +++   ...++.-.+.+..+.++||+.+.+....|+.|.+..
T Consensus       282 T~~---kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~  320 (792)
T KOG1963|consen  282 TGK---KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIK  320 (792)
T ss_pred             CCC---cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEe
Confidence            766   223455677888888888888777777776655433

>KOG1272|consensus

Probab=99.81  E-value=9.9e-20  Score=134.11  Aligned_cols=197  Identities=12%  Similarity=0.138  Sum_probs=163.2

Q ss_pred             CCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCCC
Q psy11529          9 INPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDD   88 (244)
Q Consensus         9 ~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~   88 (244)
                      +-.-..+.++.+|++|+.|+..|.|..+|..+  .  .+...+. -...|.++.|-.+.+++|.+ ....++|||   ..
T Consensus       129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t--~--~L~~Ei~-v~Etv~Dv~~LHneq~~AVA-QK~y~yvYD---~~  199 (545)
T KOG1272|consen  129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVT--K--KLHFEIN-VMETVRDVTFLHNEQFFAVA-QKKYVYVYD---NN  199 (545)
T ss_pred             ccCCeeeeecCCccEEEecCCccceeeeeccc--c--eeeeeee-hhhhhhhhhhhcchHHHHhh-hhceEEEec---CC
Confidence            33446789999999999999999999999987  4  4444444 56789999999888888876 467899999   45


Q ss_pred             CCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEeeCC
Q psy11529         89 KKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTD  168 (244)
Q Consensus        89 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d  168 (244)
                      |..   +........|..+.|-|..-+|++++..|.++.-|+.+++.    ........+.+..++-+|-+..+-+|...
T Consensus       200 GtE---lHClk~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~Gkl----Va~~~t~~G~~~vm~qNP~NaVih~Ghsn  272 (545)
T KOG1272|consen  200 GTE---LHCLKRHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKL----VASIRTGAGRTDVMKQNPYNAVIHLGHSN  272 (545)
T ss_pred             CcE---EeehhhcCchhhhcccchhheeeecccCCceEEEeechhhh----hHHHHccCCccchhhcCCccceEEEcCCC
Confidence            542   22223457789999999988899999999999999999875    33333345788889999999899999999


Q ss_pred             CeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCCC
Q psy11529        169 FKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQV  242 (244)
Q Consensus       169 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~  242 (244)
                      |+|.+|..                  ...+++..+..|   .++|+++++.++|+|++|.+.|..++|||++++
T Consensus       273 GtVSlWSP------------------~skePLvKiLcH---~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~  325 (545)
T KOG1272|consen  273 GTVSLWSP------------------NSKEPLVKILCH---RGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNF  325 (545)
T ss_pred             ceEEecCC------------------CCcchHHHHHhc---CCCcceEEECCCCcEEeecccccceeEeeeccc
Confidence            99999998                  667788888888   999999999999999999999999999999986

>KOG1523|consensus

Probab=99.81  E-value=4.6e-18  Score=119.96  Aligned_cols=168  Identities=17%  Similarity=0.204  Sum_probs=134.3

Q ss_pred             eCCCceEEEEEcCCCCeEEEecCCCeEEEeee-ccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeee
Q psy11529          7 FGINPVTTHAWNNTRQQLAFTPNNQEVHLYQY-EKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQN   85 (244)
Q Consensus         7 ~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~   85 (244)
                      .|...|++++|+|..+.|++++.|..-+||.. .+  +.+++...+..++..++++.|+|.++.|++|+....|.||-+.
T Consensus        53 ~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~--~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E  130 (361)
T KOG1523|consen   53 EHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSG--GTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYE  130 (361)
T ss_pred             hhCcceeEEeecCCCCceeEccCCCCccccccCCC--CeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEe
Confidence            35789999999999999999999999999998 66  7788888888899999999999999999999999999999842


Q ss_pred             CCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCC--------------ceEEEeeecCCCCcee
Q psy11529         86 NDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESEND--------------WWVAKHIKKPIKSTIT  151 (244)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~--------------~~~~~~~~~~~~~~v~  151 (244)
                      -++.=+.....-..+.+.|.+++|+|++-+|+.|+.|+..++|..--...              +...........+.+.
T Consensus       131 ~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh  210 (361)
T KOG1523|consen  131 QENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVH  210 (361)
T ss_pred             cccceehhhhhCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCcee
Confidence            22222222333345678899999999999999999999999987422110              0011111123457899


Q ss_pred             EEEecCCCCEEEEeeCCCeEEEEEe
Q psy11529        152 CLDWHPNNHLLGCGSTDFKVRVFSA  176 (244)
Q Consensus       152 ~~~~~p~~~~l~~~~~dg~i~i~d~  176 (244)
                      .+.|+|+|..|+-.+.|..+.+-|.
T Consensus       211 ~v~fs~sG~~lawv~Hds~v~~~da  235 (361)
T KOG1523|consen  211 GVLFSPSGNRLAWVGHDSTVSFVDA  235 (361)
T ss_pred             eeEeCCCCCEeeEecCCCceEEeec
Confidence            9999999999999999999999986

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.80  E-value=5.5e-17  Score=126.77  Aligned_cols=196  Identities=13%  Similarity=0.203  Sum_probs=127.9

Q ss_pred             CCCceEEEEEcCCCCeEEEecC---CCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEE-EEeCCc--cEEE
Q psy11529          8 GINPVTTHAWNNTRQQLAFTPN---NQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIV-TCSADR--NAYV   81 (244)
Q Consensus         8 ~~~~v~~~~~~~~~~~l~~~~~---d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~--~i~i   81 (244)
                      +...+.+.+|+|||+.|++.+.   +..|++|++.+  +...   .+....+...+++|+|+|+.++ +.+.++  .|++
T Consensus       202 ~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~--g~~~---~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~  276 (433)
T PRK04922        202 SAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLAT--GQRE---LVASFRGINGAPSFSPDGRRLALTLSRDGNPEIYV  276 (433)
T ss_pred             CCCccccccCCCCCCEEEEEecCCCCcEEEEEECCC--CCEE---EeccCCCCccCceECCCCCEEEEEEeCCCCceEEE
Confidence            3567889999999999998763   34799999977  4222   3333444556789999999776 445555  5888


Q ss_pred             EeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeC-CCeEEEE--EeecCCCceEEEeeecCCCCceeEEEecCC
Q psy11529         82 WTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSG-ARLISVC--YFESENDWWVAKHIKKPIKSTITCLDWHPN  158 (244)
Q Consensus        82 wd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~i~--d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~  158 (244)
                      ||  +.+++..   .+..+.......+|+|+|+.|+.++. ++...+|  ++..++.    .... ........++|+||
T Consensus       277 ~d--~~~g~~~---~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~----~~lt-~~g~~~~~~~~SpD  346 (433)
T PRK04922        277 MD--LGSRQLT---RLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSA----ERLT-FQGNYNARASVSPD  346 (433)
T ss_pred             EE--CCCCCeE---ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCe----EEee-cCCCCccCEEECCC
Confidence            88  6776632   22334445567899999998887764 4554444  4444432    1111 12234457899999


Q ss_pred             CCEEEEeeCCC---eEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCC---C
Q psy11529        159 NHLLGCGSTDF---KVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHD---G  232 (244)
Q Consensus       159 ~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g  232 (244)
                      |++|+..+.++   .|.+||+                  ..++.. .+..    ......+.|+|||++|+..+.+   +
T Consensus       347 G~~Ia~~~~~~~~~~I~v~d~------------------~~g~~~-~Lt~----~~~~~~p~~spdG~~i~~~s~~~g~~  403 (433)
T PRK04922        347 GKKIAMVHGSGGQYRIAVMDL------------------STGSVR-TLTP----GSLDESPSFAPNGSMVLYATREGGRG  403 (433)
T ss_pred             CCEEEEEECCCCceeEEEEEC------------------CCCCeE-ECCC----CCCCCCceECCCCCEEEEEEecCCce
Confidence            99988765443   6889997                  333332 2322    2234567999999988776653   3


Q ss_pred             cEEEEeCCC
Q psy11529        233 SINVRMSQQ  241 (244)
Q Consensus       233 ~i~vwd~~~  241 (244)
                      .|.++++..
T Consensus       404 ~L~~~~~~g  412 (433)
T PRK04922        404 VLAAVSTDG  412 (433)
T ss_pred             EEEEEECCC
Confidence            577777753

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.80  E-value=7.4e-17  Score=111.82  Aligned_cols=148  Identities=14%  Similarity=0.265  Sum_probs=104.1

Q ss_pred             EEEEEcCCCCeEEEecC----------CCeEEEeeeccCCCcceeeeeecc-CCCceEEEEeCCCCCeEEEE--eCCccE
Q psy11529         13 TTHAWNNTRQQLAFTPN----------NQEVHLYQYEKAANDWSQLDVLDG-HDLKVTGIDWAPNTNRIVTC--SADRNA   79 (244)
Q Consensus        13 ~~~~~~~~~~~l~~~~~----------d~~v~v~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~--~~d~~i   79 (244)
                      ..+.|+|+|++|++-..          -+...+|.++...   .....+.- ..++|.+++|+|+|+.|+..  ..++.|
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~---~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v   85 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKN---IPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKV   85 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCC---CccceeeccCCCceEEEEECcCCCEEEEEEccCCccc
Confidence            46889999998765432          2456666664311   23333322 34579999999999987654  356799


Q ss_pred             EEEeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeC---CCeEEEEEeecCCCceEEEeeecCCCCceeEEEec
Q psy11529         80 YVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSG---ARLISVCYFESENDWWVAKHIKKPIKSTITCLDWH  156 (244)
Q Consensus        80 ~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~  156 (244)
                      .+||  .+ .+  ....+  ....++.+.|+|+|++|++++.   .|.+.+||.+..+.    . . ......++.++|+
T Consensus        86 ~lyd--~~-~~--~i~~~--~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~----i-~-~~~~~~~t~~~Ws  152 (194)
T PF08662_consen   86 TLYD--VK-GK--KIFSF--GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKK----I-S-TFEHSDATDVEWS  152 (194)
T ss_pred             EEEc--Cc-cc--EeEee--cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEE----e-e-ccccCcEEEEEEc
Confidence            9999  54 32  23332  3567789999999999999874   46799999996543    1 1 2223457899999


Q ss_pred             CCCCEEEEeeC------CCeEEEEEe
Q psy11529        157 PNNHLLGCGST------DFKVRVFSA  176 (244)
Q Consensus       157 p~~~~l~~~~~------dg~i~i~d~  176 (244)
                      |||+++++++.      |..++||+.
T Consensus       153 PdGr~~~ta~t~~r~~~dng~~Iw~~  178 (194)
T PF08662_consen  153 PDGRYLATATTSPRLRVDNGFKIWSF  178 (194)
T ss_pred             CCCCEEEEEEeccceeccccEEEEEe
Confidence            99999998874      678899997

>KOG0322|consensus

Probab=99.80  E-value=2.6e-18  Score=118.24  Aligned_cols=164  Identities=14%  Similarity=0.184  Sum_probs=127.5

Q ss_pred             CCceEEEEEcC-CCC--eEEEecCCCeEEEeeeccCCC------cceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccE
Q psy11529          9 INPVTTHAWNN-TRQ--QLAFTPNNQEVHLYQYEKAAN------DWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNA   79 (244)
Q Consensus         9 ~~~v~~~~~~~-~~~--~l~~~~~d~~v~v~~~~~~~~------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i   79 (244)
                      .+.+.|..+.. +++  ++++|-++|.+.+||+.....      .++.......|+.+|.++.+.+.-..=++|+.+..+
T Consensus       150 lgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl  229 (323)
T KOG0322|consen  150 LGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKL  229 (323)
T ss_pred             cCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccc
Confidence            56777777544 333  456777899999999976210      112233456799999999999865555778888899


Q ss_pred             EEEeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCC
Q psy11529         80 YVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNN  159 (244)
Q Consensus        80 ~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~  159 (244)
                      ..|.++-.++.+.......-.+..+..+..-||++.+|+++.|++|+||.+++..+    ......|.+.|++++|+|+.
T Consensus       230 ~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~p----LAVLkyHsagvn~vAfspd~  305 (323)
T KOG0322|consen  230 VMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNP----LAVLKYHSAGVNAVAFSPDC  305 (323)
T ss_pred             eeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCc----hhhhhhhhcceeEEEeCCCC
Confidence            99996444455443333334456788999999999999999999999999999986    56677788999999999999


Q ss_pred             CEEEEeeCCCeEEEEEe
Q psy11529        160 HLLGCGSTDFKVRVFSA  176 (244)
Q Consensus       160 ~~l~~~~~dg~i~i~d~  176 (244)
                      .++|.++.|++|.+|++
T Consensus       306 ~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  306 ELMAAASKDARISLWKL  322 (323)
T ss_pred             chhhhccCCceEEeeec
Confidence            99999999999999997

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.79  E-value=4e-16  Score=121.55  Aligned_cols=204  Identities=20%  Similarity=0.311  Sum_probs=158.9

Q ss_pred             EeCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCC-CceEEEEe-CCCCC-eEEEEeC-CccEEE
Q psy11529          6 SFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHD-LKVTGIDW-APNTN-RIVTCSA-DRNAYV   81 (244)
Q Consensus         6 ~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~-~~v~~~~~-~~~~~-~l~~~~~-d~~i~i   81 (244)
                      ..+...+.++.+.+.+..++.++.++.+.+|+...  +. .....+..+. ..+..+.+ ++++. .++..+. |+.+.+
T Consensus        62 ~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  138 (466)
T COG2319          62 RGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDN--GE-KLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKL  138 (466)
T ss_pred             eeccceEEEEEECCCCcEEEEecCCCcEEEEEcCC--Cc-eeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEE
Confidence            45678999999999999999999999999999987  31 2555666544 36777777 88777 5555444 999999


Q ss_pred             EeeeCCC-CCceeeEEEeccCcceEEEEECCCCCeEEEeeC-CCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCC
Q psy11529         82 WTQNNDD-KKWKPTLVLLRINRAATCVKWSPLENKFAAGSG-ARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNN  159 (244)
Q Consensus        82 wd~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~  159 (244)
                      |+  ... ..  .......|...+..++|+|++..++.++. ++.+++|+......    ......|...+.+++|+|++
T Consensus       139 ~~--~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~v~~~~~~~~~  210 (466)
T COG2319         139 WD--LSTPGK--LIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKP----LSTLAGHTDPVSSLAFSPDG  210 (466)
T ss_pred             EE--ecCCCe--EEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCce----EEeeccCCCceEEEEEcCCc
Confidence            99  554 22  34455678899999999999998888885 99999999998543    34445588999999999999


Q ss_pred             C-EEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeE-EecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEE
Q psy11529        160 H-LLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLV-ELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVR  237 (244)
Q Consensus       160 ~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw  237 (244)
                      . .+++++.|+.|++||.                  ..+..+. .+..|   .... -..|+|++.++++++.|+.+++|
T Consensus       211 ~~~~~~~~~d~~i~~wd~------------------~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~d~~~~~~  268 (466)
T COG2319         211 GLLIASGSSDGTIRLWDL------------------STGKLLRSTLSGH---SDSV-VSSFSPDGSLLASGSSDGTIRLW  268 (466)
T ss_pred             ceEEEEecCCCcEEEEEC------------------CCCcEEeeecCCC---Ccce-eEeECCCCCEEEEecCCCcEEEe
Confidence            8 5555589999999987                  4455555 57766   4443 33899999889999999999999


Q ss_pred             eCCCC
Q psy11529        238 MSQQV  242 (244)
Q Consensus       238 d~~~~  242 (244)
                      +++..
T Consensus       269 ~~~~~  273 (466)
T COG2319         269 DLRSS  273 (466)
T ss_pred             eecCC
Confidence            98754

>KOG1310|consensus

Probab=99.79  E-value=7.6e-19  Score=132.24  Aligned_cols=185  Identities=17%  Similarity=0.190  Sum_probs=136.7

Q ss_pred             eeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCCCCCceeeEEEeccCcceEEEEECCC--CCeEEEeeCCC
Q psy11529         46 SQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPL--ENKFAAGSGAR  123 (244)
Q Consensus        46 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~  123 (244)
                      .+.+.+.+|++-|++++|+.+|.+|++|++|-.+.|||  ....+....+. .+|...|.++.|-|.  .+.+++|..|.
T Consensus        41 ~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd--~~~~KllhsI~-TgHtaNIFsvKFvP~tnnriv~sgAgDk  117 (758)
T KOG1310|consen   41 DLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWD--PFEYKLLHSIS-TGHTANIFSVKFVPYTNNRIVLSGAGDK  117 (758)
T ss_pred             chhhhhccccceecceeecCCCCEEeecCCcceEEeec--chhcceeeeee-cccccceeEEeeeccCCCeEEEeccCcc
Confidence            45567899999999999999999999999999999999  55555444443 689999999999985  56799999999


Q ss_pred             eEEEEEeecCCC------ceEEEeeecCCCCceeEEEecCCC-CEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccc
Q psy11529        124 LISVCYFESEND------WWVAKHIKKPIKSTITCLDWHPNN-HLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTL  196 (244)
Q Consensus       124 ~i~i~d~~~~~~------~~~~~~~~~~~~~~v~~~~~~p~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~  196 (244)
                      .|++||+...+.      ..........|...|..++-.|++ +.+-++++||+|+-||+|-.....+..        ..
T Consensus       118 ~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~--------~~  189 (758)
T KOG1310|consen  118 LIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDE--------DC  189 (758)
T ss_pred             eEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccc--------cc
Confidence            999999985321      112233445567788889999988 788899999999999996322111000        00


Q ss_pred             cceeEEecCCCCCCCCeEEEEEecC-CCEEEEeeCCCcEEEEeCCCCCC
Q psy11529        197 GNCLVELNNSSSGGGWIHSVAFSKD-GNKLCWTSHDGSINVRMSQQVLP  244 (244)
Q Consensus       197 ~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~vwd~~~~~p  244 (244)
                      ...+..+...   --...++..+|. ..+|+.|+.|-..++||.+.++|
T Consensus       190 ~~~l~ny~~~---lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lk  235 (758)
T KOG1310|consen  190 PSILVNYNPQ---LIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLK  235 (758)
T ss_pred             cHHHHHhchh---hheeeeeeecCCCCceEEecCCCchhhhhhhhhhcc
Confidence            1111122221   334678899995 45899999999999999776554

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.79  E-value=3.1e-17  Score=127.96  Aligned_cols=175  Identities=14%  Similarity=0.175  Sum_probs=120.0

Q ss_pred             CCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCC---ccEEEEeeeCCCCCceeeEEEeccCcceEE
Q psy11529         30 NQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSAD---RNAYVWTQNNDDKKWKPTLVLLRINRAATC  106 (244)
Q Consensus        30 d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~  106 (244)
                      +..|++||.++     .....+..|...+.+++|+|+|++|+.++.+   ..|++||  +.+++......   .......
T Consensus       183 ~~~i~i~d~dg-----~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~d--l~tg~~~~l~~---~~g~~~~  252 (429)
T PRK01742        183 PYEVRVADYDG-----FNQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHD--LRSGARKVVAS---FRGHNGA  252 (429)
T ss_pred             eEEEEEECCCC-----CCceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEe--CCCCceEEEec---CCCccCc
Confidence            46899999877     3345567788889999999999999887653   4699999  66665332222   2333457


Q ss_pred             EEECCCCCeEEEee-CCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEee-CCCeEEEEEeeecccccC
Q psy11529        107 VKWSPLENKFAAGS-GARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGS-TDFKVRVFSAYIKDIESA  184 (244)
Q Consensus       107 ~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~-~dg~i~i~d~~~~~~~~~  184 (244)
                      ++|+|||+.|+++. .++.+.||.++....  . ......+...+....|+|||+.|+..+ .+|...||++...     
T Consensus       253 ~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~--~-~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~-----  324 (429)
T PRK01742        253 PAFSPDGSRLAFASSKDGVLNIYVMGANGG--T-PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSAS-----  324 (429)
T ss_pred             eeECCCCCEEEEEEecCCcEEEEEEECCCC--C-eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECC-----
Confidence            89999999988765 678777776654322  1 122334456678899999999777655 5788888887421     


Q ss_pred             CCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCC
Q psy11529        185 PQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQ  241 (244)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~  241 (244)
                                  +.....+ .+   ..  ..+.|+|||++|+..+.++ +.+||+.+
T Consensus       325 ------------~~~~~~l-~~---~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~  362 (429)
T PRK01742        325 ------------GGGASLV-GG---RG--YSAQISADGKTLVMINGDN-VVKQDLTS  362 (429)
T ss_pred             ------------CCCeEEe-cC---CC--CCccCCCCCCEEEEEcCCC-EEEEECCC
Confidence                        1112222 22   32  4578999999998887764 55688765

>KOG2111|consensus

Probab=99.78  E-value=2.2e-16  Score=111.49  Aligned_cols=180  Identities=19%  Similarity=0.238  Sum_probs=135.1

Q ss_pred             CeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCC-CCCceeeEEEeccCcceEEEEE
Q psy11529         31 QEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNND-DKKWKPTLVLLRINRAATCVKW  109 (244)
Q Consensus        31 ~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~v~~~~~  109 (244)
                      +.|.|||=..  .  +++.++. ...+|.++.+.++  +|++.- .+.|+||.  .. +.+....+.....+....++.-
T Consensus        75 NkviIWDD~k--~--~~i~el~-f~~~I~~V~l~r~--riVvvl-~~~I~Vyt--F~~n~k~l~~~et~~NPkGlC~~~~  144 (346)
T KOG2111|consen   75 NKVIIWDDLK--E--RCIIELS-FNSEIKAVKLRRD--RIVVVL-ENKIYVYT--FPDNPKLLHVIETRSNPKGLCSLCP  144 (346)
T ss_pred             ceEEEEeccc--C--cEEEEEE-eccceeeEEEcCC--eEEEEe-cCeEEEEE--cCCChhheeeeecccCCCceEeecC
Confidence            5799999433  2  6777776 6789999999864  555554 67999999  44 3343334433333445554444


Q ss_pred             CCCCCeEEE-eeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEeeCCCe-EEEEEeeecccccCCCC
Q psy11529        110 SPLENKFAA-GSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFK-VRVFSAYIKDIESAPQS  187 (244)
Q Consensus       110 ~~~~~~l~~-~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~-i~i~d~~~~~~~~~~~~  187 (244)
                      +.+..+||. |-.-|.|+|-|+...+.  -......+|.+.|.+++.+-+|.++||++..|+ |||||.           
T Consensus       145 ~~~k~~LafPg~k~GqvQi~dL~~~~~--~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt-----------  211 (346)
T KOG2111|consen  145 TSNKSLLAFPGFKTGQVQIVDLASTKP--NAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDT-----------  211 (346)
T ss_pred             CCCceEEEcCCCccceEEEEEhhhcCc--CCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEc-----------
Confidence            444455555 44579999999887653  123566789999999999999999999999996 899999           


Q ss_pred             CCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCC
Q psy11529        188 TNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQ  241 (244)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~  241 (244)
                             .+++.+.+++..- ....|.+++|||++.+|+++|+-|++.|+.++.
T Consensus       212 -------~~g~~l~E~RRG~-d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~  257 (346)
T KOG2111|consen  212 -------EDGTLLQELRRGV-DRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRD  257 (346)
T ss_pred             -------CCCcEeeeeecCC-chheEEEEEeCCCccEEEEEcCCCeEEEEEeec
Confidence                   7788888886431 156799999999999999999999999999875

>KOG3881|consensus

Probab=99.78  E-value=6.3e-17  Score=117.04  Aligned_cols=202  Identities=12%  Similarity=0.086  Sum_probs=149.2

Q ss_pred             CCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCC-eEEEEeCC--ccEEEEeee
Q psy11529          9 INPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTN-RIVTCSAD--RNAYVWTQN   85 (244)
Q Consensus         9 ~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d--~~i~iwd~~   85 (244)
                      ..+|..++.. || .|++|-.+|.+.+|....+.-.-.....+..+ ..+..+.-++... .+++|+..  ..+.+||  
T Consensus       105 ~~~I~gl~~~-dg-~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwd--  179 (412)
T KOG3881|consen  105 TKSIKGLKLA-DG-TLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWD--  179 (412)
T ss_pred             cccccchhhc-CC-EEEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeee--
Confidence            3444444433 23 56677788999999987411001334444433 5566677777444 55668888  8899999  


Q ss_pred             CCCCCceeeEEEec---------cCcceEEEEECCC--CCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEE
Q psy11529         86 NDDKKWKPTLVLLR---------INRAATCVKWSPL--ENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLD  154 (244)
Q Consensus        86 ~~~~~~~~~~~~~~---------~~~~v~~~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~  154 (244)
                      ++..+  +......         .+-.++.+.|-+.  ...|++++.-+.+++||.+.+..   +...+.-...+++++.
T Consensus       180 le~~~--qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRR---PV~~fd~~E~~is~~~  254 (412)
T KOG3881|consen  180 LEQSK--QIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRR---PVAQFDFLENPISSTG  254 (412)
T ss_pred             cccce--eeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCc---ceeEeccccCcceeee
Confidence            66553  2332221         2345778999887  78899999999999999997765   3344444567999999


Q ss_pred             ecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEE-ecCCCCCCCCeEEEEEecCCCEEEEeeCCCc
Q psy11529        155 WHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVE-LNNSSSGGGWIHSVAFSKDGNKLCWTSHDGS  233 (244)
Q Consensus       155 ~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~  233 (244)
                      ..|+++++++|...|.+..||+                  +.++.... +.+.   .+.|+++..+|.+++|+++|-|..
T Consensus       255 l~p~gn~Iy~gn~~g~l~~FD~------------------r~~kl~g~~~kg~---tGsirsih~hp~~~~las~GLDRy  313 (412)
T KOG3881|consen  255 LTPSGNFIYTGNTKGQLAKFDL------------------RGGKLLGCGLKGI---TGSIRSIHCHPTHPVLASCGLDRY  313 (412)
T ss_pred             ecCCCcEEEEecccchhheecc------------------cCceeeccccCCc---cCCcceEEEcCCCceEEeecccee
Confidence            9999999999999999999999                  45555554 6666   889999999999999999999999


Q ss_pred             EEEEeCCC
Q psy11529        234 INVRMSQQ  241 (244)
Q Consensus       234 i~vwd~~~  241 (244)
                      |+|+|+++
T Consensus       314 vRIhD~kt  321 (412)
T KOG3881|consen  314 VRIHDIKT  321 (412)
T ss_pred             EEEeeccc
Confidence            99999987

>KOG2394|consensus

Probab=99.77  E-value=1.3e-17  Score=125.18  Aligned_cols=141  Identities=17%  Similarity=0.262  Sum_probs=107.0

Q ss_pred             CCceEEEEEcCCC-CeEEEecCCCeEEEeeeccCC-------------Ccc-----------eeeeeeccCCCceEEEEe
Q psy11529          9 INPVTTHAWNNTR-QQLAFTPNNQEVHLYQYEKAA-------------NDW-----------SQLDVLDGHDLKVTGIDW   63 (244)
Q Consensus         9 ~~~v~~~~~~~~~-~~l~~~~~d~~v~v~~~~~~~-------------~~~-----------~~~~~~~~~~~~v~~~~~   63 (244)
                      +..|+|+.|-|.+ ..++++-.+|.+++||..-..             ..+           .++..+.--++.|+.++|
T Consensus       219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~F  298 (636)
T KOG2394|consen  219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAF  298 (636)
T ss_pred             ccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeE
Confidence            5889999999944 456667788999999753210             000           011112223467899999


Q ss_pred             CCCCCeEEEEeCCccEEEEeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeee
Q psy11529         64 APNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIK  143 (244)
Q Consensus        64 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~  143 (244)
                      +|||++||+.+.||.++|+|  ..+.+....+  ...-+...|++|+|||++|++|++|.-|.||.+...+.    ...-
T Consensus       299 S~DG~~LA~VSqDGfLRvF~--fdt~eLlg~m--kSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRV----VARG  370 (636)
T KOG2394|consen  299 SPDGKYLATVSQDGFLRIFD--FDTQELLGVM--KSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRV----VARG  370 (636)
T ss_pred             cCCCceEEEEecCceEEEee--ccHHHHHHHH--HhhccceEEEEEcCCccEEEecCCcceEEEEEeccceE----EEec
Confidence            99999999999999999999  6665533322  23457789999999999999999999999999988764    5666


Q ss_pred             cCCCCceeEEEecC
Q psy11529        144 KPIKSTITCLDWHP  157 (244)
Q Consensus       144 ~~~~~~v~~~~~~p  157 (244)
                      .+|+++|+.++|.|
T Consensus       371 qGHkSWVs~VaFDp  384 (636)
T KOG2394|consen  371 QGHKSWVSVVAFDP  384 (636)
T ss_pred             cccccceeeEeecc
Confidence            78999999999983

>KOG2139|consensus

Probab=99.77  E-value=6.6e-16  Score=111.03  Aligned_cols=221  Identities=16%  Similarity=0.176  Sum_probs=141.8

Q ss_pred             CCceEEEEEcCC-CCeEEEecCCCeEEEeeeccCCCcce----------eeeeeccCCCceEEEEeCCCCCeEEEEeC-C
Q psy11529          9 INPVTTHAWNNT-RQQLAFTPNNQEVHLYQYEKAANDWS----------QLDVLDGHDLKVTGIDWAPNTNRIVTCSA-D   76 (244)
Q Consensus         9 ~~~v~~~~~~~~-~~~l~~~~~d~~v~v~~~~~~~~~~~----------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d   76 (244)
                      ...|+|++|-|. ++.|++|.. +-|.+|........-.          .+....+| .+|+++.|.+||..+++++. |
T Consensus       140 QrnvtclawRPlsaselavgCr-~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gs  217 (445)
T KOG2139|consen  140 QRNVTCLAWRPLSASELAVGCR-AGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGS  217 (445)
T ss_pred             hcceeEEEeccCCcceeeeeec-ceeEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCc
Confidence            678999999995 456777775 5599998754211001          11222344 68999999999999998876 7


Q ss_pred             ccEEEEeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEec
Q psy11529         77 RNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWH  156 (244)
Q Consensus        77 ~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~  156 (244)
                      ..|.|||  ..++...+..  ....+.+.-+.|+||+.+|++++-|+..++|.....-   ....... ..+.|...+|+
T Consensus       218 ssi~iWd--pdtg~~~pL~--~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~w---t~erw~l-gsgrvqtacWs  289 (445)
T KOG2139|consen  218 SSIMIWD--PDTGQKIPLI--PKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSW---TKERWIL-GSGRVQTACWS  289 (445)
T ss_pred             ceEEEEc--CCCCCccccc--ccCCCceeeEEEcCCCCEEEEecccceeeeehhcccc---eecceec-cCCceeeeeec
Confidence            8899999  7777755544  3456778899999999999999999999999654432   1222222 23599999999


Q ss_pred             CCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEe------cCCCCCCCCeEEEEEecCCCEEEEeeC
Q psy11529        157 PNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVEL------NNSSSGGGWIHSVAFSKDGNKLCWTSH  230 (244)
Q Consensus       157 p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~v~~~~~s~~~~~l~~~~~  230 (244)
                      |+|++|+..+. |.-++|.+.-.........   ......-.++..+      .+..-..+.+.+++|.|.|.+|++.-.
T Consensus       290 pcGsfLLf~~s-gsp~lysl~f~~~~~~~~~---~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fK  365 (445)
T KOG2139|consen  290 PCGSFLLFACS-GSPRLYSLTFDGEDSVFLR---PQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFK  365 (445)
T ss_pred             CCCCEEEEEEc-CCceEEEEeecCCCccccC---cccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEc
Confidence            99987665443 3445666632211110000   0000001111111      110011567899999999999998755


Q ss_pred             CC--------cEEEEeCCCCC
Q psy11529        231 DG--------SINVRMSQQVL  243 (244)
Q Consensus       231 dg--------~i~vwd~~~~~  243 (244)
                      .+        .|.+||.++..
T Consensus       366 g~~~v~~~k~~i~~fdtr~sp  386 (445)
T KOG2139|consen  366 GQSFVLLCKLHISRFDTRKSP  386 (445)
T ss_pred             CCchhhhhhhhhhhhcccccC
Confidence            43        36677776653

>KOG2139|consensus

Probab=99.76  E-value=2.1e-16  Score=113.57  Aligned_cols=188  Identities=14%  Similarity=0.214  Sum_probs=134.7

Q ss_pred             CCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeecc-CCCceEEEEeCC-CCCeEEEEeCCccEEEEeeeC
Q psy11529          9 INPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDG-HDLKVTGIDWAP-NTNRIVTCSADRNAYVWTQNN   86 (244)
Q Consensus         9 ~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~   86 (244)
                      +-.+..++|++.-..+|++..|..|++|+-..     .....++. ....|++++|-| .++.|+.|+. +-|.+|..+ 
T Consensus        98 ~~dlr~~aWhqH~~~fava~nddvVriy~kss-----t~pt~Lks~sQrnvtclawRPlsaselavgCr-~gIciW~~s-  170 (445)
T KOG2139|consen   98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-----TCPTKLKSVSQRNVTCLAWRPLSASELAVGCR-AGICIWSDS-  170 (445)
T ss_pred             hcceeeEeechhhhhhhhhccCcEEEEeccCC-----CCCceecchhhcceeEEEeccCCcceeeeeec-ceeEEEEcC-
Confidence            45678899999777788999999999999876     34444442 356899999999 4556777765 458999842 


Q ss_pred             CCCCc-----------eeeEEEeccCcceEEEEECCCCCeEEEeeC-CCeEEEEEeecCCCceEEEeeecCCCCceeEEE
Q psy11529         87 DDKKW-----------KPTLVLLRINRAATCVKWSPLENKFAAGSG-ARLISVCYFESENDWWVAKHIKKPIKSTITCLD  154 (244)
Q Consensus        87 ~~~~~-----------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~  154 (244)
                      .+...           ...+.-+ ....|++++|++||..+++++- |..|.|||.+++..    ........+.++-+.
T Consensus       171 ~tln~~r~~~~~s~~~~qvl~~p-gh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~----~pL~~~glgg~slLk  245 (445)
T KOG2139|consen  171 RTLNANRNIRMMSTHHLQVLQDP-GHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQK----IPLIPKGLGGFSLLK  245 (445)
T ss_pred             cccccccccccccccchhheeCC-CCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCc----ccccccCCCceeeEE
Confidence            11111           1112222 2368999999999999988765 77899999999976    222222346888999


Q ss_pred             ecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEee
Q psy11529        155 WHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTS  229 (244)
Q Consensus       155 ~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~  229 (244)
                      |+|||.+|..++-|+..++|+..                 .......-..+    .+.|....|+|+|++|+...
T Consensus       246 wSPdgd~lfaAt~davfrlw~e~-----------------q~wt~erw~lg----sgrvqtacWspcGsfLLf~~  299 (445)
T KOG2139|consen  246 WSPDGDVLFAATCDAVFRLWQEN-----------------QSWTKERWILG----SGRVQTACWSPCGSFLLFAC  299 (445)
T ss_pred             EcCCCCEEEEecccceeeeehhc-----------------ccceecceecc----CCceeeeeecCCCCEEEEEE
Confidence            99999999999999999999652                 22222222223    56899999999999765543

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.76  E-value=6.6e-16  Score=120.39  Aligned_cols=178  Identities=13%  Similarity=0.149  Sum_probs=117.3

Q ss_pred             CeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCC---ccEEEEeeeCCCCCceeeEEEeccCcceEEE
Q psy11529         31 QEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSAD---RNAYVWTQNNDDKKWKPTLVLLRINRAATCV  107 (244)
Q Consensus        31 ~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~  107 (244)
                      ..|.++|.++     .....+..+...+.+.+|+|||+.|+..+.+   ..|.+||  +.+++...   +..........
T Consensus       176 ~~L~~~D~dG-----~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~d--l~~g~~~~---l~~~~g~~~~~  245 (427)
T PRK02889        176 YQLQISDADG-----QNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHD--LATGRRRV---VANFKGSNSAP  245 (427)
T ss_pred             cEEEEECCCC-----CCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEE--CCCCCEEE---eecCCCCccce
Confidence            4677777755     3344455677889999999999999877643   4599999  77776332   22334556789


Q ss_pred             EECCCCCeEEE-eeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEeeC-CCeEEEEEeeecccccCC
Q psy11529        108 KWSPLENKFAA-GSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGST-DFKVRVFSAYIKDIESAP  185 (244)
Q Consensus       108 ~~~~~~~~l~~-~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~-dg~i~i~d~~~~~~~~~~  185 (244)
                      +|+|||+.|+. .+.++...||.++....  . ......+........|+|||+.|+..+. +|...+|.+..       
T Consensus       246 ~~SPDG~~la~~~~~~g~~~Iy~~d~~~~--~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~-------  315 (427)
T PRK02889        246 AWSPDGRTLAVALSRDGNSQIYTVNADGS--G-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPA-------  315 (427)
T ss_pred             EECCCCCEEEEEEccCCCceEEEEECCCC--C-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEEC-------
Confidence            99999998875 56788877877765432  1 1222333445667899999998876654 46667776631       


Q ss_pred             CCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCC---cEEEEeCCC
Q psy11529        186 QSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDG---SINVRMSQQ  241 (244)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg---~i~vwd~~~  241 (244)
                               ..++ ...+..+   .......+|+|||++|+..+.++   .|.+||+.+
T Consensus       316 ---------~~g~-~~~lt~~---g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~  361 (427)
T PRK02889        316 ---------SGGA-AQRVTFT---GSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLAT  361 (427)
T ss_pred             ---------CCCc-eEEEecC---CCCcCceEECCCCCEEEEEEccCCcEEEEEEECCC
Confidence                     1121 1112222   23344678999999998776554   699999864

>KOG1517|consensus

Probab=99.76  E-value=3.1e-16  Score=126.47  Aligned_cols=212  Identities=10%  Similarity=0.075  Sum_probs=144.4

Q ss_pred             CCceEEEEEcC--CCCeEEEecCCCeEEEeeeccCC-CcceeeeeeccC-------CCceEEEEeCCCCCeEEEEeCCcc
Q psy11529          9 INPVTTHAWNN--TRQQLAFTPNNQEVHLYQYEKAA-NDWSQLDVLDGH-------DLKVTGIDWAPNTNRIVTCSADRN   78 (244)
Q Consensus         9 ~~~v~~~~~~~--~~~~l~~~~~d~~v~v~~~~~~~-~~~~~~~~~~~~-------~~~v~~~~~~~~~~~l~~~~~d~~   78 (244)
                      ...|+.+.+-.  |..++++|+.||.|+||+-..+. ++.+.+..+.+-       .+.-.-++|.....+|+++++-..
T Consensus      1109 ~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~ 1188 (1387)
T KOG1517|consen 1109 DTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRS 1188 (1387)
T ss_pred             CCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeE
Confidence            56788888866  45589999999999999853321 222444333221       111244678886666676666889


Q ss_pred             EEEEeeeCCCCCceeeEEEeccCcceEEEEECC-CCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCc--eeEEEe
Q psy11529         79 AYVWTQNNDDKKWKPTLVLLRINRAATCVKWSP-LENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKST--ITCLDW  155 (244)
Q Consensus        79 i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~--v~~~~~  155 (244)
                      |+|||  ....... .-...+....++++.-+. .|+.+++|..||.+++||.+..... ........|...  |..+.+
T Consensus      1189 IRIWD--a~~E~~~-~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~d-s~v~~~R~h~~~~~Iv~~sl 1264 (1387)
T KOG1517|consen 1189 IRIWD--AHKEQVV-ADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPD-SLVCVYREHNDVEPIVHLSL 1264 (1387)
T ss_pred             EEEEe--cccceeE-eecccCCCccceeecccccCCceEEEeecCCceEEeecccCCcc-ccceeecccCCcccceeEEe
Confidence            99999  5444322 222233455566665543 3799999999999999999877542 233445566655  999999


Q ss_pred             cCCCC-EEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcE
Q psy11529        156 HPNNH-LLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSI  234 (244)
Q Consensus       156 ~p~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i  234 (244)
                      .+.|- .|++|+.+|.|++||+|...                .+.......|...++..+++..+++...+|+|+. +.|
T Consensus      1265 q~~G~~elvSgs~~G~I~~~DlR~~~----------------~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~i 1327 (1387)
T KOG1517|consen 1265 QRQGLGELVSGSQDGDIQLLDLRMSS----------------KETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLI 1327 (1387)
T ss_pred             ecCCCcceeeeccCCeEEEEecccCc----------------ccccceeeeccccCccceeeeeccCCCeeeecCc-ceE
Confidence            99775 59999999999999997431                1112222222111345999999999999999998 999


Q ss_pred             EEEeCCC
Q psy11529        235 NVRMSQQ  241 (244)
Q Consensus       235 ~vwd~~~  241 (244)
                      +||++..
T Consensus      1328 kIy~~~G 1334 (1387)
T KOG1517|consen 1328 KIYSLSG 1334 (1387)
T ss_pred             EEEecCh
Confidence            9999863

>KOG0771|consensus

Probab=99.75  E-value=4e-17  Score=118.97  Aligned_cols=161  Identities=15%  Similarity=0.136  Sum_probs=117.3

Q ss_pred             EEEEeCCCCCeEEEEeCCccEEEEeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceE
Q psy11529         59 TGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWV  138 (244)
Q Consensus        59 ~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~  138 (244)
                      ..++|+.+|..+++++.||++++|+  ..+..  .......|...|.++.|+|||+.|++.+.| ..+||+.+++..  .
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~--~Ps~~--t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~--~  220 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWE--WPSML--TILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAA--L  220 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEe--cCcch--hhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCch--h
Confidence            5789999999999999999999999  55543  244556789999999999999999999999 899999999854  1


Q ss_pred             EEeeecCCCCceeEEEecCCC---CE--EEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCe
Q psy11529        139 AKHIKKPIKSTITCLDWHPNN---HL--LGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWI  213 (244)
Q Consensus       139 ~~~~~~~~~~~v~~~~~~p~~---~~--l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  213 (244)
                      ........+.....+.|+.|+   .+  ++.-..-+.|+.||+....-.            ...+.......    ...|
T Consensus       221 a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~------------~~l~~~~~~~~----~~si  284 (398)
T KOG0771|consen  221 ARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGS------------NFLRLRKKIKR----FKSI  284 (398)
T ss_pred             hhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccc------------cccchhhhhhc----cCcc
Confidence            111112233456778888776   32  333334567888887432210            11111222222    4579


Q ss_pred             EEEEEecCCCEEEEeeCCCcEEEEeCCCC
Q psy11529        214 HSVAFSKDGNKLCWTSHDGSINVRMSQQV  242 (244)
Q Consensus       214 ~~~~~s~~~~~l~~~~~dg~i~vwd~~~~  242 (244)
                      ++++.++||++++.|+.||.|.|++..++
T Consensus       285 Ssl~VS~dGkf~AlGT~dGsVai~~~~~l  313 (398)
T KOG0771|consen  285 SSLAVSDDGKFLALGTMDGSVAIYDAKSL  313 (398)
T ss_pred             eeEEEcCCCcEEEEeccCCcEEEEEecee
Confidence            99999999999999999999999998765

>KOG2111|consensus

Probab=99.75  E-value=2.2e-14  Score=101.50  Aligned_cols=215  Identities=12%  Similarity=0.104  Sum_probs=139.2

Q ss_pred             CCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccC--CCceEEEEeCCCCCeEEE-EeCCccEEEEeee
Q psy11529          9 INPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGH--DLKVTGIDWAPNTNRIVT-CSADRNAYVWTQN   85 (244)
Q Consensus         9 ~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~-~~~d~~i~iwd~~   85 (244)
                      ..+|.++.+.++  +|++.. .+.|+||...+.   ++.++.+...  .....+++-+.+..+||. |-.-|.|+|-|  
T Consensus        94 ~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n---~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~d--  165 (346)
T KOG2111|consen   94 NSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDN---PKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVD--  165 (346)
T ss_pred             ccceeeEEEcCC--eEEEEe-cCeEEEEEcCCC---hhheeeeecccCCCceEeecCCCCceEEEcCCCccceEEEEE--
Confidence            578888888875  566654 578999998751   2444444322  233333332324445543 34469999999  


Q ss_pred             CCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCe-EEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEE
Q psy11529         86 NDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARL-ISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGC  164 (244)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~-i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~  164 (244)
                      +...+......+..|.+.|.|++.+.+|..+|+++..|+ |+|||..+++...+.  ........+.+++|+|+..+|++
T Consensus       166 L~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~--RRG~d~A~iy~iaFSp~~s~Lav  243 (346)
T KOG2111|consen  166 LASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQEL--RRGVDRADIYCIAFSPNSSWLAV  243 (346)
T ss_pred             hhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeee--ecCCchheEEEEEeCCCccEEEE
Confidence            555443345667899999999999999999999999886 789999999863332  22334578999999999999999


Q ss_pred             eeCCCeEEEEEeeecccccC--CCCC----CCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEE
Q psy11529        165 GSTDFKVRVFSAYIKDIESA--PQST----NWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINV  236 (244)
Q Consensus       165 ~~~dg~i~i~d~~~~~~~~~--~~~~----~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v  236 (244)
                      +++.|+++||.++.......  ....    ...........+..+...   .++..-++|-.+.+.++..+.||+-+-
T Consensus       244 sSdKgTlHiF~l~~~~~~~~~~SSl~~~~~~lpky~~S~wS~~~f~l~---~~~~~~~~fg~~~nsvi~i~~Dgsy~k  318 (346)
T KOG2111|consen  244 SSDKGTLHIFSLRDTENTEDESSSLSFKRLVLPKYFSSEWSFAKFQLP---QGTQCIIAFGSETNTVIAICADGSYYK  318 (346)
T ss_pred             EcCCCeEEEEEeecCCCCccccccccccccccchhcccceeEEEEEcc---CCCcEEEEecCCCCeEEEEEeCCcEEE
Confidence            99999999999975432221  0000    000000111223333333   455666777776555666667776443

>KOG0642|consensus

Probab=99.74  E-value=8.4e-17  Score=121.36  Aligned_cols=166  Identities=18%  Similarity=0.199  Sum_probs=132.4

Q ss_pred             EEeCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCC------CcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCcc
Q psy11529          5 YSFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAA------NDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRN   78 (244)
Q Consensus         5 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~   78 (244)
                      +..|.++|.|+++.++++.+.+|+-||+|+.|++....      ........+.||.+.|+.+++|+....|++++.||+
T Consensus       340 fraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgT  419 (577)
T KOG0642|consen  340 FRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGT  419 (577)
T ss_pred             EecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCce
Confidence            34579999999999999999999999999999764211      011345678899999999999998889999999999


Q ss_pred             EEEEeeeCCCCCce----------ee-------------------------------EEEe--------ccCcceEEEEE
Q psy11529         79 AYVWTQNNDDKKWK----------PT-------------------------------LVLL--------RINRAATCVKW  109 (244)
Q Consensus        79 i~iwd~~~~~~~~~----------~~-------------------------------~~~~--------~~~~~v~~~~~  109 (244)
                      +++|+.  ......          +.                               +.+.        .....+..+.+
T Consensus       420 vr~w~~--~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs  497 (577)
T KOG0642|consen  420 VRLWEP--TEESPCTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVS  497 (577)
T ss_pred             EEeecc--CCcCccccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEe
Confidence            999983  222110          00                               0000        01134667888


Q ss_pred             CCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEeeCCCeEEEEEe
Q psy11529        110 SPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSA  176 (244)
Q Consensus       110 ~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~i~i~d~  176 (244)
                      +|.....+++..|+.|+++|..++..    ......|...++++++.|+|-+|++++.|+.+++|.+
T Consensus       498 ~~~~~~~~~~hed~~Ir~~dn~~~~~----l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kl  560 (577)
T KOG0642|consen  498 HPTADITFTAHEDRSIRFFDNKTGKI----LHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKL  560 (577)
T ss_pred             cCCCCeeEecccCCceeccccccccc----chheeeccceecceeecCCCceEEeecCCceeehhhc
Confidence            99999999999999999999998875    5666778889999999999999999999999999998

>KOG1517|consensus

Probab=99.74  E-value=3.3e-16  Score=126.31  Aligned_cols=207  Identities=14%  Similarity=0.144  Sum_probs=143.6

Q ss_pred             EEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeec-cCCCceEEEEeCC-CCCeEEEEeCCccEEEEeeeCCCCCc
Q psy11529         14 THAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLD-GHDLKVTGIDWAP-NTNRIVTCSADRNAYVWTQNNDDKKW   91 (244)
Q Consensus        14 ~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~   91 (244)
                      -++|.....+|++++.-..|+|||...  +  .....+. +....|+++.-+. .|+.+++|..||.|++||.+....+.
T Consensus      1170 v~dWqQ~~G~Ll~tGd~r~IRIWDa~~--E--~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds 1245 (1387)
T KOG1517|consen 1170 VVDWQQQSGHLLVTGDVRSIRIWDAHK--E--QVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDS 1245 (1387)
T ss_pred             eeehhhhCCeEEecCCeeEEEEEeccc--c--eeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccc
Confidence            356777655666666678999999987  3  4444443 3455677776554 57899999999999999964433321


Q ss_pred             eeeEEEeccCcc--eEEEEECCCCC-eEEEeeCCCeEEEEEeecCCCceEEEeee-cCCCCceeEEEecCCCCEEEEeeC
Q psy11529         92 KPTLVLLRINRA--ATCVKWSPLEN-KFAAGSGARLISVCYFESENDWWVAKHIK-KPIKSTITCLDWHPNNHLLGCGST  167 (244)
Q Consensus        92 ~~~~~~~~~~~~--v~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-~~~~~~v~~~~~~p~~~~l~~~~~  167 (244)
                       .......|...  |..+.+.+.|- .|++|+.+|.|++||++............ ....+..+++..+++...+|+|+.
T Consensus      1246 -~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~ 1324 (1387)
T KOG1517|consen 1246 -LVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA 1324 (1387)
T ss_pred             -cceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc
Confidence             12333456665  99999988764 49999999999999999853211111111 111235999999999999999998


Q ss_pred             CCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCC
Q psy11529        168 DFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQ  241 (244)
Q Consensus       168 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~  241 (244)
                       +.|+||++....+..             .+....+.+..  .+.+.+++|+|.--+||+|+.|.+|.||...+
T Consensus      1325 -q~ikIy~~~G~~l~~-------------~k~n~~F~~q~--~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k 1382 (1387)
T KOG1517|consen 1325 -QLIKIYSLSGEQLNI-------------IKYNPGFMGQR--IGSVSCLAFHPHRLLLAAGSADSTVSIYSCEK 1382 (1387)
T ss_pred             -ceEEEEecChhhhcc-------------cccCcccccCc--CCCcceeeecchhHhhhhccCCceEEEeecCC
Confidence             999999984322210             11111122221  56789999999999999999999999998765

>KOG1240|consensus

Probab=99.74  E-value=1e-15  Score=125.16  Aligned_cols=213  Identities=9%  Similarity=0.066  Sum_probs=149.9

Q ss_pred             CCCceEEEEEcCC-CCeEEEecCCCeEEEeeeccCC---CcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEe
Q psy11529          8 GINPVTTHAWNNT-RQQLAFTPNNQEVHLYQYEKAA---NDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWT   83 (244)
Q Consensus         8 ~~~~v~~~~~~~~-~~~l~~~~~d~~v~v~~~~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd   83 (244)
                      |...|..++.+++ +.+|++|+.||+|++|+...-.   +..+...++..-...+.++...+.+..+|.++.||.|++.+
T Consensus      1047 hs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~ 1126 (1431)
T KOG1240|consen 1047 HSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLR 1126 (1431)
T ss_pred             ccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEE
Confidence            4667777877765 5899999999999999985411   22344455554578899999999999999999999999999


Q ss_pred             eeCCCCC-ceee--EEEe-ccCcc-eEEEEECCC-CC-eEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEec
Q psy11529         84 QNNDDKK-WKPT--LVLL-RINRA-ATCVKWSPL-EN-KFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWH  156 (244)
Q Consensus        84 ~~~~~~~-~~~~--~~~~-~~~~~-v~~~~~~~~-~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~  156 (244)
                      ++..... ....  .... ...+. +..-+|... +. .++.+..-+.+..||.+.....|..+..  ...+.|++++.+
T Consensus      1127 id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~--~~hG~vTSi~id 1204 (1431)
T KOG1240|consen 1127 IDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQ--LRHGLVTSIVID 1204 (1431)
T ss_pred             ccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcC--ccccceeEEEec
Confidence            5331121 1111  1111 11222 334444433 33 6888899999999999988764444332  334899999999


Q ss_pred             CCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCC---CEEEEee--CC
Q psy11529        157 PNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDG---NKLCWTS--HD  231 (244)
Q Consensus       157 p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~---~~l~~~~--~d  231 (244)
                      |.++++++|+..|.+.+||+                  +.+.++.++....  ..+++.+..+|-.   ...++++  ..
T Consensus      1205 p~~~WlviGts~G~l~lWDL------------------RF~~~i~sw~~P~--~~~i~~v~~~~~~~~~S~~vs~~~~~~ 1264 (1431)
T KOG1240|consen 1205 PWCNWLVIGTSRGQLVLWDL------------------RFRVPILSWEHPA--RAPIRHVWLCPTYPQESVSVSAGSSSN 1264 (1431)
T ss_pred             CCceEEEEecCCceEEEEEe------------------ecCceeecccCcc--cCCcceEEeeccCCCCceEEEecccCC
Confidence            99999999999999999999                  4566666665432  6788888887732   3554444  46


Q ss_pred             CcEEEEeCCCC
Q psy11529        232 GSINVRMSQQV  242 (244)
Q Consensus       232 g~i~vwd~~~~  242 (244)
                      +.|.+|++.+.
T Consensus      1265 nevs~wn~~~g 1275 (1431)
T KOG1240|consen 1265 NEVSTWNMETG 1275 (1431)
T ss_pred             CceeeeecccC
Confidence            78999998764

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.73  E-value=3.5e-15  Score=116.66  Aligned_cols=194  Identities=18%  Similarity=0.239  Sum_probs=125.7

Q ss_pred             CCceEEEEEcCCCCeEEEecCC---CeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEE-EeCCc--cEEEE
Q psy11529          9 INPVTTHAWNNTRQQLAFTPNN---QEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVT-CSADR--NAYVW   82 (244)
Q Consensus         9 ~~~v~~~~~~~~~~~l~~~~~d---~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d~--~i~iw   82 (244)
                      ...+...+|+|||++|+++..+   ..|++|++.+  +   ....+..+.+.+.+++|+|+|+.|+. .+.++  .|++|
T Consensus       189 ~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~--g---~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~  263 (417)
T TIGR02800       189 REPILSPAWSPDGQKLAYVSFESGKPEIYVQDLAT--G---QREKVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVM  263 (417)
T ss_pred             CCceecccCCCCCCEEEEEEcCCCCcEEEEEECCC--C---CEEEeecCCCCccceEECCCCCEEEEEECCCCCccEEEE
Confidence            4468889999999999887643   4799999977  3   22233345566777999999997764 44444  57788


Q ss_pred             eeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeC-CC--eEEEEEeecCCCceEEEeeecCCCCceeEEEecCCC
Q psy11529         83 TQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSG-AR--LISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNN  159 (244)
Q Consensus        83 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~--~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~  159 (244)
                      |  +.++...   .+..+........|+|+++.|+..+. ++  .|.++++..++.    . ...........+.|+|+|
T Consensus       264 d--~~~~~~~---~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~----~-~l~~~~~~~~~~~~spdg  333 (417)
T TIGR02800       264 D--LDGKQLT---RLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEV----R-RLTFRGGYNASPSWSPDG  333 (417)
T ss_pred             E--CCCCCEE---ECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCE----E-EeecCCCCccCeEECCCC
Confidence            8  6666532   22334444557799999998877654 33  466666554432    1 122233566788999999


Q ss_pred             CEEEEeeCCC---eEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCC---c
Q psy11529        160 HLLGCGSTDF---KVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDG---S  233 (244)
Q Consensus       160 ~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg---~  233 (244)
                      ++++.++.++   .|.+||+.                  .+. ...+..    ........|+|||++|+..+.++   .
T Consensus       334 ~~i~~~~~~~~~~~i~~~d~~------------------~~~-~~~l~~----~~~~~~p~~spdg~~l~~~~~~~~~~~  390 (417)
T TIGR02800       334 DLIAFVHREGGGFNIAVMDLD------------------GGG-ERVLTD----TGLDESPSFAPNGRMILYATTRGGRGV  390 (417)
T ss_pred             CEEEEEEccCCceEEEEEeCC------------------CCC-eEEccC----CCCCCCceECCCCCEEEEEEeCCCcEE
Confidence            9998887765   78888873                  222 222222    12234568999999888776654   3


Q ss_pred             EEEEeCC
Q psy11529        234 INVRMSQ  240 (244)
Q Consensus       234 i~vwd~~  240 (244)
                      +.+.+..
T Consensus       391 l~~~~~~  397 (417)
T TIGR02800       391 LGLVSTD  397 (417)
T ss_pred             EEEEECC
Confidence            5555543

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.73  E-value=5.5e-15  Score=115.74  Aligned_cols=173  Identities=16%  Similarity=0.150  Sum_probs=118.6

Q ss_pred             CeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeC---CccEEEEeeeCCCCCceeeEEEeccCcceEEE
Q psy11529         31 QEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSA---DRNAYVWTQNNDDKKWKPTLVLLRINRAATCV  107 (244)
Q Consensus        31 ~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~  107 (244)
                      ..|.++|.++     .....+..|...+.+.+|+|||+.|+..+.   +..|.+||  +.+++..   .+......+...
T Consensus       182 ~~l~~~d~dg-----~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~d--l~~g~~~---~l~~~~g~~~~~  251 (435)
T PRK05137        182 KRLAIMDQDG-----ANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLD--LETGQRE---LVGNFPGMTFAP  251 (435)
T ss_pred             eEEEEECCCC-----CCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEE--CCCCcEE---EeecCCCcccCc
Confidence            4788888866     444566678889999999999999887754   46899999  7777632   233455667789


Q ss_pred             EECCCCCeEEE-eeCCCe--EEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEeeC-CC--eEEEEEeeeccc
Q psy11529        108 KWSPLENKFAA-GSGARL--ISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGST-DF--KVRVFSAYIKDI  181 (244)
Q Consensus       108 ~~~~~~~~l~~-~~~d~~--i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~-dg--~i~i~d~~~~~~  181 (244)
                      +|+|||+.|+. .+.++.  |.+||++++..     .....+........|+|||+.|+..+. +|  .|+++|+     
T Consensus       252 ~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~-----~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~-----  321 (435)
T PRK05137        252 RFSPDGRKVVMSLSQGGNTDIYTMDLRSGTT-----TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNA-----  321 (435)
T ss_pred             EECCCCCEEEEEEecCCCceEEEEECCCCce-----EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEEC-----
Confidence            99999988764 455555  55556665542     223334455677999999998887764 33  5777776     


Q ss_pred             ccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCC---CcEEEEeCC
Q psy11529        182 ESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHD---GSINVRMSQ  240 (244)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~vwd~~  240 (244)
                                   ..++ ...+..+   ...+..+.|+|||++|+..+.+   ..|.+||+.
T Consensus       322 -------------~g~~-~~~lt~~---~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~  366 (435)
T PRK05137        322 -------------DGSN-PRRISFG---GGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPD  366 (435)
T ss_pred             -------------CCCC-eEEeecC---CCcccCeEECCCCCEEEEEEcCCCceEEEEEECC
Confidence                         2222 2233322   4456678999999998876543   358888874

>KOG1587|consensus

Probab=99.72  E-value=1.9e-15  Score=118.37  Aligned_cols=186  Identities=15%  Similarity=0.165  Sum_probs=129.7

Q ss_pred             CeEEEeeeccCCCcceeeeeeccCCCceEEEEeCC-CCCeEEEEeCCccEEEEeeeCCCCCce--e--eEEEeccCcceE
Q psy11529         31 QEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAP-NTNRIVTCSADRNAYVWTQNNDDKKWK--P--TLVLLRINRAAT  105 (244)
Q Consensus        31 ~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~--~--~~~~~~~~~~v~  105 (244)
                      +.+.||++..+   ..+...+. -...|.+++|+| +..+++.|+.+|.|.+||  +..+...  .  ......|...+.
T Consensus       222 ~~~~vW~~~~p---~~Pe~~~~-~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD--~~~~~~~~~s~ls~~~~sh~~~v~  295 (555)
T KOG1587|consen  222 GVLLVWSLKNP---NTPELVLE-SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWD--LRKGSDTPPSGLSALEVSHSEPVT  295 (555)
T ss_pred             ceEEEEecCCC---CCceEEEe-cCCceeEEEeccCCcceEEeeccCceEEEEE--ccCCCCCCCcccccccccCCcCeE
Confidence            47999999873   24555555 578899999999 677888899999999999  5554431  1  122345788999


Q ss_pred             EEEECCCC--CeEEEeeCCCeEEEEEeecCCC--------------------------------------------ce--
Q psy11529        106 CVKWSPLE--NKFAAGSGARLISVCYFESEND--------------------------------------------WW--  137 (244)
Q Consensus       106 ~~~~~~~~--~~l~~~~~d~~i~i~d~~~~~~--------------------------------------------~~--  137 (244)
                      .+.|..+.  .-+++++.||.|..|+++.-..                                            ..  
T Consensus       296 ~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~  375 (555)
T KOG1587|consen  296 AVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKG  375 (555)
T ss_pred             EEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEE
Confidence            99997654  4499999999999998754322                                            00  


Q ss_pred             -------------EEEeeecCCCCceeEEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEec
Q psy11529        138 -------------VAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELN  204 (244)
Q Consensus       138 -------------~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (244)
                                   ........|.+.|.++.++|=+..++..+.|.+++||...                 ....++..+.
T Consensus       376 ~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~-----------------~~~~Pl~~~~  438 (555)
T KOG1587|consen  376 CRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSED-----------------VIASPLLSLD  438 (555)
T ss_pred             eccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEecccc-----------------CCCCcchhhh
Confidence                         0001112235677778888755433333337888888762                 1455666666


Q ss_pred             CCCCCCCCeEEEEEecCCC-EEEEeeCCCcEEEEeCCCC
Q psy11529        205 NSSSGGGWIHSVAFSKDGN-KLCWTSHDGSINVRMSQQV  242 (244)
Q Consensus       205 ~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~vwd~~~~  242 (244)
                      .+   ...+++++|||... .++++..||.|.+||+...
T Consensus       439 ~~---~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~  474 (555)
T KOG1587|consen  439 SS---PDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQD  474 (555)
T ss_pred             hc---cceeeeeEEcCcCceEEEEEcCCCceehhhhhcc
Confidence            65   66799999999654 7788888999999999753

>KOG1354|consensus

Probab=99.72  E-value=8.4e-16  Score=109.84  Aligned_cols=225  Identities=15%  Similarity=0.189  Sum_probs=149.8

Q ss_pred             CCceEEEEEcCCCCeEEEecCCCeEEEeeeccCC-CcceeeeeeccCC------------CceEEEEeCCCCC--eEEEE
Q psy11529          9 INPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAA-NDWSQLDVLDGHD------------LKVTGIDWAPNTN--RIVTC   73 (244)
Q Consensus         9 ~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~-~~~~~~~~~~~~~------------~~v~~~~~~~~~~--~l~~~   73 (244)
                      .+-|.++.|...|.+||+|..+|.|.+|.-+... +++.....++.|+            .+|+.+.|.++++  .++..
T Consensus        25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls  104 (433)
T KOG1354|consen   25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS  104 (433)
T ss_pred             hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence            4678999999999999999999999999865421 1222333444443            5788999998554  56677


Q ss_pred             eCCccEEEEeeeCCCCCc------------------eee--------------EEEeccCcceEEEEECCCCCeEEEeeC
Q psy11529         74 SADRNAYVWTQNNDDKKW------------------KPT--------------LVLLRINRAATCVKWSPLENKFAAGSG  121 (244)
Q Consensus        74 ~~d~~i~iwd~~~~~~~~------------------~~~--------------~~~~~~~~~v~~~~~~~~~~~l~~~~~  121 (244)
                      +.|.+|++|.+..+..+.                  .+.              .....|.-.++++.++.|+..++++ +
T Consensus       105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA-D  183 (433)
T KOG1354|consen  105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA-D  183 (433)
T ss_pred             cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec-c
Confidence            789999999964222111                  000              0112466678999999998888775 5


Q ss_pred             CCeEEEEEeecCCCceEEEeeecCC-----CCceeEEEecCC-CCEEEEeeCCCeEEEEEeeecccccCCCCCCCCcccc
Q psy11529        122 ARLISVCYFESENDWWVAKHIKKPI-----KSTITCLDWHPN-NHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKST  195 (244)
Q Consensus       122 d~~i~i~d~~~~~~~~~~~~~~~~~-----~~~v~~~~~~p~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~  195 (244)
                      |-.|.+|+++-..+-+...-. +++     ..-|++..|+|. .+.++..+..|+|++-|+|...+............  
T Consensus       184 dLRINLWnlei~d~sFnIVDI-KP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepe--  260 (433)
T KOG1354|consen  184 DLRINLWNLEIIDQSFNIVDI-KPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPE--  260 (433)
T ss_pred             ceeeeeccccccCCceeEEEc-cccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhcccc--
Confidence            778999999876652322222 222     346899999994 57888999999999999986655432211111100  


Q ss_pred             ccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCC
Q psy11529        196 LGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQ  241 (244)
Q Consensus       196 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~  241 (244)
                      .+....-+..-   -..|..+.|+++|+|+++-. =-+|++||+..
T Consensus       261 dp~~rsffsei---IsSISDvKFs~sGryilsRD-yltvk~wD~nm  302 (433)
T KOG1354|consen  261 DPSSRSFFSEI---ISSISDVKFSHSGRYILSRD-YLTVKLWDLNM  302 (433)
T ss_pred             CCcchhhHHHH---hhhhhceEEccCCcEEEEec-cceeEEEeccc
Confidence            00011111111   45689999999999999764 35899999953

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.72  E-value=7.8e-15  Score=114.35  Aligned_cols=176  Identities=16%  Similarity=0.185  Sum_probs=116.1

Q ss_pred             CeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeC---CccEEEEeeeCCCCCceeeEEEeccCcceEEE
Q psy11529         31 QEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSA---DRNAYVWTQNNDDKKWKPTLVLLRINRAATCV  107 (244)
Q Consensus        31 ~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~  107 (244)
                      ..|.++|.++  .   ....+..+...+.+.+|+|||+.|+..+.   +..+.+|+  +.+++.....   ........+
T Consensus       179 ~~l~~~d~dg--~---~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~d--l~~G~~~~l~---~~~~~~~~~  248 (429)
T PRK03629        179 YELRVSDYDG--Y---NQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQT--LANGAVRQVA---SFPRHNGAP  248 (429)
T ss_pred             eeEEEEcCCC--C---CCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEE--CCCCCeEEcc---CCCCCcCCe
Confidence            3788888877  2   33344556778999999999999886542   45788999  6777633322   233445578


Q ss_pred             EECCCCCeEEEe-eCCC--eEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEeeCC-CeEEEEEeeeccccc
Q psy11529        108 KWSPLENKFAAG-SGAR--LISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTD-FKVRVFSAYIKDIES  183 (244)
Q Consensus       108 ~~~~~~~~l~~~-~~d~--~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d-g~i~i~d~~~~~~~~  183 (244)
                      +|+|||+.|+.. +.++  .|.+||+++++.    .. .......+....|+|||+.|+..+.+ +...||.+..     
T Consensus       249 ~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~----~~-lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~-----  318 (429)
T PRK03629        249 AFSPDGSKLAFALSKTGSLNLYVMDLASGQI----RQ-VTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNI-----  318 (429)
T ss_pred             EECCCCCEEEEEEcCCCCcEEEEEECCCCCE----EE-ccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEEC-----
Confidence            999999988865 3344  578888877643    22 22334567889999999988777654 4455554421     


Q ss_pred             CCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCC---CcEEEEeCCC
Q psy11529        184 APQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHD---GSINVRMSQQ  241 (244)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~vwd~~~  241 (244)
                                 ..++ ...+...   ........|+|||++|+..+.+   ..|.+||+++
T Consensus       319 -----------~~g~-~~~lt~~---~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~  364 (429)
T PRK03629        319 -----------NGGA-PQRITWE---GSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLAT  364 (429)
T ss_pred             -----------CCCC-eEEeecC---CCCccCEEECCCCCEEEEEEccCCCceEEEEECCC
Confidence                       2222 2223332   4445678999999998876543   3588888864

>KOG0644|consensus

Probab=99.72  E-value=2.4e-17  Score=129.72  Aligned_cols=201  Identities=17%  Similarity=0.248  Sum_probs=139.9

Q ss_pred             eCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeC
Q psy11529          7 FGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNN   86 (244)
Q Consensus         7 ~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~   86 (244)
                      -|.+.|+.++.+.++.++++++.|..|++|.+..  +  .++..+.+|++.|++++|+|-.    +.+.||++++||.++
T Consensus       230 Ghs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~--~--~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~  301 (1113)
T KOG0644|consen  230 GHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPD--G--APVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARL  301 (1113)
T ss_pred             CCccccchhccchhhhhhhhcccCceEEEEecCC--C--chHHHHhccccceeeeccCccc----cCCCCCceEeccccc
Confidence            3578899999999999999999999999999987  5  7889999999999999999943    778899999999542


Q ss_pred             CCCCceeeEEEeccCcceEEEEECCCCCeEEEee-------------------------------------CCCeEEEEE
Q psy11529         87 DDKKWKPTLVLLRINRAATCVKWSPLENKFAAGS-------------------------------------GARLISVCY  129 (244)
Q Consensus        87 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-------------------------------------~d~~i~i~d  129 (244)
                      ......+...-......+.++.|...+..+++++                                     .+-.+++|+
T Consensus       302 ~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwn  381 (1113)
T KOG0644|consen  302 EPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWN  381 (1113)
T ss_pred             cccccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeee
Confidence            2221111100000112222222222222222222                                     234456666


Q ss_pred             eecCCCceEEEeeecCCCCceeEEEecCCC-CEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCC
Q psy11529        130 FESENDWWVAKHIKKPIKSTITCLDWHPNN-HLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSS  208 (244)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (244)
                      +.++..    .....+|...+..+.++|-+ +...+++.||...|||+                  ..+.++..+...  
T Consensus       382 l~~g~l----~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi------------------~eg~pik~y~~g--  437 (1113)
T KOG0644|consen  382 LYTGQL----LHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDI------------------WEGIPIKHYFIG--  437 (1113)
T ss_pred             cccchh----hhhhcccccceeeeeecCCCcHhhhhccCCCceEeeec------------------ccCCcceeeecc--
Confidence            666643    45566778899999999955 45668889999999999                  556555554433  


Q ss_pred             CCCCeEEEEEecCCCEEEEeeCCCcEEEEeCC
Q psy11529        209 GGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQ  240 (244)
Q Consensus       209 ~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~  240 (244)
                       ...+..-+||+||..++....-|.+.|....
T Consensus       438 -h~kl~d~kFSqdgts~~lsd~hgql~i~g~g  468 (1113)
T KOG0644|consen  438 -HGKLVDGKFSQDGTSIALSDDHGQLYILGTG  468 (1113)
T ss_pred             -cceeeccccCCCCceEecCCCCCceEEeccC
Confidence             4567788999999988887777888876543

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.72  E-value=1.2e-14  Score=112.97  Aligned_cols=201  Identities=12%  Similarity=0.113  Sum_probs=121.1

Q ss_pred             CCceEEEEEcCCCCe--EE-EecCC--CeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeC-----Ccc
Q psy11529          9 INPVTTHAWNNTRQQ--LA-FTPNN--QEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSA-----DRN   78 (244)
Q Consensus         9 ~~~v~~~~~~~~~~~--l~-~~~~d--~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----d~~   78 (244)
                      ...+..-+|+|||+.  ++ ++..+  ..|++.++.+  ++.+.+..+   .+.....+|+|||+.|+..+.     +..
T Consensus       184 ~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~--g~~~~lt~~---~g~~~~p~wSPDG~~Laf~s~~~g~~di~  258 (428)
T PRK01029        184 HSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLEN--PAGKKILAL---QGNQLMPTFSPRKKLLAFISDRYGNPDLF  258 (428)
T ss_pred             CCCcccceEccCCCceEEEEEEccCCCceEEEEECCC--CCceEeecC---CCCccceEECCCCCEEEEEECCCCCccee
Confidence            455677899999985  32 33333  4677778876  432344333   344556899999998886553     223


Q ss_pred             EEEEeeeCCCCCceeeEEEe-ccCcceEEEEECCCCCeEEEee-CCCeEEEEEeecC--CCceEEEeeecCCCCceeEEE
Q psy11529         79 AYVWTQNNDDKKWKPTLVLL-RINRAATCVKWSPLENKFAAGS-GARLISVCYFESE--NDWWVAKHIKKPIKSTITCLD  154 (244)
Q Consensus        79 i~iwd~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~--~~~~~~~~~~~~~~~~v~~~~  154 (244)
                      +.+|+  +..+.......+. .........+|+|||+.|+..+ .++...+|.+...  ..   ...........+....
T Consensus       259 ~~~~~--~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~---~~~~lt~~~~~~~~p~  333 (428)
T PRK01029        259 IQSFS--LETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQ---SPRLLTKKYRNSSCPA  333 (428)
T ss_pred             EEEee--cccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECccccc---ceEEeccCCCCcccee
Confidence            44466  4432110111122 2223446789999999888765 4666666655432  11   1122222335667899


Q ss_pred             ecCCCCEEEEeeCC---CeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeC-
Q psy11529        155 WHPNNHLLGCGSTD---FKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSH-  230 (244)
Q Consensus       155 ~~p~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-  230 (244)
                      |+|||+.|+..+.+   ..|.+||+                  ..++.. .+...   ...+..+.|+|||+.|+.... 
T Consensus       334 wSPDG~~Laf~~~~~g~~~I~v~dl------------------~~g~~~-~Lt~~---~~~~~~p~wSpDG~~L~f~~~~  391 (428)
T PRK01029        334 WSPDGKKIAFCSVIKGVRQICVYDL------------------ATGRDY-QLTTS---PENKESPSWAIDSLHLVYSAGN  391 (428)
T ss_pred             ECCCCCEEEEEEcCCCCcEEEEEEC------------------CCCCeE-EccCC---CCCccceEECCCCCEEEEEECC
Confidence            99999988876543   36889998                  334332 23222   345678999999998775433 


Q ss_pred             --CCcEEEEeCCC
Q psy11529        231 --DGSINVRMSQQ  241 (244)
Q Consensus       231 --dg~i~vwd~~~  241 (244)
                        ...|.++|+..
T Consensus       392 ~g~~~L~~vdl~~  404 (428)
T PRK01029        392 SNESELYLISLIT  404 (428)
T ss_pred             CCCceEEEEECCC
Confidence              34688888764

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.72  E-value=1.7e-14  Score=113.09  Aligned_cols=195  Identities=11%  Similarity=0.144  Sum_probs=122.2

Q ss_pred             CCCceEEEEEcCCCCeEEEecCC---CeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEE-EeCCc--cEEE
Q psy11529          8 GINPVTTHAWNNTRQQLAFTPNN---QEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVT-CSADR--NAYV   81 (244)
Q Consensus         8 ~~~~v~~~~~~~~~~~l~~~~~d---~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d~--~i~i   81 (244)
                      +...+....|+|||+.|+..+.+   ..|.+|++.+  +..+.   +....+.+....|+|+|+.|+. ...++  .|.+
T Consensus       197 ~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~--g~~~~---l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~  271 (430)
T PRK00178        197 SREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDT--GRREQ---ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYV  271 (430)
T ss_pred             CCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCC--CCEEE---ccCCCCCcCCeEECCCCCEEEEEEccCCCceEEE
Confidence            35678899999999999876543   4689999977  42233   3333444557899999998874 44454  5777


Q ss_pred             EeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeC-CC--eEEEEEeecCCCceEEEeeecCCCCceeEEEecCC
Q psy11529         82 WTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSG-AR--LISVCYFESENDWWVAKHIKKPIKSTITCLDWHPN  158 (244)
Q Consensus        82 wd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~--~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~  158 (244)
                      ||  ..++...   .+..+........|+|+|+.++..+. ++  .|.++++.+++.    ...... ........|+|+
T Consensus       272 ~d--~~~~~~~---~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~----~~lt~~-~~~~~~~~~Spd  341 (430)
T PRK00178        272 MD--LASRQLS---RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRA----ERVTFV-GNYNARPRLSAD  341 (430)
T ss_pred             EE--CCCCCeE---EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCE----EEeecC-CCCccceEECCC
Confidence            78  6776532   22334455667899999998877654 34  455556555542    111111 123346789999


Q ss_pred             CCEEEEeeCC-C--eEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCC-C--
Q psy11529        159 NHLLGCGSTD-F--KVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHD-G--  232 (244)
Q Consensus       159 ~~~l~~~~~d-g--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-g--  232 (244)
                      |+.|+..+.+ +  .|.++|+                  .+++. ..+..    ........|+|||+.|+..+.+ +  
T Consensus       342 g~~i~~~~~~~~~~~l~~~dl------------------~tg~~-~~lt~----~~~~~~p~~spdg~~i~~~~~~~g~~  398 (430)
T PRK00178        342 GKTLVMVHRQDGNFHVAAQDL------------------QRGSV-RILTD----TSLDESPSVAPNGTMLIYATRQQGRG  398 (430)
T ss_pred             CCEEEEEEccCCceEEEEEEC------------------CCCCE-EEccC----CCCCCCceECCCCCEEEEEEecCCce
Confidence            9988877643 3  5778887                  33332 22221    1122356899999988776643 3  


Q ss_pred             cEEEEeCC
Q psy11529        233 SINVRMSQ  240 (244)
Q Consensus       233 ~i~vwd~~  240 (244)
                      .|.++++.
T Consensus       399 ~l~~~~~~  406 (430)
T PRK00178        399 VLMLVSIN  406 (430)
T ss_pred             EEEEEECC
Confidence            46666664

>KOG4227|consensus

Probab=99.71  E-value=6.9e-16  Score=112.26  Aligned_cols=175  Identities=14%  Similarity=0.127  Sum_probs=131.3

Q ss_pred             eeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeC--CCCCceeeEE-EeccCcceEEEEECCCCCeEEEeeCCCe
Q psy11529         48 LDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNN--DDKKWKPTLV-LLRINRAATCVKWSPLENKFAAGSGARL  124 (244)
Q Consensus        48 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~--~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~  124 (244)
                      .+.+.+|.+.|+++.|+.++++|++|+.|..+++|.++.  .....+++.. -..|.+.|.|++|....+.+++|..+++
T Consensus        49 qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~  128 (609)
T KOG4227|consen   49 QKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGT  128 (609)
T ss_pred             hhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcce
Confidence            344678999999999999999999999999999999420  0111112221 1335689999999999999999999999


Q ss_pred             EEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEec
Q psy11529        125 ISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELN  204 (244)
Q Consensus       125 i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (244)
                      |...|+++.+.++..  ......+.|..+..+|..+.|++.+.++.|.+||.+...              ..+.++....
T Consensus       129 VI~HDiEt~qsi~V~--~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~--------------~~~~~~~~AN  192 (609)
T KOG4227|consen  129 VIKHDIETKQSIYVA--NENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQ--------------NPISLVLPAN  192 (609)
T ss_pred             eEeeecccceeeeee--cccCcccceeecccCCCCceEEEEecCceEEEEeccCCC--------------CCCceeeecC
Confidence            999999998752221  222334689999999998999999999999999996332              1233332222


Q ss_pred             CCCCCCCCeEEEEEecC-CCEEEEeeCCCcEEEEeCCCC
Q psy11529        205 NSSSGGGWIHSVAFSKD-GNKLCWTSHDGSINVRMSQQV  242 (244)
Q Consensus       205 ~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~vwd~~~~  242 (244)
                      .    ......+.|+|- -.+|++.+..+-+-+||.+..
T Consensus       193 ~----~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~  227 (609)
T KOG4227|consen  193 S----GKNFYTAEFHPETPALILVNSETGGPNVFDRRMQ  227 (609)
T ss_pred             C----CccceeeeecCCCceeEEeccccCCCCceeeccc
Confidence            2    566788999995 457888888899999999864

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.71  E-value=4.8e-15  Score=115.94  Aligned_cols=174  Identities=16%  Similarity=0.136  Sum_probs=116.0

Q ss_pred             CeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeC---CccEEEEeeeCCCCCceeeEEEeccCcceEEE
Q psy11529         31 QEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSA---DRNAYVWTQNNDDKKWKPTLVLLRINRAATCV  107 (244)
Q Consensus        31 ~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~  107 (244)
                      ..|.+||..+     .....+..+...+.+.+|+|+|+.|+..+.   ...|.+||  +.+++....   ....+....+
T Consensus       184 ~~l~i~D~~g-----~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~d--l~~g~~~~l---~~~~g~~~~~  253 (433)
T PRK04922        184 YALQVADSDG-----YNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQD--LATGQRELV---ASFRGINGAP  253 (433)
T ss_pred             EEEEEECCCC-----CCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEE--CCCCCEEEe---ccCCCCccCc
Confidence            4688898866     344456667788999999999999988764   34699999  677663322   2334455678


Q ss_pred             EECCCCCeEEE-eeCCC--eEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEeeC-CCe--EEEEEeeeccc
Q psy11529        108 KWSPLENKFAA-GSGAR--LISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGST-DFK--VRVFSAYIKDI  181 (244)
Q Consensus       108 ~~~~~~~~l~~-~~~d~--~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~-dg~--i~i~d~~~~~~  181 (244)
                      +|+|+|+.|+. .+.++  .|.+||+.++..     .....+......++|+|||+.|+..+. +|.  |+++|+     
T Consensus       254 ~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~-----~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl-----  323 (433)
T PRK04922        254 SFSPDGRRLALTLSRDGNPEIYVMDLGSRQL-----TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAA-----  323 (433)
T ss_pred             eECCCCCEEEEEEeCCCCceEEEEECCCCCe-----EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEEC-----
Confidence            99999998764 34444  588888877653     222333344567899999998887764 444  555554     


Q ss_pred             ccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCC---cEEEEeCCC
Q psy11529        182 ESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDG---SINVRMSQQ  241 (244)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg---~i~vwd~~~  241 (244)
                                   ..++. ..+..+   ......++|+|||++|+..+.++   .|.+||+.+
T Consensus       324 -------------~~g~~-~~lt~~---g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~  369 (433)
T PRK04922        324 -------------SGGSA-ERLTFQ---GNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLST  369 (433)
T ss_pred             -------------CCCCe-EEeecC---CCCccCEEECCCCCEEEEEECCCCceeEEEEECCC
Confidence                         22222 222222   33445789999999988765433   599999864

>KOG0974|consensus

Probab=99.71  E-value=8.3e-16  Score=123.53  Aligned_cols=197  Identities=15%  Similarity=0.083  Sum_probs=155.6

Q ss_pred             CceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCce-----EEEEeCCCCCeEEEEeCCccEEEEee
Q psy11529         10 NPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKV-----TGIDWAPNTNRIVTCSADRNAYVWTQ   84 (244)
Q Consensus        10 ~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~l~~~~~d~~i~iwd~   84 (244)
                      +.|....+.-+...++.+..++.+.+|+...  +  .....+. +....     .-+-++++.-++++|+.-+.|.+|+.
T Consensus        88 ~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~--~--~~~~~i~-~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~  162 (967)
T KOG0974|consen   88 DWIFGAKLFEENKKIALVTSRNSLLIRDSKN--S--SVLSKIQ-SDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKP  162 (967)
T ss_pred             ccccccchhhhcceEEEEEcCceEEEEeccc--C--ceehhcC-CCceEEEEeEEEEeccCcEEEEEeccccccEEEEec
Confidence            3444444555667888888889999999876  3  3333333 33322     22345667778999999999999994


Q ss_pred             eCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEE
Q psy11529         85 NNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGC  164 (244)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~  164 (244)
                        . ....+. .+.+|.+.+..+.|+-+|+++++.++|.++++|++++.+.   ......+|...+..++|.|.  .+++
T Consensus       163 --~-~dn~p~-~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~---~~~~~fgHsaRvw~~~~~~n--~i~t  233 (967)
T KOG0974|consen  163 --H-EDNKPI-RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREV---LGCTGFGHSARVWACCFLPN--RIIT  233 (967)
T ss_pred             --c-ccCCcc-eecccCCceEEEEEccCCcEEEEEecCcceeeeecccccc---cCcccccccceeEEEEeccc--eeEE
Confidence              3 222222 5679999999999999999999999999999999999876   33466788999999999998  8999


Q ss_pred             eeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCC
Q psy11529        165 GSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQ  241 (244)
Q Consensus       165 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~  241 (244)
                      ++.|-+.++|+.                   .+..+..+..|.  ...+..++..++...++|++.|+.+++|++..
T Consensus       234 ~gedctcrvW~~-------------------~~~~l~~y~~h~--g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~  289 (967)
T KOG0974|consen  234 VGEDCTCRVWGV-------------------NGTQLEVYDEHS--GKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG  289 (967)
T ss_pred             eccceEEEEEec-------------------ccceehhhhhhh--hcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence            999999999975                   466666788875  77899999999999999999999999999864

>KOG1409|consensus

Probab=99.71  E-value=2.2e-15  Score=107.63  Aligned_cols=232  Identities=13%  Similarity=0.163  Sum_probs=165.8

Q ss_pred             EEeCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEee
Q psy11529          5 YSFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQ   84 (244)
Q Consensus         5 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~   84 (244)
                      +.+-..+++++.+.++.+.|++|-..|++.-+.+...-++....+.+..|...|..+-|+.....+++.+.|..+.---.
T Consensus        64 ~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~  143 (404)
T KOG1409|consen   64 YHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCT  143 (404)
T ss_pred             hhhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEee
Confidence            34447899999999999999999999999999876533334556667779999999988887777777776644322110


Q ss_pred             e-------------------------------------CCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEE
Q psy11529         85 N-------------------------------------NDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISV  127 (244)
Q Consensus        85 ~-------------------------------------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i  127 (244)
                      +                                     +............+|...+.++.|.|....|++|..|..+.+
T Consensus       144 e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~  223 (404)
T KOG1409|consen  144 ESGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIM  223 (404)
T ss_pred             ccCCcccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEE
Confidence            0                                     111112233455678899999999999999999999999999


Q ss_pred             EEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCC----------------
Q psy11529        128 CYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWG----------------  191 (244)
Q Consensus       128 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~----------------  191 (244)
                      ||+-..+.   .......|...|..+...+.-+.+.+++.||.|.+|++.....+.+.=...+.                
T Consensus       224 wdigg~~g---~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpffwn~~~m~  300 (404)
T KOG1409|consen  224 WDIGGRKG---TAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFFWNFRQMW  300 (404)
T ss_pred             EeccCCcc---eeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccceeecCccccccchhhhhCchHHHHHHHHH
Confidence            99987765   45566778889999999888889999999999999998533222211000000                


Q ss_pred             ----------------------------c--------------------cccccceeEEecCCCCCCCCeEEEEEecCCC
Q psy11529        192 ----------------------------S--------------------KSTLGNCLVELNNSSSGGGWIHSVAFSKDGN  223 (244)
Q Consensus       192 ----------------------------~--------------------~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  223 (244)
                                                  .                    ...+..+++.+...   ...|+.+.+..+-.
T Consensus       301 ~~k~~glr~h~crkcg~avc~~c~s~~~~~p~mg~e~~vR~~~~c~~~i~~~~~t~LA~phei---~tgItamhlqetlg  377 (404)
T KOG1409|consen  301 DRKQLGLRQHHCRKCGKAVCGKCSSNRSSYPTMGFEFSVRVCDSCYPTIKDEERTPLAIPHEI---KTGITAMHLQETLG  377 (404)
T ss_pred             hhhhhhhhhhhhhhhhhhcCcccccCccccccccceeEEEEecccchhhhcCCCCcccccccc---ccceeEEEhhhhcc
Confidence                                        0                    11111223333222   45688888887778


Q ss_pred             EEEEeeCCCcEEEEeCCCC
Q psy11529        224 KLCWTSHDGSINVRMSQQV  242 (244)
Q Consensus       224 ~l~~~~~dg~i~vwd~~~~  242 (244)
                      +|+|+|.|..|+|||++..
T Consensus       378 lLvTsG~~Rvi~iwd~~~v  396 (404)
T KOG1409|consen  378 LLVTSGTDRVIKIWDVRSV  396 (404)
T ss_pred             ceeecCCceEEEEEechhh
Confidence            9999999999999999864

>KOG4497|consensus

Probab=99.71  E-value=1.9e-16  Score=112.58  Aligned_cols=188  Identities=16%  Similarity=0.228  Sum_probs=125.3

Q ss_pred             CceEEEEEcCCCCeEEEe-cCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEE-EEeCCccEEEEeeeCC
Q psy11529         10 NPVTTHAWNNTRQQLAFT-PNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIV-TCSADRNAYVWTQNND   87 (244)
Q Consensus        10 ~~v~~~~~~~~~~~l~~~-~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~iwd~~~~   87 (244)
                      +.|.-+.|..|.-+++.+ ..++.|.+|++..  .  +-...+.....++.++.|||+|+.++ +...+-+|.+|.  +.
T Consensus        49 dki~yieW~ads~~ilC~~yk~~~vqvwsl~Q--p--ew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWS--L~  122 (447)
T KOG4497|consen   49 DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQ--P--EWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWS--LN  122 (447)
T ss_pred             HHhhheeeeccceeeeeeeeccceEEEEEeec--c--eeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEE--ec
Confidence            455667777776655444 5678999999987  4  44556777788999999999997665 455589999999  55


Q ss_pred             CCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEeeC
Q psy11529         88 DKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGST  167 (244)
Q Consensus        88 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~  167 (244)
                      +.+.   ..++..+..+..++|+|+|++.+.+++-.....+.+...+. |.....+.-..-..+.+.|+|||+.|++   
T Consensus       123 t~~~---~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~-W~ll~~f~~dT~DltgieWsPdg~~laV---  195 (447)
T KOG4497|consen  123 TQKG---YLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKA-WILLKEFKLDTIDLTGIEWSPDGNWLAV---  195 (447)
T ss_pred             ccee---EEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHH-HHHHHhcCCCcccccCceECCCCcEEEE---
Confidence            5542   22233345568999999999998887643222222221111 1122222333456789999999988765   


Q ss_pred             CCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEe
Q psy11529        168 DFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRM  238 (244)
Q Consensus       168 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd  238 (244)
                            ||.                  .-.-.+..+..    +-.+..++|+|.+++|+.|+.|+.++|-+
T Consensus       196 ------wd~------------------~Leykv~aYe~----~lG~k~v~wsP~~qflavGsyD~~lrvln  238 (447)
T KOG4497|consen  196 ------WDN------------------VLEYKVYAYER----GLGLKFVEWSPCNQFLAVGSYDQMLRVLN  238 (447)
T ss_pred             ------ecc------------------hhhheeeeeee----ccceeEEEeccccceEEeeccchhhhhhc
Confidence                  553                  11111112221    56789999999999999999999998854

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.70  E-value=3.2e-14  Score=111.44  Aligned_cols=194  Identities=12%  Similarity=0.136  Sum_probs=116.7

Q ss_pred             CCceEEEEEcCCCCeEEEecCC---CeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEE-EeCCcc--EEEE
Q psy11529          9 INPVTTHAWNNTRQQLAFTPNN---QEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVT-CSADRN--AYVW   82 (244)
Q Consensus         9 ~~~v~~~~~~~~~~~l~~~~~d---~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d~~--i~iw   82 (244)
                      ...+.+..|+|||+.|+..+.+   ..|+++|+.+  ++...+..+   .+.....+|+|||+.|+. .+.++.  |.++
T Consensus       217 ~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~t--g~~~~lt~~---~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~  291 (448)
T PRK04792        217 PEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYT--QVREKVTSF---PGINGAPRFSPDGKKLALVLSKDGQPEIYVV  291 (448)
T ss_pred             CCcccCceECCCCCEEEEEEecCCCcEEEEEECCC--CCeEEecCC---CCCcCCeeECCCCCEEEEEEeCCCCeEEEEE
Confidence            4567789999999999876532   3688888876  422333323   333457899999998865 455665  5566


Q ss_pred             eeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeC-CCeEEEE--EeecCCCceEEEeeecCCCCceeEEEecCCC
Q psy11529         83 TQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSG-ARLISVC--YFESENDWWVAKHIKKPIKSTITCLDWHPNN  159 (244)
Q Consensus        83 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~i~--d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~  159 (244)
                      |  +.+++..   .+..+.......+|+||++.|+..+. ++...+|  |+++++.   .......  ......+|+|||
T Consensus       292 d--l~tg~~~---~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~---~~Lt~~g--~~~~~~~~SpDG  361 (448)
T PRK04792        292 D--IATKALT---RITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKV---SRLTFEG--EQNLGGSITPDG  361 (448)
T ss_pred             E--CCCCCeE---ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE---EEEecCC--CCCcCeeECCCC
Confidence            6  6766532   22334455678899999998877654 4444444  5544432   1111121  233457899999


Q ss_pred             CEEEEeeC-CC--eEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeC-CCc--
Q psy11529        160 HLLGCGST-DF--KVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSH-DGS--  233 (244)
Q Consensus       160 ~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~--  233 (244)
                      ++|+..+. ++  .|.++|+                  ..++. ..+..    ........|+|||+.|+..+. ++.  
T Consensus       362 ~~l~~~~~~~g~~~I~~~dl------------------~~g~~-~~lt~----~~~d~~ps~spdG~~I~~~~~~~g~~~  418 (448)
T PRK04792        362 RSMIMVNRTNGKFNIARQDL------------------ETGAM-QVLTS----TRLDESPSVAPNGTMVIYSTTYQGKQV  418 (448)
T ss_pred             CEEEEEEecCCceEEEEEEC------------------CCCCe-EEccC----CCCCCCceECCCCCEEEEEEecCCceE
Confidence            98877655 34  3445565                  22322 22222    112234579999998776554 343  


Q ss_pred             EEEEeCC
Q psy11529        234 INVRMSQ  240 (244)
Q Consensus       234 i~vwd~~  240 (244)
                      +.+++.+
T Consensus       419 l~~~~~~  425 (448)
T PRK04792        419 LAAVSID  425 (448)
T ss_pred             EEEEECC
Confidence            6666664

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.70  E-value=1.2e-12  Score=99.46  Aligned_cols=214  Identities=12%  Similarity=0.146  Sum_probs=137.0

Q ss_pred             CCceEEEEEcCCCCeEEEecC-CCeEEEeeeccCCCcceee-eeec----------cCCCceEEEEeCCCCCeEEEEeC-
Q psy11529          9 INPVTTHAWNNTRQQLAFTPN-NQEVHLYQYEKAANDWSQL-DVLD----------GHDLKVTGIDWAPNTNRIVTCSA-   75 (244)
Q Consensus         9 ~~~v~~~~~~~~~~~l~~~~~-d~~v~v~~~~~~~~~~~~~-~~~~----------~~~~~v~~~~~~~~~~~l~~~~~-   75 (244)
                      ...-..++++|++++|+++.. +|.|.++++..++ .+... ..+.          .......++.|+|+++++++... 
T Consensus        86 g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g-~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG  164 (345)
T PF10282_consen   86 GSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDG-SLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLG  164 (345)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTS-EEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETT
T ss_pred             CCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCc-ccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecC
Confidence            344457899999999988864 8999999997632 22222 1121          12345788999999998887643 


Q ss_pred             CccEEEEeeeCCCCCceeeEEE-eccCcceEEEEECCCCCeEEEeeC-CCeEEEEEeecCCCceEEEeeec----CC--C
Q psy11529         76 DRNAYVWTQNNDDKKWKPTLVL-LRINRAATCVKWSPLENKFAAGSG-ARLISVCYFESENDWWVAKHIKK----PI--K  147 (244)
Q Consensus        76 d~~i~iwd~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~i~d~~~~~~~~~~~~~~~----~~--~  147 (244)
                      ...|.+|+++...+++...... .......+.++|+|+++++++..+ ++.|.++++..............    ..  .
T Consensus       165 ~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~  244 (345)
T PF10282_consen  165 ADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGE  244 (345)
T ss_dssp             TTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSS
T ss_pred             CCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeecccccccc
Confidence            4589999943233233332222 234566899999999998777655 88899999994332111111111    11  1


Q ss_pred             CceeEEEecCCCCEEEEee-CCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEE
Q psy11529        148 STITCLDWHPNNHLLGCGS-TDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLC  226 (244)
Q Consensus       148 ~~v~~~~~~p~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  226 (244)
                      .....+.++|||++|+++. ..+.|.+|++....              ...+.+..+...   ....+.++++|+|++|+
T Consensus       245 ~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~--------------g~l~~~~~~~~~---G~~Pr~~~~s~~g~~l~  307 (345)
T PF10282_consen  245 NAPAEIAISPDGRFLYVSNRGSNSISVFDLDPAT--------------GTLTLVQTVPTG---GKFPRHFAFSPDGRYLY  307 (345)
T ss_dssp             SSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTT--------------TTEEEEEEEEES---SSSEEEEEE-TTSSEEE
T ss_pred             CCceeEEEecCCCEEEEEeccCCEEEEEEEecCC--------------CceEEEEEEeCC---CCCccEEEEeCCCCEEE
Confidence            2678899999999887765 46789999983211              112334444443   55689999999999988


Q ss_pred             Eee-CCCcEEEEeCC
Q psy11529        227 WTS-HDGSINVRMSQ  240 (244)
Q Consensus       227 ~~~-~dg~i~vwd~~  240 (244)
                      ++. .++.|.+|+++
T Consensus       308 Va~~~s~~v~vf~~d  322 (345)
T PF10282_consen  308 VANQDSNTVSVFDID  322 (345)
T ss_dssp             EEETTTTEEEEEEEE
T ss_pred             EEecCCCeEEEEEEe
Confidence            776 56789999874

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG1963|consensus

Probab=99.69  E-value=1.1e-14  Score=115.33  Aligned_cols=209  Identities=14%  Similarity=0.185  Sum_probs=148.2

Q ss_pred             EEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceee---eeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCC-C
Q psy11529         13 TTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQL---DVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNND-D   88 (244)
Q Consensus        13 ~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-~   88 (244)
                      .++.+++.|...+... +..+.+|....  .. +..   ..-..|...+++.++||++++++++..||+|.+|.- .. .
T Consensus       164 ~~I~~~~~ge~~~i~~-~~~~~~~~v~~--~~-~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d-~~~~  238 (792)
T KOG1963|consen  164 KSIVDNNSGEFKGIVH-MCKIHIYFVPK--HT-KHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRD-FGSS  238 (792)
T ss_pred             ccEEEcCCceEEEEEE-eeeEEEEEecc--cc-eeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEec-cccc
Confidence            4677788787766665 45688888865  21 111   111236777899999999999999999999999972 22 1


Q ss_pred             CCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEeeCC
Q psy11529         89 KKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTD  168 (244)
Q Consensus        89 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d  168 (244)
                      +.......+.=|...|.+++|+++|.+|++|+..+.+.+|.+.++++     +......+.|..+.++||+.+.+....|
T Consensus       239 ~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~k-----qfLPRLgs~I~~i~vS~ds~~~sl~~~D  313 (792)
T KOG1963|consen  239 DDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKK-----QFLPRLGSPILHIVVSPDSDLYSLVLED  313 (792)
T ss_pred             cccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCCc-----ccccccCCeeEEEEEcCCCCeEEEEecC
Confidence            22222233445788999999999999999999999999999999875     4444556899999999999999999999


Q ss_pred             CeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCC
Q psy11529        169 FKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQ  241 (244)
Q Consensus       169 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~  241 (244)
                      ..|.+...........-.....    .+...   -...   .+-.+.++++|.-+.++-.+..|.|.+||+-+
T Consensus       314 NqI~li~~~dl~~k~tIsgi~~----~~~~~---k~~~---~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~t  376 (792)
T KOG1963|consen  314 NQIHLIKASDLEIKSTISGIKP----PTPST---KTRP---QSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYT  376 (792)
T ss_pred             ceEEEEeccchhhhhhccCccC----CCccc---cccc---cccceeEEEcCCCCceeecCCCceEEEEeccc
Confidence            9999988743322211000000    00000   0001   44567888999777788888999999999865

>KOG1272|consensus

Probab=99.69  E-value=4.9e-17  Score=120.11  Aligned_cols=191  Identities=14%  Similarity=0.134  Sum_probs=152.2

Q ss_pred             CCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCCC
Q psy11529          9 INPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDD   88 (244)
Q Consensus         9 ~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~   88 (244)
                      ...|.++.|-.+.++||++- .+.++|||-.+     ..++.++.| ..|..+.|-|..-+|++++..|.++--|  +.+
T Consensus       170 ~Etv~Dv~~LHneq~~AVAQ-K~y~yvYD~~G-----tElHClk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~D--VS~  240 (545)
T KOG1272|consen  170 METVRDVTFLHNEQFFAVAQ-KKYVYVYDNNG-----TELHCLKRH-IRVARLEFLPYHFLLVAASEAGFLKYQD--VST  240 (545)
T ss_pred             hhhhhhhhhhcchHHHHhhh-hceEEEecCCC-----cEEeehhhc-CchhhhcccchhheeeecccCCceEEEe--ech
Confidence            57788899988888888874 57899999887     677777754 5688999999888899999999999999  788


Q ss_pred             CCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEeeCC
Q psy11529         89 KKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTD  168 (244)
Q Consensus        89 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d  168 (244)
                      |+.+..+.  ...+.+..+.-+|-...+-+|...|+|.+|......+    ......|.++|.++++.++|+|++|.+.|
T Consensus       241 GklVa~~~--t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skeP----LvKiLcH~g~V~siAv~~~G~YMaTtG~D  314 (545)
T KOG1272|consen  241 GKLVASIR--TGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEP----LVKILCHRGPVSSIAVDRGGRYMATTGLD  314 (545)
T ss_pred             hhhhHHHH--ccCCccchhhcCCccceEEEcCCCceEEecCCCCcch----HHHHHhcCCCcceEEECCCCcEEeecccc
Confidence            88655543  3456777888899888999999999999999888765    45567789999999999999999999999


Q ss_pred             CeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEe
Q psy11529        169 FKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRM  238 (244)
Q Consensus       169 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd  238 (244)
                      ..++|||+|                  ....+.++..    ..+...+++|..|  +++.+....|.||.
T Consensus       315 r~~kIWDlR------------------~~~ql~t~~t----p~~a~~ls~Sqkg--lLA~~~G~~v~iw~  360 (545)
T KOG1272|consen  315 RKVKIWDLR------------------NFYQLHTYRT----PHPASNLSLSQKG--LLALSYGDHVQIWK  360 (545)
T ss_pred             cceeEeeec------------------cccccceeec----CCCcccccccccc--ceeeecCCeeeeeh
Confidence            999999995                  3333444433    3467788888666  33344455788883

>KOG0649|consensus

Probab=99.69  E-value=3.3e-14  Score=97.31  Aligned_cols=190  Identities=11%  Similarity=0.151  Sum_probs=135.7

Q ss_pred             CceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCCCC
Q psy11529         10 NPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDK   89 (244)
Q Consensus        10 ~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~   89 (244)
                      -.|+++...|..+.+++++.|+.++-||+++  +  +..+++++|+..|.++.--.....+++|+.||++++||  .+++
T Consensus       115 PeINam~ldP~enSi~~AgGD~~~y~~dlE~--G--~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd--~kt~  188 (325)
T KOG0649|consen  115 PEINAMWLDPSENSILFAGGDGVIYQVDLED--G--RIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWD--TKTQ  188 (325)
T ss_pred             CccceeEeccCCCcEEEecCCeEEEEEEecC--C--EEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEe--cccc
Confidence            4688999999777777777899999999998  6  77889999999999998855556788999999999999  7888


Q ss_pred             CceeeEEEeccC--------cceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCE
Q psy11529         90 KWKPTLVLLRIN--------RAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHL  161 (244)
Q Consensus        90 ~~~~~~~~~~~~--------~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~  161 (244)
                      +....+....++        ..|-+++-+  ..+|++|+ ...+.+|.++..+.     ....+....+..+.|..|  .
T Consensus       189 k~v~~ie~yk~~~~lRp~~g~wigala~~--edWlvCGg-Gp~lslwhLrsse~-----t~vfpipa~v~~v~F~~d--~  258 (325)
T KOG0649|consen  189 KHVSMIEPYKNPNLLRPDWGKWIGALAVN--EDWLVCGG-GPKLSLWHLRSSES-----TCVFPIPARVHLVDFVDD--C  258 (325)
T ss_pred             ceeEEeccccChhhcCcccCceeEEEecc--CceEEecC-CCceeEEeccCCCc-----eEEEecccceeEeeeecc--e
Confidence            766665544332        234455554  45777665 45699999999876     333445578888888755  6


Q ss_pred             EEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCC-CEEEEeeCCCcEEEE
Q psy11529        162 LGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDG-NKLCWTSHDGSINVR  237 (244)
Q Consensus       162 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~vw  237 (244)
                      ++++++...+.-|.+                   .+..-...+..   ....++..|+..- ++|-.++....+.|+
T Consensus       259 vl~~G~g~~v~~~~l-------------------~Gvl~a~ip~~---s~~c~s~s~~~~p~k~~s~ag~s~~~~i~  313 (325)
T KOG0649|consen  259 VLIGGEGNHVQSYTL-------------------NGVLQANIPVE---STACYSASWQTSPIKFISIAGFSNKLHIL  313 (325)
T ss_pred             EEEeccccceeeeee-------------------ccEEEEeccCC---ccceeeecccCCceEEEEecccceeeeee
Confidence            777787788999987                   34444444443   3445555554432 345555666666664

>KOG4547|consensus

Probab=99.69  E-value=2e-14  Score=109.28  Aligned_cols=189  Identities=12%  Similarity=0.147  Sum_probs=148.4

Q ss_pred             CCCCeEEEecCCCeEEEeeeccCCCcceeeeeec---cCCCceEEEEeC------C--------------CCCeEEEEeC
Q psy11529         19 NTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLD---GHDLKVTGIDWA------P--------------NTNRIVTCSA   75 (244)
Q Consensus        19 ~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~------~--------------~~~~l~~~~~   75 (244)
                      |-..++|....||.+++|+...  +  +....+.   .-.+...+..|.      |              +-..++-|..
T Consensus         3 ~~~~~~A~~~~~g~l~iw~t~~--~--~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~   78 (541)
T KOG4547|consen    3 PALDYFALSTGDGRLRIWDTAK--N--QLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTP   78 (541)
T ss_pred             chhheEeecCCCCeEEEEEccC--c--eeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecC
Confidence            4567899999999999999876  4  3333332   123344444442      1              2235677788


Q ss_pred             CccEEEEeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEe
Q psy11529         76 DRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDW  155 (244)
Q Consensus        76 d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~  155 (244)
                      .|.|.+|+  ...++....+....|.+.|.++.++.+-..|.+++.|..+..|+......    ..........+.+++.
T Consensus        79 ~g~v~~ys--~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~----~~~~~~~~~~~~sl~i  152 (541)
T KOG4547|consen   79 QGSVLLYS--VAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVI----IRIWKEQKPLVSSLCI  152 (541)
T ss_pred             CccEEEEE--ecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEeccccee----eeeeccCCCccceEEE
Confidence            89999999  77888777777678999999999999999999999999999999888764    4555666678999999


Q ss_pred             cCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecC-----CCEEEEee-
Q psy11529        156 HPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKD-----GNKLCWTS-  229 (244)
Q Consensus       156 ~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-----~~~l~~~~-  229 (244)
                      +|||..+++++  ++|++||+                  .+.+.+..|.+|   .++|++++|--+     |.+++++. 
T Consensus       153 s~D~~~l~~as--~~ik~~~~------------------~~kevv~~ftgh---~s~v~t~~f~~~~~g~~G~~vLssa~  209 (541)
T KOG4547|consen  153 SPDGKILLTAS--RQIKVLDI------------------ETKEVVITFTGH---GSPVRTLSFTTLIDGIIGKYVLSSAA  209 (541)
T ss_pred             cCCCCEEEecc--ceEEEEEc------------------cCceEEEEecCC---CcceEEEEEEEeccccccceeeeccc
Confidence            99999999886  78999999                  789999999999   999999999887     67766553 


Q ss_pred             CCCcEEEEeCC
Q psy11529        230 HDGSINVRMSQ  240 (244)
Q Consensus       230 ~dg~i~vwd~~  240 (244)
                      .+.-+.+|-++
T Consensus       210 ~~r~i~~w~v~  220 (541)
T KOG4547|consen  210 AERGITVWVVE  220 (541)
T ss_pred             cccceeEEEEE
Confidence            45567777654

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.68  E-value=5.4e-14  Score=110.01  Aligned_cols=174  Identities=17%  Similarity=0.247  Sum_probs=116.6

Q ss_pred             CeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCC---ccEEEEeeeCCCCCceeeEEEeccCcceEEE
Q psy11529         31 QEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSAD---RNAYVWTQNNDDKKWKPTLVLLRINRAATCV  107 (244)
Q Consensus        31 ~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~  107 (244)
                      ..|.++|..+     .....+..+...+...+|+|+|++|+.+..+   ..|++||  +.+++...   +......+.++
T Consensus       170 ~~l~~~d~~g-----~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d--~~~g~~~~---~~~~~~~~~~~  239 (417)
T TIGR02800       170 YELQVADYDG-----ANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQD--LATGQREK---VASFPGMNGAP  239 (417)
T ss_pred             ceEEEEcCCC-----CCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEE--CCCCCEEE---eecCCCCccce
Confidence            3577777765     3334455567778999999999999877643   4799999  67765322   23345566779


Q ss_pred             EECCCCCeEEEe-eCCC--eEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEeeC-CC--eEEEEEeeeccc
Q psy11529        108 KWSPLENKFAAG-SGAR--LISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGST-DF--KVRVFSAYIKDI  181 (244)
Q Consensus       108 ~~~~~~~~l~~~-~~d~--~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~-dg--~i~i~d~~~~~~  181 (244)
                      +|+|+++.|+.. +.++  .|.+|++.++..     .....+........|+|||+.|+..+. .+  .|+++|+     
T Consensus       240 ~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~-----~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~-----  309 (417)
T TIGR02800       240 AFSPDGSKLAVSLSKDGNPDIYVMDLDGKQL-----TRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDA-----  309 (417)
T ss_pred             EECCCCCEEEEEECCCCCccEEEEECCCCCE-----EECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEEC-----
Confidence            999999887654 4444  477777766542     222223344557789999998876654 33  5666665     


Q ss_pred             ccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCC---cEEEEeCCC
Q psy11529        182 ESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDG---SINVRMSQQ  241 (244)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg---~i~vwd~~~  241 (244)
                                   ..++ ...+..+   ......+.|+|+|++|+.++.++   .|.+||+.+
T Consensus       310 -------------~~~~-~~~l~~~---~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~  355 (417)
T TIGR02800       310 -------------DGGE-VRRLTFR---GGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDG  355 (417)
T ss_pred             -------------CCCC-EEEeecC---CCCccCeEECCCCCEEEEEEccCCceEEEEEeCCC
Confidence                         2222 2233333   55667889999999998887765   788888764

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.67  E-value=5.3e-13  Score=101.51  Aligned_cols=216  Identities=10%  Similarity=0.095  Sum_probs=133.1

Q ss_pred             EEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEe-CCccEEEEeeeCCCCCc
Q psy11529         13 TTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCS-ADRNAYVWTQNNDDKKW   91 (244)
Q Consensus        13 ~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~   91 (244)
                      ..+.|+|||+++++++.||.|.++|+.+  .  +.+.+++. .....++++++||++++++. .++.+.++|  .++.+.
T Consensus        40 ~~~~~s~Dgr~~yv~~rdg~vsviD~~~--~--~~v~~i~~-G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D--~~tle~  112 (369)
T PF02239_consen   40 AGLKFSPDGRYLYVANRDGTVSVIDLAT--G--KVVATIKV-GGNPRGIAVSPDGKYVYVANYEPGTVSVID--AETLEP  112 (369)
T ss_dssp             EEEE-TT-SSEEEEEETTSEEEEEETTS--S--SEEEEEE--SSEEEEEEE--TTTEEEEEEEETTEEEEEE--TTT--E
T ss_pred             eEEEecCCCCEEEEEcCCCeEEEEECCc--c--cEEEEEec-CCCcceEEEcCCCCEEEEEecCCCceeEec--cccccc
Confidence            4578999999999999999999999987  4  67777774 44567899999999998775 489999999  777765


Q ss_pred             eeeEEEec-----cCcceEEEEECCCCCeEEEeeC-CCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEe
Q psy11529         92 KPTLVLLR-----INRAATCVKWSPLENKFAAGSG-ARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCG  165 (244)
Q Consensus        92 ~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~  165 (244)
                      ........     ....+..+..+|....+++.-. .+.|.+.|+...+.   ................|+|++++++++
T Consensus       113 v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~---~~~~~i~~g~~~~D~~~dpdgry~~va  189 (369)
T PF02239_consen  113 VKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKN---LKVTTIKVGRFPHDGGFDPDGRYFLVA  189 (369)
T ss_dssp             EEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSC---EEEEEEE--TTEEEEEE-TTSSEEEEE
T ss_pred             eeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccc---cceeeecccccccccccCcccceeeec
Confidence            54443322     2346778888888776655544 57777777666544   222222234567789999999987664


Q ss_pred             -eCCCeEEEEEeeecccccC------C---------CCCC---CC-------------------ccccccceeEEecCCC
Q psy11529        166 -STDFKVRVFSAYIKDIESA------P---------QSTN---WG-------------------SKSTLGNCLVELNNSS  207 (244)
Q Consensus       166 -~~dg~i~i~d~~~~~~~~~------~---------~~~~---~~-------------------~~~~~~~~~~~~~~~~  207 (244)
                       ..+..|-++|.........      +         .+..   |.                   ......+.+.++... 
T Consensus       190 ~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~-  268 (369)
T PF02239_consen  190 ANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQ-  268 (369)
T ss_dssp             EGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-S-
T ss_pred             ccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECC-
Confidence             4466788888753322110      0         0000   10                   133456677777765 


Q ss_pred             CCCCCeEEEEEecCCCEEEEe----eCCCcEEEEeCCCC
Q psy11529        208 SGGGWIHSVAFSKDGNKLCWT----SHDGSINVRMSQQV  242 (244)
Q Consensus       208 ~~~~~v~~~~~s~~~~~l~~~----~~dg~i~vwd~~~~  242 (244)
                        ..+ .-+..+|+++++.+.    ...++|.++|.+++
T Consensus       269 --G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl  304 (369)
T PF02239_consen  269 --GGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTL  304 (369)
T ss_dssp             --SSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGT
T ss_pred             --CCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCc
Confidence              555 778889999999887    44589999999876

...

>KOG4497|consensus

Probab=99.66  E-value=3.7e-14  Score=101.10  Aligned_cols=200  Identities=13%  Similarity=0.116  Sum_probs=134.6

Q ss_pred             CCceEEEEEcCCCCeEE-EecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeC-C----------
Q psy11529          9 INPVTTHAWNNTRQQLA-FTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSA-D----------   76 (244)
Q Consensus         9 ~~~v~~~~~~~~~~~l~-~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d----------   76 (244)
                      ..++.++.|||||+.|+ +...+-.|.||.+.+     +....+.-.+..+..++|+|+|++.+.++. |          
T Consensus        91 ~agls~~~WSPdgrhiL~tseF~lriTVWSL~t-----~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c  165 (447)
T KOG4497|consen   91 QAGLSSISWSPDGRHILLTSEFDLRITVWSLNT-----QKGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSC  165 (447)
T ss_pred             CCcceeeeECCCcceEeeeecceeEEEEEEecc-----ceeEEecccccCceeEEECCCCceeeeeecccHHHHHHHHhh
Confidence            67899999999997655 555688999999988     444455544566789999999998887653 1          


Q ss_pred             -------------------------ccEEEEeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEee
Q psy11529         77 -------------------------RNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFE  131 (244)
Q Consensus        77 -------------------------~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~  131 (244)
                                               +.+.+||-   --+  .......-.-.+..++|+|.+++|++|+.|+.+++.+--
T Consensus       166 ~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~---~Le--ykv~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~  240 (447)
T KOG4497|consen  166 KAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDN---VLE--YKVYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHF  240 (447)
T ss_pred             HHHHHHHhcCCCcccccCceECCCCcEEEEecc---hhh--heeeeeeeccceeEEEeccccceEEeeccchhhhhhcee
Confidence                                     23445551   111  111122234568889999999999999999988875521


Q ss_pred             cCCC--------------------------------------------------------ceEEEeeec------CCCCc
Q psy11529        132 SEND--------------------------------------------------------WWVAKHIKK------PIKST  149 (244)
Q Consensus       132 ~~~~--------------------------------------------------------~~~~~~~~~------~~~~~  149 (244)
                      +-+.                                                        ........+      .....
T Consensus       241 tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g  320 (447)
T KOG4497|consen  241 TWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCG  320 (447)
T ss_pred             eeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccc
Confidence            1000                                                        000001111      01245


Q ss_pred             eeEEEecCCCCEEEEeeCC--CeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEE
Q psy11529        150 ITCLDWHPNNHLLGCGSTD--FKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCW  227 (244)
Q Consensus       150 v~~~~~~p~~~~l~~~~~d--g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~  227 (244)
                      +.-++|++|..+++|-.+.  ..+-+||++                  ..+....+..    ..+|+...|+|....|+.
T Consensus       321 ~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq------------------~l~l~avLiQ----k~piraf~WdP~~prL~v  378 (447)
T KOG4497|consen  321 AGKLAFSCDSTYAATRNDKYPNALWLWDLQ------------------NLKLHAVLIQ----KHPIRAFEWDPGRPRLVV  378 (447)
T ss_pred             cceeeecCCceEEeeecCCCCceEEEEech------------------hhhhhhhhhh----ccceeEEEeCCCCceEEE
Confidence            6779999999999986543  579999993                  3333333333    778999999998888887


Q ss_pred             eeCCCcEEEEeCC
Q psy11529        228 TSHDGSINVRMSQ  240 (244)
Q Consensus       228 ~~~dg~i~vwd~~  240 (244)
                      +.....+++|...
T Consensus       379 ctg~srLY~W~ps  391 (447)
T KOG4497|consen  379 CTGKSRLYFWAPS  391 (447)
T ss_pred             EcCCceEEEEcCC
Confidence            7777789999764

>KOG2321|consensus

Probab=99.65  E-value=2.6e-14  Score=108.67  Aligned_cols=199  Identities=11%  Similarity=0.142  Sum_probs=150.2

Q ss_pred             EEEEEcC-CCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCCCCCc
Q psy11529         13 TTHAWNN-TRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKW   91 (244)
Q Consensus        13 ~~~~~~~-~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~   91 (244)
                      .+++++. ...+++.| ....|+-++++.  +  .-+..+....+.++++..++...+|++|+.+|.|..||  .+....
T Consensus       137 RDm~y~~~scDly~~g-sg~evYRlNLEq--G--rfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwD--pR~ksr  209 (703)
T KOG2321|consen  137 RDMKYHKPSCDLYLVG-SGSEVYRLNLEQ--G--RFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWD--PRDKSR  209 (703)
T ss_pred             ccccccCCCccEEEee-cCcceEEEEccc--c--ccccccccccccceeeeecCccceEEecccCceEEEec--chhhhh
Confidence            3455543 33344444 456788888887  6  55566666678999999999888999999999999999  666544


Q ss_pred             eeeEEEe----ccC-----cceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCC--C
Q psy11529         92 KPTLVLL----RIN-----RAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNN--H  160 (244)
Q Consensus        92 ~~~~~~~----~~~-----~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~--~  160 (244)
                      ...+...    .++     ..|+++.|+.+|-.+++|+.+|.+.|||+++.++   .........-+|..+.|.+.+  +
T Consensus       210 v~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~p---l~~kdh~~e~pi~~l~~~~~~~q~  286 (703)
T KOG2321|consen  210 VGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKP---LLVKDHGYELPIKKLDWQDTDQQN  286 (703)
T ss_pred             heeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCc---eeecccCCccceeeecccccCCCc
Confidence            3333221    122     3499999999999999999999999999999987   333334445789999998853  4


Q ss_pred             EEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCC
Q psy11529        161 LLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQ  240 (244)
Q Consensus       161 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~  240 (244)
                      .+++ .+...++|||-                  .+++....+..    ...+..+++-|++.+++++-.++.+..|=+.
T Consensus       287 ~v~S-~Dk~~~kiWd~------------------~~Gk~~asiEp----t~~lND~C~~p~sGm~f~Ane~~~m~~yyiP  343 (703)
T KOG2321|consen  287 KVVS-MDKRILKIWDE------------------CTGKPMASIEP----TSDLNDFCFVPGSGMFFTANESSKMHTYYIP  343 (703)
T ss_pred             eEEe-cchHHhhhccc------------------ccCCceeeccc----cCCcCceeeecCCceEEEecCCCcceeEEcc
Confidence            5554 35668999998                  67888888876    6679999999999999999999888888777


Q ss_pred             CCCC
Q psy11529        241 QVLP  244 (244)
Q Consensus       241 ~~~p  244 (244)
                      .+-|
T Consensus       344 ~LGP  347 (703)
T KOG2321|consen  344 SLGP  347 (703)
T ss_pred             ccCC
Confidence            6644

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.65  E-value=6.2e-12  Score=95.62  Aligned_cols=219  Identities=17%  Similarity=0.108  Sum_probs=140.7

Q ss_pred             CceEEEEEcCCCCeEEEecC----CCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeC-CccEEEEee
Q psy11529         10 NPVTTHAWNNTRQQLAFTPN----NQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSA-DRNAYVWTQ   84 (244)
Q Consensus        10 ~~v~~~~~~~~~~~l~~~~~----d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~iwd~   84 (244)
                      .....++++|++++|.+...    ++.|..|.+....+.+..+............++++|++++|+++.. +|.+.++++
T Consensus        37 ~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l  116 (345)
T PF10282_consen   37 ENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPL  116 (345)
T ss_dssp             SSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             CCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEc
Confidence            44556889999998888755    5799999987642344555555534555678999999999998875 899999995


Q ss_pred             eCCCCCceeeEEEec-----------cCcceEEEEECCCCCeEEEeeC-CCeEEEEEeecCCC-ceEEEeeecCCCCcee
Q psy11529         85 NNDDKKWKPTLVLLR-----------INRAATCVKWSPLENKFAAGSG-ARLISVCYFESEND-WWVAKHIKKPIKSTIT  151 (244)
Q Consensus        85 ~~~~~~~~~~~~~~~-----------~~~~v~~~~~~~~~~~l~~~~~-d~~i~i~d~~~~~~-~~~~~~~~~~~~~~v~  151 (244)
                      + ..+..........           ......++.|+|+++++++... ...|.+|+++.... +........+......
T Consensus       117 ~-~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPR  195 (345)
T PF10282_consen  117 D-DDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPR  195 (345)
T ss_dssp             C-TTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEE
T ss_pred             c-CCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCc
Confidence            2 2344333322221           2345789999999998887654 56799999988763 1222233445567889


Q ss_pred             EEEecCCCCEEEEee-CCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEee-
Q psy11529        152 CLDWHPNNHLLGCGS-TDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTS-  229 (244)
Q Consensus       152 ~~~~~p~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-  229 (244)
                      .+.|+|+++++++.. .+++|.++++.......           ...+.+..+............++++|||++|+++. 
T Consensus       196 h~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~-----------~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr  264 (345)
T PF10282_consen  196 HLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSL-----------TEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNR  264 (345)
T ss_dssp             EEEE-TTSSEEEEEETTTTEEEEEEEETTTTEE-----------EEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEEC
T ss_pred             EEEEcCCcCEEEEecCCCCcEEEEeecccCCce-----------eEEEEeeeccccccccCCceeEEEecCCCEEEEEec
Confidence            999999999876665 47789999985111000           00111111211100023678999999999887765 


Q ss_pred             CCCcEEEEeCC
Q psy11529        230 HDGSINVRMSQ  240 (244)
Q Consensus       230 ~dg~i~vwd~~  240 (244)
                      .+++|.+|+++
T Consensus       265 ~~~sI~vf~~d  275 (345)
T PF10282_consen  265 GSNSISVFDLD  275 (345)
T ss_dssp             TTTEEEEEEEC
T ss_pred             cCCEEEEEEEe
Confidence            56789999984

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG1334|consensus

Probab=99.64  E-value=7.3e-15  Score=109.45  Aligned_cols=218  Identities=17%  Similarity=0.141  Sum_probs=163.6

Q ss_pred             EEeCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCC--CCCeEEEEeCCccEEEE
Q psy11529          5 YSFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAP--NTNRIVTCSADRNAYVW   82 (244)
Q Consensus         5 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~iw   82 (244)
                      ..-|.+-|..+.|+..|..|++|+.|..|.+||...  +. ..+.-..+|...|....|-|  +.+-+++++.||.+++=
T Consensus       138 L~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~--~~-~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s  214 (559)
T KOG1334|consen  138 LNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVS--GS-PKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVS  214 (559)
T ss_pred             ccCCCCccceeeecccCceeeccCccceEEeehhhc--cC-cccccccccccchhhhhccCCCCCcCceeccccCceeee
Confidence            344689999999999999999999999999999866  21 33444567888898889988  45678999999999998


Q ss_pred             eeeCCCCCceeeEEEeccCcceEEEEECCCC-CeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCC---ceeEEEecCC
Q psy11529         83 TQNNDDKKWKPTLVLLRINRAATCVKWSPLE-NKFAAGSGARLISVCYFESENDWWVAKHIKKPIKS---TITCLDWHPN  158 (244)
Q Consensus        83 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~---~v~~~~~~p~  158 (244)
                      .+ ..++.......+..|.+.+..++.-|+. ..|.+++.|+.+.-+|++......... .......   ....++.+|.
T Consensus       215 ~i-~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~-cr~~~~~~~v~L~~Ia~~P~  292 (559)
T KOG1334|consen  215 EI-LETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFV-CREADEKERVGLYTIAVDPR  292 (559)
T ss_pred             ee-ccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceee-eeccCCccceeeeeEecCCC
Confidence            86 5666666566677899999999999974 559999999999999998876532222 2222222   6788999996


Q ss_pred             CC-EEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCC---CCCCCeEEEEEecCCCEEEEeeCCCcE
Q psy11529        159 NH-LLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSS---SGGGWIHSVAFSKDGNKLCWTSHDGSI  234 (244)
Q Consensus       159 ~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~s~~~~~l~~~~~dg~i  234 (244)
                      .. .+++++.|..+++||.+..+.....            ..+..+..||   .....|++++|+.++.-|+++-.|-.|
T Consensus       293 nt~~faVgG~dqf~RvYD~R~~~~e~~n------------~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~I  360 (559)
T KOG1334|consen  293 NTNEFAVGGSDQFARVYDQRRIDKEENN------------GVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDI  360 (559)
T ss_pred             CccccccCChhhhhhhhcccchhhcccc------------chhhhcCCccccccCcccceeEEecCCccceeeeecccce
Confidence            64 8999999999999999755443211            1222222221   014579999999888777777788889


Q ss_pred             EEEeC
Q psy11529        235 NVRMS  239 (244)
Q Consensus       235 ~vwd~  239 (244)
                      +++.-
T Consensus       361 YLF~~  365 (559)
T KOG1334|consen  361 YLFNK  365 (559)
T ss_pred             EEecc
Confidence            99843

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.63  E-value=3.8e-12  Score=92.08  Aligned_cols=219  Identities=13%  Similarity=0.088  Sum_probs=145.5

Q ss_pred             CCceEEEEEcCCCCeEEEec---CCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeC-CccEEEEee
Q psy11529          9 INPVTTHAWNNTRQQLAFTP---NNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSA-DRNAYVWTQ   84 (244)
Q Consensus         9 ~~~v~~~~~~~~~~~l~~~~---~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~iwd~   84 (244)
                      .+..+-++|+|+++.|.++.   .+|.|..|.++...+.+..+........+-+.+++++++++++++.. .|.|.++-+
T Consensus        39 ~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~  118 (346)
T COG2706          39 LGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPL  118 (346)
T ss_pred             cCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEEEc
Confidence            46678899999999888774   35789999887633433343333333344488999999999998876 689999995


Q ss_pred             eCCCCCceeeEEEeccCcc----------eEEEEECCCCCeEEEeeC-CCeEEEEEeecCCCceEEEeeecCCCCceeEE
Q psy11529         85 NNDDKKWKPTLVLLRINRA----------ATCVKWSPLENKFAAGSG-ARLISVCYFESENDWWVAKHIKKPIKSTITCL  153 (244)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~----------v~~~~~~~~~~~l~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~  153 (244)
                       ...|..........|.+.          +....+.|++++|++.+- ...|.+|+++.+.... ............+.|
T Consensus       119 -~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~-~~~~~v~~G~GPRHi  196 (346)
T COG2706         119 -QADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTP-ADPAEVKPGAGPRHI  196 (346)
T ss_pred             -ccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCcccc-ccccccCCCCCcceE
Confidence             234655444444445444          888999999999888764 4568999999665411 112222345678999


Q ss_pred             EecCCCCEEEEeeC-CCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeC-C
Q psy11529        154 DWHPNNHLLGCGST-DFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSH-D  231 (244)
Q Consensus       154 ~~~p~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-d  231 (244)
                      .|+|++++.++.++ +++|-+|.......+.           ..-+.+..++..-........+..+|||++|+++.. .
T Consensus       197 ~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~-----------~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~  265 (346)
T COG2706         197 VFHPNGKYAYLVNELNSTVDVLEYNPAVGKF-----------EELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGH  265 (346)
T ss_pred             EEcCCCcEEEEEeccCCEEEEEEEcCCCceE-----------EEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCC
Confidence            99999998877665 8999999985321000           011122222211111567788999999999987753 3


Q ss_pred             CcEEEEeCC
Q psy11529        232 GSINVRMSQ  240 (244)
Q Consensus       232 g~i~vwd~~  240 (244)
                      ..|.++.+.
T Consensus       266 dsI~~f~V~  274 (346)
T COG2706         266 DSIAVFSVD  274 (346)
T ss_pred             CeEEEEEEc
Confidence            367776654

>KOG1240|consensus

Probab=99.62  E-value=7.8e-14  Score=114.41  Aligned_cols=181  Identities=14%  Similarity=0.120  Sum_probs=128.4

Q ss_pred             eeeccCCCcceeeeeeccCCCceEEEEeCCC-CCeEEEEeCCccEEEEeeeCCC---CCceeeEEEeccCcceEEEEECC
Q psy11529         36 YQYEKAANDWSQLDVLDGHDLKVTGIDWAPN-TNRIVTCSADRNAYVWTQNNDD---KKWKPTLVLLRINRAATCVKWSP  111 (244)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~---~~~~~~~~~~~~~~~v~~~~~~~  111 (244)
                      |+.++     ..+..+..|...+..++.++. +.+|++|+.||+|++|+.+--.   +......+.....+.+.++...+
T Consensus      1034 W~p~G-----~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~ 1108 (1431)
T KOG1240|consen 1034 WNPRG-----ILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCG 1108 (1431)
T ss_pred             CCccc-----eEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEecc
Confidence            66665     788889999999999998874 5999999999999999953111   22233344334567899999999


Q ss_pred             CCCeEEEeeCCCeEEEEEeecCCC-ceEEEe--eec-CCCCceeEE-EecC-CCC-EEEEeeCCCeEEEEEeeecccccC
Q psy11529        112 LENKFAAGSGARLISVCYFESEND-WWVAKH--IKK-PIKSTITCL-DWHP-NNH-LLGCGSTDFKVRVFSAYIKDIESA  184 (244)
Q Consensus       112 ~~~~l~~~~~d~~i~i~d~~~~~~-~~~~~~--~~~-~~~~~v~~~-~~~p-~~~-~l~~~~~dg~i~i~d~~~~~~~~~  184 (244)
                      .+..+|+++.||.|.+.+++.... ......  ... ...+.+.++ +|.. .+. .++.+..-+.|..||++...    
T Consensus      1109 ~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~---- 1184 (1431)
T KOG1240|consen 1109 NGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRH---- 1184 (1431)
T ss_pred             CCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhh----
Confidence            999999999999999999887322 111111  111 112333333 3332 233 78888899999999995322    


Q ss_pred             CCCCCCCccccccceeEEe--cCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCCC
Q psy11529        185 PQSTNWGSKSTLGNCLVEL--NNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQV  242 (244)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~  242 (244)
                                    ....+  ...   .+.|++++.+|.+.+++.|+..|.+.+||++=.
T Consensus      1185 --------------~~w~lk~~~~---hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~ 1227 (1431)
T KOG1240|consen 1185 --------------DAWRLKNQLR---HGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFR 1227 (1431)
T ss_pred             --------------hHHhhhcCcc---ccceeEEEecCCceEEEEecCCceEEEEEeecC
Confidence                          22222  222   678999999999999999999999999999743

>KOG2321|consensus

Probab=99.62  E-value=1.6e-13  Score=104.47  Aligned_cols=207  Identities=14%  Similarity=0.096  Sum_probs=138.4

Q ss_pred             CCceEEEEEcCCCCeE-EEecCCCeEEEeeeccCCCcceeeeeeccC--CCceEEEEeCCCCCeEEEEeCCccEEEEeee
Q psy11529          9 INPVTTHAWNNTRQQL-AFTPNNQEVHLYQYEKAANDWSQLDVLDGH--DLKVTGIDWAPNTNRIVTCSADRNAYVWTQN   85 (244)
Q Consensus         9 ~~~v~~~~~~~~~~~l-~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~   85 (244)
                      ...-+.|..+|||+++ |+|..--.|++||+.+      +...+..|  ...|.-.-.+-|-..++.-..|.+|.+..  
T Consensus        51 p~ast~ik~s~DGqY~lAtG~YKP~ikvydlan------LSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHa--  122 (703)
T KOG2321|consen   51 PTASTRIKVSPDGQYLLATGTYKPQIKVYDLAN------LSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHA--  122 (703)
T ss_pred             ccccceeEecCCCcEEEEecccCCceEEEEccc------ceeeeeecccccceeEEEeccchhhheEeecCceeeehh--
Confidence            5666789999999975 6677788999999987      22233334  23444444555666677777788888766  


Q ss_pred             CCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEe
Q psy11529         86 NDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCG  165 (244)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~  165 (244)
                       .-|.. ..   ...+.....++++.-..-|++++....|+-++++.+.-    ...+....+.++++..++-..+|++|
T Consensus       123 -k~G~h-y~---~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrf----L~P~~~~~~~lN~v~in~~hgLla~G  193 (703)
T KOG2321|consen  123 -KYGRH-YR---TRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRF----LNPFETDSGELNVVSINEEHGLLACG  193 (703)
T ss_pred             -hcCee-ee---eecCcCCccccccCCCccEEEeecCcceEEEEcccccc----ccccccccccceeeeecCccceEEec
Confidence             23321 11   22344556777765434455555555566667777653    33334445789999999999999999


Q ss_pred             eCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCC--CCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCCCC
Q psy11529        166 STDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSS--SGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQVL  243 (244)
Q Consensus       166 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~  243 (244)
                      +.+|.|..||.|......            +.........|.  .....|+++.|+-+|-.+++|..+|.+.|||++.-.
T Consensus       194 t~~g~VEfwDpR~ksrv~------------~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~  261 (703)
T KOG2321|consen  194 TEDGVVEFWDPRDKSRVG------------TLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASK  261 (703)
T ss_pred             ccCceEEEecchhhhhhe------------eeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCC
Confidence            999999999997544321            111111111120  003359999999999999999999999999999876


Q ss_pred             C
Q psy11529        244 P  244 (244)
Q Consensus       244 p  244 (244)
                      |
T Consensus       262 p  262 (703)
T KOG2321|consen  262 P  262 (703)
T ss_pred             c
Confidence            5

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.62  E-value=6.6e-13  Score=104.17  Aligned_cols=173  Identities=17%  Similarity=0.173  Sum_probs=111.1

Q ss_pred             eEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCC---ccEEEEeeeCCCCCceeeEEEeccCcceEEEE
Q psy11529         32 EVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSAD---RNAYVWTQNNDDKKWKPTLVLLRINRAATCVK  108 (244)
Q Consensus        32 ~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~  108 (244)
                      .|.++|.++     .....+..+...+....|+|+|+.|+..+.+   ..|.+||  +.+++....   ....+......
T Consensus       180 ~l~~~d~~g-----~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~--l~~g~~~~l---~~~~g~~~~~~  249 (430)
T PRK00178        180 TLQRSDYDG-----ARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQN--LDTGRREQI---TNFEGLNGAPA  249 (430)
T ss_pred             EEEEECCCC-----CCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEE--CCCCCEEEc---cCCCCCcCCeE
Confidence            477777766     3334455577789999999999998876543   3688888  777763322   22334455789


Q ss_pred             ECCCCCeEEEe-eCCC--eEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEeeC-CC--eEEEEEeeecccc
Q psy11529        109 WSPLENKFAAG-SGAR--LISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGST-DF--KVRVFSAYIKDIE  182 (244)
Q Consensus       109 ~~~~~~~l~~~-~~d~--~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~-dg--~i~i~d~~~~~~~  182 (244)
                      |+|+|+.|+.. ..++  .|.++|++++..     .....+........|+|||+.|+..+. +|  .|+++|+      
T Consensus       250 ~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~-----~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~------  318 (430)
T PRK00178        250 WSPDGSKLAFVLSKDGNPEIYVMDLASRQL-----SRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNV------  318 (430)
T ss_pred             ECCCCCEEEEEEccCCCceEEEEECCCCCe-----EEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEEC------
Confidence            99999988754 4444  577777776643     222333445667899999998776654 33  4666665      


Q ss_pred             cCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCC-C--cEEEEeCCC
Q psy11529        183 SAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHD-G--SINVRMSQQ  241 (244)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-g--~i~vwd~~~  241 (244)
                                  ..++.. .+...   ........|+|||++|+..+.+ +  .|.+||+.+
T Consensus       319 ------------~~g~~~-~lt~~---~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~t  364 (430)
T PRK00178        319 ------------NGGRAE-RVTFV---GNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQR  364 (430)
T ss_pred             ------------CCCCEE-EeecC---CCCccceEECCCCCEEEEEEccCCceEEEEEECCC
Confidence                        223321 12111   2233467899999998876643 3  478888764

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.61  E-value=3e-12  Score=97.44  Aligned_cols=190  Identities=12%  Similarity=0.070  Sum_probs=123.3

Q ss_pred             CeE-EEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCCCCCceeeEEEecc
Q psy11529         22 QQL-AFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRI  100 (244)
Q Consensus        22 ~~l-~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~  100 (244)
                      +++ ++-..++.|.|.|..+  .  +.+..+......-..+.|+|||+++++++.|+.|.++|  +.+.+......   .
T Consensus         6 ~l~~V~~~~~~~v~viD~~t--~--~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD--~~~~~~v~~i~---~   76 (369)
T PF02239_consen    6 NLFYVVERGSGSVAVIDGAT--N--KVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVID--LATGKVVATIK---V   76 (369)
T ss_dssp             GEEEEEEGGGTEEEEEETTT-----SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEE--TTSSSEEEEEE----
T ss_pred             cEEEEEecCCCEEEEEECCC--C--eEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEE--CCcccEEEEEe---c
Confidence            344 3445689999999877  4  66777775544445678999999999999999999999  78877544443   3


Q ss_pred             CcceEEEEECCCCCeEEEee-CCCeEEEEEeecCCCceEEEeeec---CCCCceeEEEecCCCCEEEEeeC-CCeEEEEE
Q psy11529        101 NRAATCVKWSPLENKFAAGS-GARLISVCYFESENDWWVAKHIKK---PIKSTITCLDWHPNNHLLGCGST-DFKVRVFS  175 (244)
Q Consensus       101 ~~~v~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~---~~~~~v~~~~~~p~~~~l~~~~~-dg~i~i~d  175 (244)
                      .....++++++||+++++++ ..+.+.++|.++.+..........   .....+..+..+|.+..++..-. .+.|.+.|
T Consensus        77 G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVd  156 (369)
T PF02239_consen   77 GGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVD  156 (369)
T ss_dssp             SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEE
T ss_pred             CCCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEE
Confidence            45678999999999988775 589999999888765222221111   12356778888898885655554 47888878


Q ss_pred             eeecccccCCCCCCCCccccccc--eeEEecCCCCCCCCeEEEEEecCCCEEEEe-eCCCcEEEEeCCCC
Q psy11529        176 AYIKDIESAPQSTNWGSKSTLGN--CLVELNNSSSGGGWIHSVAFSKDGNKLCWT-SHDGSINVRMSQQV  242 (244)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~vwd~~~~  242 (244)
                      ..                  ..+  ....+..    ........|+|+++|++.+ ..+..|-++|.++.
T Consensus       157 y~------------------d~~~~~~~~i~~----g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~  204 (369)
T PF02239_consen  157 YS------------------DPKNLKVTTIKV----GRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTG  204 (369)
T ss_dssp             TT------------------TSSCEEEEEEE------TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTT
T ss_pred             ec------------------cccccceeeecc----cccccccccCcccceeeecccccceeEEEeeccc
Confidence            62                  222  2223333    5678899999999987665 45668888888764

...

>KOG0280|consensus

Probab=99.61  E-value=1.1e-13  Score=97.21  Aligned_cols=204  Identities=12%  Similarity=0.071  Sum_probs=141.6

Q ss_pred             eEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCC-CCCeEEEEeCCccEEEEeeeCCCCC
Q psy11529         12 VTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAP-NTNRIVTCSADRNAYVWTQNNDDKK   90 (244)
Q Consensus        12 v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~   90 (244)
                      ..++.|++-+..++++..+|.+.+-+.+.  ...+..+.++.|+.+++..+|+. +.+.+++|++|+.+..||++. .++
T Consensus       124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~--~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~-p~~  200 (339)
T KOG0280|consen  124 ALSLDISTSGTKIFVSDSRGSISGVYETE--MVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRI-PKT  200 (339)
T ss_pred             eeEEEeeccCceEEEEcCCCcEEEEecce--eeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecC-Ccc
Confidence            35678899899999998899999666655  44566778999999999999987 567889999999999999542 333


Q ss_pred             ceeeEEEeccCcceEEEEECCC-CCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCC--CEEEEeeC
Q psy11529         91 WKPTLVLLRINRAATCVKWSPL-ENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNN--HLLGCGST  167 (244)
Q Consensus        91 ~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~--~~l~~~~~  167 (244)
                      +... ....|...|.+|.-+|. +.++++|+.|..|++||.++..+    .....+..+.|..+.++|.-  .+|+++-.
T Consensus       201 ~i~~-n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~k----Pl~~~~v~GGVWRi~~~p~~~~~lL~~CMh  275 (339)
T KOG0280|consen  201 FIWH-NSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGK----PLFKAKVGGGVWRIKHHPEIFHRLLAACMH  275 (339)
T ss_pred             eeee-cceeeecceEEEecCCCCCceEEEeccccceeeeehhcccC----ccccCccccceEEEEecchhhhHHHHHHHh
Confidence            3222 13457888999988874 78999999999999999996654    23334445899999999943  34444433


Q ss_pred             CCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEee-CCCcEE-EEeCC
Q psy11529        168 DFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTS-HDGSIN-VRMSQ  240 (244)
Q Consensus       168 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~-vwd~~  240 (244)
                      +| .+|-+......             .........+.|   .+-+..-.|..-..+|+|++ .|+.++ +|-.-
T Consensus       276 ~G-~ki~~~~~~~~-------------e~~~~~~s~~~h---dSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~  333 (339)
T KOG0280|consen  276 NG-AKILDSSDKVL-------------EFQIVLPSDKIH---DSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHI  333 (339)
T ss_pred             cC-ceEEEeccccc-------------chheeeeccccc---cceeeccccccccceeeeeeccccceeeeeeec
Confidence            44 56666632111             011134445555   55566666644444788876 577755 77543

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.59  E-value=1.5e-11  Score=89.06  Aligned_cols=212  Identities=11%  Similarity=0.114  Sum_probs=142.7

Q ss_pred             CceEEEEEcCCCCeEEEecC-CCeEEEeeeccCCCcceeeeeeccCCCc----------eEEEEeCCCCCeEEEEeC-Cc
Q psy11529         10 NPVTTHAWNNTRQQLAFTPN-NQEVHLYQYEKAANDWSQLDVLDGHDLK----------VTGIDWAPNTNRIVTCSA-DR   77 (244)
Q Consensus        10 ~~v~~~~~~~~~~~l~~~~~-d~~v~v~~~~~~~~~~~~~~~~~~~~~~----------v~~~~~~~~~~~l~~~~~-d~   77 (244)
                      .+-+.++++++|++++++.. .|.|.++-+... +.+........|.+.          +....+.|++++|++..- --
T Consensus        89 ~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~d-G~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~D  167 (346)
T COG2706          89 SPPCYVSVDEDGRFVFVANYHSGSVSVYPLQAD-GSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTD  167 (346)
T ss_pred             CCCeEEEECCCCCEEEEEEccCceEEEEEcccC-CccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCc
Confidence            34477899999999988864 578999998653 323333233335555          888999999999988743 34


Q ss_pred             cEEEEeeeCCCCCceeeEEE-eccCcceEEEEECCCCCeEEEeeC-CCeEEEEEeecCCCceEEEeeec------CCCCc
Q psy11529         78 NAYVWTQNNDDKKWKPTLVL-LRINRAATCVKWSPLENKFAAGSG-ARLISVCYFESENDWWVAKHIKK------PIKST  149 (244)
Q Consensus        78 ~i~iwd~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~i~d~~~~~~~~~~~~~~~------~~~~~  149 (244)
                      +|.+|+  +..+...+.... .......+.|.|+|++++.++.++ +++|.+|.++.........+...      ....+
T Consensus       168 ri~~y~--~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~  245 (346)
T COG2706         168 RIFLYD--LDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNW  245 (346)
T ss_pred             eEEEEE--cccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCc
Confidence            799999  667664433221 134456889999999999777665 89999999998633122111111      12357


Q ss_pred             eeEEEecCCCCEEEEeeC-CCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEe
Q psy11529        150 ITCLDWHPNNHLLGCGST-DFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWT  228 (244)
Q Consensus       150 v~~~~~~p~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~  228 (244)
                      ..++..+|||++|+++.. ...|.+|.+....              .....+.....+   ....+.+.|+++|++|+++
T Consensus       246 ~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~--------------g~L~~~~~~~te---g~~PR~F~i~~~g~~Liaa  308 (346)
T COG2706         246 AAAIHISPDGRFLYASNRGHDSIAVFSVDPDG--------------GKLELVGITPTE---GQFPRDFNINPSGRFLIAA  308 (346)
T ss_pred             eeEEEECCCCCEEEEecCCCCeEEEEEEcCCC--------------CEEEEEEEeccC---CcCCccceeCCCCCEEEEE
Confidence            788999999999988653 3478888874211              001222333333   4557899999999999888


Q ss_pred             eCC-CcEEEEeCCC
Q psy11529        229 SHD-GSINVRMSQQ  241 (244)
Q Consensus       229 ~~d-g~i~vwd~~~  241 (244)
                      ..+ ..|.+|..+.
T Consensus       309 ~q~sd~i~vf~~d~  322 (346)
T COG2706         309 NQKSDNITVFERDK  322 (346)
T ss_pred             ccCCCcEEEEEEcC
Confidence            754 4688887654

>KOG1538|consensus

Probab=99.58  E-value=1e-14  Score=112.95  Aligned_cols=148  Identities=18%  Similarity=0.349  Sum_probs=119.4

Q ss_pred             ceEEEEeCCCCCeEEEEeCCccEEEEeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCc
Q psy11529         57 KVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDW  136 (244)
Q Consensus        57 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~  136 (244)
                      .|..++|-|||..|+.+. +..+.+||  ...|....  .+.+|...|++++|+.+|+.+|+|+.|..+.+|.-.-..  
T Consensus        14 ci~d~afkPDGsqL~lAA-g~rlliyD--~ndG~llq--tLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG--   86 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAA-GSRLLVYD--TSDGTLLQ--PLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEG--   86 (1081)
T ss_pred             chheeEECCCCceEEEec-CCEEEEEe--CCCccccc--ccccccceEEEEEEccCCceeccCCCceeEEEecccccc--
Confidence            788999999999888775 45899999  78887543  457899999999999999999999999999999866543  


Q ss_pred             eEEEeeecCCCCceeEEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEE
Q psy11529        137 WVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSV  216 (244)
Q Consensus       137 ~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  216 (244)
                          .....|...|.|+.|+|-...|++++-. ..-+|...                   .+.+...+.    ...+.++
T Consensus        87 ----~LkYSH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~-------------------qK~V~K~ks----s~R~~~C  138 (1081)
T KOG1538|consen   87 ----ILKYSHNDAIQCMSFNPITHQLASCSLS-DFGLWSPE-------------------QKSVSKHKS----SSRIICC  138 (1081)
T ss_pred             ----eeeeccCCeeeEeecCchHHHhhhcchh-hccccChh-------------------hhhHHhhhh----heeEEEe
Confidence                3455688999999999998899988743 35678752                   233333332    5678999


Q ss_pred             EEecCCCEEEEeeCCCcEEEEeC
Q psy11529        217 AFSKDGNKLCWTSHDGSINVRMS  239 (244)
Q Consensus       217 ~~s~~~~~l~~~~~dg~i~vwd~  239 (244)
                      +|..||++|+.|-.+|+|.+-+-
T Consensus       139 sWtnDGqylalG~~nGTIsiRNk  161 (1081)
T KOG1538|consen  139 SWTNDGQYLALGMFNGTISIRNK  161 (1081)
T ss_pred             eecCCCcEEEEeccCceEEeecC
Confidence            99999999999999999988653

>KOG3881|consensus

Probab=99.58  E-value=2.7e-13  Score=98.54  Aligned_cols=158  Identities=13%  Similarity=0.156  Sum_probs=123.5

Q ss_pred             CceEEEEEcCCCC-eEEEecCC--CeEEEeeeccCCCcceeeeeeccC---------CCceEEEEeCCC--CCeEEEEeC
Q psy11529         10 NPVTTHAWNNTRQ-QLAFTPNN--QEVHLYQYEKAANDWSQLDVLDGH---------DLKVTGIDWAPN--TNRIVTCSA   75 (244)
Q Consensus        10 ~~v~~~~~~~~~~-~l~~~~~d--~~v~v~~~~~~~~~~~~~~~~~~~---------~~~v~~~~~~~~--~~~l~~~~~   75 (244)
                      .++..+.-++... .+|+|+..  ..+.|||+++  .  +++..-+..         .-.++++.|-+.  ...|++++.
T Consensus       149 ~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~--~--~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~  224 (412)
T KOG3881|consen  149 PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQ--S--KQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITR  224 (412)
T ss_pred             CceeeeccCCCCCceEecCchhcccceeeeeccc--c--eeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEec
Confidence            4555666666444 45668887  8899999987  2  333222211         123567888886  788999999


Q ss_pred             CccEEEEeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEe
Q psy11529         76 DRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDW  155 (244)
Q Consensus        76 d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~  155 (244)
                      -+.+++||  ...+ ..+...+.-....++++...|.++.+++|...+.+..||++.+..   ....+.+..+.++++..
T Consensus       225 ~hqvR~YD--t~~q-RRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl---~g~~~kg~tGsirsih~  298 (412)
T KOG3881|consen  225 YHQVRLYD--TRHQ-RRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKL---LGCGLKGITGSIRSIHC  298 (412)
T ss_pred             ceeEEEec--Cccc-CcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCcee---eccccCCccCCcceEEE
Confidence            99999999  5544 345555555678899999999999999999999999999999864   44556777899999999


Q ss_pred             cCCCCEEEEeeCCCeEEEEEee
Q psy11529        156 HPNNHLLGCGSTDFKVRVFSAY  177 (244)
Q Consensus       156 ~p~~~~l~~~~~dg~i~i~d~~  177 (244)
                      +|.++++++++-|..++|+|+.
T Consensus       299 hp~~~~las~GLDRyvRIhD~k  320 (412)
T KOG3881|consen  299 HPTHPVLASCGLDRYVRIHDIK  320 (412)
T ss_pred             cCCCceEEeeccceeEEEeecc
Confidence            9999999999999999999994

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.57  E-value=2.8e-12  Score=100.58  Aligned_cols=173  Identities=16%  Similarity=0.173  Sum_probs=106.9

Q ss_pred             eEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeC-Cc--cEEEEeeeCCCCCceeeEEEeccCcceEEEE
Q psy11529         32 EVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSA-DR--NAYVWTQNNDDKKWKPTLVLLRINRAATCVK  108 (244)
Q Consensus        32 ~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~--~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~  108 (244)
                      .|.++|.++     ...+.+..+...+.+..|+|||+.|+..+. ++  .|.+||  +.+++....   ..........+
T Consensus       199 ~l~i~d~dG-----~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~d--l~tg~~~~l---t~~~g~~~~~~  268 (448)
T PRK04792        199 QLMIADYDG-----YNEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQD--IYTQVREKV---TSFPGINGAPR  268 (448)
T ss_pred             EEEEEeCCC-----CCceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEE--CCCCCeEEe---cCCCCCcCCee
Confidence            677777766     223445556778899999999999887654 33  577778  666653222   22233445789


Q ss_pred             ECCCCCeEEE-eeCCCe--EEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEeeC-CC--eEEEEEeeecccc
Q psy11529        109 WSPLENKFAA-GSGARL--ISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGST-DF--KVRVFSAYIKDIE  182 (244)
Q Consensus       109 ~~~~~~~l~~-~~~d~~--i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~-dg--~i~i~d~~~~~~~  182 (244)
                      |+|||+.|+. .+.++.  |.++|+++++.     .....+.......+|+|||+.|+..+. ++  .|+++|+      
T Consensus       269 wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~-----~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl------  337 (448)
T PRK04792        269 FSPDGKKLALVLSKDGQPEIYVVDIATKAL-----TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNL------  337 (448)
T ss_pred             ECCCCCEEEEEEeCCCCeEEEEEECCCCCe-----EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEEC------
Confidence            9999998875 455665  55666655542     222233345677899999998876654 44  4555555      


Q ss_pred             cCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeC-CC--cEEEEeCCC
Q psy11529        183 SAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSH-DG--SINVRMSQQ  241 (244)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg--~i~vwd~~~  241 (244)
                                  ..++.. .+...   .......+|+|||++|+..+. ++  .|.++|+.+
T Consensus       338 ------------~~g~~~-~Lt~~---g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~  383 (448)
T PRK04792        338 ------------ASGKVS-RLTFE---GEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLET  383 (448)
T ss_pred             ------------CCCCEE-EEecC---CCCCcCeeECCCCCEEEEEEecCCceEEEEEECCC
Confidence                        223322 22111   223445789999998877654 34  355566654

>KOG0974|consensus

Probab=99.56  E-value=8.9e-14  Score=112.15  Aligned_cols=149  Identities=11%  Similarity=0.049  Sum_probs=123.2

Q ss_pred             EEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCCCCCceeeE
Q psy11529         16 AWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKWKPTL   95 (244)
Q Consensus        16 ~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~   95 (244)
                      -++++.-++++|+.-+.|.+|....  .  .....+.+|++.|.++.|+.||+++++.++|.++++|+  +++.+... .
T Consensus       140 g~s~~~~~i~~gsv~~~iivW~~~~--d--n~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~--i~s~~~~~-~  212 (967)
T KOG0974|consen  140 GDSAEELYIASGSVFGEIIVWKPHE--D--NKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWP--IDSREVLG-C  212 (967)
T ss_pred             eccCcEEEEEeccccccEEEEeccc--c--CCcceecccCCceEEEEEccCCcEEEEEecCcceeeee--cccccccC-c
Confidence            3455556888999899999999864  2  22237889999999999999999999999999999999  67766443 3


Q ss_pred             EEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCC-CCceeEEEecCCCCEEEEeeCCCeEEEE
Q psy11529         96 VLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPI-KSTITCLDWHPNNHLLGCGSTDFKVRVF  174 (244)
Q Consensus        96 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~-~~~v~~~~~~p~~~~l~~~~~dg~i~i~  174 (244)
                      ...+|...++.+.|.|+  .+++++.|.+.++|+.+....    . ....| ...+..++..++...++|++.||.+++|
T Consensus       213 ~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~~~~l----~-~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~  285 (967)
T KOG0974|consen  213 TGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVNGTQL----E-VYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLW  285 (967)
T ss_pred             ccccccceeEEEEeccc--eeEEeccceEEEEEeccccee----h-hhhhhhhcceeEEEEcCCceEEEeeccCcchhhh
Confidence            45689999999999998  999999999999997776643    2 33334 4679999999999999999999999999


Q ss_pred             Eeee
Q psy11529        175 SAYI  178 (244)
Q Consensus       175 d~~~  178 (244)
                      |+..
T Consensus       286 ~l~~  289 (967)
T KOG0974|consen  286 DLNG  289 (967)
T ss_pred             hhhc
Confidence            9853

>KOG1354|consensus

Probab=99.55  E-value=3e-13  Score=97.04  Aligned_cols=212  Identities=12%  Similarity=0.152  Sum_probs=143.2

Q ss_pred             CCceEEEEEcCCCC--eEEEecCCCeEEEeeeccCCCcc-------------------------------eeeeee-ccC
Q psy11529          9 INPVTTHAWNNTRQ--QLAFTPNNQEVHLYQYEKAANDW-------------------------------SQLDVL-DGH   54 (244)
Q Consensus         9 ~~~v~~~~~~~~~~--~l~~~~~d~~v~v~~~~~~~~~~-------------------------------~~~~~~-~~~   54 (244)
                      ..+|..+.|.++++  .++..+.|.+|++|.+.....+.                               .+.+.+ .+|
T Consensus        84 eEKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaH  163 (433)
T KOG1354|consen   84 EEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAH  163 (433)
T ss_pred             hhhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccc
Confidence            56789999998765  56777789999999875411100                               000111 357


Q ss_pred             CCceEEEEeCCCCCeEEEEeCCccEEEEeeeCCCCCceeeEEEecc-----CcceEEEEECCC-CCeEEEeeCCCeEEEE
Q psy11529         55 DLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRI-----NRAATCVKWSPL-ENKFAAGSGARLISVC  128 (244)
Q Consensus        55 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~-----~~~v~~~~~~~~-~~~l~~~~~d~~i~i~  128 (244)
                      .-.|+++.++.|+..++++ +|-+|.+|++...++... ...+..+     ..-|++..|+|. .+.++.++..|+|++.
T Consensus       164 tyhiNSIS~NsD~Et~lSA-DdLRINLWnlei~d~sFn-IVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLc  241 (433)
T KOG1354|consen  164 TYHINSISVNSDKETFLSA-DDLRINLWNLEIIDQSFN-IVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLC  241 (433)
T ss_pred             eeEeeeeeecCccceEeec-cceeeeeccccccCCcee-EEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEe
Confidence            8889999999999988877 588999999644443321 2222222     245788999996 6788889999999999


Q ss_pred             EeecCCCceE-EEe-----------eecCCCCceeEEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccc
Q psy11529        129 YFESENDWWV-AKH-----------IKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTL  196 (244)
Q Consensus       129 d~~~~~~~~~-~~~-----------~~~~~~~~v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~  196 (244)
                      |++....-.. .+.           .+...-..|..+.|+++|+++++-. =-+|++||+.                 ..
T Consensus       242 DmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRD-yltvk~wD~n-----------------me  303 (433)
T KOG1354|consen  242 DMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRD-YLTVKLWDLN-----------------ME  303 (433)
T ss_pred             echhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEec-cceeEEEecc-----------------cc
Confidence            9985432000 000           1111125788999999999998743 3689999984                 23


Q ss_pred             cceeEEecCCCCC------------CCCeEEEEEecCCCEEEEeeCCCcEEEEeCC
Q psy11529        197 GNCLVELNNSSSG------------GGWIHSVAFSKDGNKLCWTSHDGSINVRMSQ  240 (244)
Q Consensus       197 ~~~~~~~~~~~~~------------~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~  240 (244)
                      .+++.+++.|.-.            -..-..++|+-++.+++||+.....+++++.
T Consensus       304 ~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~  359 (433)
T KOG1354|consen  304 AKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLA  359 (433)
T ss_pred             CCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCC
Confidence            4455555544100            1123468899999999999999999999954

>KOG2315|consensus

Probab=99.55  E-value=9.7e-12  Score=94.55  Aligned_cols=201  Identities=12%  Similarity=0.185  Sum_probs=134.3

Q ss_pred             eEEeCCCceEEEEEcCCCC--eEEE-----ecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCe-EEEEeC
Q psy11529          4 VYSFGINPVTTHAWNNTRQ--QLAF-----TPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNR-IVTCSA   75 (244)
Q Consensus         4 ~~~~~~~~v~~~~~~~~~~--~l~~-----~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~   75 (244)
                      .+.++...|+.+.+||.+.  .+|+     .+.-..|+||..... +....+..-.-....--.+.|++-|.- |+.++.
T Consensus       160 ~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~-~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLast  238 (566)
T KOG2315|consen  160 QHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEE-GQHQPVANKSFFKADKVQMKWNKLGTALLVLAST  238 (566)
T ss_pred             eeeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccc-cccchhhhccccccceeEEEeccCCceEEEEEEE
Confidence            4567788999999999743  3433     245568999998631 111111111112233346788886652 222221


Q ss_pred             --C---------ccEEEEeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEee--CCCeEEEEEeecCCCceEEEee
Q psy11529         76 --D---------RNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGS--GARLISVCYFESENDWWVAKHI  142 (244)
Q Consensus        76 --d---------~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~d~~i~i~d~~~~~~~~~~~~~  142 (244)
                        |         .++++.+  .+...   ........++|.++.|+|+++.++++.  .-..+.|||++..-       .
T Consensus       239 dVDktn~SYYGEq~Lyll~--t~g~s---~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~-------v  306 (566)
T KOG2315|consen  239 DVDKTNASYYGEQTLYLLA--TQGES---VSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKP-------V  306 (566)
T ss_pred             eecCCCccccccceEEEEE--ecCce---EEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCE-------e
Confidence              2         4577777  44222   222234579999999999998877654  46789999987652       2


Q ss_pred             ecCCCCceeEEEecCCCCEEEEeeC---CCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEe
Q psy11529        143 KKPIKSTITCLDWHPNNHLLGCGST---DFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFS  219 (244)
Q Consensus       143 ~~~~~~~v~~~~~~p~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  219 (244)
                      ..-..++-+++-|+|.|++|+.++-   .|.|-+||+                  ...+++..+...     .-+-+.|+
T Consensus       307 ~df~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv------------------~n~K~i~~~~a~-----~tt~~eW~  363 (566)
T KOG2315|consen  307 FDFPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDV------------------PNRKLIAKFKAA-----NTTVFEWS  363 (566)
T ss_pred             EeCCCCCccceEECCCCCEEEEeecCCCCCceEEEec------------------cchhhccccccC-----CceEEEEc
Confidence            2223467789999999999888765   479999999                  667777777653     34668999


Q ss_pred             cCCCEEEEeeC------CCcEEEEeCC
Q psy11529        220 KDGNKLCWTSH------DGSINVRMSQ  240 (244)
Q Consensus       220 ~~~~~l~~~~~------dg~i~vwd~~  240 (244)
                      |||++++|+..      |+.++||+..
T Consensus       364 PdGe~flTATTaPRlrvdNg~Kiwhyt  390 (566)
T KOG2315|consen  364 PDGEYFLTATTAPRLRVDNGIKIWHYT  390 (566)
T ss_pred             CCCcEEEEEeccccEEecCCeEEEEec
Confidence            99999998875      6789999875

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.55  E-value=6.1e-12  Score=98.02  Aligned_cols=182  Identities=16%  Similarity=0.101  Sum_probs=107.4

Q ss_pred             CeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCe--E-EEEeCCc--cEEEEeeeCCCCCceeeEEEeccCcceE
Q psy11529         31 QEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNR--I-VTCSADR--NAYVWTQNNDDKKWKPTLVLLRINRAAT  105 (244)
Q Consensus        31 ~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--l-~~~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~v~  105 (244)
                      ..|.+.|.++  .   ....+......+.+-+|+|||+.  + ++...++  .|.+.+  +.+++.....   ...+...
T Consensus       165 ~~l~~~d~dG--~---~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~--l~~g~~~~lt---~~~g~~~  234 (428)
T PRK01029        165 GELWSVDYDG--Q---NLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGS--LENPAGKKIL---ALQGNQL  234 (428)
T ss_pred             ceEEEEcCCC--C---CceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEE--CCCCCceEee---cCCCCcc
Confidence            3677777766  3   33344445566778899999975  3 2333344  455666  7777643332   3344556


Q ss_pred             EEEECCCCCeEEEeeC-CC----eEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEee-CCCeEEEEEeeec
Q psy11529        106 CVKWSPLENKFAAGSG-AR----LISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGS-TDFKVRVFSAYIK  179 (244)
Q Consensus       106 ~~~~~~~~~~l~~~~~-d~----~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~-~dg~i~i~d~~~~  179 (244)
                      ..+|+|||+.|+..+. ++    .+..|++..+.. .................+|+|||+.|+..+ .+|...+|.+...
T Consensus       235 ~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~-g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~  313 (428)
T PRK01029        235 MPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAI-GKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQID  313 (428)
T ss_pred             ceEECCCCCEEEEEECCCCCcceeEEEeecccCCC-CcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECc
Confidence            7899999999887653 22    334466654311 011222222223446789999999887765 4665556654210


Q ss_pred             ccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCC---CcEEEEeCCC
Q psy11529        180 DIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHD---GSINVRMSQQ  241 (244)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~vwd~~~  241 (244)
                                     ..+.....+..+   ...+....|||||+.|+..+.+   ..|.+||+.+
T Consensus       314 ---------------~~g~~~~~lt~~---~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~  360 (428)
T PRK01029        314 ---------------PEGQSPRLLTKK---YRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLAT  360 (428)
T ss_pred             ---------------ccccceEEeccC---CCCccceeECCCCCEEEEEEcCCCCcEEEEEECCC
Confidence                           011222333333   4456788999999988876543   3689999864

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.54  E-value=2e-11  Score=94.59  Aligned_cols=191  Identities=10%  Similarity=0.110  Sum_probs=114.5

Q ss_pred             CceEEEEEcCCCCe-EEEecC---CCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEE-eCC--ccEEEE
Q psy11529         10 NPVTTHAWNNTRQQ-LAFTPN---NQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTC-SAD--RNAYVW   82 (244)
Q Consensus        10 ~~v~~~~~~~~~~~-l~~~~~---d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d--~~i~iw   82 (244)
                      +.+....|+|||+. ++..+.   +..|+++|+.+  ++.+   .+....+......|+|||+.++.. +.+  ..|.++
T Consensus       188 ~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~t--g~~~---~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~  262 (419)
T PRK04043        188 GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYT--GKKE---KIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLY  262 (419)
T ss_pred             CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCC--CcEE---EEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEE
Confidence            36778999999985 665433   35788888877  4222   333345556678899999877644 333  456666


Q ss_pred             eeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeC-CC--eEEEEEeecCCCceEEEeeecCCCCceeEEEecCCC
Q psy11529         83 TQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSG-AR--LISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNN  159 (244)
Q Consensus        83 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~--~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~  159 (244)
                      |  +.++.....   ...........|+|||+.|+..+. .+  .|.+.|++.++.    ......  +. ....|+|||
T Consensus       263 d--l~~g~~~~L---T~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~----~rlt~~--g~-~~~~~SPDG  330 (419)
T PRK04043        263 D--TNTKTLTQI---TNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSV----EQVVFH--GK-NNSSVSTYK  330 (419)
T ss_pred             E--CCCCcEEEc---ccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCe----EeCccC--CC-cCceECCCC
Confidence            7  666653322   223333445689999998777664 33  466666655543    122111  11 124899999


Q ss_pred             CEEEEeeCC---------CeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeC
Q psy11529        160 HLLGCGSTD---------FKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSH  230 (244)
Q Consensus       160 ~~l~~~~~d---------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~  230 (244)
                      +.|+.....         ..|.+.|+.                  .+.. ..+...    .......|+|||+.|+..+.
T Consensus       331 ~~Ia~~~~~~~~~~~~~~~~I~v~d~~------------------~g~~-~~LT~~----~~~~~p~~SPDG~~I~f~~~  387 (419)
T PRK04043        331 NYIVYSSRETNNEFGKNTFNLYLISTN------------------SDYI-RRLTAN----GVNQFPRFSSDGGSIMFIKY  387 (419)
T ss_pred             CEEEEEEcCCCcccCCCCcEEEEEECC------------------CCCe-EECCCC----CCcCCeEECCCCCEEEEEEc
Confidence            988776643         257777762                  2322 223221    12335889999998776554


Q ss_pred             C-C--cEEEEeCC
Q psy11529        231 D-G--SINVRMSQ  240 (244)
Q Consensus       231 d-g--~i~vwd~~  240 (244)
                      + +  .+.+.+++
T Consensus       388 ~~~~~~L~~~~l~  400 (419)
T PRK04043        388 LGNQSALGIIRLN  400 (419)
T ss_pred             cCCcEEEEEEecC
Confidence            3 2  35555554

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.53  E-value=3.6e-13  Score=95.64  Aligned_cols=226  Identities=13%  Similarity=0.173  Sum_probs=146.0

Q ss_pred             CCceEEEEEcCCCCeEEEecCCCeEEEeeeccCC-CcceeeeeeccCC------------CceEEEEeCCCC--CeEEEE
Q psy11529          9 INPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAA-NDWSQLDVLDGHD------------LKVTGIDWAPNT--NRIVTC   73 (244)
Q Consensus         9 ~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~-~~~~~~~~~~~~~------------~~v~~~~~~~~~--~~l~~~   73 (244)
                      .+.|+++.|...|.++++|...|.|.+|..+... -+++-...+++|+            ..|+.+.|..++  ..++..
T Consensus        26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls  105 (460)
T COG5170          26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS  105 (460)
T ss_pred             cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence            5789999999999999999988999999875511 1123333455553            468888887643  356666


Q ss_pred             eCCccEEEEeeeCC------------------CCCce---------------------eeEEEeccCcceEEEEECCCCC
Q psy11529         74 SADRNAYVWTQNND------------------DKKWK---------------------PTLVLLRINRAATCVKWSPLEN  114 (244)
Q Consensus        74 ~~d~~i~iwd~~~~------------------~~~~~---------------------~~~~~~~~~~~v~~~~~~~~~~  114 (244)
                      +.|.+|++|.+..+                  .|...                     .......|+-.++++.|+.|..
T Consensus       106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~e  185 (460)
T COG5170         106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKE  185 (460)
T ss_pred             cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchh
Confidence            78999999996421                  00000                     0001123566788999998877


Q ss_pred             eEEEeeCCCeEEEEEeecCCCceEEEeeecCCC-----CceeEEEecCC-CCEEEEeeCCCeEEEEEeeecccccCCCCC
Q psy11529        115 KFAAGSGARLISVCYFESENDWWVAKHIKKPIK-----STITCLDWHPN-NHLLGCGSTDFKVRVFSAYIKDIESAPQST  188 (244)
Q Consensus       115 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~-----~~v~~~~~~p~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  188 (244)
                      .++++ .|-.|.+|+++....-+.... .++|.     .-|++..|+|. .+.+...+..|.|++-|+|+..+...+...
T Consensus       186 t~lSa-DdLrINLWnl~i~D~sFnIVD-iKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~kl  263 (460)
T COG5170         186 TLLSA-DDLRINLWNLEIIDGSFNIVD-IKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKL  263 (460)
T ss_pred             eeeec-cceeeeeccccccCCceEEEe-ccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhh
Confidence            77665 577899999887655222222 23332     46889999995 467777888999999999866544221110


Q ss_pred             CCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCCC
Q psy11529        189 NWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQV  242 (244)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~  242 (244)
                      ....  ..+-...-+..-   -..|..+.|+++|+|+++-+. -+|++||+++-
T Consensus       264 fe~~--~D~v~~~ff~ei---vsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~  311 (460)
T COG5170         264 FELT--IDGVDVDFFEEI---VSSISDFKFSDNGRYILSRDY-LTVKIWDVNMA  311 (460)
T ss_pred             hhhc--cCcccchhHHHH---hhhhcceEEcCCCcEEEEecc-ceEEEEecccc
Confidence            0000  000011111222   457889999999999987653 58999999764

>KOG0280|consensus

Probab=99.53  E-value=1.9e-12  Score=91.03  Aligned_cols=184  Identities=15%  Similarity=0.161  Sum_probs=131.3

Q ss_pred             CCceEEEEEcC---CCC-eEEEecCCCeEEEeeeccCCCcceeeeeeccCC------CceEEEEeCCCCCeEEEEeCCcc
Q psy11529          9 INPVTTHAWNN---TRQ-QLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHD------LKVTGIDWAPNTNRIVTCSADRN   78 (244)
Q Consensus         9 ~~~v~~~~~~~---~~~-~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~------~~v~~~~~~~~~~~l~~~~~d~~   78 (244)
                      ...+..+.|..   +|. .++-+...|.|.+|....  .  .....+++-.      ....++.|++.+..++++..+|.
T Consensus        69 ts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~--~--~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~  144 (339)
T KOG0280|consen   69 TSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDE--D--ESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGS  144 (339)
T ss_pred             ccccceeeeeeccCCccceeeeccccceEEEEeecc--c--eeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCc
Confidence            45566777764   444 456667789999998755  2  2223333211      12457889998999999988999


Q ss_pred             EEEEeeeCCCCCceeeEEEeccCcceEEEEECCC-CCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecC
Q psy11529         79 AYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPL-ENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHP  157 (244)
Q Consensus        79 i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p  157 (244)
                      +.+-+  ............+.|.-+++-..|+.. .+.+++|++|+.+..||++..+.  ..-.....|...|.++.-+|
T Consensus       145 ~~~v~--~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~--~i~~n~kvH~~GV~SI~ss~  220 (339)
T KOG0280|consen  145 ISGVY--ETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKT--FIWHNSKVHTSGVVSIYSSP  220 (339)
T ss_pred             EEEEe--cceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcc--eeeecceeeecceEEEecCC
Confidence            98666  444444444456778888999999754 57899999999999999995543  12222345678899998886


Q ss_pred             -CCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecC
Q psy11529        158 -NNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKD  221 (244)
Q Consensus       158 -~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  221 (244)
                       .+.+|+||+.|-.|++||.|                 ..++++..-..    .+.|..+.++|.
T Consensus       221 ~~~~~I~TGsYDe~i~~~DtR-----------------nm~kPl~~~~v----~GGVWRi~~~p~  264 (339)
T KOG0280|consen  221 PKPTYIATGSYDECIRVLDTR-----------------NMGKPLFKAKV----GGGVWRIKHHPE  264 (339)
T ss_pred             CCCceEEEeccccceeeeehh-----------------cccCccccCcc----ccceEEEEecch
Confidence             67899999999999999996                 34666655544    677888888883

>KOG1064|consensus

Probab=99.53  E-value=7.8e-14  Score=118.27  Aligned_cols=189  Identities=13%  Similarity=0.164  Sum_probs=146.3

Q ss_pred             CCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeec-cCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCC
Q psy11529          9 INPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLD-GHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNND   87 (244)
Q Consensus         9 ~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~   87 (244)
                      -..|.++.=+|...+.++|+.||.+++|....  +  +.+..++ .....|+.+.|+.+|+.+..+..||.+.+|.  ..
T Consensus      2208 v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~--~--~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q--~~ 2281 (2439)
T KOG1064|consen 2208 VENVRRMTSHPSDPYYLTGSQDGSVRMFEWGH--G--QQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQ--AS 2281 (2439)
T ss_pred             cCceeeecCCCCCceEEecCCCceEEEEeccC--C--CeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecc--cC
Confidence            45677788888888999999999999999866  3  3444433 2348899999999999999999999999999  44


Q ss_pred             CCCceeeEEEeccCcceEEEEECCCCCeEEEee---CCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEE
Q psy11529         88 DKKWKPTLVLLRINRAATCVKWSPLENKFAAGS---GARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGC  164 (244)
Q Consensus        88 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~  164 (244)
                      .   .+.+.-..|+.....+.|-.  ..+++++   .++.+.+||.......+.   ....|.+.++++++.|..++|++
T Consensus      2282 p---k~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~---v~~~H~~gaT~l~~~P~~qllis 2353 (2439)
T KOG1064|consen 2282 P---KPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSL---VHTCHDGGATVLAYAPKHQLLIS 2353 (2439)
T ss_pred             C---cceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccce---eeeecCCCceEEEEcCcceEEEe
Confidence            2   23455567888888888865  5666654   478899999776654222   22778899999999999999999


Q ss_pred             eeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCCC
Q psy11529        165 GSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQV  242 (244)
Q Consensus       165 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~  242 (244)
                      |+.+|.|++||++                  ..+.++.++.            +. ...++++|+..|.|+||++..+
T Consensus      2354 ggr~G~v~l~D~r------------------qrql~h~~~~------------~~-~~~~f~~~ss~g~ikIw~~s~~ 2400 (2439)
T KOG1064|consen 2354 GGRKGEVCLFDIR------------------QRQLRHTFQA------------LD-TREYFVTGSSEGNIKIWRLSEF 2400 (2439)
T ss_pred             cCCcCcEEEeehH------------------HHHHHHHhhh------------hh-hhheeeccCcccceEEEEcccc
Confidence            9999999999994                  3444443421            33 4568999999999999999865

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.53  E-value=1.1e-11  Score=92.82  Aligned_cols=172  Identities=17%  Similarity=0.178  Sum_probs=131.2

Q ss_pred             CCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCc-cEEEEeeeCCCCCceeeEEEe
Q psy11529         20 TRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADR-NAYVWTQNNDDKKWKPTLVLL   98 (244)
Q Consensus        20 ~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-~i~iwd~~~~~~~~~~~~~~~   98 (244)
                      +|.+++..+. |+..|.+...     .....+. |.+.|.-..+..+++-++.|..|| .+-|+|  ..+++   ...+.
T Consensus       331 ~Gd~ia~VSR-GkaFi~~~~~-----~~~iqv~-~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd--~~~~e---~kr~e  398 (668)
T COG4946         331 NGDYIALVSR-GKAFIMRPWD-----GYSIQVG-KKGGVRYRRIQVDPEGDVIGTNDGDKLGIYD--KDGGE---VKRIE  398 (668)
T ss_pred             CCcEEEEEec-CcEEEECCCC-----CeeEEcC-CCCceEEEEEccCCcceEEeccCCceEEEEe--cCCce---EEEee
Confidence            5778888774 7888887765     2333333 677798888888888899999998 899999  77776   33345


Q ss_pred             ccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEeeCCC----eEEEE
Q psy11529         99 RINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDF----KVRVF  174 (244)
Q Consensus        99 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg----~i~i~  174 (244)
                      ..-+.|.++..+|+|++++++.....+.+.|+++++.    ........+-|+.++|+|+++++|.+--+|    .|++|
T Consensus       399 ~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv----~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Ikly  474 (668)
T COG4946         399 KDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNV----RLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLY  474 (668)
T ss_pred             CCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCe----eEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEE
Confidence            5678899999999999999999999999999999875    444455567899999999999999987766    69999


Q ss_pred             EeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEee
Q psy11529        175 SAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTS  229 (244)
Q Consensus       175 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~  229 (244)
                      |+                  ..++.. .....   .+.-.+.+|.||+++|..-+
T Consensus       475 dm------------------~~~Kiy-~vTT~---ta~DfsPaFD~d~ryLYfLs  507 (668)
T COG4946         475 DM------------------DGGKIY-DVTTP---TAYDFSPAFDPDGRYLYFLS  507 (668)
T ss_pred             ec------------------CCCeEE-EecCC---cccccCcccCCCCcEEEEEe
Confidence            98                  333333 33332   44456778999999776543

>KOG4532|consensus

Probab=99.52  E-value=1.4e-11  Score=85.89  Aligned_cols=198  Identities=12%  Similarity=0.061  Sum_probs=132.7

Q ss_pred             CCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEE-eCCCCCeEEEEeCCccEEEEeeeCCCCCceeeEEEec
Q psy11529         21 RQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGID-WAPNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLR   99 (244)
Q Consensus        21 ~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~   99 (244)
                      ..+||.|+..|...+|...+..   ........|...|+-+. ..-....+..++.|.++++.++  +.+.......  .
T Consensus        84 c~~la~gG~~g~fd~~~~~tn~---~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~--~~~s~~~~~h--~  156 (344)
T KOG4532|consen   84 CVTLADGGASGQFDLFACNTND---GHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVV--SGDSNKFAVH--N  156 (344)
T ss_pred             ccEEEeccccceeeeecccCcc---cceeeecccccchhhhhhhcccccceeeccCCcceeEEEE--ecCcccceee--c
Confidence            3478999999999999987611   23333344444333221 1112334667788999999984  3333222221  1


Q ss_pred             cCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEeeCCCeEEEEEeeec
Q psy11529        100 INRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIK  179 (244)
Q Consensus       100 ~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~  179 (244)
                      ..-.+.+++++++++++++.++...|..|.++.... +.......+....-.+..|+.....+|++++||.+.|||+|..
T Consensus       157 ~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~se-y~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~  235 (344)
T KOG4532|consen  157 QNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESE-YIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNM  235 (344)
T ss_pred             cccceeeeEEcCCCceEEEecCCCcceEEEeCCccc-eeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEeccc
Confidence            113488999999999999999999999999988765 2333344455566678899999999999999999999999754


Q ss_pred             ccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCC--EEEEeeCCCcEEEEeCCCC
Q psy11529        180 DIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGN--KLCWTSHDGSINVRMSQQV  242 (244)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~vwd~~~~  242 (244)
                      ...              -.....-+.||  .+.++.+.|++-|.  +|+..-.=+.+.+-|+++.
T Consensus       236 ~tp--------------m~~~sstrp~h--nGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~  284 (344)
T KOG4532|consen  236 ATP--------------MAEISSTRPHH--NGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNY  284 (344)
T ss_pred             ccc--------------hhhhcccCCCC--CCceEEEEecCCCcceEEEEecCcceEEEEEcccC
Confidence            321              11112223333  89999999998665  4554545678889888875

>KOG4190|consensus

Probab=99.49  E-value=9.9e-14  Score=105.70  Aligned_cols=169  Identities=10%  Similarity=0.059  Sum_probs=118.5

Q ss_pred             EeCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcc---eeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEE
Q psy11529          6 SFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDW---SQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVW   82 (244)
Q Consensus         6 ~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw   82 (244)
                      .-|+..|..++--.+.+.+++++.|++|++|.+...+...   .+..+++.|+.+|.++.|-.+-++++++  |+-|.+|
T Consensus       732 ~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giHlW  809 (1034)
T KOG4190|consen  732 TGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIHLW  809 (1034)
T ss_pred             cCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCcceee
Confidence            3456778777766667788999999999999986533322   3677889999999999999888887765  8899999


Q ss_pred             eeeCCCCCceeeEEEeccCcceEEEEECCC--CCe-EEEeeCCCeEEEEEeecCCCceEEEeee-cCCCCceeEEEecCC
Q psy11529         83 TQNNDDKKWKPTLVLLRINRAATCVKWSPL--ENK-FAAGSGARLISVCYFESENDWWVAKHIK-KPIKSTITCLDWHPN  158 (244)
Q Consensus        83 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~-~~~~~~v~~~~~~p~  158 (244)
                      |  .--++......-....+.+..+..-|+  ... ++.++...+++++|.+...-....+... ...+..+.+++..|.
T Consensus       810 D--PFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~  887 (1034)
T KOG4190|consen  810 D--PFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADK  887 (1034)
T ss_pred             c--ccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccC
Confidence            9  555554332222222333333333333  333 3444778999999988876422222221 223367889999999


Q ss_pred             CCEEEEeeCCCeEEEEEeee
Q psy11529        159 NHLLGCGSTDFKVRVFSAYI  178 (244)
Q Consensus       159 ~~~l~~~~~dg~i~i~d~~~  178 (244)
                      |+.++.+-.+|.|.+.|.|+
T Consensus       888 GN~lAa~LSnGci~~LDaR~  907 (1034)
T KOG4190|consen  888 GNKLAAALSNGCIAILDARN  907 (1034)
T ss_pred             cchhhHHhcCCcEEEEecCC
Confidence            99999999999999999954

>KOG2041|consensus

Probab=99.49  E-value=1e-11  Score=97.51  Aligned_cols=118  Identities=15%  Similarity=0.269  Sum_probs=95.7

Q ss_pred             CCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCC-----------cceeeeeeccCCCceEEEEeCCCCCeEEEEeCCc
Q psy11529          9 INPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAAN-----------DWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADR   77 (244)
Q Consensus         9 ~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~-----------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~   77 (244)
                      .....|++|+.+..++|.|+.||.++|..+.+...           ++..-+++.+|.+.|.-+.|+.+.+.|-+...+|
T Consensus        14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~G   93 (1189)
T KOG2041|consen   14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSG   93 (1189)
T ss_pred             CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCc
Confidence            45678999999999999999999999998755221           1122356789999999999999999999999999


Q ss_pred             cEEEEeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEE
Q psy11529         78 NAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVC  128 (244)
Q Consensus        78 ~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~  128 (244)
                      -|.+|-  +-.+.+...+......+.|.+++|+.+|..+.....||.|.+=
T Consensus        94 lIiVWm--lykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVG  142 (1189)
T KOG2041|consen   94 LIIVWM--LYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVG  142 (1189)
T ss_pred             eEEEEe--eecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEE
Confidence            999999  6677666566556677889999999999998888888776543

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.47  E-value=3.2e-10  Score=84.85  Aligned_cols=197  Identities=11%  Similarity=0.005  Sum_probs=128.9

Q ss_pred             EcCCCCeEEEecC----------CCeEEEeeeccCCCcceeeeeeccC-------CCceEEEEeCCCCCeEEEEe-C-Cc
Q psy11529         17 WNNTRQQLAFTPN----------NQEVHLYQYEKAANDWSQLDVLDGH-------DLKVTGIDWAPNTNRIVTCS-A-DR   77 (244)
Q Consensus        17 ~~~~~~~l~~~~~----------d~~v~v~~~~~~~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~l~~~~-~-d~   77 (244)
                      ++|||+.|+++..          +..|.+||..+  .  +.+..+.-.       ...-..++++|||++|+... . +.
T Consensus        53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t--~--~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~  128 (352)
T TIGR02658        53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQT--H--LPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSP  128 (352)
T ss_pred             ECCCCCEEEEEeccccccccCCCCCEEEEEECcc--C--cEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCC
Confidence            9999998877644          78999999987  4  555555421       12234788999999988765 3 78


Q ss_pred             cEEEEeeeCCCCCceeeEEEec----------------cC-------------cceEEE--------------EECC-CC
Q psy11529         78 NAYVWTQNNDDKKWKPTLVLLR----------------IN-------------RAATCV--------------KWSP-LE  113 (244)
Q Consensus        78 ~i~iwd~~~~~~~~~~~~~~~~----------------~~-------------~~v~~~--------------~~~~-~~  113 (244)
                      .|.+.|  +.+++.........                ..             ......              .|.+ ++
T Consensus       129 ~V~VvD--~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg  206 (352)
T TIGR02658       129 AVGVVD--LEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSG  206 (352)
T ss_pred             EEEEEE--CCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCC
Confidence            999999  56554332211000                00             001111              2233 67


Q ss_pred             CeEEEeeCCCeEEEEEeecCCCceEEEeee--------cCCCCceeEEEecCCCCEEEEee----------CCCeEEEEE
Q psy11529        114 NKFAAGSGARLISVCYFESENDWWVAKHIK--------KPIKSTITCLDWHPNNHLLGCGS----------TDFKVRVFS  175 (244)
Q Consensus       114 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~--------~~~~~~v~~~~~~p~~~~l~~~~----------~dg~i~i~d  175 (244)
                      +++.+... |.|.+.|+.............        .-..+...-++++|+++.+++..          ..+.|.++|
T Consensus       207 ~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD  285 (352)
T TIGR02658       207 RLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVD  285 (352)
T ss_pred             cEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEE
Confidence            77766666 999998865443211111110        01223444599999998877742          124799999


Q ss_pred             eeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCC-EEEEee-CCCcEEEEeCCCC
Q psy11529        176 AYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGN-KLCWTS-HDGSINVRMSQQV  242 (244)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~-~dg~i~vwd~~~~  242 (244)
                      .                  .+.+.+..+..    ...+..++++||++ +|++.. .++.|.+.|+.+.
T Consensus       286 ~------------------~t~kvi~~i~v----G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~  332 (352)
T TIGR02658       286 A------------------KTGKRLRKIEL----GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETG  332 (352)
T ss_pred             C------------------CCCeEEEEEeC----CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCC
Confidence            8                  77888888876    67899999999999 777665 6788999998765

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=99.46  E-value=1.1e-09  Score=77.29  Aligned_cols=221  Identities=10%  Similarity=0.096  Sum_probs=130.8

Q ss_pred             EEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeee---ccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCCCCCc
Q psy11529         15 HAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVL---DGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKW   91 (244)
Q Consensus        15 ~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~   91 (244)
                      ++.+.+|+.||+- .|..|.|-...++-.  ..+...   +.....=.-++||||+..||.+...|+|+++|  +.... 
T Consensus         3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~--si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfd--l~g~~-   76 (282)
T PF15492_consen    3 LALSSDGKLLAIL-QDQCIEIRSAKDDFS--SIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFD--LMGSE-   76 (282)
T ss_pred             eeecCCCcEEEEE-eccEEEEEeccCCch--heeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEe--cccce-
Confidence            5678899988876 577788777655211  111222   22223346799999999999999999999999  44332 


Q ss_pred             eeeEEE-----eccCcceEEEEECCC------CCeEEEeeCCCeEEEEEeecC--CCceEE-Eeee-cCCCCceeEEEec
Q psy11529         92 KPTLVL-----LRINRAATCVKWSPL------ENKFAAGSGARLISVCYFESE--NDWWVA-KHIK-KPIKSTITCLDWH  156 (244)
Q Consensus        92 ~~~~~~-----~~~~~~v~~~~~~~~------~~~l~~~~~d~~i~i~d~~~~--~~~~~~-~~~~-~~~~~~v~~~~~~  156 (244)
                      ...+..     ......|..+.|-+.      ...|++-..+|.++-|-+..+  +..... ...+ ......|.++.++
T Consensus        77 lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~  156 (282)
T PF15492_consen   77 LFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYH  156 (282)
T ss_pred             eEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEc
Confidence            111111     012345666666543      224777778888887776432  221111 1112 2235789999999


Q ss_pred             CCCCEEEEeeCC-C----------eEEEEEeeecccccCCCCCC---CCccccccce-------eEEecCCCCCCCCeEE
Q psy11529        157 PNNHLLGCGSTD-F----------KVRVFSAYIKDIESAPQSTN---WGSKSTLGNC-------LVELNNSSSGGGWIHS  215 (244)
Q Consensus       157 p~~~~l~~~~~d-g----------~i~i~d~~~~~~~~~~~~~~---~~~~~~~~~~-------~~~~~~~~~~~~~v~~  215 (244)
                      |..++|++|+.. .          -+.-|.+-............   ......+...       +.......  ...|..
T Consensus       157 p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~--~d~i~k  234 (282)
T PF15492_consen  157 PKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQE--QDGIFK  234 (282)
T ss_pred             CCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccC--CCceEE
Confidence            998887776532 1          25667663222211111100   0000000000       11111111  678999


Q ss_pred             EEEecCCCEEEEeeCCCcEEEEeCCCCC
Q psy11529        216 VAFSKDGNKLCWTSHDGSINVRMSQQVL  243 (244)
Q Consensus       216 ~~~s~~~~~l~~~~~dg~i~vwd~~~~~  243 (244)
                      |..||||..||+...+|.|.+|++..+.
T Consensus       235 mSlSPdg~~La~ih~sG~lsLW~iPsL~  262 (282)
T PF15492_consen  235 MSLSPDGSLLACIHFSGSLSLWEIPSLR  262 (282)
T ss_pred             EEECCCCCEEEEEEcCCeEEEEecCcch
Confidence            9999999999999999999999998763

>KOG1334|consensus

Probab=99.46  E-value=8.6e-13  Score=98.65  Aligned_cols=209  Identities=14%  Similarity=0.104  Sum_probs=149.6

Q ss_pred             CCCceEEEEEcCCCC-eEEEecCCCeEEEeeeccCCCcceeee-eeccCCC---ceEEEEeCC-CCCeEEEEeCCccEEE
Q psy11529          8 GINPVTTHAWNNTRQ-QLAFTPNNQEVHLYQYEKAANDWSQLD-VLDGHDL---KVTGIDWAP-NTNRIVTCSADRNAYV   81 (244)
Q Consensus         8 ~~~~v~~~~~~~~~~-~l~~~~~d~~v~v~~~~~~~~~~~~~~-~~~~~~~---~v~~~~~~~-~~~~l~~~~~d~~i~i   81 (244)
                      |.++|.-++.-|+.. -|.+++.|+.+.-+|+..  +...... .-..+..   ....++..| +..++++++.|..+++
T Consensus       231 h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~--~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~Rv  308 (559)
T KOG1334|consen  231 HEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQ--DVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARV  308 (559)
T ss_pred             ccCccceeeecCCCCCcccccccccceeeeeecc--CCccceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhh
Confidence            578999999999654 588899999999999876  2222222 2233333   467888899 4558999999999999


Q ss_pred             EeeeCCCCC--------ceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCC---------ceEEEeeec
Q psy11529         82 WTQNNDDKK--------WKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESEND---------WWVAKHIKK  144 (244)
Q Consensus        82 wd~~~~~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~---------~~~~~~~~~  144 (244)
                      ||.+.-..+        ..+..........|++++|+.++.-|+++..|-.|+++.-..+..         ........+
T Consensus       309 YD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYK  388 (559)
T KOG1334|consen  309 YDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYK  388 (559)
T ss_pred             hcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhc
Confidence            994211111        001111113456799999998888888888888899885333221         011222245


Q ss_pred             CCC--CceeEEEe-cCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecC
Q psy11529        145 PIK--STITCLDW-HPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKD  221 (244)
Q Consensus       145 ~~~--~~v~~~~~-~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  221 (244)
                      +|.  ..|..+-| -|...++++|++=|.|.||+-                  .+++.+.-+.+.   ...|+|+.=+|.
T Consensus       389 GHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K------------------~t~eii~~MegD---r~VVNCLEpHP~  447 (559)
T KOG1334|consen  389 GHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDK------------------KTGEIIRFMEGD---RHVVNCLEPHPH  447 (559)
T ss_pred             ccccccccceeeeccCccceEEecCccceEEEEec------------------chhHHHHHhhcc---cceEeccCCCCC
Confidence            554  34666765 478889999999999999997                  678888888887   678999999999


Q ss_pred             CCEEEEeeCCCcEEEEeC
Q psy11529        222 GNKLCWTSHDGSINVRMS  239 (244)
Q Consensus       222 ~~~l~~~~~dg~i~vwd~  239 (244)
                      -..||+++-|..|+||-.
T Consensus       448 ~PvLAsSGid~DVKIWTP  465 (559)
T KOG1334|consen  448 LPVLASSGIDHDVKIWTP  465 (559)
T ss_pred             CchhhccCCccceeeecC
Confidence            999999999999999976

>KOG1409|consensus

Probab=99.43  E-value=1.7e-11  Score=88.18  Aligned_cols=214  Identities=13%  Similarity=0.164  Sum_probs=149.3

Q ss_pred             eCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeC
Q psy11529          7 FGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNN   86 (244)
Q Consensus         7 ~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~   86 (244)
                      -+.+.|++...-|...-+++.+.|.+++||--.+.+.-+..+  ...-..+++++.+.++...|+.|-..|++.-+.+..
T Consensus        22 G~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI--~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~se   99 (404)
T KOG1409|consen   22 GSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSI--YHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSE   99 (404)
T ss_pred             CchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchh--hhhCCCCceEeeeeccceEEEEEEecceEEEEEhhh
Confidence            345677777777777778899999999999765422211111  222467889999999999999999999988887421


Q ss_pred             CCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCC-------------------------------
Q psy11529         87 DDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESEND-------------------------------  135 (244)
Q Consensus        87 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~-------------------------------  135 (244)
                      .-.+.........|...+..+-|+.....+++.+.|..+..--.+.+..                               
T Consensus       100 dfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~  179 (404)
T KOG1409|consen  100 DFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITM  179 (404)
T ss_pred             hhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEecccccceEE
Confidence            1112222222345677777777776666677666665443222111111                               


Q ss_pred             ------ceEEEeeecCCCCceeEEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCC
Q psy11529        136 ------WWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSG  209 (244)
Q Consensus       136 ------~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (244)
                            .-.......+|.+.+.+++|.|....|.+|..|..+.+||+-.                 ......++.+|   
T Consensus       180 lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg-----------------~~g~~~el~gh---  239 (404)
T KOG1409|consen  180 LKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGG-----------------RKGTAYELQGH---  239 (404)
T ss_pred             EEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccC-----------------Ccceeeeeccc---
Confidence                  0012344567788999999999999999999999999999931                 23345667777   


Q ss_pred             CCCeEEEEEecCCCEEEEeeCCCcEEEEeCCCC
Q psy11529        210 GGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQV  242 (244)
Q Consensus       210 ~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~  242 (244)
                      ...|..+...+.-+.|.+++.||.|.+||++..
T Consensus       240 ~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~  272 (404)
T KOG1409|consen  240 NDKVQALSYAQHTRQLISCGEDGGIVVWNMNVK  272 (404)
T ss_pred             hhhhhhhhhhhhheeeeeccCCCeEEEEeccce
Confidence            888999988888889999999999999998754

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.43  E-value=3.9e-10  Score=96.63  Aligned_cols=215  Identities=11%  Similarity=0.086  Sum_probs=131.6

Q ss_pred             eEEEEEcCCCCeEEEe-cCCCeEEEeeeccCCCcceeeeeeccC-----------------CCceEEEEeCC-CCCeEEE
Q psy11529         12 VTTHAWNNTRQQLAFT-PNNQEVHLYQYEKAANDWSQLDVLDGH-----------------DLKVTGIDWAP-NTNRIVT   72 (244)
Q Consensus        12 v~~~~~~~~~~~l~~~-~~d~~v~v~~~~~~~~~~~~~~~~~~~-----------------~~~v~~~~~~~-~~~~l~~   72 (244)
                      -..+++.++++.|+++ ..++.|+++|..+  +   .+.++.+-                 -..-..++|+| ++..+++
T Consensus       626 P~GIavd~~gn~LYVaDt~n~~Ir~id~~~--~---~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVa  700 (1057)
T PLN02919        626 PQGLAYNAKKNLLYVADTENHALREIDFVN--E---TVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIA  700 (1057)
T ss_pred             CcEEEEeCCCCEEEEEeCCCceEEEEecCC--C---EEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEE
Confidence            4678899988766555 4457899999876  2   33333210                 01235789999 5666667


Q ss_pred             EeCCccEEEEeeeCCCCCceeeEEEe-------c------cCcceEEEEECCCCCeEEE-eeCCCeEEEEEeecCCCceE
Q psy11529         73 CSADRNAYVWTQNNDDKKWKPTLVLL-------R------INRAATCVKWSPLENKFAA-GSGARLISVCYFESENDWWV  138 (244)
Q Consensus        73 ~~~d~~i~iwd~~~~~~~~~~~~~~~-------~------~~~~v~~~~~~~~~~~l~~-~~~d~~i~i~d~~~~~~~~~  138 (244)
                      .+.++.|++||  ..++... .+.-.       +      .-.....++++|+++.|++ -+.++.|++||++++.....
T Consensus       701 d~~~~~I~v~d--~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~  777 (1057)
T PLN02919        701 MAGQHQIWEYN--ISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLL  777 (1057)
T ss_pred             ECCCCeEEEEE--CCCCeEE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEE
Confidence            67788999999  6555421 11000       0      1124567999999885554 45578999999887643110


Q ss_pred             EE---------eeec--------CCCCceeEEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeE
Q psy11529        139 AK---------HIKK--------PIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLV  201 (244)
Q Consensus       139 ~~---------~~~~--------~~~~~v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (244)
                      ..         ....        ..-.....++++++|+++++-+.+++|++||...............+.  ..+..  
T Consensus       778 ~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~--~dG~~--  853 (1057)
T PLN02919        778 AGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGF--KDGKA--  853 (1057)
T ss_pred             EecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCC--CCCcc--
Confidence            00         0000        001234689999999988888889999999984332221100000000  00000  


Q ss_pred             EecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCCC
Q psy11529        202 ELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQV  242 (244)
Q Consensus       202 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~  242 (244)
                       ..+.   -.....++++++|+++++-+.++.|++||+++.
T Consensus       854 -~~a~---l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~  890 (1057)
T PLN02919        854 -LKAQ---LSEPAGLALGENGRLFVADTNNSLIRYLDLNKG  890 (1057)
T ss_pred             -cccc---cCCceEEEEeCCCCEEEEECCCCEEEEEECCCC
Confidence             1111   235678999999998888889999999999764

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.43  E-value=3.3e-10  Score=95.45  Aligned_cols=217  Identities=14%  Similarity=0.214  Sum_probs=140.2

Q ss_pred             CceEEEEEcCCCCeEEEecC------CCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeC---CccEE
Q psy11529         10 NPVTTHAWNNTRQQLAFTPN------NQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSA---DRNAY   80 (244)
Q Consensus        10 ~~v~~~~~~~~~~~l~~~~~------d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~   80 (244)
                      +.-..++|-.||+++|+.+.      -..++||+.++     ....+-+.-.+--.+++|-|.|+++|+...   ...|.
T Consensus       210 d~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~ReG-----~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~Vv  284 (928)
T PF04762_consen  210 DGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSREG-----ELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVV  284 (928)
T ss_pred             CCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCCc-----eEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEE
Confidence            34557999999999998753      25799999876     444444433444457899999999998764   34566


Q ss_pred             EEeeeCCCCCceeeEEEe--ccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCC
Q psy11529         81 VWTQNNDDKKWKPTLVLL--RINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPN  158 (244)
Q Consensus        81 iwd~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~  158 (244)
                      +|.   ++|-....+.+.  .....+..++|++++..||....|. |.+|-..+.. ++.......+....+..+.|+|.
T Consensus       285 FfE---rNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYH-WYLKqei~~~~~~~~~~~~Wdpe  359 (928)
T PF04762_consen  285 FFE---RNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYH-WYLKQEIRFSSSESVNFVKWDPE  359 (928)
T ss_pred             EEe---cCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCE-EEEEEEEEccCCCCCCceEECCC
Confidence            666   455433344433  3456789999999999999987666 9999766553 23333333333445666999995


Q ss_pred             C-CEEEEeeCCCeEEEEEeeecccccCCCCC--------CCC----------ccccccceeEEecCCCCCCCCeEEEEEe
Q psy11529        159 N-HLLGCGSTDFKVRVFSAYIKDIESAPQST--------NWG----------SKSTLGNCLVELNNSSSGGGWIHSVAFS  219 (244)
Q Consensus       159 ~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--------~~~----------~~~~~~~~~~~~~~~~~~~~~v~~~~~s  219 (244)
                      . ..|...+.+|.+..++..-.-........        ..|          ...+..-....+..    ..+|..++|+
T Consensus       360 ~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~----~~~v~~vaf~  435 (928)
T PF04762_consen  360 KPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELEL----PSPVNDVAFS  435 (928)
T ss_pred             CCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcC----CCCcEEEEEe
Confidence            4 46777777787777665322111110000        000          01111122233333    6789999999


Q ss_pred             cCCCEEEEeeCCCcEEEEeCC
Q psy11529        220 KDGNKLCWTSHDGSINVRMSQ  240 (244)
Q Consensus       220 ~~~~~l~~~~~dg~i~vwd~~  240 (244)
                      +++..+++-..||.|.+|...
T Consensus       436 ~~~~~~avl~~d~~l~~~~~~  456 (928)
T PF04762_consen  436 PSNSRFAVLTSDGSLSIYEWD  456 (928)
T ss_pred             CCCCeEEEEECCCCEEEEEec
Confidence            999889999999999998843

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=99.43  E-value=3.2e-10  Score=79.98  Aligned_cols=159  Identities=9%  Similarity=0.170  Sum_probs=106.1

Q ss_pred             EEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeecc-------CCCceEEEEeCCC------CCeEEEEeCCccE
Q psy11529         13 TTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDG-------HDLKVTGIDWAPN------TNRIVTCSADRNA   79 (244)
Q Consensus        13 ~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~-------~~~~v~~~~~~~~------~~~l~~~~~d~~i   79 (244)
                      +-++||||+.+||.+...|+|++||+.+  .   .+..+..       -..+|.++.|-+.      ...|+.-..+|.+
T Consensus        47 Rkl~WSpD~tlLa~a~S~G~i~vfdl~g--~---~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L  121 (282)
T PF15492_consen   47 RKLAWSPDCTLLAYAESTGTIRVFDLMG--S---ELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQL  121 (282)
T ss_pred             eEEEECCCCcEEEEEcCCCeEEEEeccc--c---eeEEcCcccccCCccccceeeeEeeccccccccceeEEEEecccee
Confidence            5689999999999999999999999976  2   2222221       2356777777552      1245566678888


Q ss_pred             EEEeeeCCC-C--CceeeEEEec-cCcceEEEEECCCCCeEEEeeCCC-----------eEEEEEeecCCCceEEEe---
Q psy11529         80 YVWTQNNDD-K--KWKPTLVLLR-INRAATCVKWSPLENKFAAGSGAR-----------LISVCYFESENDWWVAKH---  141 (244)
Q Consensus        80 ~iwd~~~~~-~--~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~-----------~i~i~d~~~~~~~~~~~~---  141 (244)
                      +-|-+...+ .  +....+.+.. .+..|.++.|+|..++|++|+...           -+..|.+-.+.+.+....   
T Consensus       122 ~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~  201 (282)
T PF15492_consen  122 RSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSE  201 (282)
T ss_pred             eeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccC
Confidence            777642221 2  2222333322 467899999999988888876421           256676644433111100   


Q ss_pred             ----------------------eecCCCCceeEEEecCCCCEEEEeeCCCeEEEEEe
Q psy11529        142 ----------------------IKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSA  176 (244)
Q Consensus       142 ----------------------~~~~~~~~v~~~~~~p~~~~l~~~~~dg~i~i~d~  176 (244)
                                            ........|..|..+|||+.||+...+|.|.+|++
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~i  258 (282)
T PF15492_consen  202 DDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEI  258 (282)
T ss_pred             ccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEec
Confidence                                  00123467899999999999999999999999999

>KOG0309|consensus

Probab=99.39  E-value=3.9e-12  Score=99.99  Aligned_cols=207  Identities=13%  Similarity=0.207  Sum_probs=148.3

Q ss_pred             CCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCC--CeEEEEeCCccEEEEeeeC
Q psy11529          9 INPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNT--NRIVTCSADRNAYVWTQNN   86 (244)
Q Consensus         9 ~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~d~~i~iwd~~~   86 (244)
                      .+++.++..+|.|+-+|.++.-| +.+.|+..+...+.-+..+.  .-.|-...|+|..  .+-+.......-.+|++. 
T Consensus        24 ~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~h~t--pw~vad~qws~h~a~~~wiVsts~qkaiiwnlA-   99 (1081)
T KOG0309|consen   24 DGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLHHIT--PWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLA-   99 (1081)
T ss_pred             cCcccceeeccccchhhhhhhcC-eEEEeccCCCCCceeeeccC--cchhcceecccCCCCceeEEecCcchhhhhhhh-
Confidence            67888999999999999998755 77778876443223333222  3457778898843  233333445566789962 


Q ss_pred             CCCCceeeEEEeccCcceEEEEECCC-CCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEe
Q psy11529         87 DDKKWKPTLVLLRINRAATCVKWSPL-ENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCG  165 (244)
Q Consensus        87 ~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~  165 (244)
                      ........+.+.+|...++.+.|+|. ...+++++.|..+..||+++...   .......-......++|+-....+.+.
T Consensus       100 ~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~---p~ys~~~w~s~asqVkwnyk~p~vlas  176 (1081)
T KOG0309|consen  100 KSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHR---PFYSTSSWRSAASQVKWNYKDPNVLAS  176 (1081)
T ss_pred             cCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCc---ceeeeecccccCceeeecccCcchhhh
Confidence            33333335666789999999999987 56799999999999999998865   223333334667889999744444455


Q ss_pred             eCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEec-CCCEEEEeeCCCcEEEEeCCCC
Q psy11529        166 STDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSK-DGNKLCWTSHDGSINVRMSQQV  242 (244)
Q Consensus       166 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~  242 (244)
                      +....|.+||++                 ..+.++..+++|   -..|+.+.|.. ....+.+++.||+|+.||.++.
T Consensus       177 shg~~i~vwd~r-----------------~gs~pl~s~K~~---vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kS  234 (1081)
T KOG0309|consen  177 SHGNDIFVWDLR-----------------KGSTPLCSLKGH---VSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKS  234 (1081)
T ss_pred             ccCCceEEEecc-----------------CCCcceEEeccc---ceeeehHHHhhhhhhhhcccCCCCceeeeccccc
Confidence            677789999996                 456788888887   88888888876 2336788999999999998753

>KOG3914|consensus

Probab=99.39  E-value=2e-11  Score=89.29  Aligned_cols=159  Identities=14%  Similarity=0.121  Sum_probs=109.5

Q ss_pred             eEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEE---eCCccEEEEeeeCCC
Q psy11529         12 VTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTC---SADRNAYVWTQNNDD   88 (244)
Q Consensus        12 v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~---~~d~~i~iwd~~~~~   88 (244)
                      ...+..++.++++|.+..++...++++.......++..... ....-+++.|..+......+   ++...+.+|.  ...
T Consensus        65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~-v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s--~~~  141 (390)
T KOG3914|consen   65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSC-VPKRPTAISFIREDTSVLVADKAGDVYSFDILS--ADS  141 (390)
T ss_pred             ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEee-cccCcceeeeeeccceEEEEeecCCceeeeeec--ccc
Confidence            34556788899999998888888888755111123333332 22333445555444444433   3444555555  333


Q ss_pred             CCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEeeCC
Q psy11529         89 KKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTD  168 (244)
Q Consensus        89 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d  168 (244)
                      +.   ...+.+|-+.+..++|+||++.++++..|..|++-.+.....   ......+|..-|..++.-++- .|++++.|
T Consensus       142 ~~---~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~---IesfclGH~eFVS~isl~~~~-~LlS~sGD  214 (390)
T KOG3914|consen  142 GR---CEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFV---IESFCLGHKEFVSTISLTDNY-LLLSGSGD  214 (390)
T ss_pred             cC---cchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccc---hhhhccccHhheeeeeeccCc-eeeecCCC
Confidence            33   233468999999999999999999999999999966655432   455667899999999998654 68999999


Q ss_pred             CeEEEEEeeecc
Q psy11529        169 FKVRVFSAYIKD  180 (244)
Q Consensus       169 g~i~i~d~~~~~  180 (244)
                      +++++||+++..
T Consensus       215 ~tlr~Wd~~sgk  226 (390)
T KOG3914|consen  215 KTLRLWDITSGK  226 (390)
T ss_pred             CcEEEEecccCC
Confidence            999999996554

>KOG4532|consensus

Probab=99.36  E-value=6.6e-10  Score=77.67  Aligned_cols=150  Identities=8%  Similarity=0.033  Sum_probs=107.9

Q ss_pred             EEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCCCCCceeeEEEeccCcc
Q psy11529         24 LAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRA  103 (244)
Q Consensus        24 l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  103 (244)
                      +..++.|.++++++++.  +..+......  .-.+++++++++++++++.++...|..|.++ ..++.............
T Consensus       131 ~~i~sndht~k~~~~~~--~s~~~~~h~~--~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id-~~sey~~~~~~a~t~D~  205 (344)
T KOG4532|consen  131 LNIASNDHTGKTMVVSG--DSNKFAVHNQ--NLTQNSLHYSNDPSWGSSVGDSRRVFRYAID-DESEYIENIYEAPTSDH  205 (344)
T ss_pred             eeeccCCcceeEEEEec--Ccccceeecc--ccceeeeEEcCCCceEEEecCCCcceEEEeC-CccceeeeeEecccCCC
Confidence            55667888888888876  2112221111  1237899999999999999999999999963 33443333344445566


Q ss_pred             eEEEEECCCCCeEEEeeCCCeEEEEEeecCCC-ceEEEeeecCCCCceeEEEecCCCC--EEEEeeCCCeEEEEEeee
Q psy11529        104 ATCVKWSPLENKFAAGSGARLISVCYFESEND-WWVAKHIKKPIKSTITCLDWHPNNH--LLGCGSTDFKVRVFSAYI  178 (244)
Q Consensus       104 v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~-~~~~~~~~~~~~~~v~~~~~~p~~~--~l~~~~~dg~i~i~d~~~  178 (244)
                      -.+..|+.....+|++..||++.|||++.... ..........|.+.+..+.|+|.|.  +|...-.-+.+.+-|+|+
T Consensus       206 gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~  283 (344)
T KOG4532|consen  206 GFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRN  283 (344)
T ss_pred             ceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEccc
Confidence            77899999999999999999999999987653 1122233345789999999999764  566666678899999964

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.34  E-value=7.7e-10  Score=93.29  Aligned_cols=202  Identities=16%  Similarity=0.290  Sum_probs=137.0

Q ss_pred             CCceEEEEEcCCCCeEEEecCCCeEEEe----eeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEee
Q psy11529          9 INPVTTHAWNNTRQQLAFTPNNQEVHLY----QYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQ   84 (244)
Q Consensus         9 ~~~v~~~~~~~~~~~l~~~~~d~~v~v~----~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~   84 (244)
                      .+.|.++.+-++...++.+..+|.|.+.    +...  .   .....-.-+..|.+++||||+..|+..+.++++.+.+-
T Consensus        75 ~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~--~---~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~  149 (928)
T PF04762_consen   75 NDKIVSFQYLADSESLCIALASGDIILVREDPDPDE--D---EIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTR  149 (928)
T ss_pred             CCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCC--c---eeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEec
Confidence            4679999999999989899899999999    5444  2   22233334678999999999999999988888887642


Q ss_pred             eCC-------------C--------CCce-----------------eeE------EEeccCcceEEEEECCCCCeEEEee
Q psy11529         85 NND-------------D--------KKWK-----------------PTL------VLLRINRAATCVKWSPLENKFAAGS  120 (244)
Q Consensus        85 ~~~-------------~--------~~~~-----------------~~~------~~~~~~~~v~~~~~~~~~~~l~~~~  120 (244)
                      +.+             .        |+..                 +..      .+. ....-..++|-.||.++|+.+
T Consensus       150 ~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss  228 (928)
T PF04762_consen  150 DFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFAVSS  228 (928)
T ss_pred             cceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCcEEEEEE
Confidence            100             0        0000                 000      000 223456789999999999977


Q ss_pred             C------CCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEeeC---CCeEEEEEeeecccccCCCCCCCC
Q psy11529        121 G------ARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGST---DFKVRVFSAYIKDIESAPQSTNWG  191 (244)
Q Consensus       121 ~------d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~  191 (244)
                      -      -..++||+-+ +.    .....++..+--.+++|-|.|++||+.-.   ...|.+|.-               
T Consensus       229 ~~~~~~~~R~iRVy~Re-G~----L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfEr---------------  288 (928)
T PF04762_consen  229 VEPETGSRRVIRVYSRE-GE----LQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFER---------------  288 (928)
T ss_pred             EEcCCCceeEEEEECCC-ce----EEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEec---------------
Confidence            4      2578888755 22    23344455556678999999999998764   345667763               


Q ss_pred             ccccccceeEEecCCC-CCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCC
Q psy11529        192 SKSTLGNCLVELNNSS-SGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQ  241 (244)
Q Consensus       192 ~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~  241 (244)
                          .|-...+|.... .....|..++|++|+..||..-.|. |.+|-..+
T Consensus       289 ----NGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~N  334 (928)
T PF04762_consen  289 ----NGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSN  334 (928)
T ss_pred             ----CCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeC
Confidence                343333332210 0167899999999999999877665 99997765

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.34  E-value=1.2e-09  Score=82.20  Aligned_cols=189  Identities=15%  Similarity=0.189  Sum_probs=133.4

Q ss_pred             EcCCCCeEEEecCCCeEEEeeeccCCCcceeeee---ec-cCC-----CceEEEE-eCC-CCCeEEEEeCCccEEEEeee
Q psy11529         17 WNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDV---LD-GHD-----LKVTGID-WAP-NTNRIVTCSADRNAYVWTQN   85 (244)
Q Consensus        17 ~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~---~~-~~~-----~~v~~~~-~~~-~~~~l~~~~~d~~i~iwd~~   85 (244)
                      .+.||+.++.. ..|.|++||.++  ...+.+..   +. ..+     .+..-+. |++ +|.+++..+. |...+.+  
T Consensus       274 ~nsDGkrIvFq-~~GdIylydP~t--d~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~~--  347 (668)
T COG4946         274 ANSDGKRIVFQ-NAGDIYLYDPET--DSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIMR--  347 (668)
T ss_pred             cCCCCcEEEEe-cCCcEEEeCCCc--CcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEEC--
Confidence            34578888775 468999999877  32222211   00 001     1111122 555 6888888874 6777777  


Q ss_pred             CCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCC-eEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEE
Q psy11529         86 NDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGAR-LISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGC  164 (244)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~  164 (244)
                      ...+-   .+. .++...|.-..+..+++-++.|..|| .+-|+|.+++..     ....+.-+.|.++..+|+|++++.
T Consensus       348 ~~~~~---~iq-v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~-----kr~e~~lg~I~av~vs~dGK~~vv  418 (668)
T COG4946         348 PWDGY---SIQ-VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEV-----KRIEKDLGNIEAVKVSPDGKKVVV  418 (668)
T ss_pred             CCCCe---eEE-cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceE-----EEeeCCccceEEEEEcCCCcEEEE
Confidence            33332   232 35677788888888888899999998 899999998863     333444589999999999999999


Q ss_pred             eeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCC----cEEEEeCC
Q psy11529        165 GSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDG----SINVRMSQ  240 (244)
Q Consensus       165 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg----~i~vwd~~  240 (244)
                      +.+...|.++|+                  .++.....-+..   .+-|+.+.|||+++++|-+--+|    .|+++|+.
T Consensus       419 aNdr~el~vidi------------------dngnv~~idkS~---~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~  477 (668)
T COG4946         419 ANDRFELWVIDI------------------DNGNVRLIDKSE---YGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMD  477 (668)
T ss_pred             EcCceEEEEEEe------------------cCCCeeEecccc---cceeEEEEEcCCceeEEEecCcceeeeeEEEEecC
Confidence            999999999999                  455544333333   67899999999999999776555    58999886


Q ss_pred             C
Q psy11529        241 Q  241 (244)
Q Consensus       241 ~  241 (244)
                      .
T Consensus       478 ~  478 (668)
T COG4946         478 G  478 (668)
T ss_pred             C
Confidence            5

>KOG3914|consensus

Probab=99.33  E-value=9.6e-11  Score=85.82  Aligned_cols=161  Identities=10%  Similarity=0.050  Sum_probs=107.9

Q ss_pred             ceEEEEeCCCCCeEEEEeCCccEEEEeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCc
Q psy11529         57 KVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDW  136 (244)
Q Consensus        57 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~  136 (244)
                      ....+..+++++++|.+..+....+++++....... ...........+.+.|..+......+..-|.++-+|+-.... 
T Consensus        64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~k-l~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~-  141 (390)
T KOG3914|consen   64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAK-LLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADS-  141 (390)
T ss_pred             cccccccCCCceEEEEEeCCCceEEEEEecCCCcce-eeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccc-
Confidence            344556778899999888888877777422222111 222223344555666666655655555444444444333211 


Q ss_pred             eEEEeeecCCCCceeEEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEec-CCCCCCCCeEE
Q psy11529        137 WVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELN-NSSSGGGWIHS  215 (244)
Q Consensus       137 ~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~  215 (244)
                       -......+|-+-++.++|+||+++|+++..|..|++-..                  .....+..+. +|   ..-|..
T Consensus       142 -~~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~y------------------pa~f~IesfclGH---~eFVS~  199 (390)
T KOG3914|consen  142 -GRCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRY------------------PATFVIESFCLGH---KEFVST  199 (390)
T ss_pred             -cCcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEec------------------Ccccchhhhcccc---Hhheee
Confidence             023455678889999999999999999999999999876                  3344455554 46   889999


Q ss_pred             EEEecCCCEEEEeeCCCcEEEEeCCCC
Q psy11529        216 VAFSKDGNKLCWTSHDGSINVRMSQQV  242 (244)
Q Consensus       216 ~~~s~~~~~l~~~~~dg~i~vwd~~~~  242 (244)
                      ++.-++ ..|+++|.|++|++||+.+.
T Consensus       200 isl~~~-~~LlS~sGD~tlr~Wd~~sg  225 (390)
T KOG3914|consen  200 ISLTDN-YLLLSGSGDKTLRLWDITSG  225 (390)
T ss_pred             eeeccC-ceeeecCCCCcEEEEecccC
Confidence            998755 45899999999999999875

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.31  E-value=4.9e-09  Score=81.51  Aligned_cols=171  Identities=10%  Similarity=-0.014  Sum_probs=100.5

Q ss_pred             CeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCe-EEEEeC---CccEEEEeeeCCCCCceeeEEEeccCcceEE
Q psy11529         31 QEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNR-IVTCSA---DRNAYVWTQNNDDKKWKPTLVLLRINRAATC  106 (244)
Q Consensus        31 ~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~  106 (244)
                      ..|.+-|.++  .   ..+.+.... .+....|+|+|+. ++..+.   ...|.++|  +.+++.....   ...+....
T Consensus       169 ~~l~~~d~dg--~---~~~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~d--l~tg~~~~lt---~~~g~~~~  237 (419)
T PRK04043        169 SNIVLADYTL--T---YQKVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYN--LYTGKKEKIA---SSQGMLVV  237 (419)
T ss_pred             ceEEEECCCC--C---ceeEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEE--CCCCcEEEEe---cCCCcEEe
Confidence            4566666655  2   223333233 7788999999985 554433   34577778  7777643322   34555667


Q ss_pred             EEECCCCCeEEEee-CC--CeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEeeC-CC--eEEEEEeeecc
Q psy11529        107 VKWSPLENKFAAGS-GA--RLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGST-DF--KVRVFSAYIKD  180 (244)
Q Consensus       107 ~~~~~~~~~l~~~~-~d--~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~-dg--~i~i~d~~~~~  180 (244)
                      ..|+|||+.++... .+  ..|.++|+..+..    .. ............|+|||+.|+..+. .+  .|++.|+    
T Consensus       238 ~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~----~~-LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl----  308 (419)
T PRK04043        238 SDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTL----TQ-ITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKL----  308 (419)
T ss_pred             eEECCCCCEEEEEEccCCCcEEEEEECCCCcE----EE-cccCCCccCccEECCCCCEEEEEECCCCCceEEEEEC----
Confidence            88999998776543 33  4566666655542    22 2222223445689999997776664 33  5666666    


Q ss_pred             cccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCC---------CcEEEEeCCC
Q psy11529        181 IESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHD---------GSINVRMSQQ  241 (244)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---------g~i~vwd~~~  241 (244)
                                    ..++... +...   ..  ....|||||++|+..+..         ..|.+.|++.
T Consensus       309 --------------~~g~~~r-lt~~---g~--~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~  358 (419)
T PRK04043        309 --------------NSGSVEQ-VVFH---GK--NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNS  358 (419)
T ss_pred             --------------CCCCeEe-CccC---CC--cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCC
Confidence                          2233222 1111   11  124899999988766543         2577777654

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.29  E-value=8.6e-08  Score=69.70  Aligned_cols=184  Identities=15%  Similarity=0.074  Sum_probs=119.0

Q ss_pred             eEEEEEc-CCCCeEEEecCCCeEEEeeeccCCCcceeeeeec--c-CCCceEEEEeCCCCCeEEEEeCC--------ccE
Q psy11529         12 VTTHAWN-NTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLD--G-HDLKVTGIDWAPNTNRIVTCSAD--------RNA   79 (244)
Q Consensus        12 v~~~~~~-~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~--~-~~~~v~~~~~~~~~~~l~~~~~d--------~~i   79 (244)
                      ...+++. +++++++ +.. +.+.++|..+  ++.+.+....  . .....+.+++.|+|++.++....        |.+
T Consensus        42 ~~G~~~~~~~g~l~v-~~~-~~~~~~d~~~--g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v  117 (246)
T PF08450_consen   42 PNGMAFDRPDGRLYV-ADS-GGIAVVDPDT--GKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSV  117 (246)
T ss_dssp             EEEEEEECTTSEEEE-EET-TCEEEEETTT--TEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEE
T ss_pred             CceEEEEccCCEEEE-EEc-CceEEEecCC--CcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccce
Confidence            5667777 6655544 444 4456668776  5445555542  1 34678899999999977765543        456


Q ss_pred             EEEeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEE-eeCCCeEEEEEeecCCC-ceEEEeee--cCCCCceeEEEe
Q psy11529         80 YVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAA-GSGARLISVCYFESEND-WWVAKHIK--KPIKSTITCLDW  155 (244)
Q Consensus        80 ~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d~~i~i~d~~~~~~-~~~~~~~~--~~~~~~v~~~~~  155 (244)
                      ..++  .. ++...   ....-...+.++|+|+++.|++ -+..+.|..++++.... ........  ....+..-.+++
T Consensus       118 ~~~~--~~-~~~~~---~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~v  191 (246)
T PF08450_consen  118 YRID--PD-GKVTV---VADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAV  191 (246)
T ss_dssp             EEEE--TT-SEEEE---EEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEE
T ss_pred             EEEC--CC-CeEEE---EecCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceE
Confidence            6666  44 44222   2233456789999999987764 45678899999986543 11122221  222235788999


Q ss_pred             cCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEe-cCCCEEEE
Q psy11529        156 HPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFS-KDGNKLCW  227 (244)
Q Consensus       156 ~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~  227 (244)
                      ..+|++.++....+.|.++|.                   .++.+..+...   ...+++++|. ++.+.|+.
T Consensus       192 D~~G~l~va~~~~~~I~~~~p-------------------~G~~~~~i~~p---~~~~t~~~fgg~~~~~L~v  242 (246)
T PF08450_consen  192 DSDGNLWVADWGGGRIVVFDP-------------------DGKLLREIELP---VPRPTNCAFGGPDGKTLYV  242 (246)
T ss_dssp             BTTS-EEEEEETTTEEEEEET-------------------TSCEEEEEE-S---SSSEEEEEEESTTSSEEEE
T ss_pred             cCCCCEEEEEcCCCEEEEECC-------------------CccEEEEEcCC---CCCEEEEEEECCCCCEEEE
Confidence            999998888888999999995                   48888888775   5689999995 56565543

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG4547|consensus

Probab=99.29  E-value=1.8e-09  Score=82.90  Aligned_cols=147  Identities=16%  Similarity=0.073  Sum_probs=116.3

Q ss_pred             CCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCCCCCceeeEEEec
Q psy11529         20 TRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLR   99 (244)
Q Consensus        20 ~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~   99 (244)
                      |...++-|...|.|.+|++..  +++.....-..|.+.|+++.++.+-..|.+++.|+.+..|+  ...+...+  ....
T Consensus        69 ~t~~lvlgt~~g~v~~ys~~~--g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~--~~~~~~~~--~~~~  142 (541)
T KOG4547|consen   69 DTSMLVLGTPQGSVLLYSVAG--GEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYIL--EKEKVIIR--IWKE  142 (541)
T ss_pred             CceEEEeecCCccEEEEEecC--CeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEe--cccceeee--eecc
Confidence            344788888899999999987  53333333357999999999999999999999999999999  66665433  3356


Q ss_pred             cCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCC-----CCEEEEe-eCCCeEEE
Q psy11529        100 INRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPN-----NHLLGCG-STDFKVRV  173 (244)
Q Consensus       100 ~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~-----~~~l~~~-~~dg~i~i  173 (244)
                      .+..+.+++.+||+..+++++  +.|++||+++.+.    ...+.+|.++|+++.|-.+     |.+++++ ..+.-+.+
T Consensus       143 ~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kev----v~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~  216 (541)
T KOG4547|consen  143 QKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEV----VITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITV  216 (541)
T ss_pred             CCCccceEEEcCCCCEEEecc--ceEEEEEccCceE----EEEecCCCcceEEEEEEEeccccccceeeeccccccceeE
Confidence            677899999999999999876  7899999999874    7788999999999999876     6665553 34556778


Q ss_pred             EEeee
Q psy11529        174 FSAYI  178 (244)
Q Consensus       174 ~d~~~  178 (244)
                      |-+..
T Consensus       217 w~v~~  221 (541)
T KOG4547|consen  217 WVVEK  221 (541)
T ss_pred             EEEEc
Confidence            87753

>KOG0309|consensus

Probab=99.29  E-value=5.3e-11  Score=93.79  Aligned_cols=227  Identities=19%  Similarity=0.214  Sum_probs=154.6

Q ss_pred             EEeCCCceEEEEEcCCC--CeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCC-CCeEEEEeCCccEEE
Q psy11529          5 YSFGINPVTTHAWNNTR--QQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPN-TNRIVTCSADRNAYV   81 (244)
Q Consensus         5 ~~~~~~~v~~~~~~~~~--~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~i   81 (244)
                      ++...-.|-.+.|+|..  .+-++......-.+|++..+.. -.....+.+|..+|+.+.|+|. ...+++++.|-.+..
T Consensus        63 ~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~-~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~  141 (1081)
T KOG0309|consen   63 HHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSS-NAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHA  141 (1081)
T ss_pred             eccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCCc-cceEEEEecCccceeccccCCCCCcceeecccccccee
Confidence            33345667788898854  3455555556778899854222 1445567889999999999994 558899999999999


Q ss_pred             EeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCC-CC
Q psy11529         82 WTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPN-NH  160 (244)
Q Consensus        82 wd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~-~~  160 (244)
                      ||  ++.... +......-......++|+.....+.+.+..+.+.+||.+.+..   .....+.|-..++.++|+.- ..
T Consensus       142 wd--~rSp~~-p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~---pl~s~K~~vs~vn~~~fnr~~~s  215 (1081)
T KOG0309|consen  142 WD--MRSPHR-PFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGST---PLCSLKGHVSSVNSIDFNRFKYS  215 (1081)
T ss_pred             ee--ccCCCc-ceeeeecccccCceeeecccCcchhhhccCCceEEEeccCCCc---ceEEecccceeeehHHHhhhhhh
Confidence            99  454432 2223334456677899987655556666778899999998875   45555667788899998863 34


Q ss_pred             EEEEeeCCCeEEEEEeeecccccCC-----------CCCCCCc--------------------------cccccceeEEe
Q psy11529        161 LLGCGSTDFKVRVFSAYIKDIESAP-----------QSTNWGS--------------------------KSTLGNCLVEL  203 (244)
Q Consensus       161 ~l~~~~~dg~i~i~d~~~~~~~~~~-----------~~~~~~~--------------------------~~~~~~~~~~~  203 (244)
                      .+.++++||+|+.||......+...           ...+++.                          .....++++.|
T Consensus       216 ~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F  295 (1081)
T KOG0309|consen  216 EIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTF  295 (1081)
T ss_pred             hhcccCCCCceeeecccccccccceeccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeee
Confidence            7788899999999997533221100           0000000                          11234677888


Q ss_pred             cCCCCCCCCeEEEEEec--------CCC--EEEEeeCCCcEEEEeCCC
Q psy11529        204 NNSSSGGGWIHSVAFSK--------DGN--KLCWTSHDGSINVRMSQQ  241 (244)
Q Consensus       204 ~~~~~~~~~v~~~~~s~--------~~~--~l~~~~~dg~i~vwd~~~  241 (244)
                      .+|   ...|....|-.        |.+  .|+|-+.|..+++|-+.+
T Consensus       296 ~GH---~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~  340 (1081)
T KOG0309|consen  296 VGH---DDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS  340 (1081)
T ss_pred             cCc---chHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence            888   77776665543        222  699999999999998864

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.26  E-value=6.7e-08  Score=70.26  Aligned_cols=199  Identities=15%  Similarity=0.131  Sum_probs=122.0

Q ss_pred             EEEEEcC-CCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeC-CCCCeEEEEeCCccEEEEeeeCCCCC
Q psy11529         13 TTHAWNN-TRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWA-PNTNRIVTCSADRNAYVWTQNNDDKK   90 (244)
Q Consensus        13 ~~~~~~~-~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~d~~i~iwd~~~~~~~   90 (244)
                      .++.|.+ ++.++++--..+.|..|+..+  +   ....+....  ...+++. +++.+ +.+.. +.+.++|  ..+++
T Consensus         3 Egp~~d~~~g~l~~~D~~~~~i~~~~~~~--~---~~~~~~~~~--~~G~~~~~~~g~l-~v~~~-~~~~~~d--~~~g~   71 (246)
T PF08450_consen    3 EGPVWDPRDGRLYWVDIPGGRIYRVDPDT--G---EVEVIDLPG--PNGMAFDRPDGRL-YVADS-GGIAVVD--PDTGK   71 (246)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEETTT--T---EEEEEESSS--EEEEEEECTTSEE-EEEET-TCEEEEE--TTTTE
T ss_pred             cceEEECCCCEEEEEEcCCCEEEEEECCC--C---eEEEEecCC--CceEEEEccCCEE-EEEEc-CceEEEe--cCCCc
Confidence            3678998 677777776789999999987  3   333333222  6777787 56544 44444 4456668  78887


Q ss_pred             ceeeEEEec---cCcceEEEEECCCCCeEEEeeCCCe------EEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCE
Q psy11529         91 WKPTLVLLR---INRAATCVKWSPLENKFAAGSGARL------ISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHL  161 (244)
Q Consensus        91 ~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~d~~------i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~  161 (244)
                      .........   .....+.+++.|+|+..++......      =.+|.+.....   ...... .-...+.++|+|+++.
T Consensus        72 ~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~~~---~~~~~~-~~~~pNGi~~s~dg~~  147 (246)
T PF08450_consen   72 VTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPDGK---VTVVAD-GLGFPNGIAFSPDGKT  147 (246)
T ss_dssp             EEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETTSE---EEEEEE-EESSEEEEEEETTSSE
T ss_pred             EEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCCCe---EEEEec-CcccccceEECCcchh
Confidence            655555431   3456889999999997776554321      23444444422   112211 2346789999999986


Q ss_pred             EE-EeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCC
Q psy11529        162 LG-CGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQ  240 (244)
Q Consensus       162 l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~  240 (244)
                      |+ +-+..+.|..|++.......           ...+....+...   .+..-.+++..+|++.++....+.|.++|.+
T Consensus       148 lyv~ds~~~~i~~~~~~~~~~~~-----------~~~~~~~~~~~~---~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~  213 (246)
T PF08450_consen  148 LYVADSFNGRIWRFDLDADGGEL-----------SNRRVFIDFPGG---PGYPDGLAVDSDGNLWVADWGGGRIVVFDPD  213 (246)
T ss_dssp             EEEEETTTTEEEEEEEETTTCCE-----------EEEEEEEE-SSS---SCEEEEEEEBTTS-EEEEEETTTEEEEEETT
T ss_pred             eeecccccceeEEEeccccccce-----------eeeeeEEEcCCC---CcCCCcceEcCCCCEEEEEcCCCEEEEECCC
Confidence            65 55667889999884221100           011222333332   2347889999999988887788899998865

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG1064|consensus

Probab=99.25  E-value=1.1e-10  Score=99.92  Aligned_cols=158  Identities=12%  Similarity=0.089  Sum_probs=124.5

Q ss_pred             CCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecC
Q psy11529         54 HDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESE  133 (244)
Q Consensus        54 ~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~  133 (244)
                      +-..|.++.=+|...+.++|+.||.+++|.  ...+..+......+. ..++.+.|+.+|+.+..+..||.+.+|.....
T Consensus      2207 ~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~--w~~~~~v~~~rt~g~-s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~pk 2283 (2439)
T KOG1064|consen 2207 PVENVRRMTSHPSDPYYLTGSQDGSVRMFE--WGHGQQVVCFRTAGN-SRVTRSRFNHQGNKFGIVDGDGDLSLWQASPK 2283 (2439)
T ss_pred             ccCceeeecCCCCCceEEecCCCceEEEEe--ccCCCeEEEeeccCc-chhhhhhhcccCCceeeeccCCceeecccCCc
Confidence            456778888889888999999999999999  677766555554444 88999999999999999999999999988732


Q ss_pred             CCceEEEeeecCCCCceeEEEecCCCCEEEEee---CCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCC
Q psy11529        134 NDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGS---TDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGG  210 (244)
Q Consensus       134 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (244)
                           +......|+....++.|-.  ..+++++   +++.+.+||.-..               ....++.  ..|   .
T Consensus      2284 -----~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~---------------~~~s~v~--~~H---~ 2336 (2439)
T KOG1064|consen 2284 -----PYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLP---------------PMNSLVH--TCH---D 2336 (2439)
T ss_pred             -----ceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccC---------------cccceee--eec---C
Confidence                 3455566777788888875  5666654   4678999997321               1122333  566   8


Q ss_pred             CCeEEEEEecCCCEEEEeeCCCcEEEEeCCC
Q psy11529        211 GWIHSVAFSKDGNKLCWTSHDGSINVRMSQQ  241 (244)
Q Consensus       211 ~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~  241 (244)
                      +.++++++.|..++|++||.+|.|++||++.
T Consensus      2337 ~gaT~l~~~P~~qllisggr~G~v~l~D~rq 2367 (2439)
T KOG1064|consen 2337 GGATVLAYAPKHQLLISGGRKGEVCLFDIRQ 2367 (2439)
T ss_pred             CCceEEEEcCcceEEEecCCcCcEEEeehHH
Confidence            8999999999999999999999999999974

>KOG4714|consensus

Probab=99.23  E-value=3.4e-10  Score=78.66  Aligned_cols=205  Identities=17%  Similarity=0.134  Sum_probs=118.6

Q ss_pred             CCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeC-----CccEEEEeeeCCCCCceee
Q psy11529         20 TRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSA-----DRNAYVWTQNNDDKKWKPT   94 (244)
Q Consensus        20 ~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----d~~i~iwd~~~~~~~~~~~   94 (244)
                      .++.++++..||.+.+++.+..   ++....+..-...-.+.+....++.+.++..     -+..+.|+  ++..+....
T Consensus       100 ~~t~V~~~~~dg~~~v~s~~~~---~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~--~~p~~t~~~  174 (319)
T KOG4714|consen  100 TDNRVCIGYADGSLAVFSTDKD---LALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANT--LDPIKTLIP  174 (319)
T ss_pred             cCCceEecCCCceEEEEechHH---HhhhhhcccccccccccceeecccEEecCCcceEeeccceeeec--ccccccccc
Confidence            4567889999999999997651   1222122111111112222233444444321     23456666  333221111


Q ss_pred             EEEeccCcceEEEEECCCC-CeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecC-CCCEEEEeeCCCeEE
Q psy11529         95 LVLLRINRAATCVKWSPLE-NKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHP-NNHLLGCGSTDFKVR  172 (244)
Q Consensus        95 ~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~l~~~~~dg~i~  172 (244)
                      .  ......|.+++-+|.. +.+++|+.||.+.+||++....   +......|+.++..+.|+| ++..|+++++||.+.
T Consensus       175 ~--~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~---p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw  249 (319)
T KOG4714|consen  175 S--KKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAM---PVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLW  249 (319)
T ss_pred             c--ccccccchhhhCCcccccEEEEecCCCeEEEEEcccccc---hHHHHHHhhhhhhheeccCCCchheeEecCCCcEE
Confidence            1  1123348899999974 5577788899999999998854   5566778999999999999 557899999999999


Q ss_pred             EEEeeecccccCCC---CCCCCccccccc--eeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEe
Q psy11529        173 VFSAYIKDIESAPQ---STNWGSKSTLGN--CLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRM  238 (244)
Q Consensus       173 i~d~~~~~~~~~~~---~~~~~~~~~~~~--~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd  238 (244)
                      .||..+.-+.-..+   ...|-+......  .+..+....  ...|++  |.--|..|++|++-+-|++++
T Consensus       250 ~wdas~~~l~i~~~~s~~s~WLsgD~v~s~i~i~~ll~~~--~~Sins--fDV~g~~lVcgtd~eaIyl~~  316 (319)
T KOG4714|consen  250 HWDASTTFLSISNQASVISSWLSGDPVKSRIEITSLLPSR--SLSINS--FDVLGPCLVCGTDAEAIYLTR  316 (319)
T ss_pred             EEcCCCceEEecCccccccccccCCcccceEeeecccccc--ceeeee--eeccCceEEeccccceEEEec
Confidence            99975322211111   111221111111  111111110  233444  334677899999888888875

>KOG2066|consensus

Probab=99.23  E-value=4.8e-10  Score=89.14  Aligned_cols=187  Identities=12%  Similarity=0.154  Sum_probs=124.5

Q ss_pred             CCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCCC
Q psy11529          9 INPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDD   88 (244)
Q Consensus         9 ~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~   88 (244)
                      .+.++|++++  ++.|+.|+-+|.|++++...     .. .+...|...      ..+|.++++|+.||+|.|-.  +-+
T Consensus        39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~-----~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~s--l~~  102 (846)
T KOG2066|consen   39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQG-----NP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGS--LFT  102 (846)
T ss_pred             hhHHHHHHhh--cceeeeccccceEEEEecCC-----cc-ccccccccc------ccCCceEEEecCCCcEEEee--ccC
Confidence            4556666665  57899999999999999987     33 333335443      66899999999999999998  555


Q ss_pred             CCceeeEEEeccCcceEEEEECCC-----CCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEE
Q psy11529         89 KKWKPTLVLLRINRAATCVKWSPL-----ENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLG  163 (244)
Q Consensus        89 ~~~~~~~~~~~~~~~v~~~~~~~~-----~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~  163 (244)
                      .+....   .....++.+++++|+     .+.+++|+..| +.++.-+--+.  ..........++|.++.|.  |++||
T Consensus       103 ~~~~~~---~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgn--k~~v~l~~~eG~I~~i~W~--g~lIA  174 (846)
T KOG2066|consen  103 DDEITQ---YDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGN--KDSVVLSEGEGPIHSIKWR--GNLIA  174 (846)
T ss_pred             Ccccee---EecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcC--ccceeeecCccceEEEEec--CcEEE
Confidence            543222   345778999999998     56788988888 66654322221  0112344556899999997  78999


Q ss_pred             EeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCC---CCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCC
Q psy11529        164 CGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSS---SGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQ  240 (244)
Q Consensus       164 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~  240 (244)
                      -++++| |++||+                  ...+.+..++..+   .....-..+.|.++.++++ | ...+|+|..++
T Consensus       175 Wand~G-v~vyd~------------------~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVI-G-W~d~v~i~~I~  233 (846)
T KOG2066|consen  175 WANDDG-VKVYDT------------------PTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVI-G-WGDSVKICSIK  233 (846)
T ss_pred             EecCCC-cEEEec------------------cccceeeccCCCCCCCCcccCCCceEecCCCeEEE-e-cCCeEEEEEEe
Confidence            998888 899998                  3344444443321   0022234577876665443 3 23367776665

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.23  E-value=2.6e-10  Score=81.35  Aligned_cols=211  Identities=12%  Similarity=0.198  Sum_probs=135.6

Q ss_pred             CCceEEEEEcCCCC--eEEEecCCCeEEEeeeccC------------------CCcc---e-----------------ee
Q psy11529          9 INPVTTHAWNNTRQ--QLAFTPNNQEVHLYQYEKA------------------ANDW---S-----------------QL   48 (244)
Q Consensus         9 ~~~v~~~~~~~~~~--~l~~~~~d~~v~v~~~~~~------------------~~~~---~-----------------~~   48 (244)
                      ...|..+.|..++.  .++..+.|.+|++|.+...                  ++..   +                 +.
T Consensus        85 eEKin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~  164 (460)
T COG5170          85 EEKINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPC  164 (460)
T ss_pred             HHHhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccc
Confidence            46788888877543  5666778999999987541                  0000   0                 00


Q ss_pred             eee-ccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCCCCCceeeEEEecc-----CcceEEEEECCC-CCeEEEeeC
Q psy11529         49 DVL-DGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRI-----NRAATCVKWSPL-ENKFAAGSG  121 (244)
Q Consensus        49 ~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~-----~~~v~~~~~~~~-~~~l~~~~~  121 (244)
                      +.+ ..|.-.|+++.|+.|.+.++++ +|-+|.+|++...++... ...+..+     ..-|++..|+|. .+.+..++.
T Consensus       165 rvyaNaH~yhiNSiS~NsD~et~lSa-DdLrINLWnl~i~D~sFn-IVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsS  242 (460)
T COG5170         165 RVYANAHPYHINSISFNSDKETLLSA-DDLRINLWNLEIIDGSFN-IVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSS  242 (460)
T ss_pred             eeccccceeEeeeeeecCchheeeec-cceeeeeccccccCCceE-EEeccCccHHHHHHHHhhcccCHhHcceEEEecC
Confidence            011 3577778999999988888776 578999999654444422 2222333     235788999997 567888888


Q ss_pred             CCeEEEEEeecCCCce----E--------EEeeecCCCCceeEEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCC
Q psy11529        122 ARLISVCYFESENDWW----V--------AKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTN  189 (244)
Q Consensus       122 d~~i~i~d~~~~~~~~----~--------~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  189 (244)
                      .|.|++-|++....-.    .        -...+...-..|..+.|+++|+++++- +--+++|||.+.           
T Consensus       243 kG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsR-dyltvkiwDvnm-----------  310 (460)
T COG5170         243 KGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSR-DYLTVKIWDVNM-----------  310 (460)
T ss_pred             CCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEe-ccceEEEEeccc-----------
Confidence            9999999998542200    0        001111223578899999999998874 345899999862           


Q ss_pred             CCccccccceeEEecCCCCC---------CCC---eEEEEEecCCCEEEEeeCCCcEEEEeC
Q psy11529        190 WGSKSTLGNCLVELNNSSSG---------GGW---IHSVAFSKDGNKLCWTSHDGSINVRMS  239 (244)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~---------~~~---v~~~~~s~~~~~l~~~~~dg~i~vwd~  239 (244)
                            ...++.++..|...         ...   -..+.||-|.+.+++|+.....-+|-.
T Consensus       311 ------~k~pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~  366 (460)
T COG5170         311 ------AKNPIKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPT  366 (460)
T ss_pred             ------ccCCceeechHHHHHHHHHhhhhccceeeeEEEEecCCcccccccccccceeeecc
Confidence                  34455555433100         111   235788888888888888777666653

>KOG2315|consensus

Probab=99.21  E-value=5e-09  Score=80.22  Aligned_cols=145  Identities=14%  Similarity=0.216  Sum_probs=101.5

Q ss_pred             EEEEcCCCCe-EEEec--CC---------CeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEE--eCCccE
Q psy11529         14 THAWNNTRQQ-LAFTP--NN---------QEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTC--SADRNA   79 (244)
Q Consensus        14 ~~~~~~~~~~-l~~~~--~d---------~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~~d~~i   79 (244)
                      .+.|++-|.- |+.++  -|         .+++++++++  .  ...-.+. -.++|.++.|+|+++.++.+  -.-..+
T Consensus       222 qm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g--~--s~~V~L~-k~GPVhdv~W~~s~~EF~VvyGfMPAkv  296 (566)
T KOG2315|consen  222 QMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQG--E--SVSVPLL-KEGPVHDVTWSPSGREFAVVYGFMPAKV  296 (566)
T ss_pred             EEEeccCCceEEEEEEEeecCCCccccccceEEEEEecC--c--eEEEecC-CCCCceEEEECCCCCEEEEEEecccceE
Confidence            4678887663 22221  12         4677777775  2  3433444 47999999999999877654  346789


Q ss_pred             EEEeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeC---CCeEEEEEeecCCCceEEEeeecCCCCceeEEEec
Q psy11529         80 YVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSG---ARLISVCYFESENDWWVAKHIKKPIKSTITCLDWH  156 (244)
Q Consensus        80 ~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~  156 (244)
                      .|+|  ++ +.  +.+.+  ..++-+++-|+|.|++++.++-   .|.+-|||..+.+.    .....  ...-+-+.|+
T Consensus       297 tifn--lr-~~--~v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~----i~~~~--a~~tt~~eW~  363 (566)
T KOG2315|consen  297 TIFN--LR-GK--PVFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKL----IAKFK--AANTTVFEWS  363 (566)
T ss_pred             EEEc--CC-CC--EeEeC--CCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhh----ccccc--cCCceEEEEc
Confidence            9999  43 33  23332  4566788999999999888765   57899999998654    22222  2456778999


Q ss_pred             CCCCEEEEeeC------CCeEEEEEe
Q psy11529        157 PNNHLLGCGST------DFKVRVFSA  176 (244)
Q Consensus       157 p~~~~l~~~~~------dg~i~i~d~  176 (244)
                      |||++|+|++.      |+.++||+.
T Consensus       364 PdGe~flTATTaPRlrvdNg~Kiwhy  389 (566)
T KOG2315|consen  364 PDGEYFLTATTAPRLRVDNGIKIWHY  389 (566)
T ss_pred             CCCcEEEEEeccccEEecCCeEEEEe
Confidence            99999999875      577999997

>KOG4714|consensus

Probab=99.21  E-value=1.2e-10  Score=80.85  Aligned_cols=166  Identities=20%  Similarity=0.177  Sum_probs=100.5

Q ss_pred             eeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEee-----CCC
Q psy11529         49 DVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGS-----GAR  123 (244)
Q Consensus        49 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-----~d~  123 (244)
                      ..+..|.++-.+=+.+-.+..++++..||.+.+++  .+. .......+......-.+..+...++.+.++.     .-+
T Consensus        83 ~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s--~~~-~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d  159 (319)
T KOG4714|consen   83 KVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFS--TDK-DLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQD  159 (319)
T ss_pred             eeeeccCCCCCcccccccCCceEecCCCceEEEEe--chH-HHhhhhhcccccccccccceeecccEEecCCcceEeecc
Confidence            33334444333333344467789999999999998  333 1111111111111111222222344444332     123


Q ss_pred             eEEEEEeecCCCceEEEeeecCCCCceeEEEecCCC-CEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEE
Q psy11529        124 LISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNN-HLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVE  202 (244)
Q Consensus       124 ~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (244)
                      ..++|+++..+.   ....... ...|++++-+|.. +.+++|++||.+-+||.|+.                 ..+...
T Consensus       160 ~~~a~~~~p~~t---~~~~~~~-~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~-----------------~~p~S~  218 (319)
T KOG4714|consen  160 NFYANTLDPIKT---LIPSKKA-LDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNV-----------------AMPVSL  218 (319)
T ss_pred             ceeeeccccccc---ccccccc-cccchhhhCCcccccEEEEecCCCeEEEEEcccc-----------------cchHHH
Confidence            355666655443   1111122 2349999999954 57788899999999999632                 334555


Q ss_pred             ecCCCCCCCCeEEEEEec-CCCEEEEeeCCCcEEEEeCCC
Q psy11529        203 LNNSSSGGGWIHSVAFSK-DGNKLCWTSHDGSINVRMSQQ  241 (244)
Q Consensus       203 ~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vwd~~~  241 (244)
                      +..|   ...++.+-|+| ++..|+++++||++.-||..+
T Consensus       219 l~ah---k~~i~eV~FHpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  219 LKAH---KAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             HHHh---hhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence            6777   89999999999 777999999999999999873

>KOG1832|consensus

Probab=99.19  E-value=1.6e-11  Score=98.60  Aligned_cols=192  Identities=14%  Similarity=0.097  Sum_probs=132.6

Q ss_pred             CCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeC--CccEEEEeee
Q psy11529          8 GINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSA--DRNAYVWTQN   85 (244)
Q Consensus         8 ~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~iwd~~   85 (244)
                      +...-+|++|+.+.++|++|+..|.|++|++..  +  .......+|..+|+-+.-+.+|..+++.+.  ..-..+|++ 
T Consensus      1100 ~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~s--G--~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~- 1174 (1516)
T KOG1832|consen 1100 ETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSS--G--SMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDA- 1174 (1516)
T ss_pred             cccceeeEEeecCCceEEeeeccceEEEEEccC--c--cccccccccccccccccccCCcceeeeeccccCchHHHhcc-
Confidence            367889999999999999999999999999987  5  667788999999999999999987776544  235679994 


Q ss_pred             CCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEe
Q psy11529         86 NDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCG  165 (244)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~  165 (244)
                      -..+..  ...    -....++.|+.....-+.|+......+||+.+.........-.......-+.+.|+|+..+++  
T Consensus      1175 ~s~~~~--~Hs----f~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl-- 1246 (1516)
T KOG1832|consen 1175 SSTGGP--RHS----FDEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL-- 1246 (1516)
T ss_pred             ccccCc--ccc----ccccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe--
Confidence            122222  111    234567888877555566666677889999998762221111122223347889999988775  


Q ss_pred             eCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCCC
Q psy11529        166 STDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQV  242 (244)
Q Consensus       166 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~  242 (244)
                       .||  .+||+|.                  .+.++.|..-   . .--.-.|+|.|.-++..+.     |||+++|
T Consensus      1247 -ndG--vLWDvR~------------------~~aIh~FD~f---t-~~~~G~FHP~g~eVIINSE-----IwD~RTF 1293 (1516)
T KOG1832|consen 1247 -NDG--VLWDVRI------------------PEAIHRFDQF---T-DYGGGGFHPSGNEVIINSE-----IWDMRTF 1293 (1516)
T ss_pred             -eCc--eeeeecc------------------HHHHhhhhhh---e-ecccccccCCCceEEeech-----hhhhHHH
Confidence             566  5799953                  3444444321   1 1123368888887777663     8888876

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=99.18  E-value=1.4e-08  Score=78.63  Aligned_cols=117  Identities=15%  Similarity=0.255  Sum_probs=82.5

Q ss_pred             CceEEEEeCC-CCCeEEEE----eCCcc----EEEEeeeCCCCCcee-eEEEeccCcceEEEEECCCCCeEEEeeCCCeE
Q psy11529         56 LKVTGIDWAP-NTNRIVTC----SADRN----AYVWTQNNDDKKWKP-TLVLLRINRAATCVKWSPLENKFAAGSGARLI  125 (244)
Q Consensus        56 ~~v~~~~~~~-~~~~l~~~----~~d~~----i~iwd~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i  125 (244)
                      ....++.||. ++..+.+.    +.+|.    ..+|++  ..++... .......++.+.+++++|+...++.|+.||.|
T Consensus       206 ~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~--~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSi  283 (545)
T PF11768_consen  206 NDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYEC--SRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSI  283 (545)
T ss_pred             CCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEe--ecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeE
Confidence            3346777876 44445443    23343    346773  3333222 22234567899999999999999999999999


Q ss_pred             EEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEeeCCCeEEEEEeeecc
Q psy11529        126 SVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKD  180 (244)
Q Consensus       126 ~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~  180 (244)
                      .+||...+..    ..  ....-.++.++|+|+|..+++|+..|.+.+||+....
T Consensus       284 iLyD~~~~~t----~~--~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALsp  332 (545)
T PF11768_consen  284 ILYDTTRGVT----LL--AKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSP  332 (545)
T ss_pred             EEEEcCCCee----ee--eeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCc
Confidence            9999877643    11  1223567899999999999999999999999996443

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.18  E-value=1.8e-08  Score=76.47  Aligned_cols=197  Identities=14%  Similarity=0.134  Sum_probs=130.0

Q ss_pred             eCCCceEEEEEcCCCC--eEEE-----ecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEe-----
Q psy11529          7 FGINPVTTHAWNNTRQ--QLAF-----TPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCS-----   74 (244)
Q Consensus         7 ~~~~~v~~~~~~~~~~--~l~~-----~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-----   74 (244)
                      +....|....|+|.++  .||+     .+....+++|.+..  +......++.  +..=..+.|.+.|++|+.--     
T Consensus       171 lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~--~s~l~tk~lf--k~~~~qLkW~~~g~~ll~l~~t~~k  246 (561)
T COG5354         171 LRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPK--NSVLVTKNLF--KVSGVQLKWQVLGKYLLVLVMTHTK  246 (561)
T ss_pred             ccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccC--CCeeeeeeeE--eecccEEEEecCCceEEEEEEEeee
Confidence            3357889999999644  3443     25578899999875  4223333333  22234688999998765321     


Q ss_pred             ------CCccEEEEeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEee--CCCeEEEEEeecCCCceEEEeeecCC
Q psy11529         75 ------ADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGS--GARLISVCYFESENDWWVAKHIKKPI  146 (244)
Q Consensus        75 ------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~  146 (244)
                            ....++|++  +....+. ..  ....+.|...+|.|.++.+++.+  .+..+.++|++..-     ....  .
T Consensus       247 snKsyfgesnLyl~~--~~e~~i~-V~--~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~Nl-----~~~~--P  314 (561)
T COG5354         247 SNKSYFGESNLYLLR--ITERSIP-VE--KDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGNL-----RFYF--P  314 (561)
T ss_pred             cccceeccceEEEEe--ecccccc-ee--ccccccceeeeecccCCceeEEecccccceeecccccce-----EEec--C
Confidence                  134677888  4433211 11  14578999999999988877765  57889999988762     2222  2


Q ss_pred             CCceeEEEecCCCCEEEEeeCC---CeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCC
Q psy11529        147 KSTITCLDWHPNNHLLGCGSTD---FKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGN  223 (244)
Q Consensus       147 ~~~v~~~~~~p~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  223 (244)
                      ...-+.+.|+|.++++++++-+   |.+-+||..                 ....++..+.+     ...+-+.|+||++
T Consensus       315 e~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~-----------------~rf~~~~~~~~-----~n~s~~~wspd~q  372 (561)
T COG5354         315 EQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPA-----------------GRFKVAGAFNG-----LNTSYCDWSPDGQ  372 (561)
T ss_pred             CcccccccccCcccEEEEecCCccccceEEeccC-----------------CceEEEEEeec-----CCceEeeccCCce
Confidence            2455778999999999987654   689999972                 11223334543     3456678999999


Q ss_pred             EEEEeeC------CCcEEEEeCCC
Q psy11529        224 KLCWTSH------DGSINVRMSQQ  241 (244)
Q Consensus       224 ~l~~~~~------dg~i~vwd~~~  241 (244)
                      ++.+...      |..|.|||+..
T Consensus       373 F~~~~~ts~k~~~Dn~i~l~~v~g  396 (561)
T COG5354         373 FYDTDTTSEKLRVDNSIKLWDVYG  396 (561)
T ss_pred             EEEecCCCcccccCcceEEEEecC
Confidence            8876543      77899999853

>KOG0882|consensus

Probab=99.18  E-value=5e-10  Score=83.55  Aligned_cols=226  Identities=11%  Similarity=-0.014  Sum_probs=154.2

Q ss_pred             eeEEeCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeC-CccEEE
Q psy11529          3 EVYSFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSA-DRNAYV   81 (244)
Q Consensus         3 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~i   81 (244)
                      |..-.|.+.|+.+..+ -.+++.+++.||.++.|--..-.+ .+-+..+..|-..|.+++.+-++..+.+.+. |..+++
T Consensus         3 eksymhrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isG-vEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~Kv   80 (558)
T KOG0882|consen    3 EKSYMHRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISG-VEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKV   80 (558)
T ss_pred             chhhcccceeeeEeee-hhheEEeeecchhhhhcCCCCccc-eeehhhhHHHHHHHHhhhccccceeEeeccCcccceeE
Confidence            3334577888877654 356899999999999998644111 2456667789999999999999999999877 999999


Q ss_pred             EeeeCCCCCceeeEEEeccCcceEEEEECCCC--CeEEEe-eCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCC
Q psy11529         82 WTQNNDDKKWKPTLVLLRINRAATCVKWSPLE--NKFAAG-SGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPN  158 (244)
Q Consensus        82 wd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~  158 (244)
                      +|  +++-.....+.+...++.+.. ..+|..  ..++++ -.++.+.++|-.....  .......-|..+|..+.++|.
T Consensus        81 fD--vEn~DminmiKL~~lPg~a~w-v~skGd~~s~IAVs~~~sg~i~VvD~~~d~~--q~~~fkklH~sPV~~i~y~qa  155 (558)
T KOG0882|consen   81 FD--VENFDMINMIKLVDLPGFAEW-VTSKGDKISLIAVSLFKSGKIFVVDGFGDFC--QDGYFKKLHFSPVKKIRYNQA  155 (558)
T ss_pred             EE--eeccchhhhcccccCCCceEE-ecCCCCeeeeEEeecccCCCcEEECCcCCcC--ccceecccccCceEEEEeecc
Confidence            99  566554433333333333322 223321  134443 3478888988766543  233444567789999999999


Q ss_pred             CCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEe
Q psy11529        159 NHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRM  238 (244)
Q Consensus       159 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd  238 (244)
                      +..+++....|.|.-|.... .+..+.....+.-  +....+..+...   .....++.|+|+|..+.+-+.|..|++++
T Consensus       156 ~Ds~vSiD~~gmVEyWs~e~-~~qfPr~~l~~~~--K~eTdLy~f~K~---Kt~pts~Efsp~g~qistl~~DrkVR~F~  229 (558)
T KOG0882|consen  156 GDSAVSIDISGMVEYWSAEG-PFQFPRTNLNFEL--KHETDLYGFPKA---KTEPTSFEFSPDGAQISTLNPDRKVRGFV  229 (558)
T ss_pred             ccceeeccccceeEeecCCC-cccCccccccccc--cccchhhccccc---ccCccceEEccccCcccccCcccEEEEEE
Confidence            99999999999999999742 1211111111221  222233334433   67788999999999999999999999998


Q ss_pred             CCC
Q psy11529        239 SQQ  241 (244)
Q Consensus       239 ~~~  241 (244)
                      +++
T Consensus       230 ~Kt  232 (558)
T KOG0882|consen  230 FKT  232 (558)
T ss_pred             ecc
Confidence            875

>KOG2695|consensus

Probab=99.18  E-value=1.5e-10  Score=83.56  Aligned_cols=156  Identities=8%  Similarity=0.041  Sum_probs=110.5

Q ss_pred             EEeCC--CCCeEEEEeCCccEEEEeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceE
Q psy11529         61 IDWAP--NTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWV  138 (244)
Q Consensus        61 ~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~  138 (244)
                      ++|+-  .+.. ++.+.+..+-+-|  ++++..   .. ....+.|.++.|...++++..|+..|.|..+|++...+-..
T Consensus       217 CawSlni~gyh-fs~G~sqqv~L~n--vetg~~---qs-f~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~  289 (425)
T KOG2695|consen  217 CAWSLNIMGYH-FSVGLSQQVLLTN--VETGHQ---QS-FQSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNG  289 (425)
T ss_pred             hhhhhccceee-ecccccceeEEEE--eecccc---cc-cccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCC
Confidence            35654  2334 4555677788888  677652   22 23578899999999899999999999999999998733111


Q ss_pred             EEeeecCCCCceeEEEecC-CCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeE--E
Q psy11529        139 AKHIKKPIKSTITCLDWHP-NNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIH--S  215 (244)
Q Consensus       139 ~~~~~~~~~~~v~~~~~~p-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~  215 (244)
                      -......|.+.|+++..-. ++++|++.+.+|+|++||+|.-               +.++-+..+.+|   -..-.  -
T Consensus       290 ~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~---------------K~~~~V~qYeGH---vN~~a~l~  351 (425)
T KOG2695|consen  290 WCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRAT---------------KCKKSVMQYEGH---VNLSAYLP  351 (425)
T ss_pred             cceEEEEcCcchhhhhhhccccceEeeccCcCceeEeeehhh---------------hcccceeeeecc---cccccccc
Confidence            2233344678899888776 7789999999999999999521               122337888887   22222  2


Q ss_pred             EEEecCCCEEEEeeCCCcEEEEeCCC
Q psy11529        216 VAFSKDGNKLCWTSHDGSINVRMSQQ  241 (244)
Q Consensus       216 ~~~s~~~~~l~~~~~dg~i~vwd~~~  241 (244)
                      +-..+....+++++.|...+||.++.
T Consensus       352 ~~v~~eeg~I~s~GdDcytRiWsl~~  377 (425)
T KOG2695|consen  352 AHVKEEEGSIFSVGDDCYTRIWSLDS  377 (425)
T ss_pred             cccccccceEEEccCeeEEEEEeccc
Confidence            33445666888999999999999983

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.18  E-value=5.7e-08  Score=83.70  Aligned_cols=216  Identities=11%  Similarity=0.032  Sum_probs=124.3

Q ss_pred             EEEEEcCC-CCeEEEecCCCeEEEeeeccCCCcceeeeeecc--------------CCCceEEEEeCCCCCeEEEEe-CC
Q psy11529         13 TTHAWNNT-RQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDG--------------HDLKVTGIDWAPNTNRIVTCS-AD   76 (244)
Q Consensus        13 ~~~~~~~~-~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~--------------~~~~v~~~~~~~~~~~l~~~~-~d   76 (244)
                      ..++++++ ++.+++-..++.|+++|..+     ..+..+.+              .-.....+++++++..|+.+. ..
T Consensus       571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G-----~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n  645 (1057)
T PLN02919        571 GKLAIDLLNNRLFISDSNHNRIVVTDLDG-----NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTEN  645 (1057)
T ss_pred             ceEEEECCCCeEEEEECCCCeEEEEeCCC-----CEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCC
Confidence            35788875 55666667788999999876     33322221              112347889999888666554 35


Q ss_pred             ccEEEEeeeCCCCCceeeEEEecc---------------CcceEEEEECCC-CCeEEEeeCCCeEEEEEeecCCCceEEE
Q psy11529         77 RNAYVWTQNNDDKKWKPTLVLLRI---------------NRAATCVKWSPL-ENKFAAGSGARLISVCYFESENDWWVAK  140 (244)
Q Consensus        77 ~~i~iwd~~~~~~~~~~~~~~~~~---------------~~~v~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~  140 (244)
                      +.|+++|  ..++... .+...+.               -.....++++|+ +..+++...++.|++||...+.......
T Consensus       646 ~~Ir~id--~~~~~V~-tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G  722 (1057)
T PLN02919        646 HALREID--FVNETVR-TLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSG  722 (1057)
T ss_pred             ceEEEEe--cCCCEEE-EEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEec
Confidence            6789998  5554321 1110000               123468999994 5566666778899999987653200000


Q ss_pred             ----eeec------CCCCceeEEEecCCCCE-EEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCC--
Q psy11529        141 ----HIKK------PIKSTITCLDWHPNNHL-LGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSS--  207 (244)
Q Consensus       141 ----~~~~------~~~~~v~~~~~~p~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  207 (244)
                          ....      ..-.....++++|+++. +++-+.+++|++||+.............     ........+-...  
T Consensus       723 ~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~-----~~~~~l~~fG~~dG~  797 (1057)
T PLN02919        723 DGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDP-----TFSDNLFKFGDHDGV  797 (1057)
T ss_pred             CCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEeccc-----ccCcccccccCCCCc
Confidence                0000      01134567999999984 4455567899999985432110000000     0000000000000  


Q ss_pred             ---CCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCC
Q psy11529        208 ---SGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQ  241 (244)
Q Consensus       208 ---~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~  241 (244)
                         ........++++++|.++++-+.++.|++||..+
T Consensus       798 g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~t  834 (1057)
T PLN02919        798 GSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPAT  834 (1057)
T ss_pred             hhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCC
Confidence               0012346899999999888888899999999864

>KOG4190|consensus

Probab=99.16  E-value=2.1e-10  Score=87.99  Aligned_cols=174  Identities=16%  Similarity=0.168  Sum_probs=119.5

Q ss_pred             eeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCCCCC---ceeeEEEeccCcceEEEEECCCCCeEEEeeCCC
Q psy11529         47 QLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKK---WKPTLVLLRINRAATCVKWSPLENKFAAGSGAR  123 (244)
Q Consensus        47 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~  123 (244)
                      .+..+.+|...|..++--.+.+.+++++.|.+|++|.++.+...   ..+.++...|+.+|.++.|-.+-++++++  |+
T Consensus       727 rL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~  804 (1034)
T KOG4190|consen  727 RLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DG  804 (1034)
T ss_pred             eeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cC
Confidence            34567889999988876667778999999999999996433222   22456667899999999999887777764  78


Q ss_pred             eEEEEEeecCCCceEEEeeecCCCCceeEEEecC--CCCE-EEEeeCCCeEEEEEeeecccccCCCCCCCCcccccccee
Q psy11529        124 LISVCYFESENDWWVAKHIKKPIKSTITCLDWHP--NNHL-LGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCL  200 (244)
Q Consensus       124 ~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p--~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  200 (244)
                      .+.+||.-.+....  .....+..+.+..+.--|  +... ++.++...+++++|.|..                  +..
T Consensus       805 giHlWDPFigr~La--q~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsc------------------e~~  864 (1034)
T KOG4190|consen  805 GIHLWDPFIGRLLA--QMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSC------------------EWT  864 (1034)
T ss_pred             cceeecccccchhH--hhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccc------------------cce
Confidence            89999976665411  111112223333333333  3334 444477899999999543                  333


Q ss_pred             EEecCCC--CCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCCC
Q psy11529        201 VELNNSS--SGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQV  242 (244)
Q Consensus       201 ~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~  242 (244)
                      .+++...  .+...+++++..+.|++++.+-..|.|.+.|.++-
T Consensus       865 ~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G  908 (1034)
T KOG4190|consen  865 CELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNG  908 (1034)
T ss_pred             eeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCC
Confidence            3332210  01567899999999999999999999999998764

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=99.15  E-value=2.8e-10  Score=57.36  Aligned_cols=39  Identities=38%  Similarity=0.569  Sum_probs=36.3

Q ss_pred             cceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEe
Q psy11529        197 GNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRM  238 (244)
Q Consensus       197 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd  238 (244)
                      ++++..+.+|   ...|++++|+|++.+|++++.|+.|++||
T Consensus         1 g~~~~~~~~h---~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGH---SSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESS---SSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcCC---CCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            3577889999   99999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG1920|consensus

Probab=99.14  E-value=2.2e-08  Score=83.34  Aligned_cols=206  Identities=13%  Similarity=0.237  Sum_probs=135.5

Q ss_pred             CCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCC-
Q psy11529          9 INPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNND-   87 (244)
Q Consensus         9 ~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-   87 (244)
                      .+.|.++.|..++..++.+...|.|.+-|.++  .   .......-...|.+++|+||++.++..+..+++.+-+-+.. 
T Consensus        68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et--~---~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~  142 (1265)
T KOG1920|consen   68 DDEIVSVQFLADTNSICVITALGDIILVDPET--L---ELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEP  142 (1265)
T ss_pred             CcceEEEEEecccceEEEEecCCcEEEEcccc--c---ceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccc
Confidence            36899999999999999999999999998877  3   33333334678999999999999998888777776541100 


Q ss_pred             -CCCce-----------------eeEEEec---------------------cCcceEEEEECCCCCeEEEe-----eCCC
Q psy11529         88 -DKKWK-----------------PTLVLLR---------------------INRAATCVKWSPLENKFAAG-----SGAR  123 (244)
Q Consensus        88 -~~~~~-----------------~~~~~~~---------------------~~~~v~~~~~~~~~~~l~~~-----~~d~  123 (244)
                       ..+..                 ....+.+                     ..+.=..|.|--||.++|+.     .+..
T Consensus       143 i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~R  222 (1265)
T KOG1920|consen  143 IAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTR  222 (1265)
T ss_pred             hhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCce
Confidence             00000                 0001110                     11122358999999999983     3337


Q ss_pred             eEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEee---CCCeEEEEEeeecccccCCCCCCCCcccccccee
Q psy11529        124 LISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGS---TDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCL  200 (244)
Q Consensus       124 ~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  200 (244)
                      .+++||-+ +.    ......+..+.-.+++|-|.|.++++--   +|+.|.+|.-+.-               ..+...
T Consensus       223 kirV~drE-g~----Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL---------------~hg~f~  282 (1265)
T KOG1920|consen  223 KIRVYDRE-GA----LNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGL---------------RHGEFV  282 (1265)
T ss_pred             eEEEeccc-ch----hhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCc---------------cccccc
Confidence            89999977 32    2333344445667899999999988753   4567888874210               112222


Q ss_pred             EEecCCCCCCCCeEEEEEecCCCEEEE---eeCCCcEEEEeCCCC
Q psy11529        201 VELNNSSSGGGWIHSVAFSKDGNKLCW---TSHDGSINVRMSQQV  242 (244)
Q Consensus       201 ~~~~~~~~~~~~v~~~~~s~~~~~l~~---~~~dg~i~vwd~~~~  242 (244)
                      ..++..   ...+..++|+.++..|+.   ......|++|-+.+.
T Consensus       283 l~~p~d---e~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Ny  324 (1265)
T KOG1920|consen  283 LPFPLD---EKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNY  324 (1265)
T ss_pred             cCCccc---ccchheeeecCCCCceeeeecccccceEEEEEecCe
Confidence            223332   344999999999999887   444445999987763

>KOG2695|consensus

Probab=99.14  E-value=7.6e-10  Score=79.97  Aligned_cols=180  Identities=14%  Similarity=0.084  Sum_probs=122.4

Q ss_pred             EEEEcCC--CCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCCC-CC
Q psy11529         14 THAWNNT--RQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDD-KK   90 (244)
Q Consensus        14 ~~~~~~~--~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-~~   90 (244)
                      .++|+-+  |-.+++ +.+-.|-+-++++     ...+.+. .++.|.++.|...+++++.|+..|.|..+|++-+. |.
T Consensus       216 ~CawSlni~gyhfs~-G~sqqv~L~nvet-----g~~qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~  288 (425)
T KOG2695|consen  216 SCAWSLNIMGYHFSV-GLSQQVLLTNVET-----GHQQSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGN  288 (425)
T ss_pred             hhhhhhccceeeecc-cccceeEEEEeec-----ccccccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCC
Confidence            3466643  334334 4567788888887     4445555 67889999999989999999999999999964321 11


Q ss_pred             ceeeEEEeccCcceEEEEECC-CCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCC--ceeEEEecCCCCEEEEeeC
Q psy11529         91 WKPTLVLLRINRAATCVKWSP-LENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKS--TITCLDWHPNNHLLGCGST  167 (244)
Q Consensus        91 ~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~--~v~~~~~~p~~~~l~~~~~  167 (244)
                      .- .....-|.+.|+++..-. ++.+|++.+.+|+|++||.+..+... ......+|-.  ...-+...+....++++++
T Consensus       289 ~~-~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~-~V~qYeGHvN~~a~l~~~v~~eeg~I~s~Gd  366 (425)
T KOG2695|consen  289 GW-CAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKK-SVMQYEGHVNLSAYLPAHVKEEEGSIFSVGD  366 (425)
T ss_pred             Cc-ceEEEEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhccc-ceeeeecccccccccccccccccceEEEccC
Confidence            11 222245889999988877 78899999999999999999876522 2233344432  2233445566678888999


Q ss_pred             CCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCC-CCCCeEEEEEec
Q psy11529        168 DFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSS-GGGWIHSVAFSK  220 (244)
Q Consensus       168 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~  220 (244)
                      |.-.+||.+                  ..+.++.+++.... ....+.+++|..
T Consensus       367 DcytRiWsl------------------~~ghLl~tipf~~s~~e~d~~sv~~~s  402 (425)
T KOG2695|consen  367 DCYTRIWSL------------------DSGHLLCTIPFPYSASEVDIPSVAFDS  402 (425)
T ss_pred             eeEEEEEec------------------ccCceeeccCCCCccccccccceehhc
Confidence            999999999                  66777777665311 022455566643

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=99.14  E-value=6e-08  Score=70.59  Aligned_cols=187  Identities=12%  Similarity=0.057  Sum_probs=122.5

Q ss_pred             EEEcCCCCeEEEec-----CCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEe---------------
Q psy11529         15 HAWNNTRQQLAFTP-----NNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCS---------------   74 (244)
Q Consensus        15 ~~~~~~~~~l~~~~-----~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---------------   74 (244)
                      -.||+||++|++.-     ..|.|-|||...   .++.+.++..|.-.-..+.+.|||+.|+.+.               
T Consensus        56 g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~---~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLN  132 (305)
T PF07433_consen   56 GVFSPDGRLLYTTENDYETGRGVIGVYDAAR---GYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLN  132 (305)
T ss_pred             EEEcCCCCEEEEeccccCCCcEEEEEEECcC---CcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecC
Confidence            46899999998863     358999999984   2478888888776677888999998777663               


Q ss_pred             ---CCccEEEEeeeCCCCCceeeEEE--eccCcceEEEEECCCCCeEEEeeCCCe-----EEEEEeecCCCceEEE---e
Q psy11529         75 ---ADRNAYVWTQNNDDKKWKPTLVL--LRINRAATCVKWSPLENKFAAGSGARL-----ISVCYFESENDWWVAK---H  141 (244)
Q Consensus        75 ---~d~~i~iwd~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d~~-----i~i~d~~~~~~~~~~~---~  141 (244)
                         .+..+...|  ..+++......+  ..|...++.+++.++|..++..-..+.     -.+.-.+.++......   .
T Consensus       133 l~tM~psL~~ld--~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~  210 (305)
T PF07433_consen  133 LDTMQPSLVYLD--ARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEE  210 (305)
T ss_pred             hhhcCCceEEEe--cCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChH
Confidence               123455556  677776655555  346778999999999876655433221     1122223332200110   0


Q ss_pred             eecCCCCceeEEEecCCCCEEEEee-CCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEec
Q psy11529        142 IKKPIKSTITCLDWHPNNHLLGCGS-TDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSK  220 (244)
Q Consensus       142 ~~~~~~~~v~~~~~~p~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  220 (244)
                      ......+.+-+|++++++.++++.+ .-+.+.+||.                  .+++.+.....     ..+..++-.+
T Consensus       211 ~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~------------------~tg~~~~~~~l-----~D~cGva~~~  267 (305)
T PF07433_consen  211 QWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDA------------------ATGRLLGSVPL-----PDACGVAPTD  267 (305)
T ss_pred             HHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEEC------------------CCCCEeecccc-----CceeeeeecC
Confidence            1122357889999999998776555 5678999998                  66777765543     3456666666


Q ss_pred             CCCEEEEeeC
Q psy11529        221 DGNKLCWTSH  230 (244)
Q Consensus       221 ~~~~l~~~~~  230 (244)
                      ++ ++++.+.
T Consensus       268 ~~-f~~ssG~  276 (305)
T PF07433_consen  268 DG-FLVSSGQ  276 (305)
T ss_pred             Cc-eEEeCCC
Confidence            66 5665543

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=99.13  E-value=3.3e-10  Score=57.09  Aligned_cols=38  Identities=26%  Similarity=0.608  Sum_probs=36.4

Q ss_pred             eeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEe
Q psy11529         46 SQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWT   83 (244)
Q Consensus        46 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd   83 (244)
                      +++.++.+|...|++++|+|++.+|++++.|+.|++||
T Consensus         2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            67889999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG2114|consensus

Probab=99.12  E-value=2.8e-08  Score=80.06  Aligned_cols=201  Identities=13%  Similarity=0.060  Sum_probs=130.5

Q ss_pred             EEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCc-eEEEEeCCCCCeEEEEeCCc-----cEEEEeeeCCCC
Q psy11529         16 AWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLK-VTGIDWAPNTNRIVTCSADR-----NAYVWTQNNDDK   89 (244)
Q Consensus        16 ~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~~d~-----~i~iwd~~~~~~   89 (244)
                      +|++.+..++.|+.+|.|.+++-.-     +....++.++.. |..+....+..+|++.+.|+     .+++|++....+
T Consensus        30 c~~s~~~~vvigt~~G~V~~Ln~s~-----~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~  104 (933)
T KOG2114|consen   30 CCSSSTGSVVIGTADGRVVILNSSF-----QLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDK  104 (933)
T ss_pred             EEcCCCceEEEeeccccEEEecccc-----eeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCC
Confidence            4778889999999999999888655     666778777776 44444343446777776654     589999532212


Q ss_pred             C--ceee--EEEec-----cCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCC
Q psy11529         90 K--WKPT--LVLLR-----INRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNH  160 (244)
Q Consensus        90 ~--~~~~--~~~~~-----~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~  160 (244)
                      .  ....  .....     .+.++.+++.+.+-+.+++|-.+|.|..+.=+-.+............+.+|+.+.+..+++
T Consensus       105 n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~  184 (933)
T KOG2114|consen  105 NNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGK  184 (933)
T ss_pred             CCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCc
Confidence            1  1111  12222     3567889999999999999999999988653322221122334445568999999999988


Q ss_pred             EEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCC
Q psy11529        161 LLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQ  240 (244)
Q Consensus       161 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~  240 (244)
                      .++.......|.+|.+..                ++ .....+..|   +.++.|..+++....+++++ +.-+.+|+..
T Consensus       185 s~lFv~Tt~~V~~y~l~g----------------r~-p~~~~ld~~---G~~lnCss~~~~t~qfIca~-~e~l~fY~sd  243 (933)
T KOG2114|consen  185 SVLFVATTEQVMLYSLSG----------------RT-PSLKVLDNN---GISLNCSSFSDGTYQFICAG-SEFLYFYDSD  243 (933)
T ss_pred             eeEEEEecceeEEEEecC----------------CC-cceeeeccC---CccceeeecCCCCccEEEec-CceEEEEcCC
Confidence            633333456789999831                11 123445555   78888888887555344443 3467788766


Q ss_pred             CC
Q psy11529        241 QV  242 (244)
Q Consensus       241 ~~  242 (244)
                      ..
T Consensus       244 ~~  245 (933)
T KOG2114|consen  244 GR  245 (933)
T ss_pred             Cc
Confidence            54

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=99.03  E-value=1.6e-06  Score=63.38  Aligned_cols=204  Identities=13%  Similarity=0.055  Sum_probs=123.6

Q ss_pred             CceEEEEEcC-CCCeEEEecCCC-eEEEeeeccCCCcceeeeeeccCCCce--EEEEeCCCCCeEEEEeC-----CccEE
Q psy11529         10 NPVTTHAWNN-TRQQLAFTPNNQ-EVHLYQYEKAANDWSQLDVLDGHDLKV--TGIDWAPNTNRIVTCSA-----DRNAY   80 (244)
Q Consensus        10 ~~v~~~~~~~-~~~~l~~~~~d~-~v~v~~~~~~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~l~~~~~-----d~~i~   80 (244)
                      .....++.+| .+..++++-.-| ...+||..+  +  +....+....+.-  -.-.||+||++|++.-.     .|.|-
T Consensus         5 ~RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~--g--~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~Ig   80 (305)
T PF07433_consen    5 ARGHGVAAHPTRPEAVAFARRPGTFALVFDCRT--G--QLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIG   80 (305)
T ss_pred             ccccceeeCCCCCeEEEEEeCCCcEEEEEEcCC--C--ceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEE
Confidence            4456788999 555666665544 577888876  4  3443443222221  13679999999998743     58899


Q ss_pred             EEeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeC-------CCe-----------EEEEEeecCCCceEEEee
Q psy11529         81 VWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSG-------ARL-----------ISVCYFESENDWWVAKHI  142 (244)
Q Consensus        81 iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-------d~~-----------i~i~d~~~~~~~~~~~~~  142 (244)
                      |||  .. ..+...-++..+.-....+.+.|||+.|+++..       .|.           +...|..+++.  ..+..
T Consensus        81 Vyd--~~-~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~l--l~q~~  155 (305)
T PF07433_consen   81 VYD--AA-RGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGAL--LEQVE  155 (305)
T ss_pred             EEE--Cc-CCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCce--eeeee
Confidence            999  55 344445555555556778899999988887643       122           33444444443  11111


Q ss_pred             e--cCCCCceeEEEecCCCCEEEEeeCCC-------eEEEEEeeecccccCCCCCCCCccccccceeEEecCCC----CC
Q psy11529        143 K--KPIKSTITCLDWHPNNHLLGCGSTDF-------KVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSS----SG  209 (244)
Q Consensus       143 ~--~~~~~~v~~~~~~p~~~~l~~~~~dg-------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~  209 (244)
                      .  .-|.-.+..+++.++|..++..-..|       .+.+++.                    ++.+..+....    .-
T Consensus       156 Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~--------------------g~~~~~~~~p~~~~~~l  215 (305)
T PF07433_consen  156 LPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRR--------------------GGALRLLPAPEEQWRRL  215 (305)
T ss_pred             cCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcC--------------------CCcceeccCChHHHHhh
Confidence            2  23556788999999886655544333       2333332                    22222222110    01


Q ss_pred             CCCeEEEEEecCCCEEEEee-CCCcEEEEeCCCC
Q psy11529        210 GGWIHSVAFSKDGNKLCWTS-HDGSINVRMSQQV  242 (244)
Q Consensus       210 ~~~v~~~~~s~~~~~l~~~~-~dg~i~vwd~~~~  242 (244)
                      .+.+-++++++++.++++.+ .-+.+.+||..+-
T Consensus       216 ~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg  249 (305)
T PF07433_consen  216 NGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATG  249 (305)
T ss_pred             CCceEEEEEeCCCCEEEEECCCCCEEEEEECCCC
Confidence            56789999999998776555 6778999988753

>KOG2041|consensus

Probab=99.03  E-value=2.1e-09  Score=84.91  Aligned_cols=163  Identities=19%  Similarity=0.219  Sum_probs=121.0

Q ss_pred             CCceEEEEeCCCCCeEEEEeCCccEEEEeeeCCCCC-----------ceeeEEEeccCcceEEEEECCCCCeEEEeeCCC
Q psy11529         55 DLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKK-----------WKPTLVLLRINRAATCVKWSPLENKFAAGSGAR  123 (244)
Q Consensus        55 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~-----------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~  123 (244)
                      .....+++|+.+..+++.|+.||.+++..++..+..           ......+.+|...|.-+.|+.+.+.|.++..+|
T Consensus        14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~G   93 (1189)
T KOG2041|consen   14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSG   93 (1189)
T ss_pred             CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCc
Confidence            456789999999999999999999999984322111           111234568999999999999999999999999


Q ss_pred             eEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEe
Q psy11529        124 LISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVEL  203 (244)
Q Consensus       124 ~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (244)
                      .|.+|-+-.+.=  .........++.|.+++|+.||..|...-.||.|.+=.+.                   |..+..-
T Consensus        94 lIiVWmlykgsW--~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvd-------------------GNRIwgK  152 (1189)
T KOG2041|consen   94 LIIVWMLYKGSW--CEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVD-------------------GNRIWGK  152 (1189)
T ss_pred             eEEEEeeecccH--HHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeec-------------------cceecch
Confidence            999999876641  1112223345789999999999999999999988776652                   2222211


Q ss_pred             cCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCC
Q psy11529        204 NNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQ  241 (244)
Q Consensus       204 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~  241 (244)
                      ...   ......+.|++|.+.++.+-..|.+.++|.+.
T Consensus       153 eLk---g~~l~hv~ws~D~~~~Lf~~ange~hlydnqg  187 (1189)
T KOG2041|consen  153 ELK---GQLLAHVLWSEDLEQALFKKANGETHLYDNQG  187 (1189)
T ss_pred             hcc---hheccceeecccHHHHHhhhcCCcEEEecccc
Confidence            111   33456789999999988888899999998764

>KOG1008|consensus

Probab=99.02  E-value=9.7e-11  Score=90.92  Aligned_cols=206  Identities=14%  Similarity=0.150  Sum_probs=133.2

Q ss_pred             CCceEEEEEcCCCC--eEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCC-CCCeEEEEeC----CccEEE
Q psy11529          9 INPVTTHAWNNTRQ--QLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAP-NTNRIVTCSA----DRNAYV   81 (244)
Q Consensus         9 ~~~v~~~~~~~~~~--~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~----d~~i~i   81 (244)
                      ...+.|+++.-+.+  .+++|..+|.|.+-....+-.  .-.....++....++++|++ |.+.||+|-.    |..+.|
T Consensus        56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hd--Ss~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~I  133 (783)
T KOG1008|consen   56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHD--SSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKI  133 (783)
T ss_pred             CCCceeehhhcCCchhhhhhccccCceEEeecCCccc--ccceecccccccccccccccccHHHHHhhhhhhcccCCccc
Confidence            45677888776544  688899999999998866211  22334566888999999999 7778887743    567999


Q ss_pred             EeeeCCCC--CceeeEEEe-ccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecC-
Q psy11529         82 WTQNNDDK--KWKPTLVLL-RINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHP-  157 (244)
Q Consensus        82 wd~~~~~~--~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p-  157 (244)
                      ||  ..++  .......+. +......+++|..+.+.+.+|.....+.++|++....     ....-....+..+...| 
T Consensus       134 wd--i~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~-----~~~svnTk~vqG~tVdp~  206 (783)
T KOG1008|consen  134 WD--INSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLD-----SVSSVNTKYVQGITVDPF  206 (783)
T ss_pred             ee--cccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhh-----hhhhhhhhhcccceecCC
Confidence            99  5554  111111111 1334456888988888999999999999999985432     11111223567788888 


Q ss_pred             CCCEEEEeeCCCeEEEEEe-eecccccCCCCCCCCccccccceeEEecCC-CCCCCCeEEEEEecCCC-EEEEee-CCCc
Q psy11529        158 NNHLLGCGSTDFKVRVFSA-YIKDIESAPQSTNWGSKSTLGNCLVELNNS-SSGGGWIHSVAFSKDGN-KLCWTS-HDGS  233 (244)
Q Consensus       158 ~~~~l~~~~~dg~i~i~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~-~l~~~~-~dg~  233 (244)
                      .++++++- .||.|.+||. +.                 ...++..+... ......+..++|+|... .+++.. ..++
T Consensus       207 ~~nY~cs~-~dg~iAiwD~~rn-----------------ienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~t  268 (783)
T KOG1008|consen  207 SPNYFCSN-SDGDIAIWDTYRN-----------------IENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSIT  268 (783)
T ss_pred             CCCceecc-ccCceeeccchhh-----------------hccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcce
Confidence            77787765 4999999994 21                 12222222111 00023488999999433 444444 5578


Q ss_pred             EEEEeCCC
Q psy11529        234 INVRMSQQ  241 (244)
Q Consensus       234 i~vwd~~~  241 (244)
                      |+++|+..
T Consensus       269 Irlydi~~  276 (783)
T KOG1008|consen  269 IRLYDICV  276 (783)
T ss_pred             EEEecccc
Confidence            99998864

>KOG2314|consensus

Probab=99.00  E-value=6.9e-08  Score=74.29  Aligned_cols=180  Identities=21%  Similarity=0.267  Sum_probs=119.1

Q ss_pred             EEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeC-----------CccEEE
Q psy11529         13 TTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSA-----------DRNAYV   81 (244)
Q Consensus        13 ~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----------d~~i~i   81 (244)
                      +-+.|||.|.+|++-...| |.+|-=..    +..++.+. |. .|.-+.|||+.+||++-+.           ...++|
T Consensus       214 tyv~wSP~GTYL~t~Hk~G-I~lWGG~~----f~r~~RF~-Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~I  286 (698)
T KOG2314|consen  214 TYVRWSPKGTYLVTFHKQG-IALWGGES----FDRIQRFY-HP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLII  286 (698)
T ss_pred             eeEEecCCceEEEEEeccc-eeeecCcc----HHHHHhcc-CC-CceeeecCCccceEEEecCCccccCcccCCCceEEE
Confidence            4688999999999987654 88886433    34555554 54 4788999999999998653           257999


Q ss_pred             EeeeCCCCCceeeEEEeccCcce-EEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCC
Q psy11529         82 WTQNNDDKKWKPTLVLLRINRAA-TCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNH  160 (244)
Q Consensus        82 wd~~~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~  160 (244)
                      ||  +.+|.....+......... .-..||.|++++|.-.. ..|.||+..+-..    .....-.-..|....|+|.++
T Consensus       287 WD--I~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~l----ld~Kslki~gIr~FswsP~~~  359 (698)
T KOG2314|consen  287 WD--IATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFML----LDKKSLKISGIRDFSWSPTSN  359 (698)
T ss_pred             EE--ccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceee----ecccccCCccccCcccCCCcc
Confidence            99  7888766655543333333 34689999999998776 4588887655322    111111236789999999999


Q ss_pred             EEEEeeCC-----CeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEE
Q psy11529        161 LLGCGSTD-----FKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCW  227 (244)
Q Consensus       161 ~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~  227 (244)
                      +||.-+..     .++.+-.+                  ++.+.+.+-..+   .-.-..+-|-.+|.+|+.
T Consensus       360 llAYwtpe~~~~parvtL~ev------------------Ps~~~iRt~nlf---nVsDckLhWQk~gdyLcv  410 (698)
T KOG2314|consen  360 LLAYWTPETNNIPARVTLMEV------------------PSKREIRTKNLF---NVSDCKLHWQKSGDYLCV  410 (698)
T ss_pred             eEEEEcccccCCcceEEEEec------------------Cccceeeeccce---eeeccEEEeccCCcEEEE
Confidence            88865432     24556665                  445555544443   222234566677877764

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=99.00  E-value=7.5e-08  Score=74.67  Aligned_cols=157  Identities=14%  Similarity=0.203  Sum_probs=95.8

Q ss_pred             CCceEEEEEcCCCCeEEEe---cCC-CeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEE-eCCccEEEEe
Q psy11529          9 INPVTTHAWNNTRQQLAFT---PNN-QEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTC-SADRNAYVWT   83 (244)
Q Consensus         9 ~~~v~~~~~~~~~~~l~~~---~~d-~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~iwd   83 (244)
                      ...+..-+|+|+++.++..   ... ..+.++++..  +....+..+.++.   ...+|+|||++|+.+ ..|+...||-
T Consensus       192 ~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~--g~~~~i~~~~g~~---~~P~fspDG~~l~f~~~rdg~~~iy~  266 (425)
T COG0823         192 GSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNT--GKRPVILNFNGNN---GAPAFSPDGSKLAFSSSRDGSPDIYL  266 (425)
T ss_pred             CcceeccccCcCCCceEEEEEecCCCceEEEEeccC--CccceeeccCCcc---CCccCCCCCCEEEEEECCCCCccEEE
Confidence            5667778899999876655   223 4689999987  4334455544443   357899999987755 4466655554


Q ss_pred             eeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeC-CCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEE
Q psy11529         84 QNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSG-ARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLL  162 (244)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l  162 (244)
                      +++..+...   .+....+.-..-.|+|||++++..+. .|.-.||-++.....  ...... ....-....|+|||++|
T Consensus       267 ~dl~~~~~~---~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~--~~riT~-~~~~~~~p~~SpdG~~i  340 (425)
T COG0823         267 MDLDGKNLP---RLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQ--VTRLTF-SGGGNSNPVWSPDGDKI  340 (425)
T ss_pred             EcCCCCcce---ecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCc--eeEeec-cCCCCcCccCCCCCCEE
Confidence            436665522   23334444447889999999877654 555555555444331  122222 22222378899999988


Q ss_pred             EEeeCC-Ce--EEEEEe
Q psy11529        163 GCGSTD-FK--VRVFSA  176 (244)
Q Consensus       163 ~~~~~d-g~--i~i~d~  176 (244)
                      +..+.. |.  |.+.|+
T Consensus       341 ~~~~~~~g~~~i~~~~~  357 (425)
T COG0823         341 VFESSSGGQWDIDKNDL  357 (425)
T ss_pred             EEEeccCCceeeEEecc
Confidence            877643 44  444444

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=99.00  E-value=8.3e-08  Score=74.50  Aligned_cols=116  Identities=14%  Similarity=0.110  Sum_probs=82.5

Q ss_pred             CcceEEEEECCC-CCeEEEee----CCCe----EEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEeeCCCeE
Q psy11529        101 NRAATCVKWSPL-ENKFAAGS----GARL----ISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKV  171 (244)
Q Consensus       101 ~~~v~~~~~~~~-~~~l~~~~----~d~~----i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~i  171 (244)
                      .....++.|+-. +..+.+..    .+|.    -.+|++...+. ........+.+..+.+++++|+...++.|+.||.|
T Consensus       205 E~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~kl-qrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSi  283 (545)
T PF11768_consen  205 ENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKL-QRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSI  283 (545)
T ss_pred             cCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCce-eEEEEEEEecCCcceEEecCcccceEEEEecCCeE
Confidence            344567778763 44455432    2332    34666655443 33344455677899999999999999999999999


Q ss_pred             EEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCC
Q psy11529        172 RVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQ  240 (244)
Q Consensus       172 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~  240 (244)
                      .+||..                  .+  +..+...   .-..+.++|+|+|.++++|+..|.+.+||+.
T Consensus       284 iLyD~~------------------~~--~t~~~ka---~~~P~~iaWHp~gai~~V~s~qGelQ~FD~A  329 (545)
T PF11768_consen  284 ILYDTT------------------RG--VTLLAKA---EFIPTLIAWHPDGAIFVVGSEQGELQCFDMA  329 (545)
T ss_pred             EEEEcC------------------CC--eeeeeee---cccceEEEEcCCCcEEEEEcCCceEEEEEee
Confidence            999972                  22  2222222   5567899999999999999999999999975

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.98  E-value=4.2e-06  Score=63.14  Aligned_cols=97  Identities=13%  Similarity=0.015  Sum_probs=70.3

Q ss_pred             CeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeC----------CccEEEEeeeCCCCCceeeEEEecc
Q psy11529         31 QEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSA----------DRNAYVWTQNNDDKKWKPTLVLLRI  100 (244)
Q Consensus        31 ~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----------d~~i~iwd~~~~~~~~~~~~~~~~~  100 (244)
                      +.|.+.|..+  .  +.+..+..-..+- .+ ++||++.|+.+..          +..|.+||  ..+.+....+.+...
T Consensus        27 ~~v~ViD~~~--~--~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D--~~t~~~~~~i~~p~~   98 (352)
T TIGR02658        27 TQVYTIDGEA--G--RVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVID--PQTHLPIADIELPEG   98 (352)
T ss_pred             ceEEEEECCC--C--EEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEE--CccCcEEeEEccCCC
Confidence            8999999977  4  5666666433333 34 9999998877654          78999999  788876555543222


Q ss_pred             -----CcceEEEEECCCCCeEEEee-C-CCeEEEEEeecCCC
Q psy11529        101 -----NRAATCVKWSPLENKFAAGS-G-ARLISVCYFESEND  135 (244)
Q Consensus       101 -----~~~v~~~~~~~~~~~l~~~~-~-d~~i~i~d~~~~~~  135 (244)
                           ......++++|||++|++.. . +..+.+.|+.+++.
T Consensus        99 p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kv  140 (352)
T TIGR02658        99 PRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAF  140 (352)
T ss_pred             chhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcE
Confidence                 22344789999999999876 3 68899999877764

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.97  E-value=3.4e-06  Score=60.62  Aligned_cols=204  Identities=14%  Similarity=0.184  Sum_probs=113.0

Q ss_pred             CCceEEEEEcCCCC-eEEEecCCCeEEEeeeccCCCcceeeeeeccC-CCceEEEEeCCCCCeEEEEeCCccEEEEeeeC
Q psy11529          9 INPVTTHAWNNTRQ-QLAFTPNNQEVHLYQYEKAANDWSQLDVLDGH-DLKVTGIDWAPNTNRIVTCSADRNAYVWTQNN   86 (244)
Q Consensus         9 ~~~v~~~~~~~~~~-~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~   86 (244)
                      .+.+..++|+|+.+ ++++....+.|..++.++     +.+..+.-. .+....+++..++.++++--.++.+.+++++.
T Consensus        21 ~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G-----~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~   95 (248)
T PF06977_consen   21 LDELSGLTYNPDTGTLFAVQDEPGEIYELSLDG-----KVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDD   95 (248)
T ss_dssp             -S-EEEEEEETTTTEEEEEETTTTEEEEEETT-------EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE--
T ss_pred             cCCccccEEcCCCCeEEEEECCCCEEEEEcCCC-----CEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEec
Confidence            34699999999755 666777778888777765     444444322 35678899988787777666689999998522


Q ss_pred             CCCCcee----eEE--Ee-ccCcceEEEEECCCCCeEEEeeCCCeEEEEEeec---CCCceEEEee----ecCCCCceeE
Q psy11529         87 DDKKWKP----TLV--LL-RINRAATCVKWSPLENKFAAGSGARLISVCYFES---ENDWWVAKHI----KKPIKSTITC  152 (244)
Q Consensus        87 ~~~~~~~----~~~--~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~---~~~~~~~~~~----~~~~~~~v~~  152 (244)
                      .+.....    .+.  .. .++..+-.++|+|.++.|+++-...-..+|.++.   ..........    ....-..+.+
T Consensus        96 ~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~  175 (248)
T PF06977_consen   96 DTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSG  175 (248)
T ss_dssp             --TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---E
T ss_pred             cccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccc
Confidence            2221111    111  11 2445689999999988888887777778888875   2211111110    1112346889


Q ss_pred             EEecCC-CCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCC------CCCCCeEEEEEecCCCEE
Q psy11529        153 LDWHPN-NHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSS------SGGGWIHSVAFSKDGNKL  225 (244)
Q Consensus       153 ~~~~p~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~v~~~~~s~~~~~l  225 (244)
                      ++++|. +++++....+..|..+|.                   .++.+..+....      ..-...-.++|.++|++.
T Consensus       176 l~~~p~t~~lliLS~es~~l~~~d~-------------------~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LY  236 (248)
T PF06977_consen  176 LSYDPRTGHLLILSDESRLLLELDR-------------------QGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLY  236 (248)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEE-T-------------------T--EEEEEE-STTGGG-SS---SEEEEEE-TT--EE
T ss_pred             eEEcCCCCeEEEEECCCCeEEEECC-------------------CCCEEEEEEeCCcccCcccccCCccEEEECCCCCEE
Confidence            999995 456777777888988984                   455555443320      001357889999999755


Q ss_pred             EEeeCCCcEEEE
Q psy11529        226 CWTSHDGSINVR  237 (244)
Q Consensus       226 ~~~~~dg~i~vw  237 (244)
                      +++ +.+..+++
T Consensus       237 Ivs-EpNlfy~f  247 (248)
T PF06977_consen  237 IVS-EPNLFYRF  247 (248)
T ss_dssp             EEE-TTTEEEEE
T ss_pred             EEc-CCceEEEe
Confidence            544 66655544

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>KOG1275|consensus

Probab=98.94  E-value=1.4e-07  Score=76.72  Aligned_cols=184  Identities=11%  Similarity=0.118  Sum_probs=124.6

Q ss_pred             CCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCCCCCceeeEEEecc
Q psy11529         21 RQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRI  100 (244)
Q Consensus        21 ~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~  100 (244)
                      +..++.|+-...+..+|+.+  .  +..+...-..+.|.-+..  +++++.+|...|+|.+-|  .++.+  ....+..|
T Consensus       147 ~~~~i~Gg~Q~~li~~Dl~~--~--~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD--~~s~~--~iht~~aH  216 (1118)
T KOG1275|consen  147 PSTLIMGGLQEKLIHIDLNT--E--KETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRD--PNSFE--TIHTFDAH  216 (1118)
T ss_pred             Ccceeecchhhheeeeeccc--c--eeeeeeeccCCceEEEEe--cCcEEEeecccceEEeec--CCcCc--eeeeeecc
Confidence            44566777677788888877  3  333333322334555543  578999999999999999  66655  34556778


Q ss_pred             CcceEEEEECCCCCeEEEeeC---------CCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCC-CEEEEeeCCCe
Q psy11529        101 NRAATCVKWSPLENKFAAGSG---------ARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNN-HLLGCGSTDFK  170 (244)
Q Consensus       101 ~~~v~~~~~~~~~~~l~~~~~---------d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~l~~~~~dg~  170 (244)
                      .+.+..+..  .|+.|++|+.         |..|+|||++..+.+   ...  +......-+.|+|.- ..+++++..|.
T Consensus       217 s~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral---~PI--~~~~~P~flrf~Psl~t~~~V~S~sGq  289 (1118)
T KOG1275|consen  217 SGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRAL---SPI--QFPYGPQFLRFHPSLTTRLAVTSQSGQ  289 (1118)
T ss_pred             ccceeeeec--cCCeEEEeecccccccccccchhhhhhhhhhhcc---CCc--ccccCchhhhhcccccceEEEEecccc
Confidence            888876555  6889998875         455899999987641   111  111233567888853 57888889999


Q ss_pred             EEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEe
Q psy11529        171 VRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRM  238 (244)
Q Consensus       171 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd  238 (244)
                      ..+-|...-.              .....+..+...   ...+..+.+|+++..++.|..+|.|.+|.
T Consensus       290 ~q~vd~~~ls--------------NP~~~~~~v~p~---~s~i~~fDiSsn~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  290 FQFVDTATLS--------------NPPAGVKMVNPN---GSGISAFDISSNGDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             eeeccccccC--------------CCccceeEEccC---CCcceeEEecCCCceEEEecccCcEeeec
Confidence            9998842110              011112222222   55699999999999999999999999997

>KOG1275|consensus

Probab=98.91  E-value=2.8e-08  Score=80.59  Aligned_cols=147  Identities=15%  Similarity=0.194  Sum_probs=108.9

Q ss_pred             CCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeC---------CccEEEEeeeCCCC
Q psy11529         19 NTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSA---------DRNAYVWTQNNDDK   89 (244)
Q Consensus        19 ~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---------d~~i~iwd~~~~~~   89 (244)
                      .+++.+.+|...|+|.+-|.+.  -  +.++++..|.+.|..+..  .|+.|++++.         |..|+|||  ++.-
T Consensus       185 ~Nnr~lf~G~t~G~V~LrD~~s--~--~~iht~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYD--LRmm  256 (1118)
T KOG1275|consen  185 YNNRNLFCGDTRGTVFLRDPNS--F--ETIHTFDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYD--LRMM  256 (1118)
T ss_pred             ecCcEEEeecccceEEeecCCc--C--ceeeeeeccccceeeeec--cCCeEEEeecccccccccccchhhhhh--hhhh
Confidence            4678999999999999999977  3  889999999999987655  5889999875         56689999  5554


Q ss_pred             CceeeEEEeccCcceEEEEECCC-CCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEeeCC
Q psy11529         90 KWKPTLVLLRINRAATCVKWSPL-ENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTD  168 (244)
Q Consensus        90 ~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d  168 (244)
                      +....+.+   .....-+.|+|. ...+++++..|...+-|..+-..-........+....+..++++++++.++.|..+
T Consensus       257 ral~PI~~---~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~  333 (1118)
T KOG1275|consen  257 RALSPIQF---PYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHE  333 (1118)
T ss_pred             hccCCccc---ccCchhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEeccc
Confidence            43222222   222355778886 56788899999999988322221111233445555679999999999999999999


Q ss_pred             CeEEEEEe
Q psy11529        169 FKVRVFSA  176 (244)
Q Consensus       169 g~i~i~d~  176 (244)
                      |.|.+|.-
T Consensus       334 g~v~~wa~  341 (1118)
T KOG1275|consen  334 GHVNLWAD  341 (1118)
T ss_pred             CcEeeecC
Confidence            99999973

>KOG2066|consensus

Probab=98.90  E-value=5.9e-07  Score=72.16  Aligned_cols=142  Identities=16%  Similarity=0.206  Sum_probs=98.4

Q ss_pred             CCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCC-----CCeEEEEeCCccEEEEeeeCCCCCceee
Q psy11529         20 TRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPN-----TNRIVTCSADRNAYVWTQNNDDKKWKPT   94 (244)
Q Consensus        20 ~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~l~~~~~d~~i~iwd~~~~~~~~~~~   94 (244)
                      +|.++++|+.||+|.|-.+.+  .  +....+. ...++.+++++|+     .+.+++|+.-| +.++.-+.-...  ..
T Consensus        82 ~Gey~asCS~DGkv~I~sl~~--~--~~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk--~~  153 (846)
T KOG2066|consen   82 EGEYVASCSDDGKVVIGSLFT--D--DEITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNK--DS  153 (846)
T ss_pred             CCceEEEecCCCcEEEeeccC--C--ccceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCc--cc
Confidence            499999999999999999876  3  3343444 5678999999997     56789999888 777652111111  12


Q ss_pred             EEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCC-----CceeEEEecCCCCEEEEeeCCC
Q psy11529         95 LVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIK-----STITCLDWHPNNHLLGCGSTDF  169 (244)
Q Consensus        95 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~-----~~v~~~~~~p~~~~l~~~~~dg  169 (244)
                      ..+....+.|.++.|.  |+++|-++++| +++||...++.   ......++.     .-...+.|.++.+ |+.| ...
T Consensus       154 v~l~~~eG~I~~i~W~--g~lIAWand~G-v~vyd~~~~~~---l~~i~~p~~~~R~e~fpphl~W~~~~~-LVIG-W~d  225 (846)
T KOG2066|consen  154 VVLSEGEGPIHSIKWR--GNLIAWANDDG-VKVYDTPTRQR---LTNIPPPSQSVRPELFPPHLHWQDEDR-LVIG-WGD  225 (846)
T ss_pred             eeeecCccceEEEEec--CcEEEEecCCC-cEEEeccccce---eeccCCCCCCCCcccCCCceEecCCCe-EEEe-cCC
Confidence            2345678899999995  67999998888 99999988875   222222221     2234578887664 4444 345


Q ss_pred             eEEEEEee
Q psy11529        170 KVRVFSAY  177 (244)
Q Consensus       170 ~i~i~d~~  177 (244)
                      +|+|..++
T Consensus       226 ~v~i~~I~  233 (846)
T KOG2066|consen  226 SVKICSIK  233 (846)
T ss_pred             eEEEEEEe
Confidence            68888886

>KOG2314|consensus

Probab=98.88  E-value=3.5e-07  Score=70.55  Aligned_cols=203  Identities=14%  Similarity=0.205  Sum_probs=124.0

Q ss_pred             eCCCceEEEEEcCCCCeEEEecCC-----CeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEe-------
Q psy11529          7 FGINPVTTHAWNNTRQQLAFTPNN-----QEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCS-------   74 (244)
Q Consensus         7 ~~~~~v~~~~~~~~~~~l~~~~~d-----~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-------   74 (244)
                      +.-..|....|+|.++.||.=...     -.+.+..+..  .  +.+++-.-|.-.=..+-|-.+|.+|+.--       
T Consensus       344 lki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs--~--~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~  419 (698)
T KOG2314|consen  344 LKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPS--K--REIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSK  419 (698)
T ss_pred             cCCccccCcccCCCcceEEEEcccccCCcceEEEEecCc--c--ceeeeccceeeeccEEEeccCCcEEEEEEEeecccc
Confidence            345788899999998888865321     2455566544  3  33433333332223466777888887431       


Q ss_pred             ---CCccEEEEeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeC---CCeEEEEEeecCCCceEEEeeecCCCC
Q psy11529         75 ---ADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSG---ARLISVCYFESENDWWVAKHIKKPIKS  148 (244)
Q Consensus        75 ---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~  148 (244)
                         .-..+.|+.+  +... ++... ......+...+|-|.|+.+++-+.   ..++.+|-+++....+  .....-...
T Consensus       420 ~~g~f~n~eIfri--reKd-Ipve~-velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~--~lVk~~dk~  493 (698)
T KOG2314|consen  420 VKGQFSNLEIFRI--REKD-IPVEV-VELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKP--SLVKELDKK  493 (698)
T ss_pred             ccceEeeEEEEEe--eccC-CCcee-eecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCch--hhhhhhccc
Confidence               1123555663  2222 12222 234677889999999998877654   4578899888543311  112222235


Q ss_pred             ceeEEEecCCCCEEEEee---CCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEE
Q psy11529        149 TITCLDWHPNNHLLGCGS---TDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKL  225 (244)
Q Consensus       149 ~v~~~~~~p~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  225 (244)
                      ..+.+.|+|.|++++.+.   ..|.+..+|+...                  .+...-...   ....+.+.|.|.|+|+
T Consensus       494 ~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a------------------~~k~~~~~e---h~~at~veWDPtGRYv  552 (698)
T KOG2314|consen  494 FANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYA------------------DLKDTASPE---HFAATEVEWDPTGRYV  552 (698)
T ss_pred             ccceEEEcCCCcEEEEEEecccccceEEEecchh------------------hhhhccCcc---ccccccceECCCCCEE
Confidence            678999999999887754   5788999998321                  111111111   3456789999999999


Q ss_pred             EEeeCCC------cEEEEeCC
Q psy11529        226 CWTSHDG------SINVRMSQ  240 (244)
Q Consensus       226 ~~~~~dg------~i~vwd~~  240 (244)
                      +++++-.      --++|+++
T Consensus       553 vT~ss~wrhk~d~GYri~tfq  573 (698)
T KOG2314|consen  553 VTSSSSWRHKVDNGYRIFTFQ  573 (698)
T ss_pred             EEeeehhhhccccceEEEEee
Confidence            9998744      34556543

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.84  E-value=1.4e-06  Score=63.07  Aligned_cols=188  Identities=15%  Similarity=0.072  Sum_probs=109.9

Q ss_pred             CCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCCCCCceeeEEEec
Q psy11529         20 TRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLR   99 (244)
Q Consensus        20 ~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~   99 (244)
                      ++..+++++.++.|..||..+  +  +.+..... ...+.... ...+..++.++.++.+..+|  ..+++.........
T Consensus        35 ~~~~v~~~~~~~~l~~~d~~t--G--~~~W~~~~-~~~~~~~~-~~~~~~v~v~~~~~~l~~~d--~~tG~~~W~~~~~~  106 (238)
T PF13360_consen   35 DGGRVYVASGDGNLYALDAKT--G--KVLWRFDL-PGPISGAP-VVDGGRVYVGTSDGSLYALD--AKTGKVLWSIYLTS  106 (238)
T ss_dssp             ETTEEEEEETTSEEEEEETTT--S--EEEEEEEC-SSCGGSGE-EEETTEEEEEETTSEEEEEE--TTTSCEEEEEEE-S
T ss_pred             eCCEEEEEcCCCEEEEEECCC--C--CEEEEeec-ccccccee-eecccccccccceeeeEecc--cCCcceeeeecccc
Confidence            556677777899999999866  4  55544443 22211111 12355666666788999999  88998665532211


Q ss_pred             c-C-cceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCce-------eEEEecCCCCEEEEeeCCCe
Q psy11529        100 I-N-RAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTI-------TCLDWHPNNHLLGCGSTDFK  170 (244)
Q Consensus       100 ~-~-~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v-------~~~~~~p~~~~l~~~~~dg~  170 (244)
                      . . ...........+..++++..++.+..+|.++++..+............+       ..+.+. ++ .++.++.++.
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~v~~~~~~g~  184 (238)
T PF13360_consen  107 SPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVIS-DG-RVYVSSGDGR  184 (238)
T ss_dssp             SCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECC-TT-EEEEECCTSS
T ss_pred             ccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEE-CC-EEEEEcCCCe
Confidence            1 1 1112222222377888888899999999999876444433111111111       223333 44 6666677775


Q ss_pred             -EEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCCC
Q psy11529        171 -VRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQV  242 (244)
Q Consensus       171 -i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~  242 (244)
                       +.+ |+                  .+++.+.....    .. +.. ...+++..|+.++.++.|..||+++-
T Consensus       185 ~~~~-d~------------------~tg~~~w~~~~----~~-~~~-~~~~~~~~l~~~~~~~~l~~~d~~tG  232 (238)
T PF13360_consen  185 VVAV-DL------------------ATGEKLWSKPI----SG-IYS-LPSVDGGTLYVTSSDGRLYALDLKTG  232 (238)
T ss_dssp             EEEE-ET------------------TTTEEEEEECS----S--ECE-CEECCCTEEEEEETTTEEEEEETTTT
T ss_pred             EEEE-EC------------------CCCCEEEEecC----CC-ccC-CceeeCCEEEEEeCCCEEEEEECCCC
Confidence             555 88                  56665433332    22 222 13467778888889999999999864

...

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.84  E-value=9.5e-06  Score=62.62  Aligned_cols=209  Identities=14%  Similarity=0.092  Sum_probs=116.9

Q ss_pred             ceEEEEEcCCCCeEEEecCCCeEEEeeeccCC--C-------------------------------------cceeeeee
Q psy11529         11 PVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAA--N-------------------------------------DWSQLDVL   51 (244)
Q Consensus        11 ~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~--~-------------------------------------~~~~~~~~   51 (244)
                      .|+.+.|+++..-|++|...|.|.||......  +                                     .+.+...+
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~   82 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL   82 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence            58899999999999999999999999763310  0                                     01112223


Q ss_pred             ccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCCCCCceeeEEEec------cCcceEEEEECC-----CC---CeEE
Q psy11529         52 DGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLR------INRAATCVKWSP-----LE---NKFA  117 (244)
Q Consensus        52 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~------~~~~v~~~~~~~-----~~---~~l~  117 (244)
                      ....++|++++.| |=-+++.|..+|.+.|.|  ++....+....+..      ....+.++.|.-     |+   -.++
T Consensus        83 ~~~~g~vtal~~S-~iGFvaigy~~G~l~viD--~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~  159 (395)
T PF08596_consen   83 DAKQGPVTALKNS-DIGFVAIGYESGSLVVID--LRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL  159 (395)
T ss_dssp             ---S-SEEEEEE--BTSEEEEEETTSEEEEEE--TTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred             eccCCcEeEEecC-CCcEEEEEecCCcEEEEE--CCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence            3346889999987 455889999999999999  66665444433222      234577777762     22   4588


Q ss_pred             EeeCCCeEEEEEeec-CCCceEEEe--eecCCCCceeEEE-ecCC-----------------C---CEEEEeeCCCeEEE
Q psy11529        118 AGSGARLISVCYFES-ENDWWVAKH--IKKPIKSTITCLD-WHPN-----------------N---HLLGCGSTDFKVRV  173 (244)
Q Consensus       118 ~~~~d~~i~i~d~~~-~~~~~~~~~--~~~~~~~~v~~~~-~~p~-----------------~---~~l~~~~~dg~i~i  173 (244)
                      +|+..|.+.+|.+.- ....+....  ....+.+++..+. ++.+                 |   +.++....+..+++
T Consensus       160 vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv  239 (395)
T PF08596_consen  160 VGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRV  239 (395)
T ss_dssp             EEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEE
T ss_pred             EEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEE
Confidence            999999999998863 222122111  1123445554443 2211                 1   12344445677999


Q ss_pred             EEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEe-----cCCCEEEEeeCCCcEEEEeCCCCC
Q psy11529        174 FSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFS-----KDGNKLCWTSHDGSINVRMSQQVL  243 (244)
Q Consensus       174 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-----~~~~~l~~~~~dg~i~vwd~~~~~  243 (244)
                      +..                  ...+..+.....   ......+.+-     ..+..|++-..+|.|+++.+..+.
T Consensus       240 ~~~------------------~~~k~~~K~~~~---~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lk  293 (395)
T PF08596_consen  240 FKP------------------PKSKGAHKSFDD---PFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLK  293 (395)
T ss_dssp             E-T------------------T---EEEEE-SS----EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--
T ss_pred             EeC------------------CCCcccceeecc---ccccceEEEEeecccCCceEEEEEECCCcEEEEECCCch
Confidence            987                  444444433332   2334445553     356678888899999999998764

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>KOG3617|consensus

Probab=98.84  E-value=1.3e-07  Score=76.47  Aligned_cols=110  Identities=9%  Similarity=0.139  Sum_probs=83.6

Q ss_pred             EEEEcCCCCeEEEec----CCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCCCC
Q psy11529         14 THAWNNTRQQLAFTP----NNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDK   89 (244)
Q Consensus        14 ~~~~~~~~~~l~~~~----~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~   89 (244)
                      -..|+|...+||+++    ..|.|.||--.+     ++..... ..-.+++++|+|..-.|+.|-.-|.+.+|.  ..+.
T Consensus        20 i~SWHPsePlfAVA~fS~er~GSVtIfadtG-----EPqr~Vt-~P~hatSLCWHpe~~vLa~gwe~g~~~v~~--~~~~   91 (1416)
T KOG3617|consen   20 ISSWHPSEPLFAVASFSPERGGSVTIFADTG-----EPQRDVT-YPVHATSLCWHPEEFVLAQGWEMGVSDVQK--TNTT   91 (1416)
T ss_pred             ccccCCCCceeEEEEecCCCCceEEEEecCC-----CCCcccc-cceehhhhccChHHHHHhhccccceeEEEe--cCCc
Confidence            357999999998875    468899886554     2222222 223456799999888888888889999999  4444


Q ss_pred             CceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecC
Q psy11529         90 KWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESE  133 (244)
Q Consensus        90 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~  133 (244)
                      +  .......|+.++..+.||++|..++++..-|.+.+|.++..
T Consensus        92 e--~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~  133 (1416)
T KOG3617|consen   92 E--THTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVI  133 (1416)
T ss_pred             e--eeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeec
Confidence            3  23334568999999999999999999999999999998743

>KOG1912|consensus

Probab=98.83  E-value=1.8e-06  Score=69.47  Aligned_cols=207  Identities=14%  Similarity=0.178  Sum_probs=136.6

Q ss_pred             EEeCCCceEEEEEcCCC------------CeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCC---CC-C
Q psy11529          5 YSFGINPVTTHAWNNTR------------QQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAP---NT-N   68 (244)
Q Consensus         5 ~~~~~~~v~~~~~~~~~------------~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~-~   68 (244)
                      ...|+..|+.+.|.|..            -+||++.-.|.|.+||...  .  ..+..+..|..++..+.|-+   +. .
T Consensus        51 ie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~--~--s~~~~l~~~~~~~qdl~W~~~rd~Srd  126 (1062)
T KOG1912|consen   51 IELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVL--A--SVINWLSHSNDSVQDLCWVPARDDSRD  126 (1062)
T ss_pred             cccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehh--h--hhhhhhcCCCcchhheeeeeccCcchh
Confidence            44568899999998742            1567777789999999876  3  45667777889999999876   33 3


Q ss_pred             eEEEEeCCccEEEEeeeCCCCCceeeEEEeccCcceEEEEECC-CCCeEEEeeCCCeEEEEEeecCCCc---eEEEeeec
Q psy11529         69 RIVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSP-LENKFAAGSGARLISVCYFESENDW---WVAKHIKK  144 (244)
Q Consensus        69 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~---~~~~~~~~  144 (244)
                      .|++-....++.+|+  ..+|+.....  ........|+.+.| |.+.+...+..|.+.+-+.-....-   ........
T Consensus       127 ~LlaIh~ss~lvLwn--tdtG~k~Wk~--~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~s  202 (1062)
T KOG1912|consen  127 VLLAIHGSSTLVLWN--TDTGEKFWKY--DYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITS  202 (1062)
T ss_pred             eeEEecCCcEEEEEE--ccCCceeecc--ccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEec
Confidence            566666778999999  7788743322  22345567788888 4566666666776666554222110   00111111


Q ss_pred             CCCC-------------------------ceeEEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccce
Q psy11529        145 PIKS-------------------------TITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNC  199 (244)
Q Consensus       145 ~~~~-------------------------~v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~  199 (244)
                      .|..                         ....++|+|.-+-++.......+.++|+                  .-..+
T Consensus       203 d~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dl------------------e~~~~  264 (1062)
T KOG1912|consen  203 DHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDL------------------EYECC  264 (1062)
T ss_pred             CccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcc------------------hhhce
Confidence            1100                         1224677886654444456678999999                  45566


Q ss_pred             eEEecCCCCCCCCeEEEEEecCCC--EEEEeeCCCcEEEEeCC
Q psy11529        200 LVELNNSSSGGGWIHSVAFSKDGN--KLCWTSHDGSINVRMSQ  240 (244)
Q Consensus       200 ~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~vwd~~  240 (244)
                      +....-.   .+.+.-+.+-|+++  .|++.-.||.+.+|--+
T Consensus       265 l~vvpie---r~~akfv~vlP~~~rd~LfclH~nG~ltirvrk  304 (1062)
T KOG1912|consen  265 LAVVPIE---RGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRK  304 (1062)
T ss_pred             eEEEEec---cCCcceeEeccCCCcceEEEEecCCeEEEEEee
Confidence            6666655   66677788888765  78888899999998644

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=98.81  E-value=3.4e-07  Score=69.84  Aligned_cols=154  Identities=18%  Similarity=0.131  Sum_probs=103.6

Q ss_pred             CCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCC------------
Q psy11529          9 INPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSAD------------   76 (244)
Q Consensus         9 ~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------------   76 (244)
                      .-++..++|||.|.+|++.... .|.+|.-..  .  ..+..+.  ...|..+.|+|+++||.+-+..            
T Consensus        32 ~~p~~~~~~SP~G~~l~~~~~~-~V~~~~g~~--~--~~l~~~~--~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~  104 (561)
T COG5354          32 NWPVAYVSESPLGTYLFSEHAA-GVECWGGPS--K--AKLVRFR--HPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPF  104 (561)
T ss_pred             CcchhheeecCcchheehhhcc-ceEEccccc--h--hheeeee--cCCceecccCcccceeeeeccCCccChhhccCCc
Confidence            4678899999999999988664 589998765  3  3333333  3568899999999999986543            


Q ss_pred             ---ccEEEEeeeCCCCCceeeEEEeccCcceE-EEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCC-CCcee
Q psy11529         77 ---RNAYVWTQNNDDKKWKPTLVLLRINRAAT-CVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPI-KSTIT  151 (244)
Q Consensus        77 ---~~i~iwd~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~-~~~v~  151 (244)
                         +.+.+||  ..++.....+.......-.+ -+.|+-+++++|-. -...+.|+++ +...   ........ ...+.
T Consensus       105 ~~~n~~~vwd--~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~-t~n~---~~~p~~~lr~~gi~  177 (561)
T COG5354         105 TSKNNVFVWD--IASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEI-TDNI---EEHPFKNLRPVGIL  177 (561)
T ss_pred             cccCceeEEe--ccCceeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEec-CCcc---ccCchhhcccccee
Confidence               3599999  78887655544333332244 67888888876655 3456889887 4332   11111111 26788


Q ss_pred             EEEecCCCC--EEEE-----eeCCCeEEEEEe
Q psy11529        152 CLDWHPNNH--LLGC-----GSTDFKVRVFSA  176 (244)
Q Consensus       152 ~~~~~p~~~--~l~~-----~~~dg~i~i~d~  176 (244)
                      ...|+|.++  .|++     .+..+++++|.+
T Consensus       178 dFsisP~~n~~~la~~tPEk~~kpa~~~i~sI  209 (561)
T COG5354         178 DFSISPEGNHDELAYWTPEKLNKPAMVRILSI  209 (561)
T ss_pred             eEEecCCCCCceEEEEccccCCCCcEEEEEEc
Confidence            999999643  4443     345678999998

>KOG0882|consensus

Probab=98.81  E-value=1.7e-07  Score=70.52  Aligned_cols=226  Identities=13%  Similarity=0.060  Sum_probs=139.7

Q ss_pred             CCCceEEEEEcCCCCeEEEecC-CCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCC-CCC-eEE-EEeCCccEEEEe
Q psy11529          8 GINPVTTHAWNNTRQQLAFTPN-NQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAP-NTN-RIV-TCSADRNAYVWT   83 (244)
Q Consensus         8 ~~~~v~~~~~~~~~~~l~~~~~-d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~-~l~-~~~~d~~i~iwd   83 (244)
                      |...|.+++.+-++.++.+.+. |..++++|+++  -.......+..-.+.+..+ .+| +.. .++ +.-.++.+.++|
T Consensus        52 HL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn--~DminmiKL~~lPg~a~wv-~skGd~~s~IAVs~~~sg~i~VvD  128 (558)
T KOG0882|consen   52 HLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVEN--FDMINMIKLVDLPGFAEWV-TSKGDKISLIAVSLFKSGKIFVVD  128 (558)
T ss_pred             HHHHHHhhhccccceeEeeccCcccceeEEEeec--cchhhhcccccCCCceEEe-cCCCCeeeeEEeecccCCCcEEEC
Confidence            3566778888889999999777 99999999976  2122223333333433332 233 111 233 334589999999


Q ss_pred             eeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCC------CceEEEe-----eecCCCCceeE
Q psy11529         84 QNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESEN------DWWVAKH-----IKKPIKSTITC  152 (244)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~------~~~~~~~-----~~~~~~~~v~~  152 (244)
                        -....+.....-.-|..+|.++.++|.+..+.+....|-|.-|..+..-      ..+..+.     .....+....+
T Consensus       129 --~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts  206 (558)
T KOG0882|consen  129 --GFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTS  206 (558)
T ss_pred             --CcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccc
Confidence              4444333334445588999999999999999999999999999877411      1011110     11123467889


Q ss_pred             EEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCC----CCCc-------cccccce---eEEecCCCCCCCCeEEEEE
Q psy11529        153 LDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQST----NWGS-------KSTLGNC---LVELNNSSSGGGWIHSVAF  218 (244)
Q Consensus       153 ~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~----~~~~-------~~~~~~~---~~~~~~~~~~~~~v~~~~~  218 (244)
                      +.|+|+|..+.+-+.|..|++++..+.++..--.+.    ....       ...-++.   ..++..|.  ...-+.+.|
T Consensus       207 ~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~--~~~~~~~~f  284 (558)
T KOG0882|consen  207 FEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHG--STVGTNAVF  284 (558)
T ss_pred             eEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhc--CcccceeEE
Confidence            999999999999999999999999766543211000    0000       0000000   01122221  344567889


Q ss_pred             ecCCCEEEEeeCCCcEEEEeCCC
Q psy11529        219 SKDGNKLCWTSHDGSINVRMSQQ  241 (244)
Q Consensus       219 s~~~~~l~~~~~dg~i~vwd~~~  241 (244)
                      ...|++|+-++-=| |+|.++.+
T Consensus       285 des~~flly~t~~g-ikvin~~t  306 (558)
T KOG0882|consen  285 DESGNFLLYGTILG-IKVINLDT  306 (558)
T ss_pred             cCCCCEEEeeccee-EEEEEeec
Confidence            99999998876544 66766654

>KOG3621|consensus

Probab=98.79  E-value=2.3e-07  Score=73.41  Aligned_cols=144  Identities=15%  Similarity=0.089  Sum_probs=99.6

Q ss_pred             CCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCC
Q psy11529          8 GINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNND   87 (244)
Q Consensus         8 ~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~   87 (244)
                      +...|.--+++..+++++.|+..|.+++|+...  +. .......+-.+.+..+..+++..++|+|+..|.|.++-+  .
T Consensus        32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~--~~-~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql--~  106 (726)
T KOG3621|consen   32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHT--GE-MRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQL--N  106 (726)
T ss_pred             CcceEEEEEeecCCceEEEecccceEEEEecCc--hh-hhcccccCccceEEEEEecchhHhhhhhcCCceEEeehh--h
Confidence            355666667778889999999999999999877  31 222233334566677788998889999999999999984  3


Q ss_pred             CCCceee-EE---EeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEec
Q psy11529         88 DKKWKPT-LV---LLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWH  156 (244)
Q Consensus        88 ~~~~~~~-~~---~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~  156 (244)
                      .+..... ..   -..|...|++++|++++..+++|...|+|..-.++................+.|-.+++.
T Consensus       107 ~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~  179 (726)
T KOG3621|consen  107 KELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL  179 (726)
T ss_pred             ccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc
Confidence            3221111 11   123578899999999999999999999999888777322111222333345677777665

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.78  E-value=9.1e-07  Score=68.78  Aligned_cols=163  Identities=18%  Similarity=0.217  Sum_probs=96.7

Q ss_pred             eeeeeccCCCceEEEEeCCCCCeEEEEe---CC-ccEEEEeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEee-C
Q psy11529         47 QLDVLDGHDLKVTGIDWAPNTNRIVTCS---AD-RNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGS-G  121 (244)
Q Consensus        47 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~  121 (244)
                      ....+..-...+..-+|+|+++.++...   .. ..+.+++  +.++.......   ..+.-...+|+|||+.|+.+. .
T Consensus       184 ~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~--l~~g~~~~i~~---~~g~~~~P~fspDG~~l~f~~~r  258 (425)
T COG0823         184 NQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLD--LNTGKRPVILN---FNGNNGAPAFSPDGSKLAFSSSR  258 (425)
T ss_pred             ceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEe--ccCCccceeec---cCCccCCccCCCCCCEEEEEECC
Confidence            3334444456677788999998766542   22 4588888  67776444443   344455679999998877654 4


Q ss_pred             CCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEeeC-CCe--EEEEEeeecccccCCCCCCCCccccccc
Q psy11529        122 ARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGST-DFK--VRVFSAYIKDIESAPQSTNWGSKSTLGN  198 (244)
Q Consensus       122 d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~-dg~--i~i~d~~~~~~~~~~~~~~~~~~~~~~~  198 (244)
                      |+...||-++.....   ........+.-..-.|+|||+.|+..++ .|.  |.++++                   .+.
T Consensus       259 dg~~~iy~~dl~~~~---~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~-------------------~g~  316 (425)
T COG0823         259 DGSPDIYLMDLDGKN---LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDL-------------------EGS  316 (425)
T ss_pred             CCCccEEEEcCCCCc---ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECC-------------------CCC
Confidence            666555555444331   1112323334447889999998887665 444  555554                   222


Q ss_pred             eeEEecCCCCCCCCeEEEEEecCCCEEEEeeC-CCc--EEEEeC
Q psy11529        199 CLVELNNSSSGGGWIHSVAFSKDGNKLCWTSH-DGS--INVRMS  239 (244)
Q Consensus       199 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~--i~vwd~  239 (244)
                      ....+...   ...-....|+|||++|+..+. +|.  |.+.|+
T Consensus       317 ~~~riT~~---~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~  357 (425)
T COG0823         317 QVTRLTFS---GGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDL  357 (425)
T ss_pred             ceeEeecc---CCCCcCccCCCCCCEEEEEeccCCceeeEEecc
Confidence            22333322   222237889999999887764 344  444444

>KOG1920|consensus

Probab=98.76  E-value=3.2e-06  Score=71.12  Aligned_cols=167  Identities=14%  Similarity=0.193  Sum_probs=101.5

Q ss_pred             EeCCCceEEEEEcCCCCeEEEecCCCeEEEeeecc------CC-------C-----cc-eeeeeeccCC-----------
Q psy11529          6 SFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEK------AA-------N-----DW-SQLDVLDGHD-----------   55 (244)
Q Consensus         6 ~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~------~~-------~-----~~-~~~~~~~~~~-----------   55 (244)
                      ..-...|.+++||||++.++..+..+++.+....-      +-       +     .| +....+++..           
T Consensus       106 g~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~  185 (1265)
T KOG1920|consen  106 GNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEK  185 (1265)
T ss_pred             eeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccccccccccccccceecccccceeeecchhhhcccccccc
Confidence            33478999999999999999888877777755310      00       0     00 0011122111           


Q ss_pred             ----------CceEEEEeCCCCCeEEEE-----eCCccEEEEeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEee
Q psy11529         56 ----------LKVTGIDWAPNTNRIVTC-----SADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGS  120 (244)
Q Consensus        56 ----------~~v~~~~~~~~~~~l~~~-----~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  120 (244)
                                ..=.++.|--||+++++.     .....|++||  .+ +......  ....+.-.+++|-|.|..+++-.
T Consensus       186 ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~d--rE-g~Lns~s--e~~~~l~~~LsWkPsgs~iA~iq  260 (1265)
T KOG1920|consen  186 EKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYD--RE-GALNSTS--EPVEGLQHSLSWKPSGSLIAAIQ  260 (1265)
T ss_pred             cccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEec--cc-chhhccc--CcccccccceeecCCCCeEeeee
Confidence                      112358899999999873     2237999999  44 4422221  22334456899999999988853


Q ss_pred             ---CCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEE---eeCCCeEEEEEeee
Q psy11529        121 ---GARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGC---GSTDFKVRVFSAYI  178 (244)
Q Consensus       121 ---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~---~~~dg~i~i~d~~~  178 (244)
                         .|+.|.+|.-+.-.. .............+..++|+.++..|++   ......|++|-+.+
T Consensus       261 ~~~sd~~IvffErNGL~h-g~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~N  323 (1265)
T KOG1920|consen  261 CKTSDSDIVFFERNGLRH-GEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGN  323 (1265)
T ss_pred             ecCCCCcEEEEecCCccc-cccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecC
Confidence               355677765433221 0111111222234999999999999887   44445699998743

>KOG1645|consensus

Probab=98.75  E-value=1.7e-06  Score=64.27  Aligned_cols=73  Identities=8%  Similarity=0.104  Sum_probs=60.0

Q ss_pred             CCCceEEEEEcCCCC-eEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCC-CeEEEEeCCccEEEEeee
Q psy11529          8 GINPVTTHAWNNTRQ-QLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNT-NRIVTCSADRNAYVWTQN   85 (244)
Q Consensus         8 ~~~~v~~~~~~~~~~-~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~   85 (244)
                      +...|.+++|||..+ ++..++.+..|+|.|+++  .  ..+..+..+ ..+++++|.-+. .+++.|...|.|.+||++
T Consensus       192 ~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet--~--~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R  266 (463)
T KOG1645|consen  192 EGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLET--S--CVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMR  266 (463)
T ss_pred             cchhhhhhccCccccceeeeeccCceEEEEeccc--c--eeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEcc
Confidence            367799999999877 788889999999999988  3  556666666 889999999855 466777779999999965

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.74  E-value=4.7e-06  Score=64.66  Aligned_cols=176  Identities=10%  Similarity=0.050  Sum_probs=105.2

Q ss_pred             CeEEEecCCCeEEEeeeccCCCcceeeeeeccC-C---C---ceEEEEeCC--CCCeEEEEeCCccEEEEeeeCCCCCce
Q psy11529         22 QQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGH-D---L---KVTGIDWAP--NTNRIVTCSADRNAYVWTQNNDDKKWK   92 (244)
Q Consensus        22 ~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~-~---~---~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~   92 (244)
                      ..++++..++.+..+|..+  +  +........ .   .   ....+.-+|  .+..++.++.++.+..+|  ..+++..
T Consensus       191 ~~v~~~~~~g~v~ald~~t--G--~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d--~~tG~~~  264 (377)
T TIGR03300       191 GGVLVGFAGGKLVALDLQT--G--QPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALD--LRSGRVL  264 (377)
T ss_pred             CEEEEECCCCEEEEEEccC--C--CEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEE--CCCCcEE
Confidence            3566777788898888866  4  222221100 0   0   000111112  355777788899999999  7788744


Q ss_pred             eeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEeeCCCeEE
Q psy11529         93 PTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVR  172 (244)
Q Consensus        93 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~i~  172 (244)
                      .....    .......  ..+..+++++.++.+..+|..+++..|.....  . .........  .+..+++++.+|.++
T Consensus       265 W~~~~----~~~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~--~-~~~~ssp~i--~g~~l~~~~~~G~l~  333 (377)
T TIGR03300       265 WKRDA----SSYQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDEL--K-YRQLTAPAV--VGGYLVVGDFEGYLH  333 (377)
T ss_pred             Eeecc----CCccCce--EeCCEEEEECCCCeEEEEECCCCcEEEccccc--c-CCccccCEE--ECCEEEEEeCCCEEE
Confidence            33321    1111122  24667888889999999999888753332111  1 111222222  356888999999999


Q ss_pred             EEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCe-EEEEEecCCCEEEEeeCCCcEEEE
Q psy11529        173 VFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWI-HSVAFSKDGNKLCWTSHDGSINVR  237 (244)
Q Consensus       173 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~s~~~~~l~~~~~dg~i~vw  237 (244)
                      ++|.                  .+++.+..+..+   ...+ .+.++. ++ .|+.++.||.|..+
T Consensus       334 ~~d~------------------~tG~~~~~~~~~---~~~~~~sp~~~-~~-~l~v~~~dG~l~~~  376 (377)
T TIGR03300       334 WLSR------------------EDGSFVARLKTD---GSGIASPPVVV-GD-GLLVQTRDGDLYAF  376 (377)
T ss_pred             EEEC------------------CCCCEEEEEEcC---CCccccCCEEE-CC-EEEEEeCCceEEEe
Confidence            9998                  678888877765   4332 333333 44 47788899998875

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.74  E-value=7.7e-06  Score=59.13  Aligned_cols=136  Identities=13%  Similarity=0.060  Sum_probs=82.2

Q ss_pred             CCeEEEeeeccCCCcceeeeeeccCCCceEEEE--eCCCCCeEEEEeCCccEEEEeeeCCCCCceeeEEEeccCcceEEE
Q psy11529         30 NQEVHLYQYEKAANDWSQLDVLDGHDLKVTGID--WAPNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCV  107 (244)
Q Consensus        30 d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~  107 (244)
                      +|+|..+|..+  +  +.+....- ........  ..+++.++++++.++.+..||  ..+++......+.......  .
T Consensus         2 ~g~l~~~d~~t--G--~~~W~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d--~~tG~~~W~~~~~~~~~~~--~   72 (238)
T PF13360_consen    2 DGTLSALDPRT--G--KELWSYDL-GPGIGGPVATAVPDGGRVYVASGDGNLYALD--AKTGKVLWRFDLPGPISGA--P   72 (238)
T ss_dssp             TSEEEEEETTT--T--EEEEEEEC-SSSCSSEEETEEEETTEEEEEETTSEEEEEE--TTTSEEEEEEECSSCGGSG--E
T ss_pred             CCEEEEEECCC--C--CEEEEEEC-CCCCCCccceEEEeCCEEEEEcCCCEEEEEE--CCCCCEEEEeeccccccce--e
Confidence            67889999865  4  55555432 11121222  223566777778899999999  8888866555542211111  1


Q ss_pred             EECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEeeCCCeEEEEEe
Q psy11529        108 KWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSA  176 (244)
Q Consensus       108 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~i~i~d~  176 (244)
                        ...+..+++++.++.+..+|..+++..|.......+............++..++.+..++.|..+|+
T Consensus        73 --~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~  139 (238)
T PF13360_consen   73 --VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDP  139 (238)
T ss_dssp             --EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEET
T ss_pred             --eecccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEec
Confidence              2235567777788899999988888755532221111111222233334778888888999999998

...

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.72  E-value=8.1e-06  Score=65.28  Aligned_cols=78  Identities=12%  Similarity=0.043  Sum_probs=56.2

Q ss_pred             cCcceEEEEECCCCCeEEEeeC-CCeEEEEEeecCCCce-------EEEeeecCCCCceeEEEecCCCCEEEEeeCCCeE
Q psy11529        100 INRAATCVKWSPLENKFAAGSG-ARLISVCYFESENDWW-------VAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKV  171 (244)
Q Consensus       100 ~~~~v~~~~~~~~~~~l~~~~~-d~~i~i~d~~~~~~~~-------~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~i  171 (244)
                      -......+.++|||+++++++. +.++.|+|+.+.+...       ....-...........+|.++|+...+-.-|..|
T Consensus       319 VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv  398 (635)
T PRK02888        319 VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQI  398 (635)
T ss_pred             CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCcceEEECCCCCEEEeEeeccee
Confidence            4567788999999999887765 8999999998755311       0001111112345678899999888888889999


Q ss_pred             EEEEee
Q psy11529        172 RVFSAY  177 (244)
Q Consensus       172 ~i~d~~  177 (244)
                      ..|++.
T Consensus       399 ~kwn~~  404 (635)
T PRK02888        399 VKWNIE  404 (635)
T ss_pred             EEEehH
Confidence            999984

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.70  E-value=5.4e-06  Score=64.34  Aligned_cols=183  Identities=11%  Similarity=0.004  Sum_probs=101.5

Q ss_pred             CeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEE--eCC--CCCeEEEEeCCccEEEEeeeCCCCCceeeEEE
Q psy11529         22 QQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGID--WAP--NTNRIVTCSADRNAYVWTQNNDDKKWKPTLVL   97 (244)
Q Consensus        22 ~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~   97 (244)
                      ..++.++.++.|..+|.++  +  +.+..+....... .+.  -+|  .+..++.+..++.+..+|  .++++.......
T Consensus       146 ~~v~v~~~~g~l~a~d~~t--G--~~~W~~~~~~~~~-~~~~~~sp~~~~~~v~~~~~~g~v~ald--~~tG~~~W~~~~  218 (377)
T TIGR03300       146 GLVVVRTNDGRLTALDAAT--G--ERLWTYSRVTPAL-TLRGSASPVIADGGVLVGFAGGKLVALD--LQTGQPLWEQRV  218 (377)
T ss_pred             CEEEEECCCCeEEEEEcCC--C--ceeeEEccCCCce-eecCCCCCEEECCEEEEECCCCEEEEEE--ccCCCEeeeecc
Confidence            3455556677777777765  3  3333332211111 000  011  124567777789999999  778764433221


Q ss_pred             eccC--cc---eEEEEECC--CCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEeeCCCe
Q psy11529         98 LRIN--RA---ATCVKWSP--LENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFK  170 (244)
Q Consensus        98 ~~~~--~~---v~~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~  170 (244)
                      ....  ..   ...+.-+|  .+..+++++.++.+..+|.++++..|...     . .......  .++..+++++.+|.
T Consensus       219 ~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~-----~-~~~~~p~--~~~~~vyv~~~~G~  290 (377)
T TIGR03300       219 ALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRD-----A-SSYQGPA--VDDNRLYVTDADGV  290 (377)
T ss_pred             ccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeec-----c-CCccCce--EeCCEEEEECCCCe
Confidence            1100  00   00011111  24578888889999999998887644332     1 1111222  24567888889999


Q ss_pred             EEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCC
Q psy11529        171 VRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQ  241 (244)
Q Consensus       171 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~  241 (244)
                      +..+|.                  .+++.+.......  .....+...  .+..|++++.+|.|.++|.++
T Consensus       291 l~~~d~------------------~tG~~~W~~~~~~--~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~t  339 (377)
T TIGR03300       291 VVALDR------------------RSGSELWKNDELK--YRQLTAPAV--VGGYLVVGDFEGYLHWLSRED  339 (377)
T ss_pred             EEEEEC------------------CCCcEEEcccccc--CCccccCEE--ECCEEEEEeCCCEEEEEECCC
Confidence            999998                  4555554432110  112222222  456888889999999999765

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG3617|consensus

Probab=98.66  E-value=6.2e-07  Score=72.81  Aligned_cols=70  Identities=16%  Similarity=0.316  Sum_probs=59.1

Q ss_pred             eEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeee
Q psy11529         12 VTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQN   85 (244)
Q Consensus        12 v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~   85 (244)
                      +++++|+|..-.|+.|-.-|.+.+|....  .  +.......|+.+|..+.||++|..++++..-|.+.+|.++
T Consensus        62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~--~--e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNT--T--ETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             hhhhccChHHHHHhhccccceeEEEecCC--c--eeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence            45789999888889988889999999877  2  3333345699999999999999999999999999999864

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=98.62  E-value=6.5e-06  Score=68.04  Aligned_cols=146  Identities=12%  Similarity=0.068  Sum_probs=95.9

Q ss_pred             CeEEEe-cCCCeEEEeeeccCCCcceeeeeeccCCCc-eEEEEeCC-----CCCeEEEEeCCccEEEEeeeCCCCCceee
Q psy11529         22 QQLAFT-PNNQEVHLYQYEKAANDWSQLDVLDGHDLK-VTGIDWAP-----NTNRIVTCSADRNAYVWTQNNDDKKWKPT   94 (244)
Q Consensus        22 ~~l~~~-~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~-----~~~~l~~~~~d~~i~iwd~~~~~~~~~~~   94 (244)
                      ++|+.. ...+.|+-.|++.  +  +.+..+..|... |..++=..     +....+.|-.++.+..||.|+...+....
T Consensus       494 ~mil~~~~~~~~ly~mDLe~--G--KVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~  569 (794)
T PF08553_consen  494 NMILLDPNNPNKLYKMDLER--G--KVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDS  569 (794)
T ss_pred             ceEeecCCCCCceEEEecCC--C--cEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeec
Confidence            344443 3456788888877  6  777777766543 55543221     13345667778899999965544322211


Q ss_pred             -EEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEeeCCCeEEE
Q psy11529         95 -LVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRV  173 (244)
Q Consensus        95 -~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~i~i  173 (244)
                       ...........|++-..+| +||+|+.+|.||+||- .+..   .+..+.+...+|..|+.+.||++++..+ +..|.|
T Consensus       570 ~~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~-~g~~---AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlL  643 (794)
T PF08553_consen  570 QSKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDR-LGKR---AKTALPGLGDPIIGIDVTADGKWILATC-KTYLLL  643 (794)
T ss_pred             cccccccCCCceEEEecCCc-eEEEEeCCCcEEeecc-cchh---hhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEE
Confidence             1111234567788777765 7999999999999983 3322   4555666678999999999999988766 455777


Q ss_pred             EEee
Q psy11529        174 FSAY  177 (244)
Q Consensus       174 ~d~~  177 (244)
                      ++..
T Consensus       644 i~t~  647 (794)
T PF08553_consen  644 IDTL  647 (794)
T ss_pred             EEEe
Confidence            7764

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG1912|consensus

Probab=98.59  E-value=4.2e-06  Score=67.47  Aligned_cols=151  Identities=15%  Similarity=0.184  Sum_probs=112.2

Q ss_pred             eEEEEeCCCCCeEEEEeCCccEEEEeeeCCCCCceeeEEEeccCcceEEEEECCCC------------CeEEEeeCCCeE
Q psy11529         58 VTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLE------------NKFAAGSGARLI  125 (244)
Q Consensus        58 v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~------------~~l~~~~~d~~i  125 (244)
                      -.++.|+|.| +||.|+ ...|.+-|  ..+-+.+  ..+..|+..|+.+.|.|..            -.||++...|.|
T Consensus        18 ~~A~Dw~~~G-LiAygs-hslV~VVD--s~s~q~i--qsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrI   91 (1062)
T KOG1912|consen   18 RNAADWSPSG-LIAYGS-HSLVSVVD--SRSLQLI--QSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRI   91 (1062)
T ss_pred             ccccccCccc-eEEEec-CceEEEEe--hhhhhhh--hccccCccceeEEEeccCCCchhccCccccceeEEeccccCcE
Confidence            5678999976 566665 45788888  5555543  3445688999999998742            247778889999


Q ss_pred             EEEEeecCCCceEEEeeecCCCCceeEEEecC---CC-CEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeE
Q psy11529        126 SVCYFESENDWWVAKHIKKPIKSTITCLDWHP---NN-HLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLV  201 (244)
Q Consensus       126 ~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p---~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (244)
                      .+||......    ......+..++..++|-|   +. ..|+.-.....+.+|+.                  .+|+.+-
T Consensus        92 il~d~~~~s~----~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwnt------------------dtG~k~W  149 (1062)
T KOG1912|consen   92 ILVDFVLASV----INWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNT------------------DTGEKFW  149 (1062)
T ss_pred             EEEEehhhhh----hhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEc------------------cCCceee
Confidence            9999988864    555667778889999987   33 46666677789999998                  6788887


Q ss_pred             EecCCCCCCCCeEEEEEec-CCCEEEEeeCCCcEEEEeC
Q psy11529        202 ELNNSSSGGGWIHSVAFSK-DGNKLCWTSHDGSINVRMS  239 (244)
Q Consensus       202 ~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vwd~  239 (244)
                      .....   .....++.+.| |.+.+..-+..|.+.+-+.
T Consensus       150 k~~ys---~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~  185 (1062)
T KOG1912|consen  150 KYDYS---HEILSCFRVDPFDSRHFCVLGSKGFVLSCKD  185 (1062)
T ss_pred             ccccC---CcceeeeeeCCCCcceEEEEccCceEEEEec
Confidence            77665   66778899998 7777777777777766554

>KOG3621|consensus

Probab=98.59  E-value=1.3e-06  Score=69.24  Aligned_cols=121  Identities=18%  Similarity=0.136  Sum_probs=90.3

Q ss_pred             CCceEEEEeCCCCCeEEEEeCCccEEEEeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCC
Q psy11529         55 DLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESEN  134 (244)
Q Consensus        55 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~  134 (244)
                      ...|.--+++..+++++.|+.-|.+++|+  ...+.. ......+..+.+..+..+++..++|.|+..|.|.++-++...
T Consensus        33 ~~~v~lTc~dst~~~l~~GsS~G~lyl~~--R~~~~~-~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~  109 (726)
T KOG3621|consen   33 PARVKLTCVDATEEYLAMGSSAGSVYLYN--RHTGEM-RKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKEL  109 (726)
T ss_pred             cceEEEEEeecCCceEEEecccceEEEEe--cCchhh-hcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccC
Confidence            44455555677899999999999999999  454442 223223345667778889999999999999999999888754


Q ss_pred             Cce--EEEeeecCCCCceeEEEecCCCCEEEEeeCCCeEEEEEeee
Q psy11529        135 DWW--VAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYI  178 (244)
Q Consensus       135 ~~~--~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~i~i~d~~~  178 (244)
                      ...  ........|+..|++++|++++..+++|...|+|.+-.+..
T Consensus       110 p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  110 PRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             CCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence            311  11122233678999999999999999999999999988844

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.57  E-value=2.8e-05  Score=62.38  Aligned_cols=85  Identities=14%  Similarity=0.000  Sum_probs=56.3

Q ss_pred             CCceeEEEecCCCCEEEEeeC-CCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEE
Q psy11529        147 KSTITCLDWHPNNHLLGCGST-DFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKL  225 (244)
Q Consensus       147 ~~~v~~~~~~p~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  225 (244)
                      ......+.++|||+++++++. +.++.|+|+...+.......      ........+...    .......+|.++|...
T Consensus       320 GKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~------~~~~~vvaevev----GlGPLHTaFDg~G~ay  389 (635)
T PRK02888        320 PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKI------KPRDAVVAEPEL----GLGPLHTAFDGRGNAY  389 (635)
T ss_pred             CCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccC------CccceEEEeecc----CCCcceEEECCCCCEE
Confidence            356678999999998877664 88999999954321100000      011223333333    3444567899999877


Q ss_pred             EEeeCCCcEEEEeCCC
Q psy11529        226 CWTSHDGSINVRMSQQ  241 (244)
Q Consensus       226 ~~~~~dg~i~vwd~~~  241 (244)
                      .+---|..|..||+.+
T Consensus       390 tslf~dsqv~kwn~~~  405 (635)
T PRK02888        390 TTLFLDSQIVKWNIEA  405 (635)
T ss_pred             EeEeecceeEEEehHH
Confidence            7888899999999875

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.55  E-value=1e-05  Score=62.16  Aligned_cols=95  Identities=17%  Similarity=0.213  Sum_probs=61.0

Q ss_pred             cCCCCeEEEe---------cCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCCC
Q psy11529         18 NNTRQQLAFT---------PNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDD   88 (244)
Q Consensus        18 ~~~~~~l~~~---------~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~   88 (244)
                      |||+++++..         +..+.+.|||+++  +   ....+......+....|||+|+.++... ++.|.+++  ..+
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~--~---~~~~l~~~~~~~~~~~~sP~g~~~~~v~-~~nly~~~--~~~   72 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIET--G---EITPLTPPPPKLQDAKWSPDGKYIAFVR-DNNLYLRD--LAT   72 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTT--T---EEEESS-EETTBSEEEE-SSSTEEEEEE-TTEEEEES--STT
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCC--C---ceEECcCCccccccceeecCCCeeEEEe-cCceEEEE--CCC
Confidence            6888887774         2346799999988  3   3334433367788999999999998875 67899998  555


Q ss_pred             CCceeeEEEec-------c---------CcceEEEEECCCCCeEEEeeC
Q psy11529         89 KKWKPTLVLLR-------I---------NRAATCVKWSPLENKFAAGSG  121 (244)
Q Consensus        89 ~~~~~~~~~~~-------~---------~~~v~~~~~~~~~~~l~~~~~  121 (244)
                      +..... +..+       .         -+.-..+-||||+++||....
T Consensus        73 ~~~~~l-T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~  120 (353)
T PF00930_consen   73 GQETQL-TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRF  120 (353)
T ss_dssp             SEEEES-ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEE
T ss_pred             CCeEEe-ccccceeEEcCccceeccccccccccceEECCCCCEEEEEEE
Confidence            532221 1111       0         122356889999999887643

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=98.55  E-value=0.00019  Score=55.74  Aligned_cols=198  Identities=17%  Similarity=0.125  Sum_probs=124.5

Q ss_pred             EEEEEcCCCCe-EEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeC---CccEEEEeeeCCC
Q psy11529         13 TTHAWNNTRQQ-LAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSA---DRNAYVWTQNNDD   88 (244)
Q Consensus        13 ~~~~~~~~~~~-l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~iwd~~~~~   88 (244)
                      ..++.++.+.. ++....++.|.+.|...  .  ....... -...-..++++|+++.+..+..   ++++.+.|  ..+
T Consensus        77 ~~i~v~~~~~~vyv~~~~~~~v~vid~~~--~--~~~~~~~-vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid--~~t  149 (381)
T COG3391          77 AGVAVNPAGNKVYVTTGDSNTVSVIDTAT--N--TVLGSIP-VGLGPVGLAVDPDGKYVYVANAGNGNNTVSVID--AAT  149 (381)
T ss_pred             cceeeCCCCCeEEEecCCCCeEEEEcCcc--c--ceeeEee-eccCCceEEECCCCCEEEEEecccCCceEEEEe--CCC
Confidence            46677887774 44445568999999665  2  2332322 2225578999999987776654   67888888  666


Q ss_pred             CCceeeEEEeccCcceEEEEECCCCCeEEEee-CCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEeeC
Q psy11529         89 KKWKPTLVLLRINRAATCVKWSPLENKFAAGS-GARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGST  167 (244)
Q Consensus        89 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~  167 (244)
                      .+....  ......+ ..+++.|+|+.++... .++.+.+.|.......................+.++|+|+.+.....
T Consensus       150 ~~~~~~--~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~  226 (381)
T COG3391         150 NKVTAT--IPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVAND  226 (381)
T ss_pred             CeEEEE--EecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEec
Confidence            664433  2222233 8999999999777665 68899999866654310000001122345678999999996665544


Q ss_pred             C---CeEEEEEeeecccccCCCCCCCCccccccceeEE-ecCCCCCCCCeEEEEEecCCCEEEEeeC-CCcEEEEeCCC
Q psy11529        168 D---FKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVE-LNNSSSGGGWIHSVAFSKDGNKLCWTSH-DGSINVRMSQQ  241 (244)
Q Consensus       168 d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~vwd~~~  241 (244)
                      .   +.+...|.                  ..+..... .....  . ....+..+|+|+++.+... .+.+.+-|..+
T Consensus       227 ~~~~~~v~~id~------------------~~~~v~~~~~~~~~--~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~  284 (381)
T COG3391         227 GSGSNNVLKIDT------------------ATGNVTATDLPVGS--G-APRGVAVDPAGKAAYVANSQGGTVSVIDGAT  284 (381)
T ss_pred             cCCCceEEEEeC------------------CCceEEEecccccc--C-CCCceeECCCCCEEEEEecCCCeEEEEeCCC
Confidence            3   58888887                  33444333 22210  2 4567889999998877743 46777777654

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.54  E-value=3.9e-05  Score=59.29  Aligned_cols=202  Identities=10%  Similarity=0.060  Sum_probs=105.2

Q ss_pred             eEEeCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeecc------CCCceEEEEeCC-----CC---Ce
Q psy11529          4 VYSFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDG------HDLKVTGIDWAP-----NT---NR   69 (244)
Q Consensus         4 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~------~~~~v~~~~~~~-----~~---~~   69 (244)
                      +.+...++|++++.|.- -++|.|..+|.+.|.|+++  ...-....+..      ....|+++.|+-     |+   -.
T Consensus        81 l~~~~~g~vtal~~S~i-GFvaigy~~G~l~viD~RG--PavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~  157 (395)
T PF08596_consen   81 LLDAKQGPVTALKNSDI-GFVAIGYESGSLVVIDLRG--PAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSIC  157 (395)
T ss_dssp             EE---S-SEEEEEE-BT-SEEEEEETTSEEEEEETTT--TEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEE
T ss_pred             heeccCCcEeEEecCCC-cEEEEEecCCcEEEEECCC--CeEEeeccccccccccccccCeeEEEEEEEecCCCcccceE
Confidence            34455899999999854 4899999999999999988  31112222222      245688888862     33   36


Q ss_pred             EEEEeCCccEEEEeeeCC-CCCceeeEEE--eccCcceEEEE-ECCC-C-------------------CeEEEeeCCCeE
Q psy11529         70 IVTCSADRNAYVWTQNND-DKKWKPTLVL--LRINRAATCVK-WSPL-E-------------------NKFAAGSGARLI  125 (244)
Q Consensus        70 l~~~~~d~~i~iwd~~~~-~~~~~~~~~~--~~~~~~v~~~~-~~~~-~-------------------~~l~~~~~d~~i  125 (244)
                      ++.|...|.+.+|.+... .+.+...+.-  ..+.+.+..+. ++.+ |                   ..+++...+..+
T Consensus       158 L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~i  237 (395)
T PF08596_consen  158 LLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDI  237 (395)
T ss_dssp             EEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEE
T ss_pred             EEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccce
Confidence            788899999999996322 2332222211  13445555544 3222 1                   124444456778


Q ss_pred             EEEEeecCCCceEEEeeecCCCCceeEEEec-----CCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCcccccccee
Q psy11529        126 SVCYFESENDWWVAKHIKKPIKSTITCLDWH-----PNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCL  200 (244)
Q Consensus       126 ~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~-----p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  200 (244)
                      +++..-+.+.   ..... ........+.+-     ..+..|++-..+|.+++|.+                  +..+.+
T Consensus       238 rv~~~~~~k~---~~K~~-~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SL------------------P~Lkei  295 (395)
T PF08596_consen  238 RVFKPPKSKG---AHKSF-DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSL------------------PSLKEI  295 (395)
T ss_dssp             EEE-TT---E---EEEE--SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEET------------------TT--EE
T ss_pred             EEEeCCCCcc---cceee-ccccccceEEEEeecccCCceEEEEEECCCcEEEEEC------------------CCchHh
Confidence            9987766553   22222 222233344453     24567888889999999999                  666666


Q ss_pred             EEecCCCC-CCCCeEEEEEecCCCEEEEeeC
Q psy11529        201 VELNNSSS-GGGWIHSVAFSKDGNKLCWTSH  230 (244)
Q Consensus       201 ~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~  230 (244)
                      ........ ....+....++++|..++..+.
T Consensus       296 ~~~~l~~~~d~~~~~~ssis~~Gdi~~~~gp  326 (395)
T PF08596_consen  296 KSVSLPPPLDSRRLSSSSISRNGDIFYWTGP  326 (395)
T ss_dssp             EEEE-SS---HHHHTT-EE-TTS-EEEE-SS
T ss_pred             hcccCCCccccccccccEECCCCCEEEEeCc
Confidence            66554210 0234556778889987766653

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>KOG1832|consensus

Probab=98.47  E-value=2.5e-07  Score=75.42  Aligned_cols=162  Identities=12%  Similarity=0.053  Sum_probs=113.3

Q ss_pred             eeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCC--
Q psy11529         46 SQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGAR--  123 (244)
Q Consensus        46 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~--  123 (244)
                      +....++.|...-+|++|+-..++|+.|+..|.|++++  +.+|....  ....|.+.++.+.-+.+|..+++.+.-.  
T Consensus      1092 r~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~n--v~sG~~e~--s~ncH~SavT~vePs~dgs~~Ltsss~S~P 1167 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFN--VSSGSMEE--SVNCHQSAVTLVEPSVDGSTQLTSSSSSSP 1167 (1516)
T ss_pred             ccchhhhccccceeeEEeecCCceEEeeeccceEEEEE--ccCccccc--cccccccccccccccCCcceeeeeccccCc
Confidence            45566778889999999999999999999999999999  77776433  3367999999999999998877765533  


Q ss_pred             eEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEe
Q psy11529        124 LISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVEL  203 (244)
Q Consensus       124 ~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (244)
                      -..+|++.....   ....+    ..-.++.|+...+.-+.|+.-....+||+.                  ++..+.++
T Consensus      1168 lsaLW~~~s~~~---~~Hsf----~ed~~vkFsn~~q~r~~gt~~d~a~~YDvq------------------T~~~l~ty 1222 (1516)
T KOG1832|consen 1168 LSALWDASSTGG---PRHSF----DEDKAVKFSNSLQFRALGTEADDALLYDVQ------------------TCSPLQTY 1222 (1516)
T ss_pred             hHHHhccccccC---ccccc----cccceeehhhhHHHHHhcccccceEEEecc------------------cCcHHHHh
Confidence            466888876433   22222    244678888766555666666678999994                  44444332


Q ss_pred             -cCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCC
Q psy11529        204 -NNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQ  241 (244)
Q Consensus       204 -~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~  241 (244)
                       .+.-.....-+.+.|+|+.++++   .||  .+||++.
T Consensus      1223 lt~~~~~~y~~n~a~FsP~D~LIl---ndG--vLWDvR~ 1256 (1516)
T KOG1832|consen 1223 LTDTVTSSYSNNLAHFSPCDTLIL---NDG--VLWDVRI 1256 (1516)
T ss_pred             cCcchhhhhhccccccCCCcceEe---eCc--eeeeecc
Confidence             11100022336788999998887   444  4788764

>KOG1008|consensus

Probab=98.46  E-value=3.3e-08  Score=77.33  Aligned_cols=164  Identities=13%  Similarity=0.202  Sum_probs=102.6

Q ss_pred             CCCceEEEEEcC-CCCeEEEec----CCCeEEEeeeccCCCcceeeeeecc-CCCceEEEEeCCCCCeEEEEeCCccEEE
Q psy11529          8 GINPVTTHAWNN-TRQQLAFTP----NNQEVHLYQYEKAANDWSQLDVLDG-HDLKVTGIDWAPNTNRIVTCSADRNAYV   81 (244)
Q Consensus         8 ~~~~v~~~~~~~-~~~~l~~~~----~d~~v~v~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~i   81 (244)
                      +..+.++++|++ |.+.||+|-    .|..+.|||+...-..++....+.+ ......+++|-.+.+.+.+|.....+.+
T Consensus       101 ~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~i  180 (783)
T KOG1008|consen  101 YARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHI  180 (783)
T ss_pred             ccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccchhhh
Confidence            357889999998 667787773    4678999998761001122222332 3445668889888889999998999999


Q ss_pred             EeeeCCCCCceeeEEEeccCcceEEEEECC-CCCeEEEeeCCCeEEEEE-eecCCC-ceEEEeeecCCCCceeEEEecCC
Q psy11529         82 WTQNNDDKKWKPTLVLLRINRAATCVKWSP-LENKFAAGSGARLISVCY-FESEND-WWVAKHIKKPIKSTITCLDWHPN  158 (244)
Q Consensus        82 wd~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i~d-~~~~~~-~~~~~~~~~~~~~~v~~~~~~p~  158 (244)
                      +|+  +..... ..  .-....+..+...| .++++++-. |+.+.+|| .+.-+. ..............+..++|+|.
T Consensus       181 fdl--Rqs~~~-~~--svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPt  254 (783)
T KOG1008|consen  181 FDL--RQSLDS-VS--SVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPT  254 (783)
T ss_pred             hhh--hhhhhh-hh--hhhhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccC
Confidence            994  422110 11  11234566777888 567776655 99999999 333221 00011111112236899999995


Q ss_pred             CC-EEEE-eeCCCeEEEEEee
Q psy11529        159 NH-LLGC-GSTDFKVRVFSAY  177 (244)
Q Consensus       159 ~~-~l~~-~~~dg~i~i~d~~  177 (244)
                      .. ++++ ..+.++|++||+.
T Consensus       255 rtglla~l~RdS~tIrlydi~  275 (783)
T KOG1008|consen  255 RTGLLAVLSRDSITIRLYDIC  275 (783)
T ss_pred             CcchhhhhccCcceEEEeccc
Confidence            43 4444 4456799999985

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=98.43  E-value=0.00031  Score=54.98  Aligned_cols=187  Identities=12%  Similarity=0.111  Sum_probs=97.0

Q ss_pred             EEEcCCCCeEEEecCC----------C-eEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEe
Q psy11529         15 HAWNNTRQQLAFTPNN----------Q-EVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWT   83 (244)
Q Consensus        15 ~~~~~~~~~l~~~~~d----------~-~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd   83 (244)
                      ++.+|.|..+|....+          . .|+||+..+     +++..+.--.+.+.++.|+.+. .|+....||.+++||
T Consensus        34 va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~sG-----~ll~~i~w~~~~iv~~~wt~~e-~LvvV~~dG~v~vy~  107 (410)
T PF04841_consen   34 VAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSSG-----KLLSSIPWDSGRIVGMGWTDDE-ELVVVQSDGTVRVYD  107 (410)
T ss_pred             EEEcCCCceEEEEecCcccccccCCCCcEEEEECCCC-----CEeEEEEECCCCEEEEEECCCC-eEEEEEcCCEEEEEe
Confidence            4556666666655332          1 588888877     4555544334899999998854 455666899999999


Q ss_pred             eeCCCCCceeeEEEeccCcce-----EEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEee-ecC------C-CCce
Q psy11529         84 QNNDDKKWKPTLVLLRINRAA-----TCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHI-KKP------I-KSTI  150 (244)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~------~-~~~v  150 (244)
                        .. |+....+........|     ....+..+|  ++.-..++.+.+  ++........... ..+      + ....
T Consensus       108 --~~-G~~~fsl~~~i~~~~v~e~~i~~~~~~~~G--ivvLt~~~~~~~--v~n~~~~~~~~~~~~~p~~~~~~~~~~~~  180 (410)
T PF04841_consen  108 --LF-GEFQFSLGEEIEEEKVLECRIFAIWFYKNG--IVVLTGNNRFYV--VNNIDEPVKLRRLPEIPGLWTKFHWWPSW  180 (410)
T ss_pred             --CC-CceeechhhhccccCcccccccccccCCCC--EEEECCCCeEEE--EeCccccchhhccccCCCccccccccccc
Confidence              43 3321111100111122     222333344  333344454443  3332210000000 000      0 0001


Q ss_pred             eE-EEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEee
Q psy11529        151 TC-LDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTS  229 (244)
Q Consensus       151 ~~-~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~  229 (244)
                      .. ..++.+....+....++.+.+.+-                  ...+.   +..    .+++..++.||+|++||.-.
T Consensus       181 ~~i~~l~~~~~~~i~~~~g~~i~~i~~------------------~~~~~---i~~----~~~i~~iavSpng~~iAl~t  235 (410)
T PF04841_consen  181 TVIPLLSSDRVVEILLANGETIYIIDE------------------NSFKQ---IDS----DGPIIKIAVSPNGKFIALFT  235 (410)
T ss_pred             ccceEeecCcceEEEEecCCEEEEEEc------------------ccccc---ccC----CCCeEEEEECCCCCEEEEEE
Confidence            11 234444444444455555654443                  11111   222    46899999999999999999


Q ss_pred             CCCcEEEEeC
Q psy11529        230 HDGSINVRMS  239 (244)
Q Consensus       230 ~dg~i~vwd~  239 (244)
                      .+|.+.+.+.
T Consensus       236 ~~g~l~v~ss  245 (410)
T PF04841_consen  236 DSGNLWVVSS  245 (410)
T ss_pred             CCCCEEEEEC
Confidence            9999888753

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG2114|consensus

Probab=98.42  E-value=0.00022  Score=58.50  Aligned_cols=151  Identities=7%  Similarity=0.033  Sum_probs=98.3

Q ss_pred             CeEEEecCCC-----eEEEeeeccC-CCc-ceeee--eecc-----CCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCC
Q psy11529         22 QQLAFTPNNQ-----EVHLYQYEKA-AND-WSQLD--VLDG-----HDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNND   87 (244)
Q Consensus        22 ~~l~~~~~d~-----~v~v~~~~~~-~~~-~~~~~--~~~~-----~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~   87 (244)
                      .+|++-+.|+     .|+||+++.. .++ +.+..  .+..     ...++.+++.+.+-+.+|.|-.+|.|..+.=+..
T Consensus        78 ~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~  157 (933)
T KOG2114|consen   78 NFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDIL  157 (933)
T ss_pred             eEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcch
Confidence            5666665543     5999998652 122 33441  1222     2567889999999889999999999998851111


Q ss_pred             CCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEeeC
Q psy11529         88 DKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGST  167 (244)
Q Consensus        88 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~  167 (244)
                      ..+-...........+|+.+++..+++.++.+.....|.+|.+....+   .......+...+.|..+++....+++++.
T Consensus       158 RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p---~~~~ld~~G~~lnCss~~~~t~qfIca~~  234 (933)
T KOG2114|consen  158 RDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTP---SLKVLDNNGISLNCSSFSDGTYQFICAGS  234 (933)
T ss_pred             hccccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCc---ceeeeccCCccceeeecCCCCccEEEecC
Confidence            111112222344578899999998887744444456788998885442   34445667788999999986654555543


Q ss_pred             CCeEEEEEe
Q psy11529        168 DFKVRVFSA  176 (244)
Q Consensus       168 dg~i~i~d~  176 (244)
                       ..+.+||.
T Consensus       235 -e~l~fY~s  242 (933)
T KOG2114|consen  235 -EFLYFYDS  242 (933)
T ss_pred             -ceEEEEcC
Confidence             45899997

>KOG4640|consensus

Probab=98.41  E-value=2.6e-06  Score=66.94  Aligned_cols=95  Identities=13%  Similarity=0.179  Sum_probs=77.4

Q ss_pred             CCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceE-EEEeCCCCCeEEEEeCCccEEEEeeeCC
Q psy11529          9 INPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVT-GIDWAPNTNRIVTCSADRNAYVWTQNND   87 (244)
Q Consensus         9 ~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~d~~i~iwd~~~~   87 (244)
                      .-.|.-+.|+|.-.+||++..+|.|.+..+.-     +.+.++.-|...++ +++|.|||+.|+.|-.||+|++.|  .+
T Consensus        20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n~-----qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~D--ve   92 (665)
T KOG4640|consen   20 PINIKRIEWNPKMDLIATRTEKGELLIHRLNW-----QRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHD--VE   92 (665)
T ss_pred             ccceEEEEEcCccchhheeccCCcEEEEEecc-----ceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEE--cc
Confidence            45677899999999999999999999999876     78888887777777 999999999999999999999999  67


Q ss_pred             CCCceeeEEEeccCcceEEEEECC
Q psy11529         88 DKKWKPTLVLLRINRAATCVKWSP  111 (244)
Q Consensus        88 ~~~~~~~~~~~~~~~~v~~~~~~~  111 (244)
                      ++...... .......+.++.|.+
T Consensus        93 ~~~~l~~~-~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   93 KGGRLVSF-LFSVETDISKGIWDR  115 (665)
T ss_pred             CCCceecc-ccccccchheeeccc
Confidence            77643332 122356677788864

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.40  E-value=0.0002  Score=55.96  Aligned_cols=177  Identities=9%  Similarity=0.012  Sum_probs=101.9

Q ss_pred             eEEEecCCCeEEEeeeccCCCcceeeeeecc--CC--C---ceEEEEeCC--CCCeEEEEeCCccEEEEeeeCCCCCcee
Q psy11529         23 QLAFTPNNQEVHLYQYEKAANDWSQLDVLDG--HD--L---KVTGIDWAP--NTNRIVTCSADRNAYVWTQNNDDKKWKP   93 (244)
Q Consensus        23 ~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~--~~--~---~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~   93 (244)
                      .++.++.++.+..++..+  +  +.......  ..  .   ....+.-+|  .+..++.++.++.+..+|  ..+++...
T Consensus       207 ~v~~~~~~g~v~a~d~~~--G--~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald--~~tG~~~W  280 (394)
T PRK11138        207 GAIVGGDNGRVSAVLMEQ--G--QLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALD--LRSGQIVW  280 (394)
T ss_pred             EEEEEcCCCEEEEEEccC--C--hhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEE--CCCCCEEE
Confidence            455566678888888766  3  22222110  00  0   011111233  345677777889999999  78887443


Q ss_pred             eEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEeeCCCeEEE
Q psy11529         94 TLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRV  173 (244)
Q Consensus        94 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~i~i  173 (244)
                      ....    .....+..  .+..++.++.++.+..+|..+++..|......   .....+...  .+..++.++.+|.++.
T Consensus       281 ~~~~----~~~~~~~~--~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~---~~~~~sp~v--~~g~l~v~~~~G~l~~  349 (394)
T PRK11138        281 KREY----GSVNDFAV--DGGRIYLVDQNDRVYALDTRGGVELWSQSDLL---HRLLTAPVL--YNGYLVVGDSEGYLHW  349 (394)
T ss_pred             eecC----CCccCcEE--ECCEEEEEcCCCeEEEEECCCCcEEEcccccC---CCcccCCEE--ECCEEEEEeCCCEEEE
Confidence            3321    11111222  45678888889999999998876533221111   111222222  2457788899999999


Q ss_pred             EEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeE-EEEEecCCCEEEEeeCCCcEEEEeC
Q psy11529        174 FSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIH-SVAFSKDGNKLCWTSHDGSINVRMS  239 (244)
Q Consensus       174 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~~~~~dg~i~vwd~  239 (244)
                      .|.                  .+++.+...+..   ...+. ...+  .+..|+.++.||.|+.+++
T Consensus       350 ld~------------------~tG~~~~~~~~~---~~~~~s~P~~--~~~~l~v~t~~G~l~~~~~  393 (394)
T PRK11138        350 INR------------------EDGRFVAQQKVD---SSGFLSEPVV--ADDKLLIQARDGTVYAITR  393 (394)
T ss_pred             EEC------------------CCCCEEEEEEcC---CCcceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence            998                  667777666543   22222 2222  2446788899999988765

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.35  E-value=6.4e-05  Score=58.96  Aligned_cols=141  Identities=21%  Similarity=0.321  Sum_probs=80.9

Q ss_pred             CCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEE-Eeec
Q psy11529         54 HDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVC-YFES  132 (244)
Q Consensus        54 ~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~-d~~~  132 (244)
                      .......+.++|+|+.++.+ .||...|+.  ....+  .     ...+......|.+. +.+|+-...+.|.|+ +++.
T Consensus        31 ~~~~p~~ls~npngr~v~V~-g~geY~iyt--~~~~r--~-----k~~G~g~~~vw~~~-n~yAv~~~~~~I~I~kn~~~   99 (443)
T PF04053_consen   31 CEIYPQSLSHNPNGRFVLVC-GDGEYEIYT--ALAWR--N-----KAFGSGLSFVWSSR-NRYAVLESSSTIKIYKNFKN   99 (443)
T ss_dssp             -SS--SEEEE-TTSSEEEEE-ETTEEEEEE--TTTTE--E-----EEEEE-SEEEE-TS-SEEEEE-TTS-EEEEETTEE
T ss_pred             CCcCCeeEEECCCCCEEEEE-cCCEEEEEE--ccCCc--c-----cccCceeEEEEecC-ccEEEEECCCeEEEEEcCcc
Confidence            44557889999999998885 477888887  33322  1     12355567889984 557777778889985 3333


Q ss_pred             CCCceEEEeeecCCCCceeEEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCC
Q psy11529        133 ENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGW  212 (244)
Q Consensus       133 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (244)
                      ...    .....+  ..+..+-.   |.+|...+.+ .|.+||.                  .+++.+..+...     +
T Consensus       100 ~~~----k~i~~~--~~~~~If~---G~LL~~~~~~-~i~~yDw------------------~~~~~i~~i~v~-----~  146 (443)
T PF04053_consen  100 EVV----KSIKLP--FSVEKIFG---GNLLGVKSSD-FICFYDW------------------ETGKLIRRIDVS-----A  146 (443)
T ss_dssp             -TT---------S--S-EEEEE----SSSEEEEETT-EEEEE-T------------------TT--EEEEESS------E
T ss_pred             ccc----eEEcCC--cccceEEc---CcEEEEECCC-CEEEEEh------------------hHcceeeEEecC-----C
Confidence            221    111111  12333332   8777776554 8999999                  778888888652     3


Q ss_pred             eEEEEEecCCCEEEEeeCCCcEEEEeC
Q psy11529        213 IHSVAFSKDGNKLCWTSHDGSINVRMS  239 (244)
Q Consensus       213 v~~~~~s~~~~~l~~~~~dg~i~vwd~  239 (244)
                      |..+.|+++|.+++..+.+ .+.|++.
T Consensus       147 vk~V~Ws~~g~~val~t~~-~i~il~~  172 (443)
T PF04053_consen  147 VKYVIWSDDGELVALVTKD-SIYILKY  172 (443)
T ss_dssp             -EEEEE-TTSSEEEEE-S--SEEEEEE
T ss_pred             CcEEEEECCCCEEEEEeCC-eEEEEEe
Confidence            8999999999999988765 6666553

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.34  E-value=0.00064  Score=52.36  Aligned_cols=191  Identities=14%  Similarity=0.161  Sum_probs=97.6

Q ss_pred             CceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccC----------------CCceEEEEeCCCCCeEEEE
Q psy11529         10 NPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGH----------------DLKVTGIDWAPNTNRIVTC   73 (244)
Q Consensus        10 ~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~----------------~~~v~~~~~~~~~~~l~~~   73 (244)
                      ..+....|||+|+.+|... ++.|.+.+..+  +. ....+..+-                -+.-..+-||||+++|+..
T Consensus        43 ~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~--~~-~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~  118 (353)
T PF00930_consen   43 PKLQDAKWSPDGKYIAFVR-DNNLYLRDLAT--GQ-ETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFL  118 (353)
T ss_dssp             TTBSEEEE-SSSTEEEEEE-TTEEEEESSTT--SE-EEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEE
T ss_pred             cccccceeecCCCeeEEEe-cCceEEEECCC--CC-eEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEE
Confidence            5678899999999999985 57899998866  31 111122220                1122568899999998866


Q ss_pred             eCC-cc-----------------------------------EEEEeeeCCCCCceeeEEE---eccCcceEEEEECCCCC
Q psy11529         74 SAD-RN-----------------------------------AYVWTQNNDDKKWKPTLVL---LRINRAATCVKWSPLEN  114 (244)
Q Consensus        74 ~~d-~~-----------------------------------i~iwd~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~  114 (244)
                      ..| ..                                   +.++|  +.+++.......   ......+..+.|.++++
T Consensus       119 ~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~--~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~  196 (353)
T PF00930_consen  119 RFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVD--LASGKTTELDPPNSLNPQDYYLTRVGWSPDGK  196 (353)
T ss_dssp             EEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEE--SSSTCCCEE---HHHHTSSEEEEEEEEEETTE
T ss_pred             EECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEE--CCCCcEEEeeeccccCCCccCcccceecCCCc
Confidence            432 22                                   22233  333332211111   12344577889999888


Q ss_pred             eEEEe--eCC---CeEEEEEeecCCCceEEEeeecCCCCceeEEEec-CCCC-EEEEeeCCCeEEEEEeeecccccCCCC
Q psy11529        115 KFAAG--SGA---RLISVCYFESENDWWVAKHIKKPIKSTITCLDWH-PNNH-LLGCGSTDFKVRVFSAYIKDIESAPQS  187 (244)
Q Consensus       115 ~l~~~--~~d---~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~-p~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~  187 (244)
                      .|+..  ..+   ..+.++|..++............--.......|. +++. ++.....+|--+||-+.          
T Consensus       197 ~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~----------  266 (353)
T PF00930_consen  197 RLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYD----------  266 (353)
T ss_dssp             EEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEE----------
T ss_pred             EEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEc----------
Confidence            44443  332   2456666666554222222211111223355554 6665 44455567754444442          


Q ss_pred             CCCCccccccceeEEecCCCCCCCCeEE-EEEecCCCEEE
Q psy11529        188 TNWGSKSTLGNCLVELNNSSSGGGWIHS-VAFSKDGNKLC  226 (244)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~s~~~~~l~  226 (244)
                             ..+.....+...   ...|.. +.++++++.|+
T Consensus       267 -------~~~~~~~~lT~G---~~~V~~i~~~d~~~~~iy  296 (353)
T PF00930_consen  267 -------LDGGKPRQLTSG---DWEVTSILGWDEDNNRIY  296 (353)
T ss_dssp             -------TTSSEEEESS-S---SS-EEEEEEEECTSSEEE
T ss_pred             -------ccccceeccccC---ceeecccceEcCCCCEEE
Confidence                   223333344433   555644 67888777544

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=98.33  E-value=0.00062  Score=51.72  Aligned_cols=194  Identities=14%  Similarity=0.158  Sum_probs=111.3

Q ss_pred             CCeEEEecC---------C-CeEEEeeeccC-C--CcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCC
Q psy11529         21 RQQLAFTPN---------N-QEVHLYQYEKA-A--NDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNND   87 (244)
Q Consensus        21 ~~~l~~~~~---------d-~~v~v~~~~~~-~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~   87 (244)
                      ..+|++|+.         . |.|.++++... .  .+++.+.... .+++|.+++-- ++. |+.+. .+.|.+|++  .
T Consensus        42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~-~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l--~  115 (321)
T PF03178_consen   42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTE-VKGPVTAICSF-NGR-LVVAV-GNKLYVYDL--D  115 (321)
T ss_dssp             SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEE-ESS-EEEEEEE-TTE-EEEEE-TTEEEEEEE--E
T ss_pred             cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEe-ecCcceEhhhh-CCE-EEEee-cCEEEEEEc--c
Confidence            457777742         2 88999999761 1  1233333333 57889988765 344 44443 578999994  4


Q ss_pred             CCC-ceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEee
Q psy11529         88 DKK-WKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGS  166 (244)
Q Consensus        88 ~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~  166 (244)
                      ..+ ...... ......+.++...  ++++++|+....+.++.++..... ............++++.+-++++.++.+.
T Consensus       116 ~~~~l~~~~~-~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~~-l~~va~d~~~~~v~~~~~l~d~~~~i~~D  191 (321)
T PF03178_consen  116 NSKTLLKKAF-YDSPFYITSLSVF--KNYILVGDAMKSVSLLRYDEENNK-LILVARDYQPRWVTAAEFLVDEDTIIVGD  191 (321)
T ss_dssp             TTSSEEEEEE-E-BSSSEEEEEEE--TTEEEEEESSSSEEEEEEETTTE--EEEEEEESS-BEEEEEEEE-SSSEEEEEE
T ss_pred             Ccccchhhhe-ecceEEEEEEecc--ccEEEEEEcccCEEEEEEEccCCE-EEEEEecCCCccEEEEEEecCCcEEEEEc
Confidence            444 333332 2233456666554  569999999888999887764321 12222233356789999987777899999


Q ss_pred             CCCeEEEEEeeecccccCCCCCCCCcccc-ccceeEEecCCCCCCCCeEEE---EEecC--CC------EEEEeeCCCcE
Q psy11529        167 TDFKVRVFSAYIKDIESAPQSTNWGSKST-LGNCLVELNNSSSGGGWIHSV---AFSKD--GN------KLCWTSHDGSI  234 (244)
Q Consensus       167 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~---~~s~~--~~------~l~~~~~dg~i  234 (244)
                      .+|.+.++...........        .. .-.....+..    +..|+++   .+.|.  +.      .++.++.+|.|
T Consensus       192 ~~gnl~~l~~~~~~~~~~~--------~~~~L~~~~~f~l----g~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~I  259 (321)
T PF03178_consen  192 KDGNLFVLRYNPEIPNSRD--------GDPKLERISSFHL----GDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSI  259 (321)
T ss_dssp             TTSEEEEEEE-SS-SSTTT--------TTTBEEEEEEEE-----SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-E
T ss_pred             CCCeEEEEEECCCCccccc--------ccccceeEEEEEC----CCccceEEEEEeeecCCCCcccccceEEEEecCCEE
Confidence            9999999988421111000        00 1223334443    5667777   44452  22      47788889988


Q ss_pred             EE
Q psy11529        235 NV  236 (244)
Q Consensus       235 ~v  236 (244)
                      .+
T Consensus       260 g~  261 (321)
T PF03178_consen  260 GV  261 (321)
T ss_dssp             EE
T ss_pred             EE
Confidence            74

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PRK13616 lipoprotein LpqB; Provisional

Probab=98.31  E-value=0.00029  Score=57.55  Aligned_cols=153  Identities=16%  Similarity=0.224  Sum_probs=86.9

Q ss_pred             CceEEEEEcCCCCeEEEec------CCC--eEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCcc-EE
Q psy11529         10 NPVTTHAWNNTRQQLAFTP------NNQ--EVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRN-AY   80 (244)
Q Consensus        10 ~~v~~~~~~~~~~~l~~~~------~d~--~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~-i~   80 (244)
                      ..+.+.+++|+|+.+++..      .|.  .|.+++..+     .......+  .....-.|+|+|..+.+...... ++
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg-----~~~~lt~g--~~~t~PsWspDG~~lw~v~dg~~~~~  422 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGG-----VAVQVLEG--HSLTRPSWSLDADAVWVVVDGNTVVR  422 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCC-----cceeeecC--CCCCCceECCCCCceEEEecCcceEE
Confidence            3567889999999887764      233  455555433     22222232  23778899999888777653312 22


Q ss_pred             EEe---------eeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeec-CCCceEE---EeeecCCC
Q psy11529         81 VWT---------QNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFES-ENDWWVA---KHIKKPIK  147 (244)
Q Consensus        81 iwd---------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~-~~~~~~~---~~~~~~~~  147 (244)
                      +.+         +.+..+....     .....|..+.|+|||..++... ++.|.+--+.. .......   ........
T Consensus       423 v~~~~~~gql~~~~vd~ge~~~-----~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~  496 (591)
T PRK13616        423 VIRDPATGQLARTPVDASAVAS-----RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLG  496 (591)
T ss_pred             EeccCCCceEEEEeccCchhhh-----ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccC
Confidence            222         0022222111     2345799999999999988866 46666633222 1111111   11122223


Q ss_pred             CceeEEEecCCCCEEEEeeCCCeEEEEEe
Q psy11529        148 STITCLDWHPNNHLLGCGSTDFKVRVFSA  176 (244)
Q Consensus       148 ~~v~~~~~~p~~~~l~~~~~dg~i~i~d~  176 (244)
                      ..+.++.|.+++.++ ++..++.-.+|.+
T Consensus       497 ~~~~~l~W~~~~~L~-V~~~~~~~~v~~v  524 (591)
T PRK13616        497 DTAVSLDWRTGDSLV-VGRSDPEHPVWYV  524 (591)
T ss_pred             CccccceEecCCEEE-EEecCCCCceEEE
Confidence            346889999999855 5555555556665

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.31  E-value=0.00041  Score=50.06  Aligned_cols=177  Identities=10%  Similarity=0.025  Sum_probs=93.4

Q ss_pred             eeccCCCceEEEEeCCCCCeE-EEEeCCccEEEEeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEE
Q psy11529         50 VLDGHDLKVTGIDWAPNTNRI-VTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVC  128 (244)
Q Consensus        50 ~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~  128 (244)
                      .+.+-...+.+++|+|+...| ++....+.|..++  . +++....+.+. ..+..-.|++..++.++++.-.++.+.++
T Consensus        16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els--~-~G~vlr~i~l~-g~~D~EgI~y~g~~~~vl~~Er~~~L~~~   91 (248)
T PF06977_consen   16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELS--L-DGKVLRRIPLD-GFGDYEGITYLGNGRYVLSEERDQRLYIF   91 (248)
T ss_dssp             E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEE--T-T--EEEEEE-S-S-SSEEEEEE-STTEEEEEETTTTEEEEE
T ss_pred             ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEc--C-CCCEEEEEeCC-CCCCceeEEEECCCEEEEEEcCCCcEEEE
Confidence            455556679999999976654 5555567776666  4 46655555443 35678899998888777777679999999


Q ss_pred             EeecCCCceEE---Eeee----cCCCCceeEEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeE
Q psy11529        129 YFESENDWWVA---KHIK----KPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLV  201 (244)
Q Consensus       129 d~~~~~~~~~~---~~~~----~~~~~~v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (244)
                      ++.........   ....    ...+..+-.++|+|.++.|+.+-+..-..+|.++.....    .....   .......
T Consensus        92 ~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~----~~~~~---~~~~~~~  164 (248)
T PF06977_consen   92 TIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGG----FDLFV---SDDQDLD  164 (248)
T ss_dssp             EE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-S----S--EE---EE-HHHH
T ss_pred             EEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCc----cceee---ccccccc
Confidence            98554321111   1111    123456899999998877777777766778877421100    00000   0000000


Q ss_pred             EecCCCCCCCCeEEEEEecC-CCEEEEeeCCCcEEEEeCC
Q psy11529        202 ELNNSSSGGGWIHSVAFSKD-GNKLCWTSHDGSINVRMSQ  240 (244)
Q Consensus       202 ~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~vwd~~  240 (244)
                      .....   ...+++++++|. +++++.+..+..|..+|.+
T Consensus       165 ~~~~~---~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~  201 (248)
T PF06977_consen  165 DDKLF---VRDLSGLSYDPRTGHLLILSDESRLLLELDRQ  201 (248)
T ss_dssp             -HT-----SS---EEEEETTTTEEEEEETTTTEEEEE-TT
T ss_pred             cccce---eccccceEEcCCCCeEEEEECCCCeEEEECCC
Confidence            01111   445788999994 5566666667777777643

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=98.26  E-value=0.00023  Score=43.86  Aligned_cols=100  Identities=12%  Similarity=0.135  Sum_probs=66.2

Q ss_pred             eEEEEEcC---CC-CeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCC
Q psy11529         12 VTTHAWNN---TR-QQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNND   87 (244)
Q Consensus        12 v~~~~~~~---~~-~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~   87 (244)
                      |+++++..   || +.|++|+.|..|++|+-+.      .+..+. -.+.|.++.-... .+|+.+..+|+|-+|+  -.
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e------~~~Ei~-e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~--~~   71 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE------IVAEIT-ETDKVTSLCSLGG-GRFAYALANGTVGVYD--RS   71 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc------EEEEEe-cccceEEEEEcCC-CEEEEEecCCEEEEEe--Cc
Confidence            56676655   33 4799999999999998754      455555 3566777776654 6788899999999999  33


Q ss_pred             CCCceeeEEEeccCcceEEEEECC---CC-CeEEEeeCCCeEE
Q psy11529         88 DKKWKPTLVLLRINRAATCVKWSP---LE-NKFAAGSGARLIS  126 (244)
Q Consensus        88 ~~~~~~~~~~~~~~~~v~~~~~~~---~~-~~l~~~~~d~~i~  126 (244)
                      ...    ...+ .+..+.++++..   +| ..|++|-.+|.|-
T Consensus        72 ~Rl----WRiK-SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   72 QRL----WRIK-SKNQVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             cee----eeec-cCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            222    2222 234455555533   22 3588888888764

>KOG4640|consensus

Probab=98.25  E-value=1.1e-05  Score=63.53  Aligned_cols=95  Identities=15%  Similarity=0.222  Sum_probs=72.1

Q ss_pred             CCceEEEEeCCCCCeEEEEeCCccEEEEeeeCCCCCceeeEEEeccCcceE-EEEECCCCCeEEEeeCCCeEEEEEeecC
Q psy11529         55 DLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAAT-CVKWSPLENKFAAGSGARLISVCYFESE  133 (244)
Q Consensus        55 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~d~~i~i~d~~~~  133 (244)
                      ...+.-+.|+|.-..+|.+..+|.+.+..  +.-.   ....++-+...++ +++|.|||+.||+|-.||+|++.|.+++
T Consensus        20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R--~n~q---Rlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~   94 (665)
T KOG4640|consen   20 PINIKRIEWNPKMDLIATRTEKGELLIHR--LNWQ---RLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKG   94 (665)
T ss_pred             ccceEEEEEcCccchhheeccCCcEEEEE--eccc---eeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCC
Confidence            45677899999999999999999999999  4422   2444443445555 9999999999999999999999999998


Q ss_pred             CCceEEEeeecCCCCceeEEEecC
Q psy11529        134 NDWWVAKHIKKPIKSTITCLDWHP  157 (244)
Q Consensus       134 ~~~~~~~~~~~~~~~~v~~~~~~p  157 (244)
                      ..   ...........|.++-|.|
T Consensus        95 ~~---l~~~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   95 GR---LVSFLFSVETDISKGIWDR  115 (665)
T ss_pred             Cc---eeccccccccchheeeccc
Confidence            76   2222233346777888864

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=98.25  E-value=9.8e-05  Score=61.37  Aligned_cols=139  Identities=11%  Similarity=0.059  Sum_probs=88.0

Q ss_pred             CCccEEEEeeeCCCCCceeeEEEeccCcceEEEEECC-----CCCeEEEeeCCCeEEEEEeecCCCceEE-EeeecCCCC
Q psy11529         75 ADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSP-----LENKFAAGSGARLISVCYFESENDWWVA-KHIKKPIKS  148 (244)
Q Consensus        75 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~d~~i~i~d~~~~~~~~~~-~~~~~~~~~  148 (244)
                      ....++-.|  ++.|+.+...... ...+|..++-..     +....+.|-.++.+..||.+.....-.. .........
T Consensus       502 ~~~~ly~mD--Le~GKVV~eW~~~-~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~  578 (794)
T PF08553_consen  502 NPNKLYKMD--LERGKVVEEWKVH-DDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKN  578 (794)
T ss_pred             CCCceEEEe--cCCCcEEEEeecC-CCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCC
Confidence            346666667  8888866555432 222344443321     1334567777888999999876421110 011112335


Q ss_pred             ceeEEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEe
Q psy11529        149 TITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWT  228 (244)
Q Consensus       149 ~v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~  228 (244)
                      ..+|++-+.+| +||+|+.+|.||+||-                  ...+....+++-   +.+|..+..+.||++|++.
T Consensus       579 ~Fs~~aTt~~G-~iavgs~~G~IRLyd~------------------~g~~AKT~lp~l---G~pI~~iDvt~DGkwilaT  636 (794)
T PF08553_consen  579 NFSCFATTEDG-YIAVGSNKGDIRLYDR------------------LGKRAKTALPGL---GDPIIGIDVTADGKWILAT  636 (794)
T ss_pred             CceEEEecCCc-eEEEEeCCCcEEeecc------------------cchhhhhcCCCC---CCCeeEEEecCCCcEEEEe
Confidence            67777777676 8999999999999994                  111222334444   8899999999999998766


Q ss_pred             eCCCcEEEEeC
Q psy11529        229 SHDGSINVRMS  239 (244)
Q Consensus       229 ~~dg~i~vwd~  239 (244)
                      + +..|.+++.
T Consensus       637 c-~tyLlLi~t  646 (794)
T PF08553_consen  637 C-KTYLLLIDT  646 (794)
T ss_pred             e-cceEEEEEE
Confidence            5 557777765

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>smart00320 WD40 WD40 repeats

Probab=98.20  E-value=7e-06  Score=40.28  Aligned_cols=38  Identities=39%  Similarity=0.489  Sum_probs=32.8

Q ss_pred             ceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEe
Q psy11529        198 NCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRM  238 (244)
Q Consensus       198 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd  238 (244)
                      ++...+..|   ...+.++.|++++.++++++.|+.+++|+
T Consensus         3 ~~~~~~~~~---~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        3 ELLKTLKGH---TGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEEec---CCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            445566666   78999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=98.20  E-value=0.00033  Score=43.22  Aligned_cols=100  Identities=18%  Similarity=0.161  Sum_probs=64.7

Q ss_pred             eEEEEeCC---CC-CeEEEEeCCccEEEEeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecC
Q psy11529         58 VTGIDWAP---NT-NRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESE  133 (244)
Q Consensus        58 v~~~~~~~---~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~  133 (244)
                      |+++++..   +| +.|+.|+.|..|++|+  -  .+....+   .....+.++.-... ..++.+..+|+|-+|+-...
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~--~--~e~~~Ei---~e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~R   73 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFK--G--DEIVAEI---TETDKVTSLCSLGG-GRFAYALANGTVGVYDRSQR   73 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEe--C--CcEEEEE---ecccceEEEEEcCC-CEEEEEecCCEEEEEeCcce
Confidence            55666544   33 5799999999999999  2  2322222   23566777777665 67999999999999865322


Q ss_pred             CCceEEEeeecCCCCceeEEEecC---CC-CEEEEeeCCCeEE
Q psy11529        134 NDWWVAKHIKKPIKSTITCLDWHP---NN-HLLGCGSTDFKVR  172 (244)
Q Consensus       134 ~~~~~~~~~~~~~~~~v~~~~~~p---~~-~~l~~~~~dg~i~  172 (244)
                        .|..+     .+..+.++++..   || ..|++|-.+|.|-
T Consensus        74 --lWRiK-----SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   74 --LWRIK-----SKNQVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             --eeeec-----cCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence              12221     223456665554   33 3788998899864

>smart00320 WD40 WD40 repeats

Probab=98.19  E-value=7.9e-06  Score=40.08  Aligned_cols=38  Identities=26%  Similarity=0.534  Sum_probs=33.9

Q ss_pred             eeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEe
Q psy11529         46 SQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWT   83 (244)
Q Consensus        46 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd   83 (244)
                      .....+..|...|.++.|++++..+++++.|+.+++|+
T Consensus         3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            45667778899999999999989999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.18  E-value=0.00051  Score=53.75  Aligned_cols=146  Identities=9%  Similarity=-0.025  Sum_probs=80.3

Q ss_pred             CCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEE-EEeCCCCCeEEEEeCCccEEEEeeeCCCCCceeeEEEec
Q psy11529         21 RQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTG-IDWAPNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLR   99 (244)
Q Consensus        21 ~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~   99 (244)
                      +..++.++.++.+.-+|.++  +  +.+...... ..+.+ ...  .+..++.++.++.+..+|  .++++.........
T Consensus       120 ~~~v~v~~~~g~l~ald~~t--G--~~~W~~~~~-~~~~ssP~v--~~~~v~v~~~~g~l~ald--~~tG~~~W~~~~~~  190 (394)
T PRK11138        120 GGKVYIGSEKGQVYALNAED--G--EVAWQTKVA-GEALSRPVV--SDGLVLVHTSNGMLQALN--ESDGAVKWTVNLDV  190 (394)
T ss_pred             CCEEEEEcCCCEEEEEECCC--C--CCcccccCC-CceecCCEE--ECCEEEEECCCCEEEEEE--ccCCCEeeeecCCC
Confidence            44566777789999999876  4  444433322 22211 111  244566677789999999  88888554443211


Q ss_pred             cCcceEEEEECC--CCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCC---ceeEEEecC--CCCEEEEeeCCCeEE
Q psy11529        100 INRAATCVKWSP--LENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKS---TITCLDWHP--NNHLLGCGSTDFKVR  172 (244)
Q Consensus       100 ~~~~v~~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~---~v~~~~~~p--~~~~l~~~~~dg~i~  172 (244)
                      ...... ..-+|  .+..++.++.++.+..+|..+++..|...........   ....+.-+|  .+..++.++.+|.+.
T Consensus       191 ~~~~~~-~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~  269 (394)
T PRK11138        191 PSLTLR-GESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLV  269 (394)
T ss_pred             Cccccc-CCCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEE
Confidence            000000 00112  1345777788899999998888765543221110000   111122233  245666777889999


Q ss_pred             EEEe
Q psy11529        173 VFSA  176 (244)
Q Consensus       173 i~d~  176 (244)
                      .+|.
T Consensus       270 ald~  273 (394)
T PRK11138        270 ALDL  273 (394)
T ss_pred             EEEC
Confidence            9998

>KOG2444|consensus

Probab=98.17  E-value=3.5e-06  Score=58.20  Aligned_cols=107  Identities=13%  Similarity=0.095  Sum_probs=72.3

Q ss_pred             CCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCc
Q psy11529        113 ENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGS  192 (244)
Q Consensus       113 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  192 (244)
                      +..+++|+.+|.|.+|.++.....  ..............+.--.++.+..++..+|.|+.|++                
T Consensus        70 ~~~~~vG~~dg~v~~~n~n~~g~~--~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~----------------  131 (238)
T KOG2444|consen   70 SAKLMVGTSDGAVYVFNWNLEGAH--SDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNI----------------  131 (238)
T ss_pred             CceEEeecccceEEEecCCccchH--HHhhhcccccceeccccccccceeEEeccCCceeeecc----------------
Confidence            467999999999999998844320  11111111122222333335568889999999999998                


Q ss_pred             cccccceeEEecCCCCCC-CCeEEEEEecCCCEEEEe--eCCCcEEEEeCCCC
Q psy11529        193 KSTLGNCLVELNNSSSGG-GWIHSVAFSKDGNKLCWT--SHDGSINVRMSQQV  242 (244)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~--~~dg~i~vwd~~~~  242 (244)
                        ...+.+.....|   . .+...+..+..+++|+.+  |.|..++.|++...
T Consensus       132 --~p~k~~g~~g~h---~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~  179 (238)
T KOG2444|consen  132 --KPNKVLGYVGQH---NFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEKI  179 (238)
T ss_pred             --ccCceeeeeccc---cCCCcceeEEecCCceEEeeccccchhhhhcchhhh
Confidence              555655555555   4 667777777778888888  88889999998764

>KOG1645|consensus

Probab=98.16  E-value=4.5e-05  Score=57.05  Aligned_cols=85  Identities=11%  Similarity=0.125  Sum_probs=66.4

Q ss_pred             eeeeeeccCCCceEEEEeCCCCC-eEEEEeCCccEEEEeeeCCCCCceeeEEEeccCcceEEEEECCCC-CeEEEeeCCC
Q psy11529         46 SQLDVLDGHDLKVTGIDWAPNTN-RIVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLE-NKFAAGSGAR  123 (244)
Q Consensus        46 ~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~  123 (244)
                      +....+..+...|..++|+|..+ ++..++.+.+|+|.|  +++........   ....+++++|.-+. ++++.|...|
T Consensus       184 kssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~d--let~~~vssy~---a~~~~wSC~wDlde~h~IYaGl~nG  258 (463)
T KOG1645|consen  184 KSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMD--LETSCVVSSYI---AYNQIWSCCWDLDERHVIYAGLQNG  258 (463)
T ss_pred             chhhcccccchhhhhhccCccccceeeeeccCceEEEEe--cccceeeehee---ccCCceeeeeccCCcceeEEeccCc
Confidence            44556677888999999999665 778889999999999  67765433332   34889999998874 5577777899


Q ss_pred             eEEEEEeecCCC
Q psy11529        124 LISVCYFESEND  135 (244)
Q Consensus       124 ~i~i~d~~~~~~  135 (244)
                      .|.|||++..+.
T Consensus       259 ~VlvyD~R~~~~  270 (463)
T KOG1645|consen  259 MVLVYDMRQPEG  270 (463)
T ss_pred             eEEEEEccCCCc
Confidence            999999998765

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.13  E-value=0.00028  Score=50.85  Aligned_cols=153  Identities=8%  Similarity=0.082  Sum_probs=91.4

Q ss_pred             EEcCCCCeEEEecC-----CCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeC---------------
Q psy11529         16 AWNNTRQQLAFTPN-----NQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSA---------------   75 (244)
Q Consensus        16 ~~~~~~~~l~~~~~-----d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---------------   75 (244)
                      .|||||++|...-+     .|.|-|||...   .++.+.++..|.-.-..+.|.+||+.++.+..               
T Consensus       120 vfs~dG~~LYATEndfd~~rGViGvYd~r~---~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNl  196 (366)
T COG3490         120 VFSPDGRLLYATENDFDPNRGVIGVYDARE---GFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNL  196 (366)
T ss_pred             ccCCCCcEEEeecCCCCCCCceEEEEeccc---ccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccch
Confidence            48999998876533     47899999875   35778888888878889999999999887642               


Q ss_pred             ---CccEEEEeeeCCCCCceeeEEEe--ccCcceEEEEECCCCCeEEEeeCCCe-----EEEEEeecCCCceEEEeee--
Q psy11529         76 ---DRNAYVWTQNNDDKKWKPTLVLL--RINRAATCVKWSPLENKFAAGSGARL-----ISVCYFESENDWWVAKHIK--  143 (244)
Q Consensus        76 ---d~~i~iwd~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~-----i~i~d~~~~~~~~~~~~~~--  143 (244)
                         ..++.+.|  ..+++.+....+.  .+.-.++.++..+||...+-+-..|.     -.+=-...++.   .....  
T Consensus       197 dsMePSlvlld--~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~---l~~~~~p  271 (366)
T COG3490         197 DSMEPSLVLLD--AATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEP---LEFLDLP  271 (366)
T ss_pred             hhcCccEEEEe--ccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCc---CcccCCC
Confidence               12233344  3455544444443  34456778888888776555432221     00100111111   00100  


Q ss_pred             ----cCCCCceeEEEecCCCCEEEEee-CCCeEEEEEe
Q psy11529        144 ----KPIKSTITCLDWHPNNHLLGCGS-TDFKVRVFSA  176 (244)
Q Consensus       144 ----~~~~~~v~~~~~~p~~~~l~~~~-~dg~i~i~d~  176 (244)
                          ......+-+++.+.+..+++..+ ..+...+||.
T Consensus       272 ee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da  309 (366)
T COG3490         272 EEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDA  309 (366)
T ss_pred             HHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEc
Confidence                01134577788887555555544 4457889998

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=98.11  E-value=0.0026  Score=49.94  Aligned_cols=153  Identities=12%  Similarity=0.082  Sum_probs=75.4

Q ss_pred             CCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCc-c---eeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEee
Q psy11529          9 INPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAAND-W---SQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQ   84 (244)
Q Consensus         9 ~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~-~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~   84 (244)
                      .+.|-++.|+.+.++++ -..||.+++||+.+  .. +   .......-.+..+....+..+|-.++  ..++.+.+.. 
T Consensus        80 ~~~iv~~~wt~~e~Lvv-V~~dG~v~vy~~~G--~~~fsl~~~i~~~~v~e~~i~~~~~~~~GivvL--t~~~~~~~v~-  153 (410)
T PF04841_consen   80 SGRIVGMGWTDDEELVV-VQSDGTVRVYDLFG--EFQFSLGEEIEEEKVLECRIFAIWFYKNGIVVL--TGNNRFYVVN-  153 (410)
T ss_pred             CCCEEEEEECCCCeEEE-EEcCCEEEEEeCCC--ceeechhhhccccCcccccccccccCCCCEEEE--CCCCeEEEEe-
Confidence            47788888887655554 45799999999976  21 0   00111111122233333444553333  3445555443 


Q ss_pred             eCCCCCceee--EEEeccCc------ceEE-EEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEe
Q psy11529         85 NNDDKKWKPT--LVLLRINR------AATC-VKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDW  155 (244)
Q Consensus        85 ~~~~~~~~~~--~~~~~~~~------~v~~-~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~  155 (244)
                       .........  ...+....      .... ..++.+....+....++.+.+.+-...+      .  ....+++..++.
T Consensus       154 -n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~------~--i~~~~~i~~iav  224 (410)
T PF04841_consen  154 -NIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFK------Q--IDSDGPIIKIAV  224 (410)
T ss_pred             -CccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEccccc------c--ccCCCCeEEEEE
Confidence             222111100  01011000      0000 2233333333333344444432211110      0  112368999999


Q ss_pred             cCCCCEEEEeeCCCeEEEEEe
Q psy11529        156 HPNNHLLGCGSTDFKVRVFSA  176 (244)
Q Consensus       156 ~p~~~~l~~~~~dg~i~i~d~  176 (244)
                      ||+|+++|.-..+|.+.+.+.
T Consensus       225 Spng~~iAl~t~~g~l~v~ss  245 (410)
T PF04841_consen  225 SPNGKFIALFTDSGNLWVVSS  245 (410)
T ss_pred             CCCCCEEEEEECCCCEEEEEC
Confidence            999999999999999988875

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PHA02713 hypothetical protein; Provisional

Probab=98.09  E-value=0.00036  Score=56.91  Aligned_cols=190  Identities=7%  Similarity=-0.052  Sum_probs=94.9

Q ss_pred             CCCeEEEecCC------CeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCc-----cEEEEeeeCCC
Q psy11529         20 TRQQLAFTPNN------QEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADR-----NAYVWTQNNDD   88 (244)
Q Consensus        20 ~~~~l~~~~~d------~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-----~i~iwd~~~~~   88 (244)
                      ++..++.|+.+      ..+..||...  +.|.....+.........+..  +++..+.|+.++     .+..||  ..+
T Consensus       303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~--n~W~~~~~m~~~R~~~~~~~~--~g~IYviGG~~~~~~~~sve~Yd--p~~  376 (557)
T PHA02713        303 DNEIIIAGGYNFNNPSLNKVYKINIEN--KIHVELPPMIKNRCRFSLAVI--DDTIYAIGGQNGTNVERTIECYT--MGD  376 (557)
T ss_pred             CCEEEEEcCCCCCCCccceEEEEECCC--CeEeeCCCCcchhhceeEEEE--CCEEEEECCcCCCCCCceEEEEE--CCC
Confidence            55667777643      3467778766  545444433321112222222  467777777653     478899  777


Q ss_pred             CCceeeEEEeccCcceEEEEECCCCCeEEEeeCCC-----------------------eEEEEEeecCCCceEEEeeecC
Q psy11529         89 KKWKPTLVLLRINRAATCVKWSPLENKFAAGSGAR-----------------------LISVCYFESENDWWVAKHIKKP  145 (244)
Q Consensus        89 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-----------------------~i~i~d~~~~~~~~~~~~~~~~  145 (244)
                      .++.....+.........+..  +++..+.|+.++                       .+..||.++.+  |........
T Consensus       377 ~~W~~~~~mp~~r~~~~~~~~--~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~--W~~v~~m~~  452 (557)
T PHA02713        377 DKWKMLPDMPIALSSYGMCVL--DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNI--WETLPNFWT  452 (557)
T ss_pred             CeEEECCCCCcccccccEEEE--CCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCe--EeecCCCCc
Confidence            765543322222222222333  566777776542                       35556655542  332222111


Q ss_pred             CCCceeEEEecCCCCEEEEeeCCC------eEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEe
Q psy11529        146 IKSTITCLDWHPNNHLLGCGSTDF------KVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFS  219 (244)
Q Consensus       146 ~~~~v~~~~~~p~~~~l~~~~~dg------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  219 (244)
                      ..... +++ .-++++.+.|+.++      .+..||..+.               .....+..+...   ......+++ 
T Consensus       453 ~r~~~-~~~-~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~---------------~~W~~~~~m~~~---r~~~~~~~~-  511 (557)
T PHA02713        453 GTIRP-GVV-SHKDDIYVVCDIKDEKNVKTCIFRYNTNTY---------------NGWELITTTESR---LSALHTILH-  511 (557)
T ss_pred             ccccC-cEE-EECCEEEEEeCCCCCCccceeEEEecCCCC---------------CCeeEccccCcc---cccceeEEE-
Confidence            11111 122 22466666666432      3566776320               013334444332   222333333 


Q ss_pred             cCCCEEEEeeCCC--cEEEEeCCC
Q psy11529        220 KDGNKLCWTSHDG--SINVRMSQQ  241 (244)
Q Consensus       220 ~~~~~l~~~~~dg--~i~vwd~~~  241 (244)
                       +|++.++|+.||  .+..||+.+
T Consensus       512 -~~~iyv~Gg~~~~~~~e~yd~~~  534 (557)
T PHA02713        512 -DNTIMMLHCYESYMLQDTFNVYT  534 (557)
T ss_pred             -CCEEEEEeeecceeehhhcCccc
Confidence             788889999888  677777765

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=98.07  E-value=0.0024  Score=48.50  Aligned_cols=179  Identities=15%  Similarity=0.121  Sum_probs=102.0

Q ss_pred             eEEEeeeccCCCcceeeeeeccCCCceEEEE---eCCC----CCeEEEEeC----------CccEEEEeeeCCCC-----
Q psy11529         32 EVHLYQYEKAANDWSQLDVLDGHDLKVTGID---WAPN----TNRIVTCSA----------DRNAYVWTQNNDDK-----   89 (244)
Q Consensus        32 ~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~---~~~~----~~~l~~~~~----------d~~i~iwd~~~~~~-----   89 (244)
                      .|++.|..+  ........+.. .+.+.+++   +..+    ..+++.|+.          .|+|.++++  ...     
T Consensus         3 ~i~l~d~~~--~~~~~~~~l~~-~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i--~~~~~~~~   77 (321)
T PF03178_consen    3 SIRLVDPTT--FEVLDSFELEP-NEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEI--SESPENNF   77 (321)
T ss_dssp             EEEEEETTT--SSEEEEEEEET-TEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEE--CSS-----
T ss_pred             EEEEEeCCC--CeEEEEEECCC-CceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEE--Ecccccce
Confidence            567777654  21122223332 33444443   4332    456776643          289999994  442     


Q ss_pred             CceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEeeCCC
Q psy11529         90 KWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDF  169 (244)
Q Consensus        90 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg  169 (244)
                      +.. .......++.|++++-- ++ +|+++. .+.+.+|++...+.  ............+.++...  ++++++|....
T Consensus        78 ~l~-~i~~~~~~g~V~ai~~~-~~-~lv~~~-g~~l~v~~l~~~~~--l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~  149 (321)
T PF03178_consen   78 KLK-LIHSTEVKGPVTAICSF-NG-RLVVAV-GNKLYVYDLDNSKT--LLKKAFYDSPFYITSLSVF--KNYILVGDAMK  149 (321)
T ss_dssp             EEE-EEEEEEESS-EEEEEEE-TT-EEEEEE-TTEEEEEEEETTSS--EEEEEEE-BSSSEEEEEEE--TTEEEEEESSS
T ss_pred             EEE-EEEEEeecCcceEhhhh-CC-EEEEee-cCEEEEEEccCccc--chhhheecceEEEEEEecc--ccEEEEEEccc
Confidence            222 22223457888888766 33 444444 48899999999872  1222222222356666555  56999999888


Q ss_pred             eEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCC
Q psy11529        170 KVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQ  241 (244)
Q Consensus       170 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~  241 (244)
                      .+.++....                 ....+..+.... ....++++.|-++++.++.+..+|.+.++....
T Consensus       150 sv~~~~~~~-----------------~~~~l~~va~d~-~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~  203 (321)
T PF03178_consen  150 SVSLLRYDE-----------------ENNKLILVARDY-QPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNP  203 (321)
T ss_dssp             SEEEEEEET-----------------TTE-EEEEEEES-S-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-S
T ss_pred             CEEEEEEEc-----------------cCCEEEEEEecC-CCccEEEEEEecCCcEEEEEcCCCeEEEEEECC
Confidence            888886531                 122222222110 055688999987778899999999999988763

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>KOG2395|consensus

Probab=98.07  E-value=0.00074  Score=52.81  Aligned_cols=141  Identities=11%  Similarity=0.076  Sum_probs=91.1

Q ss_pred             ecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCC--e-----EEEEeCCccEEEEeeeCCCCCceeeEEEe-
Q psy11529         27 TPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTN--R-----IVTCSADRNAYVWTQNNDDKKWKPTLVLL-   98 (244)
Q Consensus        27 ~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~-----l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-   98 (244)
                      +.....++=.|++.  +  +.+..++-+.. |+-+.+.|+.+  .     -+.|-.+..|.-||.+++....+...... 
T Consensus       352 ~~~~~~l~klDIE~--G--KIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kq  426 (644)
T KOG2395|consen  352 GGEQDKLYKLDIER--G--KIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQ  426 (644)
T ss_pred             CCCcCcceeeeccc--c--eeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccc
Confidence            33445566667766  5  66667765554 77777877543  2     23466688999999654443211111111 


Q ss_pred             -ccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEeeCCCeEEEEEee
Q psy11529         99 -RINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAY  177 (244)
Q Consensus        99 -~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~i~i~d~~  177 (244)
                       .......|.+-..+| ++++|+.+|.|++||- .+..   .+..+.+...+|..+..+.+|++|+..+ +..+.+.++.
T Consensus       427 y~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~---AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t~  500 (644)
T KOG2395|consen  427 YSTKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGRR---AKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDTL  500 (644)
T ss_pred             cccccccceeeecCCc-eEEEeecCCcEEeehh-hhhh---hhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEEEe
Confidence             122345565555554 7999999999999996 4433   3555666778999999999999887655 5567777775


Q ss_pred             e
Q psy11529        178 I  178 (244)
Q Consensus       178 ~  178 (244)
                      -
T Consensus       501 ~  501 (644)
T KOG2395|consen  501 I  501 (644)
T ss_pred             c
Confidence            4

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=98.07  E-value=0.0022  Score=47.78  Aligned_cols=175  Identities=14%  Similarity=0.206  Sum_probs=84.4

Q ss_pred             EeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCCCCCceeeEEEeccCcceEEEEECCCCC
Q psy11529         35 LYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLEN  114 (244)
Q Consensus        35 v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  114 (244)
                      ||...+.+..++.+.  ..-.+.+..+.-+++|++++++..-....-||  .....+.+..  ......+..+.|.|++.
T Consensus       126 iy~T~DgG~tW~~~~--~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~--~G~~~w~~~~--r~~~~riq~~gf~~~~~  199 (302)
T PF14870_consen  126 IYRTTDGGKTWQAVV--SETSGSINDITRSSDGRYVAVSSRGNFYSSWD--PGQTTWQPHN--RNSSRRIQSMGFSPDGN  199 (302)
T ss_dssp             EEEESSTTSSEEEEE---S----EEEEEE-TTS-EEEEETTSSEEEEE---TT-SS-EEEE----SSS-EEEEEE-TTS-
T ss_pred             EEEeCCCCCCeeEcc--cCCcceeEeEEECCCCcEEEEECcccEEEEec--CCCccceEEc--cCccceehhceecCCCC
Confidence            444444334454432  33457788899999999998887666666788  3332333222  33568899999999987


Q ss_pred             eEEEeeCCCeEEEEEeecCCCceEEEeeec-CCCCceeEEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCcc
Q psy11529        115 KFAAGSGARLISVCYFESENDWWVAKHIKK-PIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSK  193 (244)
Q Consensus       115 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~-~~~~~v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  193 (244)
                      ..+.+ ..+.++.=+.......+....... ...-.+..++|.+++...++|+ .|.+. ...                 
T Consensus       200 lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l~-~S~-----------------  259 (302)
T PF14870_consen  200 LWMLA-RGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGTLL-VST-----------------  259 (302)
T ss_dssp             EEEEE-TTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEES-TT-EE-EES-----------------
T ss_pred             EEEEe-CCcEEEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeC-CccEE-EeC-----------------
Confidence            76654 788887754111111111111111 1223589999999987777665 44433 222                 


Q ss_pred             ccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEE
Q psy11529        194 STLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVR  237 (244)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw  237 (244)
                       ..++.-...+.-......++.+.|.++.+-++.| .+|.|.-|
T Consensus       260 -DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG-~~G~ll~~  301 (302)
T PF14870_consen  260 -DGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLG-QDGVLLRY  301 (302)
T ss_dssp             -STTSS-EE-GGGTTSSS---EEEEEETTEEEEE--STTEEEEE
T ss_pred             -CCCccceECccccCCCCceEEEEEcCCCceEEEC-CCcEEEEe
Confidence             1222222221100004568889998766655544 78877655

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.06  E-value=0.0033  Score=49.63  Aligned_cols=139  Identities=14%  Similarity=0.079  Sum_probs=71.9

Q ss_pred             CCeEEEEeCCccEEEEeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecC-------CCceEE
Q psy11529         67 TNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESE-------NDWWVA  139 (244)
Q Consensus        67 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-------~~~~~~  139 (244)
                      |..|+..+ ++.|.+||  .++++......    -..|..+.|++++++++..+.+ .+.|++.+..       ......
T Consensus       117 G~LL~~~~-~~~i~~yD--w~~~~~i~~i~----v~~vk~V~Ws~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~  188 (443)
T PF04053_consen  117 GNLLGVKS-SDFICFYD--WETGKLIRRID----VSAVKYVIWSDDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDA  188 (443)
T ss_dssp             SSSEEEEE-TTEEEEE---TTT--EEEEES----S-E-EEEEE-TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGG
T ss_pred             CcEEEEEC-CCCEEEEE--hhHcceeeEEe----cCCCcEEEEECCCCEEEEEeCC-eEEEEEecchhcccccccCchhc
Confidence            66666655 44799999  78877444332    2248999999999999998866 4777776554       000000


Q ss_pred             EeeecCCCCceeEEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEe
Q psy11529        140 KHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFS  219 (244)
Q Consensus       140 ~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  219 (244)
                      ..........|.+.+|..+  .++..+.. +|+.  +..                -....+..+      ..++.=+.+.
T Consensus       189 f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~lkY--l~~----------------Ge~~~i~~l------d~~~yllgy~  241 (443)
T PF04053_consen  189 FELIHEISERIKSGCWVED--CFIYTTSN-HLKY--LVN----------------GETGIIAHL------DKPLYLLGYL  241 (443)
T ss_dssp             EEEEEEE-S--SEEEEETT--EEEEE-TT-EEEE--EET----------------TEEEEEEE-------SS--EEEEEE
T ss_pred             eEEEEEecceeEEEEEEcC--EEEEEcCC-eEEE--EEc----------------CCcceEEEc------CCceEEEEEE
Confidence            1111222468889999876  44444444 6665  311                011223333      5567778888


Q ss_pred             cCCCEEEEeeCCCcEEEEeCC
Q psy11529        220 KDGNKLCWTSHDGSINVRMSQ  240 (244)
Q Consensus       220 ~~~~~l~~~~~dg~i~vwd~~  240 (244)
                      |....++....|+.|..+.+.
T Consensus       242 ~~~~~ly~~Dr~~~v~~~~ld  262 (443)
T PF04053_consen  242 PKENRLYLIDRDGNVISYELD  262 (443)
T ss_dssp             TTTTEEEEE-TT--EEEEE--
T ss_pred             ccCCEEEEEECCCCEEEEEEC
Confidence            877788888888888887664

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=98.05  E-value=0.0033  Score=48.96  Aligned_cols=156  Identities=11%  Similarity=0.062  Sum_probs=102.7

Q ss_pred             ceEEEEEcCCCCeEEEecC---CCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEe-CCccEEEEeeeC
Q psy11529         11 PVTTHAWNNTRQQLAFTPN---NQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCS-ADRNAYVWTQNN   86 (244)
Q Consensus        11 ~v~~~~~~~~~~~l~~~~~---d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~   86 (244)
                      .-..++++|+++.+.++..   ++.+.+.|..+  .  ........-..+ ..++++|+|+.++.+. .++.+.+.|  .
T Consensus       117 ~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t--~--~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~--~  189 (381)
T COG3391         117 GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAAT--N--KVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVID--T  189 (381)
T ss_pred             CCceEEECCCCCEEEEEecccCCceEEEEeCCC--C--eEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEe--C
Confidence            4457899999987776654   57788888766  3  444444333334 8899999999766654 688999999  5


Q ss_pred             CCCCceeeEE---EeccCcceEEEEECCCCCeEEEeeCC---CeEEEEEeecCCCceEEEe-eecCCCCceeEEEecCCC
Q psy11529         87 DDKKWKPTLV---LLRINRAATCVKWSPLENKFAAGSGA---RLISVCYFESENDWWVAKH-IKKPIKSTITCLDWHPNN  159 (244)
Q Consensus        87 ~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~l~~~~~d---~~i~i~d~~~~~~~~~~~~-~~~~~~~~v~~~~~~p~~  159 (244)
                      ....... -.   ..........+.++|+++++.+....   +.+...|..+...   ... ...... ....+..+|+|
T Consensus       190 ~~~~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v---~~~~~~~~~~-~~~~v~~~p~g  264 (381)
T COG3391         190 SGNSVVR-GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNV---TATDLPVGSG-APRGVAVDPAG  264 (381)
T ss_pred             CCcceec-cccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceE---EEeccccccC-CCCceeECCCC
Confidence            5544221 10   11223445678999999977665554   4777777776643   111 112222 56778999999


Q ss_pred             CEEEEeeC-CCeEEEEEeee
Q psy11529        160 HLLGCGST-DFKVRVFSAYI  178 (244)
Q Consensus       160 ~~l~~~~~-dg~i~i~d~~~  178 (244)
                      +.+.+... .+.+.+.|...
T Consensus       265 ~~~yv~~~~~~~V~vid~~~  284 (381)
T COG3391         265 KAAYVANSQGGTVSVIDGAT  284 (381)
T ss_pred             CEEEEEecCCCeEEEEeCCC
Confidence            98888754 47899998743

>PRK13616 lipoprotein LpqB; Provisional

Probab=98.04  E-value=0.0012  Score=54.06  Aligned_cols=164  Identities=11%  Similarity=-0.018  Sum_probs=85.7

Q ss_pred             CCceEEEEeCCCCCeEEEEe------CCccEEEEeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCC-CeEEE
Q psy11529         55 DLKVTGIDWAPNTNRIVTCS------ADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGA-RLISV  127 (244)
Q Consensus        55 ~~~v~~~~~~~~~~~l~~~~------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-~~i~i  127 (244)
                      ...+.+.+++|+|+.++...      .|..-.||-... .+... .+ ..+  .......|+|+|..+++.... ..+++
T Consensus       349 ~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~~-~l-t~g--~~~t~PsWspDG~~lw~v~dg~~~~~v  423 (591)
T PRK13616        349 MGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL-GGVAV-QV-LEG--HSLTRPSWSLDADAVWVVVDGNTVVRV  423 (591)
T ss_pred             ccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC-CCcce-ee-ecC--CCCCCceECCCCCceEEEecCcceEEE
Confidence            34678899999999887665      244445554213 23222 22 122  237889999998888877543 22222


Q ss_pred             EEeecCCCceEEEee----ecCCCCceeEEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEe
Q psy11529        128 CYFESENDWWVAKHI----KKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVEL  203 (244)
Q Consensus       128 ~d~~~~~~~~~~~~~----~~~~~~~v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (244)
                      .+-......+.....    .......|..+.|+|||..++... +|+|++=-+...+--    .      ..........
T Consensus       424 ~~~~~~gql~~~~vd~ge~~~~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G----~------~~l~~~~~l~  492 (591)
T PRK13616        424 IRDPATGQLARTPVDASAVASRVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDG----Q------YALTNPREVG  492 (591)
T ss_pred             eccCCCceEEEEeccCchhhhccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCC----c------eeecccEEee
Confidence            221111111100000    002246799999999999887765 577777443211000    0      0011111111


Q ss_pred             cCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEe
Q psy11529        204 NNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRM  238 (244)
Q Consensus       204 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd  238 (244)
                      ..-   ...+.++.|..++.++ .+..++.-.+|.
T Consensus       493 ~~l---~~~~~~l~W~~~~~L~-V~~~~~~~~v~~  523 (591)
T PRK13616        493 PGL---GDTAVSLDWRTGDSLV-VGRSDPEHPVWY  523 (591)
T ss_pred             ccc---CCccccceEecCCEEE-EEecCCCCceEE
Confidence            111   3346789999998855 444444444554

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=98.00  E-value=0.0013  Score=49.01  Aligned_cols=155  Identities=8%  Similarity=0.183  Sum_probs=80.5

Q ss_pred             CCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCCC
Q psy11529          9 INPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDD   88 (244)
Q Consensus         9 ~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~   88 (244)
                      .+.+..+.-++||++++++.......-|+-..  ..+++....  ....|..+.|.|++...+.+ ..|.|+.=+  ...
T Consensus       144 ~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~--~~w~~~~r~--~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~--~~~  216 (302)
T PF14870_consen  144 SGSINDITRSSDGRYVAVSSRGNFYSSWDPGQ--TTWQPHNRN--SSRRIQSMGFSPDGNLWMLA-RGGQIQFSD--DPD  216 (302)
T ss_dssp             ---EEEEEE-TTS-EEEEETTSSEEEEE-TT---SS-EEEE----SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE---TT
T ss_pred             cceeEeEEECCCCcEEEEECcccEEEEecCCC--ccceEEccC--ccceehhceecCCCCEEEEe-CCcEEEEcc--CCC
Confidence            46788888899999999987655556677544  223443322  46889999999998876654 677777655  111


Q ss_pred             CC--ceeeEEEe-ccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEe
Q psy11529         89 KK--WKPTLVLL-RINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCG  165 (244)
Q Consensus        89 ~~--~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~  165 (244)
                      ..  +....... ...-.+..++|.+++...++|+ .|.+. ...+.++ .|............+..+.|.++.+-++.|
T Consensus       217 ~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l~-~S~DgGk-tW~~~~~~~~~~~n~~~i~f~~~~~gf~lG  293 (302)
T PF14870_consen  217 DGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGTLL-VSTDGGK-TWQKDRVGENVPSNLYRIVFVNPDKGFVLG  293 (302)
T ss_dssp             EEEEE---B-TTSS--S-EEEEEESSSS-EEEEES-TT-EE-EESSTTS-S-EE-GGGTTSSS---EEEEEETTEEEEE-
T ss_pred             CccccccccCCcccCceeeEEEEecCCCCEEEEeC-CccEE-EeCCCCc-cceECccccCCCCceEEEEEcCCCceEEEC
Confidence            11  00000101 1223478999998877666554 45442 2334443 344444444556788999998776666665


Q ss_pred             eCCCeEEEE
Q psy11529        166 STDFKVRVF  174 (244)
Q Consensus       166 ~~dg~i~i~  174 (244)
                       ++|.|.-|
T Consensus       294 -~~G~ll~~  301 (302)
T PF14870_consen  294 -QDGVLLRY  301 (302)
T ss_dssp             -STTEEEEE
T ss_pred             -CCcEEEEe
Confidence             67766544

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=97.96  E-value=0.0057  Score=48.82  Aligned_cols=119  Identities=13%  Similarity=0.243  Sum_probs=75.5

Q ss_pred             CCceEEEEeCCC----CCeEEEEeCCccEEEEeeeC---CCCCceeeEEEe---ccCcceEEEEECCCCCeEEEeeCCCe
Q psy11529         55 DLKVTGIDWAPN----TNRIVTCSADRNAYVWTQNN---DDKKWKPTLVLL---RINRAATCVKWSPLENKFAAGSGARL  124 (244)
Q Consensus        55 ~~~v~~~~~~~~----~~~l~~~~~d~~i~iwd~~~---~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~d~~  124 (244)
                      -+.|.++.|.|-    ...+++......|.+|.+..   +.+++.......   ..+--...+.|+|....|++-+....
T Consensus        56 FEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dv  135 (671)
T PF15390_consen   56 FEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDV  135 (671)
T ss_pred             cceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCce
Confidence            345889999983    32455556678999999531   122222111110   01112356899999999888877776


Q ss_pred             EEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEeeCC-CeEEEEEe
Q psy11529        125 ISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTD-FKVRVFSA  176 (244)
Q Consensus       125 i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d-g~i~i~d~  176 (244)
                      -.+++++....   .........+-|.|.+|.+||+.|+++-.. =.-++||-
T Consensus       136 SV~~sV~~d~s---rVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~  185 (671)
T PF15390_consen  136 SVLPSVHCDSS---RVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDS  185 (671)
T ss_pred             eEeeeeeeCCc---eEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecC
Confidence            66777776654   122222445889999999999877765433 35678885

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=97.89  E-value=0.0053  Score=46.04  Aligned_cols=152  Identities=13%  Similarity=0.011  Sum_probs=88.6

Q ss_pred             CeEEEEeCCccEEEEeeeCCCCCceeeEEEecc--Cc-ceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeec
Q psy11529         68 NRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRI--NR-AATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKK  144 (244)
Q Consensus        68 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~--~~-~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~  144 (244)
                      +.|.+-+.||++.-..++ ..|+........-+  .. .+..-++...+..++..+.+|.|+-.|+..............
T Consensus       148 ~~F~~lC~DGsl~~v~Ld-~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~  226 (342)
T PF06433_consen  148 RGFSMLCGDGSLLTVTLD-ADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLL  226 (342)
T ss_dssp             TEEEEEETTSCEEEEEET-STSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS
T ss_pred             CceEEEecCCceEEEEEC-CCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCccccc
Confidence            457788889999988852 35554322211111  11 222344444555666678889999888877764222221111


Q ss_pred             C--------CCCceeEEEecCCCCEEEEeeC--------CC--eEEEEEeeecccccCCCCCCCCccccccceeEEecCC
Q psy11529        145 P--------IKSTITCLDWHPNNHLLGCGST--------DF--KVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNS  206 (244)
Q Consensus       145 ~--------~~~~v~~~~~~p~~~~l~~~~~--------dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (244)
                      .        -.+.-.-+++++..+.|++--.        |+  .|-++|+                  .+++.+..+.. 
T Consensus       227 t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~------------------~t~krv~Ri~l-  287 (342)
T PF06433_consen  227 TDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDL------------------KTHKRVARIPL-  287 (342)
T ss_dssp             -HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEET------------------TTTEEEEEEEE-
T ss_pred             CccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEEC------------------CCCeEEEEEeC-
Confidence            1        0133445777765544443211        11  4666666                  78888888876 


Q ss_pred             CCCCCCeEEEEEecCCC-EEEEe-eCCCcEEEEeCCCC
Q psy11529        207 SSGGGWIHSVAFSKDGN-KLCWT-SHDGSINVRMSQQV  242 (244)
Q Consensus       207 ~~~~~~v~~~~~s~~~~-~l~~~-~~dg~i~vwd~~~~  242 (244)
                         ..++.+++.+.|.+ +|++. ..++.+.+||..+.
T Consensus       288 ---~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tG  322 (342)
T PF06433_consen  288 ---EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATG  322 (342)
T ss_dssp             ---EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT-
T ss_pred             ---CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCC
Confidence               55688999999877 66554 45889999998764

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG4649|consensus

Probab=97.86  E-value=0.0044  Score=44.34  Aligned_cols=64  Identities=11%  Similarity=-0.052  Sum_probs=44.1

Q ss_pred             CCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCCCCC
Q psy11529         21 RQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKK   90 (244)
Q Consensus        21 ~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~   90 (244)
                      |++++.|...|.+++.+.++  +  .+...+..-+.--......+++..+..++.|++.+..|  ..+..
T Consensus        63 gdfVV~GCy~g~lYfl~~~t--G--s~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD--~~~~~  126 (354)
T KOG4649|consen   63 GDFVVLGCYSGGLYFLCVKT--G--SQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALD--PKTYG  126 (354)
T ss_pred             CCEEEEEEccCcEEEEEecc--h--hheeeeeehhhhccceEEcCCCceEEEecCCCcEEEec--ccccc
Confidence            56788888899999999887  4  34444442222112334567899999999999999888  44443

>KOG2395|consensus

Probab=97.86  E-value=0.00076  Score=52.72  Aligned_cols=140  Identities=14%  Similarity=0.091  Sum_probs=86.4

Q ss_pred             EEeCCccEEEEeeeCCCCCceeeEEEeccCcceEEEEECCCCC-------eEEEeeCCCeEEEEEeecCCCceEEEeeec
Q psy11529         72 TCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLEN-------KFAAGSGARLISVCYFESENDWWVAKHIKK  144 (244)
Q Consensus        72 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-------~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~  144 (244)
                      ++.....++-.|  ++.|+.+....+   ...|+-+.+.|+.+       .-+.|-.+..|.-||.+....-........
T Consensus       351 ~~~~~~~l~klD--IE~GKIVeEWk~---~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~k  425 (644)
T KOG2395|consen  351 DGGEQDKLYKLD--IERGKIVEEWKF---EDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSK  425 (644)
T ss_pred             CCCCcCcceeee--cccceeeeEeec---cCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecc
Confidence            344445566666  788875554443   23377777877632       233455678888999886654111111111


Q ss_pred             --CCCCceeEEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCC
Q psy11529        145 --PIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDG  222 (244)
Q Consensus       145 --~~~~~v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~  222 (244)
                        .......|++-..+| +||+|+.+|.|++||-                  ...+....+++-   +.+|..+..+.||
T Consensus       426 qy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr------------------i~~~AKTAlPgL---G~~I~hVdvtadG  483 (644)
T KOG2395|consen  426 QYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDR------------------IGRRAKTALPGL---GDAIKHVDVTADG  483 (644)
T ss_pred             ccccccccceeeecCCc-eEEEeecCCcEEeehh------------------hhhhhhhccccc---CCceeeEEeeccC
Confidence              112344555555455 8999999999999995                  112222335555   8899999999999


Q ss_pred             CEEEEeeCCCcEEEEeC
Q psy11529        223 NKLCWTSHDGSINVRMS  239 (244)
Q Consensus       223 ~~l~~~~~dg~i~vwd~  239 (244)
                      ++|+..+ +.++.+-++
T Consensus       484 Kwil~Tc-~tyLlLi~t  499 (644)
T KOG2395|consen  484 KWILATC-KTYLLLIDT  499 (644)
T ss_pred             cEEEEec-ccEEEEEEE
Confidence            9887554 556666554

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.85  E-value=0.0053  Score=44.74  Aligned_cols=162  Identities=13%  Similarity=0.219  Sum_probs=100.8

Q ss_pred             CceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeee--ccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCC
Q psy11529         10 NPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVL--DGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNND   87 (244)
Q Consensus        10 ~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~   87 (244)
                      ..|.++.|+|+.+.|++..+...-.|+=...  +  ..+.++  .+. ..-..+.+..++++.++--.++.+.++.++..
T Consensus        86 ~nvS~LTynp~~rtLFav~n~p~~iVElt~~--G--dlirtiPL~g~-~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~  160 (316)
T COG3204          86 ANVSSLTYNPDTRTLFAVTNKPAAIVELTKE--G--DLIRTIPLTGF-SDPETIEYIGGNQFVIVDERDRALYLFTVDAD  160 (316)
T ss_pred             ccccceeeCCCcceEEEecCCCceEEEEecC--C--ceEEEeccccc-CChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence            4489999999998877776655555544333  3  444443  332 22346778777877777777888888884322


Q ss_pred             CCCcee---eEEE--ecc-CcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCC------CCceeEEEe
Q psy11529         88 DKKWKP---TLVL--LRI-NRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPI------KSTITCLDW  155 (244)
Q Consensus        88 ~~~~~~---~~~~--~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~------~~~v~~~~~  155 (244)
                      +.....   .+.+  ..+ +.....++|.|.+..|..+-+..-+.||.+..............+.      -..+.++.|
T Consensus       161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~  240 (316)
T COG3204         161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEF  240 (316)
T ss_pred             ccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecccccee
Confidence            221100   1111  112 5567899999999999998888888888877443200001111110      135778889


Q ss_pred             cC-CCCEEEEeeCCCeEEEEEe
Q psy11529        156 HP-NNHLLGCGSTDFKVRVFSA  176 (244)
Q Consensus       156 ~p-~~~~l~~~~~dg~i~i~d~  176 (244)
                      ++ .+.+|+-+.+++.+.-.|.
T Consensus       241 ~~~~~~LLVLS~ESr~l~Evd~  262 (316)
T COG3204         241 NAITNSLLVLSDESRRLLEVDL  262 (316)
T ss_pred             cCCCCcEEEEecCCceEEEEec
Confidence            87 5567777777888888875

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=97.82  E-value=0.006  Score=44.59  Aligned_cols=151  Identities=16%  Similarity=0.148  Sum_probs=92.0

Q ss_pred             ceEEEEEcCCCCeEEEec---CCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCC
Q psy11529         11 PVTTHAWNNTRQQLAFTP---NNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNND   87 (244)
Q Consensus        11 ~v~~~~~~~~~~~l~~~~---~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~   87 (244)
                      .+.+.+++++++.+|...   ....++++...+     .....+.  ...+....|++++...+....+...+++.- ..
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~-----~~~~~~~--g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~-~~   96 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGG-----PVRPVLT--GGSLTRPSWDPDGWVWTVDDGSGGVRVVRD-SA   96 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCC-----cceeecc--CCccccccccCCCCEEEEEcCCCceEEEEe-cC
Confidence            688899999999877655   334566655544     2222223  237788899999877766665666666630 23


Q ss_pred             CCCceeeE-EEeccCcceEEEEECCCCCeEEEee---CCCeEEEEEeecCCCc---e--EEEeeecCCCCceeEEEecCC
Q psy11529         88 DKKWKPTL-VLLRINRAATCVKWSPLENKFAAGS---GARLISVCYFESENDW---W--VAKHIKKPIKSTITCLDWHPN  158 (244)
Q Consensus        88 ~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~---~d~~i~i~d~~~~~~~---~--~~~~~~~~~~~~v~~~~~~p~  158 (244)
                      .+...... ........|..+.++|||..++...   .++.+.+--+.....-   .  ............+..++|.++
T Consensus        97 ~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~  176 (253)
T PF10647_consen   97 SGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDD  176 (253)
T ss_pred             CCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCC
Confidence            33322221 1111222899999999999987765   3567777655433221   0  111222223468899999999


Q ss_pred             CCEEEEeeCCC
Q psy11529        159 NHLLGCGSTDF  169 (244)
Q Consensus       159 ~~~l~~~~~dg  169 (244)
                      +.+++.+...+
T Consensus       177 ~~L~V~~~~~~  187 (253)
T PF10647_consen  177 STLVVLGRSAG  187 (253)
T ss_pred             CEEEEEeCCCC
Confidence            98777766544

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=97.80  E-value=0.0051  Score=47.70  Aligned_cols=106  Identities=9%  Similarity=0.041  Sum_probs=57.5

Q ss_pred             ceEEEEeCCCCCeEEEEe-----------CCc-cEEEEeeeCC--CCCceeeEEEeccCcceEEEEECCCCCeEEEeeCC
Q psy11529         57 KVTGIDWAPNTNRIVTCS-----------ADR-NAYVWTQNND--DKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGA  122 (244)
Q Consensus        57 ~v~~~~~~~~~~~l~~~~-----------~d~-~i~iwd~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  122 (244)
                      ....++|.++|+.+++-.           ..+ .|.+++  -.  ++.......+...-.....+++.+++  |+++...
T Consensus        15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~--d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~   90 (367)
T TIGR02604        15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILE--DADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPP   90 (367)
T ss_pred             CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEE--cCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCC
Confidence            446789999998776642           223 677776  33  33332223333334456889999988  4444444


Q ss_pred             CeEEEEEeecCC----CceEEEeeecC----CCCceeEEEecCCCCEEEEee
Q psy11529        123 RLISVCYFESEN----DWWVAKHIKKP----IKSTITCLDWHPNNHLLGCGS  166 (244)
Q Consensus       123 ~~i~i~d~~~~~----~~~~~~~~~~~----~~~~v~~~~~~p~~~~l~~~~  166 (244)
                      ...++.|.+...    ...........    +......+.|.|||.+.++-+
T Consensus        91 ~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G  142 (367)
T TIGR02604        91 DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHG  142 (367)
T ss_pred             eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecc
Confidence            433343443321    10111111111    124577899999998665544

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=97.80  E-value=0.0066  Score=44.40  Aligned_cols=155  Identities=18%  Similarity=0.149  Sum_probs=90.6

Q ss_pred             ceEEEEeCCCCCeEEEEe---CCccEEEEeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEE-eec
Q psy11529         57 KVTGIDWAPNTNRIVTCS---ADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCY-FES  132 (244)
Q Consensus        57 ~v~~~~~~~~~~~l~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d-~~~  132 (244)
                      .+.+.+++++++.++...   ....+.++.  ..... . .. .  ....+....|++++...++...+...+++. ...
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~--~~~~~-~-~~-~--~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~   97 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGP--AGGPV-R-PV-L--TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSAS   97 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEc--CCCcc-e-ee-c--cCCccccccccCCCCEEEEEcCCCceEEEEecCC
Confidence            688999999999887665   234455554  32221 1 11 1  234778889999987777766666666664 222


Q ss_pred             CCCceEEEeeecCCC-CceeEEEecCCCCEEEEee---CCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCC
Q psy11529        133 ENDWWVAKHIKKPIK-STITCLDWHPNNHLLGCGS---TDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSS  208 (244)
Q Consensus       133 ~~~~~~~~~~~~~~~-~~v~~~~~~p~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (244)
                      +..  .......... ..|..+.++|||..++.-.   .++.|.+--+....-.         ...............  
T Consensus        98 g~~--~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g---------~~~~l~~~~~~~~~~--  164 (253)
T PF10647_consen   98 GTG--EPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDG---------VPRRLTGPRRVAPPL--  164 (253)
T ss_pred             Ccc--eeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCC---------CcceeccceEecccc--
Confidence            222  1112222212 2899999999998776655   3577877766322110         000111222222222  


Q ss_pred             CCCCeEEEEEecCCCEEEEeeCCC
Q psy11529        209 GGGWIHSVAFSKDGNKLCWTSHDG  232 (244)
Q Consensus       209 ~~~~v~~~~~s~~~~~l~~~~~dg  232 (244)
                       ...+..+.|.+++.+++.+...+
T Consensus       165 -~~~v~~v~W~~~~~L~V~~~~~~  187 (253)
T PF10647_consen  165 -LSDVTDVAWSDDSTLVVLGRSAG  187 (253)
T ss_pred             -cCcceeeeecCCCEEEEEeCCCC
Confidence             56789999999998777665443

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.78  E-value=0.0082  Score=45.05  Aligned_cols=147  Identities=12%  Similarity=-0.034  Sum_probs=90.1

Q ss_pred             CceEEEEeCCCCCeEEEEeC---------CccEEEEeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeC-CCeE
Q psy11529         56 LKVTGIDWAPNTNRIVTCSA---------DRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSG-ARLI  125 (244)
Q Consensus        56 ~~v~~~~~~~~~~~l~~~~~---------d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i  125 (244)
                      ..-+.+...|+|.+.++...         -..-.+|.++. .+...  .....+-...+.++||||++.|+.+.. .+.|
T Consensus       111 ~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~--~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i  187 (307)
T COG3386         111 NRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVV--RLLDDDLTIPNGLAFSPDGKTLYVADTPANRI  187 (307)
T ss_pred             CCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEE--EeecCcEEecCceEECCCCCEEEEEeCCCCeE
Confidence            45577888999887665433         01124555313 33321  122233456679999999988887765 4778


Q ss_pred             EEEEeecCC-Cce--EEEeeecCCCCceeEEEecCCCCEEEEeeCCC-eEEEEEeeecccccCCCCCCCCccccccceeE
Q psy11529        126 SVCYFESEN-DWW--VAKHIKKPIKSTITCLDWHPNNHLLGCGSTDF-KVRVFSAYIKDIESAPQSTNWGSKSTLGNCLV  201 (244)
Q Consensus       126 ~i~d~~~~~-~~~--~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (244)
                      .-|++.... ...  ..........+..-.++...+|++.+++...| .|.+|+.                   .++.+.
T Consensus       188 ~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~p-------------------dG~l~~  248 (307)
T COG3386         188 HRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNP-------------------DGKLLG  248 (307)
T ss_pred             EEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECC-------------------CCcEEE
Confidence            888776311 100  11122222346666788888888776555554 8999996                   488888


Q ss_pred             EecCCCCCCCCeEEEEEec-CCCEEEE
Q psy11529        202 ELNNSSSGGGWIHSVAFSK-DGNKLCW  227 (244)
Q Consensus       202 ~~~~~~~~~~~v~~~~~s~-~~~~l~~  227 (244)
                      .+..+   ...+++++|-- +.+.|+.
T Consensus       249 ~i~lP---~~~~t~~~FgG~~~~~L~i  272 (307)
T COG3386         249 EIKLP---VKRPTNPAFGGPDLNTLYI  272 (307)
T ss_pred             EEECC---CCCCccceEeCCCcCEEEE
Confidence            88876   57788888864 4454433

>KOG2079|consensus

Probab=97.78  E-value=0.00018  Score=60.46  Aligned_cols=103  Identities=15%  Similarity=0.154  Sum_probs=72.0

Q ss_pred             CCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCc
Q psy11529        113 ENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGS  192 (244)
Q Consensus       113 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  192 (244)
                      +..++.|+..|.+...|+...-.   .........++|++++|+.+|+.++.|-.+|.|.+||+                
T Consensus        99 ~~~ivi~Ts~ghvl~~d~~~nL~---~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~----------------  159 (1206)
T KOG2079|consen   99 VVPIVIGTSHGHVLLSDMTGNLG---PLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDM----------------  159 (1206)
T ss_pred             eeeEEEEcCchhhhhhhhhcccc---hhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEc----------------
Confidence            45688899999998888776421   11223334579999999999999999999999999999                


Q ss_pred             cccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEe
Q psy11529        193 KSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRM  238 (244)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd  238 (244)
                        ..++.++.+..+..+...+..+.+..++..++++..-|+  +|.
T Consensus       160 --~~~k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~  201 (1206)
T KOG2079|consen  160 --HRAKILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWK  201 (1206)
T ss_pred             --cCCcceeeeeecCCccceEEEEEEeCCCcEEEEccCCCc--eEE
Confidence              566777777666211233334444445667777777775  554

>KOG3630|consensus

Probab=97.75  E-value=0.0015  Score=55.75  Aligned_cols=147  Identities=13%  Similarity=0.093  Sum_probs=90.1

Q ss_pred             CceEEEEeCCCCCeEEEE--eCCccEEEEeeeCCCCCcee---eE------EEeccCcceEEEEECCC-CCeEEEeeCCC
Q psy11529         56 LKVTGIDWAPNTNRIVTC--SADRNAYVWTQNNDDKKWKP---TL------VLLRINRAATCVKWSPL-ENKFAAGSGAR  123 (244)
Q Consensus        56 ~~v~~~~~~~~~~~l~~~--~~d~~i~iwd~~~~~~~~~~---~~------~~~~~~~~v~~~~~~~~-~~~l~~~~~d~  123 (244)
                      -++..+...+|+...+..  +.+-.|..||+  +.-....   ..      ..........++.|+|. ....+++..|+
T Consensus       101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~--~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dl  178 (1405)
T KOG3630|consen  101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDL--EEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDL  178 (1405)
T ss_pred             ccceEEEeccCCceEEEEEecCCceEEEEeh--HhhhhhhhhhccccccccchhccccccccccccCCccchhhhhcccc
Confidence            355666667776654433  33457888994  3321110   00      11122345668899987 33467777889


Q ss_pred             eEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEe
Q psy11529        124 LISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVEL  203 (244)
Q Consensus       124 ~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (244)
                      .|++..+.....    .....+.....++++|+|.|+.++.|...|++.-|...                   .+....+
T Consensus       179 sl~V~~~~~~~~----~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-------------------leik~~i  235 (1405)
T KOG3630|consen  179 SLRVKSTKQLAQ----NVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-------------------LEIKSEI  235 (1405)
T ss_pred             chhhhhhhhhhh----hhcccCcccceeeEEeccccceeeEecCCCeEEEeecc-------------------cceeecc
Confidence            898876655432    12223455788999999999999999999999988752                   3322222


Q ss_pred             cCCCCC-CCCeEEEEEecCCCEEEE
Q psy11529        204 NNSSSG-GGWIHSVAFSKDGNKLCW  227 (244)
Q Consensus       204 ~~~~~~-~~~v~~~~~s~~~~~l~~  227 (244)
                      ...... ...|.++.|-....++++
T Consensus       236 p~Pp~~e~yrvl~v~Wl~t~eflvv  260 (1405)
T KOG3630|consen  236 PEPPVEENYRVLSVTWLSTQEFLVV  260 (1405)
T ss_pred             cCCCcCCCcceeEEEEecceeEEEE
Confidence            221100 367888888776666654

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.71  E-value=0.0093  Score=43.52  Aligned_cols=124  Identities=14%  Similarity=0.181  Sum_probs=87.8

Q ss_pred             eccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEe
Q psy11529         51 LDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYF  130 (244)
Q Consensus        51 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~  130 (244)
                      +.+-...+.++.|+|+.+.|++......-.++=  ...|+....+.+.+ -.....+.+..++++.++--.++.+.++.+
T Consensus        81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVEl--t~~GdlirtiPL~g-~~DpE~Ieyig~n~fvi~dER~~~l~~~~v  157 (316)
T COG3204          81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVEL--TKEGDLIRTIPLTG-FSDPETIEYIGGNQFVIVDERDRALYLFTV  157 (316)
T ss_pred             cccccccccceeeCCCcceEEEecCCCceEEEE--ecCCceEEEecccc-cCChhHeEEecCCEEEEEehhcceEEEEEE
Confidence            344556699999999999888887777666665  56777666655443 455667888888888888888999999888


Q ss_pred             ecCCCceEEEe---ee--cCC-CCceeEEEecCCCCEEEEeeCCCeEEEEEee
Q psy11529        131 ESENDWWVAKH---IK--KPI-KSTITCLDWHPNNHLLGCGSTDFKVRVFSAY  177 (244)
Q Consensus       131 ~~~~~~~~~~~---~~--~~~-~~~v~~~~~~p~~~~l~~~~~dg~i~i~d~~  177 (244)
                      +..........   ..  ..+ +.....++|+|....|..+-+..-+.||...
T Consensus       158 d~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~  210 (316)
T COG3204         158 DADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVT  210 (316)
T ss_pred             cCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEe
Confidence            77754221111   11  111 4567889999988888877777777777764

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.70  E-value=0.016  Score=45.82  Aligned_cols=114  Identities=11%  Similarity=0.169  Sum_probs=66.8

Q ss_pred             eEEEEEcCCCCeEEEe-c----CCCeEEEeeeccCCCcceeee-eeccCCCceEEEEeCCCCCeEEEEeCCc--------
Q psy11529         12 VTTHAWNNTRQQLAFT-P----NNQEVHLYQYEKAANDWSQLD-VLDGHDLKVTGIDWAPNTNRIVTCSADR--------   77 (244)
Q Consensus        12 v~~~~~~~~~~~l~~~-~----~d~~v~v~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d~--------   77 (244)
                      +....++|||+++|.+ +    ....++++|+.+  +  +.+. .+...  .-..+.|.++++.|+....+.        
T Consensus       126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~t--g--~~l~d~i~~~--~~~~~~W~~d~~~~~y~~~~~~~~~~~~~  199 (414)
T PF02897_consen  126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLET--G--KFLPDGIENP--KFSSVSWSDDGKGFFYTRFDEDQRTSDSG  199 (414)
T ss_dssp             EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTT--T--EEEEEEEEEE--ESEEEEECTTSSEEEEEECSTTTSS-CCG
T ss_pred             eeeeeECCCCCEEEEEecCCCCceEEEEEEECCC--C--cCcCCccccc--ccceEEEeCCCCEEEEEEeCcccccccCC
Confidence            3467899999999876 2    224699999987  4  3322 22221  122499999988776554332        


Q ss_pred             ---cEEEEeeeCCCCCceeeEEEeccCcc--eEEEEECCCCCeEEEeeC---C-CeEEEEEeecC
Q psy11529         78 ---NAYVWTQNNDDKKWKPTLVLLRINRA--ATCVKWSPLENKFAAGSG---A-RLISVCYFESE  133 (244)
Q Consensus        78 ---~i~iwd~~~~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~l~~~~~---d-~~i~i~d~~~~  133 (244)
                         .|+.|+  +.+........+......  ...+..++++++++....   + ..+.+.++...
T Consensus       200 ~~~~v~~~~--~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~  262 (414)
T PF02897_consen  200 YPRQVYRHK--LGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDG  262 (414)
T ss_dssp             CCEEEEEEE--TTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCT
T ss_pred             CCcEEEEEE--CCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEecccc
Confidence               367777  555543322333333322  568889999999776433   2 34666666553

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=97.69  E-value=0.013  Score=44.83  Aligned_cols=147  Identities=10%  Similarity=0.098  Sum_probs=69.6

Q ss_pred             EEcCCCCeEEEecC-C--CeEEEeeeccCCCcceeeeeeccCC-CceEEEEeCCCCCeEEEEeCCccEEEEeeeCCCCCc
Q psy11529         16 AWNNTRQQLAFTPN-N--QEVHLYQYEKAANDWSQLDVLDGHD-LKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKW   91 (244)
Q Consensus        16 ~~~~~~~~l~~~~~-d--~~v~v~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~   91 (244)
                      +|.+||+.|+.++. +  ..+.+.|+.+     ..+..+.... .......++|+.+.++.......+.-.|  +.+.+.
T Consensus        42 ~ft~dG~kllF~s~~dg~~nly~lDL~t-----~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vd--L~T~e~  114 (386)
T PF14583_consen   42 CFTDDGRKLLFASDFDGNRNLYLLDLAT-----GEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVD--LDTLEE  114 (386)
T ss_dssp             -B-TTS-EEEEEE-TTSS-EEEEEETTT------EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEE--TTT--E
T ss_pred             CcCCCCCEEEEEeccCCCcceEEEEccc-----CEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEE--CCcCcE
Confidence            46788987776654 4  4566667777     4445555433 2233466778888877665566777777  788775


Q ss_pred             eeeEEEeccCcceEEEEE--CCCCCeEEEeeC---C-------------------CeEEEEEeecCCCceEEEeeecCCC
Q psy11529         92 KPTLVLLRINRAATCVKW--SPLENKFAAGSG---A-------------------RLISVCYFESENDWWVAKHIKKPIK  147 (244)
Q Consensus        92 ~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~~---d-------------------~~i~i~d~~~~~~~~~~~~~~~~~~  147 (244)
                      ......+  ...+-...|  +.++..++-.-.   |                   ..|.-.|+.+++.     .......
T Consensus       115 ~~vy~~p--~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~-----~~v~~~~  187 (386)
T PF14583_consen  115 RVVYEVP--DDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGER-----KVVFEDT  187 (386)
T ss_dssp             EEEEE----TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--E-----EEEEEES
T ss_pred             EEEEECC--cccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCce-----eEEEecC
Confidence            4444432  333333455  345555443211   1                   1233334444432     2222234


Q ss_pred             CceeEEEecCCCC-EEEEeeCCC-----eEEEEEee
Q psy11529        148 STITCLDWHPNNH-LLGCGSTDF-----KVRVFSAY  177 (244)
Q Consensus       148 ~~v~~~~~~p~~~-~l~~~~~dg-----~i~i~d~~  177 (244)
                      ..+..+.|+|... +|+.| .+|     .-+||-++
T Consensus       188 ~wlgH~~fsP~dp~li~fC-HEGpw~~Vd~RiW~i~  222 (386)
T PF14583_consen  188 DWLGHVQFSPTDPTLIMFC-HEGPWDLVDQRIWTIN  222 (386)
T ss_dssp             S-EEEEEEETTEEEEEEEE-E-S-TTTSS-SEEEEE
T ss_pred             ccccCcccCCCCCCEEEEe-ccCCcceeceEEEEEE
Confidence            6788999999554 45444 333     23677775

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.69  E-value=0.012  Score=44.22  Aligned_cols=150  Identities=11%  Similarity=0.090  Sum_probs=81.5

Q ss_pred             EEEcCCCCeEE-EecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCCCCCcee
Q psy11529         15 HAWNNTRQQLA-FTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKWKP   93 (244)
Q Consensus        15 ~~~~~~~~~l~-~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~   93 (244)
                      ..|.++...|+ +--..+.|.-|+..+     .....+. +...+.++..-..+..|+++.  .-+.+++  .+++....
T Consensus        30 P~w~~~~~~L~w~DI~~~~i~r~~~~~-----g~~~~~~-~p~~~~~~~~~d~~g~Lv~~~--~g~~~~~--~~~~~~~t   99 (307)
T COG3386          30 PVWDPDRGALLWVDILGGRIHRLDPET-----GKKRVFP-SPGGFSSGALIDAGGRLIACE--HGVRLLD--PDTGGKIT   99 (307)
T ss_pred             ccCcCCCCEEEEEeCCCCeEEEecCCc-----CceEEEE-CCCCcccceeecCCCeEEEEc--cccEEEe--ccCCceeE
Confidence            34667666444 334567788888765     2333444 233334444333344555543  3456677  44444311


Q ss_pred             eEEEec---cCcceEEEEECCCCCeEEEeeC---------CCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCE
Q psy11529         94 TLVLLR---INRAATCVKWSPLENKFAAGSG---------ARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHL  161 (244)
Q Consensus        94 ~~~~~~---~~~~v~~~~~~~~~~~l~~~~~---------d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~  161 (244)
                      .+....   .....+.+...|+|.+.+....         ...-.+|.++....   .......+-..-+.++||||++.
T Consensus       100 ~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~---~~~l~~~~~~~~NGla~SpDg~t  176 (307)
T COG3386         100 LLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGG---VVRLLDDDLTIPNGLAFSPDGKT  176 (307)
T ss_pred             EeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCC---EEEeecCcEEecCceEECCCCCE
Confidence            111111   2245678888999887665433         11224555553222   22333333355678999999987


Q ss_pred             EEEeeC-CCeEEEEEee
Q psy11529        162 LGCGST-DFKVRVFSAY  177 (244)
Q Consensus       162 l~~~~~-dg~i~i~d~~  177 (244)
                      |+.+.. .+.|.-|++.
T Consensus       177 ly~aDT~~~~i~r~~~d  193 (307)
T COG3386         177 LYVADTPANRIHRYDLD  193 (307)
T ss_pred             EEEEeCCCCeEEEEecC
Confidence            776654 4788888774

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=97.68  E-value=0.0002  Score=37.03  Aligned_cols=32  Identities=22%  Similarity=0.367  Sum_probs=29.7

Q ss_pred             CCceEEEEEcCCCCeEEEecCCCeEEEeeecc
Q psy11529          9 INPVTTHAWNNTRQQLAFTPNNQEVHLYQYEK   40 (244)
Q Consensus         9 ~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~   40 (244)
                      ..+|.+++|+|...+||.++.+|.|.+|.++.
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~   42 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLNW   42 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEECCC
Confidence            57899999999999999999999999999955

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.66  E-value=0.013  Score=43.54  Aligned_cols=149  Identities=11%  Similarity=0.125  Sum_probs=87.6

Q ss_pred             CCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCCCCCceeeE---
Q psy11529         19 NTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKWKPTL---   95 (244)
Q Consensus        19 ~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~---   95 (244)
                      ..++.|+.|+++| +.+++.... .  ......  +...|..+...|+-+.|+.-+ |+.+.++++  ..-......   
T Consensus         5 ~~~~~L~vGt~~G-l~~~~~~~~-~--~~~~i~--~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L--~~l~~~~~~~~~   75 (275)
T PF00780_consen    5 SWGDRLLVGTEDG-LYVYDLSDP-S--KPTRIL--KLSSITQLSVLPELNLLLVLS-DGQLYVYDL--DSLEPVSTSAPL   75 (275)
T ss_pred             cCCCEEEEEECCC-EEEEEecCC-c--cceeEe--ecceEEEEEEecccCEEEEEc-CCccEEEEc--hhhccccccccc
Confidence            4578899998888 999999431 1  222222  233499999999877777665 599999994  332211100   


Q ss_pred             ---------EEeccCcceEEEE--ECCCCCeEEEeeCCCeEEEEEeecCCCce--EEEeeecCCCCceeEEEecCCCCEE
Q psy11529         96 ---------VLLRINRAATCVK--WSPLENKFAAGSGARLISVCYFESENDWW--VAKHIKKPIKSTITCLDWHPNNHLL  162 (244)
Q Consensus        96 ---------~~~~~~~~v~~~~--~~~~~~~l~~~~~d~~i~i~d~~~~~~~~--~~~~~~~~~~~~v~~~~~~p~~~~l  162 (244)
                               ........+...+  -.+.+...++.....+|.+|.+......+  ....  ......+..++|.  ++.+
T Consensus        76 ~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke--~~lp~~~~~i~~~--~~~i  151 (275)
T PF00780_consen   76 AFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKE--ISLPDPPSSIAFL--GNKI  151 (275)
T ss_pred             cccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEE--EEcCCCcEEEEEe--CCEE
Confidence                     0111223344444  12234444444455689999998753211  1222  2234788999998  5567


Q ss_pred             EEeeCCCeEEEEEeeeccc
Q psy11529        163 GCGSTDFKVRVFSAYIKDI  181 (244)
Q Consensus       163 ~~~~~dg~i~i~d~~~~~~  181 (244)
                      +.|..++ ..+.|+.+...
T Consensus       152 ~v~~~~~-f~~idl~~~~~  169 (275)
T PF00780_consen  152 CVGTSKG-FYLIDLNTGSP  169 (275)
T ss_pred             EEEeCCc-eEEEecCCCCc
Confidence            7776444 77888864443

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>KOG4441|consensus

Probab=97.65  E-value=0.0052  Score=50.36  Aligned_cols=189  Identities=12%  Similarity=0.157  Sum_probs=100.7

Q ss_pred             CCCeEEEecCC------CeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCc-----cEEEEeeeCCC
Q psy11529         20 TRQQLAFTPNN------QEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADR-----NAYVWTQNNDD   88 (244)
Q Consensus        20 ~~~~l~~~~~d------~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-----~i~iwd~~~~~   88 (244)
                      ++..+++|+.+      ..+..||...  +.|.....+...........+  +|...+.|+.||     ++-.||  ..+
T Consensus       332 ~~~lYv~GG~~~~~~~l~~ve~YD~~~--~~W~~~a~M~~~R~~~~v~~l--~g~iYavGG~dg~~~l~svE~YD--p~~  405 (571)
T KOG4441|consen  332 NGKLYVVGGYDSGSDRLSSVERYDPRT--NQWTPVAPMNTKRSDFGVAVL--DGKLYAVGGFDGEKSLNSVECYD--PVT  405 (571)
T ss_pred             CCEEEEEccccCCCcccceEEEecCCC--CceeccCCccCccccceeEEE--CCEEEEEeccccccccccEEEec--CCC
Confidence            45678888888      3577788777  666665555433222222222  577888888875     477788  677


Q ss_pred             CCceeeEEEeccCcceEEEEECCCCCeEEEeeCCC------eEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEE
Q psy11529         89 KKWKPTLVLLRINRAATCVKWSPLENKFAAGSGAR------LISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLL  162 (244)
Q Consensus        89 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~------~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l  162 (244)
                      .++.....+.......-.+.+  +|...++|+.++      .+..||..++.  |.............. ++.- ++.+.
T Consensus       406 ~~W~~va~m~~~r~~~gv~~~--~g~iYi~GG~~~~~~~l~sve~YDP~t~~--W~~~~~M~~~R~~~g-~a~~-~~~iY  479 (571)
T KOG4441|consen  406 NKWTPVAPMLTRRSGHGVAVL--GGKLYIIGGGDGSSNCLNSVECYDPETNT--WTLIAPMNTRRSGFG-VAVL-NGKIY  479 (571)
T ss_pred             CcccccCCCCcceeeeEEEEE--CCEEEEEcCcCCCccccceEEEEcCCCCc--eeecCCcccccccce-EEEE-CCEEE
Confidence            665544332222222222333  567777777554      45666665553  222222222112222 2222 56677


Q ss_pred             EEeeCCC-----eEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCc----
Q psy11529        163 GCGSTDF-----KVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGS----  233 (244)
Q Consensus       163 ~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~----  233 (244)
                      +.|+.|+     ++..||..+.                ....+..+...   ...+..+.+  +++..+.|+.||.    
T Consensus       480 vvGG~~~~~~~~~VE~ydp~~~----------------~W~~v~~m~~~---rs~~g~~~~--~~~ly~vGG~~~~~~l~  538 (571)
T KOG4441|consen  480 VVGGFDGTSALSSVERYDPETN----------------QWTMVAPMTSP---RSAVGVVVL--GGKLYAVGGFDGNNNLN  538 (571)
T ss_pred             EECCccCCCccceEEEEcCCCC----------------ceeEcccCccc---cccccEEEE--CCEEEEEecccCccccc
Confidence            8888776     2566776321                23333323222   222222222  6777788888764    


Q ss_pred             -EEEEeCCC
Q psy11529        234 -INVRMSQQ  241 (244)
Q Consensus       234 -i~vwd~~~  241 (244)
                       |..||..+
T Consensus       539 ~ve~ydp~~  547 (571)
T KOG4441|consen  539 TVECYDPET  547 (571)
T ss_pred             eeEEcCCCC
Confidence             66666543

>KOG4649|consensus

Probab=97.64  E-value=0.011  Score=42.41  Aligned_cols=101  Identities=11%  Similarity=0.080  Sum_probs=68.8

Q ss_pred             CCeEEEEeCCccEEEEeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCC
Q psy11529         67 TNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPI  146 (244)
Q Consensus        67 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~  146 (244)
                      ..+++.|+..+.+.--|  ..+++......+   ...+.+-+.- -|++++.|+..|.+++.+.+++.+.|......   
T Consensus        23 kT~v~igSHs~~~~avd--~~sG~~~We~il---g~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~---   93 (354)
T KOG4649|consen   23 KTLVVIGSHSGIVIAVD--PQSGNLIWEAIL---GVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILE---   93 (354)
T ss_pred             ceEEEEecCCceEEEec--CCCCcEEeehhh---CceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehh---
Confidence            45677788888888888  788875544332   2222221111 36789999999999999999997644333221   


Q ss_pred             CCceeEEEecCCCCEEEEeeCCCeEEEEEee
Q psy11529        147 KSTITCLDWHPNNHLLGCGSTDFKVRVFSAY  177 (244)
Q Consensus       147 ~~~v~~~~~~p~~~~l~~~~~dg~i~i~d~~  177 (244)
                       .--......+++.++..|+.|+..+..|.+
T Consensus        94 -~vk~~a~~d~~~glIycgshd~~~yalD~~  123 (354)
T KOG4649|consen   94 -TVKVRAQCDFDGGLIYCGSHDGNFYALDPK  123 (354)
T ss_pred             -hhccceEEcCCCceEEEecCCCcEEEeccc
Confidence             111234556789999999999999999983

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=97.64  E-value=0.021  Score=46.17  Aligned_cols=78  Identities=9%  Similarity=-0.050  Sum_probs=46.4

Q ss_pred             EEeCCCCCeEEEEeCCc------------------cEEEEeeeCCCCCceeeEEEeccCc----ceEEEEEC----CCCC
Q psy11529         61 IDWAPNTNRIVTCSADR------------------NAYVWTQNNDDKKWKPTLVLLRINR----AATCVKWS----PLEN  114 (244)
Q Consensus        61 ~~~~~~~~~l~~~~~d~------------------~i~iwd~~~~~~~~~~~~~~~~~~~----~v~~~~~~----~~~~  114 (244)
                      .++.+.+..++.++.++                  .+.-+|  ..+++..-......+..    ......+.    -++.
T Consensus       222 pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald--~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~  299 (488)
T cd00216         222 PTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALD--ADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGK  299 (488)
T ss_pred             eeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEc--CCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCC
Confidence            34444456677776554                  688888  78888665554322211    00001111    1232


Q ss_pred             ---eEEEeeCCCeEEEEEeecCCCceEEE
Q psy11529        115 ---KFAAGSGARLISVCYFESENDWWVAK  140 (244)
Q Consensus       115 ---~l~~~~~d~~i~i~d~~~~~~~~~~~  140 (244)
                         .+++++.+|.+..+|.++++..|...
T Consensus       300 ~~~~V~~g~~~G~l~ald~~tG~~~W~~~  328 (488)
T cd00216         300 PVPAIVHAPKNGFFYVLDRTTGKLISARP  328 (488)
T ss_pred             eeEEEEEECCCceEEEEECCCCcEeeEeE
Confidence               57778889999999999998765543

The alignment model contains an 8-bladed beta-propeller.

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=97.62  E-value=0.01  Score=46.09  Aligned_cols=149  Identities=8%  Similarity=0.088  Sum_probs=78.7

Q ss_pred             CceEEEEEcCCCCeEEEec-----------CCC-eEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCc
Q psy11529         10 NPVTTHAWNNTRQQLAFTP-----------NNQ-EVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADR   77 (244)
Q Consensus        10 ~~v~~~~~~~~~~~l~~~~-----------~d~-~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~   77 (244)
                      .....|+|.++|+++++-.           ..+ .|.+++-.+..+.......+...-.....+++.+++ .++ +... 
T Consensus        14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~-   90 (367)
T TIGR02604        14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPP-   90 (367)
T ss_pred             CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCC-
Confidence            4556899999999887642           123 677776432112222333443334456889999988 444 4434 


Q ss_pred             cEEEE-eeeCCC-C----CceeeEE-Eec----cCcceEEEEECCCCCeEEEeeCC-------------------CeEEE
Q psy11529         78 NAYVW-TQNNDD-K----KWKPTLV-LLR----INRAATCVKWSPLENKFAAGSGA-------------------RLISV  127 (244)
Q Consensus        78 ~i~iw-d~~~~~-~----~~~~~~~-~~~----~~~~v~~~~~~~~~~~l~~~~~d-------------------~~i~i  127 (244)
                      .|..+ |  ... +    +...... +..    +......++|.|||.+.++-+..                   +.  +
T Consensus        91 ~i~~~~d--~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~--i  166 (367)
T TIGR02604        91 DILFLRD--KDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGG--L  166 (367)
T ss_pred             eEEEEeC--CCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCce--E
Confidence            34433 4  211 1    1111111 111    12347789999999876654421                   22  3


Q ss_pred             EEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEeeCC
Q psy11529        128 CYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTD  168 (244)
Q Consensus       128 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d  168 (244)
                      |.++....  .......+ -.....++|+|+|+++++-..+
T Consensus       167 ~r~~pdg~--~~e~~a~G-~rnp~Gl~~d~~G~l~~tdn~~  204 (367)
T TIGR02604       167 FRYNPDGG--KLRVVAHG-FQNPYGHSVDSWGDVFFCDNDD  204 (367)
T ss_pred             EEEecCCC--eEEEEecC-cCCCccceECCCCCEEEEccCC
Confidence            33333222  11222222 2456789999999887764433

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>KOG4441|consensus

Probab=97.59  E-value=0.0075  Score=49.46  Aligned_cols=189  Identities=15%  Similarity=0.148  Sum_probs=101.4

Q ss_pred             CCCeEEEecCC------CeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCC------ccEEEEeeeCC
Q psy11529         20 TRQQLAFTPNN------QEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSAD------RNAYVWTQNND   87 (244)
Q Consensus        20 ~~~~l~~~~~d------~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------~~i~iwd~~~~   87 (244)
                      .+.++++|+.+      ..+..||...  +.|.....+.. ...-.+++.. ++...++|+.|      .++..||  ..
T Consensus       284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~--~~w~~~a~m~~-~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD--~~  357 (571)
T KOG4441|consen  284 SGKLVAVGGYNRQGQSLRSVECYDPKT--NEWSSLAPMPS-PRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYD--PR  357 (571)
T ss_pred             CCeEEEECCCCCCCcccceeEEecCCc--CcEeecCCCCc-ccccccEEEE-CCEEEEEccccCCCcccceEEEec--CC
Confidence            45677888776      3677888877  55566655552 3333445444 35677788887      3566788  77


Q ss_pred             CCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCe-----EEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEE
Q psy11529         88 DKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARL-----ISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLL  162 (244)
Q Consensus        88 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~-----i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l  162 (244)
                      .+++.....+............  +|...++|+.||.     +-.||.++.+  |...............+.+  +|.+.
T Consensus       358 ~~~W~~~a~M~~~R~~~~v~~l--~g~iYavGG~dg~~~l~svE~YDp~~~~--W~~va~m~~~r~~~gv~~~--~g~iY  431 (571)
T KOG4441|consen  358 TNQWTPVAPMNTKRSDFGVAVL--DGKLYAVGGFDGEKSLNSVECYDPVTNK--WTPVAPMLTRRSGHGVAVL--GGKLY  431 (571)
T ss_pred             CCceeccCCccCccccceeEEE--CCEEEEEeccccccccccEEEecCCCCc--ccccCCCCcceeeeEEEEE--CCEEE
Confidence            7776554333322222222223  5778888888864     5556655543  2222211111112222222  57777


Q ss_pred             EEeeCCC------eEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCc---
Q psy11529        163 GCGSTDF------KVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGS---  233 (244)
Q Consensus       163 ~~~~~dg------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~---  233 (244)
                      ++|+.++      ++..||..+.                ....+..+...   ..... ++ .-++.+.+.||.|+.   
T Consensus       432 i~GG~~~~~~~l~sve~YDP~t~----------------~W~~~~~M~~~---R~~~g-~a-~~~~~iYvvGG~~~~~~~  490 (571)
T KOG4441|consen  432 IIGGGDGSSNCLNSVECYDPETN----------------TWTLIAPMNTR---RSGFG-VA-VLNGKIYVVGGFDGTSAL  490 (571)
T ss_pred             EEcCcCCCccccceEEEEcCCCC----------------ceeecCCcccc---cccce-EE-EECCEEEEECCccCCCcc
Confidence            8887654      4666776432                23333333322   22222 22 236777777777763   


Q ss_pred             --EEEEeCCC
Q psy11529        234 --INVRMSQQ  241 (244)
Q Consensus       234 --i~vwd~~~  241 (244)
                        |..||.++
T Consensus       491 ~~VE~ydp~~  500 (571)
T KOG4441|consen  491 SSVERYDPET  500 (571)
T ss_pred             ceEEEEcCCC
Confidence              66677654

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=97.58  E-value=0.00036  Score=36.06  Aligned_cols=30  Identities=30%  Similarity=0.698  Sum_probs=28.0

Q ss_pred             CCceeEEEecCCCCEEEEeeCCCeEEEEEe
Q psy11529        147 KSTITCLDWHPNNHLLGCGSTDFKVRVFSA  176 (244)
Q Consensus       147 ~~~v~~~~~~p~~~~l~~~~~dg~i~i~d~  176 (244)
                      ...|..++|+|...+||.++.+|.|.+|.+
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl   40 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL   40 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEEC
Confidence            467999999999999999999999999987

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=97.56  E-value=0.029  Score=45.38  Aligned_cols=112  Identities=12%  Similarity=0.065  Sum_probs=61.2

Q ss_pred             CeEEEecCCCeEEEeeeccCCCcceeeeeeccCCC------ce--EEEEeCCCCCeEEEEeCCccEEEEeeeCCCCCcee
Q psy11529         22 QQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDL------KV--TGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKWKP   93 (244)
Q Consensus        22 ~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~------~v--~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~   93 (244)
                      ..+++++.++.|.-.|..+  +  +.+..+.....      .+  ..+... ++..++.++.++.|.-+|  .++++..-
T Consensus        62 g~vy~~~~~g~l~AlD~~t--G--~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD--~~TG~~~W  134 (488)
T cd00216          62 GDMYFTTSHSALFALDAAT--G--KVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALD--AETGKQVW  134 (488)
T ss_pred             CEEEEeCCCCcEEEEECCC--C--hhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEE--CCCCCEee
Confidence            4556666788898888876  4  33333322111      00  011111 225777788899999999  88888655


Q ss_pred             eEEEeccCcceEEEEECC--CCCeEEEee---------CCCeEEEEEeecCCCceEEE
Q psy11529         94 TLVLLRINRAATCVKWSP--LENKFAAGS---------GARLISVCYFESENDWWVAK  140 (244)
Q Consensus        94 ~~~~~~~~~~v~~~~~~~--~~~~l~~~~---------~d~~i~i~d~~~~~~~~~~~  140 (244)
                      ..........-..+.-+|  .+..++.++         .++.+..+|..+++..|...
T Consensus       135 ~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~  192 (488)
T cd00216         135 KFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFY  192 (488)
T ss_pred             eecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEee
Confidence            544322210001111122  124455543         35788888988888766543

The alignment model contains an 8-bladed beta-propeller.

>PHA03098 kelch-like protein; Provisional

Probab=97.54  E-value=0.018  Score=47.20  Aligned_cols=106  Identities=13%  Similarity=0.166  Sum_probs=53.4

Q ss_pred             CCCeEEEecCCC------eEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCC-----ccEEEEeeeCCC
Q psy11529         20 TRQQLAFTPNNQ------EVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSAD-----RNAYVWTQNNDD   88 (244)
Q Consensus        20 ~~~~l~~~~~d~------~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~   88 (244)
                      ++..++.|+.++      .+..||..+  +.|.....+.........+.+  +++.++.|+.+     ..+..||  ..+
T Consensus       294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~--~~W~~~~~~~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd--~~~  367 (534)
T PHA03098        294 NNVIYFIGGMNKNNLSVNSVVSYDTKT--KSWNKVPELIYPRKNPGVTVF--NNRIYVIGGIYNSISLNTVESWK--PGE  367 (534)
T ss_pred             CCEEEEECCCcCCCCeeccEEEEeCCC--CeeeECCCCCcccccceEEEE--CCEEEEEeCCCCCEecceEEEEc--CCC
Confidence            455667776532      567777766  555444333322222222222  46677777754     3467788  667


Q ss_pred             CCceeeEEEeccCcceEEEEECCCCCeEEEeeCC------CeEEEEEeecC
Q psy11529         89 KKWKPTLVLLRINRAATCVKWSPLENKFAAGSGA------RLISVCYFESE  133 (244)
Q Consensus        89 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------~~i~i~d~~~~  133 (244)
                      +++.....+....... +++. -+++.++.|+.+      ..+..||..+.
T Consensus       368 ~~W~~~~~lp~~r~~~-~~~~-~~~~iYv~GG~~~~~~~~~~v~~yd~~t~  416 (534)
T PHA03098        368 SKWREEPPLIFPRYNP-CVVN-VNNLIYVIGGISKNDELLKTVECFSLNTN  416 (534)
T ss_pred             CceeeCCCcCcCCccc-eEEE-ECCEEEEECCcCCCCcccceEEEEeCCCC
Confidence            6654332222111111 2222 245666666632      35677776654

>KOG2079|consensus

Probab=97.53  E-value=0.00073  Score=57.08  Aligned_cols=105  Identities=14%  Similarity=0.100  Sum_probs=73.0

Q ss_pred             CCCeEEEEeCCccEEEEeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecC
Q psy11529         66 NTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKP  145 (244)
Q Consensus        66 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~  145 (244)
                      .+..++.|+..|.+-..|  .. +...+...-....++|.+++|+.+|+.++.|-.+|.|.+||+..++..........+
T Consensus        98 ~~~~ivi~Ts~ghvl~~d--~~-~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap  174 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSD--MT-GNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAP  174 (1206)
T ss_pred             eeeeEEEEcCchhhhhhh--hh-cccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCc
Confidence            355688888899999988  33 333333333455789999999999999999999999999999998762222222222


Q ss_pred             CCCceeEEEecCCCCEEEEeeCCCeEEEEEe
Q psy11529        146 IKSTITCLDWHPNNHLLGCGSTDFKVRVFSA  176 (244)
Q Consensus       146 ~~~~v~~~~~~p~~~~l~~~~~dg~i~i~d~  176 (244)
                      + ..+..+.+..++..++++...|.  +|.+
T Consensus       175 ~-t~vi~v~~t~~nS~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  175 V-TGVIFVGRTSQNSKLLTSDTGGS--FWKL  202 (1206)
T ss_pred             c-ceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence            2 33444555556667788777775  6665

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=97.47  E-value=0.031  Score=43.47  Aligned_cols=156  Identities=14%  Similarity=0.132  Sum_probs=72.7

Q ss_pred             EEEcCCCCeEEEec------CCCeEEEeeeccCCCcceeeeeeccC---CCceEEEEeCCCCCeEEEEe-----------
Q psy11529         15 HAWNNTRQQLAFTP------NNQEVHLYQYEKAANDWSQLDVLDGH---DLKVTGIDWAPNTNRIVTCS-----------   74 (244)
Q Consensus        15 ~~~~~~~~~l~~~~------~d~~v~v~~~~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~-----------   74 (244)
                      +..-|+|+.++++-      .-|-+.++|-++    +.........   ..--..+-|.|..+.++|..           
T Consensus       135 ~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~t----f~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf  210 (461)
T PF05694_consen  135 VHCLPDGRIMISALGDADGNGPGGFVLLDGET----FEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGF  210 (461)
T ss_dssp             EEE-SS--EEEEEEEETTS-S--EEEEE-TTT------EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT--
T ss_pred             eeecCCccEEEEeccCCCCCCCCcEEEEcCcc----ccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCC
Confidence            44457787777651      124455665543    2344444322   22334566778777777664           


Q ss_pred             ---------CCccEEEEeeeCCCCCceeeEEEeccCcceEEEEECC--CCCe-EEEeeCCCeEEEEEeecCCCceEEEee
Q psy11529         75 ---------ADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSP--LENK-FAAGSGARLISVCYFESENDWWVAKHI  142 (244)
Q Consensus        75 ---------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~  142 (244)
                               ...++.+||  +.+.+.++.+.+.........+.|..  +..+ ++.+.-...|..|--..... |.....
T Consensus       211 ~~~d~~~~~yG~~l~vWD--~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~-W~a~kV  287 (461)
T PF05694_consen  211 NPEDLEAGKYGHSLHVWD--WSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGE-WAAEKV  287 (461)
T ss_dssp             -TTTHHHH-S--EEEEEE--TTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTE-EEEEEE
T ss_pred             ChhHhhcccccCeEEEEE--CCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCC-eeeeEE
Confidence                     236799999  88888777776544334566777754  4444 33333444554443322222 322221


Q ss_pred             ec-C-----------C-------CCceeEEEecCCCCEEEEee-CCCeEEEEEee
Q psy11529        143 KK-P-----------I-------KSTITCLDWHPNNHLLGCGS-TDFKVRVFSAY  177 (244)
Q Consensus       143 ~~-~-----------~-------~~~v~~~~~~p~~~~l~~~~-~dg~i~i~d~~  177 (244)
                      .. +           .       ..-++.+..|.|.++|..++ ..|.|+.||+.
T Consensus       288 i~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDIS  342 (461)
T PF05694_consen  288 IDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDIS  342 (461)
T ss_dssp             EEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-S
T ss_pred             EECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecC
Confidence            11 1           0       24578999999999887766 58999999994

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PHA02790 Kelch-like protein; Provisional

Probab=97.47  E-value=0.026  Score=45.57  Aligned_cols=186  Identities=11%  Similarity=0.092  Sum_probs=89.6

Q ss_pred             CCCeEEEecCCC-----eEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCC--ccEEEEeeeCCCCCce
Q psy11529         20 TRQQLAFTPNNQ-----EVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSAD--RNAYVWTQNNDDKKWK   92 (244)
Q Consensus        20 ~~~~l~~~~~d~-----~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--~~i~iwd~~~~~~~~~   92 (244)
                      ++..+++|+.++     .+..||...  +.|..+..+.........+.  -++...+.|+.+  ..+..||  ..++++.
T Consensus       271 ~~~lyviGG~~~~~~~~~v~~Ydp~~--~~W~~~~~m~~~r~~~~~v~--~~~~iYviGG~~~~~sve~yd--p~~n~W~  344 (480)
T PHA02790        271 GEVVYLIGGWMNNEIHNNAIAVNYIS--NNWIPIPPMNSPRLYASGVP--ANNKLYVVGGLPNPTSVERWF--HGDAAWV  344 (480)
T ss_pred             CCEEEEEcCCCCCCcCCeEEEEECCC--CEEEECCCCCchhhcceEEE--ECCEEEEECCcCCCCceEEEE--CCCCeEE
Confidence            445667776542     466777766  54555544432222222222  356666777653  3577788  6666554


Q ss_pred             eeEEEeccCcceEEEEECCCCCeEEEeeCCC---eEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEeeCCC
Q psy11529         93 PTLVLLRINRAATCVKWSPLENKFAAGSGAR---LISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDF  169 (244)
Q Consensus        93 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~---~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg  169 (244)
                      ....+.........+..  +++..+.|+.++   .+..||.++.+  |...............+  .-++++.+.|   |
T Consensus       345 ~~~~l~~~r~~~~~~~~--~g~IYviGG~~~~~~~ve~ydp~~~~--W~~~~~m~~~r~~~~~~--~~~~~IYv~G---G  415 (480)
T PHA02790        345 NMPSLLKPRCNPAVASI--NNVIYVIGGHSETDTTTEYLLPNHDQ--WQFGPSTYYPHYKSCAL--VFGRRLFLVG---R  415 (480)
T ss_pred             ECCCCCCCCcccEEEEE--CCEEEEecCcCCCCccEEEEeCCCCE--EEeCCCCCCccccceEE--EECCEEEEEC---C
Confidence            33322211222222222  566677776543   46677765442  33221111111111122  2246666666   3


Q ss_pred             eEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCC-----CcEEEEeCCC
Q psy11529        170 KVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHD-----GSINVRMSQQ  241 (244)
Q Consensus       170 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~vwd~~~  241 (244)
                      .+.+||..+                .....+..+...   ......+.  -+|++.+.||.+     .++..||.++
T Consensus       416 ~~e~ydp~~----------------~~W~~~~~m~~~---r~~~~~~v--~~~~IYviGG~~~~~~~~~ve~Yd~~~  471 (480)
T PHA02790        416 NAEFYCESS----------------NTWTLIDDPIYP---RDNPELII--VDNKLLLIGGFYRGSYIDTIEVYNNRT  471 (480)
T ss_pred             ceEEecCCC----------------CcEeEcCCCCCC---ccccEEEE--ECCEEEEECCcCCCcccceEEEEECCC
Confidence            466777632                123333323221   22222222  377878888754     3577888765

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.44  E-value=0.026  Score=41.85  Aligned_cols=147  Identities=16%  Similarity=0.075  Sum_probs=87.0

Q ss_pred             CCCeEEEEeCCccEEEEeeeCC-CCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEE----
Q psy11529         66 NTNRIVTCSADRNAYVWTQNND-DKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAK----  140 (244)
Q Consensus        66 ~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~----  140 (244)
                      .++.|+.|+.+| +.+++  .. .......    .....|..+...|+-+.|++-+ |+.+.+++++.-.......    
T Consensus         6 ~~~~L~vGt~~G-l~~~~--~~~~~~~~~i----~~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~   77 (275)
T PF00780_consen    6 WGDRLLVGTEDG-LYVYD--LSDPSKPTRI----LKLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAF   77 (275)
T ss_pred             CCCEEEEEECCC-EEEEE--ecCCccceeE----eecceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccc
Confidence            577899998888 89999  42 2221111    1233499999999877766665 4999999987765421110    


Q ss_pred             ------eeecCCCCceeEEE--ecCCC-CEEEEeeCCCeEEEEEeeecccccCCCCCCCCcccccc-ceeEEecCCCCCC
Q psy11529        141 ------HIKKPIKSTITCLD--WHPNN-HLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLG-NCLVELNNSSSGG  210 (244)
Q Consensus       141 ------~~~~~~~~~v~~~~--~~p~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  210 (244)
                            ....+....+..++  -.+.+ ..|+++ ...+|.+|......              ... +...++..    .
T Consensus        78 ~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va-~kk~i~i~~~~~~~--------------~~f~~~~ke~~l----p  138 (275)
T PF00780_consen   78 PKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVA-VKKKILIYEWNDPR--------------NSFSKLLKEISL----P  138 (275)
T ss_pred             cccccccccccccCCeeEEeeccccccceEEEEE-ECCEEEEEEEECCc--------------ccccceeEEEEc----C
Confidence                  00112223444444  11233 344444 45589999885321              112 45566665    5


Q ss_pred             CCeEEEEEecCCCEEEEeeCCCcEEEEeCCCC
Q psy11529        211 GWIHSVAFSKDGNKLCWTSHDGSINVRMSQQV  242 (244)
Q Consensus       211 ~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~  242 (244)
                      ..+..++|.  ++.|+.|..+ ...+.|+++.
T Consensus       139 ~~~~~i~~~--~~~i~v~~~~-~f~~idl~~~  167 (275)
T PF00780_consen  139 DPPSSIAFL--GNKICVGTSK-GFYLIDLNTG  167 (275)
T ss_pred             CCcEEEEEe--CCEEEEEeCC-ceEEEecCCC
Confidence            778999998  5567767644 4667777643

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=97.41  E-value=0.032  Score=45.84  Aligned_cols=122  Identities=12%  Similarity=0.077  Sum_probs=74.7

Q ss_pred             CcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEec--CCCCEEEEeeCCCeEEEEEeee
Q psy11529        101 NRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWH--PNNHLLGCGSTDFKVRVFSAYI  178 (244)
Q Consensus       101 ~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--p~~~~l~~~~~dg~i~i~d~~~  178 (244)
                      ...+.-+.-+.-++.-++-+....+.|||.+....  .....+ ...+.|.+++|.  |+|+.+++.+....|.+|.-..
T Consensus        29 i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~l--E~~~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R  105 (631)
T PF12234_consen   29 ISNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVL--EYEESF-SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLR  105 (631)
T ss_pred             CCCcceEeecccCcEEEEECCCCEEEEEEcCCcEE--EEeeee-cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccc
Confidence            33444555555555544545566899999988763  222222 446889999997  5888888888889999987522


Q ss_pred             cccccCCCCCCCCccccccceeEEe--cCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEe
Q psy11529        179 KDIESAPQSTNWGSKSTLGNCLVEL--NNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRM  238 (244)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd  238 (244)
                      .+...  ..       +....+..+  ..+.  ..+|.+..|.++|.+++.+  ++.+.|+|
T Consensus       106 ~dy~~--~~-------p~w~~i~~i~i~~~T--~h~Igds~Wl~~G~LvV~s--GNqlfv~d  154 (631)
T PF12234_consen  106 YDYTN--KG-------PSWAPIRKIDISSHT--PHPIGDSIWLKDGTLVVGS--GNQLFVFD  154 (631)
T ss_pred             hhhhc--CC-------cccceeEEEEeecCC--CCCccceeEecCCeEEEEe--CCEEEEEC
Confidence            11110  00       122233332  2332  4679999999999877655  34677765

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.40  E-value=0.043  Score=43.39  Aligned_cols=113  Identities=13%  Similarity=0.116  Sum_probs=65.7

Q ss_pred             eEEEEeCCCCCeEEEE-eC----CccEEEEeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCC---------
Q psy11529         58 VTGIDWAPNTNRIVTC-SA----DRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGAR---------  123 (244)
Q Consensus        58 v~~~~~~~~~~~l~~~-~~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~---------  123 (244)
                      +....++|+|+++|.+ +.    ...++++|  +.+++..... +.  ......+.|.++++.|+....+.         
T Consensus       126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~D--l~tg~~l~d~-i~--~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~  200 (414)
T PF02897_consen  126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFD--LETGKFLPDG-IE--NPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGY  200 (414)
T ss_dssp             EEEEEETTTSSEEEEEEEETTSSEEEEEEEE--TTTTEEEEEE-EE--EEESEEEEECTTSSEEEEEECSTTTSS-CCGC
T ss_pred             eeeeeECCCCCEEEEEecCCCCceEEEEEEE--CCCCcCcCCc-cc--ccccceEEEeCCCCEEEEEEeCcccccccCCC
Confidence            3467899999998855 22    24599999  7888643322 11  12223499999988877665332         


Q ss_pred             --eEEEEEeecCCCceEEEeeecCCC-Cc-eeEEEecCCCCEEEEeeCC----CeEEEEEee
Q psy11529        124 --LISVCYFESENDWWVAKHIKKPIK-ST-ITCLDWHPNNHLLGCGSTD----FKVRVFSAY  177 (244)
Q Consensus       124 --~i~i~d~~~~~~~~~~~~~~~~~~-~~-v~~~~~~p~~~~l~~~~~d----g~i~i~d~~  177 (244)
                        .|+.|.+.+...  .....+.... .. ...+..++|+++|+.....    ..+.+.|+.
T Consensus       201 ~~~v~~~~~gt~~~--~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~  260 (414)
T PF02897_consen  201 PRQVYRHKLGTPQS--EDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLD  260 (414)
T ss_dssp             CEEEEEEETTS-GG--G-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECC
T ss_pred             CcEEEEEECCCChH--hCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEecc
Confidence              255555554433  2122222222 22 6688899999987754432    357777764

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>KOG1916|consensus

Probab=97.30  E-value=0.00024  Score=58.85  Aligned_cols=124  Identities=14%  Similarity=0.202  Sum_probs=79.5

Q ss_pred             eeccCCCceEEEEeCC-CCCeEEEEeCCccEEEEeeeCCCCCceeeEEEec---cCcceEEEEECC---CCCeEEEeeCC
Q psy11529         50 VLDGHDLKVTGIDWAP-NTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLR---INRAATCVKWSP---LENKFAAGSGA  122 (244)
Q Consensus        50 ~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~---~~~~v~~~~~~~---~~~~l~~~~~d  122 (244)
                      .+++..+.|..+.|.. +...+.  -.-|.+.+||+++-.|+..+.+....   ....+.-+.|.|   +..++.++..+
T Consensus       127 l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~  204 (1283)
T KOG1916|consen  127 LAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKG  204 (1283)
T ss_pred             HHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCC
Confidence            3566677788888854 222222  23467899997766776655544322   223344555554   55667777778


Q ss_pred             CeEEEEEeecCCCceEEEeeecCCCCceeEE-----------EecCCCCEEEEeeCCCeEEEEEeeecc
Q psy11529        123 RLISVCYFESENDWWVAKHIKKPIKSTITCL-----------DWHPNNHLLGCGSTDFKVRVFSAYIKD  180 (244)
Q Consensus       123 ~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~-----------~~~p~~~~l~~~~~dg~i~i~d~~~~~  180 (244)
                      +.+++..++....     ..+..|..++..+           ..+|||+.+++++.||.++.|.++...
T Consensus       205 ~~i~lL~~~ra~~-----~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g  268 (1283)
T KOG1916|consen  205 GEIRLLNINRALR-----SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITG  268 (1283)
T ss_pred             CceeEeeechHHH-----HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeec
Confidence            9999888776543     2233354444433           368999999999999999999986433

>PHA02713 hypothetical protein; Provisional

Probab=97.29  E-value=0.0077  Score=49.37  Aligned_cols=147  Identities=10%  Similarity=0.076  Sum_probs=77.6

Q ss_pred             CCCeEEEecCCC-----eEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCC------------------
Q psy11529         20 TRQQLAFTPNNQ-----EVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSAD------------------   76 (244)
Q Consensus        20 ~~~~l~~~~~d~-----~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------------------   76 (244)
                      +|+..+.||.++     .+..||..+  +.|..+..+.........+..  +++..+.|+.+                  
T Consensus       351 ~g~IYviGG~~~~~~~~sve~Ydp~~--~~W~~~~~mp~~r~~~~~~~~--~g~IYviGG~~~~~~~~~~~~~~~~~~~~  426 (557)
T PHA02713        351 DDTIYAIGGQNGTNVERTIECYTMGD--DKWKMLPDMPIALSSYGMCVL--DQYIYIIGGRTEHIDYTSVHHMNSIDMEE  426 (557)
T ss_pred             CCEEEEECCcCCCCCCceEEEEECCC--CeEEECCCCCcccccccEEEE--CCEEEEEeCCCcccccccccccccccccc
Confidence            566777777653     477888877  556655544422222222222  46777777654                  


Q ss_pred             -----ccEEEEeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCC------CeEEEEEeecCCCceEEEeeecC
Q psy11529         77 -----RNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGA------RLISVCYFESENDWWVAKHIKKP  145 (244)
Q Consensus        77 -----~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------~~i~i~d~~~~~~~~~~~~~~~~  145 (244)
                           ..+..||  ..+.++.....+.........+.+  +++..+.|+.+      ..+..||.++... |........
T Consensus       427 ~~~~~~~ve~YD--P~td~W~~v~~m~~~r~~~~~~~~--~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~-W~~~~~m~~  501 (557)
T PHA02713        427 DTHSSNKVIRYD--TVNNIWETLPNFWTGTIRPGVVSH--KDDIYVVCDIKDEKNVKTCIFRYNTNTYNG-WELITTTES  501 (557)
T ss_pred             cccccceEEEEC--CCCCeEeecCCCCcccccCcEEEE--CCEEEEEeCCCCCCccceeEEEecCCCCCC-eeEccccCc
Confidence                 2477788  777766433322111122222222  45666666643      2356777776222 333332222


Q ss_pred             CCCceeEEEecCCCCEEEEeeCCC--eEEEEEee
Q psy11529        146 IKSTITCLDWHPNNHLLGCGSTDF--KVRVFSAY  177 (244)
Q Consensus       146 ~~~~v~~~~~~p~~~~l~~~~~dg--~i~i~d~~  177 (244)
                      .......+.+  ++++.++|+.+|  .+..||..
T Consensus       502 ~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~  533 (557)
T PHA02713        502 RLSALHTILH--DNTIMMLHCYESYMLQDTFNVY  533 (557)
T ss_pred             ccccceeEEE--CCEEEEEeeecceeehhhcCcc
Confidence            2222222333  678888998888  66677763

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=97.29  E-value=0.056  Score=45.00  Aligned_cols=153  Identities=15%  Similarity=0.158  Sum_probs=95.1

Q ss_pred             CCeEEEecCCCeEEEeeeccCCCcce--eeeee----------c------cCCCceEEEEeCC--CCCeEEEEeCCccEE
Q psy11529         21 RQQLAFTPNNQEVHLYQYEKAANDWS--QLDVL----------D------GHDLKVTGIDWAP--NTNRIVTCSADRNAY   80 (244)
Q Consensus        21 ~~~l~~~~~d~~v~v~~~~~~~~~~~--~~~~~----------~------~~~~~v~~~~~~~--~~~~l~~~~~d~~i~   80 (244)
                      ..++++|. .+.|.||+.+.......  ....+          .      .....|+.+....  ....|+.|.+||.|.
T Consensus        49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~  127 (717)
T PF08728_consen   49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVL  127 (717)
T ss_pred             CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEE
Confidence            56666664 68999999865211000  00011          0      0123466665544  456788999999999


Q ss_pred             EEeee--------C----CC----CCceeeEEEeccCcceEEEEEC--CCCCeEEEeeCCCeEEEEEeecCCCceEEEee
Q psy11529         81 VWTQN--------N----DD----KKWKPTLVLLRINRAATCVKWS--PLENKFAAGSGARLISVCYFESENDWWVAKHI  142 (244)
Q Consensus        81 iwd~~--------~----~~----~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~  142 (244)
                      +|...        .    ..    ....+.+. ......+++++++  ...++||+++....|.||-+....... ....
T Consensus       128 ~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~-~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~-~~~~  205 (717)
T PF08728_consen  128 AYYTETIIEAIERFSEDNDSGFSRLKIKPFFH-LRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERF-YHVP  205 (717)
T ss_pred             EEEHHHHHHHHHhhccccccccccccCCCCeE-eecCCceeEEEEEecCcceEEEEecCCceEEEEEEecccccc-cccc
Confidence            99631        0    00    00112222 2345688999998  788899999999999998877642211 1111


Q ss_pred             ecCCCCceeEEEecCCC---C---EEEEeeCCCeEEEEEe
Q psy11529        143 KKPIKSTITCLDWHPNN---H---LLGCGSTDFKVRVFSA  176 (244)
Q Consensus       143 ~~~~~~~v~~~~~~p~~---~---~l~~~~~dg~i~i~d~  176 (244)
                      ...+...|.+|+|-++.   .   .+++++-.|.+.+|++
T Consensus       206 s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  206 SHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             ccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            22356789999998743   2   6777888999999888

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.29  E-value=0.038  Score=40.36  Aligned_cols=164  Identities=12%  Similarity=0.014  Sum_probs=89.9

Q ss_pred             CceEEEEeCCC-CCeEEEEeCCcc-EEEEeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeC-----CCeEEEE
Q psy11529         56 LKVTGIDWAPN-TNRIVTCSADRN-AYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSG-----ARLISVC  128 (244)
Q Consensus        56 ~~v~~~~~~~~-~~~l~~~~~d~~-i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----d~~i~i~  128 (244)
                      .....++|+|. ..-++.+-.-|+ ..++|  ..+.+............-.-.-.|||||.+|+..-.     .|.|-||
T Consensus        68 aR~Hgi~~~p~~~ravafARrPGtf~~vfD--~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvY  145 (366)
T COG3490          68 ARGHGIAFHPALPRAVAFARRPGTFAMVFD--PNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVY  145 (366)
T ss_pred             cccCCeecCCCCcceEEEEecCCceEEEEC--CCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEE
Confidence            33446888884 344555544443 56788  666654444332222223335679999999887654     3679999


Q ss_pred             EeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEeeCCCeEEEE-Eeeeccccc-CCCCCCCCccccccceeEE--ec
Q psy11529        129 YFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVF-SAYIKDIES-APQSTNWGSKSTLGNCLVE--LN  204 (244)
Q Consensus       129 d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~i~i~-d~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~  204 (244)
                      |.+..-.   ..-....|.-....+.|.+||+.++.+.  |-|..- |....++.- ...+...-....+++++..  +.
T Consensus       146 d~r~~fq---rvgE~~t~GiGpHev~lm~DGrtlvvan--GGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp  220 (366)
T COG3490         146 DAREGFQ---RVGEFSTHGIGPHEVTLMADGRTLVVAN--GGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLP  220 (366)
T ss_pred             ecccccc---eecccccCCcCcceeEEecCCcEEEEeC--CceecccccCccccchhhcCccEEEEeccccchhhhccCc
Confidence            9985532   3344455656677899999999988764  434443 221100000 0000000000023333322  22


Q ss_pred             --CCCCCCCCeEEEEEecCCCEEEEee
Q psy11529        205 --NSSSGGGWIHSVAFSKDGNKLCWTS  229 (244)
Q Consensus       205 --~~~~~~~~v~~~~~s~~~~~l~~~~  229 (244)
                        .+   ...++.++..+||+.++.+-
T Consensus       221 ~~l~---~lSiRHld~g~dgtvwfgcQ  244 (366)
T COG3490         221 ASLR---QLSIRHLDIGRDGTVWFGCQ  244 (366)
T ss_pred             hhhh---hcceeeeeeCCCCcEEEEEE
Confidence              22   55688888888888766553

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=97.22  E-value=0.062  Score=44.26  Aligned_cols=117  Identities=11%  Similarity=0.098  Sum_probs=71.5

Q ss_pred             CceEEEEeCCCCCeEEEEeCCccEEEEeeeCCCCCceeeEEEeccCcceEEEEEC--CCCCeEEEeeCCCeEEEEEe---
Q psy11529         56 LKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWS--PLENKFAAGSGARLISVCYF---  130 (244)
Q Consensus        56 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~d~~i~i~d~---  130 (244)
                      ....-+.-+.-++.-+.-+...++.|||  ...+.......+ .....|..+.|.  |+++.+++.+-.+.|.+|--   
T Consensus        30 ~~~~li~gss~~k~a~V~~~~~~LtIWD--~~~~~lE~~~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~  106 (631)
T PF12234_consen   30 SNPSLISGSSIKKIAVVDSSRSELTIWD--TRSGVLEYEESF-SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRY  106 (631)
T ss_pred             CCcceEeecccCcEEEEECCCCEEEEEE--cCCcEEEEeeee-cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccch
Confidence            3444454555444444444456899999  666664444433 457889999995  67888888888888888753   


Q ss_pred             --ecCCCceEEEe--eecCC-CCceeEEEecCCCCEEEEeeCCCeEEEEEee
Q psy11529        131 --ESENDWWVAKH--IKKPI-KSTITCLDWHPNNHLLGCGSTDFKVRVFSAY  177 (244)
Q Consensus       131 --~~~~~~~~~~~--~~~~~-~~~v~~~~~~p~~~~l~~~~~dg~i~i~d~~  177 (244)
                        -...+.+....  ....+ ..+|.+..|.++|.+++.+  ...+.|+|-.
T Consensus       107 dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk~  156 (631)
T PF12234_consen  107 DYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFDKW  156 (631)
T ss_pred             hhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEe--CCEEEEECCC
Confidence              12222121111  11222 2578999999999666544  3568888753

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PRK13684 Ycf48-like protein; Provisional

Probab=97.20  E-value=0.062  Score=41.16  Aligned_cols=157  Identities=13%  Similarity=0.154  Sum_probs=84.9

Q ss_pred             CCceEEEEeCCCCCeEEEEeCCccEEE-EeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecC
Q psy11529         55 DLKVTGIDWAPNTNRIVTCSADRNAYV-WTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESE  133 (244)
Q Consensus        55 ~~~v~~~~~~~~~~~l~~~~~d~~i~i-wd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~  133 (244)
                      ...+..+.+.|++.+++++. .|.+.. +|  .....+...  .......++.+.+.++++.++++ ..|.+.+=.-+.+
T Consensus       172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~s~~--~gg~tW~~~--~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G  245 (334)
T PRK13684        172 AGVVRNLRRSPDGKYVAVSS-RGNFYSTWE--PGQTAWTPH--QRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDL  245 (334)
T ss_pred             cceEEEEEECCCCeEEEEeC-CceEEEEcC--CCCCeEEEe--eCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCC
Confidence            45788999999887766554 554432 23  111223222  23345678999999998877665 4566543122333


Q ss_pred             CCceEEEeee-cCCCCceeEEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCC
Q psy11529        134 NDWWVAKHIK-KPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGW  212 (244)
Q Consensus       134 ~~~~~~~~~~-~~~~~~v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (244)
                      .. |...... ......+.++.+.|++..++++ .+|.+.. ..                  ..++.-............
T Consensus       246 ~s-W~~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~~-S~------------------d~G~tW~~~~~~~~~~~~  304 (334)
T PRK13684        246 ES-WSKPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLLV-SK------------------DGGKTWEKDPVGEEVPSN  304 (334)
T ss_pred             Cc-cccccCCccccccceeeEEEcCCCCEEEEc-CCCeEEE-eC------------------CCCCCCeECCcCCCCCcc
Confidence            22 2211111 1122457889999988766554 5675543 22                  112222222110000335


Q ss_pred             eEEEEEecCCCEEEEeeCCCcEEEEeC
Q psy11529        213 IHSVAFSKDGNKLCWTSHDGSINVRMS  239 (244)
Q Consensus       213 v~~~~~s~~~~~l~~~~~dg~i~vwd~  239 (244)
                      ...+.|..+++.+++| ..|.|.-|+-
T Consensus       305 ~~~~~~~~~~~~~~~G-~~G~il~~~~  330 (334)
T PRK13684        305 FYKIVFLDPEKGFVLG-QRGVLLRYVG  330 (334)
T ss_pred             eEEEEEeCCCceEEEC-CCceEEEecC
Confidence            7788887777666544 6788877753

>KOG2377|consensus

Probab=97.17  E-value=0.02  Score=44.55  Aligned_cols=142  Identities=8%  Similarity=0.065  Sum_probs=87.9

Q ss_pred             EEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCCCCCceee
Q psy11529         15 HAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKWKPT   94 (244)
Q Consensus        15 ~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~   94 (244)
                      +-|...++.| .+...|.+.=|-..+++.+ -++..-...+++|.++.||+|.+.+|.--.+++|.+++  ....+....
T Consensus        28 vFfDDaNkql-favrSggatgvvvkgpndD-VpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~n--f~~d~~~l~  103 (657)
T KOG2377|consen   28 VFFDDANKQL-FAVRSGGATGVVVKGPNDD-VPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCN--FIPDNSQLE  103 (657)
T ss_pred             eeeccCcceE-EEEecCCeeEEEEeCCCCC-CCceeeecCCCceeEEEeccCcceEEEEecCceEEEEe--cCCCchhhH
Confidence            3343333333 3334566777777664331 12222233567999999999999999998999999999  433322111


Q ss_pred             --EEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEe
Q psy11529         95 --LVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCG  165 (244)
Q Consensus        95 --~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~  165 (244)
                        .........|....|+.. .-+|.....| +.+|-......   .....+.++..|.-..|+++.+.++.+
T Consensus       104 ~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pekr---slRlVks~~~nvnWy~yc~et~v~LL~  171 (657)
T KOG2377|consen  104 YTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPEKR---SLRLVKSHNLNVNWYMYCPETAVILLS  171 (657)
T ss_pred             HHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchhhh---hhhhhhhcccCccEEEEccccceEeee
Confidence              222223455888889866 5566666555 66766665543   234445667788889999988754433

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=97.16  E-value=0.079  Score=41.54  Aligned_cols=92  Identities=15%  Similarity=0.136  Sum_probs=55.4

Q ss_pred             EEEEcCCCCeEEEecCCCeEEE---eeeccC---CCcceee--eeeccC-CCceEEEEeC-----------CCCCeEEEE
Q psy11529         14 THAWNNTRQQLAFTPNNQEVHL---YQYEKA---ANDWSQL--DVLDGH-DLKVTGIDWA-----------PNTNRIVTC   73 (244)
Q Consensus        14 ~~~~~~~~~~l~~~~~d~~v~v---~~~~~~---~~~~~~~--~~~~~~-~~~v~~~~~~-----------~~~~~l~~~   73 (244)
                      .++.+|+++.||.+..+..+.+   |+....   .+.+...  ..+... .+.|+++.|-           +|...++.|
T Consensus         6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG   85 (415)
T PF14655_consen    6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG   85 (415)
T ss_pred             eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence            5688999999999977666555   533210   0111111  112211 1567777663           345688999


Q ss_pred             eCCccEEEEeeeCCCCCceeeEEEeccCcceEEEEEC
Q psy11529         74 SADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWS  110 (244)
Q Consensus        74 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~  110 (244)
                      ..+|.|++|.   ++|.......  -|..+|..+...
T Consensus        86 ~ssG~vrfyt---e~G~LL~~Q~--~h~~pV~~ik~~  117 (415)
T PF14655_consen   86 TSSGYVRFYT---ENGVLLLSQL--LHEEPVLKIKCR  117 (415)
T ss_pred             ecccEEEEEe---ccchHHHHHh--cCccceEEEEec
Confidence            9999999999   4665433322  256777776664

>KOG2444|consensus

Probab=97.09  E-value=0.003  Score=44.18  Aligned_cols=105  Identities=11%  Similarity=0.067  Sum_probs=60.9

Q ss_pred             CCeEEEEeCCccEEEEeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCC
Q psy11529         67 TNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPI  146 (244)
Q Consensus        67 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~  146 (244)
                      +..++.|+.+|.|.+|..+.....  ..............+.--.++.+..++..++.|+.|++...+.    .-....|
T Consensus        70 ~~~~~vG~~dg~v~~~n~n~~g~~--~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~----~g~~g~h  143 (238)
T KOG2444|consen   70 SAKLMVGTSDGAVYVFNWNLEGAH--SDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKV----LGYVGQH  143 (238)
T ss_pred             CceEEeecccceEEEecCCccchH--HHhhhcccccceeccccccccceeEEeccCCceeeeccccCce----eeeeccc
Confidence            456788899999999993211111  1111111122222222333456788899999999999887764    2223333


Q ss_pred             C-CceeEEEecCCCCEEEEe--eCCCeEEEEEee
Q psy11529        147 K-STITCLDWHPNNHLLGCG--STDFKVRVFSAY  177 (244)
Q Consensus       147 ~-~~v~~~~~~p~~~~l~~~--~~dg~i~i~d~~  177 (244)
                      . .+......+..++.++.+  +.|..++.|++.
T Consensus       144 ~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve  177 (238)
T KOG2444|consen  144 NFESGEELIVVGSDEFLKIADTSHDRVLKKWNVE  177 (238)
T ss_pred             cCCCcceeEEecCCceEEeeccccchhhhhcchh
Confidence            3 344444455555566666  667777777763

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=96.94  E-value=0.083  Score=42.59  Aligned_cols=117  Identities=14%  Similarity=0.208  Sum_probs=69.1

Q ss_pred             CceEEEEEcCCC-----CeEEEecCCCeEEEeeeccCC-CcceeeeeeccC---CCce--EEEEeCCCCCeEEEEeCCcc
Q psy11529         10 NPVTTHAWNNTR-----QQLAFTPNNQEVHLYQYEKAA-NDWSQLDVLDGH---DLKV--TGIDWAPNTNRIVTCSADRN   78 (244)
Q Consensus        10 ~~v~~~~~~~~~-----~~l~~~~~d~~v~v~~~~~~~-~~~~~~~~~~~~---~~~v--~~~~~~~~~~~l~~~~~d~~   78 (244)
                      +-|..+.|.|-+     .+||+- ..+.|.||.+.... +.-+.+..-..+   .-+|  ..+.|+|....|+.-.....
T Consensus        57 EhV~GlsW~P~~~~~~paLLAVQ-HkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dv  135 (671)
T PF15390_consen   57 EHVHGLSWAPPCTADTPALLAVQ-HKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDV  135 (671)
T ss_pred             ceeeeeeecCcccCCCCceEEEe-ccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCce
Confidence            678999999953     355554 56899999985310 111222111111   1122  46789998888876655544


Q ss_pred             EEEEeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCC-CeEEEEEe
Q psy11529         79 AYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGA-RLISVCYF  130 (244)
Q Consensus        79 i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-~~i~i~d~  130 (244)
                      -.++++...+.+  .... ....+.|.|.+|.+||+.|+++-.. =.-+|||-
T Consensus       136 SV~~sV~~d~sr--VkaD-i~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~  185 (671)
T PF15390_consen  136 SVLPSVHCDSSR--VKAD-IKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDS  185 (671)
T ss_pred             eEeeeeeeCCce--EEEe-ccCCceEEEEEecCcCCEEEEEeCCeEEEEEecC
Confidence            456664222222  2222 2467889999999999988776543 23445553

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=96.80  E-value=0.17  Score=39.60  Aligned_cols=149  Identities=8%  Similarity=0.087  Sum_probs=71.7

Q ss_pred             EEEEEcCCCCeEEEec--------------------CCCeEEEeeeccCCCcceeeeeeccCC--CceEEEEeCC--CCC
Q psy11529         13 TTHAWNNTRQQLAFTP--------------------NNQEVHLYQYEKAANDWSQLDVLDGHD--LKVTGIDWAP--NTN   68 (244)
Q Consensus        13 ~~~~~~~~~~~l~~~~--------------------~d~~v~v~~~~~~~~~~~~~~~~~~~~--~~v~~~~~~~--~~~   68 (244)
                      ..+-|.|..+.++++.                    ....+.+||+..  .  +.++++.--+  .....+.|..  +..
T Consensus       184 YDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~--r--~~~Q~idLg~~g~~pLEvRflH~P~~~  259 (461)
T PF05694_consen  184 YDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWST--R--KLLQTIDLGEEGQMPLEVRFLHDPDAN  259 (461)
T ss_dssp             --EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTT--T--EEEEEEES-TTEEEEEEEEE-SSTT--
T ss_pred             CCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCC--C--cEeeEEecCCCCCceEEEEecCCCCcc
Confidence            4556677666676652                    236899999987  5  5555555322  3456677754  444


Q ss_pred             e-EEEEeCCccEEEEeeeCCCCCceeeE--EEecc-----------------CcceEEEEECCCCCeEEEeeC-CCeEEE
Q psy11529         69 R-IVTCSADRNAYVWTQNNDDKKWKPTL--VLLRI-----------------NRAATCVKWSPLENKFAAGSG-ARLISV  127 (244)
Q Consensus        69 ~-l~~~~~d~~i~iwd~~~~~~~~~~~~--~~~~~-----------------~~~v~~~~~~~~~~~l~~~~~-d~~i~i  127 (244)
                      + ++.+.-..+|..|-- ...+++....  .+...                 +.-++.|..|.|+++|++++. +|.++.
T Consensus       260 ~gFvg~aLss~i~~~~k-~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~Gdvrq  338 (461)
T PF05694_consen  260 YGFVGCALSSSIWRFYK-DDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQ  338 (461)
T ss_dssp             EEEEEEE--EEEEEEEE--ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEE
T ss_pred             ceEEEEeccceEEEEEE-cCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEE
Confidence            4 333333445554431 2444443222  21111                 244789999999999888775 899999


Q ss_pred             EEeecCCCceEEEeeecC---------------CCCceeEEEecCCCCEEEEee
Q psy11529        128 CYFESENDWWVAKHIKKP---------------IKSTITCLDWHPNNHLLGCGS  166 (244)
Q Consensus       128 ~d~~~~~~~~~~~~~~~~---------------~~~~v~~~~~~p~~~~l~~~~  166 (244)
                      ||+.....-........+               ..+...-+..|.||+.|+..+
T Consensus       339 YDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn  392 (461)
T PF05694_consen  339 YDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN  392 (461)
T ss_dssp             EE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE-
T ss_pred             EecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence            999886653333322211               123446678888898776543

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=96.74  E-value=0.0083  Score=30.07  Aligned_cols=31  Identities=23%  Similarity=0.588  Sum_probs=25.8

Q ss_pred             CCeEEEEEecCC---CEEEEeeCCCcEEEEeCCC
Q psy11529        211 GWIHSVAFSKDG---NKLCWTSHDGSINVRMSQQ  241 (244)
Q Consensus       211 ~~v~~~~~s~~~---~~l~~~~~dg~i~vwd~~~  241 (244)
                      +.++++.|||..   .+|+.+-.-|.|.|+|+++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            358999999844   4888888889999999993

It contains a characteristic DLL sequence motif.

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=96.73  E-value=0.24  Score=41.53  Aligned_cols=119  Identities=18%  Similarity=0.128  Sum_probs=74.7

Q ss_pred             ceEEEEECC--CCCeEEEeeCCCeEEEEEeecCC--------Cce-------EEEeeecCCCCceeEEEec--CCCCEEE
Q psy11529        103 AATCVKWSP--LENKFAAGSGARLISVCYFESEN--------DWW-------VAKHIKKPIKSTITCLDWH--PNNHLLG  163 (244)
Q Consensus       103 ~v~~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~--------~~~-------~~~~~~~~~~~~v~~~~~~--p~~~~l~  163 (244)
                      .|+.|....  +...|+.|.+||.|.+|..+.--        ...       ............+++++++  ...++||
T Consensus       102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIA  181 (717)
T PF08728_consen  102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIA  181 (717)
T ss_pred             eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEE
Confidence            345454433  34578899999999999763210        000       0001112234578899998  7888999


Q ss_pred             EeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCC---C---EEEEeeCCCcEEEE
Q psy11529        164 CGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDG---N---KLCWTSHDGSINVR  237 (244)
Q Consensus       164 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~---~---~l~~~~~dg~i~vw  237 (244)
                      ++++...|.||-....+.+              .....+.. +   ...|.+++|-++.   .   +|++++-.|.+.+|
T Consensus       182 VSsNs~~VTVFaf~l~~~r--------------~~~~~s~~-~---~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~  243 (717)
T PF08728_consen  182 VSSNSQEVTVFAFALVDER--------------FYHVPSHQ-H---SHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTF  243 (717)
T ss_pred             EecCCceEEEEEEeccccc--------------cccccccc-c---ccCCCeeEeecCCCCCccceEEEEEeccCcEEEE
Confidence            9999999999877432111              00000111 2   6678999998743   2   77888889999998


Q ss_pred             eC
Q psy11529        238 MS  239 (244)
Q Consensus       238 d~  239 (244)
                      ++
T Consensus       244 ~I  245 (717)
T PF08728_consen  244 KI  245 (717)
T ss_pred             EE
Confidence            87

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PRK10115 protease 2; Provisional

Probab=96.71  E-value=0.31  Score=41.36  Aligned_cols=114  Identities=10%  Similarity=0.053  Sum_probs=63.7

Q ss_pred             ceEEEEEcCCCCeEEEecC-----CCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCC------ccE
Q psy11529         11 PVTTHAWNNTRQQLAFTPN-----NQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSAD------RNA   79 (244)
Q Consensus        11 ~v~~~~~~~~~~~l~~~~~-----d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------~~i   79 (244)
                      .+..+.|+|||++|+.+..     .-.|++.++.+  +. .....+.+ .  -..++|++|++.|+....+      ..|
T Consensus       128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~t--g~-~l~~~i~~-~--~~~~~w~~D~~~~~y~~~~~~~~~~~~v  201 (686)
T PRK10115        128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLET--GN-WYPELLDN-V--EPSFVWANDSWTFYYVRKHPVTLLPYQV  201 (686)
T ss_pred             EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCC--CC-CCCccccC-c--ceEEEEeeCCCEEEEEEecCCCCCCCEE
Confidence            3667889999999987632     23688888866  31 11122222 1  1458999998877655432      356


Q ss_pred             EEEeeeCCCCCceeeEEEeccCcceE-EEEECCCCCeEEEeeC---CCeEEEEEeec
Q psy11529         80 YVWTQNNDDKKWKPTLVLLRINRAAT-CVKWSPLENKFAAGSG---ARLISVCYFES  132 (244)
Q Consensus        80 ~iwd~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~---d~~i~i~d~~~  132 (244)
                      ..++  +.++................ .+..+.++++++..+.   ++.+.+++.+.
T Consensus       202 ~~h~--lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~  256 (686)
T PRK10115        202 WRHT--IGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAEL  256 (686)
T ss_pred             EEEE--CCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcC
Confidence            6666  66662222222222223233 3334547777655433   45677777533

>KOG2377|consensus

Probab=96.70  E-value=0.11  Score=40.74  Aligned_cols=144  Identities=10%  Similarity=0.107  Sum_probs=84.2

Q ss_pred             EEEEeCCCCCeEEEEeCCccEEEEeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceE
Q psy11529         59 TGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWV  138 (244)
Q Consensus        59 ~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~  138 (244)
                      +.+-|.. .+..+.+...|.+.-|-+.-.+.. .+...-....++|.++.|++|.+.+|+--.+..|.+++....+....
T Consensus        26 ngvFfDD-aNkqlfavrSggatgvvvkgpndD-VpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~  103 (657)
T KOG2377|consen   26 NGVFFDD-ANKQLFAVRSGGATGVVVKGPNDD-VPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLE  103 (657)
T ss_pred             cceeecc-CcceEEEEecCCeeEEEEeCCCCC-CCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhH
Confidence            4454544 333333444556666663222222 22222234567999999999999999999999999998855443111


Q ss_pred             EEeeecCCCCceeEEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEE
Q psy11529        139 AKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAF  218 (244)
Q Consensus       139 ~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  218 (244)
                      .....+.....|....|+.. .-+|.-+..| +-+|...                 .....+...+.+   ...|.=..|
T Consensus       104 ~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~-----------------pekrslRlVks~---~~nvnWy~y  161 (657)
T KOG2377|consen  104 YTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVL-----------------PEKRSLRLVKSH---NLNVNWYMY  161 (657)
T ss_pred             HHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEc-----------------hhhhhhhhhhhc---ccCccEEEE
Confidence            22222333456889999876 4566655555 5666652                 122333334444   566777777


Q ss_pred             ecCCCEEE
Q psy11529        219 SKDGNKLC  226 (244)
Q Consensus       219 s~~~~~l~  226 (244)
                      +++-+.++
T Consensus       162 c~et~v~L  169 (657)
T KOG2377|consen  162 CPETAVIL  169 (657)
T ss_pred             ccccceEe
Confidence            87776443

>PRK13684 Ycf48-like protein; Provisional

Probab=96.70  E-value=0.18  Score=38.62  Aligned_cols=155  Identities=8%  Similarity=0.127  Sum_probs=86.3

Q ss_pred             CCceEEEEEcCCCCeEEEecCCCeEEEe-eeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCC
Q psy11529          9 INPVTTHAWNNTRQQLAFTPNNQEVHLY-QYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNND   87 (244)
Q Consensus         9 ~~~v~~~~~~~~~~~l~~~~~d~~v~v~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~   87 (244)
                      ...+.++.+.|++.+++++. .|.+..- +-..  ..+..+.  ..-...++++.+.++++.++.+ ..|.+.+=.  ..
T Consensus       172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~s~~~gg--~tW~~~~--~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s--~d  243 (334)
T PRK13684        172 AGVVRNLRRSPDGKYVAVSS-RGNFYSTWEPGQ--TAWTPHQ--RNSSRRLQSMGFQPDGNLWMLA-RGGQIRFND--PD  243 (334)
T ss_pred             cceEEEEEECCCCeEEEEeC-CceEEEEcCCCC--CeEEEee--CCCcccceeeeEcCCCCEEEEe-cCCEEEEcc--CC
Confidence            45688899999987777664 4654432 2221  2233332  2345678999999988876665 456664422  22


Q ss_pred             CCC-ceeeEEE-eccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEe
Q psy11529         88 DKK-WKPTLVL-LRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCG  165 (244)
Q Consensus        88 ~~~-~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~  165 (244)
                      .+. +...... ......+..+.+.|++..+++ +.+|.+.. ..+.++. |...............+.|..+++.+++ 
T Consensus       244 ~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~-G~~G~v~~-S~d~G~t-W~~~~~~~~~~~~~~~~~~~~~~~~~~~-  319 (334)
T PRK13684        244 DLESWSKPIIPEITNGYGYLDLAYRTPGEIWAG-GGNGTLLV-SKDGGKT-WEKDPVGEEVPSNFYKIVFLDPEKGFVL-  319 (334)
T ss_pred             CCCccccccCCccccccceeeEEEcCCCCEEEE-cCCCeEEE-eCCCCCC-CeECCcCCCCCcceEEEEEeCCCceEEE-
Confidence            332 2211110 011235778899998765554 45665543 3333333 2222111222346778888877766665 


Q ss_pred             eCCCeEEEEE
Q psy11529        166 STDFKVRVFS  175 (244)
Q Consensus       166 ~~dg~i~i~d  175 (244)
                      +..|.|.-|+
T Consensus       320 G~~G~il~~~  329 (334)
T PRK13684        320 GQRGVLLRYV  329 (334)
T ss_pred             CCCceEEEec
Confidence            5678887776

>KOG2247|consensus

Probab=96.69  E-value=0.00074  Score=52.37  Aligned_cols=136  Identities=14%  Similarity=0.190  Sum_probs=94.0

Q ss_pred             EEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEE-EEeCCccEEEEeeeCCCCCce
Q psy11529         14 THAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIV-TCSADRNAYVWTQNNDDKKWK   92 (244)
Q Consensus        14 ~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~iwd~~~~~~~~~   92 (244)
                      ...|-|++.-++.++.+..+..||-.+     +...... .++....++|..++..++ .+-..+.+.+||  +.+.. .
T Consensus        39 ~~~w~~e~~nlavaca~tiv~~YD~ag-----q~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd--~n~ey-t  109 (615)
T KOG2247|consen   39 IHRWRPEGHNLAVACANTIVIYYDKAG-----QVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWD--VNSEY-T  109 (615)
T ss_pred             eeeEecCCCceehhhhhhHHHhhhhhc-----ceecccC-CchhHhhhhhccccchhhhhhhcCCCeeech--hhhhh-H
Confidence            456888877788888889999999876     4444444 456667888988877554 455678999999  44332 1


Q ss_pred             eeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEE
Q psy11529         93 PTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLG  163 (244)
Q Consensus        93 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~  163 (244)
                      ..+.. +....-.-+.|++....++.+...+.+.|++..+.+.    ......|...++++++.+.+..+.
T Consensus       110 qqLE~-gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~----iiv~Gkh~RRgtq~av~lEd~vil  175 (615)
T KOG2247|consen  110 QQLES-GGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRR----IIVMGKHQRRGTQIAVTLEDYVIL  175 (615)
T ss_pred             HHHhc-cCcchHHHHhhccCCccccccccccceEEEeccchhh----hhhhcccccceeEEEecccceeee
Confidence            12221 2222333378999989999999999999998877654    233334778899999998775443

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=96.68  E-value=0.16  Score=43.02  Aligned_cols=75  Identities=13%  Similarity=0.172  Sum_probs=51.6

Q ss_pred             cceEEEEECCCCCeEEEeeCCCeEEEEEeecC----------CCceEEEeee-------cCCCCceeEEEecCC---CCE
Q psy11529        102 RAATCVKWSPLENKFAAGSGARLISVCYFESE----------NDWWVAKHIK-------KPIKSTITCLDWHPN---NHL  161 (244)
Q Consensus       102 ~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~----------~~~~~~~~~~-------~~~~~~v~~~~~~p~---~~~  161 (244)
                      -.|..+.++|+|++++..+..+.. |..+...          .....++...       ......|..+.|+|.   +..
T Consensus        85 f~v~~i~~n~~g~~lal~G~~~v~-V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~  163 (717)
T PF10168_consen   85 FEVHQISLNPTGSLLALVGPRGVV-VLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH  163 (717)
T ss_pred             eeEEEEEECCCCCEEEEEcCCcEE-EEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence            468889999999999999887744 4334221          1111122111       123457899999996   478


Q ss_pred             EEEeeCCCeEEEEEee
Q psy11529        162 LGCGSTDFKVRVFSAY  177 (244)
Q Consensus       162 l~~~~~dg~i~i~d~~  177 (244)
                      |++=+.|+++++||+.
T Consensus       164 l~vLtsdn~lR~y~~~  179 (717)
T PF10168_consen  164 LVVLTSDNTLRLYDIS  179 (717)
T ss_pred             EEEEecCCEEEEEecC
Confidence            8888999999999995

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=96.54  E-value=0.25  Score=38.10  Aligned_cols=59  Identities=8%  Similarity=0.133  Sum_probs=28.4

Q ss_pred             ccEEEEeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCC------CeEEEEEeecCCCceE
Q psy11529         77 RNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGA------RLISVCYFESENDWWV  138 (244)
Q Consensus        77 ~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------~~i~i~d~~~~~~~~~  138 (244)
                      ..+.+||  ..+.++.....+......-.+++ .-++++++.|+.+      ..+..++++.....|.
T Consensus       168 ~~v~~YD--p~t~~W~~~~~~p~~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~  232 (346)
T TIGR03547       168 KNVLSYD--PSTNQWRNLGENPFLGTAGSAIV-HKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWN  232 (346)
T ss_pred             ceEEEEE--CCCCceeECccCCCCcCCCceEE-EECCEEEEEeeeeCCCccchheEEEEecCCCceee
Confidence            4577888  77776654433221111112222 2255666666643      1244566654444343

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=96.53  E-value=0.24  Score=37.84  Aligned_cols=167  Identities=11%  Similarity=0.085  Sum_probs=93.9

Q ss_pred             CCceEEEEEcCCCCeEEEecCCCe------EEEeeeccCCCccee-----eeeeccCCC--------ceEEEEeCCCCCe
Q psy11529          9 INPVTTHAWNNTRQQLAFTPNNQE------VHLYQYEKAANDWSQ-----LDVLDGHDL--------KVTGIDWAPNTNR   69 (244)
Q Consensus         9 ~~~v~~~~~~~~~~~l~~~~~d~~------v~v~~~~~~~~~~~~-----~~~~~~~~~--------~v~~~~~~~~~~~   69 (244)
                      -+.++.+.+.+++..+++-+.++.      +..+++....+....     ...+..-.+        -..+|++.+++.+
T Consensus        19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~   98 (326)
T PF13449_consen   19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSF   98 (326)
T ss_pred             cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCE
Confidence            467889999965555555556666      555554331110111     111221111        3347888778888


Q ss_pred             EEEEeCC------ccEEEEeeeCCCCCceeeEEE-------------eccCcceEEEEECCCCCeEEEeeC-----CC--
Q psy11529         70 IVTCSAD------RNAYVWTQNNDDKKWKPTLVL-------------LRINRAATCVKWSPLENKFAAGSG-----AR--  123 (244)
Q Consensus        70 l~~~~~d------~~i~iwd~~~~~~~~~~~~~~-------------~~~~~~v~~~~~~~~~~~l~~~~~-----d~--  123 (244)
                      +++.-.+      ..|..++  .. ++....+.+             ...+....+++++|+|+.|+++..     |+  
T Consensus        99 ~is~E~~~~~~~~p~I~~~~--~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~  175 (326)
T PF13449_consen   99 WISSEGGRTGGIPPRIRRFD--LD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPR  175 (326)
T ss_pred             EEEeCCccCCCCCCEEEEEC--CC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcc
Confidence            8776666      7787777  44 544322211             123556889999999997666543     22  


Q ss_pred             -------eEEEEEeecCC---CceEEEeeecC-----CCCceeEEEecCCCCEEEEeeC-----CCeEEEEEeee
Q psy11529        124 -------LISVCYFESEN---DWWVAKHIKKP-----IKSTITCLDWHPNNHLLGCGST-----DFKVRVFSAYI  178 (244)
Q Consensus       124 -------~i~i~d~~~~~---~~~~~~~~~~~-----~~~~v~~~~~~p~~~~l~~~~~-----dg~i~i~d~~~  178 (244)
                             .++++.++...   ..........+     ....++.+.+-+++++|+.--.     ...++||.+..
T Consensus       176 ~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri~~v~l  250 (326)
T PF13449_consen  176 ANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKRIYRVDL  250 (326)
T ss_pred             cccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEEEEEEEc
Confidence                   15666655432   11111111121     3468899999999997775332     34566666643

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=96.50  E-value=0.29  Score=38.41  Aligned_cols=151  Identities=9%  Similarity=0.126  Sum_probs=82.0

Q ss_pred             eEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCCCCCc
Q psy11529         12 VTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKW   91 (244)
Q Consensus        12 v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~   91 (244)
                      ...+..+++|.+++++.....++-|+-..  ..|+.+ ... ....+.++.|.+++..++++ ..|.+..=+   ..++.
T Consensus       241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~--~~W~~~-~~~-~~~~l~~v~~~~dg~l~l~g-~~G~l~~S~---d~G~~  312 (398)
T PLN00033        241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQ--PYWQPH-NRA-SARRIQNMGWRADGGLWLLT-RGGGLYVSK---GTGLT  312 (398)
T ss_pred             eeeEEEcCCCCEEEEECCccEEEecCCCC--cceEEe-cCC-CccceeeeeEcCCCCEEEEe-CCceEEEec---CCCCc
Confidence            44556678888877775432222233221  101222 222 35568899999988877665 556654322   33321


Q ss_pred             ee--eEEEec---cCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEee
Q psy11529         92 KP--TLVLLR---INRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGS  166 (244)
Q Consensus        92 ~~--~~~~~~---~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~  166 (244)
                      -.  .+....   ....+..+.|.+++..+++ +..|.+..- .+.++. |...............+.|.++++.+++| 
T Consensus       313 ~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~-G~~G~v~~s-~D~G~t-W~~~~~~~~~~~~ly~v~f~~~~~g~~~G-  388 (398)
T PLN00033        313 EEDFDFEEADIKSRGFGILDVGYRSKKEAWAA-GGSGILLRS-TDGGKS-WKRDKGADNIAANLYSVKFFDDKKGFVLG-  388 (398)
T ss_pred             ccccceeecccCCCCcceEEEEEcCCCcEEEE-ECCCcEEEe-CCCCcc-eeEccccCCCCcceeEEEEcCCCceEEEe-
Confidence            10  111111   2235888999988766555 456755542 233332 33322223334678899998887777665 


Q ss_pred             CCCeEEEE
Q psy11529        167 TDFKVRVF  174 (244)
Q Consensus       167 ~dg~i~i~  174 (244)
                      .+|.|.-|
T Consensus       389 ~~G~il~~  396 (398)
T PLN00033        389 NDGVLLRY  396 (398)
T ss_pred             CCcEEEEe
Confidence            67776544

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=96.48  E-value=0.016  Score=29.02  Aligned_cols=32  Identities=22%  Similarity=0.287  Sum_probs=26.7

Q ss_pred             cceEEEEECCCC---CeEEEeeCCCeEEEEEeecC
Q psy11529        102 RAATCVKWSPLE---NKFAAGSGARLISVCYFESE  133 (244)
Q Consensus       102 ~~v~~~~~~~~~---~~l~~~~~d~~i~i~d~~~~  133 (244)
                      +.++++.|+|+.   .+|+.+-..+.+.|+|+++.
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~   35 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN   35 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence            368899999864   58888888999999999853

It contains a characteristic DLL sequence motif.

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=96.47  E-value=0.27  Score=37.70  Aligned_cols=105  Identities=11%  Similarity=0.119  Sum_probs=55.1

Q ss_pred             ceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeee----ccCCCceEEEEeCCC---CCeEE-EEeC------C
Q psy11529         11 PVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVL----DGHDLKVTGIDWAPN---TNRIV-TCSA------D   76 (244)
Q Consensus        11 ~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~----~~~~~~v~~~~~~~~---~~~l~-~~~~------d   76 (244)
                      .-++|+|.|||++|++- ..|.|++++..+  .....+..+    .........++++|+   ..+|. +.+.      .
T Consensus         3 ~P~~~a~~pdG~l~v~e-~~G~i~~~~~~g--~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~   79 (331)
T PF07995_consen    3 NPRSMAFLPDGRLLVAE-RSGRIWVVDKDG--SLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGD   79 (331)
T ss_dssp             SEEEEEEETTSCEEEEE-TTTEEEEEETTT--EECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSS
T ss_pred             CceEEEEeCCCcEEEEe-CCceEEEEeCCC--cCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCC
Confidence            35789999999887764 589999999433  110222222    234567899999994   23333 3331      1


Q ss_pred             --ccEEEEeeeCCCC--Cc---eeeE-EEec---cCcceEEEEECCCCCeEEEee
Q psy11529         77 --RNAYVWTQNNDDK--KW---KPTL-VLLR---INRAATCVKWSPLENKFAAGS  120 (244)
Q Consensus        77 --~~i~iwd~~~~~~--~~---~~~~-~~~~---~~~~v~~~~~~~~~~~l~~~~  120 (244)
                        ..|.-|.  ...+  ..   ...+ ....   .......+.|.|+|.++++.+
T Consensus        80 ~~~~v~r~~--~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G  132 (331)
T PF07995_consen   80 NDNRVVRFT--LSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVG  132 (331)
T ss_dssp             EEEEEEEEE--EETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB
T ss_pred             cceeeEEEe--ccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeC
Confidence              2344444  3322  11   1111 1111   234456799999996655544

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=96.41  E-value=0.23  Score=36.25  Aligned_cols=187  Identities=9%  Similarity=0.016  Sum_probs=99.1

Q ss_pred             eEEEEEcCCCCeEEEecCCC--eEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCCCC
Q psy11529         12 VTTHAWNNTRQQLAFTPNNQ--EVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDK   89 (244)
Q Consensus        12 v~~~~~~~~~~~l~~~~~d~--~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~   89 (244)
                      -..+.|..+|.++-+.+.-|  .|+.+|+.+  ++......+.. .---..++...+ +...-.=.++...+||  ..+-
T Consensus        47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~t--g~~~~~~~l~~-~~FgEGit~~~d-~l~qLTWk~~~~f~yd--~~tl  120 (264)
T PF05096_consen   47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLET--GKVLQSVPLPP-RYFGEGITILGD-KLYQLTWKEGTGFVYD--PNTL  120 (264)
T ss_dssp             EEEEEEEETTEEEEEECSTTEEEEEEEETTT--SSEEEEEE-TT-T--EEEEEEETT-EEEEEESSSSEEEEEE--TTTT
T ss_pred             CccEEecCCCEEEEeCCCCCcEEEEEEECCC--CcEEEEEECCc-cccceeEEEECC-EEEEEEecCCeEEEEc--cccc
Confidence            34677767777777776655  688888877  53333334432 222234444432 3333334588999999  6666


Q ss_pred             CceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCC-CCceeEEEecCCCCEEEEeeCC
Q psy11529         90 KWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPI-KSTITCLDWHPNNHLLGCGSTD  168 (244)
Q Consensus        90 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~-~~~v~~~~~~p~~~~l~~~~~d  168 (244)
                      +....+.   ..+.-+.++  .+++.|+.+.....+.++|.++-+..........+. -..++.+.|- +|...|=.-..
T Consensus       121 ~~~~~~~---y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~t  194 (264)
T PF05096_consen  121 KKIGTFP---YPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQT  194 (264)
T ss_dssp             EEEEEEE----SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTS
T ss_pred             eEEEEEe---cCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCC
Confidence            5444443   345556666  467788888888889998877655422222221111 1345556665 55554444455


Q ss_pred             CeEEEEEeeecccccCCCCCCCCccccccceeEEecCC------------CCCCCCeEEEEEecCCC-EEEEe
Q psy11529        169 FKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNS------------SSGGGWIHSVAFSKDGN-KLCWT  228 (244)
Q Consensus       169 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~v~~~~~s~~~~-~l~~~  228 (244)
                      ..|...|.                  .+++....+...            .....-.+.+|+.|... +++||
T Consensus       195 d~I~~Idp------------------~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG  249 (264)
T PF05096_consen  195 DRIVRIDP------------------ETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG  249 (264)
T ss_dssp             SEEEEEET------------------TT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred             CeEEEEeC------------------CCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence            66777776                  444444433110            00135688999998665 55555

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>KOG4499|consensus

Probab=96.40  E-value=0.21  Score=35.63  Aligned_cols=137  Identities=9%  Similarity=0.052  Sum_probs=80.9

Q ss_pred             CceEEEEEcCCCCeEEEecC----------CCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEE-EeCCcc
Q psy11529         10 NPVTTHAWNNTRQQLAFTPN----------NQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVT-CSADRN   78 (244)
Q Consensus        10 ~~v~~~~~~~~~~~l~~~~~----------d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d~~   78 (244)
                      ...+.-..+|+|++++ |..          .|.++.|-...     + +..+...-.--+.++|+.+.+.+.. -+.+-+
T Consensus       109 nR~NDgkvdP~Gryy~-GtMad~~~~le~~~g~Ly~~~~~h-----~-v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~  181 (310)
T KOG4499|consen  109 NRLNDGKVDPDGRYYG-GTMADFGDDLEPIGGELYSWLAGH-----Q-VELIWNCVGISNGLAWDSDAKKFYYIDSLNYE  181 (310)
T ss_pred             cccccCccCCCCceee-eeeccccccccccccEEEEeccCC-----C-ceeeehhccCCccccccccCcEEEEEccCceE
Confidence            4455556788888843 321          24555555543     1 1122222333467899987776654 455667


Q ss_pred             EEEEeeeCCCCCceee---EEEec----cCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCcee
Q psy11529         79 AYVWTQNNDDKKWKPT---LVLLR----INRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTIT  151 (244)
Q Consensus        79 i~iwd~~~~~~~~~~~---~~~~~----~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~  151 (244)
                      |.-||.+..++.....   +.+..    .....-.++...+|++.+++-..++|...|..+++.   +.....+ ...++
T Consensus       182 V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~---L~eiklP-t~qit  257 (310)
T KOG4499|consen  182 VDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKI---LLEIKLP-TPQIT  257 (310)
T ss_pred             EeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcE---EEEEEcC-CCceE
Confidence            7778865666643222   11111    111223455566788888888889999999999876   3333333 57899


Q ss_pred             EEEecC
Q psy11529        152 CLDWHP  157 (244)
Q Consensus       152 ~~~~~p  157 (244)
                      +++|--
T Consensus       258 sccFgG  263 (310)
T KOG4499|consen  258 SCCFGG  263 (310)
T ss_pred             EEEecC
Confidence            999974

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=96.35  E-value=0.21  Score=35.14  Aligned_cols=166  Identities=12%  Similarity=0.133  Sum_probs=88.4

Q ss_pred             eeEEeCCCceEEEEEcC-----CC-CeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCC
Q psy11529          3 EVYSFGINPVTTHAWNN-----TR-QQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSAD   76 (244)
Q Consensus         3 ~~~~~~~~~v~~~~~~~-----~~-~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d   76 (244)
                      ..|.|....|..+..-|     .| +.|..+.....|.+|++.+  ........+.. -+.|..+.++..|+|+++--.+
T Consensus         4 ~~H~F~sQ~v~~~~~EP~~~c~~g~d~Lfva~~g~~Vev~~l~~--~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~k   80 (215)
T PF14761_consen    4 NCHPFGSQNVVPCEQEPTAVCCGGPDALFVAASGCKVEVYDLEQ--EECPLLCTFST-VGRVLQLVYSEAGDYLVTLEEK   80 (215)
T ss_pred             EecccCCceeeccccCcceeeccCCceEEEEcCCCEEEEEEccc--CCCceeEEEcc-hhheeEEEeccccceEEEEEee
Confidence            34455444444444322     23 4444445567899999985  44466777764 4889999999999999986432


Q ss_pred             ---c---cEEEE---eeeCCCCCcee---------------------eEEEeccCcceEEEEECCCCCeEEEeeCCCeEE
Q psy11529         77 ---R---NAYVW---TQNNDDKKWKP---------------------TLVLLRINRAATCVKWSPLENKFAAGSGARLIS  126 (244)
Q Consensus        77 ---~---~i~iw---d~~~~~~~~~~---------------------~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~  126 (244)
                         .   .+++|   +..........                     ... ..-...+.+++-.|-..-|++|+ ++++.
T Consensus        81 ~~~~~~~fvR~Y~NWr~~~~~~~~v~vRiaG~~v~~~~~~~~~~qleiiE-lPl~~~p~ciaCC~~tG~LlVg~-~~~l~  158 (215)
T PF14761_consen   81 NKRSPVDFVRAYFNWRSQKEENSPVRVRIAGHRVTPSFNESSKDQLEIIE-LPLSEPPLCIACCPVTGNLLVGC-GNKLV  158 (215)
T ss_pred             cCCccceEEEEEEEhhhhcccCCcEEEEEcccccccCCCCccccceEEEE-ecCCCCCCEEEecCCCCCEEEEc-CCEEE
Confidence               2   45654   21000111110                     011 11234667777777544455554 45688


Q ss_pred             EEEeecCCCce-EEEe-ee-----c-CCCCceeEEEecCCCCEEEEeeCCCeEEEEEe
Q psy11529        127 VCYFESENDWW-VAKH-IK-----K-PIKSTITCLDWHPNNHLLGCGSTDFKVRVFSA  176 (244)
Q Consensus       127 i~d~~~~~~~~-~~~~-~~-----~-~~~~~v~~~~~~p~~~~l~~~~~dg~i~i~d~  176 (244)
                      +|.+....... .... -+     . ...-....+++.  +.++|..+ +-.++++.+
T Consensus       159 lf~l~~~~~~~~~~~~lDFe~~l~~~~~~~~p~~v~ic--~~yiA~~s-~~ev~Vlkl  213 (215)
T PF14761_consen  159 LFTLKYQTIQSEKFSFLDFERSLIDHIDNFKPTQVAIC--EGYIAVMS-DLEVLVLKL  213 (215)
T ss_pred             EEEEEEEEEecccccEEechhhhhheecCceEEEEEEE--eeEEEEec-CCEEEEEEE
Confidence            88876543200 0000 00     0 012234555655  45777765 455666654

>KOG3630|consensus

Probab=96.35  E-value=0.038  Score=47.74  Aligned_cols=151  Identities=13%  Similarity=0.122  Sum_probs=89.8

Q ss_pred             CCceEEEEEcCCCCeEEE--ecCCCeEEEeeeccCCC-cceeeeeecc------CCCceEEEEeCCCC-CeEEEEeCCcc
Q psy11529          9 INPVTTHAWNNTRQQLAF--TPNNQEVHLYQYEKAAN-DWSQLDVLDG------HDLKVTGIDWAPNT-NRIVTCSADRN   78 (244)
Q Consensus         9 ~~~v~~~~~~~~~~~l~~--~~~d~~v~v~~~~~~~~-~~~~~~~~~~------~~~~v~~~~~~~~~-~~l~~~~~d~~   78 (244)
                      .-++..+...+|+...++  .+++-.|..||+..-.. .++...-+..      ......++.|+|.- ...+.+..|+.
T Consensus       100 ~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dls  179 (1405)
T KOG3630|consen  100 EIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLS  179 (1405)
T ss_pred             cccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccc
Confidence            456677777888765443  34455788999854111 1111111221      23345678899843 23456677889


Q ss_pred             EEEEeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCC
Q psy11529         79 AYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPN  158 (244)
Q Consensus        79 i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~  158 (244)
                      |++..+  ....  +...........++++|+|.|+.++.|-..|++.-|...-............ ....|.+++|-..
T Consensus       180 l~V~~~--~~~~--~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~Pp~~-e~yrvl~v~Wl~t  254 (1405)
T KOG3630|consen  180 LRVKST--KQLA--QNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEPPVE-ENYRVLSVTWLST  254 (1405)
T ss_pred             hhhhhh--hhhh--hhhcccCcccceeeEEeccccceeeEecCCCeEEEeecccceeecccCCCcC-CCcceeEEEEecc
Confidence            988773  2211  1111123456789999999999999999999998876544321000111111 1468999999876


Q ss_pred             CCEEEE
Q psy11529        159 NHLLGC  164 (244)
Q Consensus       159 ~~~l~~  164 (244)
                      ..++++
T Consensus       255 ~eflvv  260 (1405)
T KOG3630|consen  255 QEFLVV  260 (1405)
T ss_pred             eeEEEE
Confidence            666554

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=96.33  E-value=0.27  Score=41.69  Aligned_cols=88  Identities=14%  Similarity=0.043  Sum_probs=53.1

Q ss_pred             CCceeEEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEE------ecCCCCCCCCeEEEEEec
Q psy11529        147 KSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVE------LNNSSSGGGWIHSVAFSK  220 (244)
Q Consensus       147 ~~~v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~v~~~~~s~  220 (244)
                      ...|..+.++|+|++++..+..| |.|-.+...-.   ......+.. ..-.+...      +..+  ....|..+.|+|
T Consensus        84 ~f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g---~~~~~~~g~-~~i~Crt~~v~~~~~~~~--~~~~i~qv~WhP  156 (717)
T PF10168_consen   84 LFEVHQISLNPTGSLLALVGPRG-VVVLELPRRWG---KNGEFEDGK-KEINCRTVPVDERFFTSN--SSLEIKQVRWHP  156 (717)
T ss_pred             ceeEEEEEECCCCCEEEEEcCCc-EEEEEeccccC---ccccccCCC-cceeEEEEEechhhccCC--CCceEEEEEEcC
Confidence            45889999999999999888766 45555521000   000000000 00011100      1111  156789999999


Q ss_pred             C---CCEEEEeeCCCcEEEEeCCC
Q psy11529        221 D---GNKLCWTSHDGSINVRMSQQ  241 (244)
Q Consensus       221 ~---~~~l~~~~~dg~i~vwd~~~  241 (244)
                      .   +..|+.-.+|+++++||+.+
T Consensus       157 ~s~~~~~l~vLtsdn~lR~y~~~~  180 (717)
T PF10168_consen  157 WSESDSHLVVLTSDNTLRLYDISD  180 (717)
T ss_pred             CCCCCCeEEEEecCCEEEEEecCC
Confidence            6   46888888999999999975

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=96.32  E-value=0.097  Score=40.06  Aligned_cols=54  Identities=9%  Similarity=0.059  Sum_probs=33.3

Q ss_pred             ceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEe---eecCCCCceeEEEecCC
Q psy11529        103 AATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKH---IKKPIKSTITCLDWHPN  158 (244)
Q Consensus       103 ~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~---~~~~~~~~v~~~~~~p~  158 (244)
                      ..+.|+|.|+++.++ +...|.|++++ ..+........   ...........++++|+
T Consensus         3 ~P~~~a~~pdG~l~v-~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~   59 (331)
T PF07995_consen    3 NPRSMAFLPDGRLLV-AERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPD   59 (331)
T ss_dssp             SEEEEEEETTSCEEE-EETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TT
T ss_pred             CceEEEEeCCCcEEE-EeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccc
Confidence            467899999987655 56699999987 22221011111   12233467899999994

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>KOG4499|consensus

Probab=96.26  E-value=0.25  Score=35.21  Aligned_cols=139  Identities=13%  Similarity=0.121  Sum_probs=84.6

Q ss_pred             CCceEEEEeCCCCCeEEEEeCC---------ccEEEEeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEe-eCCCe
Q psy11529         55 DLKVTGIDWAPNTNRIVTCSAD---------RNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAG-SGARL  124 (244)
Q Consensus        55 ~~~v~~~~~~~~~~~l~~~~~d---------~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~  124 (244)
                      +.+.+.-..+|+|++++-.-.|         |.++.|-  . .++..   .....-..-+.++|+.+.+.+... +.+-.
T Consensus       108 knR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~--~-~h~v~---~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~  181 (310)
T KOG4499|consen  108 KNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWL--A-GHQVE---LIWNCVGISNGLAWDSDAKKFYYIDSLNYE  181 (310)
T ss_pred             hcccccCccCCCCceeeeeeccccccccccccEEEEec--c-CCCce---eeehhccCCccccccccCcEEEEEccCceE
Confidence            4456677789999985432222         4455554  2 22211   111223344678998887766654 44667


Q ss_pred             EEEEEeecCCC-------ceEEEeeecCCCCceeEEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCcccccc
Q psy11529        125 ISVCYFESEND-------WWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLG  197 (244)
Q Consensus       125 i~i~d~~~~~~-------~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~  197 (244)
                      |.-||++-...       +...+....-..-..-.++...+|++.++.-+.++|...|.                  .++
T Consensus       182 V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp------------------~tG  243 (310)
T KOG4499|consen  182 VDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDP------------------TTG  243 (310)
T ss_pred             EeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECC------------------CCC
Confidence            77788543321       11111110001122334566778888888888899999998                  789


Q ss_pred             ceeEEecCCCCCCCCeEEEEEec
Q psy11529        198 NCLVELNNSSSGGGWIHSVAFSK  220 (244)
Q Consensus       198 ~~~~~~~~~~~~~~~v~~~~~s~  220 (244)
                      +.+.++...   ...+++++|--
T Consensus       244 K~L~eiklP---t~qitsccFgG  263 (310)
T KOG4499|consen  244 KILLEIKLP---TPQITSCCFGG  263 (310)
T ss_pred             cEEEEEEcC---CCceEEEEecC
Confidence            999999887   88899999964

>PHA03098 kelch-like protein; Provisional

Probab=96.16  E-value=0.37  Score=39.63  Aligned_cols=146  Identities=10%  Similarity=0.092  Sum_probs=70.7

Q ss_pred             CCCeEEEecCC-----CeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCC------ccEEEEeeeCCC
Q psy11529         20 TRQQLAFTPNN-----QEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSAD------RNAYVWTQNNDD   88 (244)
Q Consensus        20 ~~~~l~~~~~d-----~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------~~i~iwd~~~~~   88 (244)
                      +++.++.||.+     ..+..||..+  +.|.....+....... +++. -+++..+.|+.+      ..+..||  ..+
T Consensus       342 ~~~lyv~GG~~~~~~~~~v~~yd~~~--~~W~~~~~lp~~r~~~-~~~~-~~~~iYv~GG~~~~~~~~~~v~~yd--~~t  415 (534)
T PHA03098        342 NNRIYVIGGIYNSISLNTVESWKPGE--SKWREEPPLIFPRYNP-CVVN-VNNLIYVIGGISKNDELLKTVECFS--LNT  415 (534)
T ss_pred             CCEEEEEeCCCCCEecceEEEEcCCC--CceeeCCCcCcCCccc-eEEE-ECCEEEEECCcCCCCcccceEEEEe--CCC
Confidence            56677777754     3577788766  5555544433211111 1222 246666666632      4578888  666


Q ss_pred             CCceeeEEEeccCcceEEEEECCCCCeEEEeeCC--------CeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCC
Q psy11529         89 KKWKPTLVLLRINRAATCVKWSPLENKFAAGSGA--------RLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNH  160 (244)
Q Consensus        89 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--------~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~  160 (244)
                      +++.....++........+.  .++..++.|+.+        ..+.+||..+.+  |...............+.+  +++
T Consensus       416 ~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~--W~~~~~~~~~r~~~~~~~~--~~~  489 (534)
T PHA03098        416 NKWSKGSPLPISHYGGCAIY--HDGKIYVIGGISYIDNIKVYNIVESYNPVTNK--WTELSSLNFPRINASLCIF--NNK  489 (534)
T ss_pred             CeeeecCCCCccccCceEEE--ECCEEEEECCccCCCCCcccceEEEecCCCCc--eeeCCCCCcccccceEEEE--CCE
Confidence            66543322111111112222  245566666542        136677766543  3222211111111222222  566


Q ss_pred             EEEEeeCC-----CeEEEEEee
Q psy11529        161 LLGCGSTD-----FKVRVFSAY  177 (244)
Q Consensus       161 ~l~~~~~d-----g~i~i~d~~  177 (244)
                      +++.|+.+     ..+.+||..
T Consensus       490 iyv~GG~~~~~~~~~v~~yd~~  511 (534)
T PHA03098        490 IYVVGGDKYEYYINEIEVYDDK  511 (534)
T ss_pred             EEEEcCCcCCcccceeEEEeCC
Confidence            77777654     467788863

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=96.08  E-value=0.3  Score=34.36  Aligned_cols=107  Identities=11%  Similarity=0.178  Sum_probs=63.9

Q ss_pred             CeEEEEeCCccEEEEeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCC------eEEEE-EeecC----CCc
Q psy11529         68 NRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGAR------LISVC-YFESE----NDW  136 (244)
Q Consensus        68 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~------~i~i~-d~~~~----~~~  136 (244)
                      ..|+.+...+.|.+|+  +..........+ ..-+.|..+.++..|+++++--.+.      .+|+| +|+..    .+.
T Consensus        29 d~Lfva~~g~~Vev~~--l~~~~~~~~~~F-~Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v  105 (215)
T PF14761_consen   29 DALFVAASGCKVEVYD--LEQEECPLLCTF-STVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPV  105 (215)
T ss_pred             ceEEEEcCCCEEEEEE--cccCCCceeEEE-cchhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcE
Confidence            3444445677899999  554444444443 3448899999999999999965422      45554 23322    110


Q ss_pred             e------------------EEEeeecCCCCceeEEEecC-CCCEEEEeeCCCeEEEEEeeec
Q psy11529        137 W------------------VAKHIKKPIKSTITCLDWHP-NNHLLGCGSTDFKVRVFSAYIK  179 (244)
Q Consensus       137 ~------------------~~~~~~~~~~~~v~~~~~~p-~~~~l~~~~~dg~i~i~d~~~~  179 (244)
                      .                  .......+....+.+++-.| .|++++ |+ ++.+.+|.+...
T Consensus       106 ~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlV-g~-~~~l~lf~l~~~  165 (215)
T PF14761_consen  106 RVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLV-GC-GNKLVLFTLKYQ  165 (215)
T ss_pred             EEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEE-Ec-CCEEEEEEEEEE
Confidence            0                  01122223355778888888 555554 43 567999998543

>KOG2280|consensus

Probab=96.05  E-value=0.33  Score=40.45  Aligned_cols=159  Identities=12%  Similarity=0.108  Sum_probs=77.3

Q ss_pred             CceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceee-eeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCCC
Q psy11529         10 NPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQL-DVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDD   88 (244)
Q Consensus        10 ~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~   88 (244)
                      .++-.+.|+.+..+|+. ..+|+++||++-+  ...+.. .-.......|..+.|..+|-.+.+  .+|.+.+-.- .+.
T Consensus        84 ~~lI~mgWs~~eeLI~v-~k~g~v~Vy~~~g--e~ie~~svg~e~~~~~I~ec~~f~~GVavlt--~~g~v~~i~~-~~~  157 (829)
T KOG2280|consen   84 GELIGMGWSDDEELICV-QKDGTVHVYGLLG--EFIESNSVGFESQMSDIVECRFFHNGVAVLT--VSGQVILING-VEE  157 (829)
T ss_pred             CCeeeecccCCceEEEE-eccceEEEeecch--hhhcccccccccccCceeEEEEecCceEEEe--cCCcEEEEcC-CCc
Confidence            47778999987766655 5799999999976  211111 111223344555555555644444  3455554330 111


Q ss_pred             CCceeeEEEeccCcceEEEEECCCCC---eEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEe
Q psy11529         89 KKWKPTLVLLRINRAATCVKWSPLEN---KFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCG  165 (244)
Q Consensus        89 ~~~~~~~~~~~~~~~v~~~~~~~~~~---~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~  165 (244)
                      .........+.......|-...+++.   .++-....--..++-.+....   .........+.+..+..||+.++|+--
T Consensus       158 ~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~---q~~~~~~~~~~~~ki~VS~n~~~laLy  234 (829)
T KOG2280|consen  158 PKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRV---QLHALSWPNSSVVKISVSPNRRFLALY  234 (829)
T ss_pred             chhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecccc---cccccCCCCceEEEEEEcCCcceEEEE
Confidence            11000000011111212322222221   111111000011222222211   112222224678889999999999999


Q ss_pred             eCCCeEEEEEee
Q psy11529        166 STDFKVRVFSAY  177 (244)
Q Consensus       166 ~~dg~i~i~d~~  177 (244)
                      +++|.|.+-+..
T Consensus       235 t~~G~i~~vs~D  246 (829)
T KOG2280|consen  235 TETGKIWVVSID  246 (829)
T ss_pred             ecCCcEEEEecc
Confidence            999999988873

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=96.04  E-value=0.53  Score=36.85  Aligned_cols=55  Identities=18%  Similarity=0.184  Sum_probs=26.6

Q ss_pred             CCCeEEEecCC-----------CeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCC
Q psy11529         20 TRQQLAFTPNN-----------QEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSAD   76 (244)
Q Consensus        20 ~~~~l~~~~~d-----------~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d   76 (244)
                      +++.++.|+..           ..+..||...  +.|..+.........-.+....-+++..+.|+.+
T Consensus        84 ~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~--n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~  149 (376)
T PRK14131         84 DGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKT--NSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVN  149 (376)
T ss_pred             CCEEEEEcCCCCCCCCCceeEcccEEEEeCCC--CEEEeCCCCCCCcccceEEEEeeCCEEEEECCCC
Confidence            55667777643           2466777766  5555543211111100111111356667777653

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=95.97  E-value=0.6  Score=36.89  Aligned_cols=151  Identities=11%  Similarity=0.107  Sum_probs=88.1

Q ss_pred             CCCeEEEEeCCccEEEEeeeCCCCCcee--eEEEeccCcceEEEEECC-----CCCeEEEeeCCCeEEEEEeecCCCc--
Q psy11529         66 NTNRIVTCSADRNAYVWTQNNDDKKWKP--TLVLLRINRAATCVKWSP-----LENKFAAGSGARLISVCYFESENDW--  136 (244)
Q Consensus        66 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~d~~i~i~d~~~~~~~--  136 (244)
                      +...++.|+.+|.++||+  ...+....  .+....-..+|..++.-+     +...||+ =.-..+.||.+......  
T Consensus        36 ~~d~IivGS~~G~LrIy~--P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~  112 (418)
T PF14727_consen   36 GSDKIIVGSYSGILRIYD--PSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVE  112 (418)
T ss_pred             CccEEEEeccccEEEEEc--cCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcc
Confidence            345899999999999999  54443222  222233456676666532     2234554 45677888888543321  


Q ss_pred             ----eEEE-eeecCCCCceeEEEecC----C-CCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCC
Q psy11529        137 ----WVAK-HIKKPIKSTITCLDWHP----N-NHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNS  206 (244)
Q Consensus       137 ----~~~~-~~~~~~~~~v~~~~~~p----~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (244)
                          .... ............++.-|    . ..+|.+-+.||.+.+|+-+                   ......+-..
T Consensus       113 ~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe-------------------~~~f~~~lp~  173 (418)
T PF14727_consen  113 HGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQE-------------------SFAFSRFLPD  173 (418)
T ss_pred             cCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCC-------------------cEEEEEEcCC
Confidence                1111 11111223444555544    2 2578888999999999952                   2121211111


Q ss_pred             CCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCC
Q psy11529        207 SSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQ  241 (244)
Q Consensus       207 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~  241 (244)
                         .--...+.|.+.-..+++++.+..+..|..+.
T Consensus       174 ---~llPgPl~Y~~~tDsfvt~sss~~l~~Yky~~  205 (418)
T PF14727_consen  174 ---FLLPGPLCYCPRTDSFVTASSSWTLECYKYQD  205 (418)
T ss_pred             ---CCCCcCeEEeecCCEEEEecCceeEEEecHHH
Confidence               22234567888888888888888888876543

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=95.95  E-value=0.52  Score=36.05  Aligned_cols=158  Identities=14%  Similarity=0.116  Sum_probs=86.3

Q ss_pred             CCceEEEEeCCCCCeEEEEeCCcc------EEEEeeeCCCCCce-----eeEEEeccCc--------ceEEEEECCCCCe
Q psy11529         55 DLKVTGIDWAPNTNRIVTCSADRN------AYVWTQNNDDKKWK-----PTLVLLRINR--------AATCVKWSPLENK  115 (244)
Q Consensus        55 ~~~v~~~~~~~~~~~l~~~~~d~~------i~iwd~~~~~~~~~-----~~~~~~~~~~--------~v~~~~~~~~~~~  115 (244)
                      -+.+..+.+.+++..+++.++++.      +...++....+...     ....+....+        ...++++.+++.+
T Consensus        19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~   98 (326)
T PF13449_consen   19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSF   98 (326)
T ss_pred             cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCE
Confidence            356788999976666777777777      66666433111110     1111111111        3447888777877


Q ss_pred             EEEeeCC------CeEEEEEeecCCCceEE---Ee--------eecCCCCceeEEEecCCCCEEEEeeCC-----C--e-
Q psy11529        116 FAAGSGA------RLISVCYFESENDWWVA---KH--------IKKPIKSTITCLDWHPNNHLLGCGSTD-----F--K-  170 (244)
Q Consensus       116 l~~~~~d------~~i~i~d~~~~~~~~~~---~~--------~~~~~~~~v~~~~~~p~~~~l~~~~~d-----g--~-  170 (244)
                      +++.-.+      ..|..++.+ +......   ..        .....+....+++++|+|+.|+++.+.     +  . 
T Consensus        99 ~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~  177 (326)
T PF13449_consen   99 WISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRAN  177 (326)
T ss_pred             EEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcccc
Confidence            7776666      677777755 3221111   11        112234678899999999966665432     2  1 


Q ss_pred             ------EEEEEeeecccccCCCCCCCCccccccceeEEecC-----CCCCCCCeEEEEEecCCCEEEE
Q psy11529        171 ------VRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNN-----SSSGGGWIHSVAFSKDGNKLCW  227 (244)
Q Consensus       171 ------i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~v~~~~~s~~~~~l~~  227 (244)
                            ++++.........           ...+....+..     .   ...++.+.+-+++++|+.
T Consensus       178 ~~~~~~~ri~~~d~~~~~~-----------~~~~~~y~ld~~~~~~~---~~~isd~~al~d~~lLvL  231 (326)
T PF13449_consen  178 PDNGSPLRILRYDPKTPGE-----------PVAEYAYPLDPPPTAPG---DNGISDIAALPDGRLLVL  231 (326)
T ss_pred             cccCceEEEEEecCCCCCc-----------cceEEEEeCCccccccC---CCCceeEEEECCCcEEEE
Confidence                  4555442110000           01222333321     2   577899999999997764

>KOG2247|consensus

Probab=95.94  E-value=0.0011  Score=51.45  Aligned_cols=142  Identities=13%  Similarity=0.160  Sum_probs=93.1

Q ss_pred             eEEEEeCCCCCeEEEEeCCccEEEEeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEE-eeCCCeEEEEEeecCCCc
Q psy11529         58 VTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAA-GSGARLISVCYFESENDW  136 (244)
Q Consensus        58 v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d~~i~i~d~~~~~~~  136 (244)
                      .....|-|++.-++.++.+..+..||   +.++..  . ....++....++|..++..++. +...+.+.+||+.+... 
T Consensus        37 pi~~~w~~e~~nlavaca~tiv~~YD---~agq~~--l-e~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eyt-  109 (615)
T KOG2247|consen   37 PIIHRWRPEGHNLAVACANTIVIYYD---KAGQVI--L-ELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYT-  109 (615)
T ss_pred             cceeeEecCCCceehhhhhhHHHhhh---hhccee--c-ccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhH-
Confidence            34566888777788888898999999   344321  1 1234566778889888766554 55688999999988753 


Q ss_pred             eEEEeeecCCCCceeEEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEE
Q psy11529        137 WVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSV  216 (244)
Q Consensus       137 ~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  216 (244)
                         .....+....-.-+.|++....++.+...|.+.|++..                  +.+.+...-.|   ...++++
T Consensus       110 ---qqLE~gg~~s~sll~wsKg~~el~ig~~~gn~viynhg------------------tsR~iiv~Gkh---~RRgtq~  165 (615)
T KOG2247|consen  110 ---QQLESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHG------------------TSRRIIVMGKH---QRRGTQI  165 (615)
T ss_pred             ---HHHhccCcchHHHHhhccCCccccccccccceEEEecc------------------chhhhhhhccc---ccceeEE
Confidence               22222222222337899988899999999999999973                  23332222224   6778888


Q ss_pred             EEecCCCEEEEeeCC
Q psy11529        217 AFSKDGNKLCWTSHD  231 (244)
Q Consensus       217 ~~s~~~~~l~~~~~d  231 (244)
                      ++.+.+..+ .++.|
T Consensus       166 av~lEd~vi-l~dcd  179 (615)
T KOG2247|consen  166 AVTLEDYVI-LCDCD  179 (615)
T ss_pred             Eecccceee-ecCcH
Confidence            888876543 34334

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=95.93  E-value=0.12  Score=40.45  Aligned_cols=163  Identities=12%  Similarity=-0.002  Sum_probs=87.7

Q ss_pred             CCceEEEEeCCCCCeEEEEeCCccEEEEeeeCCCCCceeeEEEeccCc----ceE-EEEECCCCCeEEEeeCCCeEEEE-
Q psy11529         55 DLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRINR----AAT-CVKWSPLENKFAAGSGARLISVC-  128 (244)
Q Consensus        55 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~----~v~-~~~~~~~~~~l~~~~~d~~i~i~-  128 (244)
                      ...|..+-..|||+.+..-+. .++.++++  .+............++    .|. .+..-..|..+.+++.||.|.-| 
T Consensus       220 ~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L--~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWF  296 (733)
T COG4590         220 FSDVSQLLLTPDGKTLYVRTG-SELVVALL--DKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWF  296 (733)
T ss_pred             ccchHhhEECCCCCEEEEecC-CeEEEEee--cccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeee
Confidence            456677788999998876654 67888884  3333221111111111    122 12223346678888888887765 


Q ss_pred             EeecCCCceEEEe--eecCCCCceeEEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCC
Q psy11529        129 YFESENDWWVAKH--IKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNS  206 (244)
Q Consensus       129 d~~~~~~~~~~~~--~~~~~~~~v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (244)
                      |.+.+.. .....  .+.-....+..+.-..+.+-+++-...|++.++..                   +.+..-.+..-
T Consensus       297 dvr~~~~-p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~s-------------------t~~~~lL~~~~  356 (733)
T COG4590         297 DVRRDGQ-PHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYS-------------------TSEKLLLFERA  356 (733)
T ss_pred             eeecCCC-CcceeeeccccCcccceeeccccccceEEEEcCCCceeeeec-------------------ccCcceehhhh
Confidence            4443322 00000  00101122222222223345666677777777764                   22222212211


Q ss_pred             CCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCCCCC
Q psy11529        207 SSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQVLP  244 (244)
Q Consensus       207 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~p  244 (244)
                         -..+.-+++||.+.+|++- ..|.++++.+++-.|
T Consensus       357 ---~~~~~~~~~Sp~~~~Ll~e-~~gki~~~~l~Nr~P  390 (733)
T COG4590         357 ---YQAPQLVAMSPNQAYLLSE-DQGKIRLAQLENRNP  390 (733)
T ss_pred             ---hcCcceeeeCcccchheee-cCCceEEEEecCCCC
Confidence               3356778999999998865 567899999988665

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=95.91  E-value=0.64  Score=36.74  Aligned_cols=149  Identities=11%  Similarity=0.050  Sum_probs=88.4

Q ss_pred             CCeEEEecCCCeEEEeeeccCCCccee--eeeeccCCCceEEEEeCC-----CCCeEEEEeCCccEEEEeeeCCCCC---
Q psy11529         21 RQQLAFTPNNQEVHLYQYEKAANDWSQ--LDVLDGHDLKVTGIDWAP-----NTNRIVTCSADRNAYVWTQNNDDKK---   90 (244)
Q Consensus        21 ~~~l~~~~~d~~v~v~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~d~~i~iwd~~~~~~~---   90 (244)
                      ...|++|+..|.++||+...  +..+.  +..-..-+.+|..+...+     +...||. -.-..+.+|.+....+.   
T Consensus        37 ~d~IivGS~~G~LrIy~P~~--~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~  113 (418)
T PF14727_consen   37 SDKIIVGSYSGILRIYDPSG--NEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEH  113 (418)
T ss_pred             ccEEEEeccccEEEEEccCC--CCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCccc
Confidence            35899999999999999865  22221  111222467888887543     2234444 45778899986333332   


Q ss_pred             --ceeeEEEecc--CcceEEEEECC----C-CCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCE
Q psy11529         91 --WKPTLVLLRI--NRAATCVKWSP----L-ENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHL  161 (244)
Q Consensus        91 --~~~~~~~~~~--~~~v~~~~~~~----~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~  161 (244)
                        .........|  ......+..-|    . ...+.+-+.||.+.+|+-+.-.     .....+.---...++|.|....
T Consensus       114 g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~-----f~~~lp~~llPgPl~Y~~~tDs  188 (418)
T PF14727_consen  114 GNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFA-----FSRFLPDFLLPGPLCYCPRTDS  188 (418)
T ss_pred             CcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEE-----EEEEcCCCCCCcCeEEeecCCE
Confidence              1111112222  22333333333    2 2567778899999998765542     1222222223345788888888


Q ss_pred             EEEeeCCCeEEEEEee
Q psy11529        162 LGCGSTDFKVRVFSAY  177 (244)
Q Consensus       162 l~~~~~dg~i~i~d~~  177 (244)
                      +++++.+..+.-|...
T Consensus       189 fvt~sss~~l~~Yky~  204 (418)
T PF14727_consen  189 FVTASSSWTLECYKYQ  204 (418)
T ss_pred             EEEecCceeEEEecHH
Confidence            9999888888888763

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=95.83  E-value=0.75  Score=36.89  Aligned_cols=145  Identities=12%  Similarity=0.104  Sum_probs=75.7

Q ss_pred             CCCeEEE-EeCCccEEEEeeeCCCCCceeeEEEeccCcceEEEEECCCC-------CeEEEeeCCCeEEEEEeecCCCce
Q psy11529         66 NTNRIVT-CSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLE-------NKFAAGSGARLISVCYFESENDWW  137 (244)
Q Consensus        66 ~~~~l~~-~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-------~~l~~~~~d~~i~i~d~~~~~~~~  137 (244)
                      +.++|+. ++....++-.|  ++.|+.+-....   ...+ -+.|.|..       ..-++|-.+..|.-.|.+......
T Consensus       478 dssli~~dg~~~~kLykmD--IErGkvveeW~~---~ddv-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi  551 (776)
T COG5167         478 DSSLIYLDGGERDKLYKMD--IERGKVVEEWDL---KDDV-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKI  551 (776)
T ss_pred             CcceEEecCCCcccceeee--cccceeeeEeec---CCcc-eeecCCchhHHhcCccceEEeecccceEEecccccCCce
Confidence            4444443 33344454445  677764443332   2233 56777752       122333344444444554443211


Q ss_pred             EEEeeec-CCCCceeEEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCcccccccee-EEecCCCCCCCCeEE
Q psy11529        138 VAKHIKK-PIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCL-VELNNSSSGGGWIHS  215 (244)
Q Consensus       138 ~~~~~~~-~~~~~v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~  215 (244)
                      ....... .......+..-. ...++|.++..|-|++||-                   .+... ..+++-   +..|..
T Consensus       552 ~v~esKdY~tKn~Fss~~tT-esGyIa~as~kGDirLyDR-------------------ig~rAKtalP~l---G~aIk~  608 (776)
T COG5167         552 KVVESKDYKTKNKFSSGMTT-ESGYIAAASRKGDIRLYDR-------------------IGKRAKTALPGL---GDAIKH  608 (776)
T ss_pred             eeeeehhccccccccccccc-cCceEEEecCCCceeeehh-------------------hcchhhhcCccc---ccceee
Confidence            1111110 111222222222 3449999999999999994                   33322 223443   778999


Q ss_pred             EEEecCCCEEEEeeCCCcEEEEeCC
Q psy11529        216 VAFSKDGNKLCWTSHDGSINVRMSQ  240 (244)
Q Consensus       216 ~~~s~~~~~l~~~~~dg~i~vwd~~  240 (244)
                      +..+.+|+++++.+. ..+.+-|++
T Consensus       609 idvta~Gk~ilaTCk-~yllL~d~~  632 (776)
T COG5167         609 IDVTANGKHILATCK-NYLLLTDVP  632 (776)
T ss_pred             eEeecCCcEEEEeec-ceEEEEecc
Confidence            999999998776653 466666654

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=95.79  E-value=0.76  Score=36.73  Aligned_cols=57  Identities=12%  Similarity=0.134  Sum_probs=37.7

Q ss_pred             CCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeec-----cCCCceEEEEeCCCC
Q psy11529          9 INPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLD-----GHDLKVTGIDWAPNT   67 (244)
Q Consensus         9 ~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~   67 (244)
                      -..-..|+|.|||++|++--..|.|++++..+  .....+..+.     ........|+++|+-
T Consensus        29 L~~Pw~maflPDG~llVtER~~G~I~~v~~~~--~~~~~~~~l~~v~~~~ge~GLlglal~PdF   90 (454)
T TIGR03606        29 LNKPWALLWGPDNQLWVTERATGKILRVNPET--GEVKVVFTLPEIVNDAQHNGLLGLALHPDF   90 (454)
T ss_pred             CCCceEEEEcCCCeEEEEEecCCEEEEEeCCC--CceeeeecCCceeccCCCCceeeEEECCCc
Confidence            45667899999998887764469999987544  2112222111     135778999999874

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>PHA02790 Kelch-like protein; Provisional

Probab=95.75  E-value=0.62  Score=37.80  Aligned_cols=142  Identities=11%  Similarity=0.052  Sum_probs=70.0

Q ss_pred             CCCeEEEecCC--CeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCC---ccEEEEeeeCCCCCceee
Q psy11529         20 TRQQLAFTPNN--QEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSAD---RNAYVWTQNNDDKKWKPT   94 (244)
Q Consensus        20 ~~~~l~~~~~d--~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~   94 (244)
                      ++...+.|+.+  ..+..|+...  +.|.....+.........+..  +|+..+.|+.+   ..+..||  ..++++...
T Consensus       318 ~~~iYviGG~~~~~sve~ydp~~--n~W~~~~~l~~~r~~~~~~~~--~g~IYviGG~~~~~~~ve~yd--p~~~~W~~~  391 (480)
T PHA02790        318 NNKLYVVGGLPNPTSVERWFHGD--AAWVNMPSLLKPRCNPAVASI--NNVIYVIGGHSETDTTTEYLL--PNHDQWQFG  391 (480)
T ss_pred             CCEEEEECCcCCCCceEEEECCC--CeEEECCCCCCCCcccEEEEE--CCEEEEecCcCCCCccEEEEe--CCCCEEEeC
Confidence            56666777653  3567777665  555555444322212222222  46777777654   3467888  677665433


Q ss_pred             EEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEeeCC-----C
Q psy11529         95 LVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTD-----F  169 (244)
Q Consensus        95 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d-----g  169 (244)
                      ..+.........+.+  +++..+.|+   .+.+||.++++  |...............+.  -++++.+.|+.+     .
T Consensus       392 ~~m~~~r~~~~~~~~--~~~IYv~GG---~~e~ydp~~~~--W~~~~~m~~~r~~~~~~v--~~~~IYviGG~~~~~~~~  462 (480)
T PHA02790        392 PSTYYPHYKSCALVF--GRRLFLVGR---NAEFYCESSNT--WTLIDDPIYPRDNPELII--VDNKLLLIGGFYRGSYID  462 (480)
T ss_pred             CCCCCccccceEEEE--CCEEEEECC---ceEEecCCCCc--EeEcCCCCCCccccEEEE--ECCEEEEECCcCCCcccc
Confidence            221111111222222  455555553   46778876542  433222221112222222  256777777754     3


Q ss_pred             eEEEEEe
Q psy11529        170 KVRVFSA  176 (244)
Q Consensus       170 ~i~i~d~  176 (244)
                      .+..||.
T Consensus       463 ~ve~Yd~  469 (480)
T PHA02790        463 TIEVYNN  469 (480)
T ss_pred             eEEEEEC
Confidence            4667775

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=95.69  E-value=0.17  Score=36.23  Aligned_cols=76  Identities=16%  Similarity=0.073  Sum_probs=47.7

Q ss_pred             ecCCCCEEEEeeCCCeEEEEEeeecccccCCCCC-C-CCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCC
Q psy11529        155 WHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQST-N-WGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDG  232 (244)
Q Consensus       155 ~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg  232 (244)
                      +..+++++++-+.+|.+++||+........+... . .........      ..   ...|..+.++.+|.-|++-+ +|
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~------~~---~~~i~~~~lt~~G~PiV~ls-ng   87 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDK------SS---SPNITSCSLTSNGVPIVTLS-NG   87 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccC------CC---CCcEEEEEEcCCCCEEEEEe-CC
Confidence            4456888999999999999999655443222000 0 000000000      22   67789999998998777665 57


Q ss_pred             cEEEEeCC
Q psy11529        233 SINVRMSQ  240 (244)
Q Consensus       233 ~i~vwd~~  240 (244)
                      ..+.|+.+
T Consensus        88 ~~y~y~~~   95 (219)
T PF07569_consen   88 DSYSYSPD   95 (219)
T ss_pred             CEEEeccc
Confidence            88888765

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>KOG4460|consensus

Probab=95.65  E-value=0.72  Score=37.06  Aligned_cols=26  Identities=19%  Similarity=0.015  Sum_probs=21.1

Q ss_pred             ceEEEEECCCCCeEEEeeCCCeEEEE
Q psy11529        103 AATCVKWSPLENKFAAGSGARLISVC  128 (244)
Q Consensus       103 ~v~~~~~~~~~~~l~~~~~d~~i~i~  128 (244)
                      .|..+..++.|..++.++.+|.+.++
T Consensus       105 eV~~vl~s~~GS~VaL~G~~Gi~vMe  130 (741)
T KOG4460|consen  105 EVYQVLLSPTGSHVALIGIKGLMVME  130 (741)
T ss_pred             EEEEEEecCCCceEEEecCCeeEEEE
Confidence            56778889999999999999966554

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=95.61  E-value=0.72  Score=35.11  Aligned_cols=161  Identities=11%  Similarity=0.072  Sum_probs=84.0

Q ss_pred             CeEEEecCCCeEEEeeeccCCCcceeeee-eccCCCc-eEEEEeCCCCCeEEEEeCCccEEEEeeeCCCCCceeeEEEec
Q psy11529         22 QQLAFTPNNQEVHLYQYEKAANDWSQLDV-LDGHDLK-VTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLR   99 (244)
Q Consensus        22 ~~l~~~~~d~~v~v~~~~~~~~~~~~~~~-~~~~~~~-v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~   99 (244)
                      +.|.+-+.||.+.-..+...++....... +..-..+ ...-++...+..++..+.+|.|+--|  +............-
T Consensus       148 ~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~d--lsg~~~~~~~~~~~  225 (342)
T PF06433_consen  148 RGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSAD--LSGDSAKFGKPWSL  225 (342)
T ss_dssp             TEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEE--ETTSSEEEEEEEES
T ss_pred             CceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEe--ccCCcccccCcccc
Confidence            34556667899999998753321111111 1111222 22334444555555577899998888  44444222221110


Q ss_pred             ----------cCcceEEEEECCCCCeEEEeeC--------CCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCC-
Q psy11529        100 ----------INRAATCVKWSPLENKFAAGSG--------ARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNH-  160 (244)
Q Consensus       100 ----------~~~~v~~~~~~~~~~~l~~~~~--------d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~-  160 (244)
                                .++.-.-+++++..+.|++.-.        |+.-.||-++........+..   ....+.++..+.+.+ 
T Consensus       226 ~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~---l~~~~~Si~Vsqd~~P  302 (342)
T PF06433_consen  226 LTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIP---LEHPIDSIAVSQDDKP  302 (342)
T ss_dssp             S-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEE---EEEEESEEEEESSSS-
T ss_pred             cCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEe---CCCccceEEEccCCCc
Confidence                      0123445788876666555322        333445555554442222222   234678999998776 


Q ss_pred             EEEEe-eCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecC
Q psy11529        161 LLGCG-STDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNN  205 (244)
Q Consensus       161 ~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (244)
                      +|++. ..++.+.+||.                  .+++.+.++..
T Consensus       303 ~L~~~~~~~~~l~v~D~------------------~tGk~~~~~~~  330 (342)
T PF06433_consen  303 LLYALSAGDGTLDVYDA------------------ATGKLVRSIEQ  330 (342)
T ss_dssp             EEEEEETTTTEEEEEET------------------TT--EEEEE--
T ss_pred             EEEEEcCCCCeEEEEeC------------------cCCcEEeehhc
Confidence            55544 45799999999                  67888777765

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=95.58  E-value=0.23  Score=38.96  Aligned_cols=161  Identities=12%  Similarity=0.040  Sum_probs=90.6

Q ss_pred             CCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCC----ceE-EEEeCCCCCeEEEEeCCccEEEE-
Q psy11529          9 INPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDL----KVT-GIDWAPNTNRIVTCSADRNAYVW-   82 (244)
Q Consensus         9 ~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~----~v~-~~~~~~~~~~l~~~~~d~~i~iw-   82 (244)
                      ...|..+-..|||+.+..-+. .++.|+++.+  ..++..+......+    .|+ ++..-.-|..+..++.||-|.-| 
T Consensus       220 ~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~--r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWF  296 (733)
T COG4590         220 FSDVSQLLLTPDGKTLYVRTG-SELVVALLDK--RSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWF  296 (733)
T ss_pred             ccchHhhEECCCCCEEEEecC-CeEEEEeecc--cccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeee
Confidence            466778889999998877654 7899999876  32222222221122    122 11122245567788889988877 


Q ss_pred             eeeCCCCCceeeE--EEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCC
Q psy11529         83 TQNNDDKKWKPTL--VLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNH  160 (244)
Q Consensus        83 d~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~  160 (244)
                      |+ .+++......  ...-....+..+.-..+.+-+++-+..|++..+.-...+.     ......-..+.-++++|.+.
T Consensus       297 dv-r~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~-----lL~~~~~~~~~~~~~Sp~~~  370 (733)
T COG4590         297 DV-RRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKL-----LLFERAYQAPQLVAMSPNQA  370 (733)
T ss_pred             ee-ecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcc-----eehhhhhcCcceeeeCcccc
Confidence            43 2333211111  1111122333333233345577777888888765443332     22222234667899999999


Q ss_pred             EEEEeeCCCeEEEEEeeec
Q psy11529        161 LLGCGSTDFKVRVFSAYIK  179 (244)
Q Consensus       161 ~l~~~~~dg~i~i~d~~~~  179 (244)
                      ++++- +.|.|+++.+.+.
T Consensus       371 ~Ll~e-~~gki~~~~l~Nr  388 (733)
T COG4590         371 YLLSE-DQGKIRLAQLENR  388 (733)
T ss_pred             hheee-cCCceEEEEecCC
Confidence            88774 5678999988543

>PLN02153 epithiospecifier protein

Probab=95.56  E-value=0.8  Score=35.30  Aligned_cols=69  Identities=19%  Similarity=0.316  Sum_probs=36.1

Q ss_pred             CCCeEEEecCC-----CeEEEeeeccCCCcceeeeeecc---CCCc-eEEEEeCCCCCeEEEEeCC-----------ccE
Q psy11529         20 TRQQLAFTPNN-----QEVHLYQYEKAANDWSQLDVLDG---HDLK-VTGIDWAPNTNRIVTCSAD-----------RNA   79 (244)
Q Consensus        20 ~~~~l~~~~~d-----~~v~v~~~~~~~~~~~~~~~~~~---~~~~-v~~~~~~~~~~~l~~~~~d-----------~~i   79 (244)
                      ++++++.|+.+     ..+.+||..+  ..|..+..+..   .... -.+++. -+++.++.|+.+           ..+
T Consensus        85 ~~~iyv~GG~~~~~~~~~v~~yd~~t--~~W~~~~~~~~~~~p~~R~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~v  161 (341)
T PLN02153         85 GTKLYIFGGRDEKREFSDFYSYDTVK--NEWTFLTKLDEEGGPEARTFHSMAS-DENHVYVFGGVSKGGLMKTPERFRTI  161 (341)
T ss_pred             CCEEEEECCCCCCCccCcEEEEECCC--CEEEEeccCCCCCCCCCceeeEEEE-ECCEEEEECCccCCCccCCCcccceE
Confidence            45666777643     3577888876  55655443311   1111 112222 245566666643           246


Q ss_pred             EEEeeeCCCCCcee
Q psy11529         80 YVWTQNNDDKKWKP   93 (244)
Q Consensus        80 ~iwd~~~~~~~~~~   93 (244)
                      .+||  ..+.++..
T Consensus       162 ~~yd--~~~~~W~~  173 (341)
T PLN02153        162 EAYN--IADGKWVQ  173 (341)
T ss_pred             EEEE--CCCCeEee
Confidence            7788  66666543

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=95.53  E-value=0.98  Score=36.15  Aligned_cols=112  Identities=11%  Similarity=-0.001  Sum_probs=60.4

Q ss_pred             CCceEEEEeCCCCCeEEEEeCCccEEEEeeeCCCCCceeeEEEe-----ccCcceEEEEECCCC------CeEEEee---
Q psy11529         55 DLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLL-----RINRAATCVKWSPLE------NKFAAGS---  120 (244)
Q Consensus        55 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~------~~l~~~~---  120 (244)
                      -..-+.++|.|+++.|++--..|+|++++  ..++.......+.     ........|+++|+-      .+|++..   
T Consensus        29 L~~Pw~maflPDG~llVtER~~G~I~~v~--~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~  106 (454)
T TIGR03606        29 LNKPWALLWGPDNQLWVTERATGKILRVN--PETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYK  106 (454)
T ss_pred             CCCceEEEEcCCCeEEEEEecCCEEEEEe--CCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEecc
Confidence            34557899999998777654469999987  4444322111111     135678899999873      2344432   


Q ss_pred             -------CCCeEEEEEeecCC-CceEEEeeecC----CCCceeEEEecCCCCEEEEeeCC
Q psy11529        121 -------GARLISVCYFESEN-DWWVAKHIKKP----IKSTITCLDWHPNNHLLGCGSTD  168 (244)
Q Consensus       121 -------~d~~i~i~d~~~~~-~~~~~~~~~~~----~~~~v~~~~~~p~~~~l~~~~~d  168 (244)
                             ....|.-|.+.... ...........    ....-..+.|.|||.++++.++.
T Consensus       107 ~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~  166 (454)
T TIGR03606       107 NGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQ  166 (454)
T ss_pred             CCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCC
Confidence                   12334445443211 10001111111    11234578899999866655443

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=95.51  E-value=0.73  Score=34.54  Aligned_cols=154  Identities=10%  Similarity=0.080  Sum_probs=80.1

Q ss_pred             cEEEEeeeCCCCCceeeEEEec----cCcceEEEEECCCC-----CeEEEee-CCCeEEEEEeecCCCceEEEeeecCC-
Q psy11529         78 NAYVWTQNNDDKKWKPTLVLLR----INRAATCVKWSPLE-----NKFAAGS-GARLISVCYFESENDWWVAKHIKKPI-  146 (244)
Q Consensus        78 ~i~iwd~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~-----~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~-  146 (244)
                      +|.+||  +.+++......+..    ..+.+..+.+....     .+++.+. ..+.|.|+|+.+++............ 
T Consensus        35 KLv~~D--l~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p  112 (287)
T PF03022_consen   35 KLVAFD--LKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDP  112 (287)
T ss_dssp             EEEEEE--TTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-
T ss_pred             EEEEEE--CCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceec
Confidence            566777  66776555555443    24556777776522     2333322 24578899988876422221111111 


Q ss_pred             --------------CCceeEEEecC---CCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCC
Q psy11529        147 --------------KSTITCLDWHP---NNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSG  209 (244)
Q Consensus       147 --------------~~~v~~~~~~p---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (244)
                                    ...+..++.+|   +++.|+.....+ -++|.+.+..+.........    ...+.+..+-..   
T Consensus       113 ~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T~~L~~~~~~~~~----~~~~~v~~lG~k---  184 (287)
T PF03022_consen  113 DAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPTSVLRDPSLSDAQ----ALASQVQDLGDK---  184 (287)
T ss_dssp             SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEHHHHCSTT--HHH-----HHHT-EEEEE----
T ss_pred             cccceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-CcEEEEEHHHhhCccccccc----cccccceecccc---
Confidence                          23466677766   667777666544 25566654433322111100    001112222110   


Q ss_pred             CCCeEEEEEecCCCEEEEeeCCCcEEEEeCCC
Q psy11529        210 GGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQ  241 (244)
Q Consensus       210 ~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~  241 (244)
                      ......++.+++|.++++--..+.|..|+.++
T Consensus       185 ~~~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~  216 (287)
T PF03022_consen  185 GSQSDGMAIDPNGNLYFTDVEQNAIGCWDPDG  216 (287)
T ss_dssp             --SECEEEEETTTEEEEEECCCTEEEEEETTT
T ss_pred             CCCCceEEECCCCcEEEecCCCCeEEEEeCCC
Confidence            23566788999999888888899999999875

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=95.46  E-value=0.39  Score=31.05  Aligned_cols=115  Identities=9%  Similarity=0.136  Sum_probs=68.3

Q ss_pred             EEEEcCCCCeEEEecCCCeEEEeeeccCCC----cceeeeeeccCCCceEEEEe---CC--CCCeEEEEeCCccEEEEee
Q psy11529         14 THAWNNTRQQLAFTPNNQEVHLYQYEKAAN----DWSQLDVLDGHDLKVTGIDW---AP--NTNRIVTCSADRNAYVWTQ   84 (244)
Q Consensus        14 ~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~----~~~~~~~~~~~~~~v~~~~~---~~--~~~~l~~~~~d~~i~iwd~   84 (244)
                      .-.|......|+.++..|+|.|++......    .-..+..+. -...|++++-   .|  +...|+.|+ ...+..|| 
T Consensus         3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt-~t~llaYD-   79 (136)
T PF14781_consen    3 IGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYD-   79 (136)
T ss_pred             EEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEec-cceEEEEE-
Confidence            345666666788888889999998754110    012333343 4567777754   33  344666665 56899999 


Q ss_pred             eCCCCCceeeEEEeccCcceEEEEEC---CCCCeEEEeeCCCeEEEEEeecCCC
Q psy11529         85 NNDDKKWKPTLVLLRINRAATCVKWS---PLENKFAAGSGARLISVCYFESEND  135 (244)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~l~~~~~d~~i~i~d~~~~~~  135 (244)
                       +....-.   .....+..++++.+-   ....-++..+.+..|.-||.+..+.
T Consensus        80 -V~~N~d~---Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~  129 (136)
T PF14781_consen   80 -VENNSDL---FYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEI  129 (136)
T ss_pred             -cccCchh---hhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEE
Confidence             5554422   223345667777663   2233466666677777777666554

>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins

Probab=95.45  E-value=1  Score=35.88  Aligned_cols=30  Identities=20%  Similarity=0.217  Sum_probs=24.8

Q ss_pred             CceeEEEecCCCCEEEEeeCCCeEEEEEee
Q psy11529        148 STITCLDWHPNNHLLGCGSTDFKVRVFSAY  177 (244)
Q Consensus       148 ~~v~~~~~~p~~~~l~~~~~dg~i~i~d~~  177 (244)
                      ..+..++..+..+.+++.+.+|.|.+|++.
T Consensus       190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~  219 (422)
T PF08801_consen  190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLG  219 (422)
T ss_dssp             --EEEEEEETTTTEEEEEESSE-EEEEEE-
T ss_pred             hceeeEEecCCcCEEEEEeCCCcEEEEEEe
Confidence            348999999988999999999999999995

RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.

>KOG1900|consensus

Probab=95.42  E-value=0.73  Score=41.04  Aligned_cols=145  Identities=13%  Similarity=0.233  Sum_probs=86.8

Q ss_pred             CCCeEEEeeeccCCCcceeeeeeccCCCceEEEEe--------CCCCCeEEEEeCCccEEEEeeeCCCCCc-----eeeE
Q psy11529         29 NNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDW--------APNTNRIVTCSADRNAYVWTQNNDDKKW-----KPTL   95 (244)
Q Consensus        29 ~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~--------~~~~~~l~~~~~d~~i~iwd~~~~~~~~-----~~~~   95 (244)
                      -|+.+.+|+.++  +  .....+.+-...|..+..        -|.=++++..+.--.|.++-+.......     ...+
T Consensus        97 iDn~L~lWny~~--~--~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~  172 (1311)
T KOG1900|consen   97 IDNNLFLWNYES--D--NELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSF  172 (1311)
T ss_pred             eCCeEEEEEcCC--C--CccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccce
Confidence            478999999987  3  455566665666665543        2333444444445567776542222111     1112


Q ss_pred             EEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEE-------------------EeeecCCCCceeEEEec
Q psy11529         96 VLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVA-------------------KHIKKPIKSTITCLDWH  156 (244)
Q Consensus        96 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~-------------------~~~~~~~~~~v~~~~~~  156 (244)
                      .+.-....|+++....+|+.+++|-.+ .+.=.-+.....++..                   ......+..+|..+...
T Consensus       173 ~i~~dg~~V~~I~~t~nGRIF~~G~dg-~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID  251 (1311)
T KOG1900|consen  173 KISVDGVSVNCITYTENGRIFFAGRDG-NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITID  251 (1311)
T ss_pred             eeecCCceEEEEEeccCCcEEEeecCC-CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEec
Confidence            233345678999988888877776554 3433333333321111                   11112345789999999


Q ss_pred             CCCCEEEEeeCCCeEEEEEeee
Q psy11529        157 PNNHLLGCGSTDFKVRVFSAYI  178 (244)
Q Consensus       157 p~~~~l~~~~~dg~i~i~d~~~  178 (244)
                      ...+.+.+-++.|+|.+||+..
T Consensus       252 ~SR~IlY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  252 NSRNILYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             cccceeeeeccCceEEEEEccC
Confidence            8888999999999999999954

>KOG1897|consensus

Probab=95.40  E-value=1.6  Score=37.86  Aligned_cols=163  Identities=9%  Similarity=0.034  Sum_probs=88.2

Q ss_pred             CCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCC--C----CeEEEEeCCccEEEE
Q psy11529          9 INPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPN--T----NRIVTCSADRNAYVW   82 (244)
Q Consensus         9 ~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~----~~l~~~~~d~~i~iw   82 (244)
                      .+.++....+.+...++.++.++.+...++..  ..++... -+..+..|.|+.++|-  +    +.++.|..+..+.+.
T Consensus       487 p~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~--~~l~e~~-~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l  563 (1096)
T KOG1897|consen  487 PGKITIGVVSANASQVVVAGGGLALFYLEIED--GGLREVS-HKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMIL  563 (1096)
T ss_pred             CCceEEEEEeecceEEEEecCccEEEEEEeec--cceeeee-eheecceeEEEecccCCCCCCcceEEEEEeecceEEEE
Confidence            34455555555666777777667777777765  3111111 1223678999999983  2    267778776666554


Q ss_pred             eeeCCCCCceeeEEEe--ccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCC
Q psy11529         83 TQNNDDKKWKPTLVLL--RINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNH  160 (244)
Q Consensus        83 d~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~  160 (244)
                      -. ..+........+.  --+..+.-..+-.+..+|.++..||.+..|.++..+....-.+...-...++.=-.|+..++
T Consensus       564 ~~-~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~  642 (1096)
T KOG1897|consen  564 TF-LPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSR  642 (1096)
T ss_pred             EE-CCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCc
Confidence            42 3333322222111  12344555556666789999999999998887766541111111111123444455555444


Q ss_pred             EEEEeeCCCeEEEEE
Q psy11529        161 LLGCGSTDFKVRVFS  175 (244)
Q Consensus       161 ~l~~~~~dg~i~i~d  175 (244)
                      .-+.+..|.-..+|.
T Consensus       643 t~vfa~sdrP~viY~  657 (1096)
T KOG1897|consen  643 TAVFALSDRPTVIYS  657 (1096)
T ss_pred             eEEEEeCCCCEEEEe
Confidence            333334455445554

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=95.37  E-value=0.24  Score=34.02  Aligned_cols=27  Identities=11%  Similarity=0.373  Sum_probs=22.4

Q ss_pred             ceEEEEeCCCC------CeEEEEeCCccEEEEe
Q psy11529         57 KVTGIDWAPNT------NRIVTCSADRNAYVWT   83 (244)
Q Consensus        57 ~v~~~~~~~~~------~~l~~~~~d~~i~iwd   83 (244)
                      .+.+++|||.|      -.|++.+.++.+.||.
T Consensus        87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~  119 (173)
T PF12657_consen   87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYG  119 (173)
T ss_pred             cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEe
Confidence            78899999943      3577888899999998

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=95.07  E-value=1.1  Score=34.17  Aligned_cols=65  Identities=9%  Similarity=0.083  Sum_probs=33.1

Q ss_pred             CCCeEEEEeC-----CccEEEEeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCe----EEEEEeecC
Q psy11529         66 NTNRIVTCSA-----DRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARL----ISVCYFESE  133 (244)
Q Consensus        66 ~~~~l~~~~~-----d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~----i~i~d~~~~  133 (244)
                      +++..+.|+.     ...+..||  ..+.++.....+... ......+..-+++.++.|+.++.    +.+||.++.
T Consensus       123 ~~~iYv~GG~~~~~~~~~v~~yd--~~~~~W~~~~~~p~~-~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~  196 (323)
T TIGR03548       123 DGTLYVGGGNRNGKPSNKSYLFN--LETQEWFELPDFPGE-PRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKN  196 (323)
T ss_pred             CCEEEEEeCcCCCccCceEEEEc--CCCCCeeECCCCCCC-CCCcceEEEECCEEEEEcCCCCccccceEEEecCCC
Confidence            4556666654     24577888  677766543322211 11122222235667777766532    446666654

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>KOG1916|consensus

Probab=95.06  E-value=0.035  Score=46.86  Aligned_cols=68  Identities=12%  Similarity=0.264  Sum_probs=49.7

Q ss_pred             EEEEEcC---CCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEE-----------eCCCCCeEEEEeCCcc
Q psy11529         13 TTHAWNN---TRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGID-----------WAPNTNRIVTCSADRN   78 (244)
Q Consensus        13 ~~~~~~~---~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~-----------~~~~~~~l~~~~~d~~   78 (244)
                      .-+.|.|   +..++..+..++.+++.+.+.     .....+.+|...+..++           .||||..++.++.||.
T Consensus       184 ~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~r-----a~~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~  258 (1283)
T KOG1916|consen  184 QLVSWCPIAVNKVYICYGLKGGEIRLLNINR-----ALRSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGS  258 (1283)
T ss_pred             ceeeecccccccceeeeccCCCceeEeeech-----HHHHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCc
Confidence            4444544   566777888889999988876     33355566766555443           5899999999999999


Q ss_pred             EEEEeee
Q psy11529         79 AYVWTQN   85 (244)
Q Consensus        79 i~iwd~~   85 (244)
                      ++.|.+.
T Consensus       259 v~f~Qiy  265 (1283)
T KOG1916|consen  259 VGFYQIY  265 (1283)
T ss_pred             cceeeee
Confidence            9999874

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=95.01  E-value=0.47  Score=33.98  Aligned_cols=62  Identities=16%  Similarity=0.214  Sum_probs=44.5

Q ss_pred             EcCCCCeEEEecCCCeEEEeeeccCCCcceeeee-------ec-------cCCCceEEEEeCCCCCeEEEEeCCccEEEE
Q psy11529         17 WNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDV-------LD-------GHDLKVTGIDWAPNTNRIVTCSADRNAYVW   82 (244)
Q Consensus        17 ~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~-------~~-------~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw   82 (244)
                      +..+++++++-+.+|.+++||+..  .  +.+..       +.       .....|..+.++.+|.-+++-+ +|..+.|
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~--~--k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y   92 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKK--G--KAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSY   92 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCC--C--eeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEe
Confidence            445778888888999999999977  3  11111       11       3456788888888888777665 5778888


Q ss_pred             e
Q psy11529         83 T   83 (244)
Q Consensus        83 d   83 (244)
                      +
T Consensus        93 ~   93 (219)
T PF07569_consen   93 S   93 (219)
T ss_pred             c
Confidence            8

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=94.84  E-value=0.7  Score=31.69  Aligned_cols=30  Identities=20%  Similarity=0.255  Sum_probs=24.9

Q ss_pred             CCeEEEEEecCC------CEEEEeeCCCcEEEEeCC
Q psy11529        211 GWIHSVAFSKDG------NKLCWTSHDGSINVRMSQ  240 (244)
Q Consensus       211 ~~v~~~~~s~~~------~~l~~~~~dg~i~vwd~~  240 (244)
                      ..+.+++|||-|      .+|++.+.++.|.||...
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~  121 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPP  121 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecC
Confidence            378999999943      378889999999999755

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=94.76  E-value=2  Score=35.44  Aligned_cols=111  Identities=11%  Similarity=0.051  Sum_probs=60.5

Q ss_pred             CCeEEEecCCCeEEEeeeccCCCcceeeeeeccC-CCceE----------EEEeCCCCCeEEEEeCCccEEEEeeeCCCC
Q psy11529         21 RQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGH-DLKVT----------GIDWAPNTNRIVTCSADRNAYVWTQNNDDK   89 (244)
Q Consensus        21 ~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~-~~~v~----------~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~   89 (244)
                      +..+++++.++.|+-+|..+  +  +.+-.+... ...+.          .+++.  +..++.++.|+.+.-.|  .+++
T Consensus        69 ~g~vyv~s~~g~v~AlDa~T--G--k~lW~~~~~~~~~~~~~~~~~~~~rg~av~--~~~v~v~t~dg~l~ALD--a~TG  140 (527)
T TIGR03075        69 DGVMYVTTSYSRVYALDAKT--G--KELWKYDPKLPDDVIPVMCCDVVNRGVALY--DGKVFFGTLDARLVALD--AKTG  140 (527)
T ss_pred             CCEEEEECCCCcEEEEECCC--C--ceeeEecCCCCcccccccccccccccceEE--CCEEEEEcCCCEEEEEE--CCCC
Confidence            34566666678888888776  4  444333211 01111          11222  34566777899999999  8888


Q ss_pred             CceeeEEEeccCcceEEEEECC--CCCeEEEeeC------CCeEEEEEeecCCCceEEE
Q psy11529         90 KWKPTLVLLRINRAATCVKWSP--LENKFAAGSG------ARLISVCYFESENDWWVAK  140 (244)
Q Consensus        90 ~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~------d~~i~i~d~~~~~~~~~~~  140 (244)
                      +..-......... -..+.-+|  .+..++++..      ++.|.-+|.++++..|...
T Consensus       141 k~~W~~~~~~~~~-~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~  198 (527)
T TIGR03075       141 KVVWSKKNGDYKA-GYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRY  198 (527)
T ss_pred             CEEeecccccccc-cccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEecc
Confidence            8655443321111 01111122  1234555432      6889999999988766543

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>KOG2280|consensus

Probab=94.74  E-value=2.2  Score=35.94  Aligned_cols=48  Identities=10%  Similarity=0.288  Sum_probs=35.4

Q ss_pred             CeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEee
Q psy11529         31 QEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQ   84 (244)
Q Consensus        31 ~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~   84 (244)
                      -.|+||+..+     +.+..+.-..+.+-.+.|+.+.. |+....+|++++|++
T Consensus        64 ~~I~If~~sG-----~lL~~~~w~~~~lI~mgWs~~ee-LI~v~k~g~v~Vy~~  111 (829)
T KOG2280|consen   64 PYIRIFNISG-----QLLGRILWKHGELIGMGWSDDEE-LICVQKDGTVHVYGL  111 (829)
T ss_pred             eeEEEEeccc-----cchHHHHhcCCCeeeecccCCce-EEEEeccceEEEeec
Confidence            4588888887     56555544445788999997655 555678999999994

>PLN02193 nitrile-specifier protein

Probab=94.72  E-value=1.9  Score=35.00  Aligned_cols=149  Identities=11%  Similarity=0.121  Sum_probs=65.7

Q ss_pred             CCCeEEEecCC-------CeEEEeeeccCCCcceeeeeeccCCC--ceEEEEeCCCCCeEEEEeCC-----ccEEEEeee
Q psy11529         20 TRQQLAFTPNN-------QEVHLYQYEKAANDWSQLDVLDGHDL--KVTGIDWAPNTNRIVTCSAD-----RNAYVWTQN   85 (244)
Q Consensus        20 ~~~~l~~~~~d-------~~v~v~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~d-----~~i~iwd~~   85 (244)
                      ++..++.|+.+       ..+.+||+..  ..|...........  ........-++..++.|+.+     ..+..||  
T Consensus       175 ~~~iyv~GG~~~~~~~~~~~v~~yD~~~--~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD--  250 (470)
T PLN02193        175 GNKIYSFGGEFTPNQPIDKHLYVFDLET--RTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFD--  250 (470)
T ss_pred             CCEEEEECCcCCCCCCeeCcEEEEECCC--CEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEE--
Confidence            34566666642       2477788776  54543221100111  11111111235555666544     3577788  


Q ss_pred             CCCCCceeeEEEe--ccCcceEEEEECCCCCeEEEeeCCC-----eEEEEEeecCCCceEEEeeec---CCCCceeEEEe
Q psy11529         86 NDDKKWKPTLVLL--RINRAATCVKWSPLENKFAAGSGAR-----LISVCYFESENDWWVAKHIKK---PIKSTITCLDW  155 (244)
Q Consensus        86 ~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~-----~i~i~d~~~~~~~~~~~~~~~---~~~~~v~~~~~  155 (244)
                      ..+.++.......  .....-.+++. -+++.++.|+.++     .+..||+.+.+  |.......   ...... .++.
T Consensus       251 ~~t~~W~~l~~~~~~P~~R~~h~~~~-~~~~iYv~GG~~~~~~~~~~~~yd~~t~~--W~~~~~~~~~~~~R~~~-~~~~  326 (470)
T PLN02193        251 TTTNEWKLLTPVEEGPTPRSFHSMAA-DEENVYVFGGVSATARLKTLDSYNIVDKK--WFHCSTPGDSFSIRGGA-GLEV  326 (470)
T ss_pred             CCCCEEEEcCcCCCCCCCccceEEEE-ECCEEEEECCCCCCCCcceEEEEECCCCE--EEeCCCCCCCCCCCCCc-EEEE
Confidence            6776654332211  01111112222 2455666666543     35566655432  32211110   111111 1222


Q ss_pred             cCCCCEEEEeeCC----CeEEEEEee
Q psy11529        156 HPNNHLLGCGSTD----FKVRVFSAY  177 (244)
Q Consensus       156 ~p~~~~l~~~~~d----g~i~i~d~~  177 (244)
                       -++++++.++.+    ..+.+||+.
T Consensus       327 -~~gkiyviGG~~g~~~~dv~~yD~~  351 (470)
T PLN02193        327 -VQGKVWVVYGFNGCEVDDVHYYDPV  351 (470)
T ss_pred             -ECCcEEEEECCCCCccCceEEEECC
Confidence             256677766655    357888874

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=94.66  E-value=1.3  Score=32.93  Aligned_cols=145  Identities=8%  Similarity=-0.107  Sum_probs=86.0

Q ss_pred             CceEEEEeCCCCCeEEEEeCCccEEEEeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCC
Q psy11529         56 LKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESEND  135 (244)
Q Consensus        56 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~  135 (244)
                      .-+..+.++  +++...+..+.-++|.|  ..+.............+..+++..  .|++..++..|.-+.+.|+...+.
T Consensus        87 ~l~~Dv~vs--e~yvyvad~ssGL~IvD--IS~P~sP~~~~~lnt~gyaygv~v--sGn~aYVadlddgfLivdvsdpss  160 (370)
T COG5276          87 DLFADVRVS--EEYVYVADWSSGLRIVD--ISTPDSPTLIGFLNTDGYAYGVYV--SGNYAYVADLDDGFLIVDVSDPSS  160 (370)
T ss_pred             hhhheeEec--ccEEEEEcCCCceEEEe--ccCCCCcceeccccCCceEEEEEe--cCCEEEEeeccCcEEEEECCCCCC
Confidence            445566666  55677777788899999  444432222222222344455555  477888888666677888887765


Q ss_pred             ceEEEeeecCCCCceeEEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEE
Q psy11529        136 WWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHS  215 (244)
Q Consensus       136 ~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  215 (244)
                      ....... ......-..++.+  |++-..+..|+-+.+-|+...               .....+.....    ...+.+
T Consensus       161 P~lagry-a~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp---------------~sPvli~~~n~----g~g~~s  218 (370)
T COG5276         161 PQLAGRY-ALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNP---------------HSPVLIGSYNT----GPGTYS  218 (370)
T ss_pred             ceeeeee-ccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCC---------------CCCeEEEEEec----CCceEE
Confidence            2222222 2222333556665  777777778888999998422               22334444433    447888


Q ss_pred             EEEecCCCEEEEe
Q psy11529        216 VAFSKDGNKLCWT  228 (244)
Q Consensus       216 ~~~s~~~~~l~~~  228 (244)
                      +..+++-.+++..
T Consensus       219 v~vsdnr~y~vvy  231 (370)
T COG5276         219 VSVSDNRAYLVVY  231 (370)
T ss_pred             EEecCCeeEEEEc
Confidence            8888776666544

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=94.62  E-value=1.8  Score=34.29  Aligned_cols=51  Identities=16%  Similarity=0.015  Sum_probs=37.8

Q ss_pred             CceEEEEEcC-----------CCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCC
Q psy11529         10 NPVTTHAWNN-----------TRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAP   65 (244)
Q Consensus        10 ~~v~~~~~~~-----------~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~   65 (244)
                      +.|+++.|-|           |...+++|..+|.|++|...+     ..+..-.-|..+|..+.+..
T Consensus        57 e~ITsi~clpl~s~~~s~~~~dw~~I~VG~ssG~vrfyte~G-----~LL~~Q~~h~~pV~~ik~~~  118 (415)
T PF14655_consen   57 ECITSILCLPLSSQKRSTGGPDWTCIAVGTSSGYVRFYTENG-----VLLLSQLLHEEPVLKIKCRS  118 (415)
T ss_pred             CEEEEEEEEEeecccccCCCCCcEEEEEEecccEEEEEeccc-----hHHHHHhcCccceEEEEecc
Confidence            5677776644           356789999999999999876     45555455888888888743

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=94.61  E-value=1.7  Score=33.91  Aligned_cols=200  Identities=12%  Similarity=0.038  Sum_probs=105.1

Q ss_pred             CCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeC----CCCCe--EEEEeC-C---ccEEEEeeeCCCC
Q psy11529         20 TRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWA----PNTNR--IVTCSA-D---RNAYVWTQNNDDK   89 (244)
Q Consensus        20 ~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~--l~~~~~-d---~~i~iwd~~~~~~   89 (244)
                      ...+++....++-+.+||+.+     +.++.+.  .+..+.+..-    -.|+.  |+.++. +   .+|++|.++..++
T Consensus        67 ~kSlIigTdK~~GL~VYdL~G-----k~lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g  139 (381)
T PF02333_consen   67 AKSLIIGTDKKGGLYVYDLDG-----KELQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTG  139 (381)
T ss_dssp             GG-EEEEEETTTEEEEEETTS------EEEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTT
T ss_pred             ccceEEEEeCCCCEEEEcCCC-----cEEEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCC
Confidence            445677777788999999998     5666664  2344444331    13443  444443 2   4799998644444


Q ss_pred             CceeeE----EEeccCcceEEEEE--CC-CCC-eEEEeeCCCeEEEEEeecCCC--c-eEEEeeecCCCCceeEEEecCC
Q psy11529         90 KWKPTL----VLLRINRAATCVKW--SP-LEN-KFAAGSGARLISVCYFESEND--W-WVAKHIKKPIKSTITCLDWHPN  158 (244)
Q Consensus        90 ~~~~~~----~~~~~~~~v~~~~~--~~-~~~-~l~~~~~d~~i~i~d~~~~~~--~-~~~~~~~~~~~~~v~~~~~~p~  158 (244)
                      ......    .+......++.+++  +| +|. +.++...+|.+..|.+.....  . ....+.+ ...+.+..|.....
T Consensus       140 ~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f-~~~sQ~EGCVVDDe  218 (381)
T PF02333_consen  140 ELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREF-KVGSQPEGCVVDDE  218 (381)
T ss_dssp             EEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEE-E-SS-EEEEEEETT
T ss_pred             cceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEe-cCCCcceEEEEecc
Confidence            321110    01112234566665  44 354 466677899999888864322  1 1122222 22357889999988


Q ss_pred             CCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEec--CCC-EEEEee-CCCcE
Q psy11529        159 NHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSK--DGN-KLCWTS-HDGSI  234 (244)
Q Consensus       159 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~-~l~~~~-~dg~i  234 (244)
                      ...|+.+-++--|.-|+......             ..++.+....+.+ ....+..++.-.  +++ ||+.++ .+++.
T Consensus       219 ~g~LYvgEE~~GIW~y~Aep~~~-------------~~~~~v~~~~g~~-l~aDvEGlaly~~~~g~gYLivSsQG~~sf  284 (381)
T PF02333_consen  219 TGRLYVGEEDVGIWRYDAEPEGG-------------NDRTLVASADGDG-LVADVEGLALYYGSDGKGYLIVSSQGDNSF  284 (381)
T ss_dssp             TTEEEEEETTTEEEEEESSCCC--------------S--EEEEEBSSSS-B-S-EEEEEEEE-CCC-EEEEEEEGGGTEE
T ss_pred             cCCEEEecCccEEEEEecCCCCC-------------Ccceeeecccccc-cccCccceEEEecCCCCeEEEEEcCCCCeE
Confidence            88999998887666666532110             1233333332210 045677777753  443 555444 57789


Q ss_pred             EEEeCCC
Q psy11529        235 NVRMSQQ  241 (244)
Q Consensus       235 ~vwd~~~  241 (244)
                      .||+.+.
T Consensus       285 ~Vy~r~~  291 (381)
T PF02333_consen  285 AVYDREG  291 (381)
T ss_dssp             EEEESST
T ss_pred             EEEecCC
Confidence            9998763

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=94.61  E-value=2.7  Score=36.30  Aligned_cols=111  Identities=13%  Similarity=0.105  Sum_probs=62.2

Q ss_pred             CCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCC--------ceEEEEeC----------------CCCCeEEEEeCC
Q psy11529         21 RQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDL--------KVTGIDWA----------------PNTNRIVTCSAD   76 (244)
Q Consensus        21 ~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~--------~v~~~~~~----------------~~~~~l~~~~~d   76 (244)
                      +..+.+++.++.|.-.|..+  +  +.+-.+.-...        ....+++.                ..+..++.++.|
T Consensus       194 gg~lYv~t~~~~V~ALDa~T--G--k~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~D  269 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAAT--G--KEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSD  269 (764)
T ss_pred             CCEEEEECCCCeEEEEECCC--C--cEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCC
Confidence            44566667778888778766  4  34433321110        01222221                134478888889


Q ss_pred             ccEEEEeeeCCCCCceeeEEEeccCcce-------------EEEEECC--CCCeEEEeeC----------CCeEEEEEee
Q psy11529         77 RNAYVWTQNNDDKKWKPTLVLLRINRAA-------------TCVKWSP--LENKFAAGSG----------ARLISVCYFE  131 (244)
Q Consensus        77 ~~i~iwd~~~~~~~~~~~~~~~~~~~~v-------------~~~~~~~--~~~~l~~~~~----------d~~i~i~d~~  131 (244)
                      +.+.-.|  .++++....+.   ..+.+             ..+.-.|  .+..+++++.          +|.|+-+|.+
T Consensus       270 g~LiALD--A~TGk~~W~fg---~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~  344 (764)
T TIGR03074       270 ARLIALD--ADTGKLCEDFG---NNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVN  344 (764)
T ss_pred             CeEEEEE--CCCCCEEEEec---CCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECC
Confidence            9999999  88887543321   11111             0111122  1345666642          6889999999


Q ss_pred             cCCCceEEE
Q psy11529        132 SENDWWVAK  140 (244)
Q Consensus       132 ~~~~~~~~~  140 (244)
                      +++..|...
T Consensus       345 TGkl~W~~~  353 (764)
T TIGR03074       345 TGALVWAWD  353 (764)
T ss_pred             CCcEeeEEe
Confidence            998866544

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PLN02153 epithiospecifier protein

Probab=94.43  E-value=1.8  Score=33.42  Aligned_cols=68  Identities=12%  Similarity=0.246  Sum_probs=35.9

Q ss_pred             CCCeEEEecCC-------CeEEEeeeccCCCcceeeeeeccCCC----ceEEEEeCCCCCeEEEEeCC-----ccEEEEe
Q psy11529         20 TRQQLAFTPNN-------QEVHLYQYEKAANDWSQLDVLDGHDL----KVTGIDWAPNTNRIVTCSAD-----RNAYVWT   83 (244)
Q Consensus        20 ~~~~l~~~~~d-------~~v~v~~~~~~~~~~~~~~~~~~~~~----~v~~~~~~~~~~~l~~~~~d-----~~i~iwd   83 (244)
                      ++++++.|+.+       ..+.+||...  ..|...........    ....+.+  +++.++.|+.+     ..+.+||
T Consensus        32 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~--~~W~~~~~~~~~p~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd  107 (341)
T PLN02153         32 GDKLYSFGGELKPNEHIDKDLYVFDFNT--HTWSIAPANGDVPRISCLGVRMVAV--GTKLYIFGGRDEKREFSDFYSYD  107 (341)
T ss_pred             CCEEEEECCccCCCCceeCcEEEEECCC--CEEEEcCccCCCCCCccCceEEEEE--CCEEEEECCCCCCCccCcEEEEE
Confidence            45677777653       3577888776  55554432211111    1222223  35566666643     3577788


Q ss_pred             eeCCCCCcee
Q psy11529         84 QNNDDKKWKP   93 (244)
Q Consensus        84 ~~~~~~~~~~   93 (244)
                        ..+.++..
T Consensus       108 --~~t~~W~~  115 (341)
T PLN02153        108 --TVKNEWTF  115 (341)
T ss_pred             --CCCCEEEE
Confidence              66666543

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=94.37  E-value=2  Score=33.88  Aligned_cols=151  Identities=11%  Similarity=0.087  Sum_probs=81.3

Q ss_pred             eEEEEeCCCCCeEEEEeCCccEEEEeeeCCCCC--ceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCC
Q psy11529         58 VTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKK--WKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESEND  135 (244)
Q Consensus        58 v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~  135 (244)
                      ...+..++++.+++.+..-.-++-||    .+.  +....  ......+..+.|.+++..++++ ..|.+.. ..+.+..
T Consensus       241 f~~v~~~~dG~~~~vg~~G~~~~s~d----~G~~~W~~~~--~~~~~~l~~v~~~~dg~l~l~g-~~G~l~~-S~d~G~~  312 (398)
T PLN00033        241 FSTVNRSPDGDYVAVSSRGNFYLTWE----PGQPYWQPHN--RASARRIQNMGWRADGGLWLLT-RGGGLYV-SKGTGLT  312 (398)
T ss_pred             eeeEEEcCCCCEEEEECCccEEEecC----CCCcceEEec--CCCccceeeeeEcCCCCEEEEe-CCceEEE-ecCCCCc
Confidence            44456677887777665433333444    232  12221  2345668899999998877665 5565533 2333321


Q ss_pred             ce--EEEeeecC-CCCceeEEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCC
Q psy11529        136 WW--VAKHIKKP-IKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGW  212 (244)
Q Consensus       136 ~~--~~~~~~~~-~~~~v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (244)
                      ..  ........ ....+.++.|.+++..+++| ..|.+..-.-                   .++.-............
T Consensus       313 ~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s~D-------------------~G~tW~~~~~~~~~~~~  372 (398)
T PLN00033        313 EEDFDFEEADIKSRGFGILDVGYRSKKEAWAAG-GSGILLRSTD-------------------GGKSWKRDKGADNIAAN  372 (398)
T ss_pred             ccccceeecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEeCC-------------------CCcceeEccccCCCCcc
Confidence            00  01111111 22458899999888766665 6776655432                   22222222110000456


Q ss_pred             eEEEEEecCCCEEEEeeCCCcEEEE
Q psy11529        213 IHSVAFSKDGNKLCWTSHDGSINVR  237 (244)
Q Consensus       213 v~~~~~s~~~~~l~~~~~dg~i~vw  237 (244)
                      .+.+.|.++++.+++| .+|.|.-|
T Consensus       373 ly~v~f~~~~~g~~~G-~~G~il~~  396 (398)
T PLN00033        373 LYSVKFFDDKKGFVLG-NDGVLLRY  396 (398)
T ss_pred             eeEEEEcCCCceEEEe-CCcEEEEe
Confidence            8899998877766655 67877655

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=94.30  E-value=2.6  Score=34.79  Aligned_cols=31  Identities=19%  Similarity=0.273  Sum_probs=24.7

Q ss_pred             CCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCC
Q psy11529        158 NNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNS  206 (244)
Q Consensus       158 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (244)
                      .+.+++.++.+|.++.+|.                  .+++.+..++..
T Consensus       471 ~g~lvf~g~~~G~l~a~D~------------------~TGe~lw~~~~g  501 (527)
T TIGR03075       471 AGDLVFYGTLEGYFKAFDA------------------KTGEELWKFKTG  501 (527)
T ss_pred             CCcEEEEECCCCeEEEEEC------------------CCCCEeEEEeCC
Confidence            4557777888999999999                  788888877653

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=94.20  E-value=1.5  Score=31.85  Aligned_cols=86  Identities=9%  Similarity=0.140  Sum_probs=51.5

Q ss_pred             EEEEeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeC---CCeEEEEEeec--CCCceEEEeeecCCCCceeEE
Q psy11529         79 AYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSG---ARLISVCYFES--ENDWWVAKHIKKPIKSTITCL  153 (244)
Q Consensus        79 i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~i~d~~~--~~~~~~~~~~~~~~~~~v~~~  153 (244)
                      -.+||  ..+++..+..  ......+.+-.+-|||+++.+|+.   ...+++++-..  ....|......-....+..++
T Consensus        48 s~~yD--~~tn~~rpl~--v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~  123 (243)
T PF07250_consen   48 SVEYD--PNTNTFRPLT--VQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTA  123 (243)
T ss_pred             EEEEe--cCCCcEEecc--CCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccc
Confidence            45889  7777654332  123445556678899999999876   24577777543  111111111112233566667


Q ss_pred             EecCCCCEEEEeeCC
Q psy11529        154 DWHPNNHLLGCGSTD  168 (244)
Q Consensus       154 ~~~p~~~~l~~~~~d  168 (244)
                      ..-|||+.|+.|+..
T Consensus       124 ~~L~DG~vlIvGG~~  138 (243)
T PF07250_consen  124 TTLPDGRVLIVGGSN  138 (243)
T ss_pred             eECCCCCEEEEeCcC
Confidence            777899999888876

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]

Probab=94.17  E-value=3.4  Score=35.75  Aligned_cols=207  Identities=13%  Similarity=0.059  Sum_probs=109.6

Q ss_pred             EEEecCCCeEEEeeeccCCCcceeee-----eeccCCCceEEEEeC--CCCCeEEEEeCC---ccEEEEeeeCCCC----
Q psy11529         24 LAFTPNNQEVHLYQYEKAANDWSQLD-----VLDGHDLKVTGIDWA--PNTNRIVTCSAD---RNAYVWTQNNDDK----   89 (244)
Q Consensus        24 l~~~~~d~~v~v~~~~~~~~~~~~~~-----~~~~~~~~v~~~~~~--~~~~~l~~~~~d---~~i~iwd~~~~~~----   89 (244)
                      +++-...|.+++|=.+.+ .++....     .+..-...|+..++.  .+|+.++.++.+   +.|++|.+.+.-+    
T Consensus        65 ~i~Vt~nG~l~l~yQ~~~-~~~~~~s~~el~s~~~s~~~ithAsi~~~~~g~~ili~t~s~~s~~l~~yrv~I~W~~~~~  143 (753)
T PF11635_consen   65 CIAVTRNGLLKLWYQKPD-GQWNESSTAELESLGSSDDLITHASIAPSDNGKSILIATYSSLSKQLRFYRVQIDWNAKPQ  143 (753)
T ss_pred             EEEEecCCeEEEEEEcCC-CccceeehhhhccccccccceeeceeeecCCCCEEEEEEccccCCceEEEEEEEeccCcCc
Confidence            444456899999977431 2222222     111234456555554  567666555554   8899987643322    


Q ss_pred             ----CceeeEEEec---------------------cCcceEEEEECC----C---CCeEEEeeC----CCeEEEEEeecC
Q psy11529         90 ----KWKPTLVLLR---------------------INRAATCVKWSP----L---ENKFAAGSG----ARLISVCYFESE  133 (244)
Q Consensus        90 ----~~~~~~~~~~---------------------~~~~v~~~~~~~----~---~~~l~~~~~----d~~i~i~d~~~~  133 (244)
                          +..+.+.+..                     .-..++.+.|-+    .   ...+++.+.    ...|.-|.++..
T Consensus       144 ~~d~q~~PSl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~LthL~ils~~~~~~~~p~Ili~~~~~~~~~SiI~RweL~~~  223 (753)
T PF11635_consen  144 QIDPQKLPSLFLSHIADETPKDVDPTGWGDPSPDNSMYQLTHLEILSPTPDKDSAPEILIVYSSPNTPSSIIERWELREE  223 (753)
T ss_pred             cCCCCcCCeEEEEeccccccccccCccccccCcccccccceeEEEeccCCCCCCCCeEEEEEEcCCCCCcEEEEEEEEcc
Confidence                1112222111                     112456677754    1   223444332    346888998765


Q ss_pred             CCceE----------------------EEeeecCCCCceeEEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCC
Q psy11529        134 NDWWV----------------------AKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWG  191 (244)
Q Consensus       134 ~~~~~----------------------~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  191 (244)
                      ...-.                      ...........|.+++...-+.+++....||+|.++|..+.+...........
T Consensus       224 ~~~lh~~F~ql~s~~~~~~~~~~~~~l~~~~~i~~~~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~  303 (753)
T PF11635_consen  224 QQPLHPAFQQLGSKKNSSSEPPPTYRLRRLDDITLNKRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEP  303 (753)
T ss_pred             CcccchhhhhcCCCCcCCCCCCCceeEEEecccccCCeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCC
Confidence            32000                      00000112356777877777889999999999999998655443322000000


Q ss_pred             cc--ccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEE
Q psy11529        192 SK--STLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSIN  235 (244)
Q Consensus       192 ~~--~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~  235 (244)
                      ..  ....+.-..+..    ...+..++|||.+..++.-..+|.+.
T Consensus       304 ~~~v~s~~~~Gf~fp~----~~~~~~vafSPt~c~~v~~~~~~~~~  345 (753)
T PF11635_consen  304 PNTVTSLFQAGFHFPC----IQPPLHVAFSPTMCSLVQIDEDGKTK  345 (753)
T ss_pred             cccccccccccccccc----CCCCceEEECcccceEEEEecCCCce
Confidence            00  000011111211    22456789999999999988888855

It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=94.13  E-value=0.97  Score=29.28  Aligned_cols=108  Identities=11%  Similarity=0.175  Sum_probs=64.6

Q ss_pred             EEEeCCCCCeEEEEeCCccEEEEeeeCCCCC-----ceeeEEEeccCcceEEEE---ECCC--CCeEEEeeCCCeEEEEE
Q psy11529         60 GIDWAPNTNRIVTCSADRNAYVWTQNNDDKK-----WKPTLVLLRINRAATCVK---WSPL--ENKFAAGSGARLISVCY  129 (244)
Q Consensus        60 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~-----~~~~~~~~~~~~~v~~~~---~~~~--~~~l~~~~~d~~i~i~d  129 (244)
                      .-.|......|+.++.-++|.|++  .....     ......+......|++++   |.|+  ...|+.|+ ...+..||
T Consensus         3 iGkfDG~~pcL~~aT~~gKV~IH~--ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt-~t~llaYD   79 (136)
T PF14781_consen    3 IGKFDGVHPCLACATTGGKVFIHN--PHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYD   79 (136)
T ss_pred             EEEeCCCceeEEEEecCCEEEEEC--CCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEec-cceEEEEE
Confidence            345666667888888899999998  43221     111233344566676664   4333  34466555 56688999


Q ss_pred             eecCCCceEEEeeecCCCCceeEEEecC----CCCEEEEeeCCCeEEEEEe
Q psy11529        130 FESENDWWVAKHIKKPIKSTITCLDWHP----NNHLLGCGSTDFKVRVFSA  176 (244)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p----~~~~l~~~~~dg~i~i~d~  176 (244)
                      +.....     ...+.....++++.+-.    +..++++| .+..|.-||.
T Consensus        80 V~~N~d-----~Fyke~~DGvn~i~~g~~~~~~~~l~ivG-Gncsi~Gfd~  124 (136)
T PF14781_consen   80 VENNSD-----LFYKEVPDGVNAIVIGKLGDIPSPLVIVG-GNCSIQGFDY  124 (136)
T ss_pred             cccCch-----hhhhhCccceeEEEEEecCCCCCcEEEEC-ceEEEEEeCC
Confidence            988865     33334446777777643    23344444 4556666664

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=94.13  E-value=2.5  Score=34.08  Aligned_cols=144  Identities=13%  Similarity=0.058  Sum_probs=82.5

Q ss_pred             CCCeEE-EecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCC-------eEEEEeCCccEEEEeeeCCCCCc
Q psy11529         20 TRQQLA-FTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTN-------RIVTCSADRNAYVWTQNNDDKKW   91 (244)
Q Consensus        20 ~~~~l~-~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-------~l~~~~~d~~i~iwd~~~~~~~~   91 (244)
                      |..+|. .|+....++-.|++.  +  +.+..+.-|...  -+.|.|..+       .-+.|-.+..|.-.|-+.+..+.
T Consensus       478 dssli~~dg~~~~kLykmDIEr--G--kvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi  551 (776)
T COG5167         478 DSSLIYLDGGERDKLYKMDIER--G--KVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKI  551 (776)
T ss_pred             CcceEEecCCCcccceeeeccc--c--eeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCce
Confidence            334433 344445566666665  5  666677766554  466777422       12334445555555633333221


Q ss_pred             eeeEEEeccCcceEEEEECC----CCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEeeC
Q psy11529         92 KPTLVLLRINRAATCVKWSP----LENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGST  167 (244)
Q Consensus        92 ~~~~~~~~~~~~v~~~~~~~----~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~  167 (244)
                          ........+..-.|+.    ...++|+++..|-|++||--...    ......+....|..+..+.+|+++++.+.
T Consensus       552 ----~v~esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~r----AKtalP~lG~aIk~idvta~Gk~ilaTCk  623 (776)
T COG5167         552 ----KVVESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKR----AKTALPGLGDAIKHIDVTANGKHILATCK  623 (776)
T ss_pred             ----eeeeehhccccccccccccccCceEEEecCCCceeeehhhcch----hhhcCcccccceeeeEeecCCcEEEEeec
Confidence                1112222222222322    34589999999999999843332    23444555678999999999998776664


Q ss_pred             CCeEEEEEeee
Q psy11529        168 DFKVRVFSAYI  178 (244)
Q Consensus       168 dg~i~i~d~~~  178 (244)
                       ..+.+-|++.
T Consensus       624 -~yllL~d~~i  633 (776)
T COG5167         624 -NYLLLTDVPI  633 (776)
T ss_pred             -ceEEEEeccc
Confidence             5677888753

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=93.87  E-value=2.1  Score=32.14  Aligned_cols=206  Identities=15%  Similarity=0.058  Sum_probs=109.2

Q ss_pred             EEEEEcCCCCeEEEecCCCeEEEeeeccC---CCcceeeeeecc-----CCCceEEEEeCCCCC------------eEEE
Q psy11529         13 TTHAWNNTRQQLAFTPNNQEVHLYQYEKA---ANDWSQLDVLDG-----HDLKVTGIDWAPNTN------------RIVT   72 (244)
Q Consensus        13 ~~~~~~~~~~~l~~~~~d~~v~v~~~~~~---~~~~~~~~~~~~-----~~~~v~~~~~~~~~~------------~l~~   72 (244)
                      ..++++|.+...++....+...+||....   +-...++.++..     .....+.+.|+....            .++.
T Consensus        26 WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fif  105 (336)
T TIGR03118        26 WGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFLF  105 (336)
T ss_pred             ceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEEE
Confidence            57899999988888878899999998621   011122333332     234567787774322            3677


Q ss_pred             EeCCccEEEEeeeCCCCCc---eeeEEEecc-Ccce-EEEEECCC--CCeEEEe-eCCCeEEEEEeecCCCceEEEeeec
Q psy11529         73 CSADRNAYVWTQNNDDKKW---KPTLVLLRI-NRAA-TCVKWSPL--ENKFAAG-SGARLISVCYFESENDWWVAKHIKK  144 (244)
Q Consensus        73 ~~~d~~i~iwd~~~~~~~~---~~~~~~~~~-~~~v-~~~~~~~~--~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~  144 (244)
                      +++||+|.-|.  ..-+..   ......... ...| ..+++...  +.+|+.+ -..++|.+||-.-... ........
T Consensus       106 ~tEdGTisaW~--p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~-~~~g~F~D  182 (336)
T TIGR03118       106 VTEDGTLSGWA--PALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPP-PLPGSFID  182 (336)
T ss_pred             EeCCceEEeec--CcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccc-cCCCCccC
Confidence            88999999998  332221   111222211 2333 34555433  4555544 3478888887443321 00000000


Q ss_pred             ---CCC---Cce---------eEEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCC
Q psy11529        145 ---PIK---STI---------TCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSG  209 (244)
Q Consensus       145 ---~~~---~~v---------~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (244)
                         +..   -.|         +-..-.++++.=+.|..-|.|-+||+                   .++.++.+..... 
T Consensus       183 P~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~-------------------~G~l~~r~as~g~-  242 (336)
T TIGR03118       183 PALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTL-------------------NGQLLRRVASSGR-  242 (336)
T ss_pred             CCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcC-------------------CCcEEEEeccCCc-
Confidence               000   011         11111122222222333467888885                   5777777743110 


Q ss_pred             CCCeEEEEEec------CCCEEEEeeCCCcEEEEeCCC
Q psy11529        210 GGWIHSVAFSK------DGNKLCWTSHDGSINVRMSQQ  241 (244)
Q Consensus       210 ~~~v~~~~~s~------~~~~l~~~~~dg~i~vwd~~~  241 (244)
                      -..-+.|+..|      .|.+|+.-=-||+|..+|..+
T Consensus       243 LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~s  280 (336)
T TIGR03118       243 LNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQS  280 (336)
T ss_pred             ccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCC
Confidence            23345667655      566777666799999999753

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=93.86  E-value=0.37  Score=23.49  Aligned_cols=28  Identities=36%  Similarity=0.469  Sum_probs=19.6

Q ss_pred             CCCeEEEEEecCCCEEEEee-CC--CcEEEE
Q psy11529        210 GGWIHSVAFSKDGNKLCWTS-HD--GSINVR  237 (244)
Q Consensus       210 ~~~v~~~~~s~~~~~l~~~~-~d--g~i~vw  237 (244)
                      ...-....|||||+.|+..+ .+  |.-.||
T Consensus         8 ~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    8 PGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             SSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             CccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            55678899999999887665 44  666655

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=93.83  E-value=4.1  Score=35.41  Aligned_cols=122  Identities=16%  Similarity=0.169  Sum_probs=74.5

Q ss_pred             CCCceEEEEEcC-CCCeEEEecCCCeEEEeeecc-CC---CcceeeeeeccC-------CCceEEEEeCCCCCeEEEEeC
Q psy11529          8 GINPVTTHAWNN-TRQQLAFTPNNQEVHLYQYEK-AA---NDWSQLDVLDGH-------DLKVTGIDWAPNTNRIVTCSA   75 (244)
Q Consensus         8 ~~~~v~~~~~~~-~~~~l~~~~~d~~v~v~~~~~-~~---~~~~~~~~~~~~-------~~~v~~~~~~~~~~~l~~~~~   75 (244)
                      +..+..+++|+| +.+.||+....|...||++.. ..   ..+.......++       ...-..+.|.++...|+.++ 
T Consensus       144 gg~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~-  222 (765)
T PF10214_consen  144 GGFPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCN-  222 (765)
T ss_pred             CCCccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEc-
Confidence            366888999999 556899999999999999922 00   111111111111       11223678888877887776 


Q ss_pred             CccEEEEeeeCCCCCceeeEEEeccCcceEEEEECCCC-CeEEEeeCCCeEEEEEeecC
Q psy11529         76 DRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLE-NKFAAGSGARLISVCYFESE  133 (244)
Q Consensus        76 d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~  133 (244)
                      ...+.++|  +++......+........+..+.-+|.. .+++.-+ ...|.+.++...
T Consensus       223 r~~l~~~d--~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT-s~eiiw~~~~~~  278 (765)
T PF10214_consen  223 RSKLMLID--FESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILT-SKEIIWLDVKSS  278 (765)
T ss_pred             CCceEEEE--CCCCCccchhccCCChhheeeEEecCCccceEEEEe-cCeEEEEEccCC
Confidence            45788999  6665533323334456778888888872 2333322 356777676663

These proteins are found in fungi.

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=93.71  E-value=2.6  Score=32.82  Aligned_cols=187  Identities=13%  Similarity=0.135  Sum_probs=87.0

Q ss_pred             EEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeC--CCCCeEEEEeC---C------------
Q psy11529         14 THAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWA--PNTNRIVTCSA---D------------   76 (244)
Q Consensus        14 ~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~---d------------   76 (244)
                      ...++|+.+.++.......|+-.|+.+  .  +....+...+.-+-...|.  .++..++..-.   |            
T Consensus        85 g~~~s~~~~~~~Yv~~~~~l~~vdL~T--~--e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e  160 (386)
T PF14583_consen   85 GGFLSPDDRALYYVKNGRSLRRVDLDT--L--EERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFRE  160 (386)
T ss_dssp             T-EE-TTSSEEEEEETTTEEEEEETTT------EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHH
T ss_pred             ceEEecCCCeEEEEECCCeEEEEECCc--C--cEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHH
Confidence            355667777776655556788888877  4  2323333334444445553  35666543211   1            


Q ss_pred             -----ccEEEEeeeCCCCCceeeEEEeccCcceEEEEECCC-CCeEEEeeC---CCe-EEEEEeecCCCceEEEeeecCC
Q psy11529         77 -----RNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPL-ENKFAAGSG---ARL-ISVCYFESENDWWVAKHIKKPI  146 (244)
Q Consensus        77 -----~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~---d~~-i~i~d~~~~~~~~~~~~~~~~~  146 (244)
                           -..+|..+++.+++....   ......+..+.|+|. ...|+.|-+   +.. -+||-+++......... ....
T Consensus       161 ~~~a~p~~~i~~idl~tG~~~~v---~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~-~~~~  236 (386)
T PF14583_consen  161 FYEARPHCRIFTIDLKTGERKVV---FEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVH-RRME  236 (386)
T ss_dssp             HHHC---EEEEEEETTT--EEEE---EEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS----T
T ss_pred             HHhhCCCceEEEEECCCCceeEE---EecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeee-cCCC
Confidence                 113344443778774333   345677889999996 455666543   332 47888887654111111 1112


Q ss_pred             CCceeEEEecCCCCEEEEee-----CCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecC
Q psy11529        147 KSTITCLDWHPNNHLLGCGS-----TDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKD  221 (244)
Q Consensus       147 ~~~v~~~~~~p~~~~l~~~~-----~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  221 (244)
                      ...+..=-|.|||..|..-+     .+..|.-+|+                  .+++......     ......+--++|
T Consensus       237 ~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~------------------~t~~~~~~~~-----~p~~~H~~ss~D  293 (386)
T PF14583_consen  237 GESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDP------------------DTGERRRLME-----MPWCSHFMSSPD  293 (386)
T ss_dssp             TEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-T------------------TT--EEEEEE-----E-SEEEEEE-TT
T ss_pred             CcccccccccCCCCEEEEEeecCCCCceEEEeeCC------------------CCCCceEEEe-----CCceeeeEEcCC
Confidence            34555667889997554422     1223444554                  2332222121     223456666789


Q ss_pred             CCEEEEeeCC
Q psy11529        222 GNKLCWTSHD  231 (244)
Q Consensus       222 ~~~l~~~~~d  231 (244)
                      |++++.=+.|
T Consensus       294 g~L~vGDG~d  303 (386)
T PF14583_consen  294 GKLFVGDGGD  303 (386)
T ss_dssp             SSEEEEEE--
T ss_pred             CCEEEecCCC
Confidence            9887754444

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=93.60  E-value=0.42  Score=23.28  Aligned_cols=29  Identities=14%  Similarity=0.209  Sum_probs=19.7

Q ss_pred             CCCceEEEEeCCCCCeEEEEeC-C--ccEEEE
Q psy11529         54 HDLKVTGIDWAPNTNRIVTCSA-D--RNAYVW   82 (244)
Q Consensus        54 ~~~~v~~~~~~~~~~~l~~~~~-d--~~i~iw   82 (244)
                      ..+.-....|+|||+.|+.++. +  |...||
T Consensus         7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            4556778899999998876654 4  555554

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>KOG4460|consensus

Probab=93.53  E-value=3.4  Score=33.51  Aligned_cols=80  Identities=9%  Similarity=0.096  Sum_probs=52.3

Q ss_pred             CceEEEEeCCCCCeEEEEeCCccEEEEee-------eCCCCCceeeEEE---------eccCcceEEEEECCCC---CeE
Q psy11529         56 LKVTGIDWAPNTNRIVTCSADRNAYVWTQ-------NNDDKKWKPTLVL---------LRINRAATCVKWSPLE---NKF  116 (244)
Q Consensus        56 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~-------~~~~~~~~~~~~~---------~~~~~~v~~~~~~~~~---~~l  116 (244)
                      -.|..+..++.|..++-.+.+|-+.++=-       ..++++.......         ....-.+..++|+|+.   ..|
T Consensus       104 feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL  183 (741)
T KOG4460|consen  104 FEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHL  183 (741)
T ss_pred             EEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceE
Confidence            34667788999999988888886655420       0233322111111         1122346778999984   678


Q ss_pred             EEeeCCCeEEEEEeecCCC
Q psy11529        117 AAGSGARLISVCYFESEND  135 (244)
Q Consensus       117 ~~~~~d~~i~i~d~~~~~~  135 (244)
                      ..-+.|.++++||+...+.
T Consensus       184 ~iL~sdnviRiy~lS~~te  202 (741)
T KOG4460|consen  184 VLLTSDNVIRIYSLSEPTE  202 (741)
T ss_pred             EEEecCcEEEEEecCCcch
Confidence            8888999999999877655

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=93.36  E-value=2.9  Score=32.27  Aligned_cols=97  Identities=7%  Similarity=0.075  Sum_probs=45.3

Q ss_pred             CCCeEEEecC-CCeEEEeeeccCCCcceeeeeeccC-CCceEEEEeCCCCCeEEEEeCC-----------ccEEEEeeeC
Q psy11529         20 TRQQLAFTPN-NQEVHLYQYEKAANDWSQLDVLDGH-DLKVTGIDWAPNTNRIVTCSAD-----------RNAYVWTQNN   86 (244)
Q Consensus        20 ~~~~l~~~~~-d~~v~v~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d-----------~~i~iwd~~~   86 (244)
                      +++.+++|+. ...+.++|++.....+..+..+... ......+.  -+++..+.|+.+           ..+..||  .
T Consensus        17 ~~~vyv~GG~~~~~~~~~d~~~~~~~W~~l~~~p~~~R~~~~~~~--~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd--~   92 (346)
T TIGR03547        17 GDKVYVGLGSAGTSWYKLDLKKPSKGWQKIADFPGGPRNQAVAAA--IDGKLYVFGGIGKANSEGSPQVFDDVYRYD--P   92 (346)
T ss_pred             CCEEEEEccccCCeeEEEECCCCCCCceECCCCCCCCcccceEEE--ECCEEEEEeCCCCCCCCCcceecccEEEEE--C
Confidence            4566666654 3456677764322445554444311 11111222  246666667642           2466777  6


Q ss_pred             CCCCceeeEEEeccCcceEE-EEE-CCCCCeEEEeeCC
Q psy11529         87 DDKKWKPTLVLLRINRAATC-VKW-SPLENKFAAGSGA  122 (244)
Q Consensus        87 ~~~~~~~~~~~~~~~~~v~~-~~~-~~~~~~l~~~~~d  122 (244)
                      .+.++......  ....... .+. .-+++..+.|+.+
T Consensus        93 ~~~~W~~~~~~--~p~~~~~~~~~~~~~g~IYviGG~~  128 (346)
T TIGR03547        93 KKNSWQKLDTR--SPVGLLGASGFSLHNGQAYFTGGVN  128 (346)
T ss_pred             CCCEEecCCCC--CCCcccceeEEEEeCCEEEEEcCcC
Confidence            67665543211  1111111 111 2356777777654

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=93.34  E-value=2.3  Score=30.98  Aligned_cols=139  Identities=12%  Similarity=0.090  Sum_probs=72.2

Q ss_pred             EEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeC-C--ccEEEEeeeCCC----CCceeeEEEeccCcceE
Q psy11529         33 VHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSA-D--RNAYVWTQNNDD----KKWKPTLVLLRINRAAT  105 (244)
Q Consensus        33 v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d--~~i~iwd~~~~~----~~~~~~~~~~~~~~~v~  105 (244)
                      -.+||+.+  +.++.+...  ..--+.+-.+-+||+.+.+|+. +  ..+++++  ...    ..+............--
T Consensus        48 s~~yD~~t--n~~rpl~v~--td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~--p~~~~~~~~w~e~~~~m~~~RWYp  121 (243)
T PF07250_consen   48 SVEYDPNT--NTFRPLTVQ--TDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFT--PCTSDGTCDWTESPNDMQSGRWYP  121 (243)
T ss_pred             EEEEecCC--CcEEeccCC--CCCcccCcCCCCCCCEEEeCCCCccccceEEEe--cCCCCCCCCceECcccccCCCccc
Confidence            45677766  333332211  1222333457789999998875 2  4578887  333    11111111122344455


Q ss_pred             EEEECCCCCeEEEeeCCC-eEEEEEeecCCCceEEEeee-----cCCCCceeEEEecCCCCEEEEeeCCCeEEEEEeeec
Q psy11529        106 CVKWSPLENKFAAGSGAR-LISVCYFESENDWWVAKHIK-----KPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIK  179 (244)
Q Consensus       106 ~~~~~~~~~~l~~~~~d~-~i~i~d~~~~~~~~~~~~~~-----~~~~~~v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~  179 (244)
                      ...--|||+.|+.|+... +..+|.-.............     .......-.+...|+|++++.+..+.  .|||....
T Consensus       122 T~~~L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s--~i~d~~~n  199 (243)
T PF07250_consen  122 TATTLPDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGS--IIYDYKTN  199 (243)
T ss_pred             cceECCCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCc--EEEeCCCC
Confidence            566678999999988764 33444332111100000000     01112344677789999999887665  45677433

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=93.28  E-value=1.1  Score=37.02  Aligned_cols=71  Identities=14%  Similarity=0.113  Sum_probs=40.9

Q ss_pred             CCCCeEEEeeCCCeEEEEEeec---CCCceEEEeeec-------------------CCCCceeEEEecC----CCCEEEE
Q psy11529        111 PLENKFAAGSGARLISVCYFES---ENDWWVAKHIKK-------------------PIKSTITCLDWHP----NNHLLGC  164 (244)
Q Consensus       111 ~~~~~l~~~~~d~~i~i~d~~~---~~~~~~~~~~~~-------------------~~~~~v~~~~~~p----~~~~l~~  164 (244)
                      ++...++++..||.+.......   ....+.......                   ........+++++    +..++++
T Consensus       156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t  235 (547)
T PF11715_consen  156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT  235 (547)
T ss_dssp             -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred             cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence            4667888888999888877765   222111111100                   0123455566666    6679999


Q ss_pred             eeCCCeEEEEEeeeccc
Q psy11529        165 GSTDFKVRVFSAYIKDI  181 (244)
Q Consensus       165 ~~~dg~i~i~d~~~~~~  181 (244)
                      -+.|+++|+||+.+...
T Consensus       236 l~~D~~LRiW~l~t~~~  252 (547)
T PF11715_consen  236 LSRDHTLRIWSLETGQC  252 (547)
T ss_dssp             EETTSEEEEEETTTTCE
T ss_pred             EeCCCeEEEEECCCCeE
Confidence            99999999999965544

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=92.74  E-value=6.2  Score=34.35  Aligned_cols=165  Identities=14%  Similarity=0.150  Sum_probs=95.9

Q ss_pred             CCCceEEEEEc---C----CCCeEEEecCCCeEEEeeec------cCC-----Ccceeeeeecc---CCCceEEEEeCC-
Q psy11529          8 GINPVTTHAWN---N----TRQQLAFTPNNQEVHLYQYE------KAA-----NDWSQLDVLDG---HDLKVTGIDWAP-   65 (244)
Q Consensus         8 ~~~~v~~~~~~---~----~~~~l~~~~~d~~v~v~~~~------~~~-----~~~~~~~~~~~---~~~~v~~~~~~~-   65 (244)
                      ...+|..|.|.   .    ..++|++=. ...+.|+...      ...     -...++..+..   ...+...++|+| 
T Consensus        78 ~~~PI~qI~fa~~~~~~~~~~~~l~Vrt-~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~  156 (765)
T PF10214_consen   78 DGSPIKQIKFATLSESFDEKSRWLAVRT-ETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPW  156 (765)
T ss_pred             CCCCeeEEEecccccccCCcCcEEEEEc-CCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccC
Confidence            36899999998   2    224565544 4677777721      100     01123334432   234678899999 


Q ss_pred             CCCeEEEEeCCccEEEEeeeCCCCCceeeEEEe-cc----------CcceEEEEECCCCCeEEEeeCCCeEEEEEeecCC
Q psy11529         66 NTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLL-RI----------NRAATCVKWSPLENKFAAGSGARLISVCYFESEN  134 (244)
Q Consensus        66 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~~----------~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~  134 (244)
                      +...||.....|...||++.............. ..          ...-..+.|.++.+.|++++.. .+.++|++...
T Consensus       157 ~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r~-~l~~~d~~~~~  235 (765)
T PF10214_consen  157 DQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNRS-KLMLIDFESNW  235 (765)
T ss_pred             ccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcCC-ceEEEECCCCC
Confidence            666899999999999999510111111111111 11          1223378898887888887664 47888998776


Q ss_pred             CceEEEeeecCCCCceeEEEecCC--CCEEEEeeCCCeEEEEEeee
Q psy11529        135 DWWVAKHIKKPIKSTITCLDWHPN--NHLLGCGSTDFKVRVFSAYI  178 (244)
Q Consensus       135 ~~~~~~~~~~~~~~~v~~~~~~p~--~~~l~~~~~dg~i~i~d~~~  178 (244)
                      ....  .........|.++.-+|.  +..++..  ...|...++..
T Consensus       236 ~~~~--l~~~~~~~~IlDv~~~~~~~~~~FiLT--s~eiiw~~~~~  277 (765)
T PF10214_consen  236 QTEY--LVTAKTWSWILDVKRSPDNPSHVFILT--SKEIIWLDVKS  277 (765)
T ss_pred             ccch--hccCCChhheeeEEecCCccceEEEEe--cCeEEEEEccC
Confidence            4111  222233468899998887  3333332  35677777743

These proteins are found in fungi.

>PLN02193 nitrile-specifier protein

Probab=92.50  E-value=5  Score=32.64  Aligned_cols=108  Identities=11%  Similarity=0.047  Sum_probs=52.3

Q ss_pred             CCCeEEEecCC-----CeEEEeeeccCCCcceeeeeeccCC--CceEEEEeCCCCCeEEEEeCC-----ccEEEEeeeCC
Q psy11529         20 TRQQLAFTPNN-----QEVHLYQYEKAANDWSQLDVLDGHD--LKVTGIDWAPNTNRIVTCSAD-----RNAYVWTQNND   87 (244)
Q Consensus        20 ~~~~l~~~~~d-----~~v~v~~~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~d-----~~i~iwd~~~~   87 (244)
                      ++++++.|+.+     +.+.+||+..  ..|..+.......  ..-.+++. -+++.++.|+.+     ..+..||  ..
T Consensus       228 ~~~lYvfGG~~~~~~~ndv~~yD~~t--~~W~~l~~~~~~P~~R~~h~~~~-~~~~iYv~GG~~~~~~~~~~~~yd--~~  302 (470)
T PLN02193        228 GSTLYVFGGRDASRQYNGFYSFDTTT--NEWKLLTPVEEGPTPRSFHSMAA-DEENVYVFGGVSATARLKTLDSYN--IV  302 (470)
T ss_pred             CCEEEEECCCCCCCCCccEEEEECCC--CEEEEcCcCCCCCCCccceEEEE-ECCEEEEECCCCCCCCcceEEEEE--CC
Confidence            45566677654     4578888877  5565554331101  11112222 245566666643     3466777  66


Q ss_pred             CCCceeeEEEe---ccCcceEEEEECCCCCeEEEeeCC----CeEEEEEeecCC
Q psy11529         88 DKKWKPTLVLL---RINRAATCVKWSPLENKFAAGSGA----RLISVCYFESEN  134 (244)
Q Consensus        88 ~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~d----~~i~i~d~~~~~  134 (244)
                      +.++.......   ........+.+  +++.++.++.+    ..+.+||+.+.+
T Consensus       303 t~~W~~~~~~~~~~~~R~~~~~~~~--~gkiyviGG~~g~~~~dv~~yD~~t~~  354 (470)
T PLN02193        303 DKKWFHCSTPGDSFSIRGGAGLEVV--QGKVWVVYGFNGCEVDDVHYYDPVQDK  354 (470)
T ss_pred             CCEEEeCCCCCCCCCCCCCcEEEEE--CCcEEEEECCCCCccCceEEEECCCCE
Confidence            66543322100   01111112222  45666666654    457777776553

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=92.18  E-value=0.77  Score=22.60  Aligned_cols=20  Identities=20%  Similarity=0.213  Sum_probs=14.9

Q ss_pred             CCCCEEEEee-CCCeEEEEEe
Q psy11529        157 PNNHLLGCGS-TDFKVRVFSA  176 (244)
Q Consensus       157 p~~~~l~~~~-~dg~i~i~d~  176 (244)
                      |+++.|+++. .++.|.++|.
T Consensus         1 pd~~~lyv~~~~~~~v~~id~   21 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDT   21 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEEC
Confidence            5677666554 5789999998

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=92.04  E-value=4.4  Score=30.99  Aligned_cols=63  Identities=11%  Similarity=0.055  Sum_probs=29.7

Q ss_pred             CCCeEEEeeC-----CCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEeeCCCe----EEEEEee
Q psy11529        112 LENKFAAGSG-----ARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFK----VRVFSAY  177 (244)
Q Consensus       112 ~~~~l~~~~~-----d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~----i~i~d~~  177 (244)
                      +++.++.|+.     ...+..||..+.+  |......... ......+..-++++.+.|+.++.    +.+||+.
T Consensus       123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~~--W~~~~~~p~~-~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~  194 (323)
T TIGR03548       123 DGTLYVGGGNRNGKPSNKSYLFNLETQE--WFELPDFPGE-PRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPK  194 (323)
T ss_pred             CCEEEEEeCcCCCccCceEEEEcCCCCC--eeECCCCCCC-CCCcceEEEECCEEEEEcCCCCccccceEEEecC
Confidence            4556666654     2346666666543  3332211111 11112222335677777776542    4567763

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=92.02  E-value=4.9  Score=31.53  Aligned_cols=100  Identities=7%  Similarity=0.069  Sum_probs=44.0

Q ss_pred             CCCeEEEecC-CCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCC-----------ccEEEEeeeCC
Q psy11529         20 TRQQLAFTPN-NQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSAD-----------RNAYVWTQNND   87 (244)
Q Consensus        20 ~~~~l~~~~~-d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----------~~i~iwd~~~~   87 (244)
                      +++.++.++. +..+.++|+....+.+..+..+......-.+++ .-++...+.|+..           ..+..||  ..
T Consensus        38 ~~~iyv~gG~~~~~~~~~d~~~~~~~W~~l~~~p~~~r~~~~~v-~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD--~~  114 (376)
T PRK14131         38 NNTVYVGLGSAGTSWYKLDLNAPSKGWTKIAAFPGGPREQAVAA-FIDGKLYVFGGIGKTNSEGSPQVFDDVYKYD--PK  114 (376)
T ss_pred             CCEEEEEeCCCCCeEEEEECCCCCCCeEECCcCCCCCcccceEE-EECCEEEEEcCCCCCCCCCceeEcccEEEEe--CC
Confidence            5555554543 455677777532234444433321111111122 2245666666543           2466777  66


Q ss_pred             CCCceeeEEEeccCcceEEEEECCCCCeEEEeeCC
Q psy11529         88 DKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGA  122 (244)
Q Consensus        88 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  122 (244)
                      +.++............-......-+++.++.|+.+
T Consensus       115 ~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~  149 (376)
T PRK14131        115 TNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVN  149 (376)
T ss_pred             CCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCC
Confidence            66554432111111111111221356677777653

>KOG3616|consensus

Probab=92.02  E-value=7.1  Score=33.38  Aligned_cols=68  Identities=15%  Similarity=0.229  Sum_probs=46.0

Q ss_pred             CCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEe
Q psy11529          9 INPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWT   83 (244)
Q Consensus         9 ~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd   83 (244)
                      ..-++++.-+|.|+.++.+..||.|++|+...  .....+.+   ...+-..+.|...|  |+++..|.++.-|.
T Consensus        14 ~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~--r~qski~~---~~~p~~nlv~tnhg--l~~~tsdrr~la~~   81 (1636)
T KOG3616|consen   14 DEFTTAIQSHPGGQSFVLAHQDGSIILFNFIP--RRQSKICE---EAKPKENLVFTNHG--LVTATSDRRALAWK   81 (1636)
T ss_pred             cceeeeeeecCCCceEEEEecCCcEEEEeecc--cchhhhhh---hcCCccceeeeccc--eEEEeccchhheee
Confidence            45577888899999999999999999999865  21111222   22233446666544  55666688888887

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=91.91  E-value=2  Score=35.63  Aligned_cols=74  Identities=14%  Similarity=0.235  Sum_probs=42.8

Q ss_pred             CCCCeEEEecCCCeEEEeeecc---CCCcceeee--------eecc-----------CCCceEEEEeCC----CCCeEEE
Q psy11529         19 NTRQQLAFTPNNQEVHLYQYEK---AANDWSQLD--------VLDG-----------HDLKVTGIDWAP----NTNRIVT   72 (244)
Q Consensus        19 ~~~~~l~~~~~d~~v~v~~~~~---~~~~~~~~~--------~~~~-----------~~~~v~~~~~~~----~~~~l~~   72 (244)
                      ++...++++..||.+.......   .+..+....        .+.+           ....+..++.++    +..++++
T Consensus       156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t  235 (547)
T PF11715_consen  156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT  235 (547)
T ss_dssp             -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred             cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence            3666788888889888887653   112111110        0110           123455666666    6778999


Q ss_pred             EeCCccEEEEeeeCCCCCceee
Q psy11529         73 CSADRNAYVWTQNNDDKKWKPT   94 (244)
Q Consensus        73 ~~~d~~i~iwd~~~~~~~~~~~   94 (244)
                      .+.|+++++||  +.++.+...
T Consensus       236 l~~D~~LRiW~--l~t~~~~~~  255 (547)
T PF11715_consen  236 LSRDHTLRIWS--LETGQCLAT  255 (547)
T ss_dssp             EETTSEEEEEE--TTTTCEEEE
T ss_pred             EeCCCeEEEEE--CCCCeEEEE
Confidence            99999999999  788876443

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171

Probab=91.19  E-value=3.3  Score=36.01  Aligned_cols=59  Identities=10%  Similarity=0.069  Sum_probs=40.1

Q ss_pred             eEEEeeC-CCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEE-eeCCC-----eEEEEEee
Q psy11529        115 KFAAGSG-ARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGC-GSTDF-----KVRVFSAY  177 (244)
Q Consensus       115 ~l~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~-~~~dg-----~i~i~d~~  177 (244)
                      .||.... .+.+.+-|.+....    ..........+.+.+|+|||+.|+. .+.++     .|++-+++
T Consensus       320 kiAfv~~~~~~L~~~D~dG~n~----~~ve~~~~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~  385 (912)
T TIGR02171       320 KLAFRNDVTGNLAYIDYTKGAS----RAVEIEDTISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLN  385 (912)
T ss_pred             eEEEEEcCCCeEEEEecCCCCc----eEEEecCCCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehh
Confidence            3444443 35788888877664    2332445678999999999999987 44443     48888885

This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.

>KOG1983|consensus

Probab=90.88  E-value=6.5  Score=35.25  Aligned_cols=31  Identities=16%  Similarity=0.263  Sum_probs=26.8

Q ss_pred             CceEEEEEcCCCCeEEEecCCCeEEEeeecc
Q psy11529         10 NPVTTHAWNNTRQQLAFTPNNQEVHLYQYEK   40 (244)
Q Consensus        10 ~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~   40 (244)
                      .....++|+|...++|.++..|.|++|-...
T Consensus        36 ~~~~~~afD~~q~llai~t~tg~i~~yg~~~   66 (993)
T KOG1983|consen   36 STPSALAFDPTQGLLAIGTRTGAIKIYGQPG   66 (993)
T ss_pred             CCCcceeeccccceEEEEEecccEEEecccc
Confidence            4556789999999999999999999998755

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=90.67  E-value=5.4  Score=29.43  Aligned_cols=112  Identities=7%  Similarity=-0.009  Sum_probs=66.3

Q ss_pred             eEEEEECCCCCeEEEeeCCC--eEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEeeCCCeEEEEEeeeccc
Q psy11529        104 ATCVKWSPLENKFAAGSGAR--LISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDI  181 (244)
Q Consensus       104 v~~~~~~~~~~~l~~~~~d~--~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~  181 (244)
                      ...+.|..++.++-+.+.-|  .|+.+|+.+++.   ......+..---..++...+ ++....-.++...+||.     
T Consensus        47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~---~~~~~l~~~~FgEGit~~~d-~l~qLTWk~~~~f~yd~-----  117 (264)
T PF05096_consen   47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKV---LQSVPLPPRYFGEGITILGD-KLYQLTWKEGTGFVYDP-----  117 (264)
T ss_dssp             EEEEEEEETTEEEEEECSTTEEEEEEEETTTSSE---EEEEE-TTT--EEEEEEETT-EEEEEESSSSEEEEEET-----
T ss_pred             CccEEecCCCEEEEeCCCCCcEEEEEEECCCCcE---EEEEECCccccceeEEEECC-EEEEEEecCCeEEEEcc-----
Confidence            45677867777777776655  688888888764   22222332223334555433 34444457889999998     


Q ss_pred             ccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCCCC
Q psy11529        182 ESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQVL  243 (244)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~  243 (244)
                                   .+.+.+.++.-.    +.=..++  .|++.|+.+.....|+++|.+++.
T Consensus       118 -------------~tl~~~~~~~y~----~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~  160 (264)
T PF05096_consen  118 -------------NTLKKIGTFPYP----GEGWGLT--SDGKRLIMSDGSSRLYFLDPETFK  160 (264)
T ss_dssp             -------------TTTEEEEEEE-S----SS--EEE--ECSSCEEEE-SSSEEEEE-TTT-S
T ss_pred             -------------ccceEEEEEecC----CcceEEE--cCCCEEEEECCccceEEECCcccc
Confidence                         566677666542    2334555  467777766667789999988763

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>KOG1520|consensus

Probab=90.40  E-value=7  Score=30.35  Aligned_cols=19  Identities=21%  Similarity=0.244  Sum_probs=14.6

Q ss_pred             CCeEEEEEecCCCEEEEee
Q psy11529        211 GWIHSVAFSKDGNKLCWTS  229 (244)
Q Consensus       211 ~~v~~~~~s~~~~~l~~~~  229 (244)
                      .-.+.++.|||+.+++.+-
T Consensus       219 ~F~NGlaLS~d~sfvl~~E  237 (376)
T KOG1520|consen  219 YFPNGLALSPDGSFVLVAE  237 (376)
T ss_pred             cccccccCCCCCCEEEEEe
Confidence            3457789999999887763

>PRK13615 lipoprotein LpqB; Provisional

Probab=90.31  E-value=9.5  Score=31.72  Aligned_cols=155  Identities=6%  Similarity=-0.054  Sum_probs=87.1

Q ss_pred             EEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCCCCCce
Q psy11529         13 TTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKWK   92 (244)
Q Consensus        13 ~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~   92 (244)
                      .+++.++++..+|....++.+.++....     .....+.  ...++.-.|.+++ .+-+.-.....++... -.++...
T Consensus       337 ~s~avS~dg~~~A~v~~~~~l~vg~~~~-----~~~~~~~--~~~Lt~PS~d~~g-~vWtv~~g~~~~l~~~-~~~G~~~  407 (557)
T PRK13615        337 DAATLSADGRQAAVRNASGVWSVGDGDR-----DAVLLDT--RPGLVAPSLDAQG-YVWSTPASDPRGLVAW-GPDGVGH  407 (557)
T ss_pred             ccceEcCCCceEEEEcCCceEEEecCCC-----cceeecc--CCccccCcCcCCC-CEEEEeCCCceEEEEe-cCCCceE
Confidence            6778999999988887777777776653     1222222  2345666777777 4444433333444441 1223321


Q ss_pred             eeEEEeccCcceEEEEECCCCCeEEEeeC---CCeEEEEEeecCCC--ceE-EE-eeecCCCCceeEEEecCCCCEEEEe
Q psy11529         93 PTLVLLRINRAATCVKWSPLENKFAAGSG---ARLISVCYFESEND--WWV-AK-HIKKPIKSTITCLDWHPNNHLLGCG  165 (244)
Q Consensus        93 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~i~d~~~~~~--~~~-~~-~~~~~~~~~v~~~~~~p~~~~l~~~  165 (244)
                      .....-.....|..+..|+||..++....   .+.|.+--+.....  ... .. .........+.+++|..++.+.+.+
T Consensus       408 ~v~v~~~~~~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~~~P~~L~~~p~~l~~~l~~v~sl~W~~~~~laVl~  487 (557)
T PRK13615        408 PVAVSWTATGRVVSLEVARDGARVLVQLETGAGPQLLVASIVRDGGVPTSLTTTPLELLASPGTPLDATWVDELDVATLT  487 (557)
T ss_pred             EeeccccCCCeeEEEEeCCCccEEEEEEecCCCCEEEEEEEEeCCCcceEeeeccEEcccCcCcceeeEEcCCCEEEEEe
Confidence            11111112457999999999988766432   45566644444221  011 01 1111223488999999999876665


Q ss_pred             e---CCCeEEEEEe
Q psy11529        166 S---TDFKVRVFSA  176 (244)
Q Consensus       166 ~---~dg~i~i~d~  176 (244)
                      .   .+..+++..+
T Consensus       488 ~~~~~~~~v~~v~v  501 (557)
T PRK13615        488 LAPDGERQVELHQV  501 (557)
T ss_pred             ccCCCCceEEEEEC
Confidence            3   2345666665

>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171

Probab=90.28  E-value=3.9  Score=35.59  Aligned_cols=85  Identities=15%  Similarity=0.143  Sum_probs=49.7

Q ss_pred             eEEEec-CCCeEEEeeeccCCCcceeeeee-ccCCCceEEEEeCCCCCeEEE-EeCCc-----cEEEEeeeCCCCCceee
Q psy11529         23 QLAFTP-NNQEVHLYQYEKAANDWSQLDVL-DGHDLKVTGIDWAPNTNRIVT-CSADR-----NAYVWTQNNDDKKWKPT   94 (244)
Q Consensus        23 ~l~~~~-~d~~v~v~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~-~~~d~-----~i~iwd~~~~~~~~~~~   94 (244)
                      .||.-. ..+.|.+-|..+  .   ..+.+ ..+..+|.+-+|||||++|+. .+.++     .|++-++  .+.... .
T Consensus       320 kiAfv~~~~~~L~~~D~dG--~---n~~~ve~~~~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L--~t~~~~-~  391 (912)
T TIGR02171       320 KLAFRNDVTGNLAYIDYTK--G---ASRAVEIEDTISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNL--NASGSG-L  391 (912)
T ss_pred             eEEEEEcCCCeEEEEecCC--C---CceEEEecCCCceecCcCCCCCCEEEEEEeecCCCCCceEEEEeh--hccCCC-c
Confidence            344443 235888888877  3   22223 336889999999999999987 44443     4777784  332211 2


Q ss_pred             EEEeccCcceEEEEECCCCCe
Q psy11529         95 LVLLRINRAATCVKWSPLENK  115 (244)
Q Consensus        95 ~~~~~~~~~v~~~~~~~~~~~  115 (244)
                      ..+.-....|..-...++|..
T Consensus       392 vkl~ve~aaiprwrv~e~gdt  412 (912)
T TIGR02171       392 VKLPVENAAIPRWRVLENGDT  412 (912)
T ss_pred             eEeecccccccceEecCCCCe
Confidence            222333455555555565544

This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.

>KOG1900|consensus

Probab=89.95  E-value=8.3  Score=34.96  Aligned_cols=157  Identities=11%  Similarity=0.143  Sum_probs=80.6

Q ss_pred             eCCccEEEEeeeCCCCCceeeEEEeccCcceEEEE--------ECCCCCeEEEeeCCCeEEEEEeecCCCc-----eEEE
Q psy11529         74 SADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVK--------WSPLENKFAAGSGARLISVCYFESENDW-----WVAK  140 (244)
Q Consensus        74 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~--------~~~~~~~l~~~~~d~~i~i~d~~~~~~~-----~~~~  140 (244)
                      +-|+.+.+|+  .+++......  .+....|..+.        |-|.=+++++...--.|.++-+.-....     ....
T Consensus        96 TiDn~L~lWn--y~~~~e~~~~--d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~  171 (1311)
T KOG1900|consen   96 TIDNNLFLWN--YESDNELAEY--DGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTS  171 (1311)
T ss_pred             EeCCeEEEEE--cCCCCccccc--cchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccc
Confidence            4588999999  5554322222  22233333332        2222234444444444555544332210     0011


Q ss_pred             eeecCCCCceeEEEecCCCCEEEEeeCCCeEEEEEeeeccccc---C-CCCCCCCc---cccccceeEEec-CCCCCCCC
Q psy11529        141 HIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIES---A-PQSTNWGS---KSTLGNCLVELN-NSSSGGGW  212 (244)
Q Consensus       141 ~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~---~-~~~~~~~~---~~~~~~~~~~~~-~~~~~~~~  212 (244)
                      .........|+++....+|+.+.+|- ||  .+|.+.......   . ........   ..-... +..+. .+   ..+
T Consensus       172 ~~i~~dg~~V~~I~~t~nGRIF~~G~-dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs-~~~~~~~~---~dp  244 (1311)
T KOG1900|consen  172 FKISVDGVSVNCITYTENGRIFFAGR-DG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPS-LLSVPGSS---KDP  244 (1311)
T ss_pred             eeeecCCceEEEEEeccCCcEEEeec-CC--CEEEEEEeccCchhhcccccccCchhHHHHhhhh-hhcCCCCC---CCc
Confidence            11112245788999788888777764 55  667764221111   0 00000000   000000 12222 33   678


Q ss_pred             eEEEEEecCCCEEEEeeCCCcEEEEeCCC
Q psy11529        213 IHSVAFSKDGNKLCWTSHDGSINVRMSQQ  241 (244)
Q Consensus       213 v~~~~~s~~~~~l~~~~~dg~i~vwd~~~  241 (244)
                      |..++....-..+.+-+..|+|.+||+..
T Consensus       245 I~qi~ID~SR~IlY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  245 IRQITIDNSRNILYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             ceeeEeccccceeeeeccCceEEEEEccC
Confidence            99999988888999999999999999975

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=89.16  E-value=14  Score=32.13  Aligned_cols=67  Identities=6%  Similarity=-0.007  Sum_probs=43.4

Q ss_pred             CCeEEEEeCCccEEEEeeeCCCCCceeeEEEeccCc------ceEEEEECC----------------CCCeEEEeeCCCe
Q psy11529         67 TNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRINR------AATCVKWSP----------------LENKFAAGSGARL  124 (244)
Q Consensus        67 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~------~v~~~~~~~----------------~~~~l~~~~~d~~  124 (244)
                      +..++.++.++.|.-.|  ..+++.+-.........      .++.+++..                .+..++.++.|+.
T Consensus       194 gg~lYv~t~~~~V~ALD--a~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~  271 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALD--AATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDAR  271 (764)
T ss_pred             CCEEEEECCCCeEEEEE--CCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCe
Confidence            55677777788888888  78887655544322111      123333321                2447888888999


Q ss_pred             EEEEEeecCCC
Q psy11529        125 ISVCYFESEND  135 (244)
Q Consensus       125 i~i~d~~~~~~  135 (244)
                      +.-.|.++++.
T Consensus       272 LiALDA~TGk~  282 (764)
T TIGR03074       272 LIALDADTGKL  282 (764)
T ss_pred             EEEEECCCCCE
Confidence            99988888876

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>COG5290 IkappaB kinase complex, IKAP component [Transcription]

Probab=88.97  E-value=14  Score=31.89  Aligned_cols=72  Identities=14%  Similarity=0.231  Sum_probs=38.7

Q ss_pred             eEEEEECCCCCeEEEeeCCC---eEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEeeCCCeEEEEEe
Q psy11529        104 ATCVKWSPLENKFAAGSGAR---LISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSA  176 (244)
Q Consensus       104 v~~~~~~~~~~~l~~~~~d~---~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~i~i~d~  176 (244)
                      -..+.|-|.|..+++-..||   ...+.-++.....---.....+....+...+|+-....++.+ ..+.+.+|-.
T Consensus       249 e~~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLrHGef~lr~~~dEk~~~~~wn~~s~vlav~-~~n~~~lwtt  323 (1243)
T COG5290         249 EHQLSWKPQGSKYATIGTDGCSTSESVIFFERNGLRHGEFDLRVGCDEKAFLENWNLLSTVLAVA-EGNLLKLWTT  323 (1243)
T ss_pred             hhccccccCCceeeeeccCCCCCcceEEEEccCCcccCCccccCCchhhhhhhhhhHHHHHHHHh-hcceEEEEEc
Confidence            34589999999999976443   222221222211000001112334566777887665555543 4567888875

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=88.73  E-value=6.8  Score=27.82  Aligned_cols=103  Identities=8%  Similarity=-0.045  Sum_probs=48.3

Q ss_pred             CCCeEEEecC--CCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEE-EeCCccEEEEeeeCCCCCceeeEE
Q psy11529         20 TRQQLAFTPN--NQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVT-CSADRNAYVWTQNNDDKKWKPTLV   96 (244)
Q Consensus        20 ~~~~l~~~~~--d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d~~i~iwd~~~~~~~~~~~~~   96 (244)
                      +|.++.+.+.  ...|++|++++  ++......+.  ...+..=-...-+.++.. .=.+|.-..+|  ..+-+....+.
T Consensus        55 ~g~i~esTG~yg~S~ir~~~L~~--gq~~~s~~l~--~~~~FgEGit~~gd~~y~LTw~egvaf~~d--~~t~~~lg~~~  128 (262)
T COG3823          55 DGHILESTGLYGFSKIRVSDLTT--GQEIFSEKLA--PDTVFGEGITKLGDYFYQLTWKEGVAFKYD--ADTLEELGRFS  128 (262)
T ss_pred             CCEEEEeccccccceeEEEeccC--ceEEEEeecC--CccccccceeeccceEEEEEeccceeEEEC--hHHhhhhcccc
Confidence            3445555443  45799999986  4112222222  111111111111333322 23467777788  55554333332


Q ss_pred             EeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecC
Q psy11529         97 LLRINRAATCVKWSPLENKFAAGSGARLISVCYFESE  133 (244)
Q Consensus        97 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~  133 (244)
                         .++.-+.++-  |+..|+.++...+++.-|.++-
T Consensus       129 ---y~GeGWgLt~--d~~~LimsdGsatL~frdP~tf  160 (262)
T COG3823         129 ---YEGEGWGLTS--DDKNLIMSDGSATLQFRDPKTF  160 (262)
T ss_pred             ---cCCcceeeec--CCcceEeeCCceEEEecCHHHh
Confidence               2333344433  5555666666666776555443

>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins

Probab=88.56  E-value=1.4  Score=19.71  Aligned_cols=25  Identities=16%  Similarity=0.267  Sum_probs=17.1

Q ss_pred             eeEEEecCCCCEEEEeeCCCeEEEE
Q psy11529        150 ITCLDWHPNNHLLGCGSTDFKVRVF  174 (244)
Q Consensus       150 v~~~~~~p~~~~l~~~~~dg~i~i~  174 (244)
                      ...++++++|+++++=+...+|++|
T Consensus         4 P~gvav~~~g~i~VaD~~n~rV~vf   28 (28)
T PF01436_consen    4 PHGVAVDSDGNIYVADSGNHRVQVF   28 (28)
T ss_dssp             EEEEEEETTSEEEEEECCCTEEEEE
T ss_pred             CcEEEEeCCCCEEEEECCCCEEEEC
Confidence            4567777777777776666666654

For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=87.88  E-value=9.6  Score=28.58  Aligned_cols=76  Identities=20%  Similarity=0.353  Sum_probs=47.7

Q ss_pred             CCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEe------CCccEEEEeeeCCCCCceeeEE-E-eccC
Q psy11529         30 NQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCS------ADRNAYVWTQNNDDKKWKPTLV-L-LRIN  101 (244)
Q Consensus        30 d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~------~d~~i~iwd~~~~~~~~~~~~~-~-~~~~  101 (244)
                      -..|.+||..+  .+|....  .+-.+.|+++.|..+.+.++.|.      ....+..||  ..+..+..... . ..-+
T Consensus        15 C~~lC~yd~~~--~qW~~~g--~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd--~~~~~w~~~~~~~s~~ip   88 (281)
T PF12768_consen   15 CPGLCLYDTDN--SQWSSPG--NGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYD--FKNQTWSSLGGGSSNSIP   88 (281)
T ss_pred             CCEEEEEECCC--CEeecCC--CCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEe--cCCCeeeecCCcccccCC
Confidence            35699999887  5444332  22567899999987666666663      355688899  66665432221 0 1234


Q ss_pred             cceEEEEECC
Q psy11529        102 RAATCVKWSP  111 (244)
Q Consensus       102 ~~v~~~~~~~  111 (244)
                      +++..+.+..
T Consensus        89 gpv~a~~~~~   98 (281)
T PF12768_consen   89 GPVTALTFIS   98 (281)
T ss_pred             CcEEEEEeec
Confidence            6788887743

>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast)

Probab=87.67  E-value=16  Score=30.97  Aligned_cols=30  Identities=20%  Similarity=0.320  Sum_probs=27.5

Q ss_pred             CCCceEEEEeCCCCCeEEEEeCCccEEEEe
Q psy11529         54 HDLKVTGIDWAPNTNRIVTCSADRNAYVWT   83 (244)
Q Consensus        54 ~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd   83 (244)
                      -...|-++.|.++++.+++...+|.|.+||
T Consensus       128 l~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d  157 (670)
T PF10395_consen  128 LDDKVVGIKFSSDGKIIYVVLENGSIQIYD  157 (670)
T ss_pred             cccceEEEEEecCCCEEEEEEcCCcEEEEe
Confidence            367889999999999999999999999999

It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=87.53  E-value=10  Score=28.52  Aligned_cols=108  Identities=6%  Similarity=-0.060  Sum_probs=63.2

Q ss_pred             CCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCCCCCceeeEEEe-
Q psy11529         20 TRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLL-   98 (244)
Q Consensus        20 ~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-   98 (244)
                      .|++..++..|.-+.+.|+.++. .+.....+.........++.|  |++-..+..|+-+.+-|+  ..... +.+.-. 
T Consensus       137 sGn~aYVadlddgfLivdvsdps-sP~lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDV--Snp~s-Pvli~~~  210 (370)
T COG5276         137 SGNYAYVADLDDGFLIVDVSDPS-SPQLAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDV--SNPHS-PVLIGSY  210 (370)
T ss_pred             cCCEEEEeeccCcEEEEECCCCC-CceeeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEc--cCCCC-CeEEEEE
Confidence            35666666656667778886643 224444555445555667776  777777778999999994  44332 222222 


Q ss_pred             ccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCC
Q psy11529         99 RINRAATCVKWSPLENKFAAGSGARLISVCYFESEND  135 (244)
Q Consensus        99 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~  135 (244)
                      .....+.++..+++-.+++.. ..| +.+-|....+.
T Consensus       211 n~g~g~~sv~vsdnr~y~vvy-~eg-vlivd~s~~ss  245 (370)
T COG5276         211 NTGPGTYSVSVSDNRAYLVVY-DEG-VLIVDVSGPSS  245 (370)
T ss_pred             ecCCceEEEEecCCeeEEEEc-ccc-eEEEecCCCCC
Confidence            223367888888775554443 233 55555555543

>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides

Probab=87.47  E-value=4.3  Score=24.15  Aligned_cols=32  Identities=25%  Similarity=0.212  Sum_probs=25.1

Q ss_pred             CCCeEEEEEecCCCEEEEee-CCCcEEEEeCCC
Q psy11529        210 GGWIHSVAFSKDGNKLCWTS-HDGSINVRMSQQ  241 (244)
Q Consensus       210 ~~~v~~~~~s~~~~~l~~~~-~dg~i~vwd~~~  241 (244)
                      -...+.+.++|++++|+.++ ..+.|++|..++
T Consensus        53 ~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~~   85 (86)
T PF01731_consen   53 FSFANGIAISPDKKYLYVASSLAHSIHVYKRHK   85 (86)
T ss_pred             CCCCceEEEcCCCCEEEEEeccCCeEEEEEecC
Confidence            34567899999999887665 578999998764

The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=87.37  E-value=10  Score=28.26  Aligned_cols=155  Identities=9%  Similarity=-0.016  Sum_probs=86.9

Q ss_pred             CceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCCCC
Q psy11529         10 NPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDK   89 (244)
Q Consensus        10 ~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~   89 (244)
                      ..-..++-.|||..-.++...+.|--.|-.+  +  +....--+....-..+...|||..-++-+.. -|.-.|  .++.
T Consensus        62 ~ap~dvapapdG~VWft~qg~gaiGhLdP~t--G--ev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~d--pkt~  134 (353)
T COG4257          62 SAPFDVAPAPDGAVWFTAQGTGAIGHLDPAT--G--EVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLD--PKTL  134 (353)
T ss_pred             CCccccccCCCCceEEecCccccceecCCCC--C--ceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEec--Cccc
Confidence            3445667777887777776666666666555  3  2222222233445667788888766553322 344444  4444


Q ss_pred             Cceee-EEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEeeCC
Q psy11529         90 KWKPT-LVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTD  168 (244)
Q Consensus        90 ~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d  168 (244)
                      +.... +.............|.+.|++-+++...-.=+   ++-...  .......+.......|+..|+|..-++.-.+
T Consensus       135 evt~f~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGr---LdPa~~--~i~vfpaPqG~gpyGi~atpdGsvwyaslag  209 (353)
T COG4257         135 EVTRFPLPLEHADANLETAVFDPWGNLWFTGQIGAYGR---LDPARN--VISVFPAPQGGGPYGICATPDGSVWYASLAG  209 (353)
T ss_pred             ceEEeecccccCCCcccceeeCCCccEEEeecccccee---cCcccC--ceeeeccCCCCCCcceEECCCCcEEEEeccc
Confidence            32211 11223356678899999998877765311111   111111  1223333344567889999999877776666


Q ss_pred             CeEEEEEe
Q psy11529        169 FKVRVFSA  176 (244)
Q Consensus       169 g~i~i~d~  176 (244)
                      ..|-..|.
T Consensus       210 naiaridp  217 (353)
T COG4257         210 NAIARIDP  217 (353)
T ss_pred             cceEEccc
Confidence            66776665

>PRK10115 protease 2; Provisional

Probab=87.32  E-value=18  Score=31.16  Aligned_cols=157  Identities=8%  Similarity=0.033  Sum_probs=73.9

Q ss_pred             EEEEEcCCCCeEEEecCC------CeEEEeeeccCCCcceeeeeeccCCCceE-EEEeCCCCCeEEEEeC---CccEEEE
Q psy11529         13 TTHAWNNTRQQLAFTPNN------QEVHLYQYEKAANDWSQLDVLDGHDLKVT-GIDWAPNTNRIVTCSA---DRNAYVW   82 (244)
Q Consensus        13 ~~~~~~~~~~~l~~~~~d------~~v~v~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~---d~~i~iw   82 (244)
                      ..++|++|++.|+.+..+      ..|+.+++.++..  +....+........ .+..+.++++++..+.   ++.+.++
T Consensus       175 ~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~--~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~  252 (686)
T PRK10115        175 PSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPAS--QDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLL  252 (686)
T ss_pred             eEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCChh--HCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEE
Confidence            468999999877776442      3677777766211  22223332223333 3333447887664433   4578888


Q ss_pred             eeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeC-CCeEEEEEeecCCCceEEEeeecC-CCCceeEEEecCCCC
Q psy11529         83 TQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSG-ARLISVCYFESENDWWVAKHIKKP-IKSTITCLDWHPNNH  160 (244)
Q Consensus        83 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~-~~~~v~~~~~~p~~~  160 (244)
                      +....++.....  ..........+. +..+.+++.... ....++..+.-... ......... ....+..+.+. .+.
T Consensus       253 ~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~ly~~tn~~~~~~~l~~~~~~~~-~~~~~l~~~~~~~~i~~~~~~-~~~  327 (686)
T PRK10115        253 DAELADAEPFVF--LPRRKDHEYSLD-HYQHRFYLRSNRHGKNFGLYRTRVRDE-QQWEELIPPRENIMLEGFTLF-TDW  327 (686)
T ss_pred             ECcCCCCCceEE--EECCCCCEEEEE-eCCCEEEEEEcCCCCCceEEEecCCCc-ccCeEEECCCCCCEEEEEEEE-CCE
Confidence            832223332111  122222222222 223333333222 22333433332211 011222222 23468888887 334


Q ss_pred             EEEEeeCCCeEEEEEe
Q psy11529        161 LLGCGSTDFKVRVFSA  176 (244)
Q Consensus       161 ~l~~~~~dg~i~i~d~  176 (244)
                      ++++...+|.-+++-+
T Consensus       328 l~~~~~~~g~~~l~~~  343 (686)
T PRK10115        328 LVVEERQRGLTSLRQI  343 (686)
T ss_pred             EEEEEEeCCEEEEEEE
Confidence            6666677776666554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	244
3dxk_C	372	Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND IN		1e-79
1k8k_C	372	Crystal Structure Of Arp23 COMPLEX Length = 372		2e-79
3dwl_C	377	Crystal Structure Of Fission Yeast Arp2/3 Complex L		2e-64
3fm0_A	345	Crystal Structure Of Wd40 Protein Ciao1 Length = 34		8e-10
2hes_X	330	Cytosolic Iron-sulphur Assembly Protein- 1 Length =		5e-06
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		3e-04
3jrp_A	379	Sec13 With Nup145c (Aa109-179) Insertion Blade Leng		5e-04
2pm6_B	297	Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF		5e-04
2pm9_B	297	Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT O		5e-04

>pdb|3DXK|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR Ck0944636 Length = 372

Iteration: 1
 Score =  292 bits (748), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 135/230 (58%), Positives = 168/230 (73%), Gaps = 7/230 (3%)
Query: 5   YSFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWA 64
           +SF + P++ HAWN  R Q+A  PNN EVH+Y  EK+ N W Q+  L  H+ +VTGIDWA
Sbjct: 4   HSFLVEPISCHAWNKDRTQIAICPNNHEVHIY--EKSGNKWVQVHELKEHNGQVTGIDWA 61
Query: 65  PNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARL 124
           P++NRIVTC  DRNAYVWT     + WKPTLV+LRINRAA CV+W+P E KFA GSG+R+
Sbjct: 62  PDSNRIVTCGTDRNAYVWTLKG--RTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRV 119
Query: 125 ISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESA 184
           IS+CYFE ENDWWV KHIKKPI+ST+  LDWHPN+ LL  GS DFK R+FSAYIK++E  
Sbjct: 120 ISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEER 179
Query: 185 PQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSI 234
           P  T WGSK   G  + E   SSS  GW+H V FS +G+++ W SHD ++
Sbjct: 180 PAPTPWGSKMPFGELMFE---SSSSCGWVHGVCFSANGSRVAWVSHDSTV 226

>pdb|1K8K|C Chain C, Crystal Structure Of Arp23 COMPLEX Length = 372

Iteration: 1
 Score =  291 bits (746), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 134/230 (58%), Positives = 168/230 (73%), Gaps = 7/230 (3%)
Query: 5   YSFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWA 64
           +SF + P++ HAWN  R Q+A  PNN EVH+Y  EK+ N W Q+  L  H+ +VTG+DWA
Sbjct: 4   HSFLVEPISCHAWNKDRTQIAICPNNHEVHIY--EKSGNKWVQVHELKEHNGQVTGVDWA 61
Query: 65  PNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARL 124
           P++NRIVTC  DRNAYVWT     + WKPTLV+LRINRAA CV+W+P E KFA GSG+R+
Sbjct: 62  PDSNRIVTCGTDRNAYVWTLKG--RTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRV 119
Query: 125 ISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESA 184
           IS+CYFE ENDWWV KHIKKPI+ST+  LDWHPN+ LL  GS DFK R+FSAYIK++E  
Sbjct: 120 ISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEER 179
Query: 185 PQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSI 234
           P  T WGSK   G  + E   SSS  GW+H V FS +G+++ W SHD ++
Sbjct: 180 PAPTPWGSKMPFGELMFE---SSSSCGWVHGVCFSANGSRVAWVSHDSTV 226

>pdb|3DWL|C Chain C, Crystal Structure Of Fission Yeast Arp2/3 Complex Lacking The Arp2 Subunit Length = 377

Iteration: 1
 Score =  242 bits (617), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 115/226 (50%), Positives = 148/226 (65%), Gaps = 7/226 (3%)
Query: 11  PVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRI 70
           P   HA+N+ R +   T    +V LY  E+  N W        HD  VT +DWAP +NRI
Sbjct: 13  PSYEHAFNSQRTEFVTTTATNQVELY--EQDGNGWKHARTFSDHDKIVTCVDWAPKSNRI 70
Query: 71  VTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYF 130
           VTCS DRNAYV+ +   D  WK TLVLLR+NRAAT V+WSP E+KFA GSGAR+ISVCYF
Sbjct: 71  VTCSQDRNAYVY-EKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYF 129
Query: 131 ESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNW 190
           E ENDWWV+KH+K+P++STI  LDWHPNN LL  G  D K  V SAY++D+++ P+++ W
Sbjct: 130 EQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVW 189
Query: 191 GSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINV 236
           GS+        E  +    GGW+H+V FS  GN L +  HD S+ +
Sbjct: 190 GSRLPFNTVCAEYPS----GGWVHAVGFSPSGNALAYAGHDSSVTI 231

>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 55/230 (23%), Positives = 96/230 (41%), Gaps = 27/230 (11%)
Query: 16  AWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVL-DGHDLKVTGIDWAPNTNRIVTCS 74
           AWN     LA    ++ + ++  E   + W    VL +GH   V  + W+P  N + + S
Sbjct: 23  AWNPAGTLLASCGGDRRIRIWGTE--GDSWICKSVLSEGHQRTVRKVAWSPCGNYLASAS 80
Query: 75  ADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESEN 134
            D    +W +N DD  ++    L         V W+P  N  A  S  + + V   + E+
Sbjct: 81  FDATTCIWKKNQDD--FECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEED 138
Query: 135 DWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKS 194
           ++     +    +  +  + WHP+  LL   S D  V+++           +  +W   +
Sbjct: 139 EYECVSVLNSHTQD-VKHVVWHPSQELLASASYDDTVKLYRE---------EEDDWVCCA 188
Query: 195 TLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQVLP 244
           TL     E + S+     + S+AF   G +L   S D +  VR+ +Q LP
Sbjct: 189 TL-----EGHEST-----VWSLAFDPSGQRLASCSDDRT--VRIWRQYLP 226

>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1 Length = 330

Iteration: 1
 Score = 48.1 bits (113), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 42/182 (23%), Positives = 84/182 (46%), Gaps = 8/182 (4%)
Query: 10  NPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVL---DGHDLKVTGIDWAPN 66
             + + AW      LA    +  V ++  E++A+   ++D+L   +GH+ +V G+ W+ +
Sbjct: 59  KAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSND 118
Query: 67  TNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLIS 126
              + TCS D++ ++W  +   ++++   VL   ++    V W P E   A+ S    + 
Sbjct: 119 GYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVR 178
Query: 127 VCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHL--LGCGSTDFKVRVFSAYIKDIESA 184
           +  ++  +D W    +    + T+   D+     +  L  GS D  VRV+  Y+ D E  
Sbjct: 179 I--WKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWK-YMGDDEDD 235
Query: 185 PQ 186
            Q
Sbjct: 236 QQ 237

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 8/92 (8%)
Query: 50  VLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKW 109
           +L GH+  +  +D+ P+ +++V+ S DR   +W     D +     + L I    T V  
Sbjct: 160 ILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIW-----DLRTGQCSLTLSIEDGVTTVAV 214
Query: 110 SPLENKF-AAGSGARLISVCYFESENDWWVAK 140
           SP + K+ AAGS  R + V  ++SE  + V +
Sbjct: 215 SPGDGKYIAAGSLDRAVRV--WDSETGFLVER 244

>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade Length = 379

Iteration: 1
 Score = 41.6 bits (96), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 5/84 (5%)
Query: 18  NNTRQQLAFTPNNQE--VHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNT---NRIVT 72
           N T++   F     +  V +++Y   A  +     L+GH   V  + W+P     + + +
Sbjct: 167 NGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLAS 226
Query: 73  CSADRNAYVWTQNNDDKKWKPTLV 96
            S DR   +WTQ+N+   WK TL+
Sbjct: 227 VSQDRTCIIWTQDNEQGPWKKTLL 250

>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE Copii Vesicular Coat, Native Version Length = 297

Iteration: 1
 Score = 41.6 bits (96), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 5/84 (5%)
Query: 18  NNTRQQLAFTPNNQE--VHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNT---NRIVT 72
           N T++   F     +  V +++Y   A  +     L+GH   V  + W+P     + + +
Sbjct: 165 NGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLAS 224
Query: 73  CSADRNAYVWTQNNDDKKWKPTLV 96
            S DR   +WTQ+N+   WK TL+
Sbjct: 225 VSQDRTCIIWTQDNEQGPWKKTLL 248

>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE Copii Vesicular Coat Length = 297

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 5/84 (5%)
Query: 18  NNTRQQLAFTPNNQE--VHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNT---NRIVT 72
           N T++   F     +  V +++Y   A  +     L+GH   V  + W+P     + + +
Sbjct: 165 NGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMAS 224
Query: 73  CSADRNAYVWTQNNDDKKWKPTLV 96
            S DR   +WTQ+N+   WK TL+
Sbjct: 225 VSQDRTCIIWTQDNEQGPWKKTLL 248

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	244
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	100.0
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.98
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.98
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.98
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.98
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.97
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.97
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.97
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.97
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.97
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.97
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.96
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.96
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.96
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.96
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.96
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.95
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.95
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.94
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.94
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.93
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.93
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.93
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.93
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.93
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.92
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.92
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.91
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.91
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.91
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.91
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.91
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.91
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.91
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.91
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.91
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.91
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.9
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.9
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.9
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.9
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.9
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.89
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.89
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.89
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.88
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.87
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.86
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.86
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.86
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.85
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.85
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.84
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.83
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.82
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.82
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.82
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.81
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.8
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.8
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.78
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.78
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.78
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.77
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.76
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.76
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.76
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.75
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.75
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.75
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.73
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.73
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.73
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.72
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.71
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.7
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.67
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.67
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.67
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.67
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.66
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.66
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.66
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.65
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.65
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.64
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.63
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.62
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.62
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.61
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.61
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.61
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.6
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.6
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.6
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.57
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.56
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.55
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.55
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.54
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.54
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.53
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.5
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.46
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.42
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.42
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.39
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.36
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.36
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.35
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.35
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.34
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.34
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.25
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	99.23
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.22
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	99.19
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	99.18
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.18
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	99.13
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.11
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	99.1
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	99.09
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	99.06
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	99.05
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.05
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	99.04
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.03
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.03
2p4o_A	306	Hypothetical protein; putative lactonase, structur	99.02
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.01
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.0
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.91
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.91
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.86
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.85
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.83
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.82
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.81
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.79
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.77
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	98.75
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.75
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.75
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.73
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.73
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.72
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.72
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.7
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.7
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.69
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	98.68
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.67
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.63
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.62
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.61
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.59
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.57
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.53
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.53
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.52
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.52
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.47
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.46
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	98.44
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.44
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.44
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.4
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.39
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.37
3kya_A	496	Putative phosphatase; structural genomics, joint c	98.35
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.35
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.35
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.33
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.3
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.22
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	98.21
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.19
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	98.18
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	98.16
3kya_A	496	Putative phosphatase; structural genomics, joint c	98.14
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.13
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.13
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	98.12
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	98.12
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	98.11
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	98.1
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	98.09
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	98.08
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	98.08
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	98.07
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	98.03
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	97.99
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	97.94
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.93
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	97.92
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	97.9
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.9
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	97.88
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	97.88
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.87
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	97.86
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	97.85
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	97.84
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	97.78
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.77
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	97.77
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	97.72
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	97.72
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.7
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	97.68
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	97.66
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	97.65
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	97.57
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	97.55
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	97.55
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	97.44
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	97.41
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	97.33
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	97.31
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	97.23
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	97.16
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	97.14
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	97.05
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	96.88
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	96.81
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	96.64
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	96.24
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	96.14
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	96.02
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	95.67
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	95.55
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	95.25
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	94.92
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	94.66
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	94.57
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	93.81
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	92.41
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	92.25
1sqj_A	789	OXG-RCBH, oligoxyloglucan reducing-END-specific ce	91.9
3ott_A	758	Two-component system sensor histidine kinase; beta	90.03
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	89.9
1suu_A	312	DNA gyrase subunit A; topoisomerase,DNA gyrase, be	86.36
3zwu_A	592	Alkaline phosphatase PHOX; hydrolase, beta-propell	85.99
3uc1_A	327	DNA gyrase subunit A; DNA binding protein, topoiso	85.28
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	84.61
1sqj_A	789	OXG-RCBH, oligoxyloglucan reducing-END-specific ce	84.41
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	83.42
3zwu_A	592	Alkaline phosphatase PHOX; hydrolase, beta-propell	83.38
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	82.74
4a9v_A	592	PHOX; hydrolase, beta-propeller; 1.10A {Pseudomona	82.55
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	81.36
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	81.34
3no0_A	276	DNA gyrase subunit A; DNA topology, topoisomerase,	80.39
3uc1_A	327	DNA gyrase subunit A; DNA binding protein, topoiso	80.08

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=3.8e-42  Score=256.30  Aligned_cols=226  Identities=15%  Similarity=0.176  Sum_probs=190.6

Q ss_pred             eeEEeCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEE
Q psy11529          3 EVYSFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVW   82 (244)
Q Consensus         3 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw   82 (244)
                      ..+..|.+.|.+++|+|++++|++++.||.|++||+.+  +  ..+..+..|..+|.+++|+|++++|++|+.|+.|++|
T Consensus         7 ~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~--~--~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vw   82 (304)
T 2ynn_A            7 KTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYET--Q--VEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVF   82 (304)
T ss_dssp             EEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTT--T--EEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEE
T ss_pred             EeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCC--C--ceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEE
Confidence            34566799999999999999999999999999999987  5  6788899999999999999999999999999999999


Q ss_pred             eeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecC-CCCE
Q psy11529         83 TQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHP-NNHL  161 (244)
Q Consensus        83 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~  161 (244)
                      |  ..+++.  ...+.+|...|.+++|+|++++|++++.|++|++||++.+..   ......+|...|.+++|+| ++.+
T Consensus        83 d--~~~~~~--~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~---~~~~~~~h~~~v~~v~~~p~~~~~  155 (304)
T 2ynn_A           83 N--YNTGEK--VVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWA---LEQTFEGHEHFVMCVAFNPKDPST  155 (304)
T ss_dssp             E--TTTCCE--EEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTE---EEEEECCCCSCEEEEEECTTCTTE
T ss_pred             E--CCCCcE--EEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcc---hhhhhcccCCcEEEEEECCCCCCE
Confidence            9  777764  344568999999999999999999999999999999988753   4556778899999999999 6789


Q ss_pred             EEEeeCCCeEEEEEeeecccccC----C-------------CCCCC--Cc--------cccccceeEEecCCCCCCCCeE
Q psy11529        162 LGCGSTDFKVRVFSAYIKDIESA----P-------------QSTNW--GS--------KSTLGNCLVELNNSSSGGGWIH  214 (244)
Q Consensus       162 l~~~~~dg~i~i~d~~~~~~~~~----~-------------~~~~~--~~--------~~~~~~~~~~~~~~~~~~~~v~  214 (244)
                      |++|+.|+.|++||++.......    .             .....  +.        ....++++..+.+|   ...|.
T Consensus       156 l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h---~~~v~  232 (304)
T 2ynn_A          156 FASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGH---MSNVS  232 (304)
T ss_dssp             EEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECC---SSCEE
T ss_pred             EEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCC---CCCEE
Confidence            99999999999999864322110    0             00000  00        23456777888888   89999


Q ss_pred             EEEEecCCCEEEEeeCCCcEEEEeCCCC
Q psy11529        215 SVAFSKDGNKLCWTSHDGSINVRMSQQV  242 (244)
Q Consensus       215 ~~~~s~~~~~l~~~~~dg~i~vwd~~~~  242 (244)
                      +++|+|++++|++++.||+|++||+++.
T Consensus       233 ~~~~~p~~~~l~s~s~Dg~i~iWd~~~~  260 (304)
T 2ynn_A          233 FAVFHPTLPIIISGSEDGTLKIWNSSTY  260 (304)
T ss_dssp             EEEECSSSSEEEEEETTSCEEEEETTTC
T ss_pred             EEEECCCCCEEEEEcCCCeEEEEECCCC
Confidence            9999999999999999999999999864

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=6.9e-42  Score=254.08  Aligned_cols=218  Identities=17%  Similarity=0.315  Sum_probs=183.5

Q ss_pred             CceeEEeCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCC--CCCeEEEEeCCcc
Q psy11529          1 MAEVYSFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAP--NTNRIVTCSADRN   78 (244)
Q Consensus         1 m~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~   78 (244)
                      |.-++..|.+.|++++|+|+|++||+|+.|+.|+||++.+  +..+.+..+.+|.++|.+++|+|  ++++|++|+.|++
T Consensus         1 ~~~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~--~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~   78 (297)
T 2pm7_B            1 MVVIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEG--ETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGK   78 (297)
T ss_dssp             -CEECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCS--SCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTE
T ss_pred             CceeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCC--CCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCE
Confidence            5566677899999999999999999999999999999975  32367788999999999999987  3899999999999


Q ss_pred             EEEEeeeCCCCCceeeEEEeccCcceEEEEECCC--CCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEec
Q psy11529         79 AYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPL--ENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWH  156 (244)
Q Consensus        79 i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~  156 (244)
                      |++||  +.+++......+..|...|.+++|+|+  +.+|++++.|+.|++||++.....  .......|...|.+++|+
T Consensus        79 v~iWd--~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~--~~~~~~~h~~~v~~~~~~  154 (297)
T 2pm7_B           79 VMIWK--EENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTT--SPIIIDAHAIGVNSASWA  154 (297)
T ss_dssp             EEEEE--BSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCB--CCEEEECCSSCEEEEEEC
T ss_pred             EEEEE--cCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCce--eeeeeecccCccceEeec
Confidence            99999  666654445556678999999999998  889999999999999999876431  123456788899999999


Q ss_pred             CC-------------CCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCC-
Q psy11529        157 PN-------------NHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDG-  222 (244)
Q Consensus       157 p~-------------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-  222 (244)
                      |+             +++|++|+.|++|++||++...              ........+.+|   ...|.+++|+|++ 
T Consensus       155 p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~--------------~~~~~~~~l~~H---~~~V~~v~~sp~~~  217 (297)
T 2pm7_B          155 PATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDA--------------QTYVLESTLEGH---SDWVRDVAWSPTVL  217 (297)
T ss_dssp             CCC------------CCEEEEEETTSCEEEEEEETTT--------------TEEEEEEEECCC---SSCEEEEEECCCCS
T ss_pred             CCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCC--------------ceEEEEEEecCC---CCceEEEEECCCCC
Confidence            97             5799999999999999994321              112256678888   8999999999985 


Q ss_pred             --CEEEEeeCCCcEEEEeCCC
Q psy11529        223 --NKLCWTSHDGSINVRMSQQ  241 (244)
Q Consensus       223 --~~l~~~~~dg~i~vwd~~~  241 (244)
                        .+|++++.|++|++||+++
T Consensus       218 ~~~~las~s~D~~v~iWd~~~  238 (297)
T 2pm7_B          218 LRSYMASVSQDRTCIIWTQDN  238 (297)
T ss_dssp             SSEEEEEEETTSCEEEEEESS
T ss_pred             CceEEEEEECCCcEEEEEeCC
Confidence              7999999999999999875

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=3.7e-41  Score=255.16  Aligned_cols=209  Identities=20%  Similarity=0.373  Sum_probs=178.7

Q ss_pred             eCCC-ceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeee-eeccCCCceEEEEeCCCCCeEEEEeCCccEEEEee
Q psy11529          7 FGIN-PVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLD-VLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQ   84 (244)
Q Consensus         7 ~~~~-~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~   84 (244)
                      .|.+ .|.+++|+|+|++||+|+.|+.|+||++.+  +...... ...+|...|.+++|+|++++|++++.|+.+++|| 
T Consensus        13 ~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~--~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~-   89 (345)
T 3fm0_A           13 AHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEG--DSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWK-   89 (345)
T ss_dssp             CSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEET--TEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEE-
T ss_pred             CCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCC--CcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEE-
Confidence            3555 999999999999999999999999999987  4222222 3468999999999999999999999999999999 


Q ss_pred             eCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEE
Q psy11529         85 NNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGC  164 (244)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~  164 (244)
                       ...+.......+.+|...|.+++|+|++++|++++.|+.|++||++.... .........|...|.+++|+|++++|++
T Consensus        90 -~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~-~~~~~~~~~h~~~v~~~~~~p~~~~l~s  167 (345)
T 3fm0_A           90 -KNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDE-YECVSVLNSHTQDVKHVVWHPSQELLAS  167 (345)
T ss_dssp             -ECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSC-EEEEEEECCCCSCEEEEEECSSSSCEEE
T ss_pred             -ccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCC-eEEEEEecCcCCCeEEEEECCCCCEEEE
Confidence             66665555666778999999999999999999999999999999988754 2234556778899999999999999999


Q ss_pred             eeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeC
Q psy11529        165 GSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMS  239 (244)
Q Consensus       165 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~  239 (244)
                      ++.|+.|++||++..                ...+...+.+|   ...|.+++|+|+|++|++++.|++|++||+
T Consensus       168 ~s~d~~i~~w~~~~~----------------~~~~~~~~~~h---~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~  223 (345)
T 3fm0_A          168 ASYDDTVKLYREEED----------------DWVCCATLEGH---ESTVWSLAFDPSGQRLASCSDDRTVRIWRQ  223 (345)
T ss_dssp             EETTSCEEEEEEETT----------------EEEEEEEECCC---SSCEEEEEECTTSSEEEEEETTSCEEEEEE
T ss_pred             EeCCCcEEEEEecCC----------------CEEEEEEecCC---CCceEEEEECCCCCEEEEEeCCCeEEEecc
Confidence            999999999998421                12345678888   899999999999999999999999999996

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=1.9e-41  Score=256.09  Aligned_cols=204  Identities=15%  Similarity=0.194  Sum_probs=172.6

Q ss_pred             eCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCC-eEEEEeCCccEEEEeee
Q psy11529          7 FGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTN-RIVTCSADRNAYVWTQN   85 (244)
Q Consensus         7 ~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~   85 (244)
                      .|.+.|++++|+|+|++|++|+.|+.|++||+.+  +  +.+..+.+|...|.+++|+|++. +|++++.|++|++||  
T Consensus       125 ~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~--~--~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd--  198 (344)
T 4gqb_B          125 EHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQ--Q--VVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWD--  198 (344)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT--T--EEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEE--
T ss_pred             CCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCC--C--cEEEEEcCcCCceEEEEecCCCCCceeeecccccccccc--
Confidence            4689999999999999999999999999999987  5  78889999999999999999875 788999999999999  


Q ss_pred             CCCCCceeeEEEeccCcceEEEEECCC-CCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCC-CEEE
Q psy11529         86 NDDKKWKPTLVLLRINRAATCVKWSPL-ENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNN-HLLG  163 (244)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~l~  163 (244)
                      +++++....+....+...+.+++|+|+ +++|++|+.|+.|++||+++++.    ......|...|++++|+|++ ++|+
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~----~~~~~~h~~~v~~v~fsp~g~~~la  274 (344)
T 4gqb_B          199 TRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSC----VLSSAVHSQCVTGLVFSPHSVPFLA  274 (344)
T ss_dssp             TTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--C----CEEEECCSSCEEEEEECSSSSCCEE
T ss_pred             ccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcE----EEEEcCCCCCEEEEEEccCCCeEEE
Confidence            777775554444456667999999995 56789999999999999998875    44556788999999999998 5899


Q ss_pred             EeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCC-EEEEeeCCCcEEEEeCCCC
Q psy11529        164 CGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGN-KLCWTSHDGSINVRMSQQV  242 (244)
Q Consensus       164 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~vwd~~~~  242 (244)
                      +|+.|++|+|||+                  ..+++ ..+.+|   ...|++++|+|+++ +|++++.|++|++|++.+.
T Consensus       275 sgs~D~~i~vwd~------------------~~~~~-~~~~~H---~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~  332 (344)
T 4gqb_B          275 SLSEDCSLAVLDS------------------SLSEL-FRSQAH---RDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTE  332 (344)
T ss_dssp             EEETTSCEEEECT------------------TCCEE-EEECCC---SSCEEEEEECSSSTTEEEEEETTSCEEEEECCC-
T ss_pred             EEeCCCeEEEEEC------------------CCCcE-EEEcCC---CCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCC
Confidence            9999999999998                  44544 457788   89999999999987 5778999999999999754

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=3e-42  Score=263.95  Aligned_cols=232  Identities=50%  Similarity=0.935  Sum_probs=190.4

Q ss_pred             eeEEeCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEE
Q psy11529          3 EVYSFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVW   82 (244)
Q Consensus         3 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw   82 (244)
                      ++++++.++|++++|+|++++|++++.|+.|++|++.+  +.++....+.+|...|.+++|+|++++|++++.|+.|++|
T Consensus         5 ~~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~--~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vw   82 (377)
T 3dwl_C            5 QVLHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDG--NGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVY   82 (377)
T ss_dssp             EEEEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEET--TEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC
T ss_pred             eeEecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccC--CceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEE
Confidence            67888899999999999999999999999999999987  5446778889999999999999999999999999999999


Q ss_pred             eeeCCCCC-ceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCE
Q psy11529         83 TQNNDDKK-WKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHL  161 (244)
Q Consensus        83 d~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~  161 (244)
                      |  +.++. ......+..|...+.+++|+|++++|++++.|+.|++||++..+..........+|...|.+++|+|++++
T Consensus        83 d--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  160 (377)
T 3dwl_C           83 E--KRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVL  160 (377)
T ss_dssp             --------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSE
T ss_pred             E--cCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCE
Confidence            9  66655 44456667799999999999999999999999999999999876322233343448899999999999999


Q ss_pred             EEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCC
Q psy11529        162 LGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQ  241 (244)
Q Consensus       162 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~  241 (244)
                      |++++.|+.|++||++............++.....++++..+ .|   ...|.+++|+|++++|++++.||.|++||+++
T Consensus       161 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~  236 (377)
T 3dwl_C          161 LAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PS---GGWVHAVGFSPSGNALAYAGHDSSVTIAYPSA  236 (377)
T ss_dssp             EEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CC---SSSEEEEEECTTSSCEEEEETTTEEC-CEECS
T ss_pred             EEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cC---CceEEEEEECCCCCEEEEEeCCCcEEEEECCC
Confidence            999999999999999776665555555555555567777777 77   89999999999999999999999999999876


Q ss_pred             C
Q psy11529        242 V  242 (244)
Q Consensus       242 ~  242 (244)
                      .
T Consensus       237 ~  237 (377)
T 3dwl_C          237 P  237 (377)
T ss_dssp             T
T ss_pred             C
Confidence            4

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=2.7e-40  Score=252.47  Aligned_cols=234  Identities=56%  Similarity=1.088  Sum_probs=203.1

Q ss_pred             ceeEEeCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEE
Q psy11529          2 AEVYSFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYV   81 (244)
Q Consensus         2 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i   81 (244)
                      .+++++|.++|++++|+|++++|++++.|+.|++|++.+  ++++....+.+|...|.+++|+|++++|++++.|+.|++
T Consensus         1 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~--~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~v   78 (372)
T 1k8k_C            1 MAYHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSG--NKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYV   78 (372)
T ss_dssp             -CEEESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEET--TEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEE
T ss_pred             CceecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCC--CcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEE
Confidence            368889999999999999999999999999999999987  533488889999999999999999999999999999999


Q ss_pred             EeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCE
Q psy11529         82 WTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHL  161 (244)
Q Consensus        82 wd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~  161 (244)
                      ||  +.+++.........+...+.+++|+|++++|++++.|+.+++||++.............+|...+.+++|+|++++
T Consensus        79 wd--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  156 (372)
T 1k8k_C           79 WT--LKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVL  156 (372)
T ss_dssp             EE--EETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSE
T ss_pred             EE--CCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCE
Confidence            99  6676655555556788999999999999999999999999999999987644455666778899999999999999


Q ss_pred             EEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCC
Q psy11529        162 LGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQ  241 (244)
Q Consensus       162 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~  241 (244)
                      |++++.||.|++||++............++.....++.+..+..|   ...|.+++|+|++++|++++.||.|++||+++
T Consensus       157 l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~  233 (372)
T 1k8k_C          157 LAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSS---CGWVHGVCFSANGSRVAWVSHDSTVCLADADK  233 (372)
T ss_dssp             EEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCC---SSCEEEEEECSSSSEEEEEETTTEEEEEEGGG
T ss_pred             EEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCC---CCeEEEEEECCCCCEEEEEeCCCEEEEEECCC
Confidence            999999999999998765554444444444444567888888888   89999999999999999999999999999976


Q ss_pred             C
Q psy11529        242 V  242 (244)
Q Consensus       242 ~  242 (244)
                      .
T Consensus       234 ~  234 (372)
T 1k8k_C          234 K  234 (372)
T ss_dssp             T
T ss_pred             C
Confidence            4

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=1.6e-40  Score=249.19  Aligned_cols=201  Identities=16%  Similarity=0.190  Sum_probs=181.9

Q ss_pred             eCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeC
Q psy11529          7 FGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNN   86 (244)
Q Consensus         7 ~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~   86 (244)
                      .+...+.+++|+|++++|++++.++.|++|++..  +  +....+..|...|.+++|+|++++|++++.|+.|++||  +
T Consensus       120 ~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~--~--~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd--~  193 (321)
T 3ow8_A          120 AGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVES--G--KKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFD--I  193 (321)
T ss_dssp             CCTTCCCCEEECTTSSEEEEECTTSEEEEEETTT--C--SEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEE--T
T ss_pred             CCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCC--C--ceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEE--C
Confidence            3567788999999999999999999999999987  4  56677888999999999999999999999999999999  7


Q ss_pred             CCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEee
Q psy11529         87 DDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGS  166 (244)
Q Consensus        87 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~  166 (244)
                      .+++.  ...+..|...|.+++|+|++++|++++.|+.|++||++....    ......|...|.+++|+|++++|++++
T Consensus       194 ~~~~~--~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~----~~~~~~h~~~v~~~~~sp~~~~l~s~s  267 (321)
T 3ow8_A          194 ATGKL--LHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANL----AGTLSGHASWVLNVAFCPDDTHFVSSS  267 (321)
T ss_dssp             TTTEE--EEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCE----EEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred             CCCcE--EEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcce----eEEEcCCCCceEEEEECCCCCEEEEEe
Confidence            77764  344567889999999999999999999999999999988764    456678889999999999999999999


Q ss_pred             CCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCC
Q psy11529        167 TDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQ  240 (244)
Q Consensus       167 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~  240 (244)
                      .|++|++||+                  .+++++..+.+|   ...|.+++|+|++++|++++.||.|++||+.
T Consensus       268 ~D~~v~iwd~------------------~~~~~~~~~~~h---~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p  320 (321)
T 3ow8_A          268 SDKSVKVWDV------------------GTRTCVHTFFDH---QDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP  320 (321)
T ss_dssp             TTSCEEEEET------------------TTTEEEEEECCC---SSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred             CCCcEEEEeC------------------CCCEEEEEEcCC---CCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence            9999999999                  678889999998   8999999999999999999999999999974

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=2.7e-40  Score=249.86  Aligned_cols=207  Identities=18%  Similarity=0.180  Sum_probs=169.4

Q ss_pred             CCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCC
Q psy11529          8 GINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNND   87 (244)
Q Consensus         8 ~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~   87 (244)
                      ++.+|.+++|+|++ .|++|+.||.|+|||+.+..........+.+|...|++++|+|++++|++|+.|++|++||  +.
T Consensus        81 ~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd--~~  157 (344)
T 4gqb_B           81 TEAGVADLTWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWD--LA  157 (344)
T ss_dssp             ESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEE--TT
T ss_pred             cCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEE--CC
Confidence            35789999999985 6789999999999999772111122234568999999999999999999999999999999  77


Q ss_pred             CCCceeeEEEeccCcceEEEEECCCCC-eEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCC-CCEEEEe
Q psy11529         88 DKKWKPTLVLLRINRAATCVKWSPLEN-KFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPN-NHLLGCG  165 (244)
Q Consensus        88 ~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~-~~~l~~~  165 (244)
                      +++.  ...+.+|...|.+++|+|++. +|++++.|++|++||+++.+.  ........+...+.+++|+|+ +++|++|
T Consensus       158 ~~~~--~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~p~~~~~l~sg  233 (344)
T 4gqb_B          158 QQVV--LSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKP--ASQIGCSAPGYLPTSLAWHPQQSEVFVFG  233 (344)
T ss_dssp             TTEE--EEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSC--EEECC----CCCEEEEEECSSCTTEEEEE
T ss_pred             CCcE--EEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccce--eeeeecceeeccceeeeecCCCCcceEEe
Confidence            7764  445578999999999999874 688999999999999998876  112222344567899999995 5689999


Q ss_pred             eCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCC-CEEEEeeCCCcEEEEeCCCC
Q psy11529        166 STDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDG-NKLCWTSHDGSINVRMSQQV  242 (244)
Q Consensus       166 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~vwd~~~~  242 (244)
                      +.||.|++||+                  .+++++..+.+|   ...|++++|+|++ ++|++|+.|++|+|||+++.
T Consensus       234 ~~dg~v~~wd~------------------~~~~~~~~~~~h---~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~  290 (344)
T 4gqb_B          234 DENGTVSLVDT------------------KSTSCVLSSAVH---SQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLS  290 (344)
T ss_dssp             ETTSEEEEEES------------------CC--CCEEEECC---SSCEEEEEECSSSSCCEEEEETTSCEEEECTTCC
T ss_pred             ccCCcEEEEEC------------------CCCcEEEEEcCC---CCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCC
Confidence            99999999999                  667888899999   9999999999998 58999999999999998753

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=3.4e-40  Score=247.41  Aligned_cols=204  Identities=17%  Similarity=0.227  Sum_probs=184.1

Q ss_pred             EeCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeee
Q psy11529          6 SFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQN   85 (244)
Q Consensus         6 ~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~   85 (244)
                      ..|...|.+++|+|++.++++++.|+.|++||+.+  +  +.+..+..|...+.+++|+|++++|++++.|+.|++||  
T Consensus        77 ~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~--~--~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~--  150 (321)
T 3ow8_A           77 EGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLEN--G--KQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFG--  150 (321)
T ss_dssp             CCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTT--T--EEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEE--
T ss_pred             ccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCC--C--CEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEE--
Confidence            34688999999999999999999999999999987  5  67788888999999999999999999999999999999  


Q ss_pred             CCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEe
Q psy11529         86 NDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCG  165 (244)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~  165 (244)
                      .++++.  ...+..+...+.+++|+|++++|++++.|+.|++||+++++.    ......|...|.+++|+|++++|+++
T Consensus       151 ~~~~~~--~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~----~~~~~~h~~~v~~l~~spd~~~l~s~  224 (321)
T 3ow8_A          151 VESGKK--EYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKL----LHTLEGHAMPIRSLTFSPDSQLLVTA  224 (321)
T ss_dssp             TTTCSE--EEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE----EEEECCCSSCCCEEEECTTSCEEEEE
T ss_pred             cCCCce--eEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcE----EEEEcccCCceeEEEEcCCCCEEEEE
Confidence            777764  344456788899999999999999999999999999988754    45567788999999999999999999


Q ss_pred             eCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCCC
Q psy11529        166 STDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQV  242 (244)
Q Consensus       166 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~  242 (244)
                      +.|+.|++||+                  ..++....+.+|   ...|.+++|+|++++|++++.|++|++||+++.
T Consensus       225 s~dg~i~iwd~------------------~~~~~~~~~~~h---~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~  280 (321)
T 3ow8_A          225 SDDGYIKIYDV------------------QHANLAGTLSGH---ASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTR  280 (321)
T ss_dssp             CTTSCEEEEET------------------TTCCEEEEECCC---SSCEEEEEECTTSSEEEEEETTSCEEEEETTTT
T ss_pred             cCCCeEEEEEC------------------CCcceeEEEcCC---CCceEEEEECCCCCEEEEEeCCCcEEEEeCCCC
Confidence            99999999999                  567788889998   899999999999999999999999999999763

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.6e-39  Score=244.80  Aligned_cols=212  Identities=19%  Similarity=0.338  Sum_probs=173.4

Q ss_pred             EEeCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeee-cc-CCCceEEEEeCCCCCeEEEEeCCccEEEE
Q psy11529          5 YSFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVL-DG-HDLKVTGIDWAPNTNRIVTCSADRNAYVW   82 (244)
Q Consensus         5 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~-~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~iw   82 (244)
                      +..|.++|.+++|+|+  +|++|+.|+.|++|++..  +.......+ .+ |...|.+++|+|++++|++++.|++|++|
T Consensus        10 ~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~--~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw   85 (330)
T 2hes_X           10 LKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKY--DDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIW   85 (330)
T ss_dssp             EECCSSCEEEEEEETT--EEEEEESSSCEEEEECSS--SCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             eccCCCceeeeccCCC--EEEEEcCCCEEEEEEecC--CCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEE
Confidence            4557899999999988  999999999999999976  333455555 44 99999999999999999999999999999


Q ss_pred             eeeCCCC-----CceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecC
Q psy11529         83 TQNNDDK-----KWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHP  157 (244)
Q Consensus        83 d~~~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p  157 (244)
                      |  ....     .......+.+|...|.+++|+|++++|++++.|++|++||++..............|...|.+++|+|
T Consensus        86 ~--~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p  163 (330)
T 2hes_X           86 A--KEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHP  163 (330)
T ss_dssp             E--C-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECS
T ss_pred             E--cccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECC
Confidence            9  4322     12234456789999999999999999999999999999999654322234556678889999999999


Q ss_pred             CCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecC--CCEEEEeeCCCcEE
Q psy11529        158 NNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKD--GNKLCWTSHDGSIN  235 (244)
Q Consensus       158 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~dg~i~  235 (244)
                      ++++|++++.|++|++||.+..                ..+++..+.+|   ...|.+++|+|+  +.+|++++.|++|+
T Consensus       164 ~~~~l~s~s~D~~i~iW~~~~~----------------~~~~~~~~~~h---~~~v~~~~~~~~~~~~~l~s~s~D~~v~  224 (330)
T 2hes_X          164 SEALLASSSYDDTVRIWKDYDD----------------DWECVAVLNGH---EGTVWSSDFDKTEGVFRLCSGSDDSTVR  224 (330)
T ss_dssp             SSSEEEEEETTSCEEEEEEETT----------------EEEEEEEECCC---SSCEEEEEECCSSSSCEEEEEETTSCEE
T ss_pred             CCCEEEEEcCCCeEEEEECCCC----------------CeeEEEEccCC---CCcEEEEEecCCCCeeEEEEEeCCCeEE
Confidence            9999999999999999998421                12577888898   899999999998  77899999999999


Q ss_pred             EEeCCC
Q psy11529        236 VRMSQQ  241 (244)
Q Consensus       236 vwd~~~  241 (244)
                      +||++.
T Consensus       225 iw~~~~  230 (330)
T 2hes_X          225 VWKYMG  230 (330)
T ss_dssp             EEEEEE
T ss_pred             EEEecC
Confidence            999853

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=6.4e-40  Score=247.89  Aligned_cols=205  Identities=12%  Similarity=0.199  Sum_probs=182.4

Q ss_pred             EeCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeee
Q psy11529          6 SFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQN   85 (244)
Q Consensus         6 ~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~   85 (244)
                      ..|.++|.+++|+|++++|++|+.||.|++||+.+  +  .....+..|...|.+++|+|++++|++++.|+.+++|+  
T Consensus        52 ~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~--~--~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~--  125 (340)
T 1got_B           52 RGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYT--T--NKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYN--  125 (340)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTT--C--CEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEE--
T ss_pred             cCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCC--C--CcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEE--
Confidence            34689999999999999999999999999999876  4  67778888999999999999999999999999999999  


Q ss_pred             CCCCC--ceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEE
Q psy11529         86 NDDKK--WKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLG  163 (244)
Q Consensus        86 ~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~  163 (244)
                      +.+..  ......+.+|...+.++.|++++. +++++.|+.|++||+++++.    ......|...|.+++|+|++++++
T Consensus       126 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~----~~~~~~h~~~v~~~~~~~~~~~l~  200 (340)
T 1got_B          126 LKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQ----TTTFTGHTGDVMSLSLAPDTRLFV  200 (340)
T ss_dssp             TTTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEE----EEEECCCSSCEEEEEECTTSSEEE
T ss_pred             CccCCCcceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcE----EEEEcCCCCceEEEEECCCCCEEE
Confidence            55543  233445678999999999998765 88999999999999988754    455678889999999999999999


Q ss_pred             EeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCCC
Q psy11529        164 CGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQV  242 (244)
Q Consensus       164 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~  242 (244)
                      +|+.|+.|++||+                  ..+++...+.+|   ...|.+++|+|++++|++++.||+|++||+++.
T Consensus       201 sg~~d~~v~~wd~------------------~~~~~~~~~~~h---~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~  258 (340)
T 1got_B          201 SGACDASAKLWDV------------------REGMCRQTFTGH---ESDINAICFFPNGNAFATGSDDATCRLFDLRAD  258 (340)
T ss_dssp             EEETTSCEEEEET------------------TTCSEEEEECCC---SSCEEEEEECTTSSEEEEEETTSCEEEEETTTT
T ss_pred             EEeCCCcEEEEEC------------------CCCeeEEEEcCC---cCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCC
Confidence            9999999999999                  667888889998   899999999999999999999999999999753

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=8.3e-40  Score=253.11  Aligned_cols=205  Identities=18%  Similarity=0.339  Sum_probs=185.7

Q ss_pred             EEeCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEee
Q psy11529          5 YSFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQ   84 (244)
Q Consensus         5 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~   84 (244)
                      +..|.+.|.+++|+|++++|++|+.|++|++||+.+  .  +.+..+.+|...|.+++|+|++++|++++.|++|++|| 
T Consensus       146 l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~--~--~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd-  220 (410)
T 1vyh_C          146 LKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQG--F--ECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWE-  220 (410)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTS--S--CEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEE-
T ss_pred             EeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC--C--ceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEE-
Confidence            345789999999999999999999999999999977  4  67888999999999999999999999999999999999 


Q ss_pred             eCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCC------
Q psy11529         85 NNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPN------  158 (244)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~------  158 (244)
                       +.++...  ..+.+|...+.++.|+|++.+|++++.|+.|++||+++...    ......|...|.+++|+|+      
T Consensus       221 -~~~~~~~--~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~----~~~~~~h~~~v~~~~~~~~~~~~~~  293 (410)
T 1vyh_C          221 -VQTGYCV--KTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKEC----KAELREHRHVVECISWAPESSYSSI  293 (410)
T ss_dssp             -TTTCCEE--EEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE----EEEECCCSSCEEEEEECCSCGGGGG
T ss_pred             -CCCCcEE--EEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCce----eeEecCCCceEEEEEEcCcccccch
Confidence             7777643  44567899999999999999999999999999999988764    4556778899999999996      


Q ss_pred             --------------CCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCE
Q psy11529        159 --------------NHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNK  224 (244)
Q Consensus       159 --------------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~  224 (244)
                                    +.+|++|+.|+.|++||+                  ..++++..+.+|   ...|.+++|+|+|++
T Consensus       294 ~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~------------------~~~~~~~~~~~h---~~~v~~v~~~~~g~~  352 (410)
T 1vyh_C          294 SEATGSETKKSGKPGPFLLSGSRDKTIKMWDV------------------STGMCLMTLVGH---DNWVRGVLFHSGGKF  352 (410)
T ss_dssp             GGCCSCC-------CCEEEEEETTSEEEEEET------------------TTTEEEEEEECC---SSCEEEEEECSSSSC
T ss_pred             hhhccccccccCCCCCEEEEEeCCCeEEEEEC------------------CCCceEEEEECC---CCcEEEEEEcCCCCE
Confidence                          668999999999999999                  678888999998   899999999999999


Q ss_pred             EEEeeCCCcEEEEeCCCC
Q psy11529        225 LCWTSHDGSINVRMSQQV  242 (244)
Q Consensus       225 l~~~~~dg~i~vwd~~~~  242 (244)
                      |++++.||.|++||+++.
T Consensus       353 l~s~s~D~~i~vwd~~~~  370 (410)
T 1vyh_C          353 ILSCADDKTLRVWDYKNK  370 (410)
T ss_dssp             EEEEETTTEEEEECCTTS
T ss_pred             EEEEeCCCeEEEEECCCC
Confidence            999999999999999764

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=5.8e-40  Score=253.97  Aligned_cols=205  Identities=17%  Similarity=0.229  Sum_probs=184.5

Q ss_pred             EEeCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEee
Q psy11529          5 YSFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQ   84 (244)
Q Consensus         5 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~   84 (244)
                      ...|.++|++++|+|++++|++|+.|+.|+|||+.+  +  +....+.+|...|.+++|+|++++|++|+.|++|++|| 
T Consensus       104 l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~--~--~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd-  178 (410)
T 1vyh_C          104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYET--G--DFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWD-  178 (410)
T ss_dssp             EECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTT--C--CCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEE-
T ss_pred             ecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC--C--cEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEe-
Confidence            345789999999999999999999999999999987  5  66788999999999999999999999999999999999 


Q ss_pred             eCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEE
Q psy11529         85 NNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGC  164 (244)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~  164 (244)
                       +.+++.  ...+.+|...|.+++|+|++++|++++.|++|++||++++..    ......|...+.++.|+|++++|++
T Consensus       179 -~~~~~~--~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~----~~~~~~h~~~v~~~~~~~~g~~l~s  251 (410)
T 1vyh_C          179 -FQGFEC--IRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYC----VKTFTGHREWVRMVRPNQDGTLIAS  251 (410)
T ss_dssp             -TTSSCE--EECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCE----EEEEECCSSCEEEEEECTTSSEEEE
T ss_pred             -CCCCce--eEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcE----EEEEeCCCccEEEEEECCCCCEEEE
Confidence             666653  334467899999999999999999999999999999998864    4556678899999999999999999


Q ss_pred             eeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecC--------------------CCE
Q psy11529        165 GSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKD--------------------GNK  224 (244)
Q Consensus       165 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--------------------~~~  224 (244)
                      |+.|+.|++||+                  ..+++...+..|   ...|.+++|+|+                    |.+
T Consensus       252 ~s~D~~v~vwd~------------------~~~~~~~~~~~h---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  310 (410)
T 1vyh_C          252 CSNDQTVRVWVV------------------ATKECKAELREH---RHVVECISWAPESSYSSISEATGSETKKSGKPGPF  310 (410)
T ss_dssp             EETTSCEEEEET------------------TTCCEEEEECCC---SSCEEEEEECCSCGGGGGGGCCSCC-------CCE
T ss_pred             EcCCCeEEEEEC------------------CCCceeeEecCC---CceEEEEEEcCcccccchhhhccccccccCCCCCE
Confidence            999999999999                  667788888888   899999999996                    678


Q ss_pred             EEEeeCCCcEEEEeCCCC
Q psy11529        225 LCWTSHDGSINVRMSQQV  242 (244)
Q Consensus       225 l~~~~~dg~i~vwd~~~~  242 (244)
                      |++|+.|+.|++||+++.
T Consensus       311 l~sgs~D~~i~iwd~~~~  328 (410)
T 1vyh_C          311 LLSGSRDKTIKMWDVSTG  328 (410)
T ss_dssp             EEEEETTSEEEEEETTTT
T ss_pred             EEEEeCCCeEEEEECCCC
Confidence            999999999999999753

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=1.6e-40  Score=248.80  Aligned_cols=214  Identities=18%  Similarity=0.349  Sum_probs=177.4

Q ss_pred             EEeCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCC--CCCeEEEEeCCccEEEE
Q psy11529          5 YSFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAP--NTNRIVTCSADRNAYVW   82 (244)
Q Consensus         5 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~iw   82 (244)
                      ...|.++|++++|+|+|++||+|+.|++|+|||+..  +....+..+.+|...|.+++|+|  ++++|++++.|++|++|
T Consensus         9 ~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~--~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iW   86 (316)
T 3bg1_A            9 DTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRN--GGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIW   86 (316)
T ss_dssp             -----CCEEEEEECGGGCEEEEEETTTEEEEEEEET--TEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEE
T ss_pred             cccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecC--CCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEE
Confidence            345789999999999999999999999999999976  43345678899999999999986  48999999999999999


Q ss_pred             eeeCCCCCceeeEEEeccCcceEEEEECCC--CCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCC--
Q psy11529         83 TQNNDDKKWKPTLVLLRINRAATCVKWSPL--ENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPN--  158 (244)
Q Consensus        83 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~--  158 (244)
                      |  .+++.......+.+|...|.+++|+|+  +.+|++++.|+.|++||++.... +........|...+.+++|+|+  
T Consensus        87 d--~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~  163 (316)
T 3bg1_A           87 R--EENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQ-WEVKKINNAHTIGCNAVSWAPAVV  163 (316)
T ss_dssp             C--CSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSC-EEECCBTTSSSSCBCCCEECCCCC
T ss_pred             E--CCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCC-cceeeeeccccCCcceEEEccccC
Confidence            9  677654455566789999999999998  78999999999999999987643 1223445678889999999997  


Q ss_pred             ---------------CCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCC-
Q psy11529        159 ---------------NHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDG-  222 (244)
Q Consensus       159 ---------------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-  222 (244)
                                     +++|++|+.|+.|++||++..               ...+.+..+.+|   ...|.+++|+|++ 
T Consensus       164 ~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~---------------~~~~~~~~l~~h---~~~V~~v~~sp~~~  225 (316)
T 3bg1_A          164 PGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEED---------------GQWKEEQKLEAH---SDWVRDVAWAPSIG  225 (316)
T ss_dssp             C------CCSCCCCCCCBEECCBTTSBCCEEEECTT---------------SCEEEEECCBCC---SSCEEEEECCCCSS
T ss_pred             CccccccccccCccccceEEEecCCCeEEEEEeCCC---------------CccceeeecccC---CCceEEEEecCCCC
Confidence                           478999999999999998311               012456678888   8999999999987 


Q ss_pred             ---CEEEEeeCCCcEEEEeCCC
Q psy11529        223 ---NKLCWTSHDGSINVRMSQQ  241 (244)
Q Consensus       223 ---~~l~~~~~dg~i~vwd~~~  241 (244)
                         ++|++++.|++|++|++++
T Consensus       226 ~~~~~las~s~D~~v~iw~~~~  247 (316)
T 3bg1_A          226 LPTSTIASCSQDGRVFIWTCDD  247 (316)
T ss_dssp             CSCCEEEEEETTCEEEEEECSS
T ss_pred             CCCceEEEEcCCCeEEEEEccC
Confidence               7999999999999999875

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=3.1e-40  Score=251.08  Aligned_cols=202  Identities=17%  Similarity=0.268  Sum_probs=176.2

Q ss_pred             CCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCC-eEEEEeCCccEEEEeeeC
Q psy11529          8 GINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTN-RIVTCSADRNAYVWTQNN   86 (244)
Q Consensus         8 ~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~   86 (244)
                      |.+.|++++|+|++++|++|+.|+.|++||+.+  +  +.+..+.+|...|.+++|+|++. ++++++.|+.|++||  +
T Consensus       138 h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~--~--~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd--~  211 (357)
T 4g56_B          138 HDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQ--K--AVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWD--T  211 (357)
T ss_dssp             CSSCEEEEEECSSSSEEEEEETTSCEEEEETTT--T--EEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECC--T
T ss_pred             CCCCEEEEEECCCCCEEEEEeCCCeEEEEECCC--C--cEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEE--C
Confidence            578999999999999999999999999999987  5  78888999999999999999875 788999999999999  7


Q ss_pred             CCCCceeeEEEeccCcceEEEEECCC-CCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCC-CEEEE
Q psy11529         87 DDKKWKPTLVLLRINRAATCVKWSPL-ENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNN-HLLGC  164 (244)
Q Consensus        87 ~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~l~~  164 (244)
                      ++++.........+...+.+++|+|+ +.+|++++.|+.|++||+++.+.    ......|...|++++|+|++ ++|++
T Consensus       212 ~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~----~~~~~~~~~~v~~l~~sp~~~~~las  287 (357)
T 4g56_B          212 RKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDS----AQTSAVHSQNITGLAYSYHSSPFLAS  287 (357)
T ss_dssp             TSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGG----CEEECCCSSCEEEEEECSSSSCCEEE
T ss_pred             CCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcE----eEEEeccceeEEEEEEcCCCCCEEEE
Confidence            77765555555567788999999997 56789999999999999998875    44556788999999999987 58999


Q ss_pred             eeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEec-CCCEEEEeeCCCcEEEEeCCC
Q psy11529        165 GSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSK-DGNKLCWTSHDGSINVRMSQQ  241 (244)
Q Consensus       165 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vwd~~~  241 (244)
                      |+.|++|+|||+                  .+++.+.. .+|   ...|++++|+| ++++|++++.||+|++|++..
T Consensus       288 gs~D~~i~iwd~------------------~~~~~~~~-~~H---~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~  343 (357)
T 4g56_B          288 ISEDCTVAVLDA------------------DFSEVFRD-LSH---RDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPS  343 (357)
T ss_dssp             EETTSCEEEECT------------------TSCEEEEE-CCC---SSCEEEEEECSSSTTEEEEEETTSCEEEEECC-
T ss_pred             EeCCCEEEEEEC------------------CCCcEeEE-CCC---CCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCC
Confidence            999999999998                  55666554 467   89999999999 899999999999999999865

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=6e-40  Score=250.12  Aligned_cols=204  Identities=10%  Similarity=-0.005  Sum_probs=170.3

Q ss_pred             CCceEEEEEcCCCCeEEEe--cCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeC
Q psy11529          9 INPVTTHAWNNTRQQLAFT--PNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNN   86 (244)
Q Consensus         9 ~~~v~~~~~~~~~~~l~~~--~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~   86 (244)
                      ...+.+++|||||++++++  +.|++|+|||+.+  +  +++..+. |...|.+++|+|+|+++++++.+ .+.+|+  .
T Consensus       133 ~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~--~--~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~-~~~~~~--~  204 (365)
T 4h5i_A          133 DDYTKLVYISREGTVAAIASSKVPAIMRIIDPSD--L--TEKFEIE-TRGEVKDLHFSTDGKVVAYITGS-SLEVIS--T  204 (365)
T ss_dssp             TCCEEEEEECTTSSCEEEEESCSSCEEEEEETTT--T--EEEEEEE-CSSCCCEEEECTTSSEEEEECSS-CEEEEE--T
T ss_pred             ccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCC--C--cEEEEeC-CCCceEEEEEccCCceEEeccce-eEEEEE--e
Confidence            3458899999999997654  4789999999987  4  5666665 78889999999999999999855 566777  5


Q ss_pred             CCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCC----eEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEE
Q psy11529         87 DDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGAR----LISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLL  162 (244)
Q Consensus        87 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~----~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l  162 (244)
                      .++..........|...+.+++|+|+++++++++.|+    .+++|++...............|...|++++|+|+|++|
T Consensus       205 ~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~l  284 (365)
T 4h5i_A          205 VTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELA  284 (365)
T ss_dssp             TTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEE
T ss_pred             ccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCce
Confidence            6666544444456788899999999999999998877    678888877654333344566788899999999999999


Q ss_pred             EEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEe-cCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCC
Q psy11529        163 GCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVEL-NNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQ  241 (244)
Q Consensus       163 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~  241 (244)
                      |+|+.|++|+|||+                  .+++++..+ .+|   ...|++++|+|||++|+++|.|++|+|||+..
T Consensus       285 asgs~D~~V~iwd~------------------~~~~~~~~~~~gH---~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~  343 (365)
T 4h5i_A          285 VLASNDNSIALVKL------------------KDLSMSKIFKQAH---SFAITEVTISPDSTYVASVSAANTIHIIKLPL  343 (365)
T ss_dssp             EEEETTSCEEEEET------------------TTTEEEEEETTSS---SSCEEEEEECTTSCEEEEEETTSEEEEEECCT
T ss_pred             EEEcCCCEEEEEEC------------------CCCcEEEEecCcc---cCCEEEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence            99999999999999                  678888875 678   99999999999999999999999999999964

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=4e-39  Score=243.97  Aligned_cols=224  Identities=22%  Similarity=0.355  Sum_probs=183.0

Q ss_pred             eCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeC
Q psy11529          7 FGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNN   86 (244)
Q Consensus         7 ~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~   86 (244)
                      .|.+.|.+++|+|++++|++|+.|+.+++|++..  +..+....+.+|...|.+++|+|++++|++++.|++|++||  +
T Consensus        59 ~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~--~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd--~  134 (345)
T 3fm0_A           59 GHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQ--DDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWE--V  134 (345)
T ss_dssp             SCSSCEEEEEECTTSSEEEEEETTSCEEEEEECC--C-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEE--E
T ss_pred             ccCCcEEEEEECCCCCEEEEEECCCcEEEEEccC--CCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEE--C
Confidence            3678999999999999999999999999999977  44467788999999999999999999999999999999999  5


Q ss_pred             CCCC-ceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEe
Q psy11529         87 DDKK-WKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCG  165 (244)
Q Consensus        87 ~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~  165 (244)
                      ..+. ......+..|...|.+++|+|++++|++++.|+.|++||.+....  .......+|...|.+++|+|++++|+++
T Consensus       135 ~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~--~~~~~~~~h~~~v~~l~~sp~g~~l~s~  212 (345)
T 3fm0_A          135 DEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDW--VCCATLEGHESTVWSLAFDPSGQRLASC  212 (345)
T ss_dssp             CTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEE--EEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred             CCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCE--EEEEEecCCCCceEEEEECCCCCEEEEE
Confidence            5443 233445567889999999999999999999999999999987643  3345667889999999999999999999


Q ss_pred             eCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCC
Q psy11529        166 STDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQ  241 (244)
Q Consensus       166 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~  241 (244)
                      +.|++|++||.+........   .........+++..+.+.+  ...|.+++|+|++..|++++.|+.|++|+.+.
T Consensus       213 s~D~~v~iW~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~h--~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~  283 (345)
T 3fm0_A          213 SDDRTVRIWRQYLPGNEQGV---ACSGSDPSWKCICTLSGFH--SRTIYDIAWCQLTGALATACGDDAIRVFQEDP  283 (345)
T ss_dssp             ETTSCEEEEEEECTTCTTCC---CCC---CEEEEEEEECSSC--SSCEEEEEECTTTCCEEEEETTSCEEEEEECT
T ss_pred             eCCCeEEEeccccCCCCccc---eeeccCCccceeEEecCCC--CCcEEEEEEecCCCEEEEEeCCCeEEEEEeCC
Confidence            99999999997533211100   0001112335566666632  88999999999999999999999999999764

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=1.8e-39  Score=245.42  Aligned_cols=201  Identities=17%  Similarity=0.257  Sum_probs=176.0

Q ss_pred             EeCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeee
Q psy11529          6 SFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQN   85 (244)
Q Consensus         6 ~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~   85 (244)
                      ..|.+.|.++.|++++. +++++.|+.|++||+..  +  +....+.+|...|.+++|+|+++++++|+.|+.|++||  
T Consensus       140 ~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~--~--~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd--  212 (340)
T 1got_B          140 AGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIET--G--QQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWD--  212 (340)
T ss_dssp             ECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTT--T--EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEE--
T ss_pred             cCCCccEEEEEECCCCc-EEEEECCCcEEEEECCC--C--cEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEE--
Confidence            34678999999998875 88889999999999987  5  77888999999999999999999999999999999999  


Q ss_pred             CCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEe
Q psy11529         86 NDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCG  165 (244)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~  165 (244)
                      +.++..  ...+..|...|.+++|+|++++|++++.|+.|++||++..+.  ........+...+.+++|+|+|++|++|
T Consensus       213 ~~~~~~--~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~--~~~~~~~~~~~~v~~~~~s~~g~~l~~g  288 (340)
T 1got_B          213 VREGMC--RQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQE--LMTYSHDNIICGITSVSFSKSGRLLLAG  288 (340)
T ss_dssp             TTTCSE--EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE--EEEECCTTCCSCEEEEEECTTSSEEEEE
T ss_pred             CCCCee--EEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcE--EEEEccCCcccceEEEEECCCCCEEEEE
Confidence            777664  344567899999999999999999999999999999988754  1111122334579999999999999999


Q ss_pred             eCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEe
Q psy11529        166 STDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRM  238 (244)
Q Consensus       166 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd  238 (244)
                      +.||.|++||+                  ..++.+..+.+|   ...|.+++|+|+|++|++|+.||.|+|||
T Consensus       289 ~~d~~i~vwd~------------------~~~~~~~~~~~h---~~~v~~~~~s~dg~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          289 YDDFNCNVWDA------------------LKADRAGVLAGH---DNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             ETTSEEEEEET------------------TTCCEEEEEECC---SSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             CCCCeEEEEEc------------------ccCcEeeEeecC---CCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence            99999999998                  667788889999   99999999999999999999999999997

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=6.7e-39  Score=239.58  Aligned_cols=205  Identities=16%  Similarity=0.278  Sum_probs=181.1

Q ss_pred             EeCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeee
Q psy11529          6 SFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQN   85 (244)
Q Consensus         6 ~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~   85 (244)
                      ..|.++|++++|+|++++|++++.|+.|++|++.+  +  +....+.+|...|.+++|+|++++|++++.|+.|++||  
T Consensus        20 ~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~--~--~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd--   93 (312)
T 4ery_A           20 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD--G--KFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD--   93 (312)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT--C--CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEE--
T ss_pred             cccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCC--c--ccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEE--
Confidence            34689999999999999999999999999999976  4  66778889999999999999999999999999999999  


Q ss_pred             CCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEe
Q psy11529         86 NDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCG  165 (244)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~  165 (244)
                      +.+++..  ..+..|...+.+++|+|++++|++++.|+.|++||+++.+.    ......|...+.+++|+|++++|+++
T Consensus        94 ~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~  167 (312)
T 4ery_A           94 VSSGKCL--KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC----LKTLPAHSDPVSAVHFNRDGSLIVSS  167 (312)
T ss_dssp             TTTCCEE--EEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCE----EEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred             CCCCcEE--EEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEE----EEEecCCCCcEEEEEEcCCCCEEEEE
Confidence            7777643  44567899999999999999999999999999999988764    45556788899999999999999999


Q ss_pred             eCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCCC
Q psy11529        166 STDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQV  242 (244)
Q Consensus       166 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~  242 (244)
                      +.||.|++||+                  ..++.+..+..++  ...+..++|+|++++|++++.||.|++||+++.
T Consensus       168 ~~d~~i~~wd~------------------~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~  224 (312)
T 4ery_A          168 SYDGLCRIWDT------------------ASGQCLKTLIDDD--NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG  224 (312)
T ss_dssp             ETTSCEEEEET------------------TTCCEEEEECCSS--CCCEEEEEECTTSSEEEEEETTTEEEEEETTTT
T ss_pred             eCCCcEEEEEC------------------CCCceeeEEeccC--CCceEEEEECCCCCEEEEEcCCCeEEEEECCCC
Confidence            99999999998                  5566666654432  678999999999999999999999999999753

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=4.7e-39  Score=244.34  Aligned_cols=202  Identities=21%  Similarity=0.348  Sum_probs=177.4

Q ss_pred             EeCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCC--CCCeEEEEeCCccEEEEe
Q psy11529          6 SFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAP--NTNRIVTCSADRNAYVWT   83 (244)
Q Consensus         6 ~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~iwd   83 (244)
                      ..|.+.|.+++|+|++..|++++.|++|++||++.  +  +.+..+.+|...|.+++|+|  ++++|++|+.|+.|++||
T Consensus       151 ~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~--~--~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd  226 (354)
T 2pbi_B          151 AMHTNYLSACSFTNSDMQILTASGDGTCALWDVES--G--QLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWD  226 (354)
T ss_dssp             EECSSCEEEEEECSSSSEEEEEETTSEEEEEETTT--C--CEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEE
T ss_pred             eccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCC--C--eEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEE
Confidence            45788999999999999999999999999999987  5  67888999999999999988  578999999999999999


Q ss_pred             eeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEE
Q psy11529         84 QNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLG  163 (244)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~  163 (244)
                        +++++.  ...+..|...|.+++|+|++++|++++.|++|++||++....  ........+...+.+++|+|++++|+
T Consensus       227 --~~~~~~--~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~--~~~~~~~~~~~~~~~~~~s~~g~~l~  300 (354)
T 2pbi_B          227 --MRSGQC--VQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADRE--VAIYSKESIIFGASSVDFSLSGRLLF  300 (354)
T ss_dssp             --TTTCCE--EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE--EEEECCTTCCSCEEEEEECTTSSEEE
T ss_pred             --CCCCcE--EEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcE--EEEEcCCCcccceeEEEEeCCCCEEE
Confidence              777764  334567899999999999999999999999999999988753  11111222345789999999999999


Q ss_pred             EeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEe
Q psy11529        164 CGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRM  238 (244)
Q Consensus       164 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd  238 (244)
                      +|+.|+.|++||+                  ..++.+..+.+|   ...|++++|+|||++|++|+.||+|++|+
T Consensus       301 ~g~~d~~i~vwd~------------------~~~~~~~~l~~h---~~~v~~l~~spdg~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          301 AGYNDYTINVWDV------------------LKGSRVSILFGH---ENRVSTLRVSPDGTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             EEETTSCEEEEET------------------TTCSEEEEECCC---SSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred             EEECCCcEEEEEC------------------CCCceEEEEECC---CCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence            9999999999998                  667888889898   99999999999999999999999999996

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=7.2e-39  Score=240.10  Aligned_cols=208  Identities=13%  Similarity=0.095  Sum_probs=180.7

Q ss_pred             EEeCCCceEEEEEcCCC-CeEEEecCCCeEEEeeeccCCCc-ceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEE
Q psy11529          5 YSFGINPVTTHAWNNTR-QQLAFTPNNQEVHLYQYEKAAND-WSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVW   82 (244)
Q Consensus         5 ~~~~~~~v~~~~~~~~~-~~l~~~~~d~~v~v~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw   82 (244)
                      +..|.++|.+++|+|++ ++|++|+.|++|++|++...... ..++..+.+|...|.+++|+|++++|++++.|++|++|
T Consensus        13 l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~w   92 (319)
T 3frx_A           13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLW   92 (319)
T ss_dssp             ECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred             EccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEE
Confidence            34579999999999965 89999999999999998642111 13567889999999999999999999999999999999


Q ss_pred             eeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCC----
Q psy11529         83 TQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPN----  158 (244)
Q Consensus        83 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~----  158 (244)
                      |  +.+++.  ...+.+|...|.+++|+|++.+|++++.|++|++||++..     .......|...+.++.|+|.    
T Consensus        93 d--~~~~~~--~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~-----~~~~~~~h~~~v~~~~~~~~~~~~  163 (319)
T 3frx_A           93 D--VATGET--YQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQ-----CLATLLGHNDWVSQVRVVPNEKAD  163 (319)
T ss_dssp             E--TTTTEE--EEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSC-----EEEEECCCSSCEEEEEECCC----
T ss_pred             E--CCCCCe--eEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-----eEEEEeccCCcEEEEEEccCCCCC
Confidence            9  777764  3445689999999999999999999999999999998754     24556778899999999985    


Q ss_pred             --CCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEE
Q psy11529        159 --NHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINV  236 (244)
Q Consensus       159 --~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v  236 (244)
                        +..+++++.|+.|++||+                  ...+....+.+|   ...|.+++|+|+|++|++++.||.|++
T Consensus       164 ~~~~~l~s~~~d~~i~~wd~------------------~~~~~~~~~~~h---~~~v~~~~~sp~g~~l~s~~~dg~i~i  222 (319)
T 3frx_A          164 DDSVTIISAGNDKMVKAWNL------------------NQFQIEADFIGH---NSNINTLTASPDGTLIASAGKDGEIML  222 (319)
T ss_dssp             --CCEEEEEETTSCEEEEET------------------TTTEEEEEECCC---CSCEEEEEECTTSSEEEEEETTCEEEE
T ss_pred             CCccEEEEEeCCCEEEEEEC------------------CcchhheeecCC---CCcEEEEEEcCCCCEEEEEeCCCeEEE
Confidence              448999999999999999                  567778888888   999999999999999999999999999


Q ss_pred             EeCCCC
Q psy11529        237 RMSQQV  242 (244)
Q Consensus       237 wd~~~~  242 (244)
                      ||+++.
T Consensus       223 wd~~~~  228 (319)
T 3frx_A          223 WNLAAK  228 (319)
T ss_dssp             EETTTT
T ss_pred             EECCCC
Confidence            999764

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=1.3e-38  Score=236.50  Aligned_cols=214  Identities=17%  Similarity=0.286  Sum_probs=176.0

Q ss_pred             EEeCCCceEEEEEcCC--CCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCC--CCeEEEEeCCccEE
Q psy11529          5 YSFGINPVTTHAWNNT--RQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPN--TNRIVTCSADRNAY   80 (244)
Q Consensus         5 ~~~~~~~v~~~~~~~~--~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~   80 (244)
                      +..|.++|.+++|+|+  +++|++|+.|++|++||+..  +....+..+.+|...|.+++|+|+  +.+|++++.|+.|+
T Consensus        49 l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~--~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~  126 (297)
T 2pm7_B           49 LTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEEN--GRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVS  126 (297)
T ss_dssp             ECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSS--SCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEE
T ss_pred             EccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCC--CceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEE
Confidence            3457899999999864  89999999999999999987  444566778889999999999997  88999999999999


Q ss_pred             EEeeeCCCCCceeeEEEeccCcceEEEEECCC-------------CCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCC
Q psy11529         81 VWTQNNDDKKWKPTLVLLRINRAATCVKWSPL-------------ENKFAAGSGARLISVCYFESENDWWVAKHIKKPIK  147 (244)
Q Consensus        81 iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-------------~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~  147 (244)
                      +||  +.++.......+..|...+.+++|+|+             +++|++++.|+.|++||++..............|.
T Consensus       127 ~wd--~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~  204 (297)
T 2pm7_B          127 VVE--FKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHS  204 (297)
T ss_dssp             EEE--BCSSSCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCS
T ss_pred             EEE--ecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCC
Confidence            999  555432223455788999999999997             47899999999999999998765344455677899


Q ss_pred             CceeEEEecCCC---CEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEe--cCCCCCCCCeEEEEEecCC
Q psy11529        148 STITCLDWHPNN---HLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVEL--NNSSSGGGWIHSVAFSKDG  222 (244)
Q Consensus       148 ~~v~~~~~~p~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~s~~~  222 (244)
                      ..|.+++|+|++   ++|++++.|++|++||++....               ......+  ..|   ...|.+++|+|+|
T Consensus       205 ~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~---------------~~~~~~~~~~~~---~~~v~~~~~s~~g  266 (297)
T 2pm7_B          205 DWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQG---------------PWKKTLLKEEKF---PDVLWRASWSLSG  266 (297)
T ss_dssp             SCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTS---------------CCEEEESSSSCC---SSCEEEEEECSSS
T ss_pred             CceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCC---------------ccceeeeecccC---CCcEEEEEECCCC
Confidence            999999999985   7999999999999999842110               0011222  345   7889999999999


Q ss_pred             CEEEEeeCCCcEEEEeCC
Q psy11529        223 NKLCWTSHDGSINVRMSQ  240 (244)
Q Consensus       223 ~~l~~~~~dg~i~vwd~~  240 (244)
                      ++|++++.||.|++|+..
T Consensus       267 ~~las~~~D~~v~lw~~~  284 (297)
T 2pm7_B          267 NVLALSGGDNKVTLWKEN  284 (297)
T ss_dssp             CCEEEEETTSCEEEEEEC
T ss_pred             CEEEEEcCCCcEEEEEEC
Confidence            999999999999999976

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=6.7e-39  Score=242.17  Aligned_cols=236  Identities=19%  Similarity=0.266  Sum_probs=186.5

Q ss_pred             ceeEEeCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCC--CCCeEEEEeCCccE
Q psy11529          2 AEVYSFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAP--NTNRIVTCSADRNA   79 (244)
Q Consensus         2 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i   79 (244)
                      ..+...|.+.|++++|+|++++|++|+.||.|++|++.......+....+.+|...|.+++|+|  ++++|++++.|+.|
T Consensus         4 ~~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v   83 (351)
T 3f3f_A            4 QPFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTV   83 (351)
T ss_dssp             CCEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred             cccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeE
Confidence            3566778999999999999999999999999999999863333456778889999999999999  69999999999999


Q ss_pred             EEEeeeCCCCCc-------eeeEEEeccCcceEEEEECCC--CCeEEEeeCCCeEEEEEeecCCCce-------------
Q psy11529         80 YVWTQNNDDKKW-------KPTLVLLRINRAATCVKWSPL--ENKFAAGSGARLISVCYFESENDWW-------------  137 (244)
Q Consensus        80 ~iwd~~~~~~~~-------~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~-------------  137 (244)
                      ++||  +.++..       .....+..|...+.+++|+|+  +++|++++.|+.|++||+++.+...             
T Consensus        84 ~vwd--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~  161 (351)
T 3f3f_A           84 KLWE--EDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSI  161 (351)
T ss_dssp             EEEE--ECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSC
T ss_pred             EEEe--cCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccccccccccc
Confidence            9999  555421       334556678999999999999  9999999999999999987654210             


Q ss_pred             -------------------------------------------EEEeeecCCCCceeEEEecCCC----CEEEEeeCCCe
Q psy11529        138 -------------------------------------------VAKHIKKPIKSTITCLDWHPNN----HLLGCGSTDFK  170 (244)
Q Consensus       138 -------------------------------------------~~~~~~~~~~~~v~~~~~~p~~----~~l~~~~~dg~  170 (244)
                                                                 ........|...|++++|+|++    ++|++++.||.
T Consensus       162 ~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~  241 (351)
T 3f3f_A          162 PPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGR  241 (351)
T ss_dssp             CCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSC
T ss_pred             ccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCe
Confidence                                                       1123344678899999999998    89999999999


Q ss_pred             EEEEEeeecccccCCCCCC----------------------------CCccccccceeEEecCCCCCCCCeEEEEEecCC
Q psy11529        171 VRVFSAYIKDIESAPQSTN----------------------------WGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDG  222 (244)
Q Consensus       171 i~i~d~~~~~~~~~~~~~~----------------------------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~  222 (244)
                      |++||++............                            ........+.+..+.+|   ...|++++|+|++
T Consensus       242 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h---~~~v~~~~~s~~~  318 (351)
T 3f3f_A          242 IRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDH---NGEVWSVSWNLTG  318 (351)
T ss_dssp             EEEEEEEECC---------------------------------------CCSEEEEEEEEECTT---SSCEEEEEECSSS
T ss_pred             EEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecc---cccEEEEEEcCCC
Confidence            9999997542211100000                            00011234667778888   8999999999999


Q ss_pred             CEEEEeeCCCcEEEEeCCCC
Q psy11529        223 NKLCWTSHDGSINVRMSQQV  242 (244)
Q Consensus       223 ~~l~~~~~dg~i~vwd~~~~  242 (244)
                      ++|++++.||.|++||+++.
T Consensus       319 ~~l~s~~~dg~v~iw~~~~~  338 (351)
T 3f3f_A          319 TILSSAGDDGKVRLWKATYS  338 (351)
T ss_dssp             CCEEEEETTSCEEEEEECTT
T ss_pred             CEEEEecCCCcEEEEecCcC
Confidence            99999999999999999853

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=1.1e-38  Score=239.13  Aligned_cols=224  Identities=15%  Similarity=0.152  Sum_probs=176.9

Q ss_pred             EEeCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEee
Q psy11529          5 YSFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQ   84 (244)
Q Consensus         5 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~   84 (244)
                      +..|...|.+++|+|++++|++|+.|++|++||+.+  +  +....+.+|...|.+++|+|++.+|++++.|++|++|| 
T Consensus        61 ~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~--~--~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd-  135 (319)
T 3frx_A           61 FKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVAT--G--ETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWT-  135 (319)
T ss_dssp             EECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT--T--EEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEE-
T ss_pred             EeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCC--C--CeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEE-
Confidence            345789999999999999999999999999999987  5  77888999999999999999999999999999999999 


Q ss_pred             eCCCCCceeeEEEeccCcceEEEEECCC------CCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCC
Q psy11529         85 NNDDKKWKPTLVLLRINRAATCVKWSPL------ENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPN  158 (244)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~------~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~  158 (244)
                       ++..   ....+.+|...+.+++|+|.      +..+++++.|+.|++||++..+.    ......|...|.+++|+|+
T Consensus       136 -~~~~---~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~----~~~~~~h~~~v~~~~~sp~  207 (319)
T 3frx_A          136 -IKGQ---CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQI----EADFIGHNSNINTLTASPD  207 (319)
T ss_dssp             -TTSC---EEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEE----EEEECCCCSCEEEEEECTT
T ss_pred             -CCCC---eEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchh----heeecCCCCcEEEEEEcCC
Confidence             5533   24455788999999999995      44899999999999999987653    4556788999999999999


Q ss_pred             CCEEEEeeCCCeEEEEEeeecccccCCCCCC------CCc----------------cccccceeEEecCCC-----CCCC
Q psy11529        159 NHLLGCGSTDFKVRVFSAYIKDIESAPQSTN------WGS----------------KSTLGNCLVELNNSS-----SGGG  211 (244)
Q Consensus       159 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~------~~~----------------~~~~~~~~~~~~~~~-----~~~~  211 (244)
                      +++|++++.||.|++||++............      +..                .......+..+..+.     ....
T Consensus       208 g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~  287 (319)
T 3frx_A          208 GTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEP  287 (319)
T ss_dssp             SSEEEEEETTCEEEEEETTTTEEEEEEECCSCEEEEEECSSSSEEEEEETTEEEEEEETTEEEEEEECCCCTTCCGGGCC
T ss_pred             CCEEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEcCCCCEEEEEcCCCcEEEEeCcCeeeeccCccccccccCcCc
Confidence            9999999999999999986543221100000      000                000111122222110     0145


Q ss_pred             CeEEEEEecCCCEEEEeeCCCcEEEEeCCC
Q psy11529        212 WIHSVAFSKDGNKLCWTSHDGSINVRMSQQ  241 (244)
Q Consensus       212 ~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~  241 (244)
                      .+.+++|+|||++|++|+.||.|++||+.+
T Consensus       288 ~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t  317 (319)
T 3frx_A          288 HAVSLAWSADGQTLFAGYTDNVIRVWQVMT  317 (319)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEEEEE
T ss_pred             ceeEEEECCCCCEEEEeecCceEEEEEEee
Confidence            688999999999999999999999999875

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=1.6e-38  Score=241.38  Aligned_cols=206  Identities=14%  Similarity=0.164  Sum_probs=181.7

Q ss_pred             EEeCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEee
Q psy11529          5 YSFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQ   84 (244)
Q Consensus         5 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~   84 (244)
                      +..|.++|.+++|+|++++|++|+.|+.|+|||...  +  +....+..|...|.+++|+|++.++++++.|+.+++|++
T Consensus        60 l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~--~--~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~  135 (354)
T 2pbi_B           60 LKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFT--T--NKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPL  135 (354)
T ss_dssp             EECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT--C--CEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEEC
T ss_pred             ecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCC--C--CcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEE
Confidence            445799999999999999999999999999999876  4  566677788999999999999999999999999999994


Q ss_pred             eCCCC----CceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecC--C
Q psy11529         85 NNDDK----KWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHP--N  158 (244)
Q Consensus        85 ~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p--~  158 (244)
                        ...    .......+..|...+.+++|+|++..|++++.|++|++||+++++.    ......|...+.+++|+|  +
T Consensus       136 --~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~----~~~~~~h~~~v~~~~~~~~~~  209 (354)
T 2pbi_B          136 --TFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQL----LQSFHGHGADVLCLDLAPSET  209 (354)
T ss_dssp             --CCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCE----EEEEECCSSCEEEEEECCCSS
T ss_pred             --eccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeE----EEEEcCCCCCeEEEEEEeCCC
Confidence              322    1223445567999999999999999999999999999999998864    455667888999999988  5


Q ss_pred             CCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEe
Q psy11529        159 NHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRM  238 (244)
Q Consensus       159 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd  238 (244)
                      +++|++|+.||.|++||+                  .+++++..+..|   ...|.+++|+|++.+|++++.|++|++||
T Consensus       210 g~~l~sgs~Dg~v~~wd~------------------~~~~~~~~~~~h---~~~v~~v~~~p~~~~l~s~s~D~~v~lwd  268 (354)
T 2pbi_B          210 GNTFVSGGCDKKAMVWDM------------------RSGQCVQAFETH---ESDVNSVRYYPSGDAFASGSDDATCRLYD  268 (354)
T ss_dssp             CCEEEEEETTSCEEEEET------------------TTCCEEEEECCC---SSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             CCEEEEEeCCCeEEEEEC------------------CCCcEEEEecCC---CCCeEEEEEeCCCCEEEEEeCCCeEEEEE
Confidence            689999999999999999                  678888889988   89999999999999999999999999999


Q ss_pred             CCC
Q psy11529        239 SQQ  241 (244)
Q Consensus       239 ~~~  241 (244)
                      +++
T Consensus       269 ~~~  271 (354)
T 2pbi_B          269 LRA  271 (354)
T ss_dssp             TTT
T ss_pred             CCC
Confidence            875

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=2.6e-38  Score=239.38  Aligned_cols=209  Identities=12%  Similarity=0.127  Sum_probs=176.6

Q ss_pred             EEeCCCceEEEEE-----cC-CCCeEEEecCCCeEEEeeeccCCC---cceeeeeeccCCCceEEEEeCCCCCeEEEEeC
Q psy11529          5 YSFGINPVTTHAW-----NN-TRQQLAFTPNNQEVHLYQYEKAAN---DWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSA   75 (244)
Q Consensus         5 ~~~~~~~v~~~~~-----~~-~~~~l~~~~~d~~v~v~~~~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~   75 (244)
                      +..|.++|++++|     ++ ++++|++|+.|++|++|++.....   ...+...+.+|...|.+++|+|++.++++++.
T Consensus        17 l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~   96 (343)
T 2xzm_R           17 LEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSW   96 (343)
T ss_dssp             EECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEET
T ss_pred             eccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcC
Confidence            4557999999999     77 899999999999999999965210   11456678899999999999999999999999


Q ss_pred             CccEEEEeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEe
Q psy11529         76 DRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDW  155 (244)
Q Consensus        76 d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~  155 (244)
                      |++|++||  +.+++.  ...+.+|...|.+++|+|++++|++++.|+.|++||+.....  ........|...+.+++|
T Consensus        97 D~~v~lwd--~~~~~~--~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~--~~~~~~~~~~~~v~~~~~  170 (343)
T 2xzm_R           97 DKTLRLWD--LRTGTT--YKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECK--FSSAEKENHSDWVSCVRY  170 (343)
T ss_dssp             TSEEEEEE--TTSSCE--EEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEE--EECCTTTSCSSCEEEEEE
T ss_pred             CCcEEEEE--CCCCcE--EEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCce--eeeecccCCCceeeeeee
Confidence            99999999  777764  344567999999999999999999999999999999974321  111122367788999999


Q ss_pred             cCCC----------CEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEE
Q psy11529        156 HPNN----------HLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKL  225 (244)
Q Consensus       156 ~p~~----------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  225 (244)
                      +|++          .+|++++.||.|++||.                   ..+....+..|   ...|.+++|+|+|++|
T Consensus       171 ~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-------------------~~~~~~~~~~h---~~~v~~~~~s~~g~~l  228 (343)
T 2xzm_R          171 SPIMKSANKVQPFAPYFASVGWDGRLKVWNT-------------------NFQIRYTFKAH---ESNVNHLSISPNGKYI  228 (343)
T ss_dssp             CCCCCSCSCCCSSCCEEEEEETTSEEEEEET-------------------TTEEEEEEECC---SSCEEEEEECTTSSEE
T ss_pred             ccccccccccCCCCCEEEEEcCCCEEEEEcC-------------------CCceeEEEcCc---cccceEEEECCCCCEE
Confidence            9987          78999999999999994                   34566778888   8999999999999999


Q ss_pred             EEeeCCCcEEEEeCCC
Q psy11529        226 CWTSHDGSINVRMSQQ  241 (244)
Q Consensus       226 ~~~~~dg~i~vwd~~~  241 (244)
                      ++|+.||.|++||+.+
T Consensus       229 ~sgs~dg~v~iwd~~~  244 (343)
T 2xzm_R          229 ATGGKDKKLLIWDILN  244 (343)
T ss_dssp             EEEETTCEEEEEESSC
T ss_pred             EEEcCCCeEEEEECCC
Confidence            9999999999999943

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.8e-38  Score=238.96  Aligned_cols=216  Identities=21%  Similarity=0.330  Sum_probs=170.4

Q ss_pred             CCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCC---CcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEee
Q psy11529          8 GINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAA---NDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQ   84 (244)
Q Consensus         8 ~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~   84 (244)
                      |.++|.+++|+|++++|++|+.|+.|+||++....   ........+.+|...|.+++|+|++++|++++.|++|++|| 
T Consensus        57 h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd-  135 (330)
T 2hes_X           57 HKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWE-  135 (330)
T ss_dssp             CCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEE-
T ss_pred             ccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEe-
Confidence            67899999999999999999999999999985311   11256678899999999999999999999999999999999 


Q ss_pred             eCCC-C-CceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCC--CC
Q psy11529         85 NNDD-K-KWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPN--NH  160 (244)
Q Consensus        85 ~~~~-~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~--~~  160 (244)
                       +.. + .......+.+|...|.+++|+|++++|++++.|++|++||......  .......+|...|.+++|+|+  +.
T Consensus       136 -~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~--~~~~~~~~h~~~v~~~~~~~~~~~~  212 (330)
T 2hes_X          136 -TDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDW--ECVAVLNGHEGTVWSSDFDKTEGVF  212 (330)
T ss_dssp             -CCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEE--EEEEEECCCSSCEEEEEECCSSSSC
T ss_pred             -ccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCe--eEEEEccCCCCcEEEEEecCCCCee
Confidence             532 2 2233445678899999999999999999999999999999887632  345566789999999999998  67


Q ss_pred             EEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecC-CCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeC
Q psy11529        161 LLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNN-SSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMS  239 (244)
Q Consensus       161 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~  239 (244)
                      +|++++.|++|++||++......          .....+...+.. |   ...|.+++|++++ +|++++.||.|++||+
T Consensus       213 ~l~s~s~D~~v~iw~~~~~~~~~----------~~~~~~~~~~~~~h---~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~  278 (330)
T 2hes_X          213 RLCSGSDDSTVRVWKYMGDDEDD----------QQEWVCEAILPDVH---KRQVYNVAWGFNG-LIASVGADGVLAVYEE  278 (330)
T ss_dssp             EEEEEETTSCEEEEEEEEECTTS----------CEEEEEEEECCSCC---SSCEEEEEECTTS-CEEEEETTSCEEEEEE
T ss_pred             EEEEEeCCCeEEEEEecCCCccc----------cceeEEeeeccccc---ccceEEEEEcCCC-EEEEEeCCCEEEEEEc
Confidence            89999999999999996432110          011134445554 5   8899999999765 8999999999999997


Q ss_pred             CC
Q psy11529        240 QQ  241 (244)
Q Consensus       240 ~~  241 (244)
                      .+
T Consensus       279 ~~  280 (330)
T 2hes_X          279 VD  280 (330)
T ss_dssp             ET
T ss_pred             CC
Confidence            54

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2e-38  Score=242.50  Aligned_cols=218  Identities=17%  Similarity=0.323  Sum_probs=187.6

Q ss_pred             ceeEEeCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCC--CCeEEEEeCCccE
Q psy11529          2 AEVYSFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPN--TNRIVTCSADRNA   79 (244)
Q Consensus         2 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i   79 (244)
                      ...+..|.++|++++|+|++++|++|+.||.|+||++..  ...+....+.+|...|.+++|+|+  +++|++++.|+.|
T Consensus         4 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~--~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v   81 (379)
T 3jrp_A            4 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEG--ETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKV   81 (379)
T ss_dssp             -CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEET--TEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred             cEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCC--CcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEE
Confidence            456778999999999999999999999999999999975  333777889999999999999987  8999999999999


Q ss_pred             EEEeeeCCCCCceeeEEEeccCcceEEEEECCC--CCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecC
Q psy11529         80 YVWTQNNDDKKWKPTLVLLRINRAATCVKWSPL--ENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHP  157 (244)
Q Consensus        80 ~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p  157 (244)
                      ++||  +.+++.........|...+.+++|+|+  +.+|++++.|+.|++||++....  ........|...+.+++|+|
T Consensus        82 ~iwd--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~--~~~~~~~~~~~~v~~~~~~~  157 (379)
T 3jrp_A           82 LIWK--EENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT--TSPIIIDAHAIGVNSASWAP  157 (379)
T ss_dssp             EEEE--EETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSC--CCEEEEECCTTCEEEEEECC
T ss_pred             EEEE--cCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCc--eeeEEecCCCCceEEEEEcC
Confidence            9999  667665456666778999999999999  99999999999999999998754  12334567788999999999


Q ss_pred             -------------CCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecC---
Q psy11529        158 -------------NNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKD---  221 (244)
Q Consensus       158 -------------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~---  221 (244)
                                   ++++|++++.||.|++||++...              ........+..|   ...|.+++|+|+   
T Consensus       158 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--------------~~~~~~~~~~~h---~~~v~~~~~sp~~~~  220 (379)
T 3jrp_A          158 ATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDA--------------QTYVLESTLEGH---SDWVRDVAWSPTVLL  220 (379)
T ss_dssp             CC----------CTTCEEEEEETTSCEEEEEEETTT--------------TEEEEEEEECCC---SSCEEEEEECCCCSS
T ss_pred             ccccccccccCCCCCCEEEEEeCCCeEEEEEecCCC--------------cceeeEEEEecc---cCcEeEEEECCCCCC
Confidence                         68999999999999999995332              123456677888   899999999999   


Q ss_pred             CCEEEEeeCCCcEEEEeCCCC
Q psy11529        222 GNKLCWTSHDGSINVRMSQQV  242 (244)
Q Consensus       222 ~~~l~~~~~dg~i~vwd~~~~  242 (244)
                      +++|++++.||.|++||+++.
T Consensus       221 ~~~l~s~~~dg~i~iwd~~~~  241 (379)
T 3jrp_A          221 RSYLASVSQDRTCIIWTQDNE  241 (379)
T ss_dssp             SEEEEEEETTSCEEEEEESST
T ss_pred             CCeEEEEeCCCEEEEEeCCCC
Confidence            899999999999999998863

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=2.8e-39  Score=252.01  Aligned_cols=210  Identities=16%  Similarity=0.153  Sum_probs=170.2

Q ss_pred             EeCCCceEEEEEcC-CCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCC-CCCeEEEEeCCccEEEEe
Q psy11529          6 SFGINPVTTHAWNN-TRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAP-NTNRIVTCSADRNAYVWT   83 (244)
Q Consensus         6 ~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd   83 (244)
                      ..|...|+|++|+| ++++||+|+.||.|+|||+..  ++......+.+|.+.|++++|+| ++++|++++.|++|++||
T Consensus       116 ~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~--~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd  193 (435)
T 4e54_B          116 APFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGI--KDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQD  193 (435)
T ss_dssp             EECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSC--CSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEE
T ss_pred             CCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCC--CCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEee
Confidence            34678899999999 567999999999999999976  43355667788999999999998 789999999999999999


Q ss_pred             eeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCC-EE
Q psy11529         84 QNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNH-LL  162 (244)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~-~l  162 (244)
                        ++++..........+...+.+++|+|++++|++|+.|+.|++||++...     ......|...|.+++|+|++. ++
T Consensus       194 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~-----~~~~~~h~~~v~~v~~~p~~~~~~  266 (435)
T 4e54_B          194 --FKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKE-----LWNLRMHKKKVTHVALNPCCDWFL  266 (435)
T ss_dssp             --TTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCB-----CCCSBCCSSCEEEEEECTTCSSEE
T ss_pred             --ccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcce-----eEEEecccceEEeeeecCCCceEE
Confidence              6655432222222234567899999999999999999999999987543     245567889999999999886 78


Q ss_pred             EEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCCC
Q psy11529        163 GCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQV  242 (244)
Q Consensus       163 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~  242 (244)
                      ++++.|+.|++||++....               ...+....+|   ...|++++|+|+|++|++++.||.|+|||+++.
T Consensus       267 ~s~s~d~~v~iwd~~~~~~---------------~~~~~~~~~h---~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~  328 (435)
T 4e54_B          267 ATASVDQTVKIWDLRQVRG---------------KASFLYSLPH---RHPVNAACFSPDGARLLTTDQKSEIRVYSASQW  328 (435)
T ss_dssp             EEEETTSBCCEEETTTCCS---------------SSCCSBCCBC---SSCEEECCBCTTSSEEEEEESSSCEEEEESSSS
T ss_pred             EEecCcceeeEEecccccc---------------cceEEEeeec---cccccceeECCCCCeeEEEcCCCEEEEEECCCC
Confidence            8999999999999853221               1122223456   889999999999999999999999999999763

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=1.2e-37  Score=239.73  Aligned_cols=214  Identities=19%  Similarity=0.250  Sum_probs=173.6

Q ss_pred             ceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCCCCC
Q psy11529         11 PVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKK   90 (244)
Q Consensus        11 ~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~   90 (244)
                      .|.+++|+|+|++|++|+.|+.|++||+.+  +  +....+.+|...|.+++|+|++++|++++.|++|++||  +.+++
T Consensus       125 ~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~--~--~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd--~~~~~  198 (393)
T 1erj_A          125 YIRSVCFSPDGKFLATGAEDRLIRIWDIEN--R--KIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWD--LRTGQ  198 (393)
T ss_dssp             BEEEEEECTTSSEEEEEETTSCEEEEETTT--T--EEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEE--TTTTE
T ss_pred             eEEEEEECCCCCEEEEEcCCCeEEEEECCC--C--cEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEE--CCCCe
Confidence            499999999999999999999999999987  5  67788999999999999999999999999999999999  77776


Q ss_pred             ceeeEEEeccCcceEEEEECC-CCCeEEEeeCCCeEEEEEeecCCCceEEE---eeecCCCCceeEEEecCCCCEEEEee
Q psy11529         91 WKPTLVLLRINRAATCVKWSP-LENKFAAGSGARLISVCYFESENDWWVAK---HIKKPIKSTITCLDWHPNNHLLGCGS  166 (244)
Q Consensus        91 ~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~---~~~~~~~~~v~~~~~~p~~~~l~~~~  166 (244)
                      ....   ..+...+.+++|+| ++++|++++.|+.|++||++++.......   .....|...|.+++|+|++++|++++
T Consensus       199 ~~~~---~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s  275 (393)
T 1erj_A          199 CSLT---LSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGS  275 (393)
T ss_dssp             EEEE---EECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEE
T ss_pred             eEEE---EEcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEe
Confidence            4332   23667899999999 89999999999999999998876411111   11246788999999999999999999


Q ss_pred             CCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCCC
Q psy11529        167 TDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQV  242 (244)
Q Consensus       167 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~  242 (244)
                      .|+.|++||++.........      ....+.+...+.+|   ...|.+++|+|++++|++|+.|+.|++||+++.
T Consensus       276 ~d~~v~~wd~~~~~~~~~~~------~~~~~~~~~~~~~h---~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~  342 (393)
T 1erj_A          276 LDRSVKLWNLQNANNKSDSK------TPNSGTCEVTYIGH---KDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG  342 (393)
T ss_dssp             TTSEEEEEEC---------------------CEEEEEECC---SSCEEEEEECGGGCEEEEEETTSEEEEEETTTC
T ss_pred             CCCEEEEEECCCCCCccccc------CCCCCcceEEEecc---cCcEEEEEECCCCCEEEEEeCCCeEEEEECCCC
Confidence            99999999996432211000      00224566778888   889999999999999999999999999998764

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=7.8e-38  Score=251.76  Aligned_cols=196  Identities=20%  Similarity=0.328  Sum_probs=176.0

Q ss_pred             EeCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeee
Q psy11529          6 SFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQN   85 (244)
Q Consensus         6 ~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~   85 (244)
                      ..|..+|.+++|+|++++|++++.|+.|++|+...     +.+..+.+|...|.+++|+|++++|++++.|+.|++||  
T Consensus       382 ~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~~-----~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~--  454 (577)
T 2ymu_A          382 TGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG-----QLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWN--  454 (577)
T ss_dssp             ECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTC-----CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEE--
T ss_pred             cCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCC-----CEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEE--
Confidence            44688999999999999999999999999999766     67788899999999999999999999999999999999  


Q ss_pred             CCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEe
Q psy11529         86 NDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCG  165 (244)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~  165 (244)
                      .. ++.  ...+..|...+.+++|+|++++|++++.|+.|++||.. ++    .......|...|++++|+|++++|+++
T Consensus       455 ~~-~~~--~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~-~~----~~~~~~~h~~~v~~l~~s~dg~~l~s~  526 (577)
T 2ymu_A          455 RN-GQL--LQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQ----LLQTLTGHSSSVRGVAFSPDGQTIASA  526 (577)
T ss_dssp             TT-SCE--EEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETT-SC----EEEEEECCSSCEEEEEECTTSSCEEEE
T ss_pred             CC-CCE--EEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCC-CC----EEEEEeCCCCCEEEEEEcCCCCEEEEE
Confidence            54 332  34456789999999999999999999999999999953 32    345567788999999999999999999


Q ss_pred             eCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEe
Q psy11529        166 STDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRM  238 (244)
Q Consensus       166 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd  238 (244)
                      +.||.|++||.                   +++++..+.+|   ...|++++|+|||++|++++.|++|++||
T Consensus       527 ~~dg~v~lwd~-------------------~~~~~~~~~~h---~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd  577 (577)
T 2ymu_A          527 SDDKTVKLWNR-------------------NGQLLQTLTGH---SSSVWGVAFSPDGQTIASASSDKTVKLWN  577 (577)
T ss_dssp             ETTSEEEEECT-------------------TSCEEEEEECC---SSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             ECcCEEEEEeC-------------------CCCEEEEEcCC---CCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence            99999999995                   47788889999   99999999999999999999999999997

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=5.4e-38  Score=254.25  Aligned_cols=206  Identities=14%  Similarity=0.198  Sum_probs=175.5

Q ss_pred             eEEeCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCC----ccE
Q psy11529          4 VYSFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSAD----RNA   79 (244)
Q Consensus         4 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----~~i   79 (244)
                      .+..|.+.|++++|+|+|++||+|+.|++|+|||+..  +.......+.+|.+.|.+++|+|++++|++++.+    +.|
T Consensus        54 ~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~--~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v  131 (611)
T 1nr0_A           54 IYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQ--TTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHV  131 (611)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSS--TTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEE
T ss_pred             EecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCC--CcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEE
Confidence            3455789999999999999999999999999999965  2224556788999999999999999999988765    478


Q ss_pred             EEEeeeCCCCCceeeEEEeccCcceEEEEECCCCC-eEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCC
Q psy11529         80 YVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLEN-KFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPN  158 (244)
Q Consensus        80 ~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~  158 (244)
                      ++||  .  ++..  ..+.+|...|++++|+|++. .|++++.|++|++||.+..+    .......|...|.+++|+|+
T Consensus       132 ~~wd--~--~~~~--~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~----~~~~l~~H~~~V~~v~fspd  201 (611)
T 1nr0_A          132 FLFD--T--GTSN--GNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFK----FKSTFGEHTKFVHSVRYNPD  201 (611)
T ss_dssp             EETT--T--CCBC--BCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBE----EEEEECCCSSCEEEEEECTT
T ss_pred             EEee--C--CCCc--ceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCe----EeeeeccccCceEEEEECCC
Confidence            8888  3  3222  23467999999999999987 59999999999999977654    34566789999999999999


Q ss_pred             CCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEec-------CCCCCCCCeEEEEEecCCCEEEEeeCC
Q psy11529        159 NHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELN-------NSSSGGGWIHSVAFSKDGNKLCWTSHD  231 (244)
Q Consensus       159 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~v~~~~~s~~~~~l~~~~~d  231 (244)
                      |++|++++.|++|++||+                  ..++.+..+.       +|   ...|.+++|+|+|++|++++.|
T Consensus       202 g~~las~s~D~~i~lwd~------------------~~g~~~~~~~~~~~~~~~h---~~~V~~v~~spdg~~l~s~s~D  260 (611)
T 1nr0_A          202 GSLFASTGGDGTIVLYNG------------------VDGTKTGVFEDDSLKNVAH---SGSVFGLTWSPDGTKIASASAD  260 (611)
T ss_dssp             SSEEEEEETTSCEEEEET------------------TTCCEEEECBCTTSSSCSS---SSCEEEEEECTTSSEEEEEETT
T ss_pred             CCEEEEEECCCcEEEEEC------------------CCCcEeeeecccccccccc---CCCEEEEEECCCCCEEEEEeCC
Confidence            999999999999999998                  5566666663       57   8999999999999999999999


Q ss_pred             CcEEEEeCCCC
Q psy11529        232 GSINVRMSQQV  242 (244)
Q Consensus       232 g~i~vwd~~~~  242 (244)
                      ++|++||+++.
T Consensus       261 ~~v~lWd~~~~  271 (611)
T 1nr0_A          261 KTIKIWNVATL  271 (611)
T ss_dssp             SEEEEEETTTT
T ss_pred             CeEEEEeCCCC
Confidence            99999999753

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=6.3e-39  Score=245.91  Aligned_cols=211  Identities=16%  Similarity=0.204  Sum_probs=179.1

Q ss_pred             EEeCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEee
Q psy11529          5 YSFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQ   84 (244)
Q Consensus         5 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~   84 (244)
                      +..|.++|++++|+|++++|++|+.|++|+|||+.+  +  +....+..|...|.+++|+|++++|++|+.|+.+++|| 
T Consensus        62 l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~--~--~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~-  136 (380)
T 3iz6_a           62 LQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALT--S--QKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFN-  136 (380)
T ss_dssp             ECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTT--T--EEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEE-
T ss_pred             ccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCC--C--ccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEE-
Confidence            345789999999999999999999999999999977  4  67788999999999999999999999999999999999 


Q ss_pred             eCCCC-----CceeeEEEeccCcceEEEEECCC-CCeEEEeeCCCeEEEEEeecCCCceEEE-eeecCCCCceeEEEecC
Q psy11529         85 NNDDK-----KWKPTLVLLRINRAATCVKWSPL-ENKFAAGSGARLISVCYFESENDWWVAK-HIKKPIKSTITCLDWHP  157 (244)
Q Consensus        85 ~~~~~-----~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~v~~~~~~p  157 (244)
                       +.+.     .......+.+|...+.++.|+|+ +..|++++.|++|++||+++++...... .....|...+.+++|+|
T Consensus       137 -~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~  215 (380)
T 3iz6_a          137 -LSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINS  215 (380)
T ss_dssp             -CCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECS
T ss_pred             -CCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeec
Confidence             4432     11222345678899999999997 4579999999999999999887521111 11256788999999987


Q ss_pred             -CCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEE
Q psy11529        158 -NNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINV  236 (244)
Q Consensus       158 -~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v  236 (244)
                       ++++|++|+.|+.|++||++                 ...+.+..+.+|   ...|.+++|+|++++|++++.||+|++
T Consensus       216 ~~~~~l~sgs~D~~v~~wd~~-----------------~~~~~~~~~~~h---~~~v~~v~~~p~~~~l~s~s~D~~i~l  275 (380)
T 3iz6_a          216 LNANMFISGSCDTTVRLWDLR-----------------ITSRAVRTYHGH---EGDINSVKFFPDGQRFGTGSDDGTCRL  275 (380)
T ss_dssp             SSCCEEEEEETTSCEEEEETT-----------------TTCCCCEEECCC---SSCCCEEEECTTSSEEEEECSSSCEEE
T ss_pred             CCCCEEEEEECCCeEEEEECC-----------------CCCcceEEECCc---CCCeEEEEEecCCCeEEEEcCCCeEEE
Confidence             88999999999999999984                 245677788888   999999999999999999999999999


Q ss_pred             EeCCC
Q psy11529        237 RMSQQ  241 (244)
Q Consensus       237 wd~~~  241 (244)
                      ||+++
T Consensus       276 wd~~~  280 (380)
T 3iz6_a          276 FDMRT  280 (380)
T ss_dssp             EETTT
T ss_pred             EECCC
Confidence            99975

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=8.7e-38  Score=237.58  Aligned_cols=208  Identities=16%  Similarity=0.149  Sum_probs=167.2

Q ss_pred             eCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeC
Q psy11529          7 FGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNN   86 (244)
Q Consensus         7 ~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~   86 (244)
                      .|...|.+++|+|+++++ +++.||.|+|||+.+............+|...|.+++|+|++++|++++.|+.|++||  .
T Consensus        92 ~~~~~V~~~~~s~d~~~l-~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd--~  168 (357)
T 4g56_B           92 QTEAGVTDVAWVSEKGIL-VASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWD--L  168 (357)
T ss_dssp             ECSSCEEEEEEETTTEEE-EEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEE--T
T ss_pred             CCCCCEEEEEEcCCCCEE-EEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEE--C
Confidence            357889999999998655 5677999999999762111112233457999999999999999999999999999999  7


Q ss_pred             CCCCceeeEEEeccCcceEEEEECCCCC-eEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCC-CEEEE
Q psy11529         87 DDKKWKPTLVLLRINRAATCVKWSPLEN-KFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNN-HLLGC  164 (244)
Q Consensus        87 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~l~~  164 (244)
                      .+++.  ...+..|...|++++|+|++. ++++++.|+.|++||+++.+.  ........+...+.+++|+|++ .+|++
T Consensus       169 ~~~~~--~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~--~~~~~~~~~~~~v~~v~~sp~~~~~la~  244 (357)
T 4g56_B          169 SQKAV--LKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKP--ATRIDFCASDTIPTSVTWHPEKDDTFAC  244 (357)
T ss_dssp             TTTEE--EEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSC--BCBCCCTTCCSCEEEEEECTTSTTEEEE
T ss_pred             CCCcE--EEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCce--eeeeeeccccccccchhhhhcccceEEE
Confidence            77664  344567899999999999874 789999999999999988765  1222334566789999999975 68999


Q ss_pred             eeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCC-CEEEEeeCCCcEEEEeCCCC
Q psy11529        165 GSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDG-NKLCWTSHDGSINVRMSQQV  242 (244)
Q Consensus       165 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~vwd~~~~  242 (244)
                      |+.|+.|++||+                  ..++.+..+..|   ...|++++|+|++ ++|++++.|++|+|||+++.
T Consensus       245 g~~d~~i~~wd~------------------~~~~~~~~~~~~---~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~  302 (357)
T 4g56_B          245 GDETGNVSLVNI------------------KNPDSAQTSAVH---SQNITGLAYSYHSSPFLASISEDCTVAVLDADFS  302 (357)
T ss_dssp             EESSSCEEEEES------------------SCGGGCEEECCC---SSCEEEEEECSSSSCCEEEEETTSCEEEECTTSC
T ss_pred             eecccceeEEEC------------------CCCcEeEEEecc---ceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCC
Confidence            999999999999                  667788888888   8999999999987 58999999999999998763

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=3.2e-37  Score=237.45  Aligned_cols=211  Identities=17%  Similarity=0.151  Sum_probs=176.1

Q ss_pred             EeCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCC-CCCeEEEEeCCccEEEEee
Q psy11529          6 SFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAP-NTNRIVTCSADRNAYVWTQ   84 (244)
Q Consensus         6 ~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~   84 (244)
                      ..|...|.+++|+|++++|++++.|+.|++||+.+  +  +....+. +...+.+++|+| ++++|++++.|+.|++|| 
T Consensus       162 ~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~--~--~~~~~~~-~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd-  235 (393)
T 1erj_A          162 QGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRT--G--QCSLTLS-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWD-  235 (393)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT--T--EEEEEEE-CSSCEEEEEECSTTCCEEEEEETTSCEEEEE-
T ss_pred             ccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCC--C--eeEEEEE-cCCCcEEEEEECCCCCEEEEEcCCCcEEEEE-
Confidence            44688999999999999999999999999999987  4  5555555 677899999999 899999999999999999 


Q ss_pred             eCCCCCceeeEE-----EeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCc--------eEEEeeecCCCCcee
Q psy11529         85 NNDDKKWKPTLV-----LLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDW--------WVAKHIKKPIKSTIT  151 (244)
Q Consensus        85 ~~~~~~~~~~~~-----~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~--------~~~~~~~~~~~~~v~  151 (244)
                       ..++.....+.     ..+|...|.+++|+|++++|++++.|+.|++||++.....        ........+|...|.
T Consensus       236 -~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~  314 (393)
T 1erj_A          236 -SETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVL  314 (393)
T ss_dssp             -TTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEE
T ss_pred             -CCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEE
Confidence             77776433321     1467889999999999999999999999999999864321        112334567888999


Q ss_pred             EEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEec------CCCEE
Q psy11529        152 CLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSK------DGNKL  225 (244)
Q Consensus       152 ~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~------~~~~l  225 (244)
                      +++|+|++++|++|+.|+.|++||+                  .+++.+..+.+|   ...|.+++|++      ++++|
T Consensus       315 ~~~~~~~~~~l~sgs~D~~v~iwd~------------------~~~~~~~~l~~h---~~~v~~v~~~~~~~~~p~~~~l  373 (393)
T 1erj_A          315 SVATTQNDEYILSGSKDRGVLFWDK------------------KSGNPLLMLQGH---RNSVISVAVANGSSLGPEYNVF  373 (393)
T ss_dssp             EEEECGGGCEEEEEETTSEEEEEET------------------TTCCEEEEEECC---SSCEEEEEECSSCTTCTTCEEE
T ss_pred             EEEECCCCCEEEEEeCCCeEEEEEC------------------CCCeEEEEECCC---CCCEEEEEecCCcCcCCCCCEE
Confidence            9999999999999999999999998                  678888899999   89999999986      68899


Q ss_pred             EEeeCCCcEEEEeCCCCCC
Q psy11529        226 CWTSHDGSINVRMSQQVLP  244 (244)
Q Consensus       226 ~~~~~dg~i~vwd~~~~~p  244 (244)
                      ++|+.||+|++|++++..|
T Consensus       374 ~sgs~Dg~i~iW~~~~~~p  392 (393)
T 1erj_A          374 ATGSGDCKARIWKYKKIAP  392 (393)
T ss_dssp             EEEETTSEEEEEEEEEC--
T ss_pred             EEECCCCcEEECcccccCC
Confidence            9999999999999988765

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=2e-36  Score=226.12  Aligned_cols=222  Identities=16%  Similarity=0.191  Sum_probs=183.7

Q ss_pred             EEeCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEee
Q psy11529          5 YSFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQ   84 (244)
Q Consensus         5 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~   84 (244)
                      +..|..+|.+++|+|++++|++++.|+.|++||+..  +  +.+..+.+|...|.+++|+|++++|++++.|+.|++|| 
T Consensus        61 ~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~--~--~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd-  135 (312)
T 4ery_A           61 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSS--G--KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD-  135 (312)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT--C--CEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEE-
T ss_pred             hccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCC--C--cEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEE-
Confidence            344688999999999999999999999999999987  4  67788899999999999999999999999999999999 


Q ss_pred             eCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEE
Q psy11529         85 NNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGC  164 (244)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~  164 (244)
                       +++++.  ...+..|...+.+++|+|++++|++++.|+.|++||+++.+.   .......+...+..++|+|++++|++
T Consensus       136 -~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~  209 (312)
T 4ery_A          136 -VKTGKC--LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC---LKTLIDDDNPPVSFVKFSPNGKYILA  209 (312)
T ss_dssp             -TTTCCE--EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE---EEEECCSSCCCEEEEEECTTSSEEEE
T ss_pred             -CCCCEE--EEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCce---eeEEeccCCCceEEEEECCCCCEEEE
Confidence             777664  344567888999999999999999999999999999988764   33344556678999999999999999


Q ss_pred             eeCCCeEEEEEeeecccccC----CC-------------CCC--CCc--------cccccceeEEecCCCCCCCCeEEEE
Q psy11529        165 GSTDFKVRVFSAYIKDIESA----PQ-------------STN--WGS--------KSTLGNCLVELNNSSSGGGWIHSVA  217 (244)
Q Consensus       165 ~~~dg~i~i~d~~~~~~~~~----~~-------------~~~--~~~--------~~~~~~~~~~~~~~~~~~~~v~~~~  217 (244)
                      ++.||.|++||++.......    ..             ...  .+.        ....++.+..+.+|   ...|.+++
T Consensus       210 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h---~~~v~~~~  286 (312)
T 4ery_A          210 ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH---TDVVISTA  286 (312)
T ss_dssp             EETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCC---SSCEEEEE
T ss_pred             EcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhcc---CCcEEEEe
Confidence            99999999999865432110    00             000  000        23456677788888   89999999


Q ss_pred             EecCCCEEEEee--CCCcEEEEeCC
Q psy11529        218 FSKDGNKLCWTS--HDGSINVRMSQ  240 (244)
Q Consensus       218 ~s~~~~~l~~~~--~dg~i~vwd~~  240 (244)
                      |+|++++|++++  .|+.|++|+.+
T Consensus       287 ~~p~~~~l~s~~~~~d~~i~~W~~d  311 (312)
T 4ery_A          287 CHPTENIIASAALENDKTIKLWKSD  311 (312)
T ss_dssp             ECSSSSEEEEEECTTTCCEEEEECC
T ss_pred             ecCcCCceEEEEccCCccEEEecCC
Confidence            999999999987  69999999865

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=1.4e-37  Score=232.77  Aligned_cols=213  Identities=19%  Similarity=0.289  Sum_probs=171.6

Q ss_pred             EeCCCceEEEEEcC--CCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCC--CCeEEEEeCCccEEE
Q psy11529          6 SFGINPVTTHAWNN--TRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPN--TNRIVTCSADRNAYV   81 (244)
Q Consensus         6 ~~~~~~v~~~~~~~--~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~i   81 (244)
                      ..|.++|.+++|+|  ++++|++|+.|++|++||+..  +.+.....+.+|...|.+++|+|+  +.+|++++.|+.|++
T Consensus        54 ~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~--~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~l  131 (316)
T 3bg1_A           54 RGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREEN--GTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISL  131 (316)
T ss_dssp             ECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSS--SCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEE
T ss_pred             cCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCC--CcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEE
Confidence            44789999999986  489999999999999999987  444566778899999999999997  789999999999999


Q ss_pred             EeeeCCCCC-ceeeEEEeccCcceEEEEECCC-----------------CCeEEEeeCCCeEEEEEeecCCCceEEEeee
Q psy11529         82 WTQNNDDKK-WKPTLVLLRINRAATCVKWSPL-----------------ENKFAAGSGARLISVCYFESENDWWVAKHIK  143 (244)
Q Consensus        82 wd~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~-----------------~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~  143 (244)
                      ||  ...+. .........|...+.+++|+|+                 +++|++++.|+.|++||++.... +......
T Consensus       132 wd--~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~-~~~~~~l  208 (316)
T 3bg1_A          132 LT--YTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQ-WKEEQKL  208 (316)
T ss_dssp             EE--ECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSC-EEEEECC
T ss_pred             Ee--cCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCc-cceeeec
Confidence            99  55442 2222233567888999999997                 46899999999999999975532 2234456


Q ss_pred             cCCCCceeEEEecCCC----CEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEe
Q psy11529        144 KPIKSTITCLDWHPNN----HLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFS  219 (244)
Q Consensus       144 ~~~~~~v~~~~~~p~~----~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  219 (244)
                      ..|...|.+++|+|++    ++|++++.|++|++||+.....              .......+..|   ...|.+++|+
T Consensus       209 ~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~--------------~~~~~~~~~~~---~~~v~~v~~s  271 (316)
T 3bg1_A          209 EAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASS--------------NTWSPKLLHKF---NDVVWHVSWS  271 (316)
T ss_dssp             BCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTC--------------CCCBCCEEEEC---SSCEEEEEEC
T ss_pred             ccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccc--------------cchhhhhhhcC---CCcEEEEEEc
Confidence            7888999999999986    7899999999999999842110              00111233456   7899999999


Q ss_pred             cCCCEEEEeeCCCcEEEEeCC
Q psy11529        220 KDGNKLCWTSHDGSINVRMSQ  240 (244)
Q Consensus       220 ~~~~~l~~~~~dg~i~vwd~~  240 (244)
                      |++++|++++.|+.|++|+..
T Consensus       272 p~g~~las~~~D~~v~lw~~~  292 (316)
T 3bg1_A          272 ITANILAVSGGDNKVTLWKES  292 (316)
T ss_dssp             TTTCCEEEEESSSCEEEEEEC
T ss_pred             CCCCEEEEEcCCCeEEEEEEC
Confidence            999999999999999999975

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.3e-36  Score=229.57  Aligned_cols=215  Identities=18%  Similarity=0.304  Sum_probs=182.1

Q ss_pred             EeCCCceEEEEEcCC--CCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCC--CCeEEEEeCCccEEE
Q psy11529          6 SFGINPVTTHAWNNT--RQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPN--TNRIVTCSADRNAYV   81 (244)
Q Consensus         6 ~~~~~~v~~~~~~~~--~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~i   81 (244)
                      ..|.++|++++|+|+  +++|++++.||.|++||+..  +.......+..|...|.+++|+|+  +.+|++++.|+.|++
T Consensus        52 ~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v  129 (379)
T 3jrp_A           52 TGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEEN--GRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSV  129 (379)
T ss_dssp             CCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEET--TEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEE
T ss_pred             cCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCC--CceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEE
Confidence            346899999999987  99999999999999999988  544577888889999999999998  999999999999999


Q ss_pred             EeeeCCCCCceeeEEEeccCcceEEEEECC-------------CCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCC
Q psy11529         82 WTQNNDDKKWKPTLVLLRINRAATCVKWSP-------------LENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKS  148 (244)
Q Consensus        82 wd~~~~~~~~~~~~~~~~~~~~v~~~~~~~-------------~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~  148 (244)
                      ||  +..+..........|...+.+++|+|             ++.+|++++.|+.|++||++..............|..
T Consensus       130 ~d--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~  207 (379)
T 3jrp_A          130 VE--FKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSD  207 (379)
T ss_dssp             EE--CCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSS
T ss_pred             Ee--cCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccC
Confidence            99  66665555566678999999999999             6999999999999999999988765556667778889


Q ss_pred             ceeEEEecCC---CCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEE
Q psy11529        149 TITCLDWHPN---NHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKL  225 (244)
Q Consensus       149 ~v~~~~~~p~---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  225 (244)
                      .|.+++|+|+   +++|++++.||.|++||++.....             ....+.....|   ...|.+++|+|++++|
T Consensus       208 ~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~-------------~~~~~~~~~~~---~~~v~~~~~s~~g~~l  271 (379)
T 3jrp_A          208 WVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGP-------------WKKTLLKEEKF---PDVLWRASWSLSGNVL  271 (379)
T ss_dssp             CEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSC-------------CEEEESSSSCC---SSCEEEEEECSSSCCE
T ss_pred             cEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCcc-------------ceeeeeccccC---CCcEEEEEEcCCCCEE
Confidence            9999999999   899999999999999999432100             01111222234   7889999999999999


Q ss_pred             EEeeCCCcEEEEeCC
Q psy11529        226 CWTSHDGSINVRMSQ  240 (244)
Q Consensus       226 ~~~~~dg~i~vwd~~  240 (244)
                      ++++.||.|++|+++
T Consensus       272 ~~~~~dg~i~iw~~~  286 (379)
T 3jrp_A          272 ALSGGDNKVTLWKEN  286 (379)
T ss_dssp             EEEESSSSEEEEEEE
T ss_pred             EEecCCCcEEEEeCC
Confidence            999999999999987

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=3.1e-37  Score=236.49  Aligned_cols=209  Identities=17%  Similarity=0.249  Sum_probs=170.7

Q ss_pred             EeCCCceEEEEEcCC-CCeEEEecCCCeEEEeeeccCCCcceeeeee-----ccCCCceEEEEeCC-CCCeEEEEeCCcc
Q psy11529          6 SFGINPVTTHAWNNT-RQQLAFTPNNQEVHLYQYEKAANDWSQLDVL-----DGHDLKVTGIDWAP-NTNRIVTCSADRN   78 (244)
Q Consensus         6 ~~~~~~v~~~~~~~~-~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~-----~~~~~~v~~~~~~~-~~~~l~~~~~d~~   78 (244)
                      ..|.+.|.++.|+|+ +..|++|+.|++|++||+..  +  +.+..+     .+|...|.+++|++ ++.+|++|+.|++
T Consensus       154 ~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~--~--~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~  229 (380)
T 3iz6_a          154 TGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTT--G--QRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTT  229 (380)
T ss_dssp             CCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTT--C--CEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSC
T ss_pred             cCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCC--C--cEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCe
Confidence            346788999999997 45799999999999999987  4  444444     67899999999987 8899999999999


Q ss_pred             EEEEeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeee---cCCCCceeEEEe
Q psy11529         79 AYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIK---KPIKSTITCLDW  155 (244)
Q Consensus        79 i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---~~~~~~v~~~~~  155 (244)
                      |++||  ++... .....+.+|...|.+++|+|++++|++++.|++|++||++++..........   ..+...+++++|
T Consensus       230 v~~wd--~~~~~-~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  306 (380)
T 3iz6_a          230 VRLWD--LRITS-RAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAF  306 (380)
T ss_dssp             EEEEE--TTTTC-CCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEE
T ss_pred             EEEEE--CCCCC-cceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEE
Confidence            99999  54321 1234557899999999999999999999999999999999876411111100   111235899999


Q ss_pred             cCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEe----cCCCCCCCCeEEEEEecCCCEEEEeeCC
Q psy11529        156 HPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVEL----NNSSSGGGWIHSVAFSKDGNKLCWTSHD  231 (244)
Q Consensus       156 ~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~v~~~~~s~~~~~l~~~~~d  231 (244)
                      +|+|++|++|+.||.|++||+                  ..++.+..+    .+|   ...|++++|+|+|++|++|+.|
T Consensus       307 s~~g~~l~~g~~dg~i~vwd~------------------~~~~~~~~~~~~~~~h---~~~v~~l~~s~dg~~l~sgs~D  365 (380)
T 3iz6_a          307 SISGRLLFAGYSNGDCYVWDT------------------LLAEMVLNLGTLQNSH---EGRISCLGLSSDGSALCTGSWD  365 (380)
T ss_dssp             CSSSSEEEEECTTSCEEEEET------------------TTCCEEEEECCSCSSC---CCCCCEEEECSSSSEEEEECTT
T ss_pred             CCCCCEEEEEECCCCEEEEEC------------------CCCceEEEEecccCCC---CCceEEEEECCCCCEEEEeeCC
Confidence            999999999999999999998                  455666555    466   8899999999999999999999


Q ss_pred             CcEEEEeCCCC
Q psy11529        232 GSINVRMSQQV  242 (244)
Q Consensus       232 g~i~vwd~~~~  242 (244)
                      ++|++|++...
T Consensus       366 ~~i~iW~~~~~  376 (380)
T 3iz6_a          366 KNLKIWAFSGH  376 (380)
T ss_dssp             SCEEEEECCSS
T ss_pred             CCEEEEecCCC
Confidence            99999999864

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=1.8e-36  Score=229.27  Aligned_cols=204  Identities=16%  Similarity=0.203  Sum_probs=166.1

Q ss_pred             EeCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeee
Q psy11529          6 SFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQN   85 (244)
Q Consensus         6 ~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~   85 (244)
                      ..|...|.+++|+|++.++++|+.|+.|++||+.+  +  +....+.+|...|.+++|+|++++|++++.|+.|++||  
T Consensus        73 ~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~--~--~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd--  146 (343)
T 2xzm_R           73 TGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRT--G--TTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWN--  146 (343)
T ss_dssp             CCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTS--S--CEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEE--
T ss_pred             ccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCC--C--cEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEe--
Confidence            34688999999999999999999999999999987  5  67788999999999999999999999999999999999  


Q ss_pred             CCCCCceeeEEEeccCcceEEEEECCCC----------CeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEe
Q psy11529         86 NDDKKWKPTLVLLRINRAATCVKWSPLE----------NKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDW  155 (244)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~----------~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~  155 (244)
                      +.............|...+.+++|+|++          .+|++++.|+.|++||.+.     ........|...|.+++|
T Consensus       147 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-----~~~~~~~~h~~~v~~~~~  221 (343)
T 2xzm_R          147 ILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNF-----QIRYTFKAHESNVNHLSI  221 (343)
T ss_dssp             SSSCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTT-----EEEEEEECCSSCEEEEEE
T ss_pred             ccCCceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCC-----ceeEEEcCccccceEEEE
Confidence            5432211111112577889999999986          7899999999999999332     134456678899999999


Q ss_pred             cCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEE
Q psy11529        156 HPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSIN  235 (244)
Q Consensus       156 ~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~  235 (244)
                      +|+|++|++|+.||.|++||++.                 .......+. +   ...|.+++|+|++++++++ .|+.|+
T Consensus       222 s~~g~~l~sgs~dg~v~iwd~~~-----------------~~~~~~~~~-~---~~~v~~v~~sp~~~~la~~-~d~~v~  279 (343)
T 2xzm_R          222 SPNGKYIATGGKDKKLLIWDILN-----------------LTYPQREFD-A---GSTINQIAFNPKLQWVAVG-TDQGVK  279 (343)
T ss_dssp             CTTSSEEEEEETTCEEEEEESSC-----------------CSSCSEEEE-C---SSCEEEEEECSSSCEEEEE-ESSCEE
T ss_pred             CCCCCEEEEEcCCCeEEEEECCC-----------------Ccccceeec-C---CCcEEEEEECCCCCEEEEE-CCCCEE
Confidence            99999999999999999999831                 122333333 2   5679999999999887655 688899


Q ss_pred             EEeCCCC
Q psy11529        236 VRMSQQV  242 (244)
Q Consensus       236 vwd~~~~  242 (244)
                      +||+.+.
T Consensus       280 iw~~~~~  286 (343)
T 2xzm_R          280 IFNLMTQ  286 (343)
T ss_dssp             EEESSSC
T ss_pred             EEEeCCC
Confidence            9998753

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=1.4e-36  Score=249.38  Aligned_cols=213  Identities=16%  Similarity=0.168  Sum_probs=180.4

Q ss_pred             eEEeCCCceEEEEEcCCC-CeEEEecCCCeEEEeeeccCCCc-ceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEE
Q psy11529          4 VYSFGINPVTTHAWNNTR-QQLAFTPNNQEVHLYQYEKAAND-WSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYV   81 (244)
Q Consensus         4 ~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~v~v~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i   81 (244)
                      ....|.+.|++++|+|++ ++|++|+.|+.|++|++...... ......+.+|...|.+++|+|++++|++|+.|+.|++
T Consensus       377 ~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~v  456 (694)
T 3dm0_A          377 TMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRL  456 (694)
T ss_dssp             EEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred             hcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEE
Confidence            356789999999999875 68999999999999998652111 1345678899999999999999999999999999999


Q ss_pred             EeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCC--
Q psy11529         82 WTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNN--  159 (244)
Q Consensus        82 wd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~--  159 (244)
                      ||  +.++..  ...+.+|...|.+++|+|++++|++++.|++|++||...... .........|...|.+++|+|++  
T Consensus       457 wd--~~~~~~--~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~  531 (694)
T 3dm0_A          457 WD--LAAGVS--TRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECK-YTISEGGEGHRDWVSCVRFSPNTLQ  531 (694)
T ss_dssp             EE--TTTTEE--EEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEE-EEECSSTTSCSSCEEEEEECSCSSS
T ss_pred             EE--CCCCcc--eeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcc-eeeccCCCCCCCcEEEEEEeCCCCc
Confidence            99  777653  344568999999999999999999999999999999765432 11111224677889999999987  


Q ss_pred             CEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeC
Q psy11529        160 HLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMS  239 (244)
Q Consensus       160 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~  239 (244)
                      ..|++++.|+.|++||+                  ...+....+.+|   ...|++++|+|++++|++++.||.|++||+
T Consensus       532 ~~l~s~s~d~~v~vwd~------------------~~~~~~~~~~~h---~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~  590 (694)
T 3dm0_A          532 PTIVSASWDKTVKVWNL------------------SNCKLRSTLAGH---TGYVSTVAVSPDGSLCASGGKDGVVLLWDL  590 (694)
T ss_dssp             CEEEEEETTSCEEEEET------------------TTCCEEEEECCC---SSCEEEEEECTTSSEEEEEETTSBCEEEET
T ss_pred             ceEEEEeCCCeEEEEEC------------------CCCcEEEEEcCC---CCCEEEEEEeCCCCEEEEEeCCCeEEEEEC
Confidence            58999999999999999                  567788889998   899999999999999999999999999999


Q ss_pred             CCC
Q psy11529        240 QQV  242 (244)
Q Consensus       240 ~~~  242 (244)
                      ++.
T Consensus       591 ~~~  593 (694)
T 3dm0_A          591 AEG  593 (694)
T ss_dssp             TTT
T ss_pred             CCC
Confidence            753

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=2.4e-36  Score=231.81  Aligned_cols=210  Identities=18%  Similarity=0.190  Sum_probs=172.5

Q ss_pred             EeCCCceEEEEEcCCC-CeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCC-CCCeEEEEeCCccEEEEe
Q psy11529          6 SFGINPVTTHAWNNTR-QQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAP-NTNRIVTCSADRNAYVWT   83 (244)
Q Consensus         6 ~~~~~~v~~~~~~~~~-~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd   83 (244)
                      ..|.+.|.+++|+|++ ++|++|+.|+.|+||++.+  +.........+|...|.+++|+| ++++|++++.|+.|++||
T Consensus        70 ~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~--~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd  147 (383)
T 3ei3_B           70 SPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDV--QNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRD  147 (383)
T ss_dssp             CCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTS--TTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEE
T ss_pred             cCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCC--cccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEE
Confidence            3468999999999999 8999999999999999987  43344444457999999999999 789999999999999999


Q ss_pred             eeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCC-EE
Q psy11529         84 QNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNH-LL  162 (244)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~-~l  162 (244)
                        +.+...........+...+.+++|+|++++|++++.|+.|++||++ ++    .......|...|.+++|+|+++ +|
T Consensus       148 --~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~----~~~~~~~h~~~v~~~~~~~~~~~~l  220 (383)
T 3ei3_B          148 --FSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD-GH----EIFKEKLHKAKVTHAEFNPRCDWLM  220 (383)
T ss_dssp             --TTSCEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT-SC----EEEEEECSSSCEEEEEECSSCTTEE
T ss_pred             --CCCCceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC-CC----EEEEeccCCCcEEEEEECCCCCCEE
Confidence              6653322111112344789999999999999999999999999994 32    2445567889999999999998 99


Q ss_pred             EEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEec-CCCEEEEeeCCCcEEEEeCCC
Q psy11529        163 GCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSK-DGNKLCWTSHDGSINVRMSQQ  241 (244)
Q Consensus       163 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vwd~~~  241 (244)
                      ++++.|+.|++||++...              .....+..+ .|   ...|.+++|+| ++++|++++.|+.|++||+++
T Consensus       221 ~s~~~d~~i~iwd~~~~~--------------~~~~~~~~~-~~---~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~  282 (383)
T 3ei3_B          221 ATSSVDATVKLWDLRNIK--------------DKNSYIAEM-PH---EKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYD  282 (383)
T ss_dssp             EEEETTSEEEEEEGGGCC--------------STTCEEEEE-EC---SSCEEEEEECTTTSCEEEEEESSSEEEEEETTB
T ss_pred             EEEeCCCEEEEEeCCCCC--------------cccceEEEe-cC---CCceEEEEEcCCCCCEEEEEcCCCcEEEEECCC
Confidence            999999999999995322              114555555 56   89999999999 999999999999999999986


Q ss_pred             C
Q psy11529        242 V  242 (244)
Q Consensus       242 ~  242 (244)
                      .
T Consensus       283 ~  283 (383)
T 3ei3_B          283 W  283 (383)
T ss_dssp             T
T ss_pred             C
Confidence            4

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=2.5e-36  Score=244.51  Aligned_cols=220  Identities=17%  Similarity=0.289  Sum_probs=176.1

Q ss_pred             EeCCCceEEEEEcCCCCeEEEecCC----CeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCC-eEEEEeCCccEE
Q psy11529          6 SFGINPVTTHAWNNTRQQLAFTPNN----QEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTN-RIVTCSADRNAY   80 (244)
Q Consensus         6 ~~~~~~v~~~~~~~~~~~l~~~~~d----~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~   80 (244)
                      ..|.++|.+++|+|++++|++++.+    +.|++||..      .....+.+|...|++++|+|++. .|++++.|++|+
T Consensus       100 ~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~------~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~  173 (611)
T 1nr0_A          100 PVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTG------TSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVA  173 (611)
T ss_dssp             ECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTC------CBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEE
T ss_pred             cccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeCC------CCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEE
Confidence            4468899999999999999988765    478999853      35567889999999999999987 599999999999


Q ss_pred             EEeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeec------CCCCceeEEE
Q psy11529         81 VWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKK------PIKSTITCLD  154 (244)
Q Consensus        81 iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~------~~~~~v~~~~  154 (244)
                      +||  ..+++.  ...+.+|...|.+++|+|++++|++++.|++|++||+.+++.   ......      .|.+.|.+++
T Consensus       174 lwd--~~~~~~--~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~---~~~~~~~~~~~~~h~~~V~~v~  246 (611)
T 1nr0_A          174 IFE--GPPFKF--KSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTK---TGVFEDDSLKNVAHSGSVFGLT  246 (611)
T ss_dssp             EEE--TTTBEE--EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE---EEECBCTTSSSCSSSSCEEEEE
T ss_pred             EEE--CCCCeE--eeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcE---eeeeccccccccccCCCEEEEE
Confidence            999  666543  445678999999999999999999999999999999988764   122212      6889999999


Q ss_pred             ecCCCCEEEEeeCCCeEEEEEeeecccccCCCCC-C---------CCc---------------cccccceeEEecCCCCC
Q psy11529        155 WHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQST-N---------WGS---------------KSTLGNCLVELNNSSSG  209 (244)
Q Consensus       155 ~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~---------~~~---------------~~~~~~~~~~~~~~~~~  209 (244)
                      |+|++++|++++.|++|++||++..+........ .         +..               ....++....+.+|   
T Consensus       247 ~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh---  323 (611)
T 1nr0_A          247 WSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGH---  323 (611)
T ss_dssp             ECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCC---
T ss_pred             ECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCC---
Confidence            9999999999999999999998654322110000 0         000               01123345566788   


Q ss_pred             CCCeEEEEEecCCCEEEEeeCCCcEEEEeCCC
Q psy11529        210 GGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQ  241 (244)
Q Consensus       210 ~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~  241 (244)
                      ...|.+++|+|||++|++++.|+.|++||+++
T Consensus       324 ~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~  355 (611)
T 1nr0_A          324 NKAITALSSSADGKTLFSADAEGHINSWDIST  355 (611)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred             CCCEEEEEEeCCCCEEEEEeCCCcEEEEECCC
Confidence            89999999999999999999999999999875

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=7.9e-36  Score=222.16  Aligned_cols=205  Identities=16%  Similarity=0.228  Sum_probs=173.2

Q ss_pred             EEeCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCC-CCCeEEEEeCCccEEEEe
Q psy11529          5 YSFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAP-NTNRIVTCSADRNAYVWT   83 (244)
Q Consensus         5 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd   83 (244)
                      +..|.+.|.+++|+|++++|++|+.|++|++||+..  + ......+.+|...|.+++|+| ++.+|++|+.|++|++||
T Consensus        93 ~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~--~-~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd  169 (304)
T 2ynn_A           93 FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWEN--N-WALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWS  169 (304)
T ss_dssp             EECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGG--T-TEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEE
T ss_pred             EeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCC--C-cchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEE
Confidence            345789999999999999999999999999999976  2 145677889999999999999 678999999999999999


Q ss_pred             eeCCCCCceeeEEEeccCcceEEEEECC--CCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCE
Q psy11529         84 QNNDDKKWKPTLVLLRINRAATCVKWSP--LENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHL  161 (244)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~  161 (244)
                        +......... ...+...+..+.|+|  ++.+|++++.|++|++||+++++.    ......|...|.+++|+|++++
T Consensus       170 --~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~----~~~~~~h~~~v~~~~~~p~~~~  242 (304)
T 2ynn_A          170 --LGQSTPNFTL-TTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSC----VATLEGHMSNVSFAVFHPTLPI  242 (304)
T ss_dssp             --TTCSSCSEEE-ECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEE----EEEEECCSSCEEEEEECSSSSE
T ss_pred             --CCCCCcccee-ccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCcc----ceeeCCCCCCEEEEEECCCCCE
Confidence              6655533332 235667899999987  678999999999999999988754    5566788899999999999999


Q ss_pred             EEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCC--EEEEeeCCCcEEEEeC
Q psy11529        162 LGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGN--KLCWTSHDGSINVRMS  239 (244)
Q Consensus       162 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~vwd~  239 (244)
                      |++|+.||+|++||+                  .+++.+..+..|   ...+.+++|+|++.  ++++|+.| .+.+|++
T Consensus       243 l~s~s~Dg~i~iWd~------------------~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~asg~~~-g~~~~~~  300 (304)
T 2ynn_A          243 IISGSEDGTLKIWNS------------------STYKVEKTLNVG---LERSWCIATHPTGRKNYIASGFDN-GFTVLSL  300 (304)
T ss_dssp             EEEEETTSCEEEEET------------------TTCCEEEEECCS---SSSEEEEEECTTCGGGCEEEEETT-EEEEEEC
T ss_pred             EEEEcCCCeEEEEEC------------------CCCceeeeccCC---CccEEEEEECCCCCceEEEEecCC-ceEEEEe
Confidence            999999999999998                  678888899888   88999999999875  57777654 5777877


Q ss_pred             CC
Q psy11529        240 QQ  241 (244)
Q Consensus       240 ~~  241 (244)
                      .+
T Consensus       301 ~~  302 (304)
T 2ynn_A          301 GN  302 (304)
T ss_dssp             C-
T ss_pred             cc
Confidence            64

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.3e-36  Score=251.34  Aligned_cols=219  Identities=18%  Similarity=0.328  Sum_probs=184.7

Q ss_pred             CceeEEeCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCC--CCeEEEEeCCcc
Q psy11529          1 MAEVYSFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPN--TNRIVTCSADRN   78 (244)
Q Consensus         1 m~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~   78 (244)
                      |..+...|.++|++++|+|++++|++|+.||.|+||++.+  +.......+.+|...|.+++|+|+  +++|++|+.||.
T Consensus         1 ~~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~--~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~   78 (753)
T 3jro_A            1 MVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEG--ETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGK   78 (753)
T ss_dssp             -------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEET--TEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSC
T ss_pred             CeeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCC--CCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCe
Confidence            3456778999999999999999999999999999999975  334778889999999999999987  999999999999


Q ss_pred             EEEEeeeCCCCCceeeEEEeccCcceEEEEECCC--CCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEec
Q psy11529         79 AYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPL--ENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWH  156 (244)
Q Consensus        79 i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~  156 (244)
                      |++||  +.+++.........|...|.+++|+|+  ++.+++++.|+.|++||++....  ........|...|.+++|+
T Consensus        79 I~vwd--~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~--~~~~~~~~~~~~v~~l~~~  154 (753)
T 3jro_A           79 VLIWK--EENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT--TSPIIIDAHAIGVNSASWA  154 (753)
T ss_dssp             EEEEE--EETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSC--CCCEEEECCSSCEEEEEEC
T ss_pred             EEEEE--CCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCC--cceeEeecCCCceEEEEec
Confidence            99999  666655456666779999999999999  99999999999999999988743  1233446678899999999


Q ss_pred             C-------------CCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecC--
Q psy11529        157 P-------------NNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKD--  221 (244)
Q Consensus       157 p-------------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--  221 (244)
                      |             +++++++|+.||.|++||++...              ........+.+|   ...|.+++|+|+  
T Consensus       155 p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~--------------~~~~~~~~~~~h---~~~V~~l~~sp~~~  217 (753)
T 3jro_A          155 PATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDA--------------QTYVLESTLEGH---SDWVRDVAWSPTVL  217 (753)
T ss_dssp             CCC---------CGGGCCEEEEETTSCEEEEEEETTT--------------TEEEEEEEECCC---SSCEEEEEECCCCS
T ss_pred             CcccccccccccCCCCCEEEEEECCCeEEEEeccCCc--------------ccceeeeeecCC---CCcEEEEEeccCCC
Confidence            9             58999999999999999995432              223566778888   899999999999  


Q ss_pred             -CCEEEEeeCCCcEEEEeCCCC
Q psy11529        222 -GNKLCWTSHDGSINVRMSQQV  242 (244)
Q Consensus       222 -~~~l~~~~~dg~i~vwd~~~~  242 (244)
                       +++|++++.||.|++||+++.
T Consensus       218 ~~~~l~s~s~Dg~I~iwd~~~~  239 (753)
T 3jro_A          218 LRSYLASVSQDRTCIIWTQDNE  239 (753)
T ss_dssp             SSEEEEEEESSSCEEEEEESSS
T ss_pred             CCCEEEEEecCCEEEEecCCCC
Confidence             899999999999999999763

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.5e-35  Score=225.74  Aligned_cols=208  Identities=19%  Similarity=0.180  Sum_probs=180.1

Q ss_pred             EEeCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEee
Q psy11529          5 YSFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQ   84 (244)
Q Consensus         5 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~   84 (244)
                      +..|.++|++++|+|++++|++++.||.|++|++.+  +  +....+.+|...|.+++|+|++++|++++.|+.|++|| 
T Consensus        28 l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~--~--~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd-  102 (369)
T 3zwl_B           28 LTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLN--G--ERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWD-  102 (369)
T ss_dssp             EECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTT--C--CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEE-
T ss_pred             EEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCC--c--hhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEE-
Confidence            445789999999999999999999999999999977  4  67888999999999999999999999999999999999 


Q ss_pred             eCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCC-----CeEEEEEeecCCCceEEE-------eeecCCCC--ce
Q psy11529         85 NNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGA-----RLISVCYFESENDWWVAK-------HIKKPIKS--TI  150 (244)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~i~d~~~~~~~~~~~-------~~~~~~~~--~v  150 (244)
                       +.+++.....   .+...+.+++|+|+++++++++.+     +.+++||++.........       .....+..  .+
T Consensus       103 -~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (369)
T 3zwl_B          103 -VSNGQCVATW---KSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAA  178 (369)
T ss_dssp             -TTTCCEEEEE---ECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCE
T ss_pred             -CCCCcEEEEe---ecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccce
Confidence             7777744433   378899999999999999999998     999999998875422111       11222333  89


Q ss_pred             eEEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccc-cceeEEecCCCCCCCCeEEEEEecCCCEEEEee
Q psy11529        151 TCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTL-GNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTS  229 (244)
Q Consensus       151 ~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~  229 (244)
                      .+++|+|++++|++++.||.|++||+                  .. .+.+..+..|   ...|.+++|+|++++|++++
T Consensus       179 ~~~~~~~~~~~l~~~~~dg~i~i~d~------------------~~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~  237 (369)
T 3zwl_B          179 TVAGWSTKGKYIIAGHKDGKISKYDV------------------SNNYEYVDSIDLH---EKSISDMQFSPDLTYFITSS  237 (369)
T ss_dssp             EEEEECGGGCEEEEEETTSEEEEEET------------------TTTTEEEEEEECC---SSCEEEEEECTTSSEEEEEE
T ss_pred             eEEEEcCCCCEEEEEcCCCEEEEEEC------------------CCCcEeEEEEecC---CCceeEEEECCCCCEEEEec
Confidence            99999999999999999999999998                  44 6777888888   89999999999999999999


Q ss_pred             CCCcEEEEeCCCC
Q psy11529        230 HDGSINVRMSQQV  242 (244)
Q Consensus       230 ~dg~i~vwd~~~~  242 (244)
                      .||.|++||+++.
T Consensus       238 ~d~~i~v~d~~~~  250 (369)
T 3zwl_B          238 RDTNSFLVDVSTL  250 (369)
T ss_dssp             TTSEEEEEETTTC
T ss_pred             CCceEEEEECCCC
Confidence            9999999999864

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=1e-35  Score=239.51  Aligned_cols=197  Identities=20%  Similarity=0.330  Sum_probs=176.4

Q ss_pred             eCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeC
Q psy11529          7 FGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNN   86 (244)
Q Consensus         7 ~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~   86 (244)
                      .|..+|.+++|+|++++|++++.|+.|++|+...     +.+..+.+|...|.+++|+|++++|++++.|+.|++||  .
T Consensus       342 ~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~-----~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~--~  414 (577)
T 2ymu_A          342 GHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG-----QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN--R  414 (577)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTC-----CEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEEC--T
T ss_pred             CCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCC-----CEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEe--C
Confidence            4578999999999999999999999999999766     67888899999999999999999999999999999999  4


Q ss_pred             CCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEee
Q psy11529         87 DDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGS  166 (244)
Q Consensus        87 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~  166 (244)
                      . ++.  ...+..|...+.+++|+|++++|++++.|+.|++||....     .......|...|.+++|+|++++|++++
T Consensus       415 ~-~~~--~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~~-----~~~~~~~~~~~v~~~~~spd~~~las~~  486 (577)
T 2ymu_A          415 N-GQL--LQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQ-----LLQTLTGHSSSVRGVAFSPDGQTIASAS  486 (577)
T ss_dssp             T-CCE--EEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTSC-----EEEEEECCSSCEEEEEECTTSCEEEEEE
T ss_pred             C-CCE--EEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCCC-----EEEEEcCCCCCEEEEEEcCCCCEEEEEe
Confidence            3 443  3445678999999999999999999999999999996432     2455567889999999999999999999


Q ss_pred             CCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCC
Q psy11529        167 TDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQ  240 (244)
Q Consensus       167 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~  240 (244)
                      .|+.|++||.                   +++++..+.+|   ...|++++|+|||++|++++.||.|++||..
T Consensus       487 ~d~~i~iw~~-------------------~~~~~~~~~~h---~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~  538 (577)
T 2ymu_A          487 DDKTVKLWNR-------------------NGQLLQTLTGH---SSSVRGVAFSPDGQTIASASDDKTVKLWNRN  538 (577)
T ss_dssp             TTSEEEEEET-------------------TSCEEEEEECC---SSCEEEEEECTTSSCEEEEETTSEEEEECTT
T ss_pred             CCCEEEEEcC-------------------CCCEEEEEeCC---CCCEEEEEEcCCCCEEEEEECcCEEEEEeCC
Confidence            9999999995                   47788889998   8999999999999999999999999999964

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.7e-36  Score=232.04  Aligned_cols=207  Identities=16%  Similarity=0.186  Sum_probs=164.8

Q ss_pred             eCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCc-ceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeee
Q psy11529          7 FGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAAND-WSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQN   85 (244)
Q Consensus         7 ~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~   85 (244)
                      .|.++|.+++|+|++++|++++.|+.|++||+..  +. +.....+.+|...|.+++|+|++++|++++.|+.|++||  
T Consensus        53 ~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd--  128 (377)
T 3dwl_C           53 DHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRP--DGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCY--  128 (377)
T ss_dssp             CCSSCEEEEEECTTTCCEEEEETTSSEEEC--------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECC--
T ss_pred             cCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCC--CCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEE--
Confidence            4688999999999999999999999999999987  42 346777888999999999999999999999999999999  


Q ss_pred             CCCCCc-eeeEEEec-cCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCC--------------CceEEEeeecCCCCc
Q psy11529         86 NDDKKW-KPTLVLLR-INRAATCVKWSPLENKFAAGSGARLISVCYFESEN--------------DWWVAKHIKKPIKST  149 (244)
Q Consensus        86 ~~~~~~-~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~--------------~~~~~~~~~~~~~~~  149 (244)
                      +.+++. .....+.. |...|.+++|+|++++|++++.|+.|++||++...              ......... .|...
T Consensus       129 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  207 (377)
T 3dwl_C          129 FEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGW  207 (377)
T ss_dssp             C-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSS
T ss_pred             ECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCce
Confidence            555542 12334445 89999999999999999999999999999996432              111223333 78889


Q ss_pred             eeEEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccce----eEEecCCCCCCCCeEEEEEecCCCEE
Q psy11529        150 ITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNC----LVELNNSSSGGGWIHSVAFSKDGNKL  225 (244)
Q Consensus       150 v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~v~~~~~s~~~~~l  225 (244)
                      |.+++|+|++++|++++.||.|++||++                  .++.    +..+..|   ...|.+++|+|++++|
T Consensus       208 v~~~~~sp~~~~l~~~~~d~~i~iwd~~------------------~~~~~~~~~~~~~~~---~~~v~~~~~s~~~~~l  266 (377)
T 3dwl_C          208 VHAVGFSPSGNALAYAGHDSSVTIAYPS------------------APEQPPRALITVKLS---QLPLRSLLWANESAIV  266 (377)
T ss_dssp             EEEEEECTTSSCEEEEETTTEEC-CEEC------------------STTSCEEECCCEECS---SSCEEEEEEEETTEEE
T ss_pred             EEEEEECCCCCEEEEEeCCCcEEEEECC------------------CCCCcceeeEeecCC---CCceEEEEEcCCCCEE
Confidence            9999999999999999999999999994                  4444    6777888   8899999999999999


Q ss_pred             EEeeCCCcEEEEeCC
Q psy11529        226 CWTSHDGSINVRMSQ  240 (244)
Q Consensus       226 ~~~~~dg~i~vwd~~  240 (244)
                      ++++.++.+ +|+..
T Consensus       267 ~~~~~~~~~-~~~~~  280 (377)
T 3dwl_C          267 AAGYNYSPI-LLQGN  280 (377)
T ss_dssp             EEESSSSEE-EECCC
T ss_pred             EEEcCCcEE-EEEeC
Confidence            998766655 66654

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=2.5e-35  Score=222.34  Aligned_cols=209  Identities=14%  Similarity=0.134  Sum_probs=178.9

Q ss_pred             EeCCCceEEEEEcCC-CCeEEEecCCCeEEEeeeccCCC-cceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEe
Q psy11529          6 SFGINPVTTHAWNNT-RQQLAFTPNNQEVHLYQYEKAAN-DWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWT   83 (244)
Q Consensus         6 ~~~~~~v~~~~~~~~-~~~l~~~~~d~~v~v~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd   83 (244)
                      .-|.+.|++++|+|+ +++|++|+.|++|+|||+..... ...+...+.+|...|.+++|+|++++|++++.|+.|++|+
T Consensus        35 ~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~  114 (340)
T 4aow_A           35 KGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWD  114 (340)
T ss_dssp             CCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             CCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEe
Confidence            347999999999997 68999999999999999965211 1245677899999999999999999999999999999999


Q ss_pred             eeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCC--CE
Q psy11529         84 QNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNN--HL  161 (244)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~--~~  161 (244)
                        ......  ......+...+..+.+++++++|++++.|+.+++||......   .......|...+..++|++++  .+
T Consensus       115 --~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~  187 (340)
T 4aow_A          115 --LTTGTT--TRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCK---YTVQDESHSEWVSCVRFSPNSSNPI  187 (340)
T ss_dssp             --TTTTEE--EEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEE---EEECSSSCSSCEEEEEECSCSSSCE
T ss_pred             --ecccce--eeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCce---EEEEeccccCcccceEEccCCCCcE
Confidence              555543  333456778888999999999999999999999999876643   344556778899999999865  47


Q ss_pred             EEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCC
Q psy11529        162 LGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQ  241 (244)
Q Consensus       162 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~  241 (244)
                      +++++.|+.|++||+                  ..++.+..+.+|   ...|++++|+|++++|++++.||.|++||+++
T Consensus       188 ~~s~~~d~~i~i~d~------------------~~~~~~~~~~~h---~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~  246 (340)
T 4aow_A          188 IVSCGWDKLVKVWNL------------------ANCKLKTNHIGH---TGYLNTVTVSPDGSLCASGGKDGQAMLWDLNE  246 (340)
T ss_dssp             EEEEETTSCEEEEET------------------TTTEEEEEECCC---SSCEEEEEECTTSSEEEEEETTCEEEEEETTT
T ss_pred             EEEEcCCCEEEEEEC------------------CCCceeeEecCC---CCcEEEEEECCCCCEEEEEeCCCeEEEEEecc
Confidence            889999999999999                  677888889998   89999999999999999999999999999986


Q ss_pred             C
Q psy11529        242 V  242 (244)
Q Consensus       242 ~  242 (244)
                      .
T Consensus       247 ~  247 (340)
T 4aow_A          247 G  247 (340)
T ss_dssp             T
T ss_pred             C
Confidence            4

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=2.6e-35  Score=224.90  Aligned_cols=210  Identities=13%  Similarity=0.108  Sum_probs=176.5

Q ss_pred             EeCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeee
Q psy11529          6 SFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQN   85 (244)
Q Consensus         6 ~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~   85 (244)
                      ..|...|.+++|+|++++|++++.|+.|++|++..  ++......+..|...|.+++|+|++++|++++.|+.|++||+ 
T Consensus        49 ~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~-  125 (372)
T 1k8k_C           49 KEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKG--RTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYF-  125 (372)
T ss_dssp             ECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEET--TEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEE-
T ss_pred             cCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCC--CeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEe-
Confidence            34689999999999999999999999999999977  533445556779999999999999999999999999999994 


Q ss_pred             CCCCCc--eeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCC--------------CceEEEeeecCCCCc
Q psy11529         86 NDDKKW--KPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESEN--------------DWWVAKHIKKPIKST  149 (244)
Q Consensus        86 ~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~--------------~~~~~~~~~~~~~~~  149 (244)
                       ..+..  ........|...+.+++|+|++++|++++.|+.+++||++...              ...........|...
T Consensus       126 -~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (372)
T 1k8k_C          126 -EQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGW  204 (372)
T ss_dssp             -ETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSC
T ss_pred             -cCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCe
Confidence             44432  1122224578899999999999999999999999999975210              001234455578889


Q ss_pred             eeEEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEee
Q psy11529        150 ITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTS  229 (244)
Q Consensus       150 v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~  229 (244)
                      +.+++|+|++++|++++.||.|++||+                  ..++.+..+..|   ...+.+++|+|++++|+++ 
T Consensus       205 v~~~~~~~~~~~l~~~~~d~~i~i~d~------------------~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~-  262 (372)
T 1k8k_C          205 VHGVCFSANGSRVAWVSHDSTVCLADA------------------DKKMAVATLASE---TLPLLAVTFITESSLVAAG-  262 (372)
T ss_dssp             EEEEEECSSSSEEEEEETTTEEEEEEG------------------GGTTEEEEEECS---SCCEEEEEEEETTEEEEEE-
T ss_pred             EEEEEECCCCCEEEEEeCCCEEEEEEC------------------CCCceeEEEccC---CCCeEEEEEecCCCEEEEE-
Confidence            999999999999999999999999999                  667888889888   8899999999999988887 


Q ss_pred             CCCcEEEEeCCC
Q psy11529        230 HDGSINVRMSQQ  241 (244)
Q Consensus       230 ~dg~i~vwd~~~  241 (244)
                      .|+.|++|++++
T Consensus       263 ~d~~i~i~~~~~  274 (372)
T 1k8k_C          263 HDCFPVLFTYDS  274 (372)
T ss_dssp             TTSSCEEEEEET
T ss_pred             eCCeEEEEEccC
Confidence            899999999876

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=5.7e-35  Score=219.98  Aligned_cols=206  Identities=14%  Similarity=0.126  Sum_probs=175.7

Q ss_pred             eCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeec--cCCCceEEEEeCCCCCeEEEEeCCccEEEEee
Q psy11529          7 FGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLD--GHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQ   84 (244)
Q Consensus         7 ~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~   84 (244)
                      .|.++|++++|+|++++|++++ ||.|++|++.... .......+.  .|...|.+++|+|++++|++++.|+.|++|| 
T Consensus        49 ~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d-  125 (337)
T 1gxr_A           49 NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPG-NKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWD-  125 (337)
T ss_dssp             CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTT-CCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEE-
T ss_pred             cCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCC-ceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEE-
Confidence            3689999999999999999998 9999999997621 112333333  6899999999999999999999999999999 


Q ss_pred             eCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEE
Q psy11529         85 NNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGC  164 (244)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~  164 (244)
                       ..+++.........+...+.+++|+|+++++++++.|+.|++||+++.+.    ......|...+.+++|+|++++|++
T Consensus       126 -~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~----~~~~~~~~~~i~~~~~~~~~~~l~~  200 (337)
T 1gxr_A          126 -LAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTL----VRQFQGHTDGASCIDISNDGTKLWT  200 (337)
T ss_dssp             -CCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE----EEEECCCSSCEEEEEECTTSSEEEE
T ss_pred             -CCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCce----eeeeecccCceEEEEECCCCCEEEE
Confidence             67776555566677889999999999999999999999999999988753    4455668889999999999999999


Q ss_pred             eeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCCC
Q psy11529        165 GSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQV  242 (244)
Q Consensus       165 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~  242 (244)
                      ++.||.|++||+                  ..++.+..+. +   ...+.+++|+|++++|++++.|+.|++||+++.
T Consensus       201 ~~~dg~i~~~d~------------------~~~~~~~~~~-~---~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~  256 (337)
T 1gxr_A          201 GGLDNTVRSWDL------------------REGRQLQQHD-F---TSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKP  256 (337)
T ss_dssp             EETTSEEEEEET------------------TTTEEEEEEE-C---SSCEEEEEECTTSSEEEEEETTSCEEEEETTSS
T ss_pred             EecCCcEEEEEC------------------CCCceEeeec-C---CCceEEEEECCCCCEEEEEcCCCcEEEEECCCC
Confidence            999999999998                  5566666664 3   778999999999999999999999999999764

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=1.8e-36  Score=236.20  Aligned_cols=225  Identities=16%  Similarity=0.143  Sum_probs=167.0

Q ss_pred             CCCceEEEEEcC-CCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeC
Q psy11529          8 GINPVTTHAWNN-TRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNN   86 (244)
Q Consensus         8 ~~~~v~~~~~~~-~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~   86 (244)
                      |.++|++++|+| ++++|++|+.|++|++||+++  +..........+...+.+++|+|++++|++|+.||.|++||  +
T Consensus       163 H~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd--~  238 (435)
T 4e54_B          163 AGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKG--NILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLN--M  238 (435)
T ss_dssp             SSCCCCEEEECSSCTTEEEEECSSSCEEEEETTS--CEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEE--S
T ss_pred             CCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccC--CceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeec--c
Confidence            689999999998 688999999999999999987  32222222333455688999999999999999999999999  5


Q ss_pred             CCCCceeeEEEeccCcceEEEEECCCCC-eEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEe
Q psy11529         87 DDKKWKPTLVLLRINRAATCVKWSPLEN-KFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCG  165 (244)
Q Consensus        87 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~  165 (244)
                      +...   ...+..|...|.+++|+|++. +|++++.|+.|++||++...... ......+|...|++++|+|+|++|+++
T Consensus       239 ~~~~---~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~-~~~~~~~h~~~v~~~~~spdg~~l~s~  314 (435)
T 4e54_B          239 DGKE---LWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKA-SFLYSLPHRHPVNAACFSPDGARLLTT  314 (435)
T ss_dssp             SSCB---CCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSS-CCSBCCBCSSCEEECCBCTTSSEEEEE
T ss_pred             Ccce---eEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccc-eEEEeeeccccccceeECCCCCeeEEE
Confidence            5433   334467899999999999876 68889999999999998765411 112335678899999999999999999


Q ss_pred             eCCCeEEEEEeeecccccCC--------------------CCC-------------CCCc---------cccccceeEEe
Q psy11529        166 STDFKVRVFSAYIKDIESAP--------------------QST-------------NWGS---------KSTLGNCLVEL  203 (244)
Q Consensus       166 ~~dg~i~i~d~~~~~~~~~~--------------------~~~-------------~~~~---------~~~~~~~~~~~  203 (244)
                      +.||.|++||++..+.....                    ...             .+..         ...+++.+..+
T Consensus       315 ~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l  394 (435)
T 4e54_B          315 DQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQL  394 (435)
T ss_dssp             ESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEE
T ss_pred             cCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEE
Confidence            99999999998654321100                    000             0000         12334555555


Q ss_pred             cCCCCCCCCeEEE-EEecCCCEEEEeeCCCcEEEEeCCCCC
Q psy11529        204 NNSSSGGGWIHSV-AFSKDGNKLCWTSHDGSINVRMSQQVL  243 (244)
Q Consensus       204 ~~~~~~~~~v~~~-~~s~~~~~l~~~~~dg~i~vwd~~~~~  243 (244)
                      ..++  ...|.++ +|+|+|++|++|+ |+.|+|||+++-.
T Consensus       395 ~~~~--~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~gk  432 (435)
T 4e54_B          395 YDPE--SSGISSLNEFNPMGDTLASAM-GYHILIWSQQEAR  432 (435)
T ss_dssp             CCSS--CCCCCCEEEECTTSSCEEEEC-SSEEEECCCC---
T ss_pred             eCCC--CCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcCe
Confidence            4332  6777777 6999999999876 8899999998754

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.6e-36  Score=238.05  Aligned_cols=206  Identities=13%  Similarity=0.064  Sum_probs=168.9

Q ss_pred             eCCCceEEEEEcCC------CCeEEEecCCCeEEEeeeccCCCc-------ceeeeeeccCCCceEEEEeCCCCCeEEEE
Q psy11529          7 FGINPVTTHAWNNT------RQQLAFTPNNQEVHLYQYEKAAND-------WSQLDVLDGHDLKVTGIDWAPNTNRIVTC   73 (244)
Q Consensus         7 ~~~~~v~~~~~~~~------~~~l~~~~~d~~v~v~~~~~~~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~   73 (244)
                      .+.+.|.+++|+|+      +.+||+++.||+|+||++......       ..+...+.+|...|++++|+++ ..|++|
T Consensus       205 ~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~~lasg  283 (524)
T 2j04_B          205 HSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP-TTVVCG  283 (524)
T ss_dssp             ECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS-SEEEEE
T ss_pred             ecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC-CeEEEE
Confidence            35688999999997      579999999999999999762110       0123467889999999999985 489999


Q ss_pred             eCCccEEEEeeeCCCCCceeeEEEeccCcceEEE--EECCCC-CeEEEeeCCCeEEEEEeecCCCceEEEeeecCCC--C
Q psy11529         74 SADRNAYVWTQNNDDKKWKPTLVLLRINRAATCV--KWSPLE-NKFAAGSGARLISVCYFESENDWWVAKHIKKPIK--S  148 (244)
Q Consensus        74 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~--~  148 (244)
                      +.||+|++||  ++++.. +...+..|...|.++  +|+|++ .+|++++.|++|++||+++.+...    ....|.  .
T Consensus       284 s~DgtV~lWD--~~~~~~-~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~----~~~~~~~~~  356 (524)
T 2j04_B          284 FKNGFVAEFD--LTDPEV-PSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTK----TTVSRFRGS  356 (524)
T ss_dssp             ETTSEEEEEE--TTBCSS-CSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHC----EEEEECSCC
T ss_pred             eCCCEEEEEE--CCCCCC-ceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCccc----ccccccccC
Confidence            9999999999  665532 234457899999999  678887 899999999999999998865421    112222  3


Q ss_pred             ceeEEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEe
Q psy11529        149 TITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWT  228 (244)
Q Consensus       149 ~v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~  228 (244)
                      .+.+++|+|+++.+++++.|++|++||+                  ..+.++..+.+|   ...|++++|+|+|++|++|
T Consensus       357 ~v~~v~fsp~~~~l~s~~~d~tv~lwd~------------------~~~~~~~~l~gH---~~~V~sva~Sp~g~~l~Sg  415 (524)
T 2j04_B          357 NLVPVVYCPQIYSYIYSDGASSLRAVPS------------------RAAFAVHPLVSR---ETTITAIGVSRLHPMVLAG  415 (524)
T ss_dssp             SCCCEEEETTTTEEEEECSSSEEEEEET------------------TCTTCCEEEEEC---SSCEEEEECCSSCCBCEEE
T ss_pred             cccceEeCCCcCeEEEeCCCCcEEEEEC------------------cccccceeeecC---CCceEEEEeCCCCCeEEEE
Confidence            5789999999999999999999999999                  556677778888   9999999999999999999


Q ss_pred             eCCCcEEEEeCCC
Q psy11529        229 SHDGSINVRMSQQ  241 (244)
Q Consensus       229 ~~dg~i~vwd~~~  241 (244)
                      +.||+|++||+..
T Consensus       416 s~Dgtv~lwd~~~  428 (524)
T 2j04_B          416 SADGSLIITNAAR  428 (524)
T ss_dssp             ETTTEEECCBSCS
T ss_pred             ECCCEEEEEechH
Confidence            9999999999754

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=1.6e-34  Score=217.60  Aligned_cols=198  Identities=11%  Similarity=0.110  Sum_probs=174.6

Q ss_pred             eCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeC
Q psy11529          7 FGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNN   86 (244)
Q Consensus         7 ~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~   86 (244)
                      .+...|.+++|+|++++|++++.|+.|++||+.+  +  +....+..|...|.+++|+|++++|++++.|+.|++||  +
T Consensus       139 ~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~--~--~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d--~  212 (337)
T 1gxr_A          139 SSAPACYALAISPDSKVCFSCCSDGNIAVWDLHN--Q--TLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWD--L  212 (337)
T ss_dssp             CSSSCEEEEEECTTSSEEEEEETTSCEEEEETTT--T--EEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEE--T
T ss_pred             cCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCC--C--ceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEE--C
Confidence            4578899999999999999999999999999977  4  67788888999999999999999999999999999999  7


Q ss_pred             CCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEee
Q psy11529         87 DDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGS  166 (244)
Q Consensus        87 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~  166 (244)
                      .+++....   ..+...+.+++|+|+++++++++.++.+++||++....     .....|...+.+++|+|++++|++++
T Consensus       213 ~~~~~~~~---~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~l~~~~  284 (337)
T 1gxr_A          213 REGRQLQQ---HDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK-----YQLHLHESCVLSLKFAYCGKWFVSTG  284 (337)
T ss_dssp             TTTEEEEE---EECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCE-----EEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred             CCCceEee---ecCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCe-----EEEcCCccceeEEEECCCCCEEEEec
Confidence            77663332   35778899999999999999999999999999988763     34567788999999999999999999


Q ss_pred             CCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCC
Q psy11529        167 TDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQ  240 (244)
Q Consensus       167 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~  240 (244)
                      .||.|++||+                  ..++.+... .|   ...+.+++|+|++++|++++.||.|++|++.
T Consensus       285 ~dg~i~~~~~------------------~~~~~~~~~-~~---~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~  336 (337)
T 1gxr_A          285 KDNLLNAWRT------------------PYGASIFQS-KE---SSSVLSCDISVDDKYIVTGSGDKKATVYEVI  336 (337)
T ss_dssp             TTSEEEEEET------------------TTCCEEEEE-EC---SSCEEEEEECTTSCEEEEEETTSCEEEEEEE
T ss_pred             CCCcEEEEEC------------------CCCeEEEEe-cC---CCcEEEEEECCCCCEEEEecCCCeEEEEEEe
Confidence            9999999998                  555555443 34   7889999999999999999999999999973

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=1.2e-35  Score=232.03  Aligned_cols=210  Identities=15%  Similarity=0.245  Sum_probs=166.7

Q ss_pred             CCceEEEEEcCCCCeEEEecCCCeEEEeeeccCC-------CcceeeeeeccCC------------CceEEEEeCCCC--
Q psy11529          9 INPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAA-------NDWSQLDVLDGHD------------LKVTGIDWAPNT--   67 (244)
Q Consensus         9 ~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~-------~~~~~~~~~~~~~------------~~v~~~~~~~~~--   67 (244)
                      .+.|++++|+|+|++||+|+.||.|+||++....       ..++....+.+|.            ..|.+++|+|++  
T Consensus        28 ~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~  107 (447)
T 3dw8_B           28 ADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNA  107 (447)
T ss_dssp             GGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSS
T ss_pred             cCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCc
Confidence            5899999999999999999999999999997621       1223577888998            889999999988  


Q ss_pred             CeEEEEeCCccEEEEeeeCCCCCce-------------------------------------ee-EEEeccCcceEEEEE
Q psy11529         68 NRIVTCSADRNAYVWTQNNDDKKWK-------------------------------------PT-LVLLRINRAATCVKW  109 (244)
Q Consensus        68 ~~l~~~~~d~~i~iwd~~~~~~~~~-------------------------------------~~-~~~~~~~~~v~~~~~  109 (244)
                      .+|++++.|+.|++||+  .++...                                     +. ....+|...|.+++|
T Consensus       108 ~~l~s~s~d~~i~iw~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  185 (447)
T 3dw8_B          108 AQFLLSTNDKTIKLWKI--SERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI  185 (447)
T ss_dssp             SEEEEEECSSCEEEEEE--EEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred             ceEEEeCCCCeEEEEec--ccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence            78999999999999994  332210                                     00 112468899999999


Q ss_pred             CCCCCeEEEeeCCCeEEEEEeecCCCceEEEe------eecCCCCceeEEEecCCC-CEEEEeeCCCeEEEEEeeecccc
Q psy11529        110 SPLENKFAAGSGARLISVCYFESENDWWVAKH------IKKPIKSTITCLDWHPNN-HLLGCGSTDFKVRVFSAYIKDIE  182 (244)
Q Consensus       110 ~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~------~~~~~~~~v~~~~~~p~~-~~l~~~~~dg~i~i~d~~~~~~~  182 (244)
                      +|++++|+++ .|+.|++||++....  ....      ....|...|.+++|+|++ ++|++++.||.|++||++.....
T Consensus       186 ~~~~~~l~s~-~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~  262 (447)
T 3dw8_B          186 NSDYETYLSA-DDLRINLWHLEITDR--SFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALC  262 (447)
T ss_dssp             CTTSSEEEEE-CSSEEEEEETTEEEE--EEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSS
T ss_pred             cCCCCEEEEe-CCCeEEEEECCCCCc--eeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccc
Confidence            9999999998 799999999985432  1111      245678899999999998 99999999999999999432210


Q ss_pred             cCCCCCCCCccccccceeEEecCCCCCCC------------CeEEEEEecCCCEEEEeeCCCcEEEEeCCC
Q psy11529        183 SAPQSTNWGSKSTLGNCLVELNNSSSGGG------------WIHSVAFSKDGNKLCWTSHDGSINVRMSQQ  241 (244)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~  241 (244)
                                    ...+..+..|   ..            .|.+++|+|+|++|++++. +.|++||+++
T Consensus       263 --------------~~~~~~~~~~---~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~  315 (447)
T 3dw8_B          263 --------------DRHSKLFEEP---EDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNM  315 (447)
T ss_dssp             --------------CTTCEEECCC--------CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTC
T ss_pred             --------------cceeeEeccC---CCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCC
Confidence                          1115566665   43            8999999999999999998 9999999985

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=5.7e-36  Score=232.19  Aligned_cols=205  Identities=15%  Similarity=0.169  Sum_probs=170.9

Q ss_pred             eCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeC
Q psy11529          7 FGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNN   86 (244)
Q Consensus         7 ~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~   86 (244)
                      .|.+.|++++|+|++++|++++.|+.|++||+..  +  +....+.+|...|.+++|+|++++|++++.|+.|++||  +
T Consensus       137 ~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~--~--~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd--~  210 (420)
T 3vl1_A          137 AHVSEITKLKFFPSGEALISSSQDMQLKIWSVKD--G--SNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWE--C  210 (420)
T ss_dssp             SSSSCEEEEEECTTSSEEEEEETTSEEEEEETTT--C--CCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEE--T
T ss_pred             cccCccEEEEECCCCCEEEEEeCCCeEEEEeCCC--C--cCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeE--C
Confidence            4689999999999999999999999999999977  4  66778889999999999999999999999999999999  7


Q ss_pred             CCCCceeeEEEe-cc---------------------CcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeec
Q psy11529         87 DDKKWKPTLVLL-RI---------------------NRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKK  144 (244)
Q Consensus        87 ~~~~~~~~~~~~-~~---------------------~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~  144 (244)
                      .+++....+... .+                     ...+.+++|+|++++|++++.|+.|++||+++.+.   ......
T Consensus       211 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~  287 (420)
T 3vl1_A          211 GTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQ---TIQLPS  287 (420)
T ss_dssp             TTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCE---EEEECC
T ss_pred             CCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCce---eEEccc
Confidence            776643333211 12                     24455566789999999999999999999988764   344455


Q ss_pred             CCCCceeEEEecCCCC-EEEEeeCCCeEEEEEeeecccccCCCCCCCCcccccc-ceeEEecCCCCCCCCeEEEEEecCC
Q psy11529        145 PIKSTITCLDWHPNNH-LLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLG-NCLVELNNSSSGGGWIHSVAFSKDG  222 (244)
Q Consensus       145 ~~~~~v~~~~~~p~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~s~~~  222 (244)
                      .|...+.+++|+|+++ +|++++.||.|++||++                  .+ .++..+..|+  ...+.++.+ +++
T Consensus       288 ~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~------------------~~~~~~~~~~~~~--~~~v~~~~~-~~~  346 (420)
T 3vl1_A          288 KFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLR------------------SPECPVGEFLINE--GTPINNVYF-AAG  346 (420)
T ss_dssp             TTSSCEEEEEECSSCTTEEEEEETTSEEEEEETT------------------CTTSCSEEEEEST--TSCEEEEEE-ETT
T ss_pred             ccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcC------------------CCcCchhhhhccC--CCCceEEEe-CCC
Confidence            6788999999999998 99999999999999993                  33 3466676643  778888855 588


Q ss_pred             CEEEEeeCCCcEEEEeCCC
Q psy11529        223 NKLCWTSHDGSINVRMSQQ  241 (244)
Q Consensus       223 ~~l~~~~~dg~i~vwd~~~  241 (244)
                      ++|++++.||.|++|++.+
T Consensus       347 ~~l~s~~~d~~v~iw~~~~  365 (420)
T 3vl1_A          347 ALFVSSGFDTSIKLDIISD  365 (420)
T ss_dssp             EEEEEETTTEEEEEEEECC
T ss_pred             CEEEEecCCccEEEEeccC
Confidence            8999999999999999876

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=4e-35  Score=227.45  Aligned_cols=204  Identities=10%  Similarity=0.090  Sum_probs=168.8

Q ss_pred             CceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCCCC
Q psy11529         10 NPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDK   89 (244)
Q Consensus        10 ~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~   89 (244)
                      ..+....|+|++++|++++.|+.|++|++..  +  +....+.+|...|.+++|+|++++|++++.|+.|++||  +.++
T Consensus        98 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~--~--~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd--~~~~  171 (420)
T 3vl1_A           98 DYTAVDTAKLQMRRFILGTTEGDIKVLDSNF--N--LQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWS--VKDG  171 (420)
T ss_dssp             CEEEEEEECSSSCEEEEEETTSCEEEECTTS--C--EEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEE--TTTC
T ss_pred             CceEEEEEecCCCEEEEEECCCCEEEEeCCC--c--ceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEe--CCCC
Confidence            3445557899999999999999999999987  4  66667789999999999999999999999999999999  7776


Q ss_pred             CceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecC---------------------CCC
Q psy11529         90 KWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKP---------------------IKS  148 (244)
Q Consensus        90 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~---------------------~~~  148 (244)
                      +..  ..+..|...|.+++|+|++++|++++.|+.|++||+++++....... ...                     +..
T Consensus       172 ~~~--~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~  248 (420)
T 3vl1_A          172 SNP--RTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNR-KENPHDGVNSIALFVGTDRQLHEISTS  248 (420)
T ss_dssp             CCC--EEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECB-TTBTTCCEEEEEEEECCCSSCGGGCCC
T ss_pred             cCc--eEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeec-CCCCCCCccEEEEecCCcceeeecccC
Confidence            643  34467999999999999999999999999999999988764111110 001                     134


Q ss_pred             ceeEEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCC-EEEE
Q psy11529        149 TITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGN-KLCW  227 (244)
Q Consensus       149 ~v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~  227 (244)
                      .+.+++|+|++++|++++.||.|++||+                  ..++....+...+  ...|.+++|+|+++ +|++
T Consensus       249 ~v~~~~~s~~~~~l~~~~~dg~i~i~d~------------------~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~l~~  308 (420)
T 3vl1_A          249 KKNNLEFGTYGKYVIAGHVSGVITVHNV------------------FSKEQTIQLPSKF--TCSCNSLTVDGNNANYIYA  308 (420)
T ss_dssp             CCCTTCSSCTTEEEEEEETTSCEEEEET------------------TTCCEEEEECCTT--SSCEEEEEECSSCTTEEEE
T ss_pred             cccceEEcCCCCEEEEEcCCCeEEEEEC------------------CCCceeEEccccc--CCCceeEEEeCCCCCEEEE
Confidence            5666777899999999999999999999                  5566666554422  78999999999999 9999


Q ss_pred             eeCCCcEEEEeCCCC
Q psy11529        228 TSHDGSINVRMSQQV  242 (244)
Q Consensus       228 ~~~dg~i~vwd~~~~  242 (244)
                      ++.||.|++||+++.
T Consensus       309 g~~dg~i~vwd~~~~  323 (420)
T 3vl1_A          309 GYENGMLAQWDLRSP  323 (420)
T ss_dssp             EETTSEEEEEETTCT
T ss_pred             EeCCCeEEEEEcCCC
Confidence            999999999999864

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=6.1e-35  Score=225.39  Aligned_cols=209  Identities=16%  Similarity=0.191  Sum_probs=171.1

Q ss_pred             EeCCCceEEEEEcC-CCCeEEEecCCCeEEEeeeccCCCcc-----eeeeeeccCCCceEEEEeCCCC-CeEEEEeCCcc
Q psy11529          6 SFGINPVTTHAWNN-TRQQLAFTPNNQEVHLYQYEKAANDW-----SQLDVLDGHDLKVTGIDWAPNT-NRIVTCSADRN   78 (244)
Q Consensus         6 ~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~v~~~~~~~~~~-----~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~   78 (244)
                      ..|.++|++++|+| ++++|++|+.||.|+||++..  +..     ..+..+.+|...|.+++|+|++ .+|++++.|+.
T Consensus        78 ~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~--~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~  155 (402)
T 2aq5_A           78 CGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPD--GGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNV  155 (402)
T ss_dssp             CCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCT--TCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSC
T ss_pred             ecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccC--CCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCE
Confidence            34789999999999 999999999999999999977  322     3567788999999999999998 69999999999


Q ss_pred             EEEEeeeCCCCCceeeEEE--eccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCc-eeEEEe
Q psy11529         79 AYVWTQNNDDKKWKPTLVL--LRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKST-ITCLDW  155 (244)
Q Consensus        79 i~iwd~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~-v~~~~~  155 (244)
                      |++||  +.+++.  ...+  ..|...+.+++|+|++++|++++.|+.|++||+++++.   .......|.+. +.++.|
T Consensus       156 i~iwd--~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~  228 (402)
T 2aq5_A          156 ILVWD--VGTGAA--VLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTV---VAEKDRPHEGTRPVHAVF  228 (402)
T ss_dssp             EEEEE--TTTTEE--EEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEE---EEEEECSSCSSSCCEEEE
T ss_pred             EEEEE--CCCCCc--cEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCce---eeeeccCCCCCcceEEEE
Confidence            99999  777653  3344  56889999999999999999999999999999998754   22222556554 899999


Q ss_pred             cCCCCEEEEe---eCCCeEEEEEeeecccccCCCCCCCCccccccceeEEec-CCCCCCCCeEEEEEecCCCEEEE-eeC
Q psy11529        156 HPNNHLLGCG---STDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELN-NSSSGGGWIHSVAFSKDGNKLCW-TSH  230 (244)
Q Consensus       156 ~p~~~~l~~~---~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~-~~~  230 (244)
                      +|++++|++|   +.|+.|++||++..                 ...+.... .+   ...+.+++|+|++++|++ ++.
T Consensus       229 ~~~~~~l~~g~~~~~d~~i~iwd~~~~-----------------~~~~~~~~~~~---~~~v~~~~~s~~~~~l~~~g~~  288 (402)
T 2aq5_A          229 VSEGKILTTGFSRMSERQVALWDTKHL-----------------EEPLSLQELDT---SSGVLLPFFDPDTNIVYLCGKG  288 (402)
T ss_dssp             CSTTEEEEEEECTTCCEEEEEEETTBC-----------------SSCSEEEECCC---CSSCEEEEEETTTTEEEEEETT
T ss_pred             cCCCcEEEEeccCCCCceEEEEcCccc-----------------cCCceEEeccC---CCceeEEEEcCCCCEEEEEEcC
Confidence            9999999999   78999999998421                 11222222 34   678999999999998865 557


Q ss_pred             CCcEEEEeCCCCC
Q psy11529        231 DGSINVRMSQQVL  243 (244)
Q Consensus       231 dg~i~vwd~~~~~  243 (244)
                      ||.|++||+++..
T Consensus       289 dg~i~i~d~~~~~  301 (402)
T 2aq5_A          289 DSSIRYFEITSEA  301 (402)
T ss_dssp             CSCEEEEEECSST
T ss_pred             CCeEEEEEecCCC
Confidence            9999999998653

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=8.1e-35  Score=238.97  Aligned_cols=204  Identities=18%  Similarity=0.219  Sum_probs=174.1

Q ss_pred             EEeCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEee
Q psy11529          5 YSFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQ   84 (244)
Q Consensus         5 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~   84 (244)
                      ...|...|.+++|+|++++|++|+.|+.|+|||+..  +  .....+.+|...|.+++|+|++++|++++.|++|++|| 
T Consensus       426 ~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~--~--~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd-  500 (694)
T 3dm0_A          426 LTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAA--G--VSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWN-  500 (694)
T ss_dssp             EECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT--T--EEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC-
T ss_pred             ecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCC--C--cceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEE-
Confidence            345789999999999999999999999999999977  5  67788999999999999999999999999999999999 


Q ss_pred             eCCCCCceeeEE--EeccCcceEEEEECCCC--CeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCC
Q psy11529         85 NNDDKKWKPTLV--LLRINRAATCVKWSPLE--NKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNH  160 (244)
Q Consensus        85 ~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~--~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~  160 (244)
                       ..... .....  ..+|...|.+++|+|++  ..+++++.|+.|++||++..+.    ......|.+.|++++|+|+++
T Consensus       501 -~~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~----~~~~~~h~~~v~~v~~spdg~  574 (694)
T 3dm0_A          501 -TLGEC-KYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKL----RSTLAGHTGYVSTVAVSPDGS  574 (694)
T ss_dssp             -TTSCE-EEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCE----EEEECCCSSCEEEEEECTTSS
T ss_pred             -CCCCc-ceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcE----EEEEcCCCCCEEEEEEeCCCC
Confidence             54332 11111  12477889999999986  5799999999999999988764    556678899999999999999


Q ss_pred             EEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCC
Q psy11529        161 LLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQ  240 (244)
Q Consensus       161 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~  240 (244)
                      +|++++.||.|++||+                  ..++.+..+..    ...+.+++|+|++.+|++++ |+.|++||++
T Consensus       575 ~l~sg~~Dg~i~iwd~------------------~~~~~~~~~~~----~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~  631 (694)
T 3dm0_A          575 LCASGGKDGVVLLWDL------------------AEGKKLYSLEA----NSVIHALCFSPNRYWLCAAT-EHGIKIWDLE  631 (694)
T ss_dssp             EEEEEETTSBCEEEET------------------TTTEEEECCBC----SSCEEEEEECSSSSEEEEEE-TTEEEEEETT
T ss_pred             EEEEEeCCCeEEEEEC------------------CCCceEEEecC----CCcEEEEEEcCCCcEEEEEc-CCCEEEEECC
Confidence            9999999999999999                  56777776655    56799999999998887765 5679999997


Q ss_pred             CC
Q psy11529        241 QV  242 (244)
Q Consensus       241 ~~  242 (244)
                      +.
T Consensus       632 ~~  633 (694)
T 3dm0_A          632 SK  633 (694)
T ss_dssp             TT
T ss_pred             CC
Confidence            53

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=4.3e-35  Score=223.07  Aligned_cols=207  Identities=14%  Similarity=0.189  Sum_probs=172.4

Q ss_pred             EEeCCCceEEEEEcCC---CCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEE
Q psy11529          5 YSFGINPVTTHAWNNT---RQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYV   81 (244)
Q Consensus         5 ~~~~~~~v~~~~~~~~---~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i   81 (244)
                      +..|.+.|++++|+|+   |++|++|+.||.|++|++..  ........+.+|...|.+++|+|++++|++++.|+.|++
T Consensus        35 ~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~--~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~i  112 (368)
T 3mmy_A           35 TSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQD--SGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKM  112 (368)
T ss_dssp             SSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECT--TSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred             ccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCC--CCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEE
Confidence            3457899999999999   69999999999999999976  222455788889999999999999999999999999999


Q ss_pred             EeeeCCCCCceeeEEEeccCcceEEEEE--CCCCCeEEEeeCCCeEEEEEeecCCCceEEE-------------------
Q psy11529         82 WTQNNDDKKWKPTLVLLRINRAATCVKW--SPLENKFAAGSGARLISVCYFESENDWWVAK-------------------  140 (244)
Q Consensus        82 wd~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-------------------  140 (244)
                      ||  +.+++.   .....|...+.+++|  +|++++|++++.|+.|++||+++.+......                   
T Consensus       113 wd--~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (368)
T 3mmy_A          113 WD--LSSNQA---IQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVAT  187 (368)
T ss_dssp             EE--TTTTEE---EEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEETTEEEEEE
T ss_pred             EE--cCCCCc---eeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecCCeeEEEe
Confidence            99  777663   334678999999999  9999999999999999999987664311110                   


Q ss_pred             -------------------------------------------------------------------eeecCCCC-----
Q psy11529        141 -------------------------------------------------------------------HIKKPIKS-----  148 (244)
Q Consensus       141 -------------------------------------------------------------------~~~~~~~~-----  148 (244)
                                                                                         .....|..     
T Consensus       188 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~  267 (368)
T 3mmy_A          188 AERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNT  267 (368)
T ss_dssp             GGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----
T ss_pred             CCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccc
Confidence                                                                               00011111     


Q ss_pred             -------ceeEEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecC
Q psy11529        149 -------TITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKD  221 (244)
Q Consensus       149 -------~v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  221 (244)
                             .|++++|+|++++|++++.||.|++||+                  ..++++..+..|   ...|.+++|+|+
T Consensus       268 ~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~------------------~~~~~~~~~~~~---~~~v~~~~~s~~  326 (368)
T 3mmy_A          268 SAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDK------------------DARTKLKTSEQL---DQPISACCFNHN  326 (368)
T ss_dssp             CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEET------------------TTTEEEEECCCC---SSCEEEEEECTT
T ss_pred             cccccccceEEEEEecCCCEEEEEccCCeEEEEEC------------------CCCcEEEEecCC---CCCceEEEECCC
Confidence                   5999999999999999999999999999                  678888899988   899999999999


Q ss_pred             CCEEEEeeCCCcEEEEeC
Q psy11529        222 GNKLCWTSHDGSINVRMS  239 (244)
Q Consensus       222 ~~~l~~~~~dg~i~vwd~  239 (244)
                      |++|++++.|+..+.|++
T Consensus       327 g~~l~~~s~d~~~~~~~~  344 (368)
T 3mmy_A          327 GNIFAYASSYDWSKGHEF  344 (368)
T ss_dssp             SSCEEEEECCCSTTCGGG
T ss_pred             CCeEEEEecccccccccc
Confidence            999999999886555554

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=1.1e-34  Score=225.12  Aligned_cols=225  Identities=17%  Similarity=0.289  Sum_probs=181.2

Q ss_pred             CCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCC
Q psy11529          8 GINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNND   87 (244)
Q Consensus         8 ~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~   87 (244)
                      |.+.|++++|+|+|++|++|+.||.|+|||+..  +  +.+..+.+|...+.+++++  +..|++|+.|+.+++||  ..
T Consensus       146 ~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~--~--~~~~~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d--~~  217 (420)
T 4gga_A          146 PGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQ--Q--KRLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHD--VR  217 (420)
T ss_dssp             TTCCEEEEEECTTSSEEEEEETTSCEEEEETTT--T--EEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEE--TT
T ss_pred             CCCcEEEEEECCCCCEEEEEECCCeEEEEEcCC--C--cEEEEEeCCCCceEEEeeC--CCEEEEEeCCCceeEee--ec
Confidence            367899999999999999999999999999987  5  7888999999999998875  67999999999999999  55


Q ss_pred             CCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCC-EEEE--
Q psy11529         88 DKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNH-LLGC--  164 (244)
Q Consensus        88 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~-~l~~--  164 (244)
                      .... ....+..|...+..+.|+|+++++++++.|+.+++|+...++...........+...|.+++|+|++. ++++  
T Consensus       218 ~~~~-~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~  296 (420)
T 4gga_A          218 VAEH-HVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGG  296 (420)
T ss_dssp             SSSC-EEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEE
T ss_pred             ccce-eeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEe
Confidence            4432 34456789999999999999999999999999999999887653333455667888999999999664 5554  


Q ss_pred             eeCCCeEEEEEeeecccccCC-------------CCC-C---CC---c-----cccccceeEEecCCCCCCCCeEEEEEe
Q psy11529        165 GSTDFKVRVFSAYIKDIESAP-------------QST-N---WG---S-----KSTLGNCLVELNNSSSGGGWIHSVAFS  219 (244)
Q Consensus       165 ~~~dg~i~i~d~~~~~~~~~~-------------~~~-~---~~---~-----~~~~~~~~~~~~~~~~~~~~v~~~~~s  219 (244)
                      |+.|+.|++||+++.......             ... .   .+   .     ...+++++..+.+|   ...|.+++|+
T Consensus       297 gs~D~~I~iwd~~t~~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH---~~~V~~l~~s  373 (420)
T 4gga_A          297 GTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGH---TSRVLSLTMS  373 (420)
T ss_dssp             CTTTCEEEEEETTTTEEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCC---SSCEEEEEEC
T ss_pred             ecCCCEEEEEeCCccccceeeccccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCC---CCCEEEEEEc
Confidence            457999999998644322110             000 0   00   0     23467788899999   9999999999


Q ss_pred             cCCCEEEEeeCCCcEEEEeCCCCCC
Q psy11529        220 KDGNKLCWTSHDGSINVRMSQQVLP  244 (244)
Q Consensus       220 ~~~~~l~~~~~dg~i~vwd~~~~~p  244 (244)
                      |||++|++|+.|++|+|||+.+..|
T Consensus       374 pdg~~l~S~s~D~tvriWdv~~~~~  398 (420)
T 4gga_A          374 PDGATVASAAADETLRLWRCFELDP  398 (420)
T ss_dssp             TTSSCEEEEETTTEEEEECCSCSSC
T ss_pred             CCCCEEEEEecCCeEEEEECCCCCc
Confidence            9999999999999999999976543

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=3.2e-34  Score=214.39  Aligned_cols=209  Identities=19%  Similarity=0.329  Sum_probs=171.2

Q ss_pred             CCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCC-------------------------------------Ccceeeee
Q psy11529          8 GINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAA-------------------------------------NDWSQLDV   50 (244)
Q Consensus         8 ~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~-------------------------------------~~~~~~~~   50 (244)
                      |...|++++|+|++++|++|+.|+.|++|++++..                                     ........
T Consensus        66 ~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~  145 (318)
T 4ggc_A           66 PGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVAT  145 (318)
T ss_dssp             TTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEE
T ss_pred             CCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeecCCCEEEEEecCCceEeeecCCCceeEEE
Confidence            46789999999999999999999999999986511                                     00012234


Q ss_pred             eccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCCCCCc--eeeEEEeccCcceEEEEECCCCCeE---EEeeCCCeE
Q psy11529         51 LDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKW--KPTLVLLRINRAATCVKWSPLENKF---AAGSGARLI  125 (244)
Q Consensus        51 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l---~~~~~d~~i  125 (244)
                      +.+|...+..+.+++++++|++++.|+.|++||  ..+++.  ........+...+.+++++|++..+   ++++.++.|
T Consensus       146 ~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd--~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i  223 (318)
T 4ggc_A          146 LSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWP--SAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHI  223 (318)
T ss_dssp             EECCSSCEEEEEECTTSSEEEEEETTSCEEEEE--SSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEE
T ss_pred             EcCccCceEEEEEcCCCCEEEEEecCcceeEEE--CCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEE
Confidence            456788899999999999999999999999999  555442  2234445677889999999986543   356678999


Q ss_pred             EEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEee--CCCeEEEEEeeecccccCCCCCCCCccccccceeEEe
Q psy11529        126 SVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGS--TDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVEL  203 (244)
Q Consensus       126 ~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (244)
                      ++||.+....     .....+...+..+.|+|+++.+++++  .|+.|++||+                  .+++++..+
T Consensus       224 ~lwd~~~~~~-----~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~------------------~~~~~~~~l  280 (318)
T 4ggc_A          224 RIWNVCSGAC-----LSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKY------------------PTMAKVAEL  280 (318)
T ss_dssp             EEEETTTCCE-----EEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEET------------------TTCCEEEEE
T ss_pred             EEEecccccc-----cccccceeeeeeeeecccccceEEEEEcCCCEEEEEEC------------------CCCcEEEEE
Confidence            9999888764     22334557899999999998877654  7999999999                  778899999


Q ss_pred             cCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCCCCC
Q psy11529        204 NNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQVLP  244 (244)
Q Consensus       204 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~p  244 (244)
                      .+|   ...|++++|+|||++|++|+.||+|+|||+.++-|
T Consensus       281 ~gH---~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~dP  318 (318)
T 4ggc_A          281 KGH---TSRVLSLTMSPDGATVASAAADETLRLWRCFELDP  318 (318)
T ss_dssp             CCC---SSCEEEEEECTTSSCEEEEETTTEEEEECCSCCCC
T ss_pred             cCC---CCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCCC
Confidence            999   99999999999999999999999999999999877

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.6e-35  Score=240.42  Aligned_cols=216  Identities=18%  Similarity=0.300  Sum_probs=183.8

Q ss_pred             EeCCCceEEEEEcCC--CCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCC--CCeEEEEeCCccEEE
Q psy11529          6 SFGINPVTTHAWNNT--RQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPN--TNRIVTCSADRNAYV   81 (244)
Q Consensus         6 ~~~~~~v~~~~~~~~--~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~i   81 (244)
                      ..|.++|++++|+|+  +++|++|+.||.|++||+.+  +.......+.+|...|.+++|+|+  ++++++++.||.|++
T Consensus        50 ~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~--~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~v  127 (753)
T 3jro_A           50 TGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEEN--GRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSV  127 (753)
T ss_dssp             CCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEET--TEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEE
T ss_pred             cCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCC--CcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEE
Confidence            346899999999998  99999999999999999988  544578888899999999999998  999999999999999


Q ss_pred             EeeeCCCCCceeeEEEeccCcceEEEEECC-------------CCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCC
Q psy11529         82 WTQNNDDKKWKPTLVLLRINRAATCVKWSP-------------LENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKS  148 (244)
Q Consensus        82 wd~~~~~~~~~~~~~~~~~~~~v~~~~~~~-------------~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~  148 (244)
                      ||  +.++..........|...+.+++|+|             ++..+++++.||.|++||++..............|..
T Consensus       128 wd--l~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~  205 (753)
T 3jro_A          128 VE--FKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSD  205 (753)
T ss_dssp             EE--CCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSS
T ss_pred             EE--eecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCC
Confidence            99  66665455566678999999999999             5899999999999999999988765555667778899


Q ss_pred             ceeEEEecCC---CCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEE
Q psy11529        149 TITCLDWHPN---NHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKL  225 (244)
Q Consensus       149 ~v~~~~~~p~---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  225 (244)
                      .|++++|+|+   +++|++++.||.|++||++.....             ..........|   ...|.+++|+|+|++|
T Consensus       206 ~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~-------------~~~~~~~~~~~---~~~v~~l~~spdg~~l  269 (753)
T 3jro_A          206 WVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGP-------------WKKTLLKEEKF---PDVLWRASWSLSGNVL  269 (753)
T ss_dssp             CEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSC-------------CBCCBSSSSCC---SSCCCCEEECTTTCCE
T ss_pred             cEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCc-------------ceeEEeccCCC---CCceEEEEEcCCCCEE
Confidence            9999999999   899999999999999999532110             01122223345   7889999999999999


Q ss_pred             EEeeCCCcEEEEeCCC
Q psy11529        226 CWTSHDGSINVRMSQQ  241 (244)
Q Consensus       226 ~~~~~dg~i~vwd~~~  241 (244)
                      ++++.||.|++|+++.
T Consensus       270 ~s~s~Dg~I~vwd~~~  285 (753)
T 3jro_A          270 ALSGGDNKVTLWKENL  285 (753)
T ss_dssp             EEECSSSCEECCBCCS
T ss_pred             EEEcCCCEEEEEecCC
Confidence            9999999999999874

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.3e-35  Score=234.79  Aligned_cols=220  Identities=13%  Similarity=0.106  Sum_probs=165.4

Q ss_pred             eCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEE--EeCCCC-CeEEEEeCCccEEEEe
Q psy11529          7 FGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGI--DWAPNT-NRIVTCSADRNAYVWT   83 (244)
Q Consensus         7 ~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~-~~l~~~~~d~~i~iwd   83 (244)
                      .|...|++++|++++ .|++|+.||+|++||+.+  +. .+...+.+|...|.++  +|+|++ .+|++++.|++|+|||
T Consensus       264 ~h~~~v~sv~~s~~~-~lasgs~DgtV~lWD~~~--~~-~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD  339 (524)
T 2j04_B          264 LADSLITTFDFLSPT-TVVCGFKNGFVAEFDLTD--PE-VPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFN  339 (524)
T ss_dssp             CTTTCEEEEEESSSS-EEEEEETTSEEEEEETTB--CS-SCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEEC
T ss_pred             cCCCCEEEEEecCCC-eEEEEeCCCEEEEEECCC--CC-CceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEE
Confidence            467899999999864 899999999999999986  21 3455688999999999  578887 8999999999999999


Q ss_pred             eeCCCCCceeeEEEeccC--cceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCE
Q psy11529         84 QNNDDKKWKPTLVLLRIN--RAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHL  161 (244)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~  161 (244)
                        +++++....+  .+|.  ..+.+++|+|+++.+++++.|++|++||++....    .....+|.+.|++++|+|+|++
T Consensus       340 --~~~~~~~~~~--~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~----~~~l~gH~~~V~sva~Sp~g~~  411 (524)
T 2j04_B          340 --PKDIATTKTT--VSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFA----VHPLVSRETTITAIGVSRLHPM  411 (524)
T ss_dssp             --GGGHHHHCEE--EEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTC----CEEEEECSSCEEEEECCSSCCB
T ss_pred             --CCCCCccccc--ccccccCcccceEeCCCcCeEEEeCCCCcEEEEECccccc----ceeeecCCCceEEEEeCCCCCe
Confidence              6665543333  2333  3588999999999999999999999999998765    2334568899999999999999


Q ss_pred             EEEeeCCCeEEEEEeeecccccCCCC-----------CCCCcc---------------ccccceeEEecCCCCCCCCeEE
Q psy11529        162 LGCGSTDFKVRVFSAYIKDIESAPQS-----------TNWGSK---------------STLGNCLVELNNSSSGGGWIHS  215 (244)
Q Consensus       162 l~~~~~dg~i~i~d~~~~~~~~~~~~-----------~~~~~~---------------~~~~~~~~~~~~~~~~~~~v~~  215 (244)
                      |++|+.||+|++||+....+......           ..+...               ...+..+..+.+|   ...|.+
T Consensus       412 l~Sgs~Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh---~~~V~~  488 (524)
T 2j04_B          412 VLAGSADGSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAH---GINITC  488 (524)
T ss_dssp             CEEEETTTEEECCBSCSSTTTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC-------------C---CCSCCC
T ss_pred             EEEEECCCEEEEEechHhhccccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCC---CceEEE
Confidence            99999999999999754322211000           000000               0124566677788   899999


Q ss_pred             EEEecCCC---EEEEeeCCCcEEEEeCCC
Q psy11529        216 VAFSKDGN---KLCWTSHDGSINVRMSQQ  241 (244)
Q Consensus       216 ~~~s~~~~---~l~~~~~dg~i~vwd~~~  241 (244)
                      ++|+|++.   +|++|+.||.|+||+++-
T Consensus       489 Vafsp~~~~~~~lAsg~~~g~vrlw~l~~  517 (524)
T 2j04_B          489 TKWNETSAGGKCYAFSNSAGLLTLEYLSL  517 (524)
T ss_dssp             EEECCSTTTTTEEEEECTTSEEEEEECSC
T ss_pred             EECCCCCCccHHHHhhccCceEEEEEccc
Confidence            99999964   999999999999999874

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.4e-34  Score=242.51  Aligned_cols=205  Identities=12%  Similarity=0.073  Sum_probs=167.2

Q ss_pred             eCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeC
Q psy11529          7 FGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNN   86 (244)
Q Consensus         7 ~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~   86 (244)
                      -|.+.|++++|+|++++||+|+.||.|+||+...  .  +....+ .|...|.+++|+| +++|++++.|++|++||  +
T Consensus        15 gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~--~--~~~~~~-~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd--~   86 (902)
T 2oaj_A           15 GMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQ--V--EVVIKL-EDRSAIKEMRFVK-GIYLVVINAKDTVYVLS--L   86 (902)
T ss_dssp             ECSSCEEEEEEETTTTEEEEEETTSEEEEECSTT--C--EEEEEC-SSCCCEEEEEEET-TTEEEEEETTCEEEEEE--T
T ss_pred             CCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCC--c--EEEEEc-CCCCCEEEEEEcC-CCEEEEEECcCeEEEEE--C
Confidence            3689999999999999999999999999999876  3  333333 4788999999999 88999999999999999  7


Q ss_pred             CCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEE-------eeecCCCCceeEEEecCC-
Q psy11529         87 DDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAK-------HIKKPIKSTITCLDWHPN-  158 (244)
Q Consensus        87 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-------~~~~~~~~~v~~~~~~p~-  158 (244)
                      .+++....+   .+...|++++|+|++++|++|+.|+.|++||++.........       .....|.+.|.+++|+|+ 
T Consensus        87 ~~~~~~~~~---~~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~  163 (902)
T 2oaj_A           87 YSQKVLTTV---FVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRD  163 (902)
T ss_dssp             TTCSEEEEE---ECSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTE
T ss_pred             CCCcEEEEE---cCCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCC
Confidence            777654333   367889999999999999999999999999998775310000       123567889999999996 


Q ss_pred             CCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCC---------------CCCCCCeEEEEEecCCC
Q psy11529        159 NHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNS---------------SSGGGWIHSVAFSKDGN  223 (244)
Q Consensus       159 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~v~~~~~s~~~~  223 (244)
                      +..+++|+.||.| +||++                  .++.+..+..|               ..+...|.+++|+|+|+
T Consensus       164 ~~~l~~g~~dg~v-lWd~~------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~  224 (902)
T 2oaj_A          164 IGTVLISYEYVTL-TYSLV------------------ENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSL  224 (902)
T ss_dssp             EEEEEEECSSCEE-EEETT------------------TTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSS
T ss_pred             CCEEEEEeCCCcE-EEECC------------------CCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCC
Confidence            4789999999999 99994                  44444444332               00046799999999999


Q ss_pred             EEEEeeCCCcEEEEeCCC
Q psy11529        224 KLCWTSHDGSINVRMSQQ  241 (244)
Q Consensus       224 ~l~~~~~dg~i~vwd~~~  241 (244)
                      +|++++.||.|++||+++
T Consensus       225 ~lasgs~Dg~i~lWd~~~  242 (902)
T 2oaj_A          225 HIITIHEDNSLVFWDANS  242 (902)
T ss_dssp             EEEEEETTCCEEEEETTT
T ss_pred             EEEEEECCCeEEEEECCC
Confidence            999999999999999975

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=1.9e-34  Score=240.50  Aligned_cols=209  Identities=15%  Similarity=0.169  Sum_probs=183.3

Q ss_pred             eeEEeCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEE
Q psy11529          3 EVYSFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVW   82 (244)
Q Consensus         3 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw   82 (244)
                      ..+..|.+.|++++|+|++++|++++.+|.|+|||+.+  +  .....+.+|...|.+++|+|++++|++++.|+.|++|
T Consensus         7 ~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~--~--~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw   82 (814)
T 3mkq_A            7 KTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYET--Q--VEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVF   82 (814)
T ss_dssp             EEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTT--T--EEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEE
T ss_pred             eeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCC--C--ceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEE
Confidence            34566799999999999999999999999999999977  5  7788889999999999999999999999999999999


Q ss_pred             eeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecC-CCCE
Q psy11529         83 TQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHP-NNHL  161 (244)
Q Consensus        83 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~  161 (244)
                      |  ..+++..  ..+..|...|.+++|+|++++|++++.|+.|++||++.+..   .......|...+.+++|+| +++.
T Consensus        83 ~--~~~~~~~--~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~---~~~~~~~~~~~v~~~~~~p~~~~~  155 (814)
T 3mkq_A           83 N--YNTGEKV--VDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWA---LEQTFEGHEHFVMCVAFNPKDPST  155 (814)
T ss_dssp             E--TTTCCEE--EEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSE---EEEEEECCSSCEEEEEEETTEEEE
T ss_pred             E--CCCCcEE--EEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCce---EEEEEcCCCCcEEEEEEEcCCCCE
Confidence            9  7777643  34467899999999999999999999999999999988743   4556667889999999999 8899


Q ss_pred             EEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEec--CCCEEEEeeCCCcEEEEeC
Q psy11529        162 LGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSK--DGNKLCWTSHDGSINVRMS  239 (244)
Q Consensus       162 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~vwd~  239 (244)
                      |++++.||.|++||+                  ..++....+..++  ...+..++|+|  ++.+|++++.||.|++||+
T Consensus       156 l~~~~~dg~v~vwd~------------------~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~  215 (814)
T 3mkq_A          156 FASGCLDRTVKVWSL------------------GQSTPNFTLTTGQ--ERGVNYVDYYPLPDKPYMITASDDLTIKIWDY  215 (814)
T ss_dssp             EEEEETTSEEEEEET------------------TCSSCSEEEECCC--TTCCCEEEECCSTTCCEEEEECTTSEEEEEET
T ss_pred             EEEEeCCCeEEEEEC------------------CCCcceeEEecCC--CCCEEEEEEEECCCCCEEEEEeCCCEEEEEEC
Confidence            999999999999998                  4455555665552  58899999999  9999999999999999998


Q ss_pred             CCC
Q psy11529        240 QQV  242 (244)
Q Consensus       240 ~~~  242 (244)
                      ++.
T Consensus       216 ~~~  218 (814)
T 3mkq_A          216 QTK  218 (814)
T ss_dssp             TTT
T ss_pred             CCC
Confidence            753

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.4e-34  Score=222.06  Aligned_cols=201  Identities=18%  Similarity=0.240  Sum_probs=175.9

Q ss_pred             CCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCC
Q psy11529          8 GINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNND   87 (244)
Q Consensus         8 ~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~   87 (244)
                      |.+.|++++|+|++++|++++.||.|++|+...     .....+.+|...|.+++|+|++++|++++.|+.|++||  +.
T Consensus       107 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd--~~  179 (425)
T 1r5m_A          107 TTNQVTCLAWSHDGNSIVTGVENGELRLWNKTG-----ALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWN--VI  179 (425)
T ss_dssp             -CBCEEEEEECTTSSEEEEEETTSCEEEEETTS-----CEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEE--TT
T ss_pred             CCCceEEEEEcCCCCEEEEEeCCCeEEEEeCCC-----CeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEE--CC
Confidence            466999999999999999999999999999554     67788899999999999999999999999999999999  55


Q ss_pred             CCCcee------------------------------------------------------eEEEeccCcceEEEEECCCC
Q psy11529         88 DKKWKP------------------------------------------------------TLVLLRINRAATCVKWSPLE  113 (244)
Q Consensus        88 ~~~~~~------------------------------------------------------~~~~~~~~~~v~~~~~~~~~  113 (244)
                      +++...                                                      ...+..|...+.+++|+|++
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~  259 (425)
T 1r5m_A          180 SGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTN  259 (425)
T ss_dssp             TTEEEEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTT
T ss_pred             CCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCC
Confidence            543221                                                      11233567889999999999


Q ss_pred             CeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCcc
Q psy11529        114 NKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSK  193 (244)
Q Consensus       114 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  193 (244)
                      ++|++++.|+.|++||++..+.    ......|...+.+++|+|++ ++++++.|+.|++||+                 
T Consensus       260 ~~l~~~~~d~~i~i~d~~~~~~----~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~-----------------  317 (425)
T 1r5m_A          260 KLLLSASDDGTLRIWHGGNGNS----QNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSL-----------------  317 (425)
T ss_dssp             TEEEEEETTSCEEEECSSSBSC----SEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEET-----------------
T ss_pred             CEEEEEcCCCEEEEEECCCCcc----ceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEEC-----------------
Confidence            9999999999999999998765    34446678899999999999 9999999999999999                 


Q ss_pred             ccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCC
Q psy11529        194 STLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQ  241 (244)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~  241 (244)
                       ..++.+..+..|   ...+.+++|+|++++|++++.||.|++||+++
T Consensus       318 -~~~~~~~~~~~~---~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~  361 (425)
T 1r5m_A          318 -KQNTLLALSIVD---GVPIFAGRISQDGQKYAVAFMDGQVNVYDLKK  361 (425)
T ss_dssp             -TTTEEEEEEECT---TCCEEEEEECTTSSEEEEEETTSCEEEEECHH
T ss_pred             -CCCcEeEecccC---CccEEEEEEcCCCCEEEEEECCCeEEEEECCC
Confidence             667888888888   88999999999999999999999999999874

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=8.2e-35  Score=224.05  Aligned_cols=205  Identities=15%  Similarity=0.240  Sum_probs=172.1

Q ss_pred             EeCCCceEEEEEcCC----C---CeEEEecCCCeEEEeeeccCCCccee-----eeeeccC-----CCceEEEEeC----
Q psy11529          6 SFGINPVTTHAWNNT----R---QQLAFTPNNQEVHLYQYEKAANDWSQ-----LDVLDGH-----DLKVTGIDWA----   64 (244)
Q Consensus         6 ~~~~~~v~~~~~~~~----~---~~l~~~~~d~~v~v~~~~~~~~~~~~-----~~~~~~~-----~~~v~~~~~~----   64 (244)
                      ..|..+|.+++|+|+    +   ++|++++.|+.|++|++..  +  +.     ...+..|     ...|.+++|+    
T Consensus        59 ~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~--~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  134 (397)
T 1sq9_A           59 FVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITR--E--DETKKVIFEKLDLLDSDMKKHSFWALKWGASND  134 (397)
T ss_dssp             ECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEE--C--TTTCCEEEEEECCSCTTGGGSCEEEEEEECCC-
T ss_pred             ecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccC--C--cccccccceeecccccccCCCcEEEEEEeeccC
Confidence            346899999999999    9   9999999999999999977  3  33     6677778     5999999999    


Q ss_pred             CCCCe-EEEEeCCccEEEEeeeCCC------CCcee-----eEEE-----eccCcceEEEEECCCCCeEEEeeCCCeEEE
Q psy11529         65 PNTNR-IVTCSADRNAYVWTQNNDD------KKWKP-----TLVL-----LRINRAATCVKWSPLENKFAAGSGARLISV  127 (244)
Q Consensus        65 ~~~~~-l~~~~~d~~i~iwd~~~~~------~~~~~-----~~~~-----~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i  127 (244)
                      |++++ |++++.|+.|++||+  .+      ++...     .+..     ..+...+.+++|+|++ ++++++.|+.|++
T Consensus       135 ~~~~~~l~~~~~dg~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i  211 (397)
T 1sq9_A          135 RLLSHRLVATDVKGTTYIWKF--HPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQI  211 (397)
T ss_dssp             ---CEEEEEEETTSCEEEEEE--ESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEE
T ss_pred             CCCceEEEEEeCCCcEEEEeC--CccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEE
Confidence            99999 999999999999994  44      33322     2222     3478889999999999 9999999999999


Q ss_pred             EEeecCCCceEEEeeecC---C---CCceeEEEecCCCCEEEEeeCC---CeEEEEEeeecccccCCCCCCCCccccccc
Q psy11529        128 CYFESENDWWVAKHIKKP---I---KSTITCLDWHPNNHLLGCGSTD---FKVRVFSAYIKDIESAPQSTNWGSKSTLGN  198 (244)
Q Consensus       128 ~d~~~~~~~~~~~~~~~~---~---~~~v~~~~~~p~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~  198 (244)
                      ||+++.+.    ......   |   ...+.+++|+|++++|++++.|   |.|++||+                  ..++
T Consensus       212 ~d~~~~~~----~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~------------------~~~~  269 (397)
T 1sq9_A          212 SELSTLRP----LYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYET------------------EFGE  269 (397)
T ss_dssp             EETTTTEE----EEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEET------------------TTCC
T ss_pred             EECCCCce----eEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEEC------------------CCCc
Confidence            99988754    333444   6   7899999999999999999999   99999999                  5677


Q ss_pred             eeEEecC-------------CCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCCC
Q psy11529        199 CLVELNN-------------SSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQV  242 (244)
Q Consensus       199 ~~~~~~~-------------~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~  242 (244)
                      .+..+..             |   ...|.+++|+|++++|++++.||.|++||+++.
T Consensus       270 ~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  323 (397)
T 1sq9_A          270 RIGSLSVPTHSSQASLGEFAH---SSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTK  323 (397)
T ss_dssp             EEEEECBC--------CCBSB---SSCEEEEEECSSSSEEEEEETTSEEEEEETTTT
T ss_pred             ccceeccCccccccccccccc---CCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence            7777877             7   899999999999999999999999999999764

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=2.6e-34  Score=220.50  Aligned_cols=204  Identities=15%  Similarity=0.110  Sum_probs=164.2

Q ss_pred             CCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCC-eEEEEeCCccEEEEeeeCC
Q psy11529          9 INPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTN-RIVTCSADRNAYVWTQNND   87 (244)
Q Consensus         9 ~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~   87 (244)
                      ...|.+++|+|++++|++++.|+.|++||++.     +.+..+.+|...|.+++|+|+++ +|++++.|+.|++||  +.
T Consensus       163 ~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~-----~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd--~~  235 (383)
T 3ei3_B          163 DYWYCCVDVSVSRQMLATGDSTGRLLLLGLDG-----HEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWD--LR  235 (383)
T ss_dssp             SCCEEEEEEETTTTEEEEEETTSEEEEEETTS-----CEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEE--GG
T ss_pred             CCCeEEEEECCCCCEEEEECCCCCEEEEECCC-----CEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEe--CC
Confidence            47799999999999999999999999999965     67888899999999999999998 899999999999999  55


Q ss_pred             CCCc-eeeEEEeccCcceEEEEECC-CCCeEEEeeCCCeEEEEEeecCCCceEEEeee---cCC----------CCceeE
Q psy11529         88 DKKW-KPTLVLLRINRAATCVKWSP-LENKFAAGSGARLISVCYFESENDWWVAKHIK---KPI----------KSTITC  152 (244)
Q Consensus        88 ~~~~-~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---~~~----------~~~v~~  152 (244)
                      +.+. ........|...+.+++|+| ++++|++++.|+.|++||+++.+.........   ..+          ...+..
T Consensus       236 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~  315 (383)
T 3ei3_B          236 NIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIV  315 (383)
T ss_dssp             GCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEE
T ss_pred             CCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceE
Confidence            4221 11222336899999999999 99999999999999999998876522222111   111          134455


Q ss_pred             EEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCC
Q psy11529        153 LDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDG  232 (244)
Q Consensus       153 ~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg  232 (244)
                      ++|+|++++  +++.||.|++||+                  .+++.+..+..+. ....+..++|+|++++|++++ ||
T Consensus       316 ~~~s~dg~~--s~s~d~~i~iwd~------------------~~~~~~~~l~~~~-~~~~~~~~~~s~~g~~l~s~s-d~  373 (383)
T 3ei3_B          316 AGRYPDDQL--LLNDKRTIDIYDA------------------NSGGLVHQLRDPN-AAGIISLNKFSPTGDVLASGM-GF  373 (383)
T ss_dssp             EECBCCTTT--CTTCCCCEEEEET------------------TTCCEEEEECBTT-BCSCCCEEEECTTSSEEEEEE-TT
T ss_pred             EEecCCccc--ccCCCCeEEEEec------------------CCCceeeeecCCC-CCceEEEEEEecCccEEEEec-CC
Confidence            777777766  7789999999999                  6788888887631 056788889999999999997 99


Q ss_pred             cEEEEeCCC
Q psy11529        233 SINVRMSQQ  241 (244)
Q Consensus       233 ~i~vwd~~~  241 (244)
                      .|++||+++
T Consensus       374 ~i~iw~~~~  382 (383)
T 3ei3_B          374 NILIWNRED  382 (383)
T ss_dssp             EEEEEECC-
T ss_pred             cEEEEecCC
Confidence            999999975

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=1.2e-34  Score=220.60  Aligned_cols=214  Identities=16%  Similarity=0.203  Sum_probs=171.6

Q ss_pred             EEeCCCceEEEEEcC-CCCeEEEecCCCeEEEeeeccCCCcceeeeee---ccCCCceEEEEeCCCCCeEEEEeCCccEE
Q psy11529          5 YSFGINPVTTHAWNN-TRQQLAFTPNNQEVHLYQYEKAANDWSQLDVL---DGHDLKVTGIDWAPNTNRIVTCSADRNAY   80 (244)
Q Consensus         5 ~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~d~~i~   80 (244)
                      +..|..+|.+++|+| ++++|++++.||.|++||+..  +  +....+   .+|...|.+++|+|++++|++++.|+.|+
T Consensus       111 ~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~--~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  186 (366)
T 3k26_A          111 YVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQT--D--TLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLK  186 (366)
T ss_dssp             EESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTT--T--EEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             ecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeec--C--eEEEEecccccccCceeEEEECCCCCEEEEecCCCCEE
Confidence            334689999999999 899999999999999999977  4  556666   68999999999999999999999999999


Q ss_pred             EEeeeCCCCCceee--------------------------EEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCC
Q psy11529         81 VWTQNNDDKKWKPT--------------------------LVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESEN  134 (244)
Q Consensus        81 iwd~~~~~~~~~~~--------------------------~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~  134 (244)
                      +||  +.+++....                          .....|...|.+++|+  ++++++++.|+.|++||++...
T Consensus       187 i~d--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~  262 (366)
T 3k26_A          187 LWR--INSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKME  262 (366)
T ss_dssp             EEE--SCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTT
T ss_pred             EEE--CCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCcc
Confidence            999  555432211                          1112378899999998  6799999999999999998764


Q ss_pred             C----------ceEEEeeecCCCCceeEEEecCC--CCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEE
Q psy11529        135 D----------WWVAKHIKKPIKSTITCLDWHPN--NHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVE  202 (244)
Q Consensus       135 ~----------~~~~~~~~~~~~~~v~~~~~~p~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (244)
                      .          ..........|...+.+++|+|+  +++|++++.||.|++||+...+.              .......
T Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~--------------~~~~~~~  328 (366)
T 3k26_A          263 DDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDP--------------HKAKCTT  328 (366)
T ss_dssp             CCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSG--------------GGCEEEE
T ss_pred             ccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCC--------------ccccceE
Confidence            3          11234455667788999999999  99999999999999999953321              1224445


Q ss_pred             ecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCC
Q psy11529        203 LNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQ  241 (244)
Q Consensus       203 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~  241 (244)
                      +..|. +...|++++|+|++++|++++.||.|++||+.+
T Consensus       329 ~~~~~-~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~  366 (366)
T 3k26_A          329 LTHHK-CGAAIRQTSFSRDSSILIAVCDDASIWRWDRLR  366 (366)
T ss_dssp             ECCTT-CCSCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred             Ecccc-cCCceEEEEeCCCCCeEEEEeCCCEEEEEEecC
Confidence            65541 147899999999999999999999999999864

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=3.5e-34  Score=217.39  Aligned_cols=227  Identities=12%  Similarity=0.065  Sum_probs=175.0

Q ss_pred             EEeCCCceEEEE------EcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCC----ceEEEE----eCCCCCeE
Q psy11529          5 YSFGINPVTTHA------WNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDL----KVTGID----WAPNTNRI   70 (244)
Q Consensus         5 ~~~~~~~v~~~~------~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~----~v~~~~----~~~~~~~l   70 (244)
                      +..|...|.+++      |+|++++|++++.|+.|++||+..  +. .....+..|.+    .+.+++    |+|+++++
T Consensus       107 ~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~--~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l  183 (357)
T 3i2n_A          107 VKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQ--KD-DPVANMEPVQGENKRDCWTVAFGNAYNQEERVV  183 (357)
T ss_dssp             ECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTS--CS-SCSEEECCCTTSCCCCEEEEEEECCCC-CCCEE
T ss_pred             EEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCC--CC-CcceeccccCCCCCCceEEEEEEeccCCCCCEE
Confidence            344688999995      578999999999999999999977  31 24555554443    889998    78899999


Q ss_pred             EEEeCCccEEEEeeeCCCCCceeeEEEeccCcceEEEEECC---CCCeEEEeeCCCeEEEEEeecCCCceEE-EeeecCC
Q psy11529         71 VTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSP---LENKFAAGSGARLISVCYFESENDWWVA-KHIKKPI  146 (244)
Q Consensus        71 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~d~~i~i~d~~~~~~~~~~-~~~~~~~  146 (244)
                      ++++.|+.|++||  +.+++.   .....+...+.+++|+|   ++.+|++++.|+.|++||++..+..... ......|
T Consensus       184 ~~~~~d~~i~i~d--~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  258 (357)
T 3i2n_A          184 CAGYDNGDIKLFD--LRNMAL---RWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAH  258 (357)
T ss_dssp             EEEETTSEEEEEE--TTTTEE---EEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECC
T ss_pred             EEEccCCeEEEEE--CccCce---eeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCC
Confidence            9999999999999  777663   33356788999999999   8999999999999999999887552222 1233478


Q ss_pred             CCceeEEEecCCCC-EEEEeeCCCeEEEEEeeecccccCCCC-CCCCccccccceeEEecCCCCCCCCeEEEEEecCCCE
Q psy11529        147 KSTITCLDWHPNNH-LLGCGSTDFKVRVFSAYIKDIESAPQS-TNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNK  224 (244)
Q Consensus       147 ~~~v~~~~~~p~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~  224 (244)
                      ...|.+++|+|+++ +|++++.||.|++||++.......... ..........+.+..+..|   ...|.+++|+|++++
T Consensus       259 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~---~~~v~~~~~s~~~~~  335 (357)
T 3i2n_A          259 KSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLS---TQPISSLDWSPDKRG  335 (357)
T ss_dssp             SSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECC---SSCEEEEEECSSSTT
T ss_pred             cCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccC---CCCeeEEEEcCCCCe
Confidence            89999999999998 899999999999999975432211000 0000001123567788888   899999999999999


Q ss_pred             EE-EeeCCCcEEEEeCCCC
Q psy11529        225 LC-WTSHDGSINVRMSQQV  242 (244)
Q Consensus       225 l~-~~~~dg~i~vwd~~~~  242 (244)
                      |+ +++.||.|++||+.++
T Consensus       336 l~~s~~~d~~i~iw~~~~~  354 (357)
T 3i2n_A          336 LCVCSSFDQTVRVLIVTKL  354 (357)
T ss_dssp             EEEEEETTSEEEEEEECC-
T ss_pred             EEEEecCCCcEEEEECCCc
Confidence            98 8999999999999875

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.8e-35  Score=225.41  Aligned_cols=208  Identities=20%  Similarity=0.305  Sum_probs=175.6

Q ss_pred             eCCCceEEEEEcCC-CCeEEEecCCCeEEEeeeccCCC-----cceeeeeeccCCCceEEEEeCCC-CCeEEEEeCCccE
Q psy11529          7 FGINPVTTHAWNNT-RQQLAFTPNNQEVHLYQYEKAAN-----DWSQLDVLDGHDLKVTGIDWAPN-TNRIVTCSADRNA   79 (244)
Q Consensus         7 ~~~~~v~~~~~~~~-~~~l~~~~~d~~v~v~~~~~~~~-----~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i   79 (244)
                      .|...|.+++|+|+ +++|++++.|+.|++||+.....     .......+..|...|.+++|+|+ +.+|++++.|+.|
T Consensus       111 ~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v  190 (416)
T 2pm9_A          111 NHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFA  190 (416)
T ss_dssp             CSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCE
T ss_pred             CCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCE
Confidence            46889999999998 89999999999999999977210     01122345679999999999998 7899999999999


Q ss_pred             EEEeeeCCCCCceeeEEEecc------CcceEEEEECCCC-CeEEEeeCCC---eEEEEEeecCCCceEEEeeec-CCCC
Q psy11529         80 YVWTQNNDDKKWKPTLVLLRI------NRAATCVKWSPLE-NKFAAGSGAR---LISVCYFESENDWWVAKHIKK-PIKS  148 (244)
Q Consensus        80 ~iwd~~~~~~~~~~~~~~~~~------~~~v~~~~~~~~~-~~l~~~~~d~---~i~i~d~~~~~~~~~~~~~~~-~~~~  148 (244)
                      ++||  +.+++....+  ..+      ...+.+++|+|++ .++++++.|+   .|++||++....   ...... .|..
T Consensus       191 ~iwd--~~~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~---~~~~~~~~~~~  263 (416)
T 2pm9_A          191 SIWD--LKAKKEVIHL--SYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANT---PLQTLNQGHQK  263 (416)
T ss_dssp             EEEE--TTTTEEEEEE--CCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTS---CSBCCCSCCSS
T ss_pred             EEEE--CCCCCcceEE--eccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCC---CcEEeecCccC
Confidence            9999  7776643333  333      6789999999997 6899999998   999999998643   234444 7889


Q ss_pred             ceeEEEecC-CCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCC-CEEE
Q psy11529        149 TITCLDWHP-NNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDG-NKLC  226 (244)
Q Consensus       149 ~v~~~~~~p-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~  226 (244)
                      .+.+++|+| ++++|++++.||.|++||+                  ..++.+..+..|   ...|.+++|+|++ .+|+
T Consensus       264 ~v~~~~~s~~~~~~l~s~~~dg~v~~wd~------------------~~~~~~~~~~~~---~~~v~~~~~s~~~~~~l~  322 (416)
T 2pm9_A          264 GILSLDWCHQDEHLLLSSGRDNTVLLWNP------------------ESAEQLSQFPAR---GNWCFKTKFAPEAPDLFA  322 (416)
T ss_dssp             CEEEEEECSSCSSCEEEEESSSEEEEECS------------------SSCCEEEEEECS---SSCCCCEEECTTCTTEEE
T ss_pred             ceeEEEeCCCCCCeEEEEeCCCCEEEeeC------------------CCCccceeecCC---CCceEEEEECCCCCCEEE
Confidence            999999999 8999999999999999999                  677888899998   8999999999999 8999


Q ss_pred             EeeCCCcEEEEeCCCC
Q psy11529        227 WTSHDGSINVRMSQQV  242 (244)
Q Consensus       227 ~~~~dg~i~vwd~~~~  242 (244)
                      +++.||.|++||+++.
T Consensus       323 s~~~d~~i~iw~~~~~  338 (416)
T 2pm9_A          323 CASFDNKIEVQTLQNL  338 (416)
T ss_dssp             ECCSSSEEEEEESCCC
T ss_pred             EEecCCcEEEEEccCC
Confidence            9999999999999865

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=7.2e-34  Score=221.20  Aligned_cols=225  Identities=15%  Similarity=0.272  Sum_probs=176.7

Q ss_pred             EEeCCCceEEEEEcCCCC-eEEEecCCCeEEEeeeccCCC---cceeeeeeccCCCceEEEEeCC-CCCeEEEEeCCccE
Q psy11529          5 YSFGINPVTTHAWNNTRQ-QLAFTPNNQEVHLYQYEKAAN---DWSQLDVLDGHDLKVTGIDWAP-NTNRIVTCSADRNA   79 (244)
Q Consensus         5 ~~~~~~~v~~~~~~~~~~-~l~~~~~d~~v~v~~~~~~~~---~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i   79 (244)
                      +..|...|.+++|+|++. +|++|+.||.|++|++.....   .......+.+|...|.+++|+| ++.+|++++.|+.|
T Consensus       177 ~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i  256 (430)
T 2xyi_A          177 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKL  256 (430)
T ss_dssp             EECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEE
T ss_pred             ecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeE
Confidence            345688999999999988 999999999999999975211   1122456778999999999999 77899999999999


Q ss_pred             EEEeeeCCCCC-ceeeEEEeccCcceEEEEECCCCC-eEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecC
Q psy11529         80 YVWTQNNDDKK-WKPTLVLLRINRAATCVKWSPLEN-KFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHP  157 (244)
Q Consensus        80 ~iwd~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p  157 (244)
                      ++||  ++++. ......+..|...+++++|+|++. +|++++.|+.|++||++....   .......|...|.+++|+|
T Consensus       257 ~i~d--~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~---~~~~~~~h~~~v~~i~~sp  331 (430)
T 2xyi_A          257 MIWD--TRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL---KLHSFESHKDEIFQVQWSP  331 (430)
T ss_dssp             EEEE--TTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS---CSEEEECCSSCEEEEEECS
T ss_pred             EEEE--CCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCC---CeEEeecCCCCEEEEEECC
Confidence            9999  55542 223444567889999999999987 688999999999999998543   2344556889999999999


Q ss_pred             CCC-EEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCC-EEEEeeCCCcEE
Q psy11529        158 NNH-LLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGN-KLCWTSHDGSIN  235 (244)
Q Consensus       158 ~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~  235 (244)
                      +++ +|++++.||.|++||++........    ........+.+..+.+|   ...|++++|+|+++ +|++++.||.|+
T Consensus       332 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~----~~~~~~~~~~~~~~~~h---~~~v~~~~~~p~~~~~l~s~s~dg~i~  404 (430)
T 2xyi_A          332 HNETILASSGTDRRLHVWDLSKIGEEQST----EDAEDGPPELLFIHGGH---TAKISDFSWNPNEPWIICSVSEDNIMQ  404 (430)
T ss_dssp             SCTTEEEEEETTSCCEEEEGGGTTCCCCH----HHHHHCCTTEEEECCCC---SSCEEEEEECSSSTTEEEEEETTSEEE
T ss_pred             CCCCEEEEEeCCCcEEEEeCCCCccccCc----cccccCCcceEEEcCCC---CCCceEEEECCCCCCEEEEEECCCCEE
Confidence            985 7999999999999999542111000    00000113667777788   88999999999999 899999999999


Q ss_pred             EEeCCC
Q psy11529        236 VRMSQQ  241 (244)
Q Consensus       236 vwd~~~  241 (244)
                      +|++.+
T Consensus       405 iw~~~~  410 (430)
T 2xyi_A          405 VWQMAE  410 (430)
T ss_dssp             EEEECH
T ss_pred             EeEccc
Confidence            999864

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=7.2e-35  Score=221.78  Aligned_cols=220  Identities=13%  Similarity=0.140  Sum_probs=176.1

Q ss_pred             CCCceEEEEEcCC----CCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCC-CCCeEEEEeCCccEEEE
Q psy11529          8 GINPVTTHAWNNT----RQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAP-NTNRIVTCSADRNAYVW   82 (244)
Q Consensus         8 ~~~~v~~~~~~~~----~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iw   82 (244)
                      +...|.+++|+|+    +++|++|+.||.|++||+.+  +  +.+..+.+|...|.+++|+| ++++|++++.|+.|++|
T Consensus        68 ~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~--~--~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iw  143 (366)
T 3k26_A           68 ADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPIT--M--QCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLW  143 (366)
T ss_dssp             TTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTT--C--CEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEE
T ss_pred             CCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchh--c--eEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEE
Confidence            4578999999999    67999999999999999987  4  67778889999999999999 99999999999999999


Q ss_pred             eeeCCCCCceeeEE-EeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceE-----------------------
Q psy11529         83 TQNNDDKKWKPTLV-LLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWV-----------------------  138 (244)
Q Consensus        83 d~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-----------------------  138 (244)
                      |  +.+++....+. ...|...+.+++|+|++++|++++.|+.|++||+++.+....                       
T Consensus       144 d--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (366)
T 3k26_A          144 N--IQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHF  221 (366)
T ss_dssp             E--TTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECC
T ss_pred             E--eecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeecc
Confidence            9  67765322221 046889999999999999999999999999999987543100                       


Q ss_pred             -EEeeecCCCCceeEEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEE
Q psy11529        139 -AKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVA  217 (244)
Q Consensus       139 -~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  217 (244)
                       .......|...|.+++|+  +++|++++.||.|++||++........    ..........+..+..|   ...|.+++
T Consensus       222 ~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~----~~~~~~~~~~~~~~~~~---~~~v~~~~  292 (366)
T 3k26_A          222 PDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDK----IKPSESNVTILGRFDYS---QCDIWYMR  292 (366)
T ss_dssp             CSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGG----CCTTCCCEEEEEEEECS---SCCSSCCC
T ss_pred             CccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccc----cccCCcchheecccccc---CCcEEEEE
Confidence             011223378899999999  779999999999999998643321110    00011223557778888   88999999


Q ss_pred             EecC--CCEEEEeeCCCcEEEEeCCCC
Q psy11529        218 FSKD--GNKLCWTSHDGSINVRMSQQV  242 (244)
Q Consensus       218 ~s~~--~~~l~~~~~dg~i~vwd~~~~  242 (244)
                      |+|+  +++|++++.||.|++||+++.
T Consensus       293 ~s~~~~~~~l~~~~~dg~i~vwd~~~~  319 (366)
T 3k26_A          293 FSMDFWQKMLALGNQVGKLYVWDLEVE  319 (366)
T ss_dssp             CEECTTSSEEEEECTTSCEEEEECCSS
T ss_pred             EcCCCCCcEEEEEecCCcEEEEECCCC
Confidence            9999  999999999999999999864

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.3e-34  Score=224.10  Aligned_cols=208  Identities=13%  Similarity=0.246  Sum_probs=173.3

Q ss_pred             CCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCC-CCeEEEEeCCccEEEEeeeC
Q psy11529          8 GINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPN-TNRIVTCSADRNAYVWTQNN   86 (244)
Q Consensus         8 ~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~   86 (244)
                      +...|.+++|+|++++|++++.|+.|++|++............+.+|...|.+++|+|+ +++|++++.|+.|++||  +
T Consensus        66 ~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd--~  143 (416)
T 2pm9_A           66 VDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWD--M  143 (416)
T ss_dssp             CSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCB--T
T ss_pred             cCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEE--C
Confidence            47899999999999999999999999999997521112477788899999999999998 89999999999999999  6


Q ss_pred             CCCC------cee-eEEEeccCcceEEEEECCC-CCeEEEeeCCCeEEEEEeecCCCceEEEeeecCC------CCceeE
Q psy11529         87 DDKK------WKP-TLVLLRINRAATCVKWSPL-ENKFAAGSGARLISVCYFESENDWWVAKHIKKPI------KSTITC  152 (244)
Q Consensus        87 ~~~~------~~~-~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~------~~~v~~  152 (244)
                      .+++      ... ......|...+.+++|+|+ +.+|++++.|+.|++||++..+.    ......+      ...+.+
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~----~~~~~~~~~~~~~~~~v~~  219 (416)
T 2pm9_A          144 NKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKE----VIHLSYTSPNSGIKQQLSV  219 (416)
T ss_dssp             TTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEE----EEEECCCCCSSCCCCCEEE
T ss_pred             CCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCc----ceEEeccccccccCCceEE
Confidence            6554      111 1122467889999999999 78999999999999999988764    2223332      688999


Q ss_pred             EEecCCC-CEEEEeeCCC---eEEEEEeeecccccCCCCCCCCcccccc-ceeEEec-CCCCCCCCeEEEEEec-CCCEE
Q psy11529        153 LDWHPNN-HLLGCGSTDF---KVRVFSAYIKDIESAPQSTNWGSKSTLG-NCLVELN-NSSSGGGWIHSVAFSK-DGNKL  225 (244)
Q Consensus       153 ~~~~p~~-~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~v~~~~~s~-~~~~l  225 (244)
                      ++|+|++ .++++++.|+   .|++||++                  .+ ..+..+. +|   ...|.+++|+| ++++|
T Consensus       220 ~~~~~~~~~~l~~~~~d~~~~~i~~~d~~------------------~~~~~~~~~~~~~---~~~v~~~~~s~~~~~~l  278 (416)
T 2pm9_A          220 VEWHPKNSTRVATATGSDNDPSILIWDLR------------------NANTPLQTLNQGH---QKGILSLDWCHQDEHLL  278 (416)
T ss_dssp             EEECSSCTTEEEEEECCSSSCCCCEEETT------------------STTSCSBCCCSCC---SSCEEEEEECSSCSSCE
T ss_pred             EEECCCCCCEEEEEECCCCCceEEEEeCC------------------CCCCCcEEeecCc---cCceeEEEeCCCCCCeE
Confidence            9999997 6899999998   99999984                  32 4556666 77   88999999999 99999


Q ss_pred             EEeeCCCcEEEEeCCCC
Q psy11529        226 CWTSHDGSINVRMSQQV  242 (244)
Q Consensus       226 ~~~~~dg~i~vwd~~~~  242 (244)
                      ++++.||.|++||+++.
T Consensus       279 ~s~~~dg~v~~wd~~~~  295 (416)
T 2pm9_A          279 LSSGRDNTVLLWNPESA  295 (416)
T ss_dssp             EEEESSSEEEEECSSSC
T ss_pred             EEEeCCCCEEEeeCCCC
Confidence            99999999999999864

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=2.3e-33  Score=216.44  Aligned_cols=223  Identities=17%  Similarity=0.255  Sum_probs=171.8

Q ss_pred             eEEeCCCceEEEEEcC-CCCeEEEecCCCeEEEeeeccCCCcceeeeee-----------ccCCCceEEEEeCC-CCCeE
Q psy11529          4 VYSFGINPVTTHAWNN-TRQQLAFTPNNQEVHLYQYEKAANDWSQLDVL-----------DGHDLKVTGIDWAP-NTNRI   70 (244)
Q Consensus         4 ~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~-----------~~~~~~v~~~~~~~-~~~~l   70 (244)
                      +...|.++|++++|+| ++++|++|+.||.|++|++..  +........           .+|...|.+++|+| ++.+|
T Consensus        38 ~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  115 (408)
T 4a11_B           38 VERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLEN--SSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMF  115 (408)
T ss_dssp             ECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCC--CSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCE
T ss_pred             eeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCC--CcccceEeccccccccccccccCCCcEEEEEEccCCCcEE
Confidence            4455799999999999 999999999999999999976  311111111           35999999999999 78899


Q ss_pred             EEEeCCccEEEEeeeCCCCCceeeEEEeccCcceEEEEECCC---CCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCC
Q psy11529         71 VTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPL---ENKFAAGSGARLISVCYFESENDWWVAKHIKKPIK  147 (244)
Q Consensus        71 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~  147 (244)
                      ++++.|+.|++||  +.+++....   ..+...+.++.|+|.   +.++++++.++.|++||+++.+.    ......|.
T Consensus       116 ~s~~~d~~i~iwd--~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~----~~~~~~~~  186 (408)
T 4a11_B          116 TSSSFDKTLKVWD--TNTLQTADV---FNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSC----SHILQGHR  186 (408)
T ss_dssp             EEEETTSEEEEEE--TTTTEEEEE---EECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCC----CEEECCCC
T ss_pred             EEEeCCCeEEEee--CCCCcccee---ccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcce----eeeecCCC
Confidence            9999999999999  777664333   346788999999985   45899999999999999998865    34556788


Q ss_pred             CceeEEEecCCCC-EEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEE
Q psy11529        148 STITCLDWHPNNH-LLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLC  226 (244)
Q Consensus       148 ~~v~~~~~~p~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  226 (244)
                      ..|.+++|+|+++ ++++++.||.|++||++.............+  ............|   ...|.+++|+|++++|+
T Consensus       187 ~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~  261 (408)
T 4a11_B          187 QEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNG--KKSQAVESANTAH---NGKVNGLCFTSDGLHLL  261 (408)
T ss_dssp             SCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTT--CSCCCTTTSSCSC---SSCEEEEEECTTSSEEE
T ss_pred             CcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCccccccccccc--ccceeeccccccc---cCceeEEEEcCCCCEEE
Confidence            9999999999998 5899999999999999643211000000000  0011111222455   88999999999999999


Q ss_pred             EeeCCCcEEEEeCCCC
Q psy11529        227 WTSHDGSINVRMSQQV  242 (244)
Q Consensus       227 ~~~~dg~i~vwd~~~~  242 (244)
                      +++.||.|++||+++.
T Consensus       262 ~~~~dg~i~vwd~~~~  277 (408)
T 4a11_B          262 TVGTDNRMRLWNSSNG  277 (408)
T ss_dssp             EEETTSCEEEEETTTC
T ss_pred             EecCCCeEEEEECCCC
Confidence            9999999999999864

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.9e-33  Score=214.09  Aligned_cols=223  Identities=12%  Similarity=0.121  Sum_probs=177.4

Q ss_pred             EeCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCC-----ccEE
Q psy11529          6 SFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSAD-----RNAY   80 (244)
Q Consensus         6 ~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~   80 (244)
                      ..|.+.|.+++|+|++++|++++.|+.|++||+.+  +  +....+. +...|.+++|+|+++++++++.+     +.|.
T Consensus        71 ~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~--~--~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~  145 (369)
T 3zwl_B           71 DGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSN--G--QCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSIN  145 (369)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTT--C--CEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEE
T ss_pred             hhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC--C--cEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEE
Confidence            34689999999999999999999999999999987  4  5566666 88999999999999999999988     9999


Q ss_pred             EEeeeCCCCCce---------eeEEEeccCc--ceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCc
Q psy11529         81 VWTQNNDDKKWK---------PTLVLLRINR--AATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKST  149 (244)
Q Consensus        81 iwd~~~~~~~~~---------~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~  149 (244)
                      +||+  ......         .......+..  .+.+++|+|++++|++++.|+.|++||++....   .......|...
T Consensus       146 ~~d~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~~  220 (369)
T 3zwl_B          146 IYEI--ERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYE---YVDSIDLHEKS  220 (369)
T ss_dssp             EEEE--EECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTE---EEEEEECCSSC
T ss_pred             EEEe--cCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcE---eEEEEecCCCc
Confidence            9995  333221         1222334444  899999999999999999999999999988432   34555667889


Q ss_pred             eeEEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCC-------------CC--C----------------------Cc
Q psy11529        150 ITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQS-------------TN--W----------------------GS  192 (244)
Q Consensus       150 v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-------------~~--~----------------------~~  192 (244)
                      +.+++|+|++++|++++.||.|++||++..........             ..  .                      .-
T Consensus       221 v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~  300 (369)
T 3zwl_B          221 ISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFY  300 (369)
T ss_dssp             EEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECCC-------------CEEEEE
T ss_pred             eeEEEECCCCCEEEEecCCceEEEEECCCCceeeeecCCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEE
Confidence            99999999999999999999999999865432211000             00  0                      00


Q ss_pred             cccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCC
Q psy11529        193 KSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQ  241 (244)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~  241 (244)
                      ....++.+..+.+|   ...|.+++|+|++++|++++.||.|++|++++
T Consensus       301 d~~~~~~~~~~~~~---~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~  346 (369)
T 3zwl_B          301 HKIFEEEIGRVQGH---FGPLNTVAISPQGTSYASGGEDGFIRLHHFEK  346 (369)
T ss_dssp             ETTTCCEEEEEECC---SSCEEEEEECTTSSEEEEEETTSEEEEEEECH
T ss_pred             ecCCCcchhheecc---cCcEEEEEECCCCCEEEEEcCCCeEEEEECcc
Confidence            11234556677778   89999999999999999999999999999874

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.8e-34  Score=223.91  Aligned_cols=210  Identities=12%  Similarity=0.072  Sum_probs=166.2

Q ss_pred             eCCCceEEEEEcC-CCCeEEEecCCCeEEEeeeccCC--CcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEe
Q psy11529          7 FGINPVTTHAWNN-TRQQLAFTPNNQEVHLYQYEKAA--NDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWT   83 (244)
Q Consensus         7 ~~~~~v~~~~~~~-~~~~l~~~~~d~~v~v~~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd   83 (244)
                      .|.++|++++|+| ++++|++|+.||.|+|||+....  ...+....+ .|...|.+++|+|++++|++++.|+.|++||
T Consensus        61 ~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd  139 (437)
T 3gre_A           61 NEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFDAFAVSSKDGQIIVLK  139 (437)
T ss_dssp             TTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             CCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEE
Confidence            3689999999999 99999999999999999985410  111223333 4999999999999999999999999999999


Q ss_pred             eeC-CCCCceeeEE--------Eec--cCcceEEEE--ECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecC--CCC
Q psy11529         84 QNN-DDKKWKPTLV--------LLR--INRAATCVK--WSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKP--IKS  148 (244)
Q Consensus        84 ~~~-~~~~~~~~~~--------~~~--~~~~v~~~~--~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~--~~~  148 (244)
                      +.. ..++......        +..  +...+.++.  +++++.+|++++.|+.|++||+++.+.    ......  |..
T Consensus       140 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~----~~~~~~~~h~~  215 (437)
T 3gre_A          140 VNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLER----LQIIENSPRHG  215 (437)
T ss_dssp             EEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCE----EEEEECCGGGC
T ss_pred             eccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCee----eEEEccCCCCC
Confidence            421 1333222111        111  445566666  668899999999999999999998765    223333  778


Q ss_pred             ceeEEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEec-CCCCCCCCeEEEEEec----CCC
Q psy11529        149 TITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELN-NSSSGGGWIHSVAFSK----DGN  223 (244)
Q Consensus       149 ~v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~s~----~~~  223 (244)
                      .|++++|+|++++|++|+.||.|++||+                  ..++++..+. .|   ...|.+++|+|    ++.
T Consensus       216 ~v~~~~~s~~~~~l~s~~~dg~i~iwd~------------------~~~~~~~~~~~~~---~~~v~~~~~~~~~s~~~~  274 (437)
T 3gre_A          216 AVSSICIDEECCVLILGTTRGIIDIWDI------------------RFNVLIRSWSFGD---HAPITHVEVCQFYGKNSV  274 (437)
T ss_dssp             CEEEEEECTTSCEEEEEETTSCEEEEET------------------TTTEEEEEEBCTT---CEEEEEEEECTTTCTTEE
T ss_pred             ceEEEEECCCCCEEEEEcCCCeEEEEEc------------------CCccEEEEEecCC---CCceEEEEeccccCCCcc
Confidence            9999999999999999999999999999                  5677888776 55   77899996664    688


Q ss_pred             EEEEeeCCCcEEEEeCCCC
Q psy11529        224 KLCWTSHDGSINVRMSQQV  242 (244)
Q Consensus       224 ~l~~~~~dg~i~vwd~~~~  242 (244)
                      +|++++.||.|++||+++.
T Consensus       275 ~l~s~~~dg~i~iwd~~~~  293 (437)
T 3gre_A          275 IVVGGSSKTFLTIWNFVKG  293 (437)
T ss_dssp             EEEEESTTEEEEEEETTTT
T ss_pred             EEEEEcCCCcEEEEEcCCC
Confidence            9999999999999999753

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.6e-33  Score=218.28  Aligned_cols=221  Identities=12%  Similarity=0.110  Sum_probs=174.3

Q ss_pred             EeCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcc----------------------------------------
Q psy11529          6 SFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDW----------------------------------------   45 (244)
Q Consensus         6 ~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~----------------------------------------   45 (244)
                      ..|..+|.+++|+|++++|++++.|+.|++|++..  +..                                        
T Consensus       146 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (425)
T 1r5m_A          146 NFHRAPIVSVKWNKDGTHIISMDVENVTILWNVIS--GTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIP  223 (425)
T ss_dssp             CCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTT--TEEEEEECCC---------------CCCBSCCEEEETTEEEEE
T ss_pred             cCCCccEEEEEECCCCCEEEEEecCCeEEEEECCC--CcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEE
Confidence            34688999999999999999999999999999864  210                                        


Q ss_pred             --------------eeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCCCCCceeeEEEeccCcceEEEEECC
Q psy11529         46 --------------SQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSP  111 (244)
Q Consensus        46 --------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~  111 (244)
                                    +....+..|...|.+++|+|++++|++++.|+.|++||  +.+++.  ...+..|...+.+++|+|
T Consensus       224 ~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~--~~~~~~~~~~i~~~~~~~  299 (425)
T 1r5m_A          224 GPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWH--GGNGNS--QNCFYGHSQSIVSASWVG  299 (425)
T ss_dssp             CGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEC--SSSBSC--SEEECCCSSCEEEEEEET
T ss_pred             cCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEE--CCCCcc--ceEecCCCccEEEEEECC
Confidence                          11234557889999999999999999999999999999  666654  334456889999999999


Q ss_pred             CCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCC--
Q psy11529        112 LENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTN--  189 (244)
Q Consensus       112 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--  189 (244)
                      ++ .+++++.|+.|++||+++.+.    ......+...+.+++|+|++++|++++.||.|++||++............  
T Consensus       300 ~~-~l~~~~~d~~i~i~d~~~~~~----~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~  374 (425)
T 1r5m_A          300 DD-KVISCSMDGSVRLWSLKQNTL----LALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRD  374 (425)
T ss_dssp             TT-EEEEEETTSEEEEEETTTTEE----EEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC----------
T ss_pred             CC-EEEEEeCCCcEEEEECCCCcE----eEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccc
Confidence            99 999999999999999988754    44455677899999999999999999999999999995433110000000  


Q ss_pred             CCccccccceeEEecCCCCCCC--CeEEEEEecCCCEEEEeeCCCcEEEEeCC
Q psy11529        190 WGSKSTLGNCLVELNNSSSGGG--WIHSVAFSKDGNKLCWTSHDGSINVRMSQ  240 (244)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~~~~~dg~i~vwd~~  240 (244)
                      ........+.+..+..|   ..  .|.+++|+|++++|++++.||.|++||++
T Consensus       375 ~~~~~~~~~~~~~~~~~---~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~  424 (425)
T 1r5m_A          375 GILNPLPIPLYASYQSS---QDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIP  424 (425)
T ss_dssp             ----CEECCEEEEECCT---TCCCCEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred             cccCcccchhhhhhcCc---ccCCceEEEEccCCCceEEEEecCceEEEEeec
Confidence            00000112367788887   55  99999999999999999999999999986

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.8e-33  Score=220.15  Aligned_cols=203  Identities=10%  Similarity=0.031  Sum_probs=167.7

Q ss_pred             CCceEEEEEcCCCCeE-EEecCCCeEEEeeec--cCCCcceeeeeec--cCCCceEEEEeCCCCCeEEEEeCCccEEEEe
Q psy11529          9 INPVTTHAWNNTRQQL-AFTPNNQEVHLYQYE--KAANDWSQLDVLD--GHDLKVTGIDWAPNTNRIVTCSADRNAYVWT   83 (244)
Q Consensus         9 ~~~v~~~~~~~~~~~l-~~~~~d~~v~v~~~~--~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd   83 (244)
                      .+.|.+++|+|++++| ++++.|+.|+||++.  .  +  .....+.  .|...|.+++|+|++++|++++.++.+++|+
T Consensus       102 ~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~--~--~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~  177 (450)
T 2vdu_B          102 YSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTS--K--NVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSID  177 (450)
T ss_dssp             CCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSS--S--SCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             CCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCC--C--ceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEe
Confidence            4579999999999996 889999999999998  5  4  4455554  5788999999999999999999999999999


Q ss_pred             eeCCCCCce--eeEEEeccCcceEEEEECCC---CCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCC
Q psy11529         84 QNNDDKKWK--PTLVLLRINRAATCVKWSPL---ENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPN  158 (244)
Q Consensus        84 ~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~  158 (244)
                        +.++...  ....+.+|...|.+++|+|+   +++|++++.|+.|++||++++..   ......+|...|.+++|+ +
T Consensus       178 --~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~---~~~~~~~h~~~v~~~~~s-d  251 (450)
T 2vdu_B          178 --INSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFI---VDKWLFGHKHFVSSICCG-K  251 (450)
T ss_dssp             --TTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTC---EEEECCCCSSCEEEEEEC-S
T ss_pred             --cCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCce---eeeeecCCCCceEEEEEC-C
Confidence              6665433  12234568899999999999   99999999999999999998875   333456788999999999 9


Q ss_pred             CCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCC----------------------CCCCCeEEE
Q psy11529        159 NHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSS----------------------SGGGWIHSV  216 (244)
Q Consensus       159 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~v~~~  216 (244)
                      +++|++++.|+.|++||++                  +++.+..+..++                      .....+.++
T Consensus       252 ~~~l~s~~~d~~v~vwd~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i  313 (450)
T 2vdu_B          252 DYLLLSAGGDDKIFAWDWK------------------TGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKI  313 (450)
T ss_dssp             TTEEEEEESSSEEEEEETT------------------TCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEE
T ss_pred             CCEEEEEeCCCeEEEEECC------------------CCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEE
Confidence            9999999999999999994                  444444443110                      004679999


Q ss_pred             EEecCCCEEEEee-CCCcEEEEeC
Q psy11529        217 AFSKDGNKLCWTS-HDGSINVRMS  239 (244)
Q Consensus       217 ~~s~~~~~l~~~~-~dg~i~vwd~  239 (244)
                      +|+|++++|++++ .|+.|++|++
T Consensus       314 ~~~~~~~~l~~~~~~d~~i~iw~~  337 (450)
T 2vdu_B          314 IKSKNLPFVAFFVEATKCIIILEM  337 (450)
T ss_dssp             EECSSSSEEEEEETTCSEEEEEEE
T ss_pred             EEeCCCCEEEEEECCCCeEEEEEe
Confidence            9999999999998 8999999999

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=1.1e-32  Score=212.66  Aligned_cols=224  Identities=12%  Similarity=0.113  Sum_probs=177.3

Q ss_pred             CCCceEEEEEcC-CCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCC---CCeEEEEeCCccEEEEe
Q psy11529          8 GINPVTTHAWNN-TRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPN---TNRIVTCSADRNAYVWT   83 (244)
Q Consensus         8 ~~~~v~~~~~~~-~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~d~~i~iwd   83 (244)
                      |..+|.+++|+| ++++|++++.|+.|++|++..  +  +....+. +...+.++.|+|.   +.++++++.|+.|++||
T Consensus        98 ~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~--~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d  172 (408)
T 4a11_B           98 HRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNT--L--QTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCD  172 (408)
T ss_dssp             CSSCEEEEEECTTCTTCEEEEETTSEEEEEETTT--T--EEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEE
T ss_pred             CCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCC--C--ccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEe
Confidence            789999999999 778999999999999999987  4  5555555 7888999999984   45999999999999999


Q ss_pred             eeCCCCCceeeEEEeccCcceEEEEECCCCCe-EEEeeCCCeEEEEEeecCCCceEE------------EeeecCCCCce
Q psy11529         84 QNNDDKKWKPTLVLLRINRAATCVKWSPLENK-FAAGSGARLISVCYFESENDWWVA------------KHIKKPIKSTI  150 (244)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~------------~~~~~~~~~~v  150 (244)
                        +.+++.  ...+..|...+.+++|+|++++ +++++.|+.|++||++........            ......|...|
T Consensus       173 --~~~~~~--~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  248 (408)
T 4a11_B          173 --LKSGSC--SHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKV  248 (408)
T ss_dssp             --SSSSCC--CEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCE
T ss_pred             --CCCcce--eeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCce
Confidence              666654  3445678899999999999884 889999999999999876531000            11114577899


Q ss_pred             eEEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCC-------CCc----------------------cccccceeE
Q psy11529        151 TCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTN-------WGS----------------------KSTLGNCLV  201 (244)
Q Consensus       151 ~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-------~~~----------------------~~~~~~~~~  201 (244)
                      .+++|+|++++|++++.||.|++||++............       ...                      ....++.+.
T Consensus       249 ~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~  328 (408)
T 4a11_B          249 NGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQIT  328 (408)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEE
T ss_pred             eEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCccee
Confidence            999999999999999999999999997544321110000       000                      124567778


Q ss_pred             EecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCCCC
Q psy11529        202 ELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQVL  243 (244)
Q Consensus       202 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~  243 (244)
                      .+.+|   ...|.+++|+|++++|++++.||.|++||+++..
T Consensus       329 ~~~~~---~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~  367 (408)
T 4a11_B          329 MLKGH---YKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYE  367 (408)
T ss_dssp             EECCC---SSCEEEEEEETTTTEEEEEETTSCEEEEEECC--
T ss_pred             eeccC---CCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCC
Confidence            88888   8999999999999999999999999999998753

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=1.5e-33  Score=235.06  Aligned_cols=207  Identities=14%  Similarity=0.259  Sum_probs=182.0

Q ss_pred             EEeCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEee
Q psy11529          5 YSFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQ   84 (244)
Q Consensus         5 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~   84 (244)
                      +..|.++|.+++|+|++++|++++.||.|++|++.+  +  +....+.+|...|.+++|+|++++|++++.|+.|++|| 
T Consensus        51 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~--~--~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~-  125 (814)
T 3mkq_A           51 IQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNT--G--EKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWN-  125 (814)
T ss_dssp             EECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTT--C--CEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEE-
T ss_pred             EecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCC--C--cEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEE-
Confidence            345789999999999999999999999999999977  5  67788899999999999999999999999999999999 


Q ss_pred             eCCCCCceeeEEEeccCcceEEEEECC-CCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecC--CCCE
Q psy11529         85 NNDDKKWKPTLVLLRINRAATCVKWSP-LENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHP--NNHL  161 (244)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p--~~~~  161 (244)
                       +.++. .....+..|...+.+++|+| +++.|++++.|+.|++||++....   .......+...+..++|+|  ++++
T Consensus       126 -~~~~~-~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~  200 (814)
T 3mkq_A          126 -WENNW-ALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTP---NFTLTTGQERGVNYVDYYPLPDKPY  200 (814)
T ss_dssp             -GGGTS-EEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSC---SEEEECCCTTCCCEEEECCSTTCCE
T ss_pred             -CCCCc-eEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcc---eeEEecCCCCCEEEEEEEECCCCCE
Confidence             55552 22344567889999999999 789999999999999999987765   2333344558899999999  9999


Q ss_pred             EEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCC
Q psy11529        162 LGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQ  241 (244)
Q Consensus       162 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~  241 (244)
                      |++++.||.|++||+                  ..++.+..+..|   ...|.+++|+|++++|++++.||.|++||+.+
T Consensus       201 l~~~~~dg~i~~~d~------------------~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~  259 (814)
T 3mkq_A          201 MITASDDLTIKIWDY------------------QTKSCVATLEGH---MSNVSFAVFHPTLPIIISGSEDGTLKIWNSST  259 (814)
T ss_dssp             EEEECTTSEEEEEET------------------TTTEEEEEEECC---SSCEEEEEECSSSSEEEEEETTSCEEEEETTT
T ss_pred             EEEEeCCCEEEEEEC------------------CCCcEEEEEcCC---CCCEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Confidence            999999999999998                  667788888888   89999999999999999999999999999976


Q ss_pred             C
Q psy11529        242 V  242 (244)
Q Consensus       242 ~  242 (244)
                      .
T Consensus       260 ~  260 (814)
T 3mkq_A          260 Y  260 (814)
T ss_dssp             C
T ss_pred             C
Confidence            3

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=5.2e-33  Score=209.67  Aligned_cols=222  Identities=16%  Similarity=0.132  Sum_probs=174.3

Q ss_pred             EeCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeee
Q psy11529          6 SFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQN   85 (244)
Q Consensus         6 ~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~   85 (244)
                      ..|...|.+++|+|++++|++++.|+.|++|+...  .  ........+...+..+.+++++.+|++++.|+.+++||  
T Consensus        83 ~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d--  156 (340)
T 4aow_A           83 RGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTT--G--TTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWN--  156 (340)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT--T--EEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC--
T ss_pred             eCCCCCEEEEEECCCCCEEEEEcccccceEEeecc--c--ceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEE--
Confidence            34688999999999999999999999999999977  4  56666677888999999999999999999999999999  


Q ss_pred             CCCCCceeeEEEeccCcceEEEEECCCC--CeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEE
Q psy11529         86 NDDKKWKPTLVLLRINRAATCVKWSPLE--NKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLG  163 (244)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~  163 (244)
                      ..... ........|...+..++|++++  .++++++.|+.|++||++..+.    ......|...|++++|+|++++|+
T Consensus       157 ~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~----~~~~~~h~~~v~~~~~s~~~~~l~  231 (340)
T 4aow_A          157 TLGVC-KYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKL----KTNHIGHTGYLNTVTVSPDGSLCA  231 (340)
T ss_dssp             TTSCE-EEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEE----EEEECCCSSCEEEEEECTTSSEEE
T ss_pred             eCCCc-eEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCce----eeEecCCCCcEEEEEECCCCCEEE
Confidence            54433 2334445678899999998874  5688999999999999988754    556677889999999999999999


Q ss_pred             EeeCCCeEEEEEeeecccccC-------------CCCCCC-Cc--------cccccceeEEe---------cCCCCCCCC
Q psy11529        164 CGSTDFKVRVFSAYIKDIESA-------------PQSTNW-GS--------KSTLGNCLVEL---------NNSSSGGGW  212 (244)
Q Consensus       164 ~~~~dg~i~i~d~~~~~~~~~-------------~~~~~~-~~--------~~~~~~~~~~~---------~~~~~~~~~  212 (244)
                      +|+.||.|++||++.......             +..... ..        .......+..+         ..|   ...
T Consensus       232 s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h---~~~  308 (340)
T 4aow_A          232 SGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAE---PPQ  308 (340)
T ss_dssp             EEETTCEEEEEETTTTEEEEEEECSSCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCC-------CC---CCC
T ss_pred             EEeCCCeEEEEEeccCceeeeecCCceEEeeecCCCCceeeccCCCEEEEEECCCCeEEEeccccceeeeccCC---CCC
Confidence            999999999999864432211             000000 00        01112222222         244   788


Q ss_pred             eEEEEEecCCCEEEEeeCCCcEEEEeCCC
Q psy11529        213 IHSVAFSKDGNKLCWTSHDGSINVRMSQQ  241 (244)
Q Consensus       213 v~~~~~s~~~~~l~~~~~dg~i~vwd~~~  241 (244)
                      |++++|+|||++|++|+.||.|+|||+++
T Consensus       309 v~~l~~s~dg~~l~sgs~Dg~v~iW~~~t  337 (340)
T 4aow_A          309 CTSLAWSADGQTLFAGYTDNLVRVWQVTI  337 (340)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEEEEC
T ss_pred             EEEEEECCCCCEEEEEeCCCEEEEEeCCC
Confidence            99999999999999999999999999875

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=100.00  E-value=4.1e-34  Score=210.40  Aligned_cols=203  Identities=14%  Similarity=0.074  Sum_probs=148.5

Q ss_pred             CCCceEEEEEcCC----CCeEEEecC--------------------CCeEEEeeeccCCCcceeeeeeccCCCceEEEEe
Q psy11529          8 GINPVTTHAWNNT----RQQLAFTPN--------------------NQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDW   63 (244)
Q Consensus         8 ~~~~v~~~~~~~~----~~~l~~~~~--------------------d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~   63 (244)
                      +.+.|.+++++||    ++.+++++.                    |+.|++|++... +  +.+..+.+|...+..++|
T Consensus       110 ~~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~d-G--~~~~s~~~~~~~v~~l~f  186 (356)
T 2w18_A          110 EIREIRALFCSSDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAED-G--GGKENQFLMPPEETILTF  186 (356)
T ss_dssp             SEEEEEEECC------CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTT-S--CEEEEEEECCCSSCEEEE
T ss_pred             cccceEEEEECCCccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCC-C--ceeeeeccCCCceeeEEe
Confidence            3457888899998    777776542                    788888888432 2  566677778888888888


Q ss_pred             CC---CCCeEEEEeCCccEEEEeeeCCCCCceeeEEEecc---CcceEEEEECCCCCeE------------EEeeCCCeE
Q psy11529         64 AP---NTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRI---NRAATCVKWSPLENKF------------AAGSGARLI  125 (244)
Q Consensus        64 ~~---~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~l------------~~~~~d~~i  125 (244)
                      +|   ++.+|++++.|++|+|||  +.+++....+.  ++   ...+.+++|+|+|.++            ++|+.|+++
T Consensus       187 s~~~g~~~~LaSgS~D~TIkIWD--l~TGk~l~tL~--g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tI  262 (356)
T 2w18_A          187 AEVQGMQEALLGTTIMNNIVIWN--LKTGQLLKKMH--IDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQL  262 (356)
T ss_dssp             EEEETSTTEEEEEETTSEEEEEE--TTTCCEEEEEE--CCC---CCCEEEEEEETTEEEEEEC------------CCEEE
T ss_pred             eccCCCCceEEEecCCCcEEEEE--CCCCcEEEEEc--CCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEE
Confidence            88   678999999999999999  88888655543  33   3467788999999876            567789999


Q ss_pred             EEEEeecCCCceEEEee-ecCCCCceeEEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEec
Q psy11529        126 SVCYFESENDWWVAKHI-KKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELN  204 (244)
Q Consensus       126 ~i~d~~~~~~~~~~~~~-~~~~~~~v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (244)
                      ++||..++......... ..+|...+.+.++  ++.++++++.|++|+|||+                  .+++++.++.
T Consensus       263 klWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~--sg~~lASgS~DgTIkIWDl------------------~tGk~l~tL~  322 (356)
T 2w18_A          263 IVINPKTTLSVGVMLYCLPPGQAGRFLEGDV--KDHCAAAILTSGTIAIWDL------------------LLGQCTALLP  322 (356)
T ss_dssp             EEEETTTTEEEEEEEECCCTTCCCCEEEEEE--ETTEEEEEETTSCEEEEET------------------TTCSEEEEEC
T ss_pred             EEEECCCCEEEEEEEeeccCCCcceeEcccc--CCCEEEEEcCCCcEEEEEC------------------CCCcEEEEec
Confidence            99999877542111111 1344444444444  3789999999999999999                  7899999999


Q ss_pred             CCCCCCCC-eEEEEEecCCCEEEEeeCCCcEEEEeCC
Q psy11529        205 NSSSGGGW-IHSVAFSKDGNKLCWTSHDGSINVRMSQ  240 (244)
Q Consensus       205 ~~~~~~~~-v~~~~~s~~~~~l~~~~~dg~i~vwd~~  240 (244)
                      +|   ... +..++|+|||++|++|+.|++|+|||+.
T Consensus       323 gH---~~~vvs~vafSPDG~~LaSGS~D~TIklWd~~  356 (356)
T 2w18_A          323 PV---SDQHWSFVKWSGTDSHLLAGQKDGNIFVYHYS  356 (356)
T ss_dssp             CC-----CCCCEEEECSSSSEEEEECTTSCEEEEEEC
T ss_pred             CC---CCCeEEEEEECCCCCEEEEEECCCcEEEecCC
Confidence            88   554 4568999999999999999999999963

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=1.2e-33  Score=220.07  Aligned_cols=212  Identities=18%  Similarity=0.274  Sum_probs=174.9

Q ss_pred             eCCCceEEEEEcCC-CCeEEEecCCCeEEEeeeccC------CCcceeeeeeccCCCceEEEEeCCCCC-eEEEEeCCcc
Q psy11529          7 FGINPVTTHAWNNT-RQQLAFTPNNQEVHLYQYEKA------ANDWSQLDVLDGHDLKVTGIDWAPNTN-RIVTCSADRN   78 (244)
Q Consensus         7 ~~~~~v~~~~~~~~-~~~l~~~~~d~~v~v~~~~~~------~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~   78 (244)
                      .|.+.|++++|+|+ +++|++++.+|.|++|++...      .+.......+.+|...|.+++|+|++. +|++++.||.
T Consensus       126 ~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~  205 (430)
T 2xyi_A          126 NHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHT  205 (430)
T ss_dssp             EESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSC
T ss_pred             cCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCe
Confidence            45889999999997 679999999999999999641      011366778889999999999999888 9999999999


Q ss_pred             EEEEeeeCCCCCc-----eeeEEEeccCcceEEEEECC-CCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeE
Q psy11529         79 AYVWTQNNDDKKW-----KPTLVLLRINRAATCVKWSP-LENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITC  152 (244)
Q Consensus        79 i~iwd~~~~~~~~-----~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~  152 (244)
                      |++||  +..+..     ........|...|.+++|+| ++.+|++++.|+.|++||++...... .......|...|++
T Consensus       206 i~vwd--~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~-~~~~~~~~~~~v~~  282 (430)
T 2xyi_A          206 ICLWD--INATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSK-PSHTVDAHTAEVNC  282 (430)
T ss_dssp             EEEEE--TTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSS-CSEEEECCSSCEEE
T ss_pred             EEEEe--CCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCc-ceeEeecCCCCeEE
Confidence            99999  555321     11334457889999999999 67889999999999999999773100 12334577889999


Q ss_pred             EEecCCCC-EEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCC-EEEEeeC
Q psy11529        153 LDWHPNNH-LLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGN-KLCWTSH  230 (244)
Q Consensus       153 ~~~~p~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~  230 (244)
                      ++|+|++. +|++|+.||.|++||++                 .....+..+..|   ...|.+++|+|+++ +|++++.
T Consensus       283 i~~~p~~~~~l~tg~~dg~v~vwd~~-----------------~~~~~~~~~~~h---~~~v~~i~~sp~~~~~l~s~~~  342 (430)
T 2xyi_A          283 LSFNPYSEFILATGSADKTVALWDLR-----------------NLKLKLHSFESH---KDEIFQVQWSPHNETILASSGT  342 (430)
T ss_dssp             EEECSSCTTEEEEEETTSEEEEEETT-----------------CTTSCSEEEECC---SSCEEEEEECSSCTTEEEEEET
T ss_pred             EEeCCCCCCEEEEEeCCCeEEEEeCC-----------------CCCCCeEEeecC---CCCEEEEEECCCCCCEEEEEeC
Confidence            99999987 78899999999999994                 224567788888   89999999999985 6899999


Q ss_pred             CCcEEEEeCCC
Q psy11529        231 DGSINVRMSQQ  241 (244)
Q Consensus       231 dg~i~vwd~~~  241 (244)
                      ||.|++||++.
T Consensus       343 d~~i~iwd~~~  353 (430)
T 2xyi_A          343 DRRLHVWDLSK  353 (430)
T ss_dssp             TSCCEEEEGGG
T ss_pred             CCcEEEEeCCC
Confidence            99999999976

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=5.9e-34  Score=216.15  Aligned_cols=208  Identities=17%  Similarity=0.187  Sum_probs=167.2

Q ss_pred             eCCCceEEEEEcCC---CCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEE------eCCCCCeEEEEeCCc
Q psy11529          7 FGINPVTTHAWNNT---RQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGID------WAPNTNRIVTCSADR   77 (244)
Q Consensus         7 ~~~~~v~~~~~~~~---~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~------~~~~~~~l~~~~~d~   77 (244)
                      .|..+|.+++|+|+   +++|++++.|+.|++|++..  +. .....+.+|...|.+++      |+|++++|++++.|+
T Consensus        63 ~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~--~~-~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~  139 (357)
T 3i2n_A           63 EKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEA--PE-MPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDG  139 (357)
T ss_dssp             EESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTS--CS-SCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTS
T ss_pred             cccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCC--CC-ccEEEEEecccceEEEeeccccccCCCccEEEEEeCCC
Confidence            35789999999998   69999999999999999987  31 26778889999999995      578999999999999


Q ss_pred             cEEEEeeeCCCCCceeeEEEecc----CcceEEEE----ECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCc
Q psy11529         78 NAYVWTQNNDDKKWKPTLVLLRI----NRAATCVK----WSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKST  149 (244)
Q Consensus        78 ~i~iwd~~~~~~~~~~~~~~~~~----~~~v~~~~----~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~  149 (244)
                      .|++||  +.++... ...+..+    ...+.+++    |+|+++++++++.|+.|++||+++.+.     .....+...
T Consensus       140 ~i~vwd--~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~-----~~~~~~~~~  211 (357)
T 3i2n_A          140 TVKVWD--PRQKDDP-VANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMAL-----RWETNIKNG  211 (357)
T ss_dssp             CEEEEC--TTSCSSC-SEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEE-----EEEEECSSC
T ss_pred             eEEEEe--CCCCCCc-ceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCce-----eeecCCCCc
Confidence            999999  6665421 2222333    33788888    789999999999999999999988754     233556789


Q ss_pred             eeEEEecC---CCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCC-EE
Q psy11529        150 ITCLDWHP---NNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGN-KL  225 (244)
Q Consensus       150 v~~~~~~p---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l  225 (244)
                      +.+++|+|   ++++|++++.||.|++||++.....             .......+..|   ...|.+++|+|+++ +|
T Consensus       212 v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-------------~~~~~~~~~~~---~~~v~~~~~~~~~~~~l  275 (357)
T 3i2n_A          212 VCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPT-------------KGFASVSEKAH---KSTVWQVRHLPQNRELF  275 (357)
T ss_dssp             EEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETT-------------TEEEEEEEECC---SSCEEEEEEETTEEEEE
T ss_pred             eEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcc-------------cceeeeccCCC---cCCEEEEEECCCCCcEE
Confidence            99999999   8999999999999999999643211             00111234477   89999999999999 89


Q ss_pred             EEeeCCCcEEEEeCCC
Q psy11529        226 CWTSHDGSINVRMSQQ  241 (244)
Q Consensus       226 ~~~~~dg~i~vwd~~~  241 (244)
                      ++++.||.|++||+++
T Consensus       276 ~~~~~dg~i~iwd~~~  291 (357)
T 3i2n_A          276 LTAGGAGGLHLWKYEY  291 (357)
T ss_dssp             EEEETTSEEEEEEEEC
T ss_pred             EEEeCCCcEEEeecCC
Confidence            9999999999999874

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=1.1e-33  Score=213.70  Aligned_cols=209  Identities=13%  Similarity=0.064  Sum_probs=170.0

Q ss_pred             eCCCceEEEEEcCCCC-eEEEecCCCeEEEeee-ccCCCcceeeeeecc--CCCceEEEEeCCCCCeEEEEeCCccEEEE
Q psy11529          7 FGINPVTTHAWNNTRQ-QLAFTPNNQEVHLYQY-EKAANDWSQLDVLDG--HDLKVTGIDWAPNTNRIVTCSADRNAYVW   82 (244)
Q Consensus         7 ~~~~~v~~~~~~~~~~-~l~~~~~d~~v~v~~~-~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d~~i~iw   82 (244)
                      .|...|.+++|+|+++ +|++++.||.|++|++ ..     .....+.+  |...|.+++|+| +.+|++++.|+.|++|
T Consensus        54 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~-----~~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iw  127 (342)
T 1yfq_A           54 RYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGS-----PSFQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVI  127 (342)
T ss_dssp             ECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSS-----SSEEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEE
T ss_pred             ecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccC-----CceEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEE
Confidence            4688999999999999 9999999999999999 77     34477788  999999999999 9999999999999999


Q ss_pred             eeeCCC---------CCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeec-CCCceEEEeeecCCCCceeE
Q psy11529         83 TQNNDD---------KKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFES-ENDWWVAKHIKKPIKSTITC  152 (244)
Q Consensus        83 d~~~~~---------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~~~~~v~~  152 (244)
                      |  +.+         ++....   ..+...+.+++|+|++  +++++.++.|++||++. ...  ........+...+.+
T Consensus       128 d--~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~--~~~~~~~~~~~~i~~  198 (342)
T 1yfq_A          128 D--PRNYGDGVIAVKNLNSNN---TKVKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDD--NGTIEESGLKYQIRD  198 (342)
T ss_dssp             C--HHHHTTBCEEEEESCSSS---SSSCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTC--CCEEEECSCSSCEEE
T ss_pred             c--ccccccccccccCCeeeE---EeeCCceEEEEecCCc--EEEEeCCCeEEEEECCccccc--cceeeecCCCCceeE
Confidence            9  444         332222   2377899999999987  99999999999999988 543  123345567789999


Q ss_pred             EEecC-CCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCC------CCCCeEEEEEecCCCEE
Q psy11529        153 LDWHP-NNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSS------GGGWIHSVAFSKDGNKL  225 (244)
Q Consensus       153 ~~~~p-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~v~~~~~s~~~~~l  225 (244)
                      ++|+| +++++++++.||.|++|+++.....            ...+....+..|..      +...|.+++|+|++++|
T Consensus       199 i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l  266 (342)
T 1yfq_A          199 VALLPKEQEGYACSSIDGRVAVEFFDDQGDD------------YNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFL  266 (342)
T ss_dssp             EEECSGGGCEEEEEETTSEEEEEECCTTCCS------------TTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCE
T ss_pred             EEECCCCCCEEEEEecCCcEEEEEEcCCCcc------------cccccceeeecccccccccccceeEEEEEEcCCCCEE
Confidence            99999 9999999999999999998432000            00255566666510      02389999999999999


Q ss_pred             EEeeCCCcEEEEeCCCC
Q psy11529        226 CWTSHDGSINVRMSQQV  242 (244)
Q Consensus       226 ~~~~~dg~i~vwd~~~~  242 (244)
                      ++++.||.|++||+++.
T Consensus       267 ~~~~~dg~i~vwd~~~~  283 (342)
T 1yfq_A          267 YTAGSDGIISCWNLQTR  283 (342)
T ss_dssp             EEEETTSCEEEEETTTT
T ss_pred             EEecCCceEEEEcCccH
Confidence            99999999999999854

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=4e-34  Score=223.42  Aligned_cols=207  Identities=10%  Similarity=0.159  Sum_probs=161.5

Q ss_pred             CceEEEEEcCCC--CeEEEecCCCeEEEeeeccCCCcce-------------------------------------eeee
Q psy11529         10 NPVTTHAWNNTR--QQLAFTPNNQEVHLYQYEKAANDWS-------------------------------------QLDV   50 (244)
Q Consensus        10 ~~v~~~~~~~~~--~~l~~~~~d~~v~v~~~~~~~~~~~-------------------------------------~~~~   50 (244)
                      ++|.+++|+|++  .+|++++.|+.|++|++..  +...                                     ....
T Consensus        94 ~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (447)
T 3dw8_B           94 EKINKIRWLPQKNAAQFLLSTNDKTIKLWKISE--RDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRI  171 (447)
T ss_dssp             CCCCEEEECCCCSSSEEEEEECSSCEEEEEEEE--EEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEE
T ss_pred             CceEEEEEcCCCCcceEEEeCCCCeEEEEeccc--ccCCcceecccCccccccCcccccceEeccccchheeeeccceEE
Confidence            789999999998  7899999999999999865  2110                                     0112


Q ss_pred             -eccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCCCC-CceeeE-----EEeccCcceEEEEECCCC-CeEEEeeCC
Q psy11529         51 -LDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDK-KWKPTL-----VLLRINRAATCVKWSPLE-NKFAAGSGA  122 (244)
Q Consensus        51 -~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-~~~~~~-----~~~~~~~~v~~~~~~~~~-~~l~~~~~d  122 (244)
                       ..+|...|.+++|+|++++|+++ .|+.|++||  +... ......     .+..|...|.+++|+|++ ++|++++.|
T Consensus       172 ~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d  248 (447)
T 3dw8_B          172 FANAHTYHINSISINSDYETYLSA-DDLRINLWH--LEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSK  248 (447)
T ss_dssp             ECSCCSSCCCEEEECTTSSEEEEE-CSSEEEEEE--TTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETT
T ss_pred             eccCCCcceEEEEEcCCCCEEEEe-CCCeEEEEE--CCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCC
Confidence             36799999999999999999998 799999999  5532 211111     134688899999999998 999999999


Q ss_pred             CeEEEEEeecCCCceEEEeeecCCCC------------ceeEEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCC
Q psy11529        123 RLISVCYFESENDWWVAKHIKKPIKS------------TITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNW  190 (244)
Q Consensus       123 ~~i~i~d~~~~~~~~~~~~~~~~~~~------------~v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  190 (244)
                      +.|++||++..............+..            .|.+++|+|++++|++++. +.|++||++.            
T Consensus       249 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~------------  315 (447)
T 3dw8_B          249 GTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNM------------  315 (447)
T ss_dssp             SCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTC------------
T ss_pred             CeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCC------------
Confidence            99999999887631111233444443            8999999999999999999 9999999931            


Q ss_pred             CccccccceeEEecCCCCCCC---------------CeEEEEEecCCCEEEEeeCCCcEEEEeCCCC
Q psy11529        191 GSKSTLGNCLVELNNSSSGGG---------------WIHSVAFSKDGNKLCWTSHDGSINVRMSQQV  242 (244)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~---------------~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~  242 (244)
                           .++++..+..|   ..               .+..++|+|++++|++++.||.|++||+++.
T Consensus       316 -----~~~~~~~~~~~---~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~  374 (447)
T 3dw8_B          316 -----ENRPVETYQVH---EYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTK  374 (447)
T ss_dssp             -----CSSCSCCEESC---GGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTC
T ss_pred             -----Cccccceeecc---ccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCC
Confidence                 25566666665   32               1335999999999999999999999999754

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=1.3e-33  Score=217.90  Aligned_cols=204  Identities=20%  Similarity=0.265  Sum_probs=168.8

Q ss_pred             eEEEEEcCCCCeEE-EecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCC-CCCeEEEEeCCccEEEEeeeCCCC
Q psy11529         12 VTTHAWNNTRQQLA-FTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAP-NTNRIVTCSADRNAYVWTQNNDDK   89 (244)
Q Consensus        12 v~~~~~~~~~~~l~-~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~   89 (244)
                      ...++++|+...++ +++.+|.|+||++...+........+.+|...|.+++|+| ++++|++++.|+.|++||  +.++
T Consensus        37 ~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~--~~~~  114 (402)
T 2aq5_A           37 SGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWE--IPDG  114 (402)
T ss_dssp             SCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEE--CCTT
T ss_pred             CCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEE--ccCC
Confidence            34577888765444 4688999999998652211134556788999999999999 999999999999999999  6665


Q ss_pred             Cc-----eeeEEEeccCcceEEEEECCCC-CeEEEeeCCCeEEEEEeecCCCceEEEeee--cCCCCceeEEEecCCCCE
Q psy11529         90 KW-----KPTLVLLRINRAATCVKWSPLE-NKFAAGSGARLISVCYFESENDWWVAKHIK--KPIKSTITCLDWHPNNHL  161 (244)
Q Consensus        90 ~~-----~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~--~~~~~~v~~~~~~p~~~~  161 (244)
                      ..     .....+.+|...|.+++|+|++ ++|++++.|+.|++||+++++.    ....  ..|...|.+++|+|++++
T Consensus       115 ~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~  190 (402)
T 2aq5_A          115 GLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAA----VLTLGPDVHPDTIYSVDWSRDGAL  190 (402)
T ss_dssp             CCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEE----EEEECTTTCCSCEEEEEECTTSSC
T ss_pred             CCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCc----cEEEecCCCCCceEEEEECCCCCE
Confidence            32     2345567899999999999997 6999999999999999998754    3344  678899999999999999


Q ss_pred             EEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEe-cCCCCCCCC-eEEEEEecCCCEEEEe---eCCCcEEE
Q psy11529        162 LGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVEL-NNSSSGGGW-IHSVAFSKDGNKLCWT---SHDGSINV  236 (244)
Q Consensus       162 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-v~~~~~s~~~~~l~~~---~~dg~i~v  236 (244)
                      |++++.||.|++||+                  ..++.+..+ ..|   ... +.+++|+|++++|++|   +.|+.|++
T Consensus       191 l~~~~~d~~i~iwd~------------------~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~i  249 (402)
T 2aq5_A          191 ICTSCRDKRVRVIEP------------------RKGTVVAEKDRPH---EGTRPVHAVFVSEGKILTTGFSRMSERQVAL  249 (402)
T ss_dssp             EEEEETTSEEEEEET------------------TTTEEEEEEECSS---CSSSCCEEEECSTTEEEEEEECTTCCEEEEE
T ss_pred             EEEEecCCcEEEEeC------------------CCCceeeeeccCC---CCCcceEEEEcCCCcEEEEeccCCCCceEEE
Confidence            999999999999999                  567777777 666   544 8999999999999999   78999999


Q ss_pred             EeCCCC
Q psy11529        237 RMSQQV  242 (244)
Q Consensus       237 wd~~~~  242 (244)
                      ||+++.
T Consensus       250 wd~~~~  255 (402)
T 2aq5_A          250 WDTKHL  255 (402)
T ss_dssp             EETTBC
T ss_pred             EcCccc
Confidence            999864

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=3.6e-33  Score=214.90  Aligned_cols=206  Identities=17%  Similarity=0.145  Sum_probs=166.5

Q ss_pred             CCceEEEEEc----CCCCe-EEEecCCCeEEEeeeccCCC--cceeee-----ee-------ccCCCceEEEEeCCCCCe
Q psy11529          9 INPVTTHAWN----NTRQQ-LAFTPNNQEVHLYQYEKAAN--DWSQLD-----VL-------DGHDLKVTGIDWAPNTNR   69 (244)
Q Consensus         9 ~~~v~~~~~~----~~~~~-l~~~~~d~~v~v~~~~~~~~--~~~~~~-----~~-------~~~~~~v~~~~~~~~~~~   69 (244)
                      ...|.+++|+    |++++ |++++.|+.|++||+.....  ....+.     .+       ..|...|.+++|+|++ +
T Consensus       121 ~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~  199 (397)
T 1sq9_A          121 KHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-L  199 (397)
T ss_dssp             GSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-E
T ss_pred             CCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-e
Confidence            4899999999    99999 99999999999999865000  002222     55       4488999999999999 9


Q ss_pred             EEEEeCCccEEEEeeeCCCCCceeeEEEec---c---CcceEEEEECCCCCeEEEeeCC---CeEEEEEeecCCCceEEE
Q psy11529         70 IVTCSADRNAYVWTQNNDDKKWKPTLVLLR---I---NRAATCVKWSPLENKFAAGSGA---RLISVCYFESENDWWVAK  140 (244)
Q Consensus        70 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~---~---~~~v~~~~~~~~~~~l~~~~~d---~~i~i~d~~~~~~~~~~~  140 (244)
                      +++++.|+.|++||  +.+++.  ...+..   |   ...+.+++|+|++++|++++.|   +.|++||+++.+.    .
T Consensus       200 l~~~~~dg~i~i~d--~~~~~~--~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~----~  271 (397)
T 1sq9_A          200 IATGFNNGTVQISE--LSTLRP--LYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGER----I  271 (397)
T ss_dssp             EEEECTTSEEEEEE--TTTTEE--EEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCE----E
T ss_pred             EEEEeCCCcEEEEE--CCCCce--eEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcc----c
Confidence            99999999999999  676653  334445   6   8899999999999999999999   9999999998764    3


Q ss_pred             eeecC-------------CCCceeEEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEec---
Q psy11529        141 HIKKP-------------IKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELN---  204 (244)
Q Consensus       141 ~~~~~-------------~~~~v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  204 (244)
                      .....             |...|.+++|+|++++|++++.||.|++||+                  ..++.+..+.   
T Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~------------------~~~~~~~~~~~~~  333 (397)
T 1sq9_A          272 GSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDV------------------KTKERITTLNMHC  333 (397)
T ss_dssp             EEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEET------------------TTTEEEEEEECCG
T ss_pred             ceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEc------------------CCCceeEEEeccc
Confidence            33444             7889999999999999999999999999999                  4566666666   


Q ss_pred             ---CC------------CCCCCCeEEEEEecCC----------CEEEEeeCCCcEEEEeCCC
Q psy11529        205 ---NS------------SSGGGWIHSVAFSKDG----------NKLCWTSHDGSINVRMSQQ  241 (244)
Q Consensus       205 ---~~------------~~~~~~v~~~~~s~~~----------~~l~~~~~dg~i~vwd~~~  241 (244)
                         .|            ..+...|.+++|+|++          ++|++++.||.|++||+++
T Consensus       334 ~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~  395 (397)
T 1sq9_A          334 DDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAG  395 (397)
T ss_dssp             GGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC
T ss_pred             CcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCC
Confidence               33            0006789999999998          7999999999999999875

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.3e-33  Score=219.59  Aligned_cols=206  Identities=8%  Similarity=0.041  Sum_probs=166.9

Q ss_pred             CceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCc-ceeeeeec------------------------------------
Q psy11529         10 NPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAAND-WSQLDVLD------------------------------------   52 (244)
Q Consensus        10 ~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~-~~~~~~~~------------------------------------   52 (244)
                      .++.+++|+|+|++|+++ .++.|++||+.+  ++ .+.+..+.                                    
T Consensus         5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (450)
T 2vdu_B            5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQS--PNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKG   81 (450)
T ss_dssp             CCCCEEEECSSSSEEEEE-ETTEEEEEEEET--TTEEEEEEEEECCC---------------------------------
T ss_pred             ccEEEEEecCCCCEEEEE-eCCeEEEEECCC--CCcceeeeecCCccccccccccccchhhccccccccccccccccCcC
Confidence            578999999999977666 578999999876  32 11333332                                    


Q ss_pred             ------------------cCCCceEEEEeCCCCCeE-EEEeCCccEEEEeeeCC--CCCceeeEEEeccCcceEEEEECC
Q psy11529         53 ------------------GHDLKVTGIDWAPNTNRI-VTCSADRNAYVWTQNND--DKKWKPTLVLLRINRAATCVKWSP  111 (244)
Q Consensus        53 ------------------~~~~~v~~~~~~~~~~~l-~~~~~d~~i~iwd~~~~--~~~~~~~~~~~~~~~~v~~~~~~~  111 (244)
                                        +|...|.+++|+|++++| ++++.|+.|++||  +.  +++....+....+...+.+++|+|
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd--~~~~~~~~~~~~~~~~~~~~v~~~~~sp  159 (450)
T 2vdu_B           82 DSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFD--VDKTSKNVLKLRKRFCFSKRPNAISIAE  159 (450)
T ss_dssp             ------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEE--ECSSSSSCEEEEEEEECSSCEEEEEECT
T ss_pred             ccccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEE--CcCCCCceeeeeecccCCCCceEEEEcC
Confidence                              234479999999999996 8898999999999  55  666555554446778999999999


Q ss_pred             CCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCC---CCEEEEeeCCCeEEEEEeeecccccCCCCC
Q psy11529        112 LENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPN---NHLLGCGSTDFKVRVFSAYIKDIESAPQST  188 (244)
Q Consensus       112 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  188 (244)
                      ++++|++++.++.+++|++...............|...|.+++|+|+   +++|++++.|+.|++||+            
T Consensus       160 ~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~------------  227 (450)
T 2vdu_B          160 DDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHY------------  227 (450)
T ss_dssp             TSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEE------------
T ss_pred             CCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEEC------------
Confidence            99999999999999999998765411012244567789999999999   999999999999999999            


Q ss_pred             CCCccccccceeEE-ecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCCC
Q psy11529        189 NWGSKSTLGNCLVE-LNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQV  242 (244)
Q Consensus       189 ~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~  242 (244)
                            ..++.+.. +.+|   ...|.+++|+ ++++|++++.|+.|++||+++.
T Consensus       228 ------~~~~~~~~~~~~h---~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~  272 (450)
T 2vdu_B          228 ------PQCFIVDKWLFGH---KHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTG  272 (450)
T ss_dssp             ------SCTTCEEEECCCC---SSCEEEEEEC-STTEEEEEESSSEEEEEETTTC
T ss_pred             ------CCCceeeeeecCC---CCceEEEEEC-CCCEEEEEeCCCeEEEEECCCC
Confidence                  55666666 4577   8999999999 9999999999999999999864

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=7.3e-33  Score=213.72  Aligned_cols=199  Identities=16%  Similarity=0.271  Sum_probs=171.2

Q ss_pred             CCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCC
Q psy11529          8 GINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNND   87 (244)
Q Consensus         8 ~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~   87 (244)
                      +...|.+++|+|++++|++|+.||.|++|++.+  +  +.+..+.+|...|.+++|+  +.+|++++.|+.|++||  +.
T Consensus       133 ~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~--~--~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d--~~  204 (401)
T 4aez_A          133 ESTYVASVKWSHDGSFLSVGLGNGLVDIYDVES--Q--TKLRTMAGHQARVGCLSWN--RHVLSSGSRSGAIHHHD--VR  204 (401)
T ss_dssp             TTCCEEEEEECTTSSEEEEEETTSCEEEEETTT--C--CEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEE--TT
T ss_pred             CCCCEEEEEECCCCCEEEEECCCCeEEEEECcC--C--eEEEEecCCCCceEEEEEC--CCEEEEEcCCCCEEEEe--cc
Confidence            578999999999999999999999999999977  4  6778888999999999994  67999999999999999  55


Q ss_pred             CCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCC-EEEEee
Q psy11529         88 DKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNH-LLGCGS  166 (244)
Q Consensus        88 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~-~l~~~~  166 (244)
                      .... ....+..|...+.+++|+|++++|++++.|+.|++||+++...    ......|...|.+++|+|++. ++++++
T Consensus       205 ~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~----~~~~~~~~~~v~~~~~~p~~~~ll~~~~  279 (401)
T 4aez_A          205 IANH-QIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIP----KFTKTNHNAAVKAVAWCPWQSNLLATGG  279 (401)
T ss_dssp             SSSC-EEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSE----EEEECCCSSCCCEEEECTTSTTEEEEEC
T ss_pred             cCcc-eeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCc----cEEecCCcceEEEEEECCCCCCEEEEec
Confidence            3322 2444567899999999999999999999999999999998764    445567889999999999775 666654


Q ss_pred             --CCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEE--eeCCCcEEEEeCCC
Q psy11529        167 --TDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCW--TSHDGSINVRMSQQ  241 (244)
Q Consensus       167 --~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~--~~~dg~i~vwd~~~  241 (244)
                        .|+.|++||+                  ..++.+..+..    ...+.+++|+|++++|++  |+.||.|++||+++
T Consensus       280 gs~d~~i~i~d~------------------~~~~~~~~~~~----~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~  336 (401)
T 4aez_A          280 GTMDKQIHFWNA------------------ATGARVNTVDA----GSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSS  336 (401)
T ss_dssp             CTTTCEEEEEET------------------TTCCEEEEEEC----SSCEEEEEECSSSSEEEEEECTTTCEEEEEEEET
T ss_pred             CCCCCEEEEEEC------------------CCCCEEEEEeC----CCcEEEEEECCCCCeEEEEeecCCCcEEEEecCC
Confidence              7999999999                  66777777764    678999999999999998  44899999999876

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1e-32  Score=212.98  Aligned_cols=203  Identities=19%  Similarity=0.276  Sum_probs=167.2

Q ss_pred             eCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeC
Q psy11529          7 FGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNN   86 (244)
Q Consensus         7 ~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~   86 (244)
                      .|...|.+++|  +++.|++++.|+.|++||+... .  .....+.+|...|.+++|+|++++|++++.|+.|++||  +
T Consensus       174 ~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~-~--~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd--~  246 (401)
T 4aez_A          174 GHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIA-N--HQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWD--A  246 (401)
T ss_dssp             CCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSS-S--CEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEE--T
T ss_pred             CCCCceEEEEE--CCCEEEEEcCCCCEEEEecccC-c--ceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEcc--C
Confidence            46889999999  4579999999999999999742 2  56778889999999999999999999999999999999  6


Q ss_pred             CCCCceeeEEEeccCcceEEEEECCCCC-eEEEee--CCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEE
Q psy11529         87 DDKKWKPTLVLLRINRAATCVKWSPLEN-KFAAGS--GARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLG  163 (244)
Q Consensus        87 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~  163 (244)
                      .+++.  ...+..|...+.+++|+|++. .+++++  .|+.|++||+++++.    .... .+...+.+++|+|++++++
T Consensus       247 ~~~~~--~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~----~~~~-~~~~~v~~~~~s~~~~~l~  319 (401)
T 4aez_A          247 RSSIP--KFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGAR----VNTV-DAGSQVTSLIWSPHSKEIM  319 (401)
T ss_dssp             TCSSE--EEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCE----EEEE-ECSSCEEEEEECSSSSEEE
T ss_pred             CCCCc--cEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCE----EEEE-eCCCcEEEEEECCCCCeEE
Confidence            76653  344567889999999999765 455544  699999999998765    2222 3457899999999999999


Q ss_pred             E--eeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCC
Q psy11529        164 C--GSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQ  241 (244)
Q Consensus       164 ~--~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~  241 (244)
                      +  |+.||.|++||+....                ......+.+|   ...|.+++|+|++++|++++.||.|++||+.+
T Consensus       320 ~~~g~~dg~i~v~~~~~~~----------------~~~~~~~~~h---~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~  380 (401)
T 4aez_A          320 STHGFPDNNLSIWSYSSSG----------------LTKQVDIPAH---DTRVLYSALSPDGRILSTAASDENLKFWRVYD  380 (401)
T ss_dssp             EEECTTTCEEEEEEEETTE----------------EEEEEEEECC---SSCCCEEEECTTSSEEEEECTTSEEEEEECCC
T ss_pred             EEeecCCCcEEEEecCCcc----------------ceeEEEecCC---CCCEEEEEECCCCCEEEEEeCCCcEEEEECCC
Confidence            9  4489999999994211                2334456677   89999999999999999999999999999976


Q ss_pred             C
Q psy11529        242 V  242 (244)
Q Consensus       242 ~  242 (244)
                      .
T Consensus       381 ~  381 (401)
T 4aez_A          381 G  381 (401)
T ss_dssp             -
T ss_pred             C
Confidence            3

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.1e-33  Score=217.99  Aligned_cols=196  Identities=14%  Similarity=0.073  Sum_probs=159.6

Q ss_pred             CCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCC-----ceEEEEeCCCCCeEEEEeCCccEEEEe
Q psy11529          9 INPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDL-----KVTGIDWAPNTNRIVTCSADRNAYVWT   83 (244)
Q Consensus         9 ~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~~~~~d~~i~iwd   83 (244)
                      .+.|.+++|||+|++||+++.||.|++|+.++      ++..+. |..     .|.+++|||+|++|++|+.||+|++||
T Consensus        85 ~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~------~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd  157 (588)
T 2j04_A           85 VCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK------MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFS  157 (588)
T ss_dssp             SCCEEEEEECSSSSCEEEEETTSCEEEEETTE------EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEE
T ss_pred             CCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc------eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEE
Confidence            67899999999999999999999999999533      555566 665     599999999999999999999999999


Q ss_pred             eeCCCCCc-----eeeEEE----eccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEE
Q psy11529         84 QNNDDKKW-----KPTLVL----LRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLD  154 (244)
Q Consensus        84 ~~~~~~~~-----~~~~~~----~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~  154 (244)
                        ..++..     .....+    .+|...|.+++|+|+|  +++++.|+.+++||+..+............|...|.+++
T Consensus       158 --~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~sva  233 (588)
T 2j04_A          158 --IRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLK  233 (588)
T ss_dssp             --CCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEE
T ss_pred             --CCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEE
Confidence              666643     122333    4567899999999999  888899999999999887641111223346778999999


Q ss_pred             ecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEE--ecCCCEEEEeeCCC
Q psy11529        155 WHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAF--SKDGNKLCWTSHDG  232 (244)
Q Consensus       155 ~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--s~~~~~l~~~~~dg  232 (244)
                      |+  |+.||+++ +++|++||+                  ..++......+|   ...+..++|  +||+..|++++.||
T Consensus       234 Fs--g~~LASa~-~~tIkLWd~------------------~~~~~~~~~~gh---~~~V~~va~~~s~d~~~La~a~edG  289 (588)
T 2j04_A          234 IV--DYKVVLTC-PGYVHKIDL------------------KNYSISSLKTGS---LENFHIIPLNHEKESTILLMSNKTS  289 (588)
T ss_dssp             EE--TTEEEEEC-SSEEEEEET------------------TTTEEEEEECSC---CSCCCEEEETTCSSCEEEEECSSCE
T ss_pred             EE--CCEEEEEe-CCeEEEEEC------------------CCCeEEEEEcCC---CceEEEEEeeeCCCCCEEEEEcCCC
Confidence            99  68899887 699999998                  444443333377   899999999  99999999999999


Q ss_pred             cEEEEeCC
Q psy11529        233 SINVRMSQ  240 (244)
Q Consensus       233 ~i~vwd~~  240 (244)
                      + ++|..+
T Consensus       290 ~-klw~~d  296 (588)
T 2j04_A          290 Y-KVLLED  296 (588)
T ss_dssp             E-EEEESS
T ss_pred             C-EEEeec
Confidence            9 999875

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=1.2e-32  Score=238.64  Aligned_cols=222  Identities=14%  Similarity=0.228  Sum_probs=182.2

Q ss_pred             EeCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeee
Q psy11529          6 SFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQN   85 (244)
Q Consensus         6 ~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~   85 (244)
                      ..|.+.|++++|+|+|++|++|+.||.|++|++.+  +  +.+..+.+|...|.+++|+|++++|++++.|+.|++||  
T Consensus       612 ~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~--~--~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd--  685 (1249)
T 3sfz_A          612 RPHTDAVYHACFSQDGQRIASCGADKTLQVFKAET--G--EKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWD--  685 (1249)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT--C--CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEE--
T ss_pred             ecccccEEEEEECCCCCEEEEEeCCCeEEEEECCC--C--CEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEE--
Confidence            34789999999999999999999999999999977  5  67888999999999999999999999999999999999  


Q ss_pred             CCCCCceeeEEEeccCcceEEEEECC--CCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEE
Q psy11529         86 NDDKKWKPTLVLLRINRAATCVKWSP--LENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLG  163 (244)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~  163 (244)
                      ..+++..  ..+..|...+.+++|+|  ++..+++++.|+.|++||++++..    ......|...|.+++|+|++++++
T Consensus       686 ~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~----~~~~~~h~~~v~~~~~sp~~~~l~  759 (1249)
T 3sfz_A          686 SATGKLV--HTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKEC----RNTMFGHTNSVNHCRFSPDDELLA  759 (1249)
T ss_dssp             TTTCCEE--EEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSE----EEEECCCSSCEEEEEECSSTTEEE
T ss_pred             CCCCceE--EEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcch----hheecCCCCCEEEEEEecCCCEEE
Confidence            7777643  44567999999999999  456899999999999999998864    455678889999999999999999


Q ss_pred             EeeCCCeEEEEEeeecccccCCC--------------------CCCCCc----------------cccccceeEEec-CC
Q psy11529        164 CGSTDFKVRVFSAYIKDIESAPQ--------------------STNWGS----------------KSTLGNCLVELN-NS  206 (244)
Q Consensus       164 ~~~~dg~i~i~d~~~~~~~~~~~--------------------~~~~~~----------------~~~~~~~~~~~~-~~  206 (244)
                      +++.||.|++||++.........                    ...+..                ....+.....+. +|
T Consensus       760 s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~  839 (1249)
T 3sfz_A          760 SCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGH  839 (1249)
T ss_dssp             EEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSS
T ss_pred             EEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCC
Confidence            99999999999986543211000                    000000                111223333333 55


Q ss_pred             CCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCCC
Q psy11529        207 SSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQV  242 (244)
Q Consensus       207 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~  242 (244)
                         ...+.+++|+|+++++++++.||.|++||+++.
T Consensus       840 ---~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~  872 (1249)
T 3sfz_A          840 ---HSTIQYCDFSPYDHLAVIALSQYCVELWNIDSR  872 (1249)
T ss_dssp             ---SSCCCEEEECSSTTEEEEECSSSCEEEEETTTT
T ss_pred             ---CCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Confidence               789999999999999999999999999998753

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=3.8e-33  Score=210.68  Aligned_cols=205  Identities=16%  Similarity=0.116  Sum_probs=169.0

Q ss_pred             eEEeCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCc-ceeeeeeccCCCceEEEEeCCCCC-eEEEEeCCccEEE
Q psy11529          4 VYSFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAAND-WSQLDVLDGHDLKVTGIDWAPNTN-RIVTCSADRNAYV   81 (244)
Q Consensus         4 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~i   81 (244)
                      +...|.+.|++++|+|++++|++++.|+.|++|++..  +. ......+.+|...|.+++|+|+++ +|++++.|+.|++
T Consensus         6 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~   83 (342)
T 1yfq_A            6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDI--QAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILK   83 (342)
T ss_dssp             CSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEET--TTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEE
T ss_pred             cccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCC--CCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEE
Confidence            3345789999999999999999999999999999976  31 123455568999999999999999 9999999999999


Q ss_pred             EeeeC-CCCCceeeEEEec--cCcceEEEEECCCCCeEEEeeCCCeEEEEEeec---------CCCceEEEeeecCCCCc
Q psy11529         82 WTQNN-DDKKWKPTLVLLR--INRAATCVKWSPLENKFAAGSGARLISVCYFES---------ENDWWVAKHIKKPIKST  149 (244)
Q Consensus        82 wd~~~-~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~---------~~~~~~~~~~~~~~~~~  149 (244)
                      ||  + .+++   ...+..  |...|.+++|+| +++|++++.|+.|++||++.         .+.    ... ..+...
T Consensus        84 wd--~~~~~~---~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~----~~~-~~~~~~  152 (342)
T 1yfq_A           84 VD--LIGSPS---FQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLN----SNN-TKVKNK  152 (342)
T ss_dssp             EC--SSSSSS---EEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESC----SSS-SSSCCC
T ss_pred             EE--eccCCc---eEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCe----eeE-EeeCCc
Confidence            99  7 6665   345566  899999999999 99999999999999999987         443    112 237789


Q ss_pred             eeEEEecCCCCEEEEeeCCCeEEEEEeee-cccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEec-CCCEEEE
Q psy11529        150 ITCLDWHPNNHLLGCGSTDFKVRVFSAYI-KDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSK-DGNKLCW  227 (244)
Q Consensus       150 v~~~~~~p~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~  227 (244)
                      +.+++|+|++  +++++.|+.|++||++. ..                .........+   ...+.+++|+| ++++|++
T Consensus       153 v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~----------------~~~~~~~~~~---~~~i~~i~~~~~~~~~l~~  211 (342)
T 1yfq_A          153 IFTMDTNSSR--LIVGMNNSQVQWFRLPLCED----------------DNGTIEESGL---KYQIRDVALLPKEQEGYAC  211 (342)
T ss_dssp             EEEEEECSSE--EEEEESTTEEEEEESSCCTT----------------CCCEEEECSC---SSCEEEEEECSGGGCEEEE
T ss_pred             eEEEEecCCc--EEEEeCCCeEEEEECCcccc----------------ccceeeecCC---CCceeEEEECCCCCCEEEE
Confidence            9999999987  89999999999999842 11                1122233345   78899999999 9999999


Q ss_pred             eeCCCcEEEEeCCCC
Q psy11529        228 TSHDGSINVRMSQQV  242 (244)
Q Consensus       228 ~~~dg~i~vwd~~~~  242 (244)
                      ++.||.|++|+++..
T Consensus       212 ~~~dg~i~i~~~~~~  226 (342)
T 1yfq_A          212 SSIDGRVAVEFFDDQ  226 (342)
T ss_dssp             EETTSEEEEEECCTT
T ss_pred             EecCCcEEEEEEcCC
Confidence            999999999998753

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=5.7e-33  Score=224.78  Aligned_cols=205  Identities=12%  Similarity=0.107  Sum_probs=175.7

Q ss_pred             CCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCc-eEEEEeCC--CCCeEEEEeCCccEEEEee
Q psy11529          8 GINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLK-VTGIDWAP--NTNRIVTCSADRNAYVWTQ   84 (244)
Q Consensus         8 ~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~--~~~~l~~~~~d~~i~iwd~   84 (244)
                      +.+.|.+++|+|++++|++++ ++.|++|++.+.....+....+.+|... |.+++|+|  ++++|++++.|+.|++|| 
T Consensus        17 ~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~-   94 (615)
T 1pgu_A           17 QRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWG-   94 (615)
T ss_dssp             CTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEE-
T ss_pred             ccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEe-
Confidence            478899999999999999998 7899999998621122467788999999 99999999  999999999999999999 


Q ss_pred             eCCCC------CceeeEEEeccCcceEEEEECCCCCeEEEeeCC----CeEEEEEeecCCCceEEEeeecCCCCceeEEE
Q psy11529         85 NNDDK------KWKPTLVLLRINRAATCVKWSPLENKFAAGSGA----RLISVCYFESENDWWVAKHIKKPIKSTITCLD  154 (244)
Q Consensus        85 ~~~~~------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~  154 (244)
                       +.++      .......+..|...+.+++|+|++++|++++.+    +.|.+||  .++    .......|...|.+++
T Consensus        95 -~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~----~~~~~~~~~~~v~~~~  167 (615)
T 1pgu_A           95 -WTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGN----SLGEVSGHSQRINACH  167 (615)
T ss_dssp             -EEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCC----EEEECCSCSSCEEEEE
T ss_pred             -CCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCC----cceeeecCCccEEEEE
Confidence             5444      333445556788999999999999999999987    6788877  333    3455677889999999


Q ss_pred             ecCCCC-EEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCC---CeEEEEEecC-CCEEEEee
Q psy11529        155 WHPNNH-LLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGG---WIHSVAFSKD-GNKLCWTS  229 (244)
Q Consensus       155 ~~p~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~s~~-~~~l~~~~  229 (244)
                      |+|+++ ++++++.|+.|++||+                  ..++.+..+..|   ..   .|.+++|+|+ +++|++++
T Consensus       168 ~~~~~~~~l~~~~~d~~v~vwd~------------------~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~l~~~~  226 (615)
T 1pgu_A          168 LKQSRPMRSMTVGDDGSVVFYQG------------------PPFKFSASDRTH---HKQGSFVRDVEFSPDSGEFVITVG  226 (615)
T ss_dssp             ECSSSSCEEEEEETTTEEEEEET------------------TTBEEEEEECSS---SCTTCCEEEEEECSTTCCEEEEEE
T ss_pred             ECCCCCcEEEEEeCCCcEEEEeC------------------CCcceeeeeccc---CCCCceEEEEEECCCCCCEEEEEe
Confidence            999998 8999999999999998                  677888888888   77   8999999999 99999999


Q ss_pred             CCCcEEEEeCCCC
Q psy11529        230 HDGSINVRMSQQV  242 (244)
Q Consensus       230 ~dg~i~vwd~~~~  242 (244)
                      .||.|++||+++.
T Consensus       227 ~dg~i~vwd~~~~  239 (615)
T 1pgu_A          227 SDRKISCFDGKSG  239 (615)
T ss_dssp             TTCCEEEEETTTC
T ss_pred             CCCeEEEEECCCC
Confidence            9999999998764

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.9e-32  Score=203.27  Aligned_cols=199  Identities=10%  Similarity=0.048  Sum_probs=169.6

Q ss_pred             EEeCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEee
Q psy11529          5 YSFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQ   84 (244)
Q Consensus         5 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~   84 (244)
                      +..|.++|++++| |++++|++++.||.|++|++.+  +  .....+..|...|.+++|+|++++|++++.|+.+++|++
T Consensus        14 l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~--~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~   88 (313)
T 3odt_A           14 LKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDD--Q--WLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPL   88 (313)
T ss_dssp             ECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESS--S--EEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEET
T ss_pred             hhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCC--C--EEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEe
Confidence            4457899999999 9999999999999999999977  4  667788889999999999999999999999999999994


Q ss_pred             eCCCC-CceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecC-CCCEE
Q psy11529         85 NNDDK-KWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHP-NNHLL  162 (244)
Q Consensus        85 ~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~l  162 (244)
                        ... .......+..|...+.+++|  +++++++++.|+.|++||  ...    .......|...+.+++|+| +++++
T Consensus        89 --~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~----~~~~~~~~~~~v~~~~~~~~~~~~l  158 (313)
T 3odt_A           89 --FATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGS----LVYNLQAHNASVWDAKVVSFSENKF  158 (313)
T ss_dssp             --TCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTE----EEEEEECCSSCEEEEEEEETTTTEE
T ss_pred             --eecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCc----EEEecccCCCceeEEEEccCCCCEE
Confidence              433 22234455678999999999  577999999999999999  222    3455567889999999998 89999


Q ss_pred             EEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecC-CCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCC
Q psy11529        163 GCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNN-SSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQ  241 (244)
Q Consensus       163 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~  241 (244)
                      ++++.||.|++||.                    .+....+.. |   ...+.+++|+|++. +++++.||.|++||+++
T Consensus       159 ~~~~~d~~i~i~d~--------------------~~~~~~~~~~~---~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~  214 (313)
T 3odt_A          159 LTASADKTIKLWQN--------------------DKVIKTFSGIH---NDVVRHLAVVDDGH-FISCSNDGLIKLVDMHT  214 (313)
T ss_dssp             EEEETTSCEEEEET--------------------TEEEEEECSSC---SSCEEEEEEEETTE-EEEEETTSEEEEEETTT
T ss_pred             EEEECCCCEEEEec--------------------CceEEEEeccC---cccEEEEEEcCCCe-EEEccCCCeEEEEECCc
Confidence            99999999999995                    455666666 5   88999999999998 88999999999999986


Q ss_pred             C
Q psy11529        242 V  242 (244)
Q Consensus       242 ~  242 (244)
                      .
T Consensus       215 ~  215 (313)
T 3odt_A          215 G  215 (313)
T ss_dssp             C
T ss_pred             h
Confidence            4

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=2.1e-32  Score=214.87  Aligned_cols=201  Identities=20%  Similarity=0.161  Sum_probs=173.6

Q ss_pred             EeCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeC--CCCCeEEEEeCCccEEEEe
Q psy11529          6 SFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWA--PNTNRIVTCSADRNAYVWT   83 (244)
Q Consensus         6 ~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~d~~i~iwd   83 (244)
                      ..|.++|.+++|+|++ +|++|+.||.|++||+.+  +  +....+.+|...|.+++|+  +++.++++++.|+.|++||
T Consensus       159 ~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~--~--~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd  233 (464)
T 3v7d_B          159 SGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKK--G--CCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWK  233 (464)
T ss_dssp             CCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTT--T--EEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEE
T ss_pred             eCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCC--C--cEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEee
Confidence            3478999999999988 999999999999999987  5  7788899999999999998  5778999999999999999


Q ss_pred             eeCCCCCcee---------------------eEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEee
Q psy11529         84 QNNDDKKWKP---------------------TLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHI  142 (244)
Q Consensus        84 ~~~~~~~~~~---------------------~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~  142 (244)
                        +.++....                     .....+|...+.++  +++++++++++.|+.|++||+++.+.    ...
T Consensus       234 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~----~~~  305 (464)
T 3v7d_B          234 --LPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKC----LYI  305 (464)
T ss_dssp             --CCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEE----EEE
T ss_pred             --CCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcE----EEE
Confidence              55543221                     22345667777776  56788999999999999999987754    455


Q ss_pred             ecCCCCceeEEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCC
Q psy11529        143 KKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDG  222 (244)
Q Consensus       143 ~~~~~~~v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~  222 (244)
                      ...|...+.+++|+|+++++++|+.||.|++||+                  .+++++..+.+|   ...|.+++|+  +
T Consensus       306 ~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~------------------~~~~~~~~~~~h---~~~v~~~~~~--~  362 (464)
T 3v7d_B          306 LSGHTDRIYSTIYDHERKRCISASMDTTIRIWDL------------------ENGELMYTLQGH---TALVGLLRLS--D  362 (464)
T ss_dssp             ECCCSSCEEEEEEETTTTEEEEEETTSCEEEEET------------------TTTEEEEEECCC---SSCEEEEEEC--S
T ss_pred             ecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEC------------------CCCcEEEEEeCC---CCcEEEEEEc--C
Confidence            6778899999999999999999999999999999                  678889999998   8999999997  5


Q ss_pred             CEEEEeeCCCcEEEEeCCCC
Q psy11529        223 NKLCWTSHDGSINVRMSQQV  242 (244)
Q Consensus       223 ~~l~~~~~dg~i~vwd~~~~  242 (244)
                      ++|++++.||.|++||+++.
T Consensus       363 ~~l~s~s~dg~v~vwd~~~~  382 (464)
T 3v7d_B          363 KFLVSAAADGSIRGWDANDY  382 (464)
T ss_dssp             SEEEEEETTSEEEEEETTTC
T ss_pred             CEEEEEeCCCcEEEEECCCC
Confidence            79999999999999999864

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.4e-33  Score=217.81  Aligned_cols=225  Identities=9%  Similarity=0.025  Sum_probs=162.8

Q ss_pred             eCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccC-CCcceeeeeec----------c--CCCceEEEE--eCCCCCeEE
Q psy11529          7 FGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKA-ANDWSQLDVLD----------G--HDLKVTGID--WAPNTNRIV   71 (244)
Q Consensus         7 ~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~-~~~~~~~~~~~----------~--~~~~v~~~~--~~~~~~~l~   71 (244)
                      -|.++|.+++|+|++++|++++.|+.|++||+... .+  +....+.          .  +...+.++.  +++++.+|+
T Consensus       109 ~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  186 (437)
T 3gre_A          109 DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQE--SEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLV  186 (437)
T ss_dssp             ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEET--TEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEE
T ss_pred             cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCC--ceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEE
Confidence            36899999999999999999999999999999520 02  2222221          1  456677776  567899999


Q ss_pred             EEeCCccEEEEeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCcee
Q psy11529         72 TCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTIT  151 (244)
Q Consensus        72 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~  151 (244)
                      +++.|+.|++||  +.+++....+....|...|.+++|+|++++|++++.|+.|++||++.++.   .......+...|.
T Consensus       187 ~~~~d~~i~iwd--~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~~~~~v~  261 (437)
T 3gre_A          187 ALTNLSRVIIFD--IRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVL---IRSWSFGDHAPIT  261 (437)
T ss_dssp             EEETTSEEEEEE--TTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEE---EEEEBCTTCEEEE
T ss_pred             EEeCCCeEEEEe--CCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccE---EEEEecCCCCceE
Confidence            999999999999  77777554444333789999999999999999999999999999998653   2333336777999


Q ss_pred             EEEec----CCCCEEEEeeCCCeEEEEEeeecccccCCCCC---CC-Ccccccccee--EEecC--CCCCCCCeEEEEEe
Q psy11529        152 CLDWH----PNNHLLGCGSTDFKVRVFSAYIKDIESAPQST---NW-GSKSTLGNCL--VELNN--SSSGGGWIHSVAFS  219 (244)
Q Consensus       152 ~~~~~----p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---~~-~~~~~~~~~~--~~~~~--~~~~~~~v~~~~~s  219 (244)
                      +++|+    |++++|++++.||.|++||++...........   .. ......++.+  ..+.+  |   ...|++++|+
T Consensus       262 ~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~~v~~l~~~  338 (437)
T 3gre_A          262 HVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRS---LNALSTISVS  338 (437)
T ss_dssp             EEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCS---GGGGCCEEEE
T ss_pred             EEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceeccccc---CCceEEEEEC
Confidence            99555    56889999999999999999533221100000   00 0000000000  01122  4   6779999999


Q ss_pred             cCCCEEEEeeCCCcEEEEeCCCC
Q psy11529        220 KDGNKLCWTSHDGSINVRMSQQV  242 (244)
Q Consensus       220 ~~~~~l~~~~~dg~i~vwd~~~~  242 (244)
                       ++++|++++.||.|++||+++.
T Consensus       339 -~~~~l~s~~~d~~i~~wd~~~~  360 (437)
T 3gre_A          339 -NDKILLTDEATSSIVMFSLNEL  360 (437)
T ss_dssp             -TTEEEEEEGGGTEEEEEETTCG
T ss_pred             -CceEEEecCCCCeEEEEECCCc
Confidence             8899999999999999999763

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=2e-32  Score=208.69  Aligned_cols=162  Identities=12%  Similarity=0.014  Sum_probs=127.2

Q ss_pred             CceEEEEeCCCCCeEEEE--eCCccEEEEeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecC
Q psy11529         56 LKVTGIDWAPNTNRIVTC--SADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESE  133 (244)
Q Consensus        56 ~~v~~~~~~~~~~~l~~~--~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~  133 (244)
                      ..+.+++|+|||++++++  +.|++|+|||  .++++....   ..|...|.+++|+|+|+++++++.++ +.+|+..++
T Consensus       134 ~~~~~v~fSpDg~~la~as~~~d~~i~iwd--~~~~~~~~~---~~~~~~V~~v~fspdg~~l~s~s~~~-~~~~~~~~~  207 (365)
T 4h5i_A          134 DYTKLVYISREGTVAAIASSKVPAIMRIID--PSDLTEKFE---IETRGEVKDLHFSTDGKVVAYITGSS-LEVISTVTG  207 (365)
T ss_dssp             CCEEEEEECTTSSCEEEEESCSSCEEEEEE--TTTTEEEEE---EECSSCCCEEEECTTSSEEEEECSSC-EEEEETTTC
T ss_pred             cCEEEEEEcCCCCEEEEEECCCCCEEEEeE--CCCCcEEEE---eCCCCceEEEEEccCCceEEecccee-EEEEEeccC
Confidence            347789999999998754  4689999999  777764333   34778899999999999999998655 666666666


Q ss_pred             CCceEEEeeecCCCCceeEEEecCCCCEEEEeeCCC----eEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCC
Q psy11529        134 NDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDF----KVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSG  209 (244)
Q Consensus       134 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (244)
                      ..  ........|...+.+++|+|+++++++++.|+    .+++|++....              ........+..|   
T Consensus       208 ~~--~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~--------------~~~~~~~~~~~~---  268 (365)
T 4h5i_A          208 SC--IARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGN--------------TSVLRSKQVTNR---  268 (365)
T ss_dssp             CE--EEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTE--------------EEEEEEEEEESS---
T ss_pred             cc--eeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccce--------------ecceeeeeecCC---
Confidence            53  23344556778999999999999999998887    68888874221              112234556777   


Q ss_pred             CCCeEEEEEecCCCEEEEeeCCCcEEEEeCCCC
Q psy11529        210 GGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQV  242 (244)
Q Consensus       210 ~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~  242 (244)
                      ...|++++|+|||++||+|+.|++|+|||+++.
T Consensus       269 ~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~  301 (365)
T 4h5i_A          269 FKGITSMDVDMKGELAVLASNDNSIALVKLKDL  301 (365)
T ss_dssp             CSCEEEEEECTTSCEEEEEETTSCEEEEETTTT
T ss_pred             CCCeEeEEECCCCCceEEEcCCCEEEEEECCCC
Confidence            889999999999999999999999999999875

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=5.9e-32  Score=212.30  Aligned_cols=203  Identities=17%  Similarity=0.197  Sum_probs=171.0

Q ss_pred             EeCCCc-eEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEee
Q psy11529          6 SFGINP-VTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQ   84 (244)
Q Consensus         6 ~~~~~~-v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~   84 (244)
                      ..|.+. +.++.+  ++++|++|+.||.|++||+.+  +  +.+..+.+|.+.|.+++|+|++ ++++|+.|++|++|| 
T Consensus       118 ~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~--~--~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd-  189 (464)
T 3v7d_B          118 RGHMTSVITCLQF--EDNYVITGADDKMIRVYDSIN--K--KFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWD-  189 (464)
T ss_dssp             ECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTT--T--EEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEE-
T ss_pred             cCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCC--C--cEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEE-
Confidence            345555 566666  567999999999999999977  5  7888899999999999999987 899999999999999 


Q ss_pred             eCCCCCceeeEEEeccCcceEEEEEC--CCCCeEEEeeCCCeEEEEEeecCCCceE-------------------EEeee
Q psy11529         85 NNDDKKWKPTLVLLRINRAATCVKWS--PLENKFAAGSGARLISVCYFESENDWWV-------------------AKHIK  143 (244)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~d~~i~i~d~~~~~~~~~-------------------~~~~~  143 (244)
                       +.+++.  ...+..|...|.+++|+  ++++++++++.|+.|++||++.......                   .....
T Consensus       190 -~~~~~~--~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (464)
T 3v7d_B          190 -IKKGCC--THVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVL  266 (464)
T ss_dssp             -TTTTEE--EEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEE
T ss_pred             -CCCCcE--EEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEc
Confidence             777763  34456789999999998  5788999999999999999988754211                   13345


Q ss_pred             cCCCCceeEEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCC
Q psy11529        144 KPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGN  223 (244)
Q Consensus       144 ~~~~~~v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  223 (244)
                      .+|...+.++  +++++++++++.||.|++||+                  ..++.+..+.+|   ...|.+++|+|+++
T Consensus       267 ~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~------------------~~~~~~~~~~~~---~~~v~~~~~~~~~~  323 (464)
T 3v7d_B          267 RGHMASVRTV--SGHGNIVVSGSYDNTLIVWDV------------------AQMKCLYILSGH---TDRIYSTIYDHERK  323 (464)
T ss_dssp             CCCSSCEEEE--EEETTEEEEEETTSCEEEEET------------------TTTEEEEEECCC---SSCEEEEEEETTTT
T ss_pred             cCccceEEEE--cCCCCEEEEEeCCCeEEEEEC------------------CCCcEEEEecCC---CCCEEEEEEcCCCC
Confidence            5666777766  677899999999999999999                  678888889888   89999999999999


Q ss_pred             EEEEeeCCCcEEEEeCCCC
Q psy11529        224 KLCWTSHDGSINVRMSQQV  242 (244)
Q Consensus       224 ~l~~~~~dg~i~vwd~~~~  242 (244)
                      +|++|+.||.|++||+++.
T Consensus       324 ~l~sg~~dg~i~vwd~~~~  342 (464)
T 3v7d_B          324 RCISASMDTTIRIWDLENG  342 (464)
T ss_dssp             EEEEEETTSCEEEEETTTT
T ss_pred             EEEEEeCCCcEEEEECCCC
Confidence            9999999999999999753

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=4.5e-32  Score=219.52  Aligned_cols=203  Identities=11%  Similarity=0.112  Sum_probs=176.4

Q ss_pred             EeCCCc-eEEEEEcC--CCCeEEEecCCCeEEEeeeccCCC------cceeeeeeccCCCceEEEEeCCCCCeEEEEeCC
Q psy11529          6 SFGINP-VTTHAWNN--TRQQLAFTPNNQEVHLYQYEKAAN------DWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSAD   76 (244)
Q Consensus         6 ~~~~~~-v~~~~~~~--~~~~l~~~~~d~~v~v~~~~~~~~------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d   76 (244)
                      ..|.+. |++++|+|  ++++|++++.||.|++|++..  +      .......+..|...|.+++|+|++++|++++.+
T Consensus        60 ~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~  137 (615)
T 1pgu_A           60 TGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTF--DKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEG  137 (615)
T ss_dssp             CTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEE--EGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECC
T ss_pred             ecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCC--CcccccccccccchhhcccccEEEEEEeCCCCEEEEeccC
Confidence            346788 99999999  999999999999999999964  2      236777888899999999999999999999987


Q ss_pred             ----ccEEEEeeeCCCCCceeeEEEeccCcceEEEEECCCCC-eEEEeeCCCeEEEEEeecCCCceEEEeeecCCCC---
Q psy11529         77 ----RNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLEN-KFAAGSGARLISVCYFESENDWWVAKHIKKPIKS---  148 (244)
Q Consensus        77 ----~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~---  148 (244)
                          +.|.+||  .  ++  ....+..|...+.+++|+|+++ .+++++.|+.|++||++..+.    ......|..   
T Consensus       138 ~~~~~~v~~~d--~--~~--~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~----~~~~~~~~~~~~  207 (615)
T 1pgu_A          138 RDNFGVFISWD--S--GN--SLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKF----SASDRTHHKQGS  207 (615)
T ss_dssp             SSCSEEEEETT--T--CC--EEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEE----EEEECSSSCTTC
T ss_pred             CCCccEEEEEE--C--CC--cceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcce----eeeecccCCCCc
Confidence                7888988  3  22  2445567899999999999998 799999999999999887653    455566777   


Q ss_pred             ceeEEEecCC-CCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEe-c---CCCCCCCCeEEEEEecCCC
Q psy11529        149 TITCLDWHPN-NHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVEL-N---NSSSGGGWIHSVAFSKDGN  223 (244)
Q Consensus       149 ~v~~~~~~p~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~v~~~~~s~~~~  223 (244)
                      .|.+++|+|+ +++|++++.||.|++||+                  ..++.+..+ .   .|   ...|.+++|+ +++
T Consensus       208 ~v~~~~~~~~~~~~l~~~~~dg~i~vwd~------------------~~~~~~~~~~~~~~~~---~~~v~~~~~~-~~~  265 (615)
T 1pgu_A          208 FVRDVEFSPDSGEFVITVGSDRKISCFDG------------------KSGEFLKYIEDDQEPV---QGGIFALSWL-DSQ  265 (615)
T ss_dssp             CEEEEEECSTTCCEEEEEETTCCEEEEET------------------TTCCEEEECCBTTBCC---CSCEEEEEES-SSS
T ss_pred             eEEEEEECCCCCCEEEEEeCCCeEEEEEC------------------CCCCEeEEeccccccc---CCceEEEEEc-CCC
Confidence            8999999999 999999999999999999                  667788888 5   67   8999999999 999


Q ss_pred             EEEEeeCCCcEEEEeCCCC
Q psy11529        224 KLCWTSHDGSINVRMSQQV  242 (244)
Q Consensus       224 ~l~~~~~dg~i~vwd~~~~  242 (244)
                      +|++++.|+.|++||+++.
T Consensus       266 ~l~~~~~d~~i~~wd~~~~  284 (615)
T 1pgu_A          266 KFATVGADATIRVWDVTTS  284 (615)
T ss_dssp             EEEEEETTSEEEEEETTTT
T ss_pred             EEEEEcCCCcEEEEECCCC
Confidence            9999999999999999753

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=100.00  E-value=5.1e-32  Score=205.75  Aligned_cols=203  Identities=15%  Similarity=0.170  Sum_probs=155.8

Q ss_pred             EeCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeE-EEEeCCccEEEEee
Q psy11529          6 SFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRI-VTCSADRNAYVWTQ   84 (244)
Q Consensus         6 ~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~iwd~   84 (244)
                      ..|.++|.+++|+|||++|++|+.+ .++||++..  .  .......  ...+..+++.++++.+ ++++.|++|++|| 
T Consensus        16 ~~h~~~V~~v~fs~dg~~la~g~~~-~~~iw~~~~--~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd-   87 (355)
T 3vu4_A           16 NHVSNPVTDYEFNQDQSCLILSTLK-SFEIYNVHP--V--AHIMSQE--MRHLSKVRMLHRTNYVAFVTGVKEVVHIWD-   87 (355)
T ss_dssp             ---CCCCCEEEECTTSSEEEEECSS-EEEEEEETT--E--EEEEEEE--CSCCCEEEECTTSSEEEEECSSTTEEEEEE-
T ss_pred             ccCCCceEEEEECCCCCEEEEEcCC-EEEEEecCC--c--ceeeeee--cCCeEEEEEcCCCCEEEEEECCccEEEEEE-
Confidence            4578999999999999999999866 478999876  3  3333322  2357788899888877 4677789999999 


Q ss_pred             eCCCCCceeeEEEeccCcceEEEEECCCC-----------------------------------CeEEE--eeCCCeEEE
Q psy11529         85 NNDDKKWKPTLVLLRINRAATCVKWSPLE-----------------------------------NKFAA--GSGARLISV  127 (244)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-----------------------------------~~l~~--~~~d~~i~i  127 (244)
                       ..+++....+   .+...+.+++|+++.                                   .++++  ++.+|.|++
T Consensus        88 -~~~~~~~~~~---~~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~~~la~~sg~~~g~v~i  163 (355)
T 3vu4_A           88 -DVKKQDVSRI---KVDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIRFGGVCEFSNGLLVYSNEFNLGQIHI  163 (355)
T ss_dssp             -TTTTEEEEEE---ECSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEEEEEEEEEETTEEEEEESSCTTCEEE
T ss_pred             -CCCCcEEEEE---ECCCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEeccCCceEEEEccEEEEeCCCcCcEEEE
Confidence             7777644433   356678888887652                                   23333  466788888


Q ss_pred             EEeecCCCce-----------EE-EeeecCCCCceeEEEecCCCCEEEEeeCCCe-EEEEEeeecccccCCCCCCCCccc
Q psy11529        128 CYFESENDWW-----------VA-KHIKKPIKSTITCLDWHPNNHLLGCGSTDFK-VRVFSAYIKDIESAPQSTNWGSKS  194 (244)
Q Consensus       128 ~d~~~~~~~~-----------~~-~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~-i~i~d~~~~~~~~~~~~~~~~~~~  194 (244)
                      ||+++.....           .. ......|...|++++|+|+|++|++|+.|++ |++||+                  
T Consensus       164 wd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~------------------  225 (355)
T 3vu4_A          164 TKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKT------------------  225 (355)
T ss_dssp             EECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEET------------------
T ss_pred             EECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEEC------------------
Confidence            8877653100           01 3456788999999999999999999999998 999999                  


Q ss_pred             cccceeEEec-C-CCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCC
Q psy11529        195 TLGNCLVELN-N-SSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQ  241 (244)
Q Consensus       195 ~~~~~~~~~~-~-~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~  241 (244)
                      .+++++..+. + |   ...|.+++|+|+|++|++++.|++|++||+++
T Consensus       226 ~~~~~~~~~~~g~h---~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~  271 (355)
T 3vu4_A          226 EDGVLVREFRRGLD---RADVVDMKWSTDGSKLAVVSDKWTLHVFEIFN  271 (355)
T ss_dssp             TTCCEEEEEECTTC---CSCEEEEEECTTSCEEEEEETTCEEEEEESSC
T ss_pred             CCCcEEEEEEcCCC---CCcEEEEEECCCCCEEEEEECCCEEEEEEccC
Confidence            6788888888 4 6   89999999999999999999999999999975

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.5e-32  Score=214.20  Aligned_cols=198  Identities=13%  Similarity=0.096  Sum_probs=152.0

Q ss_pred             CCceEEEEEcCCCCeEEEecCCCeEEEeeeccCC---------------------------CcceeeeeeccCCCceEEE
Q psy11529          9 INPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAA---------------------------NDWSQLDVLDGHDLKVTGI   61 (244)
Q Consensus         9 ~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~---------------------------~~~~~~~~~~~~~~~v~~~   61 (244)
                      ...|.+++|+|||+++|+++.|++|+  +.....                           .+......+ .|...|.++
T Consensus        15 ~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~l~gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~~-~~~~~V~~v   91 (588)
T 2j04_A           15 EDWKNNLTWARDGTLYLTTFPDISIG--QPKYAKDINCNSKNLFHVKEFPLEFENKLDFELAQQNGLLNS-QPVCYPRVC   91 (588)
T ss_dssp             SSSSCCEEECTTSCEEEECSSSEEEE--EECCCSCCSSBGGGTEEEEEECCCCCCTTTTSCCCSSCSSTT-SCSCCEEEE
T ss_pred             hccEEEEEECCCCCEEEEEcCCceee--cccccceecCCCccEEEEEECCCCCcceEEEEeCCCceEeec-CCCCcEEEE
Confidence            57899999999999999999999995  322100                           000111122 457889999


Q ss_pred             EeCCCCCeEEEEeCCccEEEEeeeCCCCCceeeEEEeccCc-----ceEEEEECCCCCeEEEeeCCCeEEEEEeecCCC-
Q psy11529         62 DWAPNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRINR-----AATCVKWSPLENKFAAGSGARLISVCYFESEND-  135 (244)
Q Consensus        62 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~-  135 (244)
                      +|||+|++||+++.||.|++||  .+.    ....+. |..     .+.+++|||+|++||+|+.||+|++||+..+.. 
T Consensus        92 awSPdG~~LAs~s~dg~V~iwd--~~~----~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~  164 (588)
T 2j04_A           92 KPSPIDDWMAVLSNNGNVSVFK--DNK----MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSEN  164 (588)
T ss_dssp             EECSSSSCEEEEETTSCEEEEE--TTE----EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTT
T ss_pred             EECCCCCEEEEEeCCCcEEEEe--CCc----eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccc
Confidence            9999999999999999999999  433    122223 443     599999999999999999999999999988742 


Q ss_pred             --ceEEEee----ecCCCCceeEEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccc---eeEEec-C
Q psy11529        136 --WWVAKHI----KKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGN---CLVELN-N  205 (244)
Q Consensus       136 --~~~~~~~----~~~~~~~v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~  205 (244)
                        .+.....    ..+|...|.+++|+|+|  +++++.|+.|++||+.                  ...   ...++. +
T Consensus       165 ~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~------------------~~~~~~~~~tL~~~  224 (588)
T 2j04_A          165 TPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVS------------------ASSHQPVSRMIQNA  224 (588)
T ss_dssp             CCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCC------------------SSSSCCCEEEEECC
T ss_pred             cccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECC------------------CCccccceeeeccc
Confidence              0011222    25677899999999999  8888999999999983                  333   234553 5


Q ss_pred             CCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCCC
Q psy11529        206 SSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQV  242 (244)
Q Consensus       206 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~  242 (244)
                      |   ...|.+++|+  |+.|++++ +++|++||+.+.
T Consensus       225 h---~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~  255 (588)
T 2j04_A          225 S---RRKITDLKIV--DYKVVLTC-PGYVHKIDLKNY  255 (588)
T ss_dssp             C---SSCCCCEEEE--TTEEEEEC-SSEEEEEETTTT
T ss_pred             c---cCcEEEEEEE--CCEEEEEe-CCeEEEEECCCC
Confidence            6   7899999999  68898887 699999998753

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.2e-32  Score=208.37  Aligned_cols=201  Identities=9%  Similarity=-0.045  Sum_probs=151.2

Q ss_pred             CceEEEEEcCCCCeEEEecCCCeEEEeeeccCC-----Ccceeeeee-ccCCCceEEEEeCC--CCCeEEEEeCCccEEE
Q psy11529         10 NPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAA-----NDWSQLDVL-DGHDLKVTGIDWAP--NTNRIVTCSADRNAYV   81 (244)
Q Consensus        10 ~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~-----~~~~~~~~~-~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~i   81 (244)
                      ..|.++.|+|+   +++++.|+.|++|+.....     ...+.+..+ .+|...|.+++|+|  +++++++++.|++|++
T Consensus        77 ~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~  153 (343)
T 3lrv_A           77 PNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGF  153 (343)
T ss_dssp             ECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEE
T ss_pred             CCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEE
Confidence            55667778877   8899999999999765300     000223333 25778999999999  9999999999999999


Q ss_pred             EeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecC-CCCceeEEEecCCCC
Q psy11529         82 WTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKP-IKSTITCLDWHPNNH  160 (244)
Q Consensus        82 wd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~-~~~~v~~~~~~p~~~  160 (244)
                      ||  +++++..... ...+...+.+++|+|++.+|++|+.|+.|++||+++++.   ....... |...|++++|+|++.
T Consensus       154 wd--~~~~~~~~~~-~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~---~~~~~~~~h~~~v~~l~fs~~g~  227 (343)
T 3lrv_A          154 QS--YEDDSQYIVH-SAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQ---ASSRFPVDEEAKIKEVKFADNGY  227 (343)
T ss_dssp             EE--SSSSCEEEEE-CCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTS---CCEECCCCTTSCEEEEEECTTSS
T ss_pred             EE--CCCCcEEEEE-ecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCC---CccEEeccCCCCEEEEEEeCCCC
Confidence            99  7777642221 134556799999999999999999999999999999876   2123344 889999999999999


Q ss_pred             EEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEec---CCCCCCCCe--EEEEEecCCCEEEEeeC-CCcE
Q psy11529        161 LLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELN---NSSSGGGWI--HSVAFSKDGNKLCWTSH-DGSI  234 (244)
Q Consensus       161 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~v--~~~~~s~~~~~l~~~~~-dg~i  234 (244)
                      +|++++ ++.|++||++.                  .+....+.   .|   ...+  .+++|+|+|++|++++. |+.|
T Consensus       228 ~l~s~~-~~~v~iwd~~~------------------~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~l~~~s~~d~~i  285 (343)
T 3lrv_A          228 WMVVEC-DQTVVCFDLRK------------------DVGTLAYPTYTIP---EFKTGTVTYDIDDSGKNMIAYSNESNSL  285 (343)
T ss_dssp             EEEEEE-SSBEEEEETTS------------------STTCBSSCCCBC--------CCEEEEECTTSSEEEEEETTTTEE
T ss_pred             EEEEEe-CCeEEEEEcCC------------------CCcceeecccccc---cccccceEEEECCCCCEEEEecCCCCcE
Confidence            999999 55999999953                  32222222   12   2333  46999999999999998 9999


Q ss_pred             EEEeCCC
Q psy11529        235 NVRMSQQ  241 (244)
Q Consensus       235 ~vwd~~~  241 (244)
                      ++|++++
T Consensus       286 ~v~~~~~  292 (343)
T 3lrv_A          286 TIYKFDK  292 (343)
T ss_dssp             EEEEECT
T ss_pred             EEEEEcc
Confidence            9998854

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.2e-32  Score=208.37  Aligned_cols=192  Identities=10%  Similarity=0.035  Sum_probs=153.4

Q ss_pred             EEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeee-------CCC
Q psy11529         16 AWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQN-------NDD   88 (244)
Q Consensus        16 ~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~-------~~~   88 (244)
                      .+.+++++|++|+.||.|++||+.+  +  +.+..+.  ...|.++.|+|+   +++++.|++|++|+.+       ..+
T Consensus        43 ~~~~d~~~l~sg~~Dg~v~iwd~~~--~--~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~  113 (343)
T 3lrv_A           43 SMYYDKWVCMCRCEDGALHFTQLKD--S--KTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKT  113 (343)
T ss_dssp             SSSEEEEEEEEEEETTEEEEEEESS--S--SCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTT
T ss_pred             hhcCCCCEEEEECCCCcEEEEECCC--C--cEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCC
Confidence            3446788999999999999999987  4  4444554  467888889987   9999999999999721       123


Q ss_pred             CCceeeEEEeccCcceEEEEECC--CCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEee
Q psy11529         89 KKWKPTLVLLRINRAATCVKWSP--LENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGS  166 (244)
Q Consensus        89 ~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~  166 (244)
                      ++..... ...|...|.+++|+|  +++++++++.|+.|++||+++++.   .......+...+.+++|+|++++|++|+
T Consensus       114 ~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~---~~~~~~~~~~~i~~~~~~pdg~~lasg~  189 (343)
T 3lrv_A          114 NKVLREI-EVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQ---YIVHSAKSDVEYSSGVLHKDSLLLALYS  189 (343)
T ss_dssp             CCEEEEE-ECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCE---EEEECCCSSCCCCEEEECTTSCEEEEEC
T ss_pred             cceeEEe-ecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcE---EEEEecCCCCceEEEEECCCCCEEEEEc
Confidence            3222222 235667899999999  999999999999999999998864   2223344556799999999999999999


Q ss_pred             CCCeEEEEEeeecccccCCCCCCCCcccccccee-EEecC-CCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCCC
Q psy11529        167 TDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCL-VELNN-SSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQV  242 (244)
Q Consensus       167 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~  242 (244)
                      .||.|++||+                  ..++.. ..+.. |   ..+|++++|+|+|.+|++++ |+.|++||+++.
T Consensus       190 ~dg~i~iwd~------------------~~~~~~~~~~~~~h---~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~  245 (343)
T 3lrv_A          190 PDGILDVYNL------------------SSPDQASSRFPVDE---EAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKD  245 (343)
T ss_dssp             TTSCEEEEES------------------SCTTSCCEECCCCT---TSCEEEEEECTTSSEEEEEE-SSBEEEEETTSS
T ss_pred             CCCEEEEEEC------------------CCCCCCccEEeccC---CCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCC
Confidence            9999999999                  455555 66777 7   89999999999999999999 559999999875

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=1e-31  Score=232.93  Aligned_cols=206  Identities=19%  Similarity=0.269  Sum_probs=177.9

Q ss_pred             eCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCC--CCCeEEEEeCCccEEEEee
Q psy11529          7 FGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAP--NTNRIVTCSADRNAYVWTQ   84 (244)
Q Consensus         7 ~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~   84 (244)
                      .|.+.|.+++|+|++++|++++.|+.|+|||+.+  +  +.+..+.+|...|.+++|+|  ++.++++++.|+.|++|| 
T Consensus       655 ~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~--~--~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd-  729 (1249)
T 3sfz_A          655 AHEDEVLCCAFSSDDSYIATCSADKKVKIWDSAT--G--KLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWD-  729 (1249)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT--C--CEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEE-
T ss_pred             cCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCC--C--ceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEE-
Confidence            4689999999999999999999999999999987  5  77888999999999999999  556899999999999999 


Q ss_pred             eCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEE-------------------------
Q psy11529         85 NNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVA-------------------------  139 (244)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~-------------------------  139 (244)
                       ..+++.  ...+.+|...|.+++|+|+++++++++.|+.|++||+++.......                         
T Consensus       730 -~~~~~~--~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  806 (1249)
T 3sfz_A          730 -LNQKEC--RNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSW  806 (1249)
T ss_dssp             -TTSSSE--EEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCB
T ss_pred             -CCCcch--hheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEE
Confidence             777764  3445689999999999999999999999999999998766431111                         


Q ss_pred             --------------------------EeeecCCCCceeEEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCcc
Q psy11529        140 --------------------------KHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSK  193 (244)
Q Consensus       140 --------------------------~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  193 (244)
                                                ......|...+.+++|+|+++++++++.||.|++||+                 
T Consensus       807 s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~-----------------  869 (1249)
T 3sfz_A          807 SADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNI-----------------  869 (1249)
T ss_dssp             CTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEET-----------------
T ss_pred             CCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEc-----------------
Confidence                                      1112256678888999999999999999999999998                 


Q ss_pred             ccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCC
Q psy11529        194 STLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQ  241 (244)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~  241 (244)
                       ..+..+..+.+|   ...|.+++|+|+|++|++++.||.|++||+.+
T Consensus       870 -~~~~~~~~~~~h---~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~  913 (1249)
T 3sfz_A          870 -DSRLKVADCRGH---LSWVHGVMFSPDGSSFLTASDDQTIRVWETKK  913 (1249)
T ss_dssp             -TTTEEEEEECCC---SSCEEEEEECTTSSEEEEEETTSCEEEEEHHH
T ss_pred             -CCCceeeecCCC---ccceEEEEECCCCCEEEEEeCCCeEEEEEccc
Confidence             667888889998   99999999999999999999999999999753

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1e-31  Score=200.35  Aligned_cols=195  Identities=17%  Similarity=0.185  Sum_probs=168.6

Q ss_pred             EeCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCC-CCCeEEEEeCCccEEEEee
Q psy11529          6 SFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAP-NTNRIVTCSADRNAYVWTQ   84 (244)
Q Consensus         6 ~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~   84 (244)
                      ..|..+|.+++|  +++++++++.|+.|++|| ..     .....+..|...+.+++|+| +++++++++.|+.|++|| 
T Consensus       101 ~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d-~~-----~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d-  171 (313)
T 3odt_A          101 IGHQGNVCSLSF--QDGVVISGSWDKTAKVWK-EG-----SLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQ-  171 (313)
T ss_dssp             CCCSSCEEEEEE--ETTEEEEEETTSEEEEEE-TT-----EEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEE-
T ss_pred             hhcccCEEEEEe--cCCEEEEEeCCCCEEEEc-CC-----cEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEe-
Confidence            346889999999  577999999999999999 33     67778888999999999998 899999999999999999 


Q ss_pred             eCCCCCceeeEEEec-cCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEE
Q psy11529         85 NNDDKKWKPTLVLLR-INRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLG  163 (244)
Q Consensus        85 ~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~  163 (244)
                       ...  .  ...... +...+.+++|+|++. +++++.|+.|++||+++.+.    ......|...+.+++|+|++ .|+
T Consensus       172 -~~~--~--~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~----~~~~~~~~~~i~~~~~~~~~-~l~  240 (313)
T 3odt_A          172 -NDK--V--IKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDV----LRTYEGHESFVYCIKLLPNG-DIV  240 (313)
T ss_dssp             -TTE--E--EEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCE----EEEEECCSSCEEEEEECTTS-CEE
T ss_pred             -cCc--e--EEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhh----hhhhhcCCceEEEEEEecCC-CEE
Confidence             332  1  223334 788999999999988 99999999999999988764    44556788999999999999 688


Q ss_pred             EeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCCC
Q psy11529        164 CGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQV  242 (244)
Q Consensus       164 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~  242 (244)
                      +++.||.|++||+                  ..++.+..+..|   ...|.+++|+|+++ +++++.||.|++||+++.
T Consensus       241 ~~~~dg~v~iwd~------------------~~~~~~~~~~~~---~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~  297 (313)
T 3odt_A          241 SCGEDRTVRIWSK------------------ENGSLKQVITLP---AISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKS  297 (313)
T ss_dssp             EEETTSEEEEECT------------------TTCCEEEEEECS---SSCEEEEEECTTSC-EEEEETTSCEEEEESCGG
T ss_pred             EEecCCEEEEEEC------------------CCCceeEEEecc---CceEEEEEEccCCC-EEEEeCCCcEEEEeCCCC
Confidence            9999999999999                  678888888888   88999999999998 567889999999999863

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=100.00  E-value=1.6e-32  Score=211.24  Aligned_cols=202  Identities=10%  Similarity=0.034  Sum_probs=149.8

Q ss_pred             eCCCceEEEEEcC--------CCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCC-CeEEEEeCCc
Q psy11529          7 FGINPVTTHAWNN--------TRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNT-NRIVTCSADR   77 (244)
Q Consensus         7 ~~~~~v~~~~~~~--------~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~   77 (244)
                      -|.+.|.+++|+|        |+++||+++.|++|+|||+..  +  .+...+..|...|.+++|+|++ .+|++++.|+
T Consensus       134 gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~--~--~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~  209 (393)
T 4gq1_A          134 GHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTD--E--GPILAGYPLSSPGISVQFRPSNPNQLIVGERNG  209 (393)
T ss_dssp             SCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEET--T--EEEEEEEECSSCEEEEEEETTEEEEEEEEETTS
T ss_pred             CCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCC--C--ceeeeecCCCCCcEEEEECCCCCceEEecCCCC
Confidence            3689999999998        889999999999999999976  3  5666777799999999999977 4799999999


Q ss_pred             cEEEEeeeCCCCCceee-----------------------EEEeccCcceEEEEEC-CCCCeEEEeeCCCeEEEEEeecC
Q psy11529         78 NAYVWTQNNDDKKWKPT-----------------------LVLLRINRAATCVKWS-PLENKFAAGSGARLISVCYFESE  133 (244)
Q Consensus        78 ~i~iwd~~~~~~~~~~~-----------------------~~~~~~~~~v~~~~~~-~~~~~l~~~~~d~~i~i~d~~~~  133 (244)
                      +|++||  +.+++....                       ....+|...+.++.|+ |+++.+++++.|+++++||+...
T Consensus       210 ~v~~wd--~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~  287 (393)
T 4gq1_A          210 NIRIFD--WTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFAN  287 (393)
T ss_dssp             EEEEEE--TTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC---
T ss_pred             EEEEEE--CCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccC
Confidence            999999  555542211                       1123466778889986 79999999999999999999776


Q ss_pred             CCceEEEeeecCCC------------------CceeEEEecC--CCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCcc
Q psy11529        134 NDWWVAKHIKKPIK------------------STITCLDWHP--NNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSK  193 (244)
Q Consensus       134 ~~~~~~~~~~~~~~------------------~~v~~~~~~p--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  193 (244)
                      ....    ....+.                  .......|+|  ++.++++|+.||.|++||+                 
T Consensus       288 ~~~~----~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~-----------------  346 (393)
T 4gq1_A          288 NDYN----EISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINT-----------------  346 (393)
T ss_dssp             --------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEET-----------------
T ss_pred             CCCc----eEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEEC-----------------
Confidence            5311    111111                  1222334444  3446778889999999998                 


Q ss_pred             ccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCC
Q psy11529        194 STLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQ  240 (244)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~  240 (244)
                       ..++....+..|   ..+|.+++|+|||++||+++.+| +.+|.+.
T Consensus       347 -~~~~~~~~~~~~---~~~V~svafspdG~~LA~as~~G-v~lvrL~  388 (393)
T 4gq1_A          347 -YEKDSNSIPIQL---GMPIVDFCWHQDGSHLAIATEGS-VLLTRLM  388 (393)
T ss_dssp             -TCTTCCEEEEEC---SSCEEEEEECTTSSEEEEEESSE-EEEEEEG
T ss_pred             -CCCcEEEEecCC---CCcEEEEEEcCCCCEEEEEeCCC-eEEEEEe
Confidence             566777777777   88999999999999999998766 6566554

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=5.5e-30  Score=199.64  Aligned_cols=194  Identities=15%  Similarity=0.230  Sum_probs=158.7

Q ss_pred             CCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCC
Q psy11529          8 GINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNND   87 (244)
Q Consensus         8 ~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~   87 (244)
                      +...|.++++  ++++|++|+.||.|++||+.+  +  +....+.+|...|.+++|  ++++|++|+.||.|++||  ..
T Consensus       132 ~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~--~--~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd--~~  201 (435)
T 1p22_A          132 TSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNT--L--ECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWD--VN  201 (435)
T ss_dssp             SCCCEEEEEC--CSSEEEEEESSSCEEEEESSS--C--CEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEE--SS
T ss_pred             CCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCC--C--eEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEE--CC
Confidence            3567888877  789999999999999999977  4  677889999999999999  688999999999999999  77


Q ss_pred             CCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEeeC
Q psy11529         88 DKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGST  167 (244)
Q Consensus        88 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~  167 (244)
                      +++.  ...+..|...|.+++|++  ..+++++.|+.|++||+++.... ........|...|.+++|  +++++++|+.
T Consensus       202 ~~~~--~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~-~~~~~~~~~~~~v~~~~~--~~~~l~s~~~  274 (435)
T 1p22_A          202 TGEM--LNTLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDI-TLRRVLVGHRAAVNVVDF--DDKYIVSASG  274 (435)
T ss_dssp             SCCE--EEEECCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCC-EEEEEECCCSSCEEEEEE--ETTEEEEEET
T ss_pred             CCcE--EEEEcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCc-eeeeEecCCCCcEEEEEe--CCCEEEEEeC
Confidence            7764  344567889999999975  59999999999999999987652 223556778899999999  6789999999


Q ss_pred             CCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCC
Q psy11529        168 DFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQ  241 (244)
Q Consensus       168 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~  241 (244)
                      ||.|++||+                  .+++.+..+..|   ...|.+++|  ++++|++|+.||.|++||+++
T Consensus       275 dg~i~vwd~------------------~~~~~~~~~~~~---~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~  325 (435)
T 1p22_A          275 DRTIKVWNT------------------STCEFVRTLNGH---KRGIACLQY--RDRLVVSGSSDNTIRLWDIEC  325 (435)
T ss_dssp             TSEEEEEET------------------TTCCEEEEEECC---SSCEEEEEE--ETTEEEEEETTSCEEEEETTT
T ss_pred             CCeEEEEEC------------------CcCcEEEEEcCC---CCcEEEEEe--CCCEEEEEeCCCeEEEEECCC
Confidence            999999999                  456666666666   666777766  355777777777777777664

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=2.3e-30  Score=201.80  Aligned_cols=195  Identities=22%  Similarity=0.312  Sum_probs=169.2

Q ss_pred             EeCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeee
Q psy11529          6 SFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQN   85 (244)
Q Consensus         6 ~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~   85 (244)
                      ..|.++|.+++|  ++++|++|+.||.|++||+.+  +  +....+.+|...|.+++|++  ..+++++.|+.|++||  
T Consensus       170 ~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~--~--~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd--  239 (435)
T 1p22_A          170 TGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNT--G--EMLNTLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWD--  239 (435)
T ss_dssp             CCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSS--C--CEEEEECCCCSCEEEEECCT--TEEEEEETTSCEEEEE--
T ss_pred             cCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCC--C--cEEEEEcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEe--
Confidence            346889999998  788999999999999999987  5  67888899999999999974  5899999999999999  


Q ss_pred             CCCCCcee-eEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEE
Q psy11529         86 NDDKKWKP-TLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGC  164 (244)
Q Consensus        86 ~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~  164 (244)
                      ..++.... .....+|...+.+++|  +++++++++.|+.|++||+++.+.    ......|...+.++.|+  ++++++
T Consensus       240 ~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~----~~~~~~~~~~v~~~~~~--~~~l~~  311 (435)
T 1p22_A          240 MASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEF----VRTLNGHKRGIACLQYR--DRLVVS  311 (435)
T ss_dssp             CSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCE----EEEEECCSSCEEEEEEE--TTEEEE
T ss_pred             CCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcE----EEEEcCCCCcEEEEEeC--CCEEEE
Confidence            66655332 2445678899999999  778999999999999999998864    44556788899999994  679999


Q ss_pred             eeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCC
Q psy11529        165 GSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQ  241 (244)
Q Consensus       165 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~  241 (244)
                      |+.||.|++||+                  .+++++..+.+|   ...|.+++|  ++++|++|+.||.|++||+++
T Consensus       312 g~~dg~i~iwd~------------------~~~~~~~~~~~h---~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~  365 (435)
T 1p22_A          312 GSSDNTIRLWDI------------------ECGACLRVLEGH---EELVRCIRF--DNKRIVSGAYDGKIKVWDLVA  365 (435)
T ss_dssp             EETTSCEEEEET------------------TTCCEEEEECCC---SSCEEEEEC--CSSEEEEEETTSCEEEEEHHH
T ss_pred             EeCCCeEEEEEC------------------CCCCEEEEEeCC---cCcEEEEEe--cCCEEEEEeCCCcEEEEECCC
Confidence            999999999999                  678888999998   899999998  788999999999999999854

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=7.5e-30  Score=190.69  Aligned_cols=204  Identities=16%  Similarity=0.321  Sum_probs=159.1

Q ss_pred             eEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCCCCCc
Q psy11529         12 VTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKW   91 (244)
Q Consensus        12 v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~   91 (244)
                      .++|+||+++ +||+|. |++|+|||+.+  ++......+.+|...|++++|+|++++|++|+.|++|++||  .++++.
T Consensus        28 ~~~l~WS~~~-~lAvg~-D~tV~iWd~~t--g~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~--~~~~~~  101 (318)
T 4ggc_A           28 LNLVDWSSGN-VLAVAL-DNSVYLWSASS--GDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWD--VQQQKR  101 (318)
T ss_dssp             CBCEEECTTS-EEEEEE-TTEEEEEETTT--CCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEE--TTTTEE
T ss_pred             ceEEEECCCC-EEEEEe-CCEEEEEECCC--CCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEee--cCCcee
Confidence            4679999986 777764 89999999987  53333444567888999999999999999999999999999  565543


Q ss_pred             eee---------------------------------------EEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeec
Q psy11529         92 KPT---------------------------------------LVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFES  132 (244)
Q Consensus        92 ~~~---------------------------------------~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~  132 (244)
                      ...                                       ..+..|...+..+.++++++++++++.|+.|++||+++
T Consensus       102 ~~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~  181 (318)
T 4ggc_A          102 LRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAP  181 (318)
T ss_dssp             EEEEECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSC
T ss_pred             EEEecCccceEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCC
Confidence            211                                       12345677888999999999999999999999999988


Q ss_pred             CCCceEEEeeecCCCCceeEEEecCCCCE---EEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCC
Q psy11529        133 ENDWWVAKHIKKPIKSTITCLDWHPNNHL---LGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSG  209 (244)
Q Consensus       133 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~---l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (244)
                      ++...........+.+.+.++.++|++..   +++++.++.|++||.                  .......... +   
T Consensus       182 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~------------------~~~~~~~~~~-~---  239 (318)
T 4ggc_A          182 GEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNV------------------CSGACLSAVD-A---  239 (318)
T ss_dssp             BTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEET------------------TTCCEEEEEE-C---
T ss_pred             CcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEec------------------cccccccccc-c---
Confidence            76533344555667789999999997753   346678899999998                  4444444443 3   


Q ss_pred             CCCeEEEEEecCCCEEEEee--CCCcEEEEeCCCCC
Q psy11529        210 GGWIHSVAFSKDGNKLCWTS--HDGSINVRMSQQVL  243 (244)
Q Consensus       210 ~~~v~~~~~s~~~~~l~~~~--~dg~i~vwd~~~~~  243 (244)
                      ...+..+.|+|++..+++++  .|+.|++||+++..
T Consensus       240 ~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~  275 (318)
T 4ggc_A          240 HSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMA  275 (318)
T ss_dssp             SSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCC
T ss_pred             eeeeeeeeecccccceEEEEEcCCCEEEEEECCCCc
Confidence            67899999999999877654  79999999998653

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.98  E-value=8.3e-30  Score=197.79  Aligned_cols=202  Identities=15%  Similarity=0.206  Sum_probs=163.7

Q ss_pred             ceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCCCCC
Q psy11529         11 PVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKK   90 (244)
Q Consensus        11 ~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~   90 (244)
                      .++.++||++ +.||+|. |++|+|||..+  ++......+.+|...|++++|+|+|++|++|+.|+.|++||  +.+++
T Consensus       107 y~~~l~wS~~-n~lAvgl-d~tV~lWd~~t--g~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd--~~~~~  180 (420)
T 4gga_A          107 YLNLVDWSSG-NVLAVAL-DNSVYLWSASS--GDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWD--VQQQK  180 (420)
T ss_dssp             TCBCEEECTT-SEEEEEE-TTEEEEEETTT--CCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEE--TTTTE
T ss_pred             cceeEEECCC-CEEEEEe-CCEEEEEECCC--CCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEE--cCCCc
Confidence            3567999975 5788775 89999999987  63344455667888999999999999999999999999999  77776


Q ss_pred             ceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEeeCCCe
Q psy11529         91 WKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFK  170 (244)
Q Consensus        91 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~  170 (244)
                      .  .....+|...+.+++++  +..|++++.|+.+++||......   .......|...+..+.|+|+++++++++.|+.
T Consensus       181 ~--~~~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~---~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~  253 (420)
T 4gga_A          181 R--LRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEH---HVATLSGHSQEVCGLRWAPDGRHLASGGNDNL  253 (420)
T ss_dssp             E--EEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSC---EEEEEECCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             E--EEEEeCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccce---eeEEecccccceeeeeecCCCCeeeeeecccc
Confidence            4  34456788899988875  57999999999999999988765   44556778899999999999999999999999


Q ss_pred             EEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCC-EEEE--eeCCCcEEEEeCCCC
Q psy11529        171 VRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGN-KLCW--TSHDGSINVRMSQQV  242 (244)
Q Consensus       171 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~--~~~dg~i~vwd~~~~  242 (244)
                      +++|+....+              .....+.....|   ...|.+++|+|++. ++++  |+.|++|++||+++.
T Consensus       254 v~i~~~~~~~--------------~~~~~~~~~~~~---~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~  311 (420)
T 4gga_A          254 VNVWPSAPGE--------------GGWVPLQTFTQH---QGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG  311 (420)
T ss_dssp             EEEEESSCCS--------------SCSCCSEEECCC---SSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTT
T ss_pred             ceEEeecccc--------------ccceeeeeeccc---CCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcc
Confidence            9999985432              112345566677   88999999999665 5554  457999999999764

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.98  E-value=1.4e-31  Score=205.94  Aligned_cols=216  Identities=13%  Similarity=0.067  Sum_probs=144.5

Q ss_pred             EcCCCCeEEEecCCCeEEEeeeccCCCcc---eeeeeeccCCCceEEEEeCC--------CCCeEEEEeCCccEEEEeee
Q psy11529         17 WNNTRQQLAFTPNNQEVHLYQYEKAANDW---SQLDVLDGHDLKVTGIDWAP--------NTNRIVTCSADRNAYVWTQN   85 (244)
Q Consensus        17 ~~~~~~~l~~~~~d~~v~v~~~~~~~~~~---~~~~~~~~~~~~v~~~~~~~--------~~~~l~~~~~d~~i~iwd~~   85 (244)
                      +.+++.+|++++.|++|+|||...  +..   .....+.+|.+.|++++|+|        ++++|++++.|++|+|||  
T Consensus        97 ~~~~~~~las~~~d~~v~lw~~~~--~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd--  172 (393)
T 4gq1_A           97 SPVYSLFLACVCQDNTVRLIITKN--ETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWR--  172 (393)
T ss_dssp             CCEEEEEEEEEETTSCEEEEEEET--TEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEE--
T ss_pred             cCCCCCEEEEEeCCCcEEEEECCC--CccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEE--
Confidence            344566899999999999999976  321   23455789999999999997        788999999999999999  


Q ss_pred             CCCCCceeeEEEeccCcceEEEEECCCC-CeEEEeeCCCeEEEEEeecCCCceEEE---------------------eee
Q psy11529         86 NDDKKWKPTLVLLRINRAATCVKWSPLE-NKFAAGSGARLISVCYFESENDWWVAK---------------------HIK  143 (244)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~---------------------~~~  143 (244)
                      +.++..  ......|...+.+++|+|++ .+|++++.|++|++||+++++......                     ...
T Consensus       173 ~~~~~~--~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~  250 (393)
T 4gq1_A          173 LTDEGP--ILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHS  250 (393)
T ss_dssp             EETTEE--EEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC-----
T ss_pred             CCCCce--eeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeec
Confidence            555442  44456788999999999987 479999999999999998765411111                     111


Q ss_pred             cCCCCceeEEEec-CCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCC-ccccccceeEEecCCCCCCCCeEEEEEec-
Q psy11529        144 KPIKSTITCLDWH-PNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWG-SKSTLGNCLVELNNSSSGGGWIHSVAFSK-  220 (244)
Q Consensus       144 ~~~~~~v~~~~~~-p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-  220 (244)
                      ..|...+.++.|+ |+++.|++++.|+++++||+............... ..............+   .. .....|+| 
T Consensus       251 ~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~  326 (393)
T 4gq1_A          251 SGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLF---PS-LLGACPHPR  326 (393)
T ss_dssp             -CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSS---CC-SSCCEECSS
T ss_pred             ccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEcccccccccc---Cc-ceeEEEccC
Confidence            3456778899987 79999999999999999998643322111000000 000001111122221   22 23334444 


Q ss_pred             -CCCEEEEeeCCCcEEEEeCCCC
Q psy11529        221 -DGNKLCWTSHDGSINVRMSQQV  242 (244)
Q Consensus       221 -~~~~l~~~~~dg~i~vwd~~~~  242 (244)
                       ++.++++|+.||.|++||+.+.
T Consensus       327 ~~~~~~~sgs~Dg~V~lwd~~~~  349 (393)
T 4gq1_A          327 YMDYFATAHSQHGLIQLINTYEK  349 (393)
T ss_dssp             CTTEEEEEETTTTEEEEEETTCT
T ss_pred             CCCEEEEEECCCCEEEEEECCCC
Confidence             4457778889999999999764

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.98  E-value=1.1e-30  Score=219.07  Aligned_cols=205  Identities=9%  Similarity=0.078  Sum_probs=157.8

Q ss_pred             CCceEEEEEcC----------CCCeEEEecCCCeEEEeeeccCCCcce-e------------------------------
Q psy11529          9 INPVTTHAWNN----------TRQQLAFTPNNQEVHLYQYEKAANDWS-Q------------------------------   47 (244)
Q Consensus         9 ~~~v~~~~~~~----------~~~~l~~~~~d~~v~v~~~~~~~~~~~-~------------------------------   47 (244)
                      ...|.++.+.+          +...+++++.|+.|++|++..  +... .                              
T Consensus       342 ~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~--g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~  419 (902)
T 2oaj_A          342 NVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPS--GIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLG  419 (902)
T ss_dssp             SSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTT--CCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHH
T ss_pred             CCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCC--CCcccccccCCCcccccCCCeeEEEEEEcCHHHHHH
Confidence            56788888765          344788888999999999854  2100 0                              


Q ss_pred             --------eeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCCCCCce--eeEEEe-------ccCcceEEEEEC
Q psy11529         48 --------LDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKWK--PTLVLL-------RINRAATCVKWS  110 (244)
Q Consensus        48 --------~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~--~~~~~~-------~~~~~v~~~~~~  110 (244)
                              ...+.+|...+.+++|+|++++|++|+.|++|++||  +.++...  ..+...       +|...|.+++|+
T Consensus       420 ~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd--~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafs  497 (902)
T 2oaj_A          420 ALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYD--ASHGDIQDNASFEVNLSRTLNKAKELAVDKISFA  497 (902)
T ss_dssp             HHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEE--SSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEE
T ss_pred             HHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEE--CCCccccCCceEEeechhhcCCCCCCceeEEEec
Confidence                    012345555666677789999999999999999999  6666432  112211       678899999999


Q ss_pred             CCCCeEEEeeCCCeEEEEEeecCCCc-----------------------------------------eEEEeeecCCCCc
Q psy11529        111 PLENKFAAGSGARLISVCYFESENDW-----------------------------------------WVAKHIKKPIKST  149 (244)
Q Consensus       111 ~~~~~l~~~~~d~~i~i~d~~~~~~~-----------------------------------------~~~~~~~~~~~~~  149 (244)
                      |++++||+|+.|++|++|++.+.+..                                         ..+......|.+.
T Consensus       498 pdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~  577 (902)
T 2oaj_A          498 AETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGK  577 (902)
T ss_dssp             TTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCS
T ss_pred             CCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCc
Confidence            99999999999999999999876310                                         0124455678899


Q ss_pred             eeEEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeE-----Eec-CCCCCCCCeEEEEEe----
Q psy11529        150 ITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLV-----ELN-NSSSGGGWIHSVAFS----  219 (244)
Q Consensus       150 v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~-~~~~~~~~v~~~~~s----  219 (244)
                      |++++|+||| +||+|+.|++|+|||+                  .....+.     .+. +|   ...|++++|+    
T Consensus       578 V~svafSpdG-~lAsgs~D~tv~lwd~------------------~~~~~~~~~~~~~~~~gh---~~~V~sv~Fs~~~~  635 (902)
T 2oaj_A          578 TSAINNSNIG-FVGIAYAAGSLMLIDR------------------RGPAIIYMENIREISGAQ---SACVTCIEFVIMEY  635 (902)
T ss_dssp             EEEEEECBTS-EEEEEETTSEEEEEET------------------TTTEEEEEEEGGGTCSSC---CCCEEEEEEEEEEC
T ss_pred             EEEEEecCCc-EEEEEeCCCcEEEEEC------------------CCCeEEEEeehhHhcccc---ccceEEEEEEEEec
Confidence            9999999999 9999999999999998                  3333332     232 66   8899999999    


Q ss_pred             -cCC---CEEEEeeCCCcEEEEeC
Q psy11529        220 -KDG---NKLCWTSHDGSINVRMS  239 (244)
Q Consensus       220 -~~~---~~l~~~~~dg~i~vwd~  239 (244)
                       |||   ++|++|+.|++|++||+
T Consensus       636 ~~Dg~~~~~l~sgs~D~tv~~wd~  659 (902)
T 2oaj_A          636 GDDGYSSILMVCGTDMGEVITYKI  659 (902)
T ss_dssp             TTSSSEEEEEEEEETTSEEEEEEE
T ss_pred             CCCCCcceEEEEEecCCcEEEEEE
Confidence             886   89999999999999998

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.98  E-value=1.7e-29  Score=197.49  Aligned_cols=196  Identities=21%  Similarity=0.293  Sum_probs=162.9

Q ss_pred             eEEeCCCce-EEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEE
Q psy11529          4 VYSFGINPV-TTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVW   82 (244)
Q Consensus         4 ~~~~~~~~v-~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw   82 (244)
                      .+..|.+.| .+  +++++++|++|+.||.|++||+.+  +  +....+.+|...|.+++|+  +.++++++.|+.|++|
T Consensus       113 ~l~~h~~~v~~~--~~~~g~~l~sg~~dg~i~vwd~~~--~--~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vw  184 (445)
T 2ovr_B          113 VLKGHDDHVITC--LQFCGNRIVSGSDDNTLKVWSAVT--G--KCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVW  184 (445)
T ss_dssp             EEECSTTSCEEE--EEEETTEEEEEETTSCEEEEETTT--C--CEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEE
T ss_pred             EecccCCCcEEE--EEEcCCEEEEEECCCcEEEEECCC--C--cEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEE
Confidence            344566654 55  455689999999999999999977  5  6788899999999999998  6699999999999999


Q ss_pred             eeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEE
Q psy11529         83 TQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLL  162 (244)
Q Consensus        83 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l  162 (244)
                      |  ..+++.  ...+..|...|.+++|+  ++.+++++.|+.|++||+++++.    ......|...+.+++|  +++++
T Consensus       185 d--~~~~~~--~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~----~~~~~~~~~~v~~~~~--~~~~l  252 (445)
T 2ovr_B          185 N--AETGEC--IHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQC----LHVLMGHVAAVRCVQY--DGRRV  252 (445)
T ss_dssp             E--TTTTEE--EEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCE----EEEEECCSSCEEEEEE--CSSCE
T ss_pred             E--CCcCcE--EEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcE----EEEEcCCcccEEEEEE--CCCEE
Confidence            9  777754  34456789999999995  56899999999999999998764    4455678889999999  68899


Q ss_pred             EEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCCC
Q psy11529        163 GCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQV  242 (244)
Q Consensus       163 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~  242 (244)
                      ++++.||.|++||+                  ..++.+..+.+|   ...|.+++|  ++.++++++.||.|++||+++.
T Consensus       253 ~~~~~dg~i~iwd~------------------~~~~~~~~~~~~---~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~  309 (445)
T 2ovr_B          253 VSGAYDFMVKVWDP------------------ETETCLHTLQGH---TNRVYSLQF--DGIHVVSGSLDTSIRVWDVETG  309 (445)
T ss_dssp             EEEETTSCEEEEEG------------------GGTEEEEEECCC---SSCEEEEEE--CSSEEEEEETTSCEEEEETTTC
T ss_pred             EEEcCCCEEEEEEC------------------CCCcEeEEecCC---CCceEEEEE--CCCEEEEEeCCCeEEEEECCCC
Confidence            99999999999998                  566777777777   778888888  7778888888888888888654

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.97  E-value=3.7e-29  Score=188.71  Aligned_cols=190  Identities=16%  Similarity=0.239  Sum_probs=147.9

Q ss_pred             eeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCCCC--CceeeEEEeccCcceEEEEECC--CCCeEEEeeCCC
Q psy11529         48 LDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDK--KWKPTLVLLRINRAATCVKWSP--LENKFAAGSGAR  123 (244)
Q Consensus        48 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~  123 (244)
                      ...+.+|.+.|++++|+|++++|++++.|+.|++||  +.++  .......+..|...|.+++|+|  ++++|++++.|+
T Consensus         4 ~~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg   81 (351)
T 3f3f_A            4 QPFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFK--LDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDK   81 (351)
T ss_dssp             CCEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEE--ECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTS
T ss_pred             cccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEE--CCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCC
Confidence            345678999999999999999999999999999999  4443  2234455567999999999999  599999999999


Q ss_pred             eEEEEEeecCCCc-----eEEEeeecCCCCceeEEEecCC--CCEEEEeeCCCeEEEEEeeecccccCCC----------
Q psy11529        124 LISVCYFESENDW-----WVAKHIKKPIKSTITCLDWHPN--NHLLGCGSTDFKVRVFSAYIKDIESAPQ----------  186 (244)
Q Consensus       124 ~i~i~d~~~~~~~-----~~~~~~~~~~~~~v~~~~~~p~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~----------  186 (244)
                      .|++||++.+...     .........|...+.+++|+|+  +++|++++.||.|++||++.........          
T Consensus        82 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~  161 (351)
T 3f3f_A           82 TVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSI  161 (351)
T ss_dssp             CEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSC
T ss_pred             eEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccccccccccc
Confidence            9999999886421     1334556678899999999999  9999999999999999987544221100          


Q ss_pred             ---CCC-------C------Cc----------------cccccceeEEecCCCCCCCCeEEEEEecCC----CEEEEeeC
Q psy11529        187 ---STN-------W------GS----------------KSTLGNCLVELNNSSSGGGWIHSVAFSKDG----NKLCWTSH  230 (244)
Q Consensus       187 ---~~~-------~------~~----------------~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~----~~l~~~~~  230 (244)
                         ...       +      +.                .......+..+.+|   ...|++++|+|++    ++|++++.
T Consensus       162 ~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h---~~~i~~~~~~p~~~~~~~~l~s~~~  238 (351)
T 3f3f_A          162 PPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGH---KSLIRSISWAPSIGRWYQLIATGCK  238 (351)
T ss_dssp             CCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCC---CSCEEEEEECCCSSCSSEEEEEEET
T ss_pred             ccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCC---CcceeEEEECCCCCCcceEEEEEcC
Confidence               000       0      00                00111235666777   8999999999998    89999999


Q ss_pred             CCcEEEEeCCCC
Q psy11529        231 DGSINVRMSQQV  242 (244)
Q Consensus       231 dg~i~vwd~~~~  242 (244)
                      ||.|++||+++.
T Consensus       239 dg~i~iwd~~~~  250 (351)
T 3f3f_A          239 DGRIRIFKITEK  250 (351)
T ss_dssp             TSCEEEEEEEEC
T ss_pred             CCeEEEEeCCCC
Confidence            999999998763

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.97  E-value=1.4e-28  Score=192.31  Aligned_cols=195  Identities=16%  Similarity=0.250  Sum_probs=164.1

Q ss_pred             EeCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeee
Q psy11529          6 SFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQN   85 (244)
Q Consensus         6 ~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~   85 (244)
                      ..|..+|.+++|  +++++++|+.|+.|++||+..  +  +.+..+.+|...|.+++|  ++.++++++.|+.|++||  
T Consensus       236 ~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~--~--~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d--  305 (445)
T 2ovr_B          236 MGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPET--E--TCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWD--  305 (445)
T ss_dssp             ECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGG--T--EEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEE--
T ss_pred             cCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCC--C--cEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEE--
Confidence            346788999998  678999999999999999877  4  777888899999999999  688999999999999999  


Q ss_pred             CCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeec---CCCCceeEEEecCCCCEE
Q psy11529         86 NDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKK---PIKSTITCLDWHPNNHLL  162 (244)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~---~~~~~v~~~~~~p~~~~l  162 (244)
                      ..+++..  ..+..|...+.++.++  ++++++++.|+.|++||+++++.    .....   .|...|.+++|+  +++|
T Consensus       306 ~~~~~~~--~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~vwd~~~~~~----~~~~~~~~~~~~~v~~~~~~--~~~l  375 (445)
T 2ovr_B          306 VETGNCI--HTLTGHQSLTSGMELK--DNILVSGNADSTVKIWDIKTGQC----LQTLQGPNKHQSAVTCLQFN--KNFV  375 (445)
T ss_dssp             TTTCCEE--EEECCCCSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCE----EEEECSTTSCSSCEEEEEEC--SSEE
T ss_pred             CCCCCEE--EEEcCCcccEEEEEEe--CCEEEEEeCCCeEEEEECCCCcE----EEEEccCCCCCCCEEEEEEC--CCEE
Confidence            7777643  3446778888888874  56999999999999999988764    22233   377889999996  5799


Q ss_pred             EEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEe-----cCCCCCCCCeEEEEEecCCCEEEEeeCCCc----
Q psy11529        163 GCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVEL-----NNSSSGGGWIHSVAFSKDGNKLCWTSHDGS----  233 (244)
Q Consensus       163 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~----  233 (244)
                      ++|+.||.|++||+                  .+++.+..+     ..+   ...|.+++|+|++.++++|+.||+    
T Consensus       376 ~s~~~dg~v~iwd~------------------~~~~~~~~~~~~~~~~~---~~~v~~~~~s~~~~~la~~~~dg~~~~~  434 (445)
T 2ovr_B          376 ITSSDDGTVKLWDL------------------KTGEFIRNLVTLESGGS---GGVVWRIRASNTKLVCAVGSRNGTEETK  434 (445)
T ss_dssp             EEEETTSEEEEEET------------------TTCCEEEEEEECTTGGG---TCEEEEEEECSSEEEEEEECSSSSSCCE
T ss_pred             EEEeCCCeEEEEEC------------------CCCceeeeeeccccCCC---CceEEEEEecCCEEEEEEcccCCCCccE
Confidence            99999999999999                  667777766     345   789999999999999999999998    


Q ss_pred             EEEEeCCC
Q psy11529        234 INVRMSQQ  241 (244)
Q Consensus       234 i~vwd~~~  241 (244)
                      |.+||++.
T Consensus       435 l~v~df~~  442 (445)
T 2ovr_B          435 LLVLDFDV  442 (445)
T ss_dssp             EEEEECCC
T ss_pred             EEEEECCC
Confidence            99999875

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.97  E-value=2.7e-28  Score=185.26  Aligned_cols=220  Identities=10%  Similarity=0.046  Sum_probs=154.8

Q ss_pred             CceEEEEEcCCCCeE-EEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCC---------------------
Q psy11529         10 NPVTTHAWNNTRQQL-AFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNT---------------------   67 (244)
Q Consensus        10 ~~v~~~~~~~~~~~l-~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---------------------   67 (244)
                      ..+..+++.++++.+ ++++.|+.|++||..+  +  +.+..+. +...|.+++|+++.                     
T Consensus        59 ~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~--~--~~~~~~~-~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~  133 (355)
T 3vu4_A           59 RHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVK--K--QDVSRIK-VDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRI  133 (355)
T ss_dssp             SCCCEEEECTTSSEEEEECSSTTEEEEEETTT--T--EEEEEEE-CSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBS
T ss_pred             CCeEEEEEcCCCCEEEEEECCccEEEEEECCC--C--cEEEEEE-CCCceEEEEEcCCEEEEEEcCEEEEEECCCCceee
Confidence            457788899988877 4677789999999977  4  5666666 66788888887652                     


Q ss_pred             --------------CeEEE--EeCCccEEEEeeeCCCCCc-------------ee-eEEEeccCcceEEEEECCCCCeEE
Q psy11529         68 --------------NRIVT--CSADRNAYVWTQNNDDKKW-------------KP-TLVLLRINRAATCVKWSPLENKFA  117 (244)
Q Consensus        68 --------------~~l~~--~~~d~~i~iwd~~~~~~~~-------------~~-~~~~~~~~~~v~~~~~~~~~~~l~  117 (244)
                                    .+++.  |+.||.|++||  +.++..             .+ ...+.+|...|.+++|+|++++|+
T Consensus       134 ~~~~~~~~~~~~s~~~la~~sg~~~g~v~iwd--~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~  211 (355)
T 3vu4_A          134 TDDIRFGGVCEFSNGLLVYSNEFNLGQIHITK--LQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVA  211 (355)
T ss_dssp             SCCEEEEEEEEEETTEEEEEESSCTTCEEEEE--CCC------------------CCEEECCCSSCEEEEEECTTSSEEE
T ss_pred             EEeccCCceEEEEccEEEEeCCCcCcEEEEEE--CCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEE
Confidence                          23333  46788888888  554320             11 345678999999999999999999


Q ss_pred             EeeCCCe-EEEEEeecCCCceEEEeeecC-CCCceeEEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCC--CCcc
Q psy11529        118 AGSGARL-ISVCYFESENDWWVAKHIKKP-IKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTN--WGSK  193 (244)
Q Consensus       118 ~~~~d~~-i~i~d~~~~~~~~~~~~~~~~-~~~~v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--~~~~  193 (244)
                      +++.|++ |++||+++++.   ......+ |...|.+++|+|++++|++++.|++|++||++............  ....
T Consensus       212 s~s~d~~~v~iwd~~~~~~---~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~  288 (355)
T 3vu4_A          212 TCSQDGTIIRVFKTEDGVL---VREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKY  288 (355)
T ss_dssp             EEETTCSEEEEEETTTCCE---EEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCC
T ss_pred             EEeCCCCEEEEEECCCCcE---EEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccc
Confidence            9999998 99999998875   3333324 88999999999999999999999999999996442211000000  0000


Q ss_pred             ccccc--eeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCC
Q psy11529        194 STLGN--CLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQ  241 (244)
Q Consensus       194 ~~~~~--~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~  241 (244)
                      .....  ....+....  ......++|++|+++|++++.||.+++|++..
T Consensus       289 ~~~~~~~~~~~~~~~~--~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~  336 (355)
T 3vu4_A          289 FQSEWSLCNFKLSVDK--HVRGCKIAWISESSLVVVWPHTRMIETFKVVF  336 (355)
T ss_dssp             CCCSSCSEEEECCCCT--TCCCCEEEESSSSEEEEEETTTTEEEEEEEEE
T ss_pred             cccccceeEEEeccCC--CCCceEEEEeCCCCEEEEEeCCCeEEEEEEEc
Confidence            00000  111111110  33446799999999999999999999999764

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.97  E-value=3.2e-27  Score=182.85  Aligned_cols=197  Identities=12%  Similarity=0.139  Sum_probs=153.9

Q ss_pred             eCCCceEEEEEcCCCCeEEEecCCC---eEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEE-EEeCCcc--EE
Q psy11529          7 FGINPVTTHAWNNTRQQLAFTPNNQ---EVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIV-TCSADRN--AY   80 (244)
Q Consensus         7 ~~~~~v~~~~~~~~~~~l~~~~~d~---~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~--i~   80 (244)
                      .|...|.+++|+|||++|++++.++   .|++||+.+  +   ....+..|...+.+++|+|+|++|+ +++.++.  |+
T Consensus       176 ~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~t--g---~~~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~  250 (415)
T 2hqs_A          176 RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLAN--G---AVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLY  250 (415)
T ss_dssp             EESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTT--C---CEEEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEE
T ss_pred             CCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCC--C---cEEEeecCCCcccCEEEcCCCCEEEEEEecCCCceEE
Confidence            3578899999999999999998775   999999987  4   2335667888999999999999888 5665554  88


Q ss_pred             EEeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeC-CC--eEEEEEeecCCCceEEEeeecCCCCceeEEEecC
Q psy11529         81 VWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSG-AR--LISVCYFESENDWWVAKHIKKPIKSTITCLDWHP  157 (244)
Q Consensus        81 iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~--~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p  157 (244)
                      +||  +.+++.   ..+..+...+.+++|+|+|++|++++. ++  .|.+||+.+++.     .....+...+.+++|+|
T Consensus       251 ~~d--~~~~~~---~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~-----~~l~~~~~~~~~~~~sp  320 (415)
T 2hqs_A          251 VMD--LASGQI---RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-----QRITWEGSQNQDADVSS  320 (415)
T ss_dssp             EEE--TTTCCE---EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC-----EECCCSSSEEEEEEECT
T ss_pred             EEE--CCCCCE---EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCE-----EEEecCCCcccCeEECC
Confidence            899  777663   344567788999999999999988876 45  566667666543     22334556888999999


Q ss_pred             CCCEEEEeeCC---CeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCC--
Q psy11529        158 NNHLLGCGSTD---FKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDG--  232 (244)
Q Consensus       158 ~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg--  232 (244)
                      +|++|++++.+   +.|++||+                  ..++. ..+..+   . .+.+++|+|||++|++++.++  
T Consensus       321 dG~~l~~~~~~~g~~~i~~~d~------------------~~~~~-~~l~~~---~-~~~~~~~spdg~~l~~~s~~~~~  377 (415)
T 2hqs_A          321 DGKFMVMVSSNGGQQHIAKQDL------------------ATGGV-QVLSST---F-LDETPSLAPNGTMVIYSSSQGMG  377 (415)
T ss_dssp             TSSEEEEEEECSSCEEEEEEET------------------TTCCE-EECCCS---S-SCEEEEECTTSSEEEEEEEETTE
T ss_pred             CCCEEEEEECcCCceEEEEEEC------------------CCCCE-EEecCC---C-CcCCeEEcCCCCEEEEEEcCCCc
Confidence            99999888764   58999998                  44444 345443   3 789999999999999888777  


Q ss_pred             -cEEEEeCCC
Q psy11529        233 -SINVRMSQQ  241 (244)
Q Consensus       233 -~i~vwd~~~  241 (244)
                       .|++||+..
T Consensus       378 ~~l~~~d~~g  387 (415)
T 2hqs_A          378 SVLNLVSTDG  387 (415)
T ss_dssp             EEEEEEETTS
T ss_pred             cEEEEEECCC
Confidence             799999864

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.97  E-value=3.6e-27  Score=181.18  Aligned_cols=197  Identities=10%  Similarity=0.112  Sum_probs=156.1

Q ss_pred             CCceEEEEEcCCCCeE-EEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEE-eCCccEEEEeeeC
Q psy11529          9 INPVTTHAWNNTRQQL-AFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTC-SADRNAYVWTQNN   86 (244)
Q Consensus         9 ~~~v~~~~~~~~~~~l-~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~iwd~~~   86 (244)
                      ...+.+++|+|+++++ ++++.++.|++||+.+  +  +....+..+. .+.+++|+|++++|+.+ +.++.|++||  .
T Consensus        31 ~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~--~--~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d--~  103 (391)
T 1l0q_A           31 GSNPMGAVISPDGTKVYVANAHSNDVSIIDTAT--N--NVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVID--T  103 (391)
T ss_dssp             SSSEEEEEECTTSSEEEEEEGGGTEEEEEETTT--T--EEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEE--T
T ss_pred             CCCcceEEECCCCCEEEEECCCCCeEEEEECCC--C--eEEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEE--C
Confidence            4568999999999976 6677899999999977  4  5666666444 89999999999987654 4679999999  7


Q ss_pred             CCCCceeeEEEeccCcceEEEEECCCCCeE-EEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEE-EE
Q psy11529         87 DDKKWKPTLVLLRINRAATCVKWSPLENKF-AAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLL-GC  164 (244)
Q Consensus        87 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l-~~  164 (244)
                      .+++....   ..+...+.+++|+|+++.+ ++++.++.|++||+++++.    ...... ...+..++|+|+++++ ++
T Consensus       104 ~~~~~~~~---~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~----~~~~~~-~~~~~~~~~~~dg~~l~~~  175 (391)
T 1l0q_A          104 TSNTVAGT---VKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAV----INTVSV-GRSPKGIAVTPDGTKVYVA  175 (391)
T ss_dssp             TTTEEEEE---EECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE----EEEEEC-CSSEEEEEECTTSSEEEEE
T ss_pred             CCCeEEEE---EeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcE----EEEEec-CCCcceEEECCCCCEEEEE
Confidence            77764332   2345678999999999987 6777799999999988754    222222 3567999999999877 57


Q ss_pred             eeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEee---CCCcEEEEeCCC
Q psy11529        165 GSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTS---HDGSINVRMSQQ  241 (244)
Q Consensus       165 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~---~dg~i~vwd~~~  241 (244)
                      ++.++.|++||+                  ..++....+..    ...+.+++|+|++++|++++   .++.|++||+++
T Consensus       176 ~~~~~~v~~~d~------------------~~~~~~~~~~~----~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~  233 (391)
T 1l0q_A          176 NFDSMSISVIDT------------------VTNSVIDTVKV----EAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGT  233 (391)
T ss_dssp             ETTTTEEEEEET------------------TTTEEEEEEEC----SSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTT
T ss_pred             eCCCCEEEEEEC------------------CCCeEEEEEec----CCCccceEECCCCCEEEEEecCcCCCcEEEEECCC
Confidence            778899999998                  55666666654    56789999999999998887   689999999875


Q ss_pred             C
Q psy11529        242 V  242 (244)
Q Consensus       242 ~  242 (244)
                      .
T Consensus       234 ~  234 (391)
T 1l0q_A          234 N  234 (391)
T ss_dssp             T
T ss_pred             C
Confidence            3

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.97  E-value=3e-28  Score=185.30  Aligned_cols=127  Identities=15%  Similarity=0.196  Sum_probs=109.7

Q ss_pred             eeeeeeccCCCceEEEEeCCC---CCeEEEEeCCccEEEEeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCC
Q psy11529         46 SQLDVLDGHDLKVTGIDWAPN---TNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGA  122 (244)
Q Consensus        46 ~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  122 (244)
                      +.+..+.+|.+.|++++|+|+   |++|++++.|+.|++||  +.+........+..|...|.+++|+|++++|++++.|
T Consensus        30 ~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~--~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d  107 (368)
T 3mmy_A           30 KDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWE--VQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCD  107 (368)
T ss_dssp             CCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEE--ECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETT
T ss_pred             ceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEE--cCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCC
Confidence            677788999999999999998   69999999999999999  5653333334556799999999999999999999999


Q ss_pred             CeEEEEEeecCCCceEEEeeecCCCCceeEEEe--cCCCCEEEEeeCCCeEEEEEeeec
Q psy11529        123 RLISVCYFESENDWWVAKHIKKPIKSTITCLDW--HPNNHLLGCGSTDFKVRVFSAYIK  179 (244)
Q Consensus       123 ~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~--~p~~~~l~~~~~dg~i~i~d~~~~  179 (244)
                      +.|++||+++.+.     .....|...|.+++|  +|++++|++++.||.|++||++..
T Consensus       108 g~v~iwd~~~~~~-----~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~  161 (368)
T 3mmy_A          108 KTAKMWDLSSNQA-----IQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSS  161 (368)
T ss_dssp             SEEEEEETTTTEE-----EEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCS
T ss_pred             CcEEEEEcCCCCc-----eeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCC
Confidence            9999999998764     224557889999999  899999999999999999998654

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.96  E-value=6.4e-27  Score=179.78  Aligned_cols=197  Identities=13%  Similarity=0.098  Sum_probs=156.8

Q ss_pred             CCceEEEEEcCCCCeEEE-ecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeE-EEEeCCccEEEEeeeC
Q psy11529          9 INPVTTHAWNNTRQQLAF-TPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRI-VTCSADRNAYVWTQNN   86 (244)
Q Consensus         9 ~~~v~~~~~~~~~~~l~~-~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~iwd~~~   86 (244)
                      ...+.+++|+|++++|++ ++.++.|++||+.+  +  +....+. +...+.+++|+|+++++ ++++.++.|++||  .
T Consensus        73 ~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~--~--~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d--~  145 (391)
T 1l0q_A           73 GSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTS--N--TVAGTVK-TGKSPLGLALSPDGKKLYVTNNGDKTVSVIN--T  145 (391)
T ss_dssp             SSSEEEEEECTTSSEEEEEETTTTEEEEEETTT--T--EEEEEEE-CSSSEEEEEECTTSSEEEEEETTTTEEEEEE--T
T ss_pred             CCCccceEECCCCCEEEEEECCCCEEEEEECCC--C--eEEEEEe-CCCCcceEEECCCCCEEEEEeCCCCEEEEEE--C
Confidence            458999999999998755 45679999999987  4  5555565 44578999999999977 6778899999999  7


Q ss_pred             CCCCceeeEEEeccCcceEEEEECCCCCeE-EEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEe
Q psy11529         87 DDKKWKPTLVLLRINRAATCVKWSPLENKF-AAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCG  165 (244)
Q Consensus        87 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~  165 (244)
                      .+++.....   .....+.+++|+|+++++ ++++.++.|++||+++.+.    ... ..+...+.+++|+|++++|+++
T Consensus       146 ~~~~~~~~~---~~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~----~~~-~~~~~~~~~~~~~~~g~~l~~~  217 (391)
T 1l0q_A          146 VTKAVINTV---SVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSV----IDT-VKVEAAPSGIAVNPEGTKAYVT  217 (391)
T ss_dssp             TTTEEEEEE---ECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE----EEE-EECSSEEEEEEECTTSSEEEEE
T ss_pred             CCCcEEEEE---ecCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeE----EEE-EecCCCccceEECCCCCEEEEE
Confidence            777643332   234567999999999887 5667889999999988754    222 2245688999999999998888


Q ss_pred             e---CCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEE-EEeeCCCcEEEEeCCC
Q psy11529        166 S---TDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKL-CWTSHDGSINVRMSQQ  241 (244)
Q Consensus       166 ~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~vwd~~~  241 (244)
                      +   .++.|++||+                  ..++.+..+..+    ..+.+++|+|++++| ++++.|+.|++||+++
T Consensus       218 ~~~~~~~~v~~~d~------------------~~~~~~~~~~~~----~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~  275 (391)
T 1l0q_A          218 NVDKYFNTVSMIDT------------------GTNKITARIPVG----PDPAGIAVTPDGKKVYVALSFXNTVSVIDTAT  275 (391)
T ss_dssp             EECSSCCEEEEEET------------------TTTEEEEEEECC----SSEEEEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred             ecCcCCCcEEEEEC------------------CCCeEEEEEecC----CCccEEEEccCCCEEEEEcCCCCEEEEEECCC
Confidence            7   6899999998                  567777777764    457899999999977 5668899999999975


Q ss_pred             C
Q psy11529        242 V  242 (244)
Q Consensus       242 ~  242 (244)
                      .
T Consensus       276 ~  276 (391)
T 1l0q_A          276 N  276 (391)
T ss_dssp             T
T ss_pred             C
Confidence            3

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.96  E-value=3e-27  Score=183.98  Aligned_cols=199  Identities=10%  Similarity=-0.008  Sum_probs=161.2

Q ss_pred             CCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEE-EeCCccEEEEeeeC
Q psy11529          8 GINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVT-CSADRNAYVWTQNN   86 (244)
Q Consensus         8 ~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d~~i~iwd~~~   86 (244)
                      |.+.|.+++|+|+++++++++.|+.|++||+.+  +  +....+..|...+.+++|+|+++++++ ++.|+.|++||  .
T Consensus       168 ~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d--~  241 (433)
T 3bws_A          168 KLGFVETISIPEHNELWVSQMQANAVHVFDLKT--L--AYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVID--R  241 (433)
T ss_dssp             TCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTT--C--CEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEE--T
T ss_pred             cCCceeEEEEcCCCEEEEEECCCCEEEEEECCC--c--eEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEE--C
Confidence            456899999999999999999999999999977  4  566777788999999999999998854 44799999999  7


Q ss_pred             CCCCceeeEEEeccCcceEEEEECCCCCeEEEee--------CCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCC
Q psy11529         87 DDKKWKPTLVLLRINRAATCVKWSPLENKFAAGS--------GARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPN  158 (244)
Q Consensus        87 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--------~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~  158 (244)
                      .+++...   .......+.+++|+|+++.+++++        .|+.|++||+++++.    .. ...+...+.+++|+|+
T Consensus       242 ~~~~~~~---~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~----~~-~~~~~~~~~~~~~~~~  313 (433)
T 3bws_A          242 KTKLEIR---KTDKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKL----ID-TIGPPGNKRHIVSGNT  313 (433)
T ss_dssp             TTTEEEE---ECCCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEE----EE-EEEEEECEEEEEECSS
T ss_pred             CCCcEEE---EecCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcE----Ee-eccCCCCcceEEECCC
Confidence            7765322   233456699999999999999888        588999999987754    11 1233457889999999


Q ss_pred             CCE-EEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeC-------
Q psy11529        159 NHL-LGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSH-------  230 (244)
Q Consensus       159 ~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-------  230 (244)
                      ++. +++++.++.|++||+                  ..++.+..+. +   ...+.+++|+|+|++|++++.       
T Consensus       314 g~~l~~~~~~~~~v~v~d~------------------~~~~~~~~~~-~---~~~~~~~~~s~dg~~l~~~~~~~~~~~~  371 (433)
T 3bws_A          314 ENKIYVSDMCCSKIEVYDL------------------KEKKVQKSIP-V---FDKPNTIALSPDGKYLYVSCRGPNHPTE  371 (433)
T ss_dssp             TTEEEEEETTTTEEEEEET------------------TTTEEEEEEE-C---SSSEEEEEECTTSSEEEEEECCCCCTTT
T ss_pred             CCEEEEEecCCCEEEEEEC------------------CCCcEEEEec-C---CCCCCeEEEcCCCCEEEEEecCCCcccc
Confidence            974 566688999999998                  5566666665 3   678999999999998888876       


Q ss_pred             --------CCcEEEEeCCCC
Q psy11529        231 --------DGSINVRMSQQV  242 (244)
Q Consensus       231 --------dg~i~vwd~~~~  242 (244)
                              ||.|++||+++.
T Consensus       372 ~~~~~g~~dg~v~~~d~~~~  391 (433)
T 3bws_A          372 GYLKKGLVLGKVYVIDTTTD  391 (433)
T ss_dssp             CTTSCCSSCCEEEEEETTTT
T ss_pred             ccccccccceEEEEEECCCC
Confidence                    579999998763

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.96  E-value=1e-26  Score=180.91  Aligned_cols=199  Identities=13%  Similarity=0.074  Sum_probs=158.9

Q ss_pred             eCCCceEEEEEcCCCCeEE-EecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEe--------CCc
Q psy11529          7 FGINPVTTHAWNNTRQQLA-FTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCS--------ADR   77 (244)
Q Consensus         7 ~~~~~v~~~~~~~~~~~l~-~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--------~d~   77 (244)
                      .+...+.+++|+|+++.++ +++.++.|++||+.+  +  +....+.. ...+.+++|+|+++++++++        .|+
T Consensus       209 ~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~--~--~~~~~~~~-~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg  283 (433)
T 3bws_A          209 LTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKT--K--LEIRKTDK-IGLPRGLLLSKDGKELYIAQFSASNQESGGG  283 (433)
T ss_dssp             CSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTT--T--EEEEECCC-CSEEEEEEECTTSSEEEEEEEESCTTCSCCE
T ss_pred             CCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCC--C--cEEEEecC-CCCceEEEEcCCCCEEEEEECCCCccccCCC
Confidence            3577899999999999875 455799999999976  4  55556654 45699999999999999887        488


Q ss_pred             cEEEEeeeCCCCCceeeEEEeccCcceEEEEECCCCCeE-EEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEec
Q psy11529         78 NAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKF-AAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWH  156 (244)
Q Consensus        78 ~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~  156 (244)
                      .|++||  ..+++....   ..+...+.+++|+|+++.+ ++++.++.+++||+++.+.    ... ..+...+.+++|+
T Consensus       284 ~i~~~d--~~~~~~~~~---~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~----~~~-~~~~~~~~~~~~s  353 (433)
T 3bws_A          284 RLGIYS--MDKEKLIDT---IGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKV----QKS-IPVFDKPNTIALS  353 (433)
T ss_dssp             EEEEEE--TTTTEEEEE---EEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEE----EEE-EECSSSEEEEEEC
T ss_pred             eEEEEE--CCCCcEEee---ccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcE----EEE-ecCCCCCCeEEEc
Confidence            999999  777754332   3455688999999999765 5568899999999987654    122 2245778999999


Q ss_pred             CCCCEEEEeeC---------------CCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecC
Q psy11529        157 PNNHLLGCGST---------------DFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKD  221 (244)
Q Consensus       157 p~~~~l~~~~~---------------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  221 (244)
                      |+++++++++.               ||.|++||+                  .+++.+..+..    ...+.+++|+|+
T Consensus       354 ~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~------------------~~~~~~~~~~~----~~~~~~~~~s~d  411 (433)
T 3bws_A          354 PDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDT------------------TTDTVKEFWEA----GNQPTGLDVSPD  411 (433)
T ss_dssp             TTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEET------------------TTTEEEEEEEC----SSSEEEEEECTT
T ss_pred             CCCCEEEEEecCCCccccccccccccceEEEEEEC------------------CCCcEEEEecC----CCCCceEEEcCC
Confidence            99998888776               579999998                  66777777766    457899999999


Q ss_pred             CCEEEEeeC-CCcEEEEeCCCC
Q psy11529        222 GNKLCWTSH-DGSINVRMSQQV  242 (244)
Q Consensus       222 ~~~l~~~~~-dg~i~vwd~~~~  242 (244)
                      |++|++++. |+.|++|+++.+
T Consensus       412 g~~l~~~~~~d~~i~v~~~~~~  433 (433)
T 3bws_A          412 NRYLVISDFLDHQIRVYRRDGF  433 (433)
T ss_dssp             SCEEEEEETTTTEEEEEEETTC
T ss_pred             CCEEEEEECCCCeEEEEEecCC
Confidence            999988875 999999998753

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.96  E-value=2.6e-27  Score=174.41  Aligned_cols=158  Identities=11%  Similarity=0.018  Sum_probs=118.6

Q ss_pred             eCCCceEEEEEcC---CCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCC---CceEEEEeCCCCCeE----------
Q psy11529          7 FGINPVTTHAWNN---TRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHD---LKVTGIDWAPNTNRI----------   70 (244)
Q Consensus         7 ~~~~~v~~~~~~~---~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l----------   70 (244)
                      .|...++.++|+|   ++.+|++++.|++|+|||+.+  +  +++.++.+|.   ..+.+++|+|+|.++          
T Consensus       176 ~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~T--G--k~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w  251 (356)
T 2w18_A          176 LMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKT--G--QLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKE  251 (356)
T ss_dssp             ECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTT--C--CEEEEEECCC---CCCEEEEEEETTEEEEEEC------
T ss_pred             cCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCC--C--cEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcc
Confidence            4555666777777   667899999999999999987  5  7788887654   467788999999876          


Q ss_pred             --EEEeCCccEEEEeeeCCCCCceeeEEE---eccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecC
Q psy11529         71 --VTCSADRNAYVWTQNNDDKKWKPTLVL---LRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKP  145 (244)
Q Consensus        71 --~~~~~d~~i~iwd~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~  145 (244)
                        ++|+.|++|++||  ..+++....+..   .+|...+.+..++  +..+++++.|++|+|||+.+++.    .....+
T Consensus       252 ~laSGs~D~tIklWd--~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tGk~----l~tL~g  323 (356)
T 2w18_A          252 SESLRSPVFQLIVIN--PKTTLSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLGQC----TALLPP  323 (356)
T ss_dssp             ------CCEEEEEEE--TTTTEEEEEEEECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTCSE----EEEECC
T ss_pred             eeeccCCCcEEEEEE--CCCCEEEEEEEeeccCCCcceeEccccC--CCEEEEEcCCCcEEEEECCCCcE----EEEecC
Confidence              5678899999999  777765433321   2444444444443  77899999999999999999875    445566


Q ss_pred             CCCce-eEEEecCCCCEEEEeeCCCeEEEEEe
Q psy11529        146 IKSTI-TCLDWHPNNHLLGCGSTDFKVRVFSA  176 (244)
Q Consensus       146 ~~~~v-~~~~~~p~~~~l~~~~~dg~i~i~d~  176 (244)
                      |...+ ..++|+|||++|++|+.|++|+|||+
T Consensus       324 H~~~vvs~vafSPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          324 VSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             C--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred             CCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence            66554 46899999999999999999999996

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.96  E-value=6.6e-27  Score=181.79  Aligned_cols=207  Identities=10%  Similarity=0.034  Sum_probs=152.0

Q ss_pred             CCceEEEEEcCCCCeEEEecCCCeEEEeeeccCC------Cc-ce-----eeeeeccCCCceEEEEeCCCCCeEE----E
Q psy11529          9 INPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAA------ND-WS-----QLDVLDGHDLKVTGIDWAPNTNRIV----T   72 (244)
Q Consensus         9 ~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~------~~-~~-----~~~~~~~~~~~v~~~~~~~~~~~l~----~   72 (244)
                      ...++.+++++++.++++++.++ ++||+.....      .. ..     ....+ .+...|.+++|+|++++|+    +
T Consensus        36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~l~~spdg~~lav~~~s  113 (434)
T 2oit_A           36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLV-PMKFPIHHLALSCDNLTLSACMMS  113 (434)
T ss_dssp             CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEE-CCSSCEEEEEECTTSCEEEEEEEE
T ss_pred             CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccc-cCCCcccEEEEcCCCCEEEEEEec
Confidence            34588999999999999998887 8998753200      00 00     01112 2567899999999999999    7


Q ss_pred             EeCCccEEEEeeeCCCC--------Cce-eeEEEeccCcceEEEEECCC-CCeEEEeeCCCeEEEEEeecCCCceEEEee
Q psy11529         73 CSADRNAYVWTQNNDDK--------KWK-PTLVLLRINRAATCVKWSPL-ENKFAAGSGARLISVCYFESENDWWVAKHI  142 (244)
Q Consensus        73 ~~~d~~i~iwd~~~~~~--------~~~-~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~  142 (244)
                      ++.|+.|++||+  .++        +.. ......+|...|.+++|+|+ +.+|++++.|++|++||+++...    ...
T Consensus       114 gs~d~~v~iwd~--~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~----~~~  187 (434)
T 2oit_A          114 SEYGSIIAFFDV--RTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVK----VCA  187 (434)
T ss_dssp             TTTEEEEEEEEH--HHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEE----EEE
T ss_pred             cCCCceEEEEEc--cccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcc----eee
Confidence            888999999994  332        111 12223457889999999998 88999999999999999998743    233


Q ss_pred             ecCCCCceeEEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCC----CCCCeEEEEE
Q psy11529        143 KKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSS----GGGWIHSVAF  218 (244)
Q Consensus       143 ~~~~~~~v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~~~~~  218 (244)
                      ...|...+.+++|+|+|++|++|+.||.|++||++                   ++....+..+..    +...+.+++|
T Consensus       188 ~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-------------------~~~~~~~~~~~~~~~~~~~~v~~v~w  248 (434)
T 2oit_A          188 TLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-------------------LQEKKVIPCPPFYESDHPVRVLDVLW  248 (434)
T ss_dssp             EECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-------------------CCEEEEECCCTTCCTTSCEEEEEEEE
T ss_pred             ccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-------------------CcccccccCCcccCCCCceeEEEEEE
Confidence            44577899999999999999999999999999983                   333333333210    0347999999


Q ss_pred             ecCCCEEEEe-eCCC------cEEEEeCCCC
Q psy11529        219 SKDGNKLCWT-SHDG------SINVRMSQQV  242 (244)
Q Consensus       219 s~~~~~l~~~-~~dg------~i~vwd~~~~  242 (244)
                      ++++.++++. +.||      .+++|++++.
T Consensus       249 ~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~  279 (434)
T 2oit_A          249 IGTYVFAIVYAAADGTLETSPDVVMALLPKK  279 (434)
T ss_dssp             EETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred             ecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence            9998877553 3443      3899999764

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.95  E-value=4.3e-25  Score=162.94  Aligned_cols=204  Identities=11%  Similarity=0.104  Sum_probs=154.1

Q ss_pred             CCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccC-CCceEEEEeCCCCCeEEEEe--CCccEEEEee
Q psy11529          8 GINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGH-DLKVTGIDWAPNTNRIVTCS--ADRNAYVWTQ   84 (244)
Q Consensus         8 ~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~--~d~~i~iwd~   84 (244)
                      +...|.+++|+|+|++|++++ ++.|++|++.+++   +.......+ ...+.+++|+|++++|++++  .++...||.+
T Consensus        40 ~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~---~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~  115 (297)
T 2ojh_A           40 TPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDP---SPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLL  115 (297)
T ss_dssp             ESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCC---SCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEE
T ss_pred             CCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCC---CceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEEE
Confidence            578899999999999999986 7899999986511   233344444 47789999999999999988  3456677764


Q ss_pred             eCCCCCceeeEEEeccCcceEEEEECCCCCeEE-EeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEE
Q psy11529         85 NNDDKKWKPTLVLLRINRAATCVKWSPLENKFA-AGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLG  163 (244)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~  163 (244)
                      +..++..   ..+ .....+..++|+|+++.|+ ++..++.+++|+++....   .......+...+.+++|+|++++|+
T Consensus       116 ~~~~~~~---~~~-~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~s~dg~~l~  188 (297)
T 2ojh_A          116 PSTGGTP---RLM-TKNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSG---VETRLTHGEGRNDGPDYSPDGRWIY  188 (297)
T ss_dssp             ETTCCCC---EEC-CSSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTC---CEEECCCSSSCEEEEEECTTSSEEE
T ss_pred             ECCCCce---EEe-ecCCCccceEECCCCCEEEEEECCCCceEEEEEECCCC---cceEcccCCCccccceECCCCCEEE
Confidence            3555542   222 2334588999999999887 677899999999876543   1234455667899999999999887


Q ss_pred             Eee-CCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCC-----------
Q psy11529        164 CGS-TDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHD-----------  231 (244)
Q Consensus       164 ~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----------  231 (244)
                      +++ .++.+++|++.                 ..+.....+..+   ...+..++|+|+|++|++++.+           
T Consensus       189 ~~~~~~~~~~i~~~~-----------------~~~~~~~~~~~~---~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~  248 (297)
T 2ojh_A          189 FNSSRTGQMQIWRVR-----------------VDGSSVERITDS---AYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLD  248 (297)
T ss_dssp             EEECTTSSCEEEEEE-----------------TTSSCEEECCCC---SEEEEEEEECTTSSEEEEEEEETTCCSCCSSEE
T ss_pred             EEecCCCCccEEEEC-----------------CCCCCcEEEecC---CcccCCeEECCCCCEEEEEEcCCCCCcccccCc
Confidence            766 58999999984                 134455666666   7789999999999999888765           


Q ss_pred             CcEEEEeCCCC
Q psy11529        232 GSINVRMSQQV  242 (244)
Q Consensus       232 g~i~vwd~~~~  242 (244)
                      +.|++||+++.
T Consensus       249 ~~l~~~d~~~~  259 (297)
T 2ojh_A          249 VRVQLMDMDGG  259 (297)
T ss_dssp             EEEEEEETTSC
T ss_pred             eEEEEEecCCC
Confidence            56999998753

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.95  E-value=4.7e-25  Score=170.69  Aligned_cols=185  Identities=17%  Similarity=0.170  Sum_probs=143.7

Q ss_pred             CCeEEEecCC------CeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCc---cEEEEeeeCCCCCc
Q psy11529         21 RQQLAFTPNN------QEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADR---NAYVWTQNNDDKKW   91 (244)
Q Consensus        21 ~~~l~~~~~d------~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~---~i~iwd~~~~~~~~   91 (244)
                      +..+++++.+      +.|++||+++     .....+.+|...+.+++|+|+|++|++++.++   .|++||  +.+++.
T Consensus       143 ~~~l~~~s~~~~~~~~~~i~i~d~~g-----~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d--~~tg~~  215 (415)
T 2hqs_A          143 RTRIAYVVQTNGGQFPYELRVSDYDG-----YNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQT--LANGAV  215 (415)
T ss_dssp             TCEEEEEEECSSSSCCEEEEEEETTS-----CSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEE--TTTCCE
T ss_pred             CCEEEEEEecCCCCccceEEEEcCCC-----CCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEE--CCCCcE
Confidence            5666666543      7999999976     45667778999999999999999999998875   999999  777764


Q ss_pred             eeeEEEeccCcceEEEEECCCCCeEE-EeeCCC--eEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEeeC-
Q psy11529         92 KPTLVLLRINRAATCVKWSPLENKFA-AGSGAR--LISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGST-  167 (244)
Q Consensus        92 ~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~--~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~-  167 (244)
                      .   .+..+...+.+++|+|+|+.|+ +++.++  .|++||+++++.     .....+...+.+++|+|||++|++++. 
T Consensus       216 ~---~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-----~~l~~~~~~~~~~~~spdg~~l~~~s~~  287 (415)
T 2hqs_A          216 R---QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-----RQVTDGRSNNTEPTWFPDSQNLAFTSDQ  287 (415)
T ss_dssp             E---EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-----EECCCCSSCEEEEEECTTSSEEEEEECT
T ss_pred             E---EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-----EeCcCCCCcccceEECCCCCEEEEEECC
Confidence            2   3456778899999999999888 555555  488888877653     344556678999999999999888876 


Q ss_pred             CC--eEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCC---CcEEEEeCCCC
Q psy11529        168 DF--KVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHD---GSINVRMSQQV  242 (244)
Q Consensus       168 dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~vwd~~~~  242 (244)
                      ++  .|++||+                  ..++ ...+..+   ...+.+++|+|||++|++++.+   ..|++||+++.
T Consensus       288 ~g~~~i~~~d~------------------~~~~-~~~l~~~---~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~  345 (415)
T 2hqs_A          288 AGRPQVYKVNI------------------NGGA-PQRITWE---GSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATG  345 (415)
T ss_dssp             TSSCEEEEEET------------------TSSC-CEECCCS---SSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTC
T ss_pred             CCCcEEEEEEC------------------CCCC-EEEEecC---CCcccCeEECCCCCEEEEEECcCCceEEEEEECCCC
Confidence            45  6777776                  3333 3334445   6778999999999999988764   58999998753

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.94  E-value=3e-24  Score=161.85  Aligned_cols=216  Identities=13%  Similarity=0.066  Sum_probs=149.1

Q ss_pred             CCCceEEEEEcCCCCeEEEecCC-CeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeC-CccEEEEeee
Q psy11529          8 GINPVTTHAWNNTRQQLAFTPNN-QEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSA-DRNAYVWTQN   85 (244)
Q Consensus         8 ~~~~v~~~~~~~~~~~l~~~~~d-~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~iwd~~   85 (244)
                      +...+.+++|+|+|++|++++.+ +.|.+|++....+....+..+..+. .+..++|+|+++++++++. ++.|.+||+ 
T Consensus        36 ~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~-  113 (343)
T 1ri6_A           36 VPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRL-  113 (343)
T ss_dssp             CSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEE-
T ss_pred             cCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEEC-
Confidence            35678899999999988888776 9999999972114445555565444 7899999999998876665 889999994 


Q ss_pred             CCCCCceeeEEEeccCcceEEEEECCCCCeEEEee-CCCeEEEEEeecCCCceEEE--eeecCCCCceeEEEecCCCCEE
Q psy11529         86 NDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGS-GARLISVCYFESENDWWVAK--HIKKPIKSTITCLDWHPNNHLL  162 (244)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~--~~~~~~~~~v~~~~~~p~~~~l  162 (244)
                       .++..............+.+++|+|+++++++++ .++.|.+||++.........  .........+..++|+|+++++
T Consensus       114 -~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l  192 (343)
T 1ri6_A          114 -EDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYA  192 (343)
T ss_dssp             -ETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEE
T ss_pred             -CCCccccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEE
Confidence             3332222222333455688999999999888877 89999999998733311111  2223334578899999999977


Q ss_pred             EEee-CCCeEEEEEeeecccccCCCCCCCCccccccceeEEec---CCCCCCCCeEEEEEecCCCEEEEe-eCCCcEEEE
Q psy11529        163 GCGS-TDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELN---NSSSGGGWIHSVAFSKDGNKLCWT-SHDGSINVR  237 (244)
Q Consensus       163 ~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~vw  237 (244)
                      ++++ .++.|.+|++.....              .........   ........+..++|+|+|++|+++ ..++.|.+|
T Consensus       193 ~~~~~~~~~i~~~~~~~~~g--------------~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~  258 (343)
T 1ri6_A          193 YCVNELNSSVDVWELKDPHG--------------NIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVF  258 (343)
T ss_dssp             EEEETTTTEEEEEESSCTTS--------------CCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred             EEEeCCCCEEEEEEecCCCC--------------cEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEE
Confidence            6554 789999999842110              011111121   110003457789999999987744 478999999


Q ss_pred             eCC
Q psy11529        238 MSQ  240 (244)
Q Consensus       238 d~~  240 (244)
                      |++
T Consensus       259 d~~  261 (343)
T 1ri6_A          259 SVS  261 (343)
T ss_dssp             EEC
T ss_pred             EEc
Confidence            987

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.94  E-value=7e-23  Score=154.98  Aligned_cols=212  Identities=11%  Similarity=0.117  Sum_probs=145.8

Q ss_pred             CCCceEEEEEcCCCCeEEEec-CCCeEEEeeeccCCCcceeeeeecc---------CCCceEEEEeCCCCCeEEEEeCCc
Q psy11529          8 GINPVTTHAWNNTRQQLAFTP-NNQEVHLYQYEKAANDWSQLDVLDG---------HDLKVTGIDWAPNTNRIVTCSADR   77 (244)
Q Consensus         8 ~~~~v~~~~~~~~~~~l~~~~-~d~~v~v~~~~~~~~~~~~~~~~~~---------~~~~v~~~~~~~~~~~l~~~~~d~   77 (244)
                      +...+..++|+|+|++|++++ .++.|.+|++... +....+..+..         +...+.+++|+|+|+.+++...++
T Consensus        84 ~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~-g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~  162 (347)
T 3hfq_A           84 PGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAAD-GALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSD  162 (347)
T ss_dssp             ESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTT-SCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTT
T ss_pred             CCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCC-CCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCC
Confidence            356778899999999888877 6799999999531 22334443332         123488999999999666666688


Q ss_pred             cEEEEeeeCC-CCCceeeEEEec-cCcceEEEEECCCCCeEEE-eeCCCeEEEEEeecCCCceEEEeeecCCC------C
Q psy11529         78 NAYVWTQNND-DKKWKPTLVLLR-INRAATCVKWSPLENKFAA-GSGARLISVCYFESENDWWVAKHIKKPIK------S  148 (244)
Q Consensus        78 ~i~iwd~~~~-~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~-~~~d~~i~i~d~~~~~~~~~~~~~~~~~~------~  148 (244)
                      .|.+|+  +. +++......... ....+..++|+|+|+++++ ...++.+.+|+++................      .
T Consensus       163 ~v~~~~--~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~  240 (347)
T 3hfq_A          163 KVYVYN--VSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHN  240 (347)
T ss_dssp             EEEEEE--ECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCC
T ss_pred             EEEEEE--ECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCC
Confidence            999999  44 454333222222 2336788999999997666 45688999999986332111111111111      4


Q ss_pred             ceeEEEecCCCCEE-EEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEE
Q psy11529        149 TITCLDWHPNNHLL-GCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCW  227 (244)
Q Consensus       149 ~v~~~~~~p~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~  227 (244)
                      .+..++|+|||++| ++...++.|.+|++...               ...+.+..+..+   ...+..++|+|||++|++
T Consensus       241 ~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~---------------g~~~~~~~~~~~---~~~~~~~~~spdg~~l~v  302 (347)
T 3hfq_A          241 GAAAIRLSHDGHFLYVSNRGYNTLAVFAVTAD---------------GHLTLIQQISTE---GDFPRDFDLDPTEAFVVV  302 (347)
T ss_dssp             EEEEEEECTTSCEEEEEEETTTEEEEEEECGG---------------GCEEEEEEEECS---SSCCCEEEECTTSSEEEE
T ss_pred             cceeEEECCCCCEEEEEeCCCCEEEEEEECCC---------------CcEEEeEEEecC---CCCcCeEEECCCCCEEEE
Confidence            58899999999977 45556899999998311               022445556555   566889999999998888


Q ss_pred             eeC-CCcEEEEeCC
Q psy11529        228 TSH-DGSINVRMSQ  240 (244)
Q Consensus       228 ~~~-dg~i~vwd~~  240 (244)
                      ++. ++.|.+|+++
T Consensus       303 ~~~~~~~v~v~~~d  316 (347)
T 3hfq_A          303 VNQNTDNATLYARD  316 (347)
T ss_dssp             EETTTTEEEEEEEC
T ss_pred             EEcCCCcEEEEEEe
Confidence            775 4899999553

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.93  E-value=2.8e-23  Score=156.03  Aligned_cols=203  Identities=11%  Similarity=0.091  Sum_probs=147.0

Q ss_pred             eCCCceEEEEEcCCCCeEEEecC-CCeEEEeeeccCCCccee-eeeeccCCCceEEEEeCCCCCeEEEEeCCc---cEEE
Q psy11529          7 FGINPVTTHAWNNTRQQLAFTPN-NQEVHLYQYEKAANDWSQ-LDVLDGHDLKVTGIDWAPNTNRIVTCSADR---NAYV   81 (244)
Q Consensus         7 ~~~~~v~~~~~~~~~~~l~~~~~-d~~v~v~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~---~i~i   81 (244)
                      .+...+ +++|+|+|+++++++. ++.|.+||+.+  +  +. ...+..+..+..+++|+|++++++++..++   .|.+
T Consensus        38 ~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~--~--~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v  112 (331)
T 3u4y_A           38 LGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQL--E--PPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQS  112 (331)
T ss_dssp             CCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSS--S--SCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEE
T ss_pred             ccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCC--C--ceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEE
Confidence            345566 9999999997666554 88999999977  4  33 556665666666699999999998555553   8999


Q ss_pred             EeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEe-eCCCe-EEEEEeecCCCceEEEeeecCCCCceeEEEecCCC
Q psy11529         82 WTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAG-SGARL-ISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNN  159 (244)
Q Consensus        82 wd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~-i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~  159 (244)
                      ||  ..+++.....   .......+++|+|+|++++++ ..++. +.+|+++.....................++|+|+|
T Consensus       113 ~d--~~~~~~~~~~---~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg  187 (331)
T 3u4y_A          113 YS--FLKNKFISTI---PIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDG  187 (331)
T ss_dssp             EE--TTTTEEEEEE---ECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTS
T ss_pred             EE--CCCCCeEEEE---ECCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCC
Confidence            99  7777643332   334567899999999866655 45577 99999986554222211222334568999999999


Q ss_pred             CEEEEe-eCCCeEEEEEeeecccccCCCCCCCCccccccce---eEEecCCCCCCCCeEEEEEecCCCEEEEee-CCCcE
Q psy11529        160 HLLGCG-STDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNC---LVELNNSSSGGGWIHSVAFSKDGNKLCWTS-HDGSI  234 (244)
Q Consensus       160 ~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i  234 (244)
                      ++++++ ..++.|++||+                  .+++.   +..+..    ...+..++|+|||++|+.++ .++.|
T Consensus       188 ~~l~v~~~~~~~v~v~d~------------------~~~~~~~~~~~~~~----~~~~~~~~~spdg~~l~v~~~~~~~i  245 (331)
T 3u4y_A          188 NFAFVANLIGNSIGILET------------------QNPENITLLNAVGT----NNLPGTIVVSRDGSTVYVLTESTVDV  245 (331)
T ss_dssp             SEEEEEETTTTEEEEEEC------------------SSTTSCEEEEEEEC----SSCCCCEEECTTSSEEEEECSSEEEE
T ss_pred             CEEEEEeCCCCeEEEEEC------------------CCCcccceeeeccC----CCCCceEEECCCCCEEEEEEcCCCEE
Confidence            966554 46889999998                  44555   666654    56678999999999776554 57889


Q ss_pred             EEEeCCC
Q psy11529        235 NVRMSQQ  241 (244)
Q Consensus       235 ~vwd~~~  241 (244)
                      .+||+++
T Consensus       246 ~~~d~~~  252 (331)
T 3u4y_A          246 FNFNQLS  252 (331)
T ss_dssp             EEEETTT
T ss_pred             EEEECCC
Confidence            9999875

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.93  E-value=6.5e-23  Score=154.52  Aligned_cols=209  Identities=11%  Similarity=0.022  Sum_probs=144.0

Q ss_pred             CceEEEEEcCCCCeEEEec-CCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEe-CCccEEEEeeeCC
Q psy11529         10 NPVTTHAWNNTRQQLAFTP-NNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCS-ADRNAYVWTQNND   87 (244)
Q Consensus        10 ~~v~~~~~~~~~~~l~~~~-~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~   87 (244)
                      ..+.+++|+|++++|++++ .++.|.+|++.. +........+. ....+.+++|+|+++++++++ .++.|.+||  +.
T Consensus        84 ~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~-~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d--~~  159 (343)
T 1ri6_A           84 GSLTHISTDHQGQFVFVGSYNAGNVSVTRLED-GLPVGVVDVVE-GLDGCHSANISPDNRTLWVPALKQDRICLFT--VS  159 (343)
T ss_dssp             SCCSEEEECTTSSEEEEEETTTTEEEEEEEET-TEEEEEEEEEC-CCTTBCCCEECTTSSEEEEEEGGGTEEEEEE--EC
T ss_pred             CCCcEEEEcCCCCEEEEEecCCCeEEEEECCC-Ccccccccccc-CCCCceEEEECCCCCEEEEecCCCCEEEEEE--ec
Confidence            4778899999999876665 488999999942 11113444444 344688999999999888877 799999999  55


Q ss_pred             C-CCceeeE--EEe-ccCcceEEEEECCCCCeEEEee-CCCeEEEEEeecCCCceE-EEeee-c--C--CCCceeEEEec
Q psy11529         88 D-KKWKPTL--VLL-RINRAATCVKWSPLENKFAAGS-GARLISVCYFESENDWWV-AKHIK-K--P--IKSTITCLDWH  156 (244)
Q Consensus        88 ~-~~~~~~~--~~~-~~~~~v~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~-~~~~~-~--~--~~~~v~~~~~~  156 (244)
                      + ++.....  ... .....+..++|+|+++++++++ .++.+.+|+++....... ..... .  .  ....+..++|+
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s  239 (343)
T 1ri6_A          160 DDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHIT  239 (343)
T ss_dssp             TTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEEC
T ss_pred             CCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEEC
Confidence            5 5433222  222 2345788999999999776655 789999999965322111 11111 1  1  12356789999


Q ss_pred             CCCCEEEE-eeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEee-CCCcE
Q psy11529        157 PNNHLLGC-GSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTS-HDGSI  234 (244)
Q Consensus       157 p~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i  234 (244)
                      |+|++|++ +..++.|.+||+....              ...+.+..+..+   . .+..++|+|+|++|++++ .++.|
T Consensus       240 ~dg~~l~v~~~~~~~i~v~d~~~~~--------------~~~~~~~~~~~~---~-~~~~~~~s~dg~~l~~~~~~~~~v  301 (343)
T 1ri6_A          240 PDGRHLYACDRTASLITVFSVSEDG--------------SVLSKEGFQPTE---T-QPRGFNVDHSGKYLIAAGQKSHHI  301 (343)
T ss_dssp             TTSSEEEEEETTTTEEEEEEECTTS--------------CCEEEEEEEECS---S-SCCCEEECTTSSEEEEECTTTCEE
T ss_pred             CCCCEEEEEecCCCEEEEEEEcCCC--------------CceEEeeeecCC---C-ccceEEECCCCCEEEEecCCCCeE
Confidence            99987774 4478999999983100              123445555553   3 388999999999888877 68999


Q ss_pred             EEEeCC
Q psy11529        235 NVRMSQ  240 (244)
Q Consensus       235 ~vwd~~  240 (244)
                      .+|+++
T Consensus       302 ~v~~~d  307 (343)
T 1ri6_A          302 SVYEIV  307 (343)
T ss_dssp             EEEEEE
T ss_pred             EEEEEc
Confidence            999654

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.93  E-value=8.2e-23  Score=154.59  Aligned_cols=212  Identities=10%  Similarity=0.022  Sum_probs=144.4

Q ss_pred             CCceEEEEEcCCCCeEEEecC---CCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEe-CCccEEEEee
Q psy11529          9 INPVTTHAWNNTRQQLAFTPN---NQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCS-ADRNAYVWTQ   84 (244)
Q Consensus         9 ~~~v~~~~~~~~~~~l~~~~~---d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~   84 (244)
                      ...+..++|+|||+ |++++.   ++.|++|++.+  +..+.+..+..+...+..++|+|+|++|++++ .++.+.+|++
T Consensus        39 ~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~--g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~  115 (347)
T 3hfq_A           39 TQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDG--QTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKI  115 (347)
T ss_dssp             CSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEET--TEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             cCCcceEEEccCCe-EEEEEecCCCceEEEEEecC--CcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEe
Confidence            35567799999999 554443   68999999976  54455666566778889999999999888887 6799999994


Q ss_pred             eCCCCCceeeEEEec---------cCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEe
Q psy11529         85 NNDDKKWKPTLVLLR---------INRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDW  155 (244)
Q Consensus        85 ~~~~~~~~~~~~~~~---------~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~  155 (244)
                      . .++..........         ....+.+++|+|+++.+++...++.|.+|+++..................+..++|
T Consensus       116 ~-~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~  194 (347)
T 3hfq_A          116 A-ADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVF  194 (347)
T ss_dssp             C-TTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEE
T ss_pred             C-CCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEE
Confidence            2 3444332222211         11247889999999966666678899999998433211222222233346788999


Q ss_pred             cCCCCEEEE-eeCCCeEEEEEeeecccccCCCCCCCCccccccc--eeEEecCCC---CCCCCeEEEEEecCCCEEE-Ee
Q psy11529        156 HPNNHLLGC-GSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGN--CLVELNNSS---SGGGWIHSVAFSKDGNKLC-WT  228 (244)
Q Consensus       156 ~p~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~---~~~~~v~~~~~s~~~~~l~-~~  228 (244)
                      +|||+++++ +..++.|.+|++...                .++  .+..+....   .....+..++|+|||++|+ +.
T Consensus       195 spdg~~l~v~~~~~~~v~v~~~~~~----------------~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~  258 (347)
T 3hfq_A          195 SPDGQYAFLAGELSSQIASLKYDTQ----------------TGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSN  258 (347)
T ss_dssp             CTTSSEEEEEETTTTEEEEEEEETT----------------TTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEE
T ss_pred             CCCCCEEEEEeCCCCEEEEEEecCC----------------CCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEe
Confidence            999996665 456889999998421                122  122222210   0014588999999999774 55


Q ss_pred             eCCCcEEEEeCC
Q psy11529        229 SHDGSINVRMSQ  240 (244)
Q Consensus       229 ~~dg~i~vwd~~  240 (244)
                      ..++.|.+|++.
T Consensus       259 ~~~~~v~v~~~~  270 (347)
T 3hfq_A          259 RGYNTLAVFAVT  270 (347)
T ss_dssp             ETTTEEEEEEEC
T ss_pred             CCCCEEEEEEEC
Confidence            568999999986

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.93  E-value=2.7e-24  Score=177.89  Aligned_cols=197  Identities=14%  Similarity=0.152  Sum_probs=146.3

Q ss_pred             CCceEEEEEcCCCCeEEEecC-CC-----eEEEeeeccCCCcceeeeeeccC--C----------------------Cce
Q psy11529          9 INPVTTHAWNNTRQQLAFTPN-NQ-----EVHLYQYEKAANDWSQLDVLDGH--D----------------------LKV   58 (244)
Q Consensus         9 ~~~v~~~~~~~~~~~l~~~~~-d~-----~v~v~~~~~~~~~~~~~~~~~~~--~----------------------~~v   58 (244)
                      ...+.+++|+|||++|++++. |+     .|++||+.+  +  +....+..+  .                      ..|
T Consensus        36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~--g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  111 (741)
T 2ecf_A           36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGS--G--QTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGI  111 (741)
T ss_dssp             CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTT--C--CEEEEECGGGTC--------------------CCEES
T ss_pred             CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCC--C--ceeEccchhhcccccccccchhhhhhhhhhhccccCc
Confidence            567999999999999999988 88     899999987  4  333333322  2                      337


Q ss_pred             EEEEeCCCCCeEEEEeCCccEEEEeeeCCCC---CceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCC
Q psy11529         59 TGIDWAPNTNRIVTCSADRNAYVWTQNNDDK---KWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESEND  135 (244)
Q Consensus        59 ~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~  135 (244)
                      .+++|+|||++|++++. +.|.+||  +.++   ...   .+..+...+..++|+|||++|++++. +.|++||+.+++.
T Consensus       112 ~~~~~SpDg~~l~~~~~-~~i~~~d--~~~~~~~~~~---~l~~~~~~~~~~~~SPDG~~la~~~~-~~i~~~d~~~g~~  184 (741)
T 2ecf_A          112 VDYQWSPDAQRLLFPLG-GELYLYD--LKQEGKAAVR---QLTHGEGFATDAKLSPKGGFVSFIRG-RNLWVIDLASGRQ  184 (741)
T ss_dssp             CCCEECTTSSEEEEEET-TEEEEEE--SSSCSTTSCC---BCCCSSSCEEEEEECTTSSEEEEEET-TEEEEEETTTTEE
T ss_pred             ceeEECCCCCEEEEEeC-CcEEEEE--CCCCCcceEE---EcccCCcccccccCCCCCCEEEEEeC-CcEEEEecCCCCE
Confidence            89999999999999886 8999999  6666   422   23456678999999999999999874 5899999887643


Q ss_pred             ceEEEeeecCCCC----------------ceeEEEecCCCCEEEEeeCCC------------------------------
Q psy11529        136 WWVAKHIKKPIKS----------------TITCLDWHPNNHLLGCGSTDF------------------------------  169 (244)
Q Consensus       136 ~~~~~~~~~~~~~----------------~v~~~~~~p~~~~l~~~~~dg------------------------------  169 (244)
                          ......+..                .+..++|+|||++|++++.|+                              
T Consensus       185 ----~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~  260 (741)
T 2ecf_A          185 ----MQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDAN  260 (741)
T ss_dssp             ----EECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCC
T ss_pred             ----EEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCC
Confidence                222222222                147899999999999987665                              


Q ss_pred             ---eEEEEEeeecccccCCCCCCCCccccc-cceeEEec--CCCCCCCCeEEEEEecCCCEEEEeeC-----CCcEEEEe
Q psy11529        170 ---KVRVFSAYIKDIESAPQSTNWGSKSTL-GNCLVELN--NSSSGGGWIHSVAFSKDGNKLCWTSH-----DGSINVRM  238 (244)
Q Consensus       170 ---~i~i~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~v~~~~~s~~~~~l~~~~~-----dg~i~vwd  238 (244)
                         .|++||+                  .. ++......  .+   ...+..++| |||++|++++.     +..|++||
T Consensus       261 ~~~~l~~~d~------------------~~~~~~~~~~~~~~~---~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d  318 (741)
T 2ecf_A          261 VQVKLGVISP------------------AEQAQTQWIDLGKEQ---DIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVT  318 (741)
T ss_dssp             CEEEEEEECS------------------STTCCCEEECCCSCS---SEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEE
T ss_pred             CeeEEEEEEC------------------CCCCceEEecCCCCc---ceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEE
Confidence               6777776                  33 33332222  24   678999999 99999987654     56799999


Q ss_pred             CCCC
Q psy11529        239 SQQV  242 (244)
Q Consensus       239 ~~~~  242 (244)
                      +++.
T Consensus       319 ~~~g  322 (741)
T 2ecf_A          319 LASN  322 (741)
T ss_dssp             TTTC
T ss_pred             CCCC
Confidence            8753

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.93  E-value=1e-23  Score=163.84  Aligned_cols=166  Identities=15%  Similarity=0.142  Sum_probs=125.4

Q ss_pred             CCceEEEEEcCCCCeEE----EecCCCeEEEeeeccC-----C--CcceeeeeeccCCCceEEEEeCCC-CCeEEEEeCC
Q psy11529          9 INPVTTHAWNNTRQQLA----FTPNNQEVHLYQYEKA-----A--NDWSQLDVLDGHDLKVTGIDWAPN-TNRIVTCSAD   76 (244)
Q Consensus         9 ~~~v~~~~~~~~~~~l~----~~~~d~~v~v~~~~~~-----~--~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d   76 (244)
                      ...|.+++|+|+|++|+    +++.|+.|+|||+...     .  ..+.....+.+|...|.+++|+|+ +.+|++++.|
T Consensus        92 ~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~D  171 (434)
T 2oit_A           92 KFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLAD  171 (434)
T ss_dssp             SSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETT
T ss_pred             CCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECC
Confidence            46799999999999999    7889999999998651     0  011234566789999999999997 8899999999


Q ss_pred             ccEEEEeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeee---cCCCCceeEE
Q psy11529         77 RNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIK---KPIKSTITCL  153 (244)
Q Consensus        77 ~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---~~~~~~v~~~  153 (244)
                      ++|++||  ++++.  .......|...+.+++|+|+|++|++|+.|+.|++||.+ ++.........   ..|...+.++
T Consensus       172 g~v~iwD--~~~~~--~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v  246 (434)
T 2oit_A          172 GSIAVLQ--VTETV--KVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDV  246 (434)
T ss_dssp             SCEEEEE--ESSSE--EEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEE
T ss_pred             CeEEEEE--cCCCc--ceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEE
Confidence            9999999  56653  233445678899999999999999999999999999988 33211110000   0123489999


Q ss_pred             EecCCCCEEEE-eeCCC------eEEEEEeeec
Q psy11529        154 DWHPNNHLLGC-GSTDF------KVRVFSAYIK  179 (244)
Q Consensus       154 ~~~p~~~~l~~-~~~dg------~i~i~d~~~~  179 (244)
                      +|++++.++++ .+.+|      .+++|+++..
T Consensus       247 ~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~  279 (434)
T 2oit_A          247 LWIGTYVFAIVYAAADGTLETSPDVVMALLPKK  279 (434)
T ss_dssp             EEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred             EEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence            99998877754 33443      3899999643

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.92  E-value=1.1e-24  Score=179.60  Aligned_cols=202  Identities=10%  Similarity=0.071  Sum_probs=143.4

Q ss_pred             CceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCC---ceEEEEeCCCCCeEEEEeCC---------c
Q psy11529         10 NPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDL---KVTGIDWAPNTNRIVTCSAD---------R   77 (244)
Q Consensus        10 ~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~~~~~d---------~   77 (244)
                      ..+.+++|+|||+++++ +.||.|++||+.+  +  +....+..|..   .|.+++|||||++|++++.+         +
T Consensus        17 ~~~~~~~~spdg~~~~~-~~dg~i~~~d~~~--g--~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~   91 (723)
T 1xfd_A           17 IHDPEAKWISDTEFIYR-EQKGTVRLWNVET--N--TSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTG   91 (723)
T ss_dssp             CCCCCCCBSSSSCBCCC-CSSSCEEEBCGGG--C--CCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCS
T ss_pred             ccccccEEcCCCcEEEE-eCCCCEEEEECCC--C--cEEEEeccccccccccceEEECCCCCEEEEEecCccceeeccee
Confidence            34678999999997766 6789999999987  4  44455565554   49999999999999998764         7


Q ss_pred             cEEEEeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCC---------
Q psy11529         78 NAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKS---------  148 (244)
Q Consensus        78 ~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~---------  148 (244)
                      .+.+||  +.+++.........+...+..++|+|||+.|++++. +.|++||+.+++.    ......+..         
T Consensus        92 ~i~~~d--~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~----~~~~~~~~~~~~~~g~~~  164 (723)
T 1xfd_A           92 YYVLSK--IPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQA----IRVVSTGKEGVIYNGLSD  164 (723)
T ss_dssp             EEEEEE--SSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCC----EEEECCCBTTTEEEEECC
T ss_pred             eEEEEE--CCCCceEeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCce----EEEecCCCCCceECcccc
Confidence            888999  777764222211223445889999999999999886 7899999988765    222222222         


Q ss_pred             ---------ceeEEEecCCCCEEEEeeCCC----------------------------------eEEEEEeeecccccCC
Q psy11529        149 ---------TITCLDWHPNNHLLGCGSTDF----------------------------------KVRVFSAYIKDIESAP  185 (244)
Q Consensus       149 ---------~v~~~~~~p~~~~l~~~~~dg----------------------------------~i~i~d~~~~~~~~~~  185 (244)
                               .+.+++|+|||++|++++.++                                  .|++||+         
T Consensus       165 ~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~---------  235 (723)
T 1xfd_A          165 WLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGL---------  235 (723)
T ss_dssp             HHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEES---------
T ss_pred             eeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEEC---------
Confidence                     237899999999999887543                                  5666666         


Q ss_pred             CCCCCCccccccceeEEecCCC---CCCCCeEEEEEecCCCEEEEeeC----CCcEEEEeCCC
Q psy11529        186 QSTNWGSKSTLGNCLVELNNSS---SGGGWIHSVAFSKDGNKLCWTSH----DGSINVRMSQQ  241 (244)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~s~~~~~l~~~~~----dg~i~vwd~~~  241 (244)
                               ..++....+..+.   .....+..++|||||++|++.+.    +..|++||+.+
T Consensus       236 ---------~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~  289 (723)
T 1xfd_A          236 ---------NGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATT  289 (723)
T ss_dssp             ---------SSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTT
T ss_pred             ---------CCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCC
Confidence                     2333323333210   00457889999999998877653    35799999865

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.92  E-value=3.4e-23  Score=152.71  Aligned_cols=192  Identities=13%  Similarity=0.106  Sum_probs=142.0

Q ss_pred             CceEEEEEcCCCCeEEEec--CCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEE-EEeCCccEEEEeeeC
Q psy11529         10 NPVTTHAWNNTRQQLAFTP--NNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIV-TCSADRNAYVWTQNN   86 (244)
Q Consensus        10 ~~v~~~~~~~~~~~l~~~~--~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~iwd~~~   86 (244)
                      ..+.+++|+|++++|++++  .++...||.++...+   ....+..+ ..+..++|+|++++|+ +++.++.+.+|+++.
T Consensus        85 ~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~---~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~  160 (297)
T 2ojh_A           85 ICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGG---TPRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDI  160 (297)
T ss_dssp             CBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCC---CCEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEET
T ss_pred             ccccceEECCCCCEEEEEEeCCCCcceEEEEECCCC---ceEEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEEC
Confidence            6788899999999999988  334566665532112   33444433 3488999999999887 677899999999655


Q ss_pred             CCCCceeeEEEeccCcceEEEEECCCCCeEEEee-CCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEe
Q psy11529         87 DDKKWKPTLVLLRINRAATCVKWSPLENKFAAGS-GARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCG  165 (244)
Q Consensus        87 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~  165 (244)
                      .++.   ...+..+...+.+++|+|+++.|++++ .++.+++|+++....   .......+...+..++|+|+|++|+++
T Consensus       161 ~~~~---~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~---~~~~~~~~~~~~~~~~~s~dg~~l~~~  234 (297)
T 2ojh_A          161 DSGV---ETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGS---SVERITDSAYGDWFPHPSPSGDKVVFV  234 (297)
T ss_dssp             TTCC---EEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSS---CEEECCCCSEEEEEEEECTTSSEEEEE
T ss_pred             CCCc---ceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCC---CcEEEecCCcccCCeEECCCCCEEEEE
Confidence            5544   234455677899999999999888766 589999999984433   133445566788999999999999888


Q ss_pred             eCC-----------CeEEEEEeeecccccCCCCCCCCccccccce--eEEecCCCCCCCCeEEEEEecCCCEEEEeeCCC
Q psy11529        166 STD-----------FKVRVFSAYIKDIESAPQSTNWGSKSTLGNC--LVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDG  232 (244)
Q Consensus       166 ~~d-----------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg  232 (244)
                      +.+           +.|++||+                  ..++.  +..+..|   ...+..++|+|+|++|++++.+.
T Consensus       235 ~~~~~~~~~~~~~~~~l~~~d~------------------~~~~~~~~~~~~~~---~~~~~~~~~spdg~~l~~~~~~~  293 (297)
T 2ojh_A          235 SYDADVFDHPRDLDVRVQLMDM------------------DGGNVETLFDLFGG---QGTMNSPNWSPDGDEFAYVRYFP  293 (297)
T ss_dssp             EEETTCCSCCSSEEEEEEEEET------------------TSCSCEEEEEEEES---TTTSCSCCBCTTSSEEEEEEECC
T ss_pred             EcCCCCCcccccCceEEEEEec------------------CCCCceeeeccCCC---CcccccceECCCCCEEEEEEecc
Confidence            765           56999998                  33333  4444466   77899999999999998887654

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.91  E-value=1.5e-23  Score=173.44  Aligned_cols=199  Identities=15%  Similarity=0.149  Sum_probs=146.7

Q ss_pred             ceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCCCCC
Q psy11529         11 PVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKK   90 (244)
Q Consensus        11 ~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~   90 (244)
                      .|.+++|||||++|++++. +.|++|++.+  +.......+..|...+..++|+|||++|++++ ++.|++||  +.+++
T Consensus       110 ~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~--~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d--~~~g~  183 (741)
T 2ecf_A          110 GIVDYQWSPDAQRLLFPLG-GELYLYDLKQ--EGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVID--LASGR  183 (741)
T ss_dssp             ESCCCEECTTSSEEEEEET-TEEEEEESSS--CSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEE--TTTTE
T ss_pred             CcceeEECCCCCEEEEEeC-CcEEEEECCC--CCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEe--cCCCC
Confidence            4789999999999999886 9999999987  30004556777888999999999999999887 56899999  66665


Q ss_pred             ceeeEEEeccCc----------------ceEEEEECCCCCeEEEeeCCC-------------------------------
Q psy11529         91 WKPTLVLLRINR----------------AATCVKWSPLENKFAAGSGAR-------------------------------  123 (244)
Q Consensus        91 ~~~~~~~~~~~~----------------~v~~~~~~~~~~~l~~~~~d~-------------------------------  123 (244)
                      .....  ..+..                .+..++|+|||++|++++.|+                               
T Consensus       184 ~~~~~--~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~  261 (741)
T 2ecf_A          184 QMQLT--ADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANV  261 (741)
T ss_dssp             EEECC--CCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCC
T ss_pred             EEEec--cCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCC
Confidence            32221  11211                147899999999999987665                               


Q ss_pred             --eEEEEEeec-CCCceEEEeeecCCCCceeEEEecCCCCEEEEeeC-----CCeEEEEEeeecccccCCCCCCCCcccc
Q psy11529        124 --LISVCYFES-ENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGST-----DFKVRVFSAYIKDIESAPQSTNWGSKST  195 (244)
Q Consensus       124 --~i~i~d~~~-~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~-----dg~i~i~d~~~~~~~~~~~~~~~~~~~~  195 (244)
                        .|.+||+++ ++.  ........+...+..++| |||++|++++.     +..|++||+                  .
T Consensus       262 ~~~l~~~d~~~~~~~--~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~------------------~  320 (741)
T 2ecf_A          262 QVKLGVISPAEQAQT--QWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTL------------------A  320 (741)
T ss_dssp             EEEEEEECSSTTCCC--EEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEET------------------T
T ss_pred             eeEEEEEECCCCCce--EEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEEC------------------C
Confidence              778888877 654  111111246678999999 99999887654     568999998                  4


Q ss_pred             ccceeEEecCCCCCCC---CeEEEEEecCCCEEEEeeCCCcEEEEeCC
Q psy11529        196 LGNCLVELNNSSSGGG---WIHSVAFSKDGNKLCWTSHDGSINVRMSQ  240 (244)
Q Consensus       196 ~~~~~~~~~~~~~~~~---~v~~~~~s~~~~~l~~~~~dg~i~vwd~~  240 (244)
                      +++....+..+.  ..   .+..++|+|||+++++++.||.+.||.++
T Consensus       321 ~g~~~~~~~~~~--~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~  366 (741)
T 2ecf_A          321 SNQQRVLAHETS--PTWVPLHNSLRFLDDGSILWSSERTGFQHLYRID  366 (741)
T ss_dssp             TCCEEEEEEEEC--SSCCCCCSCCEECTTSCEEEEECTTSSCEEEEEC
T ss_pred             CCceEEEEEcCC--CCcCCcCCceEECCCCeEEEEecCCCccEEEEEc
Confidence            555555554431  12   45689999999999999999988887654

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.91  E-value=8.8e-22  Score=156.94  Aligned_cols=202  Identities=7%  Similarity=0.052  Sum_probs=150.5

Q ss_pred             ceEEEEEcCCCCeEEEecCCCeEEEeee--ccCCCcceeeeeeccCCCceEEEEeCC----CCCeEEEEeC-CccEEEEe
Q psy11529         11 PVTTHAWNNTRQQLAFTPNNQEVHLYQY--EKAANDWSQLDVLDGHDLKVTGIDWAP----NTNRIVTCSA-DRNAYVWT   83 (244)
Q Consensus        11 ~v~~~~~~~~~~~l~~~~~d~~v~v~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~l~~~~~-d~~i~iwd   83 (244)
                      .+..++|+|||++|++++.|+.|.+||+  .+  .  +.+..+. +...+..++|+|    +|+++++++. +++|.+||
T Consensus       180 ~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t--~--~~~~~i~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D  254 (543)
T 1nir_A          180 AVHISRMSASGRYLLVIGRDARIDMIDLWAKE--P--TKVAEIK-IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMD  254 (543)
T ss_dssp             TEEEEEECTTSCEEEEEETTSEEEEEETTSSS--C--EEEEEEE-CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEE
T ss_pred             ccceEEECCCCCEEEEECCCCeEEEEECcCCC--C--cEEEEEe-cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEe
Confidence            4889999999999999999999999999  44  3  6677777 456679999999    9999998875 89999999


Q ss_pred             eeCCCCCceeeEEEec--------c-CcceEEEEECCCCCe-EEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEE
Q psy11529         84 QNNDDKKWKPTLVLLR--------I-NRAATCVKWSPLENK-FAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCL  153 (244)
Q Consensus        84 ~~~~~~~~~~~~~~~~--------~-~~~v~~~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~  153 (244)
                        ..+++....+...+        | ...+..+.++|++.. +++...++.|.+||+...+...   .....+...+.++
T Consensus       255 --~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~---~~~i~~~~~~~~~  329 (543)
T 1nir_A          255 --GETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLT---VTSIGAAPFLHDG  329 (543)
T ss_dssp             --TTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCE---EEEEECCSSCCCE
T ss_pred             --ccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcce---eEEeccCcCccCc
Confidence              77877655544321        2 236889999998665 5566678999999998866422   1112244678899


Q ss_pred             EecCCCCEEEEee-CCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCC-CCCCCeEEEEEecC-CCEEEEee-
Q psy11529        154 DWHPNNHLLGCGS-TDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSS-SGGGWIHSVAFSKD-GNKLCWTS-  229 (244)
Q Consensus       154 ~~~p~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~-~~~l~~~~-  229 (244)
                      .|+|+|+++++++ .+++|.+||+                  .+++++..+.... .+.+....+ ++|+ +.+++++. 
T Consensus       330 ~~spdg~~l~va~~~~~~v~v~D~------------------~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~  390 (543)
T 1nir_A          330 GWDSSHRYFMTAANNSNKVAVIDS------------------KDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHL  390 (543)
T ss_dssp             EECTTSCEEEEEEGGGTEEEEEET------------------TTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBS
T ss_pred             eECCCCCEEEEEecCCCeEEEEEC------------------CCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccC
Confidence            9999999776554 5889999999                  6677777776410 003333333 4787 66677765 


Q ss_pred             CCCcEEEEeCCC
Q psy11529        230 HDGSINVRMSQQ  241 (244)
Q Consensus       230 ~dg~i~vwd~~~  241 (244)
                      .|++|.+||+.+
T Consensus       391 ~d~~V~v~d~~~  402 (543)
T 1nir_A          391 GDGSISLIGTDP  402 (543)
T ss_dssp             SSSEEEEEECCT
T ss_pred             CCceEEEEEeCC
Confidence            589999999876

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.91  E-value=9.4e-22  Score=148.85  Aligned_cols=202  Identities=13%  Similarity=0.047  Sum_probs=148.6

Q ss_pred             CceEEEEEcCCCCeEE-EecCCCeEEEeeeccCCCcceeeeeeccCCC---------ceEEEEeCCCCCeEEEEe--CCc
Q psy11529         10 NPVTTHAWNNTRQQLA-FTPNNQEVHLYQYEKAANDWSQLDVLDGHDL---------KVTGIDWAPNTNRIVTCS--ADR   77 (244)
Q Consensus        10 ~~v~~~~~~~~~~~l~-~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~---------~v~~~~~~~~~~~l~~~~--~d~   77 (244)
                      ..+..++|+|+|++++ +...++.|.+||..+  +  +....+..+..         .+.+++|+|+++++++++  .++
T Consensus        89 ~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~  164 (353)
T 3vgz_A           89 LKPFGATINNTTQTLWFGNTVNSAVTAIDAKT--G--EVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKES  164 (353)
T ss_dssp             SCCCSEEEETTTTEEEEEETTTTEEEEEETTT--C--CEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSC
T ss_pred             CCcceEEECCCCCEEEEEecCCCEEEEEeCCC--C--eeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCc
Confidence            4567899999999655 445579999999977  4  44455544322         278899999999887765  478


Q ss_pred             cEEEEeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecC
Q psy11529         78 NAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHP  157 (244)
Q Consensus        78 ~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p  157 (244)
                      .|.+||  ..+++....  +..+...+.+++|+|+++++++++.++.+.+||..+.+...........+...+..++|+|
T Consensus       165 ~i~~~d--~~~~~~~~~--~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~  240 (353)
T 3vgz_A          165 VIWVVD--GGNIKLKTA--IQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDT  240 (353)
T ss_dssp             EEEEEE--TTTTEEEEE--ECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEET
T ss_pred             eEEEEc--CCCCceEEE--ecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECC
Confidence            899999  777664322  2224455889999999999999999999999999887642222111122445678899999


Q ss_pred             CCCEEEEeeC-CCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEee-CCCcEE
Q psy11529        158 NNHLLGCGST-DFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTS-HDGSIN  235 (244)
Q Consensus       158 ~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~  235 (244)
                      +++++++++. ++.|.+||+                  .+++.+..+...   . + ..++|+|+|++++.++ .++.|.
T Consensus       241 dg~~l~~~~~~~~~v~~~d~------------------~~~~~~~~~~~~---~-~-~~~~~s~dg~~l~v~~~~~~~v~  297 (353)
T 3vgz_A          241 ARQRAFITDSKAAEVLVVDT------------------RNGNILAKVAAP---E-S-LAVLFNPARNEAYVTHRQAGKVS  297 (353)
T ss_dssp             TTTEEEEEESSSSEEEEEET------------------TTCCEEEEEECS---S-C-CCEEEETTTTEEEEEETTTTEEE
T ss_pred             CCCEEEEEeCCCCEEEEEEC------------------CCCcEEEEEEcC---C-C-ceEEECCCCCEEEEEECCCCeEE
Confidence            9997776665 589999998                  567777766653   2 2 5699999999665555 689999


Q ss_pred             EEeCCCC
Q psy11529        236 VRMSQQV  242 (244)
Q Consensus       236 vwd~~~~  242 (244)
                      +||+.+.
T Consensus       298 ~~d~~~~  304 (353)
T 3vgz_A          298 VIDAKSY  304 (353)
T ss_dssp             EEETTTT
T ss_pred             EEECCCC
Confidence            9998753

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.91  E-value=8.3e-22  Score=149.15  Aligned_cols=205  Identities=11%  Similarity=-0.001  Sum_probs=151.2

Q ss_pred             CCceEEEEEcCCCCeEEEecC-------CCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEE-eCCccEE
Q psy11529          9 INPVTTHAWNNTRQQLAFTPN-------NQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTC-SADRNAY   80 (244)
Q Consensus         9 ~~~v~~~~~~~~~~~l~~~~~-------d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~   80 (244)
                      ...+..++|+|+++++++++.       ++.|.+||..+  +  +....+.. ...+..++|+|++++++.+ ..++.|.
T Consensus        40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~--~--~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~v~  114 (353)
T 3vgz_A           40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVT--L--EVTQAIHN-DLKPFGATINNTTQTLWFGNTVNSAVT  114 (353)
T ss_dssp             ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTT--C--CEEEEEEE-SSCCCSEEEETTTTEEEEEETTTTEEE
T ss_pred             ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCC--C--eEEEEEec-CCCcceEEECCCCCEEEEEecCCCEEE
Confidence            456789999999998887763       56899999977  4  45555543 4457789999999966554 5579999


Q ss_pred             EEeeeCCCCCceeeEEEeccC-------cceEEEEECCCCCeEEEee--CCCeEEEEEeecCCCceEEEeeecCCCCcee
Q psy11529         81 VWTQNNDDKKWKPTLVLLRIN-------RAATCVKWSPLENKFAAGS--GARLISVCYFESENDWWVAKHIKKPIKSTIT  151 (244)
Q Consensus        81 iwd~~~~~~~~~~~~~~~~~~-------~~v~~~~~~~~~~~l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~  151 (244)
                      +||  ..+++...........       ..+.+++|+|+++++++++  .++.|.+||.++.+.    ......+...+.
T Consensus       115 ~~d--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~----~~~~~~~~~~~~  188 (353)
T 3vgz_A          115 AID--AKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKL----KTAIQNTGKMST  188 (353)
T ss_dssp             EEE--TTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEE----EEEECCCCTTCC
T ss_pred             EEe--CCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCce----EEEecCCCCccc
Confidence            999  7787754444321111       1268899999999887776  478899999987754    223332445688


Q ss_pred             EEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCC-CCCCeEEEEEecCCCEEEEeeC
Q psy11529        152 CLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSS-GGGWIHSVAFSKDGNKLCWTSH  230 (244)
Q Consensus       152 ~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~  230 (244)
                      .++|+|+++++++++.++.|.+||+                  .+++....+..... ....+..++|+|+|++|+.++.
T Consensus       189 ~~~~s~dg~~l~~~~~~~~i~~~d~------------------~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~  250 (353)
T 3vgz_A          189 GLALDSEGKRLYTTNADGELITIDT------------------ADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDS  250 (353)
T ss_dssp             CCEEETTTTEEEEECTTSEEEEEET------------------TTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEES
T ss_pred             eEEECCCCCEEEEEcCCCeEEEEEC------------------CCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeC
Confidence            9999999999999999999999998                  55666665554100 0556888999999997776664


Q ss_pred             -CCcEEEEeCCCC
Q psy11529        231 -DGSINVRMSQQV  242 (244)
Q Consensus       231 -dg~i~vwd~~~~  242 (244)
                       ++.|.+||+++.
T Consensus       251 ~~~~v~~~d~~~~  263 (353)
T 3vgz_A          251 KAAEVLVVDTRNG  263 (353)
T ss_dssp             SSSEEEEEETTTC
T ss_pred             CCCEEEEEECCCC
Confidence             589999999764

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.91  E-value=5.5e-22  Score=158.14  Aligned_cols=195  Identities=9%  Similarity=-0.001  Sum_probs=146.8

Q ss_pred             EEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeC--CCCCcee
Q psy11529         16 AWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNN--DDKKWKP   93 (244)
Q Consensus        16 ~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~--~~~~~~~   93 (244)
                      +++|++..+++++.++.|.+||..+  +  +.+.++..+.. +..++|+|+|++|++++.|+.|.+||  +  .+++...
T Consensus       144 ~~~p~~~~~vs~~~d~~V~v~D~~t--~--~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D--~~~~t~~~~~  216 (543)
T 1nir_A          144 DLDLPNLFSVTLRDAGQIALVDGDS--K--KIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMID--LWAKEPTKVA  216 (543)
T ss_dssp             CCCGGGEEEEEEGGGTEEEEEETTT--C--CEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEE--TTSSSCEEEE
T ss_pred             ccCCCCEEEEEEcCCCeEEEEECCC--c--eEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEE--CcCCCCcEEE
Confidence            4889999999999999999999977  4  66777773333 88999999999999999999999999  6  5555332


Q ss_pred             eEEEeccCcceEEEEECC----CCCeEEEeeC-CCeEEEEEeecCCCceEEEeeec-------CCCCceeEEEecCCCC-
Q psy11529         94 TLVLLRINRAATCVKWSP----LENKFAAGSG-ARLISVCYFESENDWWVAKHIKK-------PIKSTITCLDWHPNNH-  160 (244)
Q Consensus        94 ~~~~~~~~~~v~~~~~~~----~~~~l~~~~~-d~~i~i~d~~~~~~~~~~~~~~~-------~~~~~v~~~~~~p~~~-  160 (244)
                        .+. ....+..++|+|    +|+++++++. +++|.+||..+.+..........       .....+..+.++|++. 
T Consensus       217 --~i~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~  293 (543)
T 1nir_A          217 --EIK-IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPE  293 (543)
T ss_dssp             --EEE-CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSE
T ss_pred             --EEe-cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCE
Confidence              222 456789999999    9999999885 89999999888765222211100       0123788999999776 


Q ss_pred             EEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeE--EecCCCCCCCCeEEEEEecCCCEEEEee-CCCcEEEE
Q psy11529        161 LLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLV--ELNNSSSGGGWIHSVAFSKDGNKLCWTS-HDGSINVR  237 (244)
Q Consensus       161 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~vw  237 (244)
                      ++++...++.|.+||+.                  ..+.+.  .+. +   ...+..++|+|+|++|++++ .+++|.+|
T Consensus       294 ~~vs~~~~g~i~vvd~~------------------~~~~l~~~~i~-~---~~~~~~~~~spdg~~l~va~~~~~~v~v~  351 (543)
T 1nir_A          294 FIVNVKETGKVLLVNYK------------------DIDNLTVTSIG-A---APFLHDGGWDSSHRYFMTAANNSNKVAVI  351 (543)
T ss_dssp             EEEEETTTTEEEEEECT------------------TSSSCEEEEEE-C---CSSCCCEEECTTSCEEEEEEGGGTEEEEE
T ss_pred             EEEEECCCCeEEEEEec------------------CCCcceeEEec-c---CcCccCceECCCCCEEEEEecCCCeEEEE
Confidence            55666778999999983                  322222  333 3   56688999999999876554 68999999


Q ss_pred             eCCCC
Q psy11529        238 MSQQV  242 (244)
Q Consensus       238 d~~~~  242 (244)
                      |+++.
T Consensus       352 D~~tg  356 (543)
T 1nir_A          352 DSKDR  356 (543)
T ss_dssp             ETTTT
T ss_pred             ECCCC
Confidence            99763

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.91  E-value=9.3e-21  Score=144.09  Aligned_cols=213  Identities=11%  Similarity=0.083  Sum_probs=143.2

Q ss_pred             CCCceEEEEEcCCCCeEEEecCC----CeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEe-CCccEEEE
Q psy11529          8 GINPVTTHAWNNTRQQLAFTPNN----QEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCS-ADRNAYVW   82 (244)
Q Consensus         8 ~~~~v~~~~~~~~~~~l~~~~~d----~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iw   82 (244)
                      +...+..++|+|||++|++++.+    +.|.+|++....+..+.+.....+......+++  ++++|++++ .++.+.+|
T Consensus        48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~  125 (361)
T 3scy_A           48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVF  125 (361)
T ss_dssp             ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEE
T ss_pred             cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEE
Confidence            34566778999999999888775    799999987532333455555555667778888  788777766 57899999


Q ss_pred             eeeCCC-CCceeeEEEec-----------cCcceEEEEECCCCCeEEEee-CCCeEEEEEeecCCC------ceEE---E
Q psy11529         83 TQNNDD-KKWKPTLVLLR-----------INRAATCVKWSPLENKFAAGS-GARLISVCYFESEND------WWVA---K  140 (244)
Q Consensus        83 d~~~~~-~~~~~~~~~~~-----------~~~~v~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~------~~~~---~  140 (244)
                      +  +.. +..........           ....+.+++|+|+|+++++++ .++.+.+|+++....      ....   .
T Consensus       126 ~--~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~  203 (361)
T 3scy_A          126 P--IGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPE  203 (361)
T ss_dssp             E--BCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEE
T ss_pred             E--eCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeeccccc
Confidence            9  443 22211111111           122357899999999776655 488999999986542      1111   2


Q ss_pred             eeecCCCCceeEEEecCCCCEEEEee-CCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEe
Q psy11529        141 HIKKPIKSTITCLDWHPNNHLLGCGS-TDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFS  219 (244)
Q Consensus       141 ~~~~~~~~~v~~~~~~p~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  219 (244)
                      .........+..++|+|+|+++++++ .++.|.+||+.....                +.+..+............++|+
T Consensus       204 ~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~----------------~~~~~~~~~~~~~~~~~~i~~s  267 (361)
T 3scy_A          204 AFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGML----------------DEIQTVAADTVNAQGSGDIHLS  267 (361)
T ss_dssp             EEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEE----------------EEEEEEESCSSCCCCEEEEEEC
T ss_pred             ceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCce----------------EEeEEEecCCCCCCCcccEEEC
Confidence            22334446678999999999887777 589999999842211                1122222211004557899999


Q ss_pred             cCCCEEEEeeC--CCcEEEEeCC
Q psy11529        220 KDGNKLCWTSH--DGSINVRMSQ  240 (244)
Q Consensus       220 ~~~~~l~~~~~--dg~i~vwd~~  240 (244)
                      |||++|+++..  ++.|.+|++.
T Consensus       268 pdg~~l~v~~~~~~~~i~v~~~~  290 (361)
T 3scy_A          268 PDGKYLYASNRLKADGVAIFKVD  290 (361)
T ss_dssp             TTSSEEEEEECSSSCEEEEEEEC
T ss_pred             CCCCEEEEECCCCCCEEEEEEEc
Confidence            99998876665  4899999985

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.91  E-value=5.1e-22  Score=149.28  Aligned_cols=197  Identities=10%  Similarity=0.026  Sum_probs=144.5

Q ss_pred             ceEEEEEcCCCCeE-EEecCCCeEEEeeeccCCCcceeeeeecc-C----CCceEEEEeCCCCCeEEEEe----------
Q psy11529         11 PVTTHAWNNTRQQL-AFTPNNQEVHLYQYEKAANDWSQLDVLDG-H----DLKVTGIDWAPNTNRIVTCS----------   74 (244)
Q Consensus        11 ~v~~~~~~~~~~~l-~~~~~d~~v~v~~~~~~~~~~~~~~~~~~-~----~~~v~~~~~~~~~~~l~~~~----------   74 (244)
                      .+..++|+|+|+++ +++..++.|.+||+.+  +  +....+.. +    ...+.+++|+|+|++++++.          
T Consensus        35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~--~--~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~  110 (337)
T 1pby_B           35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVT--G--ETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHF  110 (337)
T ss_dssp             CCCCEEECTTSSEEEEEETTTTEEEEEETTT--C--CEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCE
T ss_pred             CccceEEcCCCCEEEEEeCCCCeEEEEECCC--C--CeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccc
Confidence            57899999999865 4556678999999976  4  34444432 1    22577899999999988885          


Q ss_pred             --CCccEEEEeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEee----------
Q psy11529         75 --ADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHI----------  142 (244)
Q Consensus        75 --~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~----------  142 (244)
                        .++.|.+||  ..+++.....   .....+.+++|+|++++|+++  ++.+.+||+.+++........          
T Consensus       111 ~~~~~~i~v~d--~~~~~~~~~~---~~~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~  183 (337)
T 1pby_B          111 EVQPTRVALYD--AETLSRRKAF---EAPRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWEAETYAQP  183 (337)
T ss_dssp             EECCCEEEEEE--TTTTEEEEEE---ECCSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTTTTTTBCCC
T ss_pred             cccCceEEEEE--CCCCcEEEEE---eCCCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeeccccCCCceeCC
Confidence              579999999  7776543332   234567889999999988887  678999998765431100000          


Q ss_pred             ----------------------------------------------------ecCCCCceeEEEecCCCCEEEEeeCCCe
Q psy11529        143 ----------------------------------------------------KKPIKSTITCLDWHPNNHLLGCGSTDFK  170 (244)
Q Consensus       143 ----------------------------------------------------~~~~~~~v~~~~~~p~~~~l~~~~~dg~  170 (244)
                                                                          ..++...+.+++|+|++++++++  ++.
T Consensus       184 dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~  261 (337)
T 1pby_B          184 DVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNV  261 (337)
T ss_dssp             BCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESE
T ss_pred             CccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCe
Confidence                                                                00111234568999999998887  689


Q ss_pred             EEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCCC
Q psy11529        171 VRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQV  242 (244)
Q Consensus       171 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~  242 (244)
                      |.+||+                  .+++.+..+..    ...+.+++|+|+|++|++++.++.|.+||+++.
T Consensus       262 v~~~d~------------------~~~~~~~~~~~----~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~  311 (337)
T 1pby_B          262 LESFDL------------------EKNASIKRVPL----PHSYYSVNVSTDGSTVWLGGALGDLAAYDAETL  311 (337)
T ss_dssp             EEEEET------------------TTTEEEEEEEC----SSCCCEEEECTTSCEEEEESBSSEEEEEETTTC
T ss_pred             EEEEEC------------------CCCcCcceecC----CCceeeEEECCCCCEEEEEcCCCcEEEEECcCC
Confidence            999998                  56666666665    456789999999999998889999999999764

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.91  E-value=1e-22  Score=174.02  Aligned_cols=193  Identities=8%  Similarity=0.012  Sum_probs=158.1

Q ss_pred             CceEEEEEc-CCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCC-ceEEEEeCCCCCeEEEEeCCccEE-EEeeeC
Q psy11529         10 NPVTTHAWN-NTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDL-KVTGIDWAPNTNRIVTCSADRNAY-VWTQNN   86 (244)
Q Consensus        10 ~~v~~~~~~-~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~d~~i~-iwd~~~   86 (244)
                      ..+.+++|+ |||++|++++ ++.|++|++..  +   ....+..|.. .+..++|+ +|+.|++++.+..+. +||  .
T Consensus       296 ~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~--~---~~~~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d--~  366 (1045)
T 1k32_A          296 PSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSG--T---YVLKVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYD--Y  366 (1045)
T ss_dssp             GGGGEEEEEECGGGCEEEEE-TTEEEEECTTS--S---BEEECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEE--T
T ss_pred             cccceeeecCCCCCEEEEEE-cCEEEEEcCCC--C---ceEEccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEE--C
Confidence            468999999 9999999887 78999999877  3   3344666777 89999999 999999998888888 889  6


Q ss_pred             CCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEee
Q psy11529         87 DDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGS  166 (244)
Q Consensus        87 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~  166 (244)
                      .+++..   .+..+...+..++|+|+|++|++++.++.+++||+.+++.    ......+...+..++|+|||++|++++
T Consensus       367 ~~~~~~---~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~----~~~~~~~~~~v~~~~~SpDG~~la~~~  439 (1045)
T 1k32_A          367 RTGKAE---KFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKP----TVIERSREAMITDFTISDNSRFIAYGF  439 (1045)
T ss_dssp             TTCCEE---ECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCE----EEEEECSSSCCCCEEECTTSCEEEEEE
T ss_pred             CCCCce---EecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCce----EEeccCCCCCccceEECCCCCeEEEEe
Confidence            666532   2335677899999999999999999999999999988764    334446778889999999999998887


Q ss_pred             CCC----------eEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEE
Q psy11529        167 TDF----------KVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINV  236 (244)
Q Consensus       167 ~dg----------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v  236 (244)
                      .++          .|++||+                  ..++ ...+..|   ...+..++|+|||++|++++.++...+
T Consensus       440 ~~~~~~~~~~~~~~i~l~d~------------------~~g~-~~~l~~~---~~~~~~~~~spdG~~l~~~s~~~~~~~  497 (1045)
T 1k32_A          440 PLKHGETDGYVMQAIHVYDM------------------EGRK-IFAATTE---NSHDYAPAFDADSKNLYYLSYRSLDPS  497 (1045)
T ss_dssp             EECSSTTCSCCEEEEEEEET------------------TTTE-EEECSCS---SSBEEEEEECTTSCEEEEEESCCCCCE
T ss_pred             cCccccccCCCCCeEEEEEC------------------CCCc-EEEeeCC---CcccCCceEcCCCCEEEEEecccCCcC
Confidence            644          8999998                  4444 5566666   777899999999999999999888888


Q ss_pred             EeCC
Q psy11529        237 RMSQ  240 (244)
Q Consensus       237 wd~~  240 (244)
                      |+..
T Consensus       498 ~~~~  501 (1045)
T 1k32_A          498 PDRV  501 (1045)
T ss_dssp             ECSS
T ss_pred             cchh
Confidence            8754

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.91  E-value=3e-21  Score=144.98  Aligned_cols=208  Identities=12%  Similarity=0.081  Sum_probs=139.2

Q ss_pred             CCCceEEEEEcCCCCeEEEecCCC---eEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEE-eCCcc-EEEE
Q psy11529          8 GINPVTTHAWNNTRQQLAFTPNNQ---EVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTC-SADRN-AYVW   82 (244)
Q Consensus         8 ~~~~v~~~~~~~~~~~l~~~~~d~---~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~-i~iw   82 (244)
                      +..+..+++|+|+|++++++..++   .|.+||+..  +  +.+..+.. .....+++|+|+|++++++ ..++. +.+|
T Consensus        82 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~--~--~~~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~i~~~  156 (331)
T 3u4y_A           82 GQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLK--N--KFISTIPI-PYDAVGIAISPNGNGLILIDRSSANTVRRF  156 (331)
T ss_dssp             CSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTT--T--EEEEEEEC-CTTEEEEEECTTSSCEEEEEETTTTEEEEE
T ss_pred             CCCCccceEECCCCCEEEEecCCCCcccEEEEECCC--C--CeEEEEEC-CCCccceEECCCCCEEEEEecCCCceEEEE
Confidence            345555599999999998665553   899999977  4  55555553 4556899999999866655 45578 9999


Q ss_pred             eeeCCCCCceee-EEEeccCcceEEEEECCCCCeEEEee-CCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCC
Q psy11529         83 TQNNDDKKWKPT-LVLLRINRAATCVKWSPLENKFAAGS-GARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNH  160 (244)
Q Consensus        83 d~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~  160 (244)
                      +++ ..+..... .........+..++|+|+++++++++ .++.|.+||+++++.........  ....+..++|+|+|+
T Consensus       157 ~~~-~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~--~~~~~~~~~~spdg~  233 (331)
T 3u4y_A          157 KID-ADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVG--TNNLPGTIVVSRDGS  233 (331)
T ss_dssp             EEC-TTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEE--CSSCCCCEEECTTSS
T ss_pred             EEC-CCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeecc--CCCCCceEEECCCCC
Confidence            952 22222111 12223445689999999999765554 68999999998776411122221  236778999999999


Q ss_pred             EEEEee-CCCeEEEEEeeecccccCCCCCCCCccccccce--eEEecCC----CCCCCCeEEEEEecCCCEEEEee-CCC
Q psy11529        161 LLGCGS-TDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNC--LVELNNS----SSGGGWIHSVAFSKDGNKLCWTS-HDG  232 (244)
Q Consensus       161 ~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~----~~~~~~v~~~~~s~~~~~l~~~~-~dg  232 (244)
                      ++++++ .++.|.+||+.                  +++.  +..+..+    .........++|+|||++|++++ .++
T Consensus       234 ~l~v~~~~~~~i~~~d~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~  295 (331)
T 3u4y_A          234 TVYVLTESTVDVFNFNQL------------------SGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISR  295 (331)
T ss_dssp             EEEEECSSEEEEEEEETT------------------TTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTT
T ss_pred             EEEEEEcCCCEEEEEECC------------------CCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCC
Confidence            776554 57789999983                  3333  2222211    00012235689999999886655 467


Q ss_pred             cEEEEeCCC
Q psy11529        233 SINVRMSQQ  241 (244)
Q Consensus       233 ~i~vwd~~~  241 (244)
                      .|.+||+..
T Consensus       296 ~v~v~d~~~  304 (331)
T 3u4y_A          296 ELKVFTISG  304 (331)
T ss_dssp             EEEEEETTS
T ss_pred             cEEEEEecC
Confidence            999999975

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.91  E-value=4.8e-22  Score=150.15  Aligned_cols=199  Identities=8%  Similarity=-0.029  Sum_probs=142.3

Q ss_pred             ceEEEEEcCCCCeEE-EecCCCeEEEeeeccCCCcceeeeeeccC------CCceEEEEeCCCCCeEEEEeCC-------
Q psy11529         11 PVTTHAWNNTRQQLA-FTPNNQEVHLYQYEKAANDWSQLDVLDGH------DLKVTGIDWAPNTNRIVTCSAD-------   76 (244)
Q Consensus        11 ~v~~~~~~~~~~~l~-~~~~d~~v~v~~~~~~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~~~~~d-------   76 (244)
                      .+..++|+|+|++++ ++..++.|.+||+.+  +  +....+...      ...+.+++|+|+|+++++++.+       
T Consensus        44 ~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t--~--~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~  119 (349)
T 1jmx_B           44 GPGTAMMAPDNRTAYVLNNHYGDIYGIDLDT--C--KNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDH  119 (349)
T ss_dssp             SSCEEEECTTSSEEEEEETTTTEEEEEETTT--T--EEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSC
T ss_pred             CCceeEECCCCCEEEEEeCCCCcEEEEeCCC--C--cEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccc
Confidence            578899999998654 555689999999976  4  444444422      2337889999999999988865       


Q ss_pred             -----ccEEEEeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeee--------
Q psy11529         77 -----RNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIK--------  143 (244)
Q Consensus        77 -----~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~--------  143 (244)
                           +.|.+||  +.+++.........+...+.+++|+|+++ +++++.  .|.+||..+++.........        
T Consensus       120 ~~~~~~~i~~~d--~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~  194 (349)
T 1jmx_B          120 YVVKPPRLEVFS--TADGLEAKPVRTFPMPRQVYLMRAADDGS-LYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSA  194 (349)
T ss_dssp             EEECCCEEEEEE--GGGGGGBCCSEEEECCSSCCCEEECTTSC-EEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCC
T ss_pred             cccCCCeEEEEE--CCCccccceeeeccCCCcccceeECCCCc-EEEccC--cEEEEeCCCCceeccccccccCCccccC
Confidence                 8999999  66644322222233455688999999999 555543  39999987765311110000        


Q ss_pred             --------------------------------------------------------cCCCCceeEEEecC-CCCEEEEee
Q psy11529        144 --------------------------------------------------------KPIKSTITCLDWHP-NNHLLGCGS  166 (244)
Q Consensus       144 --------------------------------------------------------~~~~~~v~~~~~~p-~~~~l~~~~  166 (244)
                                                                              ......+..++|+| ++++++++ 
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~-  273 (349)
T 1jmx_B          195 PDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-  273 (349)
T ss_dssp             CBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE-
T ss_pred             ccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE-
Confidence                                                                    00011355778889 99998888 


Q ss_pred             CCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCCC
Q psy11529        167 TDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQV  242 (244)
Q Consensus       167 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~  242 (244)
                       ++.|.+||+                  .+++.+..+..    ...+.+++|+|+|++|++++.++.|.+||+++.
T Consensus       274 -~~~v~~~d~------------------~~~~~~~~~~~----~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~  326 (349)
T 1jmx_B          274 -LNRLAKYDL------------------KQRKLIKAANL----DHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTL  326 (349)
T ss_dssp             -ESEEEEEET------------------TTTEEEEEEEC----SSCCCEEEECSSSSCEEEESBSSEEEEEETTTT
T ss_pred             -cCeEEEEEC------------------ccCeEEEEEcC----CCCccceEECCCCCEEEEecCCCeEEEEecccc
Confidence             889999998                  56676666654    445779999999998888888999999999764

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.90  E-value=2e-22  Score=166.26  Aligned_cols=197  Identities=19%  Similarity=0.231  Sum_probs=140.2

Q ss_pred             ceEEEEEcCCCCeEEEecCC---------CeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEE
Q psy11529         11 PVTTHAWNNTRQQLAFTPNN---------QEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYV   81 (244)
Q Consensus        11 ~v~~~~~~~~~~~l~~~~~d---------~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i   81 (244)
                      .|.+++|||||++|++++.+         +.+++||+.+  +....+....+|...+..++|||||++|++++. +.|++
T Consensus        62 ~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~--~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~  138 (723)
T 1xfd_A           62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPH--GDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYY  138 (723)
T ss_dssp             TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSS--CCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEE
T ss_pred             ccceEEECCCCCEEEEEecCccceeecceeeEEEEECCC--CceEeccCCccccccccccEECCCCCEEEEEEC-CeEEE
Confidence            48999999999999998764         7899999987  433333334455566889999999999999875 78999


Q ss_pred             EeeeCCCCCceeeEEEeccCc------------------ceEEEEECCCCCeEEEeeCCC--------------------
Q psy11529         82 WTQNNDDKKWKPTLVLLRINR------------------AATCVKWSPLENKFAAGSGAR--------------------  123 (244)
Q Consensus        82 wd~~~~~~~~~~~~~~~~~~~------------------~v~~~~~~~~~~~l~~~~~d~--------------------  123 (244)
                      ||  ..+++.....  ..+..                  .+.+++|+|||+.|++++.++                    
T Consensus       139 ~~--~~~g~~~~~~--~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (723)
T 1xfd_A          139 CA--HVGKQAIRVV--STGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVK  214 (723)
T ss_dssp             ES--SSSSCCEEEE--CCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCE
T ss_pred             EE--CCCCceEEEe--cCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcce
Confidence            99  6776643322  22222                  237899999999999987543                    


Q ss_pred             --------------eEEEEEeecCCCceEEEeeecC------CCCceeEEEecCCCCEEEEeeC----CCeEEEEEeeec
Q psy11529        124 --------------LISVCYFESENDWWVAKHIKKP------IKSTITCLDWHPNNHLLGCGST----DFKVRVFSAYIK  179 (244)
Q Consensus       124 --------------~i~i~d~~~~~~~~~~~~~~~~------~~~~v~~~~~~p~~~~l~~~~~----dg~i~i~d~~~~  179 (244)
                                    .|++||+.+++.    ......      +...+..++|+|||+++++...    +..|++||+   
T Consensus       215 ~~~~~~~G~~~~~~~l~~~d~~~~~~----~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~---  287 (723)
T 1xfd_A          215 PYHYPKAGSENPSISLHVIGLNGPTH----DLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDA---  287 (723)
T ss_dssp             EEECCBTTSCCCEEEEEEEESSSSCC----CEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEET---
T ss_pred             eccCCCCCCCCCeeEEEEEECCCCce----eEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeC---
Confidence                          788999887753    111122      2567899999999998877653    357999998   


Q ss_pred             ccccCCCCCCCCccccccceeEEecCCCCCCCCe----EEEEEecCCCEEEE--eeCCC------cEEEEe
Q psy11529        180 DIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWI----HSVAFSKDGNKLCW--TSHDG------SINVRM  238 (244)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v----~~~~~s~~~~~l~~--~~~dg------~i~vwd  238 (244)
                                     .+++....+..++  ...+    ..++|+|||+.|+.  +..++      .|.+||
T Consensus       288 ---------------~~g~~~~~~~~~~--~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d  341 (723)
T 1xfd_A          288 ---------------TTGVCTKKHEDES--EAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSS  341 (723)
T ss_dssp             ---------------TTCCEEEEEEEEC--SSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEEC
T ss_pred             ---------------CCCcceEEEEecc--CCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEe
Confidence                           4555554443321  3333    37899999997765  44666      577777

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.90  E-value=7.5e-22  Score=159.16  Aligned_cols=195  Identities=8%  Similarity=-0.014  Sum_probs=139.5

Q ss_pred             CCceEEEEEcCCCCeEEEecC-CCeEEEeeeccCCCcceeeeeeccCC-CceEEEEeCCCCCeEEEEeC---CccEEEEe
Q psy11529          9 INPVTTHAWNNTRQQLAFTPN-NQEVHLYQYEKAANDWSQLDVLDGHD-LKVTGIDWAPNTNRIVTCSA---DRNAYVWT   83 (244)
Q Consensus         9 ~~~v~~~~~~~~~~~l~~~~~-d~~v~v~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~---d~~i~iwd   83 (244)
                      ..+|.+++|+|||+.||+++. ||+++||++++  +   ....+..|. ..+..++|+|+ +.+++++.   +....+|.
T Consensus        21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~--g---~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~   94 (582)
T 3o4h_A           21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDG--G---ETVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFK   94 (582)
T ss_dssp             HSCEEEEEEEETTTEEEEEEEETTEEEEEEEET--T---EEEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEE
T ss_pred             ccchheeecCCCCCeEEEEEccCCceeEEEEcC--C---CcEeeecccccccccccCCCC-eEEEEeccCCCCcceEEEE
Confidence            568999999999999999877 99999999966  3   334455555 68999999999 77776664   45667776


Q ss_pred             eeC-CCCCceeeEEEeccCcceEEEEECCCCCe-EEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCE
Q psy11529         84 QNN-DDKKWKPTLVLLRINRAATCVKWSPLENK-FAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHL  161 (244)
Q Consensus        84 ~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~  161 (244)
                      ++. ..+...   .+. ........+|+|+++. +++++.++.+.+||+++++.    ....... .  .+++|+|||++
T Consensus        95 ~~~~~~g~~~---~l~-~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~----~~l~~~~-~--~~~~~spDG~~  163 (582)
T 3o4h_A           95 VNTSRPGEEQ---RLE-AVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGL----RELARLP-G--FGFVSDIRGDL  163 (582)
T ss_dssp             EETTSTTCCE---ECT-TSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEE----EEEEEES-S--CEEEEEEETTE
T ss_pred             EeccCCCccc---ccc-CCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcE----EEeecCC-C--ceEEECCCCCE
Confidence            534 122211   222 2223446688888754 33334444555999988754    2222221 2  88999999999


Q ss_pred             EEEeeCC----CeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCC--cEE
Q psy11529        162 LGCGSTD----FKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDG--SIN  235 (244)
Q Consensus       162 l~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg--~i~  235 (244)
                      |++++.+    +.|++||+                  ..++.. .+..+   ...+..++|||||++|+++..++  .|+
T Consensus       164 la~~~~~~~~~~~i~~~d~------------------~~g~~~-~l~~~---~~~~~~~~~SpDG~~l~~~~~~~~~~i~  221 (582)
T 3o4h_A          164 IAGLGFFGGGRVSLFTSNL------------------SSGGLR-VFDSG---EGSFSSASISPGMKVTAGLETAREARLV  221 (582)
T ss_dssp             EEEEEEEETTEEEEEEEET------------------TTCCCE-EECCS---SCEEEEEEECTTSCEEEEEECSSCEEEE
T ss_pred             EEEEEEcCCCCeEEEEEcC------------------CCCCce-EeecC---CCccccceECCCCCEEEEccCCCeeEEE
Confidence            9988776    78999997                  444443 56666   77889999999999999888888  899


Q ss_pred             EEeCCCC
Q psy11529        236 VRMSQQV  242 (244)
Q Consensus       236 vwd~~~~  242 (244)
                      +||+++.
T Consensus       222 ~~d~~~~  228 (582)
T 3o4h_A          222 TVDPRDG  228 (582)
T ss_dssp             EECTTTC
T ss_pred             EEcCCCC
Confidence            9998753

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.90  E-value=6.7e-22  Score=162.80  Aligned_cols=210  Identities=13%  Similarity=0.101  Sum_probs=145.3

Q ss_pred             CCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCc-ceeeeeeccCCCc--------------eEEEEeCCCCCeEEEE
Q psy11529          9 INPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAAND-WSQLDVLDGHDLK--------------VTGIDWAPNTNRIVTC   73 (244)
Q Consensus         9 ~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~-~~~~~~~~~~~~~--------------v~~~~~~~~~~~l~~~   73 (244)
                      ...+.+++|+|||++|+++ .++.|++|++.+..+. -+.......+...              +.+++|+|||++|+++
T Consensus       120 ~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~  198 (706)
T 2z3z_A          120 NEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFY  198 (706)
T ss_dssp             TTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEE
T ss_pred             cccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEE
Confidence            5668889999999999986 5799999998651000 0222222222222              4889999999999988


Q ss_pred             e---------------------------------CCccEEEEeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEee
Q psy11529         74 S---------------------------------ADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGS  120 (244)
Q Consensus        74 ~---------------------------------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  120 (244)
                      +                                 .+..|.+||  +.+++.........+...+.+++|+|+|+.|++++
T Consensus       199 ~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d--~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~  276 (706)
T 2z3z_A          199 RMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYH--LATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAE  276 (706)
T ss_dssp             EEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEE--TTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEE
T ss_pred             EECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEE--CCCCceEeeccCCCCceeEeeEEEECCCCEEEEEE
Confidence            7                                 457899999  77765332222124556789999999999999887


Q ss_pred             CCC-----eEEEEEeecCCCceEEEeeec-CCCCceeEEEecC--CCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCc
Q psy11529        121 GAR-----LISVCYFESENDWWVAKHIKK-PIKSTITCLDWHP--NNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGS  192 (244)
Q Consensus       121 ~d~-----~i~i~d~~~~~~~~~~~~~~~-~~~~~v~~~~~~p--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  192 (244)
                      .++     .|.+||+.+++.......... .....+..++|+|  +|+++++++.+|.++||++.               
T Consensus       277 ~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~---------------  341 (706)
T 2z3z_A          277 VNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYD---------------  341 (706)
T ss_dssp             ECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEE---------------
T ss_pred             eCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEE---------------
Confidence            665     899999888732111111111 1112346789999  99999999999999999883               


Q ss_pred             cccccceeEEecCCCCCCCCeEE-EEEecCCCEEEEeeC-CC----cEEEEeCCC
Q psy11529        193 KSTLGNCLVELNNSSSGGGWIHS-VAFSKDGNKLCWTSH-DG----SINVRMSQQ  241 (244)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~v~~-~~~s~~~~~l~~~~~-dg----~i~vwd~~~  241 (244)
                        ..++.+..+..+   ...+.. ++|+|||+.|+.++. ++    .|..||+.+
T Consensus       342 --~~~~~~~~l~~~---~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~  391 (706)
T 2z3z_A          342 --TTGRLIRQVTKG---EWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKG  391 (706)
T ss_dssp             --TTSCEEEECCCS---SSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTC
T ss_pred             --CCCCEEEecCCC---CeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCC
Confidence              245566666666   667776 799999997766554 44    566677654

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.90  E-value=3e-21  Score=158.92  Aligned_cols=200  Identities=14%  Similarity=0.186  Sum_probs=140.9

Q ss_pred             eEEEEEcCCCCeEEEec---------------------------------CCCeEEEeeeccCCCcceeeeeeccCCCce
Q psy11529         12 VTTHAWNNTRQQLAFTP---------------------------------NNQEVHLYQYEKAANDWSQLDVLDGHDLKV   58 (244)
Q Consensus        12 v~~~~~~~~~~~l~~~~---------------------------------~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v   58 (244)
                      +.+++|+|||++|++++                                 .+..|++||+.+  +....+.....|...+
T Consensus       183 ~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~--~~~~~~~~~~~~~~~~  260 (706)
T 2z3z_A          183 EKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLAT--GKTVYLQTGEPKEKFL  260 (706)
T ss_dssp             CCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTT--TEEEECCCCSCTTCEE
T ss_pred             CceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCC--CceEeeccCCCCceeE
Confidence            58899999999999987                                 446899999987  4222222223567889


Q ss_pred             EEEEeCCCCCeEEEEeCCc-----cEEEEeeeCCCCCceeeEEEeccCc---ceEEEEECC--CCCeEEEeeCCCeEEEE
Q psy11529         59 TGIDWAPNTNRIVTCSADR-----NAYVWTQNNDDKKWKPTLVLLRINR---AATCVKWSP--LENKFAAGSGARLISVC  128 (244)
Q Consensus        59 ~~~~~~~~~~~l~~~~~d~-----~i~iwd~~~~~~~~~~~~~~~~~~~---~v~~~~~~~--~~~~l~~~~~d~~i~i~  128 (244)
                      .+++|+|||++|++++.++     .|.+||  ..+++............   .+..++|+|  +|++++++..++.+++|
T Consensus       261 ~~~~~spdg~~l~~~~~~~~~~~~~v~~~d--~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~  338 (706)
T 2z3z_A          261 TNLSWSPDENILYVAEVNRAQNECKVNAYD--AETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLY  338 (706)
T ss_dssp             EEEEECTTSSEEEEEEECTTSCEEEEEEEE--TTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEE
T ss_pred             eeEEEECCCCEEEEEEeCCCCCeeEEEEEE--CCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEE
Confidence            9999999999999877665     899999  77773222222122222   246789999  99999999999999999


Q ss_pred             EeecCCCceEEEeeecCCCCceeE-EEecCCCCEEEEeeCC-C----eEEEEEeeecccccCCCCCCCCccccccceeEE
Q psy11529        129 YFESENDWWVAKHIKKPIKSTITC-LDWHPNNHLLGCGSTD-F----KVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVE  202 (244)
Q Consensus       129 d~~~~~~~~~~~~~~~~~~~~v~~-~~~~p~~~~l~~~~~d-g----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (244)
                      +++....   .......+...+.. ++|+|+|+.|+.++.+ +    .|..||+                  ..++ ...
T Consensus       339 ~~~~~~~---~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~------------------~~~~-~~~  396 (706)
T 2z3z_A          339 LYDTTGR---LIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDI------------------KGGK-TKD  396 (706)
T ss_dssp             EEETTSC---EEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEET------------------TCCC-CEE
T ss_pred             EEECCCC---EEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEc------------------CCCC-cee
Confidence            9984332   23333455566766 7999999877665544 3    4555554                  2232 233


Q ss_pred             ecCCCCCCCCeEEEEEecCCCEEEEeeCC----CcEEEEeCCC
Q psy11529        203 LNNSSSGGGWIHSVAFSKDGNKLCWTSHD----GSINVRMSQQ  241 (244)
Q Consensus       203 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----g~i~vwd~~~  241 (244)
                      +. +   ...+.+++|+|||++|+..+.+    +.|++||+++
T Consensus       397 l~-~---~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~  435 (706)
T 2z3z_A          397 LT-P---ESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGK  435 (706)
T ss_dssp             SC-C---SSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSS
T ss_pred             cc-C---CCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCC
Confidence            33 3   5678999999999988776543    5699999865

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.90  E-value=2.9e-22  Score=171.29  Aligned_cols=192  Identities=9%  Similarity=0.088  Sum_probs=153.8

Q ss_pred             ceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeecc-----------CCCceEEEEeC-CCCCeEEEEeCCcc
Q psy11529         11 PVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDG-----------HDLKVTGIDWA-PNTNRIVTCSADRN   78 (244)
Q Consensus        11 ~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~-----------~~~~v~~~~~~-~~~~~l~~~~~d~~   78 (244)
                      .+...+|+|||+.|+++. ++.|++|++..     ..+..+..           |...+.+++|+ |+|++|++++ ++.
T Consensus       246 ~~~~~~~SpDG~~la~~~-~~~i~~~d~~~-----~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~  318 (1045)
T 1k32_A          246 DYYPRHLNTDGRRILFSK-GGSIYIFNPDT-----EKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQ  318 (1045)
T ss_dssp             SSCEEEEEESSSCEEEEE-TTEEEEECTTT-----CCEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTE
T ss_pred             CcceeeEcCCCCEEEEEe-CCEEEEecCCc-----eEeeeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCE
Confidence            356779999999999884 89999999854     23334443           34578999999 9999999887 789


Q ss_pred             EEEEeeeCCCCCceeeEEEeccCc-ceEEEEECCCCCeEEEeeCCCeEE-EEEeecCCCceEEEeeecCCCCceeEEEec
Q psy11529         79 AYVWTQNNDDKKWKPTLVLLRINR-AATCVKWSPLENKFAAGSGARLIS-VCYFESENDWWVAKHIKKPIKSTITCLDWH  156 (244)
Q Consensus        79 i~iwd~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~d~~i~-i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~  156 (244)
                      +.+|+  ...+..   ..+..+.. .+..++|+ +|+.|++++.+..+. +|++..+..    ... ..+...+..++|+
T Consensus       319 i~~~~--~~~~~~---~~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~----~~l-~~~~~~~~~~~~S  387 (1045)
T 1k32_A          319 AFIQD--VSGTYV---LKVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKA----EKF-EENLGNVFAMGVD  387 (1045)
T ss_dssp             EEEEC--TTSSBE---EECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCE----EEC-CCCCCSEEEEEEC
T ss_pred             EEEEc--CCCCce---EEccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCc----eEe-cCCccceeeeEEC
Confidence            99999  666652   23345666 88999999 999999998888888 888876643    222 2666789999999


Q ss_pred             CCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCC----
Q psy11529        157 PNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDG----  232 (244)
Q Consensus       157 p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg----  232 (244)
                      |||++|++++.++.|++||+                  .+++.......|   ...+.+++|||||++|++++.++    
T Consensus       388 pDG~~la~~~~~~~v~~~d~------------------~tg~~~~~~~~~---~~~v~~~~~SpDG~~la~~~~~~~~~~  446 (1045)
T 1k32_A          388 RNGKFAVVANDRFEIMTVDL------------------ETGKPTVIERSR---EAMITDFTISDNSRFIAYGFPLKHGET  446 (1045)
T ss_dssp             TTSSEEEEEETTSEEEEEET------------------TTCCEEEEEECS---SSCCCCEEECTTSCEEEEEEEECSSTT
T ss_pred             CCCCEEEEECCCCeEEEEEC------------------CCCceEEeccCC---CCCccceEECCCCCeEEEEecCccccc
Confidence            99999999999999999998                  566666666667   78899999999999998887654    


Q ss_pred             ------cEEEEeCCC
Q psy11529        233 ------SINVRMSQQ  241 (244)
Q Consensus       233 ------~i~vwd~~~  241 (244)
                            .|++||+.+
T Consensus       447 ~~~~~~~i~l~d~~~  461 (1045)
T 1k32_A          447 DGYVMQAIHVYDMEG  461 (1045)
T ss_dssp             CSCCEEEEEEEETTT
T ss_pred             cCCCCCeEEEEECCC
Confidence                  899999875

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.89  E-value=1.4e-22  Score=167.09  Aligned_cols=190  Identities=13%  Similarity=0.189  Sum_probs=134.1

Q ss_pred             EEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCC---ceEEEEeCCCCCeEEEEeC---------CccEEE
Q psy11529         14 THAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDL---KVTGIDWAPNTNRIVTCSA---------DRNAYV   81 (244)
Q Consensus        14 ~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~~~~~---------d~~i~i   81 (244)
                      +++|+|+|+++++ +.|+.|++|++.+  +  +....+..|..   .+.+++|||||++|++++.         ++.|++
T Consensus        20 ~~~~s~dg~~~~~-~~d~~i~~~~~~~--g--~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~   94 (719)
T 1z68_A           20 FPNWISGQEYLHQ-SADNNIVLYNIET--G--QSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYI   94 (719)
T ss_dssp             CCEESSSSEEEEE-CTTSCEEEEESSS--C--CEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEE
T ss_pred             ccEECCCCeEEEE-cCCCCEEEEEcCC--C--cEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEE
Confidence            7899999965555 4689999999987  4  34444444433   4899999999999998876         689999


Q ss_pred             EeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCC-------------
Q psy11529         82 WTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKS-------------  148 (244)
Q Consensus        82 wd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~-------------  148 (244)
                      ||  +.+++......   ....+..++|+|||+.|+++. ++.|++|++.+++.   ......++..             
T Consensus        95 ~d--~~~g~~~~~~~---l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~---~~l~~~~~~~~v~~g~~~~v~~e  165 (719)
T 1z68_A           95 YD--LSNGEFVRGNE---LPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPP---FQITFNGRENKIFNGIPDWVYEE  165 (719)
T ss_dssp             EE--TTTTEECCSSC---CCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCC---EECCCCCBTTTEEESSCCHHHHH
T ss_pred             EE--CCCCcccccee---cCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCc---EEEecCCCcCCeEcccccceeee
Confidence            99  77776411011   125688999999999999986 78999999987764   1111122222             


Q ss_pred             ----ceeEEEecCCCCEEEEeeCCC----------------------------------eEEEEEeeecccccCCCCCCC
Q psy11529        149 ----TITCLDWHPNNHLLGCGSTDF----------------------------------KVRVFSAYIKDIESAPQSTNW  190 (244)
Q Consensus       149 ----~v~~~~~~p~~~~l~~~~~dg----------------------------------~i~i~d~~~~~~~~~~~~~~~  190 (244)
                          ...+++|+|||++|++++.|.                                  .|++||+.             
T Consensus       166 e~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~-------------  232 (719)
T 1z68_A          166 EMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTT-------------  232 (719)
T ss_dssp             HTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESS-------------
T ss_pred             ecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECC-------------
Confidence                125899999999999887542                                  67777773             


Q ss_pred             Ccccccccee--------EEecCCCCCCCCeEEEEEecCCCEEEEeeCC----CcEEEEe
Q psy11529        191 GSKSTLGNCL--------VELNNSSSGGGWIHSVAFSKDGNKLCWTSHD----GSINVRM  238 (244)
Q Consensus       191 ~~~~~~~~~~--------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----g~i~vwd  238 (244)
                           .++..        ..+..|   ...+..++|+||++++++....    ..|.+||
T Consensus       233 -----~~~~~~~~~~~~~~~~~~~---~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d  284 (719)
T 1z68_A          233 -----YPAYVGPQEVPVPAMIASS---DYYFSWLTWVTDERVCLQWLKRVQNVSVLSICD  284 (719)
T ss_dssp             -----CHHHHCCEECCCCHHHHTS---CEEEEEEEESSSSEEEEEEEESSTTEEEEEEEE
T ss_pred             -----CCCccceeEccCCccCCCC---cceEEEeEEeCCCeEEEEEeccccCeEEEEEEc
Confidence                 22221        112345   7789999999998877775432    2488888

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.89  E-value=2.6e-20  Score=141.89  Aligned_cols=205  Identities=9%  Similarity=0.009  Sum_probs=138.4

Q ss_pred             eEEEEEcCCCCe--EEEec-------------CCCeEEEeeeccCCCcceeeeeec----cCCCceEEEEeCCCCCeEEE
Q psy11529         12 VTTHAWNNTRQQ--LAFTP-------------NNQEVHLYQYEKAANDWSQLDVLD----GHDLKVTGIDWAPNTNRIVT   72 (244)
Q Consensus        12 v~~~~~~~~~~~--l~~~~-------------~d~~v~v~~~~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~   72 (244)
                      +.+++|+|+|++  ++++.             .++.+.+|++... +  +....+.    .+...+.+++|+|+|+++++
T Consensus        85 ~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~-g--~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~  161 (365)
T 1jof_A           85 PRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSET-G--KLEKNVQNYEYQENTGIHGMVFDPTETYLYS  161 (365)
T ss_dssp             GGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTT-C--CEEEEEEEEECCTTCCEEEEEECTTSSEEEE
T ss_pred             CccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCC-C--cCcceEeeEEeCCCCcceEEEECCCCCEEEE
Confidence            456889999994  44553             6889999999642 2  2222222    24567899999999998887


Q ss_pred             EeC-CccEEEEeeeCC-CCCceeeEEEe--ccCcceEEEEECCCCCeEEEeeC-CCeEEEEEeecCCCceEE--Eee-ec
Q psy11529         73 CSA-DRNAYVWTQNND-DKKWKPTLVLL--RINRAATCVKWSPLENKFAAGSG-ARLISVCYFESENDWWVA--KHI-KK  144 (244)
Q Consensus        73 ~~~-d~~i~iwd~~~~-~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~-d~~i~i~d~~~~~~~~~~--~~~-~~  144 (244)
                      +.. ++.|.+||  .. +++........  .+...+..++|+|+|+++++++. ++.+.+|+++........  ... ..
T Consensus       162 ~~~~~~~v~~~~--~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~  239 (365)
T 1jof_A          162 ADLTANKLWTHR--KLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLI  239 (365)
T ss_dssp             EETTTTEEEEEE--ECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESS
T ss_pred             EcCCCCEEEEEE--ECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcC
Confidence            654 67999999  55 56543322222  13466899999999999888775 789999998753221111  111 11


Q ss_pred             C-----CCC------ceeEEE-ecCCCCEEEEeeCC-C-----eEEEEEeeecccccCCCCCCCCccccccceeE---Ee
Q psy11529        145 P-----IKS------TITCLD-WHPNNHLLGCGSTD-F-----KVRVFSAYIKDIESAPQSTNWGSKSTLGNCLV---EL  203 (244)
Q Consensus       145 ~-----~~~------~v~~~~-~~p~~~~l~~~~~d-g-----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~---~~  203 (244)
                      +     +..      .+..++ |+|||++|++++.+ .     .|.+|++.                 ..++...   ..
T Consensus       240 ~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~-----------------~~g~~~~~~~~~  302 (365)
T 1jof_A          240 PPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLR-----------------DCGSIEKQLFLS  302 (365)
T ss_dssp             CTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEEC-----------------TTSCEEEEEEEE
T ss_pred             CCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEEC-----------------CCCCEEEeeeee
Confidence            1     111      588999 99999988776543 2     89999983                 1233322   13


Q ss_pred             cCCCCCCCCeEEEEEec---CCCEEEEeeC-CCcEEEEeCCC
Q psy11529        204 NNSSSGGGWIHSVAFSK---DGNKLCWTSH-DGSINVRMSQQ  241 (244)
Q Consensus       204 ~~~~~~~~~v~~~~~s~---~~~~l~~~~~-dg~i~vwd~~~  241 (244)
                      ..+   ...+..++|+|   ||++|++++. ++.|.+|+++.
T Consensus       303 ~~~---~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~  341 (365)
T 1jof_A          303 PTP---TSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKD  341 (365)
T ss_dssp             ECS---SCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEET
T ss_pred             ecC---CCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEch
Confidence            223   44567889999   8999998876 48999998753

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.89  E-value=2.6e-20  Score=141.93  Aligned_cols=208  Identities=9%  Similarity=0.012  Sum_probs=137.7

Q ss_pred             CceEEEEEcCCCCeEEEecCCCeEEEeeec-cCCCcceeeeeeccCCCceEEEEeCCCCCe--EEEEe------------
Q psy11529         10 NPVTTHAWNNTRQQLAFTPNNQEVHLYQYE-KAANDWSQLDVLDGHDLKVTGIDWAPNTNR--IVTCS------------   74 (244)
Q Consensus        10 ~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--l~~~~------------   74 (244)
                      ..+..++|+|+|++|++++.+ .|.+|++. +  +..........+ +....++|+|+|++  ++++.            
T Consensus        40 ~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~--g~~~~~~~~~~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~  115 (365)
T 1jof_A           40 EPISWMTFDHERKNIYGAAMK-KWSSFAVKSP--TEIVHEASHPIG-GHPRANDADTNTRAIFLLAAKQPPYAVYANPFY  115 (365)
T ss_dssp             CCCSEEEECTTSSEEEEEEBT-EEEEEEEEET--TEEEEEEEEECC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEES
T ss_pred             CCCcEEEECCCCCEEEEEccc-eEEEEEECCC--CCEEEeeEeecC-CCCccEEECCCCCEEEEEEecCCcceeccceee
Confidence            467789999999999888877 99999996 4  322212122211 23556899999994  44553            


Q ss_pred             -CCccEEEEeeeCC-CCCceeeEEEe--ccCcceEEEEECCCCCeEEEeeC-CCeEEEEEee-cCCCceEEEeeec-CCC
Q psy11529         75 -ADRNAYVWTQNND-DKKWKPTLVLL--RINRAATCVKWSPLENKFAAGSG-ARLISVCYFE-SENDWWVAKHIKK-PIK  147 (244)
Q Consensus        75 -~d~~i~iwd~~~~-~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~-d~~i~i~d~~-~~~~~~~~~~~~~-~~~  147 (244)
                       .++.+.+|+  +. +++........  .+...+.+++|+|+|+++++++. ++.|++|+++ +++. ........ .+.
T Consensus       116 ~~~g~v~v~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~-~~~~~~~~~~~g  192 (365)
T 1jof_A          116 KFAGYGNVFS--VSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEV-ELVGSVDAPDPG  192 (365)
T ss_dssp             SSCCEEEEEE--ECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCE-EEEEEEECSSTT
T ss_pred             cCCceEEEEc--cCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCE-EEeeeEecCCCC
Confidence             688999999  44 45543222221  24567899999999998887764 6899999998 5543 11111211 234


Q ss_pred             CceeEEEecCCCCEEEEeeC-CCeEEEEEeeecccccCCCCCCCCcccccccee------EEecCCCCC-CC------Ce
Q psy11529        148 STITCLDWHPNNHLLGCGST-DFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCL------VELNNSSSG-GG------WI  213 (244)
Q Consensus       148 ~~v~~~~~~p~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~-~~------~v  213 (244)
                      ..+..++|+|+|+++++++. ++.|.+|++..                .+++..      ..+...... ..      .+
T Consensus       193 ~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~----------------~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  256 (365)
T 1jof_A          193 DHPRWVAMHPTGNYLYALMEAGNRICEYVIDP----------------ATHMPVYTHHSFPLIPPGIPDRDPETGKGLYR  256 (365)
T ss_dssp             CCEEEEEECTTSSEEEEEETTTTEEEEEEECT----------------TTCCEEEEEEEEESSCTTCCCBCTTTSSBSEE
T ss_pred             CCCCEeEECCCCCEEEEEECCCCeEEEEEEeC----------------CCCcEEEccceEEcCCCCcCCccccccccccc
Confidence            67899999999998888775 68999998732                122221      111111000 11      48


Q ss_pred             EEEE-EecCCCEEEEeeCC-C-----cEEEEeCC
Q psy11529        214 HSVA-FSKDGNKLCWTSHD-G-----SINVRMSQ  240 (244)
Q Consensus       214 ~~~~-~s~~~~~l~~~~~d-g-----~i~vwd~~  240 (244)
                      ..++ |+|||++|++++.+ +     .|.+|+++
T Consensus       257 ~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~  290 (365)
T 1jof_A          257 ADVCALTFSGKYMFASSRANKFELQGYIAGFKLR  290 (365)
T ss_dssp             EEEEEECTTSSEEEEEEEESSTTSCCEEEEEEEC
T ss_pred             ccEEEECCCCCEEEEECCCCCCCCCCeEEEEEEC
Confidence            8999 99999988776543 2     89999985

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.88  E-value=4.2e-19  Score=134.97  Aligned_cols=211  Identities=5%  Similarity=-0.047  Sum_probs=136.1

Q ss_pred             CCceEEEEEcCCCCeEEEec-CCCeEEEeeeccCCCcceeeeee---c--------cCCCceEEEEeCCCCCeEEEEe-C
Q psy11529          9 INPVTTHAWNNTRQQLAFTP-NNQEVHLYQYEKAANDWSQLDVL---D--------GHDLKVTGIDWAPNTNRIVTCS-A   75 (244)
Q Consensus         9 ~~~v~~~~~~~~~~~l~~~~-~d~~v~v~~~~~~~~~~~~~~~~---~--------~~~~~v~~~~~~~~~~~l~~~~-~   75 (244)
                      ......+++  ++++|++++ .++.|.+|++... +........   .        .+...+.+++|+|+|+++++++ .
T Consensus        99 ~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~-g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~  175 (361)
T 3scy_A           99 GADPCYLTT--NGKNIVTANYSGGSITVFPIGQD-GALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLG  175 (361)
T ss_dssp             SSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTT-SCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETT
T ss_pred             CCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCC-CcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCC
Confidence            345566777  788777665 5789999999642 111111111   1        1233468899999999776655 4


Q ss_pred             CccEEEEeeeCCCC----C-ceee----EEEeccCcceEEEEECCCCCeEEEee-CCCeEEEEEeecCCCceEEEe-eec
Q psy11529         76 DRNAYVWTQNNDDK----K-WKPT----LVLLRINRAATCVKWSPLENKFAAGS-GARLISVCYFESENDWWVAKH-IKK  144 (244)
Q Consensus        76 d~~i~iwd~~~~~~----~-~~~~----~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~-~~~  144 (244)
                      ++.|.+|+++...+    + ....    .........+..++|+|+|+++++++ .++.|.+|+++++........ ...
T Consensus       176 ~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~  255 (361)
T 3scy_A          176 TDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADT  255 (361)
T ss_dssp             TTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCS
T ss_pred             CCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCC
Confidence            78999999533232    2 2111    12223455678999999999888777 589999999986532111111 112


Q ss_pred             CCCCceeEEEecCCCCEEEEeeCC--CeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCC
Q psy11529        145 PIKSTITCLDWHPNNHLLGCGSTD--FKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDG  222 (244)
Q Consensus       145 ~~~~~v~~~~~~p~~~~l~~~~~d--g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~  222 (244)
                      .+......++|+|||++|+++..+  +.|.+|++....              ...+.+..+..    ...+..++|+|||
T Consensus       256 ~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~--------------g~~~~~~~~~~----g~~~~~~~~spdg  317 (361)
T 3scy_A          256 VNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETN--------------GTLTKVGYQLT----GIHPRNFIITPNG  317 (361)
T ss_dssp             SCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTT--------------CCEEEEEEEEC----SSCCCEEEECTTS
T ss_pred             CCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCC--------------CcEEEeeEecC----CCCCceEEECCCC
Confidence            223456899999999988776654  899999983110              01123333332    3457899999999


Q ss_pred             CEEEEee-CCCcEEEEeCC
Q psy11529        223 NKLCWTS-HDGSINVRMSQ  240 (244)
Q Consensus       223 ~~l~~~~-~dg~i~vwd~~  240 (244)
                      ++|++++ .++.|.+|+++
T Consensus       318 ~~l~~~~~~~~~v~v~~~d  336 (361)
T 3scy_A          318 KYLLVACRDTNVIQIFERD  336 (361)
T ss_dssp             CEEEEEETTTTEEEEEEEC
T ss_pred             CEEEEEECCCCCEEEEEEE
Confidence            9888887 67899997554

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.87  E-value=1.1e-20  Score=142.68  Aligned_cols=156  Identities=11%  Similarity=0.022  Sum_probs=111.0

Q ss_pred             EEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCC-CceEEEEeCCCCCeEE-EEeCCccEEEEeeeCCCCCc
Q psy11529         14 THAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHD-LKVTGIDWAPNTNRIV-TCSADRNAYVWTQNNDDKKW   91 (244)
Q Consensus        14 ~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~-~~~~d~~i~iwd~~~~~~~~   91 (244)
                      .++++++++++++++.++.|++||+.+  +  +....+..+. ..+..++|+|++++++ +...++.|.+||  ..+++.
T Consensus         4 g~~~~~~~~~~v~~~~~~~v~~~d~~~--~--~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d--~~t~~~   77 (349)
T 1jmx_B            4 GPALKAGHEYMIVTNYPNNLHVVDVAS--D--TVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGID--LDTCKN   77 (349)
T ss_dssp             CCCCCTTCEEEEEEETTTEEEEEETTT--T--EEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEE--TTTTEE
T ss_pred             cccccCCCEEEEEeCCCCeEEEEECCC--C--cEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEe--CCCCcE
Confidence            457888899999999999999999977  4  5555555332 2578899999998665 455689999999  777764


Q ss_pred             eeeEEEecc----CcceEEEEECCCCCeEEEeeCC------------CeEEEEEeecCCCceEEEeeecCCCCceeEEEe
Q psy11529         92 KPTLVLLRI----NRAATCVKWSPLENKFAAGSGA------------RLISVCYFESENDWWVAKHIKKPIKSTITCLDW  155 (244)
Q Consensus        92 ~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~d------------~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~  155 (244)
                      .........    ...+..++|+|+|+++++++.+            +.|.+||+.+++........  .+...+.+++|
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~--~~~~~~~~~~~  155 (349)
T 1jmx_B           78 TFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTF--PMPRQVYLMRA  155 (349)
T ss_dssp             EEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEE--ECCSSCCCEEE
T ss_pred             EEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeec--cCCCcccceeE
Confidence            433322111    2337889999999999998865            89999999875431111111  12346889999


Q ss_pred             cCCCCEEEEeeCCCeEEEEEeeecc
Q psy11529        156 HPNNHLLGCGSTDFKVRVFSAYIKD  180 (244)
Q Consensus       156 ~p~~~~l~~~~~dg~i~i~d~~~~~  180 (244)
                      +|+|+ +++++  +.|.+||+...+
T Consensus       156 s~dg~-l~~~~--~~i~~~d~~~~~  177 (349)
T 1jmx_B          156 ADDGS-LYVAG--PDIYKMDVKTGK  177 (349)
T ss_dssp             CTTSC-EEEES--SSEEEECTTTCC
T ss_pred             CCCCc-EEEcc--CcEEEEeCCCCc
Confidence            99999 55544  349999986544

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.86  E-value=6.9e-20  Score=137.62  Aligned_cols=203  Identities=12%  Similarity=-0.005  Sum_probs=136.4

Q ss_pred             CeEEEecCCCeEEEeeeccCCCcceeeeeeccCC-C-ceEEEEeCCCCCeEE-EEeCCccEEEEeeeCCCCCceeeEEEe
Q psy11529         22 QQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHD-L-KVTGIDWAPNTNRIV-TCSADRNAYVWTQNNDDKKWKPTLVLL   98 (244)
Q Consensus        22 ~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~-~-~v~~~~~~~~~~~l~-~~~~d~~i~iwd~~~~~~~~~~~~~~~   98 (244)
                      +++++++.++.|++||+.+  +  +....+.... . .+..++|+|++++++ ++..++.|.+||  ..+++....+...
T Consensus         2 ~~~v~~~~~~~v~~~d~~~--~--~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d--~~~~~~~~~~~~~   75 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEK--M--AVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKID--LVTGETLGRIDLS   75 (337)
T ss_dssp             EEEEEEETTTEEEEEETTT--T--EEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEE--TTTCCEEEEEECC
T ss_pred             cEEEEcCCCCeEEEEECCC--C--cEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEE--CCCCCeEeeEEcC
Confidence            4788889999999999977  4  5555555222 1 578899999998765 555678999999  7777754444322


Q ss_pred             c---cCcceEEEEECCCCCeEEEee------------CCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEE
Q psy11529         99 R---INRAATCVKWSPLENKFAAGS------------GARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLG  163 (244)
Q Consensus        99 ~---~~~~v~~~~~~~~~~~l~~~~------------~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~  163 (244)
                      .   +...+..++|+|++++++++.            .++.|.+||+.+.+.   .....  ....+..++|+|++++|+
T Consensus        76 ~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~---~~~~~--~~~~~~~~~~s~dg~~l~  150 (337)
T 1pby_B           76 TPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSR---RKAFE--APRQITMLAWARDGSKLY  150 (337)
T ss_dssp             BTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEE---EEEEE--CCSSCCCEEECTTSSCEE
T ss_pred             CcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcE---EEEEe--CCCCcceeEECCCCCEEE
Confidence            1   122677899999999998886            579999999987653   12221  234678899999999888


Q ss_pred             EeeCCCeEEEEEeeecccccCC------CCCCCCcc--------ccccc----------------------eeEE-----
Q psy11529        164 CGSTDFKVRVFSAYIKDIESAP------QSTNWGSK--------STLGN----------------------CLVE-----  202 (244)
Q Consensus       164 ~~~~dg~i~i~d~~~~~~~~~~------~~~~~~~~--------~~~~~----------------------~~~~-----  202 (244)
                      ++  ++.|++||+...+.....      ....+...        .....                      .+..     
T Consensus       151 ~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~  228 (337)
T 1pby_B          151 GL--GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLET  228 (337)
T ss_dssp             EE--SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTT
T ss_pred             Ee--CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCC
Confidence            87  688999998655432110      00000000        00000                      0111     


Q ss_pred             -------ecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCCC
Q psy11529        203 -------LNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQV  242 (244)
Q Consensus       203 -------~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~  242 (244)
                             +..+   ...+.+++|+|||++|+++  ++.|.+||+++.
T Consensus       229 ~~~~~~~~~~~---~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~  270 (337)
T 1pby_B          229 GEMAMREVRIM---DVFYFSTAVNPAKTRAFGA--YNVLESFDLEKN  270 (337)
T ss_dssp             CCEEEEEEEEC---SSCEEEEEECTTSSEEEEE--ESEEEEEETTTT
T ss_pred             CCceEeecCCC---CCceeeEEECCCCCEEEEe--CCeEEEEECCCC
Confidence                   1122   3456789999999999888  789999998753

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.86  E-value=1.4e-20  Score=155.59  Aligned_cols=213  Identities=12%  Similarity=0.128  Sum_probs=139.9

Q ss_pred             ceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCc-----eEEEEeCCCCCeEEEEeCC---------
Q psy11529         11 PVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLK-----VTGIDWAPNTNRIVTCSAD---------   76 (244)
Q Consensus        11 ~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~-----v~~~~~~~~~~~l~~~~~d---------   76 (244)
                      ...+++|+|||++++++  |+.|++|++.+  +  +....+.+|...     ...++|||||++|+.++.+         
T Consensus        18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~   91 (740)
T 4a5s_A           18 KLYSLRWISDHEYLYKQ--ENNILVFNAEY--G--NSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYT   91 (740)
T ss_dssp             CCCCEEECSSSEEEEEE--TTEEEEEETTT--C--CEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEE
T ss_pred             cccccEECCCCcEEEEc--CCcEEEEECCC--C--ceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccc
Confidence            45689999999988886  89999999987  4  444556655432     3458899999999988875         


Q ss_pred             ccEEEEeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCC--------
Q psy11529         77 RNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKS--------  148 (244)
Q Consensus        77 ~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~--------  148 (244)
                      +.+.+||  +.+++...   +..+...+..++|||||+.||.+. ++.|++|++.++..   ......++..        
T Consensus        92 ~~~~~~d--~~~~~~~~---l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~---~~lt~~g~~~~~~~g~~~  162 (740)
T 4a5s_A           92 ASYDIYD--LNKRQLIT---EERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPS---YRITWTGKEDIIYNGITD  162 (740)
T ss_dssp             EEEEEEE--TTTTEECC---SSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCC---EECCSCCBTTTEEESBCC
T ss_pred             eEEEEEE--CCCCcEEE---cccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCce---EEEcCCCCccceecCccc
Confidence            5667999  77776432   345667899999999999999985 68899999887764   1212222221        


Q ss_pred             ---------ceeEEEecCCCCEEEEeeCCC-eEEEEEeeeccccc-----------CCCCCC------CCccccc---cc
Q psy11529        149 ---------TITCLDWHPNNHLLGCGSTDF-KVRVFSAYIKDIES-----------APQSTN------WGSKSTL---GN  198 (244)
Q Consensus       149 ---------~v~~~~~~p~~~~l~~~~~dg-~i~i~d~~~~~~~~-----------~~~~~~------~~~~~~~---~~  198 (244)
                               ....+.|||||+.|+.++.|. .+.+|++.......           +.....      ..-....   ++
T Consensus       163 ~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~  242 (740)
T 4a5s_A          163 WVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVT  242 (740)
T ss_dssp             HHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSS
T ss_pred             ccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCC
Confidence                     123589999999999876543 46677653221100           000000      0000012   21


Q ss_pred             --eeEEec------CCCCCCCCeEEEEEecCCCEEEEeeC----CCcEEEEeCCC
Q psy11529        199 --CLVELN------NSSSGGGWIHSVAFSKDGNKLCWTSH----DGSINVRMSQQ  241 (244)
Q Consensus       199 --~~~~~~------~~~~~~~~v~~~~~s~~~~~l~~~~~----dg~i~vwd~~~  241 (244)
                        ....+.      ++   ...+..++|+|||++++....    +..|++||+.+
T Consensus       243 ~~~~~~l~~~~~~~~~---~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~t  294 (740)
T 4a5s_A          243 NATSIQITAPASMLIG---DHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDE  294 (740)
T ss_dssp             CCCEEEECCCHHHHTS---CEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEET
T ss_pred             cceEEEecCCccCCCC---CeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCC
Confidence              122232      24   677999999999997665533    33799999765

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.86  E-value=3.3e-21  Score=159.03  Aligned_cols=199  Identities=12%  Similarity=0.111  Sum_probs=133.8

Q ss_pred             ceEEEEEcCCCCeEEEecC---------CCeEEEeeeccCCCcceee--eeeccCCCceEEEEeCCCCCeEEEEeCCccE
Q psy11529         11 PVTTHAWNNTRQQLAFTPN---------NQEVHLYQYEKAANDWSQL--DVLDGHDLKVTGIDWAPNTNRIVTCSADRNA   79 (244)
Q Consensus        11 ~v~~~~~~~~~~~l~~~~~---------d~~v~v~~~~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i   79 (244)
                      .+.+++|||||++|++++.         ++.|++||+.+  +  +..  ..+   ...+..++|||||+.|+++. ++.|
T Consensus        61 ~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~--g--~~~~~~~l---~~~~~~~~~SPDG~~la~~~-~~~i  132 (719)
T 1z68_A           61 NASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSN--G--EFVRGNEL---PRPIQYLCWSPVGSKLAYVY-QNNI  132 (719)
T ss_dssp             TCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTT--T--EECCSSCC---CSSBCCEEECSSTTCEEEEE-TTEE
T ss_pred             ceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCC--C--ccccceec---CcccccceECCCCCEEEEEE-CCeE
Confidence            3889999999999998876         68999999987  4  221  222   25688899999999999886 7899


Q ss_pred             EEEeeeCCCCCceeeEEEeccCcc-----------------eEEEEECCCCCeEEEeeCCC-------------------
Q psy11529         80 YVWTQNNDDKKWKPTLVLLRINRA-----------------ATCVKWSPLENKFAAGSGAR-------------------  123 (244)
Q Consensus        80 ~iwd~~~~~~~~~~~~~~~~~~~~-----------------v~~~~~~~~~~~l~~~~~d~-------------------  123 (244)
                      ++|+  ..+++..... ..++...                 ..+++|+|||++|++++.|.                   
T Consensus       133 ~~~~--~~~g~~~~l~-~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~  209 (719)
T 1z68_A          133 YLKQ--RPGDPPFQIT-FNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRT  209 (719)
T ss_dssp             EEES--STTSCCEECC-CCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEE
T ss_pred             EEEe--CCCCCcEEEe-cCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccc
Confidence            9999  6666543221 1122221                 25899999999999987542                   


Q ss_pred             ---------------eEEEEEeecCCCc-eEEE---eeecCCCCceeEEEecCCCCEEEEeeCC----CeEEEEE----e
Q psy11529        124 ---------------LISVCYFESENDW-WVAK---HIKKPIKSTITCLDWHPNNHLLGCGSTD----FKVRVFS----A  176 (244)
Q Consensus       124 ---------------~i~i~d~~~~~~~-~~~~---~~~~~~~~~v~~~~~~p~~~~l~~~~~d----g~i~i~d----~  176 (244)
                                     .+++||+.+++.. ....   .....+...+..++|+||++++++....    ..|.+||    +
T Consensus       210 ~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~  289 (719)
T 1z68_A          210 INIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDW  289 (719)
T ss_dssp             EEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSS
T ss_pred             eeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCC
Confidence                           6788888776421 0000   1122466788999999998877774432    2488888    5


Q ss_pred             eecccccCCCCCCCCccccccceeEEe----cCCCCCCCCeE-----EEEEecCCCEEEE--eeCCC--cEEEEeCCC
Q psy11529        177 YIKDIESAPQSTNWGSKSTLGNCLVEL----NNSSSGGGWIH-----SVAFSKDGNKLCW--TSHDG--SINVRMSQQ  241 (244)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~v~-----~~~~s~~~~~l~~--~~~dg--~i~vwd~~~  241 (244)
                                        .+++....+    ..|   ...+.     .++|+|||+.|+.  +..+|  .|.+||+..
T Consensus       290 ------------------~~g~~~~~~~~~~~~~---~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~  346 (719)
T 1z68_A          290 ------------------QTWDCPKTQEHIEESR---TGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTV  346 (719)
T ss_dssp             ------------------SSEECCGGGEEEEECS---SSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCS
T ss_pred             ------------------CCCceEEEEecccccC---CceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCC
Confidence                              223332222    234   55555     7899999996554  44555  467777654

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.85  E-value=2.1e-18  Score=126.96  Aligned_cols=202  Identities=13%  Similarity=0.114  Sum_probs=143.8

Q ss_pred             CceEEEEE-cCCCCeEEEecC-CCeEEEeeeccCCCcceeeeeec-cCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeC
Q psy11529         10 NPVTTHAW-NNTRQQLAFTPN-NQEVHLYQYEKAANDWSQLDVLD-GHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNN   86 (244)
Q Consensus        10 ~~v~~~~~-~~~~~~l~~~~~-d~~v~v~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~   86 (244)
                      ..+.++++ .++++++++... ++.|.+|+.++     +....+. .+...+.+++++|+|+.+++...++.|.+||  .
T Consensus        77 ~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d~~g-----~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~--~  149 (286)
T 1q7f_A           77 LYPNRVAVVRNSGDIIVTERSPTHQIQIYNQYG-----QFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFD--Q  149 (286)
T ss_dssp             SSEEEEEEETTTTEEEEEECGGGCEEEEECTTS-----CEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEEC--T
T ss_pred             cCceEEEEEcCCCeEEEEcCCCCCEEEEECCCC-----cEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEc--C
Confidence            46789999 467776666533 78999999554     4444443 2345789999999999888777789999999  4


Q ss_pred             CCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeee-cCCCCceeEEEecCCCCEEEEe
Q psy11529         87 DDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIK-KPIKSTITCLDWHPNNHLLGCG  165 (244)
Q Consensus        87 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-~~~~~~v~~~~~~p~~~~l~~~  165 (244)
                      . ++.........+...+..++++|+++.+++...++.|++||.+.. .   ..... ..+...+..++++|+|+++++.
T Consensus       150 ~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g~-~---~~~~~~~g~~~~p~~i~~d~~G~l~v~~  224 (286)
T 1q7f_A          150 N-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQ-Y---LRQIGGEGITNYPIGVGINSNGEILIAD  224 (286)
T ss_dssp             T-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCC-E---EEEESCTTTSCSEEEEEECTTCCEEEEE
T ss_pred             C-CCEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCCCC-E---EEEEccCCccCCCcEEEECCCCCEEEEe
Confidence            3 443222221133456899999999987777777899999997432 1   11111 1223578899999999988888


Q ss_pred             eCCC-eEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCCCCC
Q psy11529        166 STDF-KVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQVLP  244 (244)
Q Consensus       166 ~~dg-~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~p  244 (244)
                      ..++ .|.+||.                   .++.+..+..+.. ...+.+++++|+|+++++ +.|+.|++|++....|
T Consensus       225 ~~~~~~i~~~~~-------------------~g~~~~~~~~~~~-~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~~p  283 (286)
T 1q7f_A          225 NHNNFNLTIFTQ-------------------DGQLISALESKVK-HAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQLAP  283 (286)
T ss_dssp             CSSSCEEEEECT-------------------TSCEEEEEEESSC-CSCEEEEEEETTTEEEEE-ETTTEEEEEECSCCCC
T ss_pred             CCCCEEEEEECC-------------------CCCEEEEEcccCC-CCcceeEEECCCCcEEEE-CCCCeEEEEEcccccc
Confidence            7776 9999995                   3555555554310 234789999999987777 5799999999987655

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.85  E-value=1.9e-20  Score=150.96  Aligned_cols=190  Identities=9%  Similarity=0.048  Sum_probs=134.6

Q ss_pred             CceEEEEEcCCCCeEEEecC---CCeEEEeeecc--CCCcceeeeeeccCCCceEEEEeCCCCCe-EEEEeCCccEEEEe
Q psy11529         10 NPVTTHAWNNTRQQLAFTPN---NQEVHLYQYEK--AANDWSQLDVLDGHDLKVTGIDWAPNTNR-IVTCSADRNAYVWT   83 (244)
Q Consensus        10 ~~v~~~~~~~~~~~l~~~~~---d~~v~v~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~iwd   83 (244)
                      ..+..++|+|| +.+++++.   +....+|.+..  .+.   .. .+... ..+...+|+|+++. +++.+.++.+.+||
T Consensus        65 ~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~g~---~~-~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~~l~d  138 (582)
T 3o4h_A           65 NSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRPGE---EQ-RLEAV-KPMRILSGVDTGEAVVFTGATEDRVALYA  138 (582)
T ss_dssp             SEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTSTTC---CE-ECTTS-CSBEEEEEEECSSCEEEEEECSSCEEEEE
T ss_pred             cccccccCCCC-eEEEEeccCCCCcceEEEEEeccCCCc---cc-cccCC-CCceeeeeCCCCCeEEEEecCCCCceEEE
Confidence            57899999999 77766654   45566665532  212   22 33322 23346678887763 23333445566999


Q ss_pred             eeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCC----CeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCC
Q psy11529         84 QNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGA----RLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNN  159 (244)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~  159 (244)
                        +.+++.....   .+..  .+++|+|||++|++++.+    ..|++||+.+++.     .....+...+..++|+|||
T Consensus       139 --~~~g~~~~l~---~~~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~-----~~l~~~~~~~~~~~~SpDG  206 (582)
T 3o4h_A          139 --LDGGGLRELA---RLPG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGL-----RVFDSGEGSFSSASISPGM  206 (582)
T ss_dssp             --EETTEEEEEE---EESS--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCC-----EEECCSSCEEEEEEECTTS
T ss_pred             --ccCCcEEEee---cCCC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCc-----eEeecCCCccccceECCCC
Confidence              6676533322   2233  789999999999988776    7799999887764     2345667788999999999


Q ss_pred             CEEEEeeCCC--eEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEE--------EecCCCEEEEee
Q psy11529        160 HLLGCGSTDF--KVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVA--------FSKDGNKLCWTS  229 (244)
Q Consensus       160 ~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--------~s~~~~~l~~~~  229 (244)
                      +.|+++..++  .|++||+                  ..++.. .+..+   ...+..++        |+|||.++++++
T Consensus       207 ~~l~~~~~~~~~~i~~~d~------------------~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~spdg~~~~~~~  264 (582)
T 3o4h_A          207 KVTAGLETAREARLVTVDP------------------RDGSVE-DLELP---SKDFSSYRPTAITWLGYLPDGRLAVVAR  264 (582)
T ss_dssp             CEEEEEECSSCEEEEEECT------------------TTCCEE-ECCCS---CSHHHHHCCSEEEEEEECTTSCEEEEEE
T ss_pred             CEEEEccCCCeeEEEEEcC------------------CCCcEE-EccCC---CcChhhhhhccccceeEcCCCcEEEEEE
Confidence            9999888888  8999998                  445555 55555   55666666        999999899999


Q ss_pred             CCCcEEEEeC
Q psy11529        230 HDGSINVRMS  239 (244)
Q Consensus       230 ~dg~i~vwd~  239 (244)
                      .|+.+++|++
T Consensus       265 ~~g~~~l~~~  274 (582)
T 3o4h_A          265 REGRSAVFID  274 (582)
T ss_dssp             ETTEEEEEET
T ss_pred             cCCcEEEEEE
Confidence            9999999987

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.84  E-value=3.4e-19  Score=136.62  Aligned_cols=195  Identities=9%  Similarity=0.070  Sum_probs=132.9

Q ss_pred             EEEcCCCCeEEEecC-CC--eEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCCCCCc
Q psy11529         15 HAWNNTRQQLAFTPN-NQ--EVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKW   91 (244)
Q Consensus        15 ~~~~~~~~~l~~~~~-d~--~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~   91 (244)
                      .+|+|||++|++++. ++  .|.+|++.+  +  +......++...+..+.|+|+|+.|+.++.++.+++||  +.+++.
T Consensus        41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~--g--~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d--~~~g~~  114 (388)
T 3pe7_A           41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNT--Q--VATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVD--LATLEE  114 (388)
T ss_dssp             CCBCTTSCEEEEEECTTSSCEEEEEETTT--C--EEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEE--TTTCCE
T ss_pred             ccCCCCCCEEEEEEcCCCCceEEEEeCCC--C--ceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEE--CCCCcc
Confidence            789999999998877 66  477888876  4  44444555555555778999999999999899999999  777764


Q ss_pred             eeeEEEeccCcceEEE--EECCCCCeEEEe----------------------eCCCeEEEEEeecCCCceEEEeeecCCC
Q psy11529         92 KPTLVLLRINRAATCV--KWSPLENKFAAG----------------------SGARLISVCYFESENDWWVAKHIKKPIK  147 (244)
Q Consensus        92 ~~~~~~~~~~~~v~~~--~~~~~~~~l~~~----------------------~~d~~i~i~d~~~~~~~~~~~~~~~~~~  147 (244)
                      .....  .+...+...  .++|+++.++..                      ..+..|.+||+.+++.     .....+.
T Consensus       115 ~~~~~--~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~-----~~l~~~~  187 (388)
T 3pe7_A          115 NVVYQ--VPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGES-----TVILQEN  187 (388)
T ss_dssp             EEEEE--CCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCE-----EEEEEES
T ss_pred             eeeee--chhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCce-----EEeecCC
Confidence            43332  233334333  348999988742                      2346788888887753     2222344


Q ss_pred             CceeEEEecC-CCCEEEEeeCC------CeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEec
Q psy11529        148 STITCLDWHP-NNHLLGCGSTD------FKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSK  220 (244)
Q Consensus       148 ~~v~~~~~~p-~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  220 (244)
                      ..+..+.|+| ||+.|+....+      ..|.++|+                  . +.....+..+. ....+..++|+|
T Consensus       188 ~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~------------------~-~~~~~~l~~~~-~~~~~~~~~~sp  247 (388)
T 3pe7_A          188 QWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINE------------------D-GTNMRKVKTHA-EGESCTHEFWVP  247 (388)
T ss_dssp             SCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEET------------------T-SCCCEESCCCC-TTEEEEEEEECT
T ss_pred             ccccccEECCCCCCEEEEEEecCCCCCcceEEEEeC------------------C-CCceEEeeeCC-CCcccccceECC
Confidence            6789999999 99988877653      26777775                  2 22233333331 013578899999


Q ss_pred             CCCEEEEeeC-CC----cEEEEeCCCC
Q psy11529        221 DGNKLCWTSH-DG----SINVRMSQQV  242 (244)
Q Consensus       221 ~~~~l~~~~~-dg----~i~vwd~~~~  242 (244)
                      ||+.|+..+. ++    .|++||+.+.
T Consensus       248 dg~~l~~~~~~~~~~~~~l~~~d~~~g  274 (388)
T 3pe7_A          248 DGSALVYVSYLKGSPDRFIYSADPETL  274 (388)
T ss_dssp             TSSCEEEEEEETTCCCEEEEEECTTTC
T ss_pred             CCCEEEEEecCCCCCcceEEEEecCCC
Confidence            9997765443 22    3999998753

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.83  E-value=2.6e-19  Score=148.09  Aligned_cols=204  Identities=14%  Similarity=0.100  Sum_probs=132.9

Q ss_pred             EEEEEcCCCCeEEEecCC---------CeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEe
Q psy11529         13 TTHAWNNTRQQLAFTPNN---------QEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWT   83 (244)
Q Consensus        13 ~~~~~~~~~~~l~~~~~d---------~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd   83 (244)
                      ..++|||||++|++++.+         +.+.+||+.+  +   ....+..|...+..++|||||+.||.+. ++.|++|+
T Consensus        65 ~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~--~---~~~~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~  138 (740)
T 4a5s_A           65 NDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNK--R---QLITEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKI  138 (740)
T ss_dssp             CEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTT--T---EECCSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEES
T ss_pred             cceEECCCCCEEEEEECCeeeEEEccceEEEEEECCC--C---cEEEcccCCCcceeeEECCCCCEEEEEE-CCeEEEEE
Confidence            347899999999998765         5677999988  4   3445677788899999999999999885 78999999


Q ss_pred             eeCCCCCceeeEEEeccCc-----------------ceEEEEECCCCCeEEEeeCCC-----------------------
Q psy11529         84 QNNDDKKWKPTLVLLRINR-----------------AATCVKWSPLENKFAAGSGAR-----------------------  123 (244)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~-----------------~v~~~~~~~~~~~l~~~~~d~-----------------------  123 (244)
                        ..+++.... ...++..                 ....+.|||||+.||..+.|.                       
T Consensus       139 --~~~~~~~~l-t~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~  215 (740)
T 4a5s_A          139 --EPNLPSYRI-TWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVR  215 (740)
T ss_dssp             --STTSCCEEC-CSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEE
T ss_pred             --CCCCceEEE-cCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCccee
Confidence              666653321 1112221                 123589999999999875321                       


Q ss_pred             -------------eEEEEEeec---CCCceEEEeeec-----CCCCceeEEEecCCCCEEEEeeC----CCeEEEEEeee
Q psy11529        124 -------------LISVCYFES---ENDWWVAKHIKK-----PIKSTITCLDWHPNNHLLGCGST----DFKVRVFSAYI  178 (244)
Q Consensus       124 -------------~i~i~d~~~---~~~~~~~~~~~~-----~~~~~v~~~~~~p~~~~l~~~~~----dg~i~i~d~~~  178 (244)
                                   .|.+||+.+   ++... ......     .+...+..++|+|||+.++....    +..|.+||+.+
T Consensus       216 ~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~t  294 (740)
T 4a5s_A          216 VPYPKAGAVNPTVKFFVVNTDSLSSVTNAT-SIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDE  294 (740)
T ss_dssp             EECCBTTSCCCEEEEEEEETTSCCSSSCCC-EEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEET
T ss_pred             ecCCCCcCcCCeeEEEEEECCCCCCCCcce-EEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCC
Confidence                         467777777   52100 112211     25667899999999997665433    34799999843


Q ss_pred             cccccCCCCCCCCccccccceeEEe--cCCCCCCCCeE-----EEEEecCCCEEE-Eee-CCC--cEEEEeCCC
Q psy11529        179 KDIESAPQSTNWGSKSTLGNCLVEL--NNSSSGGGWIH-----SVAFSKDGNKLC-WTS-HDG--SINVRMSQQ  241 (244)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~-----~~~~s~~~~~l~-~~~-~dg--~i~vwd~~~  241 (244)
                      .+...            .......+  ..+   ...+.     .++|+|||+.|+ ..+ .+|  .|++||+..
T Consensus       295 g~~~~------------~~~~~~~l~~~~~---~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~  353 (740)
T 4a5s_A          295 SSGRW------------NCLVARQHIEMST---TGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDK  353 (740)
T ss_dssp             TTTEE------------EECGGGCEEEECS---SSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTC
T ss_pred             Ccccc------------ceeEEEEeeeccC---CceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCC
Confidence            22000            00001111  223   33333     788999999776 555 344  588888764

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.82  E-value=1.5e-18  Score=141.89  Aligned_cols=197  Identities=12%  Similarity=0.027  Sum_probs=131.1

Q ss_pred             EEEEc--CCCCe-EEEecC-CCeEEEeeeccCC-Ccceeeeeecc-----CCCceEEEEeCCCCCeEEEEeCC-------
Q psy11529         14 THAWN--NTRQQ-LAFTPN-NQEVHLYQYEKAA-NDWSQLDVLDG-----HDLKVTGIDWAPNTNRIVTCSAD-------   76 (244)
Q Consensus        14 ~~~~~--~~~~~-l~~~~~-d~~v~v~~~~~~~-~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~d-------   76 (244)
                      ...|+  |||+. |++++. +..|+++++...+ +   ....+..     |...+..++|+|||+.|++++.+       
T Consensus        81 ~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~---~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~  157 (662)
T 3azo_A           81 PWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGA---VPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPS  157 (662)
T ss_dssp             CEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCC---CCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTT
T ss_pred             cceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCC---CCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCC
Confidence            45565  99998 777654 5567666665000 1   1233443     56788999999999999988876       


Q ss_pred             ---ccEEEEeeeCCC------CCceeeEEEe-ccCcceEEEEECCCCCeEEEeeCC--------CeEEEEEee-cCCCce
Q psy11529         77 ---RNAYVWTQNNDD------KKWKPTLVLL-RINRAATCVKWSPLENKFAAGSGA--------RLISVCYFE-SENDWW  137 (244)
Q Consensus        77 ---~~i~iwd~~~~~------~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d--------~~i~i~d~~-~~~~~~  137 (244)
                         ..|++||  +.+      ++.   ..+. .+...+..++|+|||++|+.++.+        ..|.+||++ ++.. .
T Consensus       158 ~~~~~i~~~~--~~~~~~~~~~~~---~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~-~  231 (662)
T 3azo_A          158 DVRRFLAAVP--LDGSAAADRSAV---RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRF-A  231 (662)
T ss_dssp             CEEEEEEEEE--TTSTTTTCGGGS---EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCE-E
T ss_pred             CceeEEEEEE--CCCCccccCCce---eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcc-c
Confidence               5899999  666      442   2333 455678889999999999987754        479999998 4421 1


Q ss_pred             EEEeeecCCCCceeEEEecCCCCEEEEeeCCC--eEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCC-----C
Q psy11529        138 VAKHIKKPIKSTITCLDWHPNNHLLGCGSTDF--KVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSG-----G  210 (244)
Q Consensus       138 ~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~  210 (244)
                      ........+...+..+.|+|||++++++..++  .|.+||+                  ..++.......+...     .
T Consensus       232 ~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~------------------~~~~~~~l~~~~~~~~~p~w~  293 (662)
T 3azo_A          232 DTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDP------------------ATGAATQLCRREEEFAGPLWT  293 (662)
T ss_dssp             EEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECT------------------TTCCEEESSCCSSBSSCCCCS
T ss_pred             ccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEEC------------------CCCceeecccccccccCcccc
Confidence            12333334457889999999999888888888  4555554                  122222211111000     0


Q ss_pred             CCeEEEEEecCCCEEEEeeCCCcEEEEe
Q psy11529        211 GWIHSVAFSKDGNKLCWTSHDGSINVRM  238 (244)
Q Consensus       211 ~~v~~~~~s~~~~~l~~~~~dg~i~vwd  238 (244)
                      ..+..++|+|+++++++++. +.++||.
T Consensus       294 ~~~~~~~~~~~~~~~~~~~~-~~~~l~~  320 (662)
T 3azo_A          294 PGMRWFAPLANGLIAVVHGK-GAAVLGI  320 (662)
T ss_dssp             TTCCSEEECTTSCEEEEEBS-SSCEEEE
T ss_pred             ccCceEeEeCCCEEEEEEEc-CccEEEE
Confidence            11567899999999999988 9999993

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.82  E-value=3.2e-18  Score=139.96  Aligned_cols=199  Identities=10%  Similarity=0.001  Sum_probs=139.1

Q ss_pred             CCCceEEEEEcCCCCeEEEe--cCCCeEEEeeeccCCCcceeeeeeccCCCceE---------EEEeC--CCCCe-EEEE
Q psy11529          8 GINPVTTHAWNNTRQQLAFT--PNNQEVHLYQYEKAANDWSQLDVLDGHDLKVT---------GIDWA--PNTNR-IVTC   73 (244)
Q Consensus         8 ~~~~v~~~~~~~~~~~l~~~--~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~---------~~~~~--~~~~~-l~~~   73 (244)
                      |...+..++|++++-+++..  +.++...||....  +  .....+..+...+.         ...|+  |||+. |+.+
T Consensus        22 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~--~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~   97 (662)
T 3azo_A           22 RSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRA--D--GAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFT   97 (662)
T ss_dssp             TCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECT--T--SCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEE
T ss_pred             cCCccceeEEcCCeEEEEecCcccCCcEEEEEECC--C--CCcceeCCCCccccccccccCCccceeeeecCCCeEEEEE
Confidence            46789999999887667766  5688999999643  2  33445555665555         56565  99998 7766


Q ss_pred             eC-CccEEEEeeeCC--C-CCceeeEEEec-----cCcceEEEEECCCCCeEEEeeCC----------CeEEEEEeec--
Q psy11529         74 SA-DRNAYVWTQNND--D-KKWKPTLVLLR-----INRAATCVKWSPLENKFAAGSGA----------RLISVCYFES--  132 (244)
Q Consensus        74 ~~-d~~i~iwd~~~~--~-~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~d----------~~i~i~d~~~--  132 (244)
                      +. +..|.+++  ..  . +..   ..+..     +...+..++|+|||+.|++++.+          ..|++||+..  
T Consensus        98 ~~~~~~l~~~~--~~~~g~~~~---~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~  172 (662)
T 3azo_A           98 HFGDQRLYAFE--PDAPGGAVP---RPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSA  172 (662)
T ss_dssp             BTTTCCEEEEC--TTSTTCCCC---EECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTT
T ss_pred             ECCCCeEEEEc--CCCCCCCCC---EeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCc
Confidence            54 45566666  54  2 432   22223     45678899999999999998876          5788999877  


Q ss_pred             ----CCCceEEEeeec-CCCCceeEEEecCCCCEEEEeeCC--------CeEEEEEeeecccccCCCCCCCCcccccc--
Q psy11529        133 ----ENDWWVAKHIKK-PIKSTITCLDWHPNNHLLGCGSTD--------FKVRVFSAYIKDIESAPQSTNWGSKSTLG--  197 (244)
Q Consensus       133 ----~~~~~~~~~~~~-~~~~~v~~~~~~p~~~~l~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~--  197 (244)
                          +..    . ... .+...+..++|+|||++|+.++.+        ..|++||+..                 .+  
T Consensus       173 ~~~~~~~----~-~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~-----------------~g~~  230 (662)
T 3azo_A          173 AADRSAV----R-ELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTE-----------------DGRF  230 (662)
T ss_dssp             TTCGGGS----E-ESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECT-----------------TSCE
T ss_pred             cccCCce----e-EEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECC-----------------CCcc
Confidence                443    2 223 444678889999999999887754        3799999830                 23  


Q ss_pred             -ceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCC--cEEEEeCC
Q psy11529        198 -NCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDG--SINVRMSQ  240 (244)
Q Consensus       198 -~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg--~i~vwd~~  240 (244)
                       +.......+   ...+..++|+|||+++++++.++  .|.+||+.
T Consensus       231 ~~~~~l~~~~---~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~  273 (662)
T 3azo_A          231 ADTRTLLGGP---EEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPA  273 (662)
T ss_dssp             EEEEEEEEET---TBCEEEEEECTTSCEEEEECTTSSCEEEEECTT
T ss_pred             cccEEeCCCC---CceEcceEECCCCeEEEEECCCCCeEEEEEECC
Confidence             333333344   67899999999999888888888  56666653

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.82  E-value=1.1e-17  Score=125.72  Aligned_cols=203  Identities=10%  Similarity=0.043  Sum_probs=145.7

Q ss_pred             CceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeee---------ccCCCceEEEEeCC-CCCeEEEEe-CCcc
Q psy11529         10 NPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVL---------DGHDLKVTGIDWAP-NTNRIVTCS-ADRN   78 (244)
Q Consensus        10 ~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~---------~~~~~~v~~~~~~~-~~~~l~~~~-~d~~   78 (244)
                      .....++++|+|+++++...++.|++|+.++  . ...+..+         .++-.....++++| ++..+++.+ .++.
T Consensus        91 ~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g--~-~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~  167 (329)
T 3fvz_A           91 YLPHGLSIDTDGNYWVTDVALHQVFKLDPHS--K-EGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSR  167 (329)
T ss_dssp             SSEEEEEECTTSCEEEEETTTTEEEEECTTC--S-SCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCE
T ss_pred             CCceEEEECCCCCEEEEECCCCEEEEEeCCC--C-eEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCe
Confidence            3678899999999888888889999999866  2 0134444         23445689999999 788888776 6899


Q ss_pred             EEEEeeeCCCCCceeeEEEec--------cCcceEEEEECCC-CCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCc
Q psy11529         79 AYVWTQNNDDKKWKPTLVLLR--------INRAATCVKWSPL-ENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKST  149 (244)
Q Consensus        79 i~iwd~~~~~~~~~~~~~~~~--------~~~~v~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~  149 (244)
                      |++|+  . +++....+...+        .-.....++++|+ +.++++...++.|++|+.++++.  ........+...
T Consensus       168 I~~~~--~-~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~--~~~~~~~~~~~~  242 (329)
T 3fvz_A          168 IVQFS--P-SGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEF--VREIKHASFGRN  242 (329)
T ss_dssp             EEEEC--T-TSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE--EEEECCTTTTTC
T ss_pred             EEEEc--C-CCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcE--EEEEeccccCCC
Confidence            99999  3 455333332111        1134789999998 67777777789999999886653  111122344567


Q ss_pred             eeEEEecC------CCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEec---CCCCCCCCeEEEEEec
Q psy11529        150 ITCLDWHP------NNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELN---NSSSGGGWIHSVAFSK  220 (244)
Q Consensus       150 v~~~~~~p------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~~s~  220 (244)
                      +..++++|      +|+.+++...+..|++||.                  ..++.+..+.   .+   ...+..++++|
T Consensus       243 ~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~------------------~~g~~~~~~~~~~~~---~~~p~~ia~~~  301 (329)
T 3fvz_A          243 VFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNF------------------SSGEIIDVFKPVRKH---FDMPHDIVASE  301 (329)
T ss_dssp             EEEEEEETTEEEEEECCCCTTCSCCCCEEEEET------------------TTCCEEEEECCSSSC---CSSEEEEEECT
T ss_pred             cceeeecCCEEEEeCCCEEeccCCCcEEEEEEc------------------CCCeEEEEEcCCCCc---cCCeeEEEECC
Confidence            88999999      3333333334558999998                  5677777763   44   67789999999


Q ss_pred             CCCEEEEeeCCCcEEEEeCCC
Q psy11529        221 DGNKLCWTSHDGSINVRMSQQ  241 (244)
Q Consensus       221 ~~~~l~~~~~dg~i~vwd~~~  241 (244)
                      +|.++++...++.|++|+++.
T Consensus       302 dG~lyvad~~~~~I~~~~~~~  322 (329)
T 3fvz_A          302 DGTVYIGDAHTNTVWKFTLTE  322 (329)
T ss_dssp             TSEEEEEESSSCCEEEEEEEE
T ss_pred             CCCEEEEECCCCEEEEEeCCc
Confidence            998888888899999999864

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.81  E-value=8.2e-17  Score=118.43  Aligned_cols=198  Identities=10%  Similarity=0.075  Sum_probs=142.2

Q ss_pred             CceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeec------cCCCceEEEEe-CCCCCeEEEEeC-CccEEE
Q psy11529         10 NPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLD------GHDLKVTGIDW-APNTNRIVTCSA-DRNAYV   81 (244)
Q Consensus        10 ~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~------~~~~~v~~~~~-~~~~~~l~~~~~-d~~i~i   81 (244)
                      ....+++++++++++++...++.|.+|+.+.     +....+.      ++...+.++++ .++++.+++... ++.|.+
T Consensus        30 ~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g-----~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~  104 (286)
T 1q7f_A           30 TEPSGVAVNAQNDIIVADTNNHRIQIFDKEG-----RFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQI  104 (286)
T ss_dssp             SCEEEEEECTTCCEEEEEGGGTEEEEECTTS-----CEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEE
T ss_pred             CCCceEEECCCCCEEEEECCCCEEEEECCCC-----cEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEE
Confidence            4688999999999888888889999999876     3444442      24457889999 467776666543 789999


Q ss_pred             EeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeee-cCCCCceeEEEecCCCC
Q psy11529         82 WTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIK-KPIKSTITCLDWHPNNH  160 (244)
Q Consensus        82 wd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-~~~~~~v~~~~~~p~~~  160 (244)
                      ||  . +++....+. ......+..++++|+++.+++...++.|.+||.+.. .   ..... ..+...+..++++|+|+
T Consensus       105 ~d--~-~g~~~~~~~-~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~-~---~~~~~~~~~~~~p~~i~~~~~g~  176 (286)
T 1q7f_A          105 YN--Q-YGQFVRKFG-ATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGN-V---LHKFGCSKHLEFPNGVVVNDKQE  176 (286)
T ss_dssp             EC--T-TSCEEEEEC-TTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSC-E---EEEEECTTTCSSEEEEEECSSSE
T ss_pred             EC--C-CCcEEEEec-CccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCC-E---EEEeCCCCccCCcEEEEECCCCC
Confidence            99  4 444322221 123456889999999987777777899999985432 1   12221 13345689999999999


Q ss_pred             EEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCC-cEEEEeC
Q psy11529        161 LLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDG-SINVRMS  239 (244)
Q Consensus       161 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-~i~vwd~  239 (244)
                      ++++...++.|++||.                   .++.+..+..+. ....+..++++++|+++++...++ .|.+||.
T Consensus       177 l~v~~~~~~~i~~~~~-------------------~g~~~~~~~~~g-~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~  236 (286)
T 1q7f_A          177 IFISDNRAHCVKVFNY-------------------EGQYLRQIGGEG-ITNYPIGVGINSNGEILIADNHNNFNLTIFTQ  236 (286)
T ss_dssp             EEEEEGGGTEEEEEET-------------------TCCEEEEESCTT-TSCSEEEEEECTTCCEEEEECSSSCEEEEECT
T ss_pred             EEEEECCCCEEEEEcC-------------------CCCEEEEEccCC-ccCCCcEEEECCCCCEEEEeCCCCEEEEEECC
Confidence            8888778899999995                   345555554320 025688999999999888887776 9999996


Q ss_pred             C
Q psy11529        240 Q  240 (244)
Q Consensus       240 ~  240 (244)
                      +
T Consensus       237 ~  237 (286)
T 1q7f_A          237 D  237 (286)
T ss_dssp             T
T ss_pred             C
Confidence            5

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.80  E-value=7.7e-17  Score=119.19  Aligned_cols=199  Identities=11%  Similarity=0.046  Sum_probs=136.3

Q ss_pred             CCCceEEEEEcCCCC-eEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeC
Q psy11529          8 GINPVTTHAWNNTRQ-QLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNN   86 (244)
Q Consensus         8 ~~~~v~~~~~~~~~~-~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~   86 (244)
                      +.....+++|+|+|+ +++++..++.|..|+..+     . ...+..+...+.+++++|+|+++++...++.|.+||  .
T Consensus        26 ~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~-----~-~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d--~   97 (296)
T 3e5z_A           26 GFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDG-----Q-LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQR--E   97 (296)
T ss_dssp             CCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTS-----C-EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEEC--S
T ss_pred             CCccccCCeEeCCCCEEEEEeCCCCEEEEEECCC-----C-eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEc--C
Confidence            456678999999998 777888889999999987     3 445556777899999999999887776678999999  7


Q ss_pred             CCCCceeeEEEec--cCcceEEEEECCCCCeEEE----eeC-----------CCeEEEEEeecCCCceEEEeeecCCCCc
Q psy11529         87 DDKKWKPTLVLLR--INRAATCVKWSPLENKFAA----GSG-----------ARLISVCYFESENDWWVAKHIKKPIKST  149 (244)
Q Consensus        87 ~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~----~~~-----------d~~i~i~d~~~~~~~~~~~~~~~~~~~~  149 (244)
                      .+++.........  ....+..++++|+|+++++    ++.           .+.-.||.++....   ... .......
T Consensus        98 ~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~g~---~~~-~~~~~~~  173 (296)
T 3e5z_A           98 PGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPDGT---LSA-PIRDRVK  173 (296)
T ss_dssp             TTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTTSC---EEE-EECCCSS
T ss_pred             CCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCCCC---EEE-eecCCCC
Confidence            6776433221111  1234678999999998886    321           01224555554432   122 2233456


Q ss_pred             eeEEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccce---eEEecCCCCCCCCeEEEEEecCCCEEE
Q psy11529        150 ITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNC---LVELNNSSSGGGWIHSVAFSKDGNKLC  226 (244)
Q Consensus       150 v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~v~~~~~s~~~~~l~  226 (244)
                      ...++|+|+++.+++.+.++.|.+|++..                 .++.   ...+..+   ...+..++++++|++++
T Consensus       174 ~~gi~~s~dg~~lv~~~~~~~i~~~~~~~-----------------~g~~~~~~~~~~~~---~~~p~~i~~d~~G~l~v  233 (296)
T 3e5z_A          174 PNGLAFLPSGNLLVSDTGDNATHRYCLNA-----------------RGETEYQGVHFTVE---PGKTDGLRVDAGGLIWA  233 (296)
T ss_dssp             EEEEEECTTSCEEEEETTTTEEEEEEECS-----------------SSCEEEEEEEECCS---SSCCCSEEEBTTSCEEE
T ss_pred             CccEEECCCCCEEEEeCCCCeEEEEEECC-----------------CCcCcCCCeEeeCC---CCCCCeEEECCCCCEEE
Confidence            78999999999887777789999999841                 1222   1222222   45566788888888666


Q ss_pred             EeeCCCcEEEEeCC
Q psy11529        227 WTSHDGSINVRMSQ  240 (244)
Q Consensus       227 ~~~~dg~i~vwd~~  240 (244)
                      +.  ++.|.+||.+
T Consensus       234 ~~--~~~v~~~~~~  245 (296)
T 3e5z_A          234 SA--GDGVHVLTPD  245 (296)
T ss_dssp             EE--TTEEEEECTT
T ss_pred             Ec--CCeEEEECCC
Confidence            55  6778888765

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.80  E-value=1e-16  Score=120.30  Aligned_cols=206  Identities=14%  Similarity=0.068  Sum_probs=140.5

Q ss_pred             CCceEEEEEcCCCCeEEEecCC------------------------CeEEEeeeccCCCcceeeeeec-cCCCceEEEEe
Q psy11529          9 INPVTTHAWNNTRQQLAFTPNN------------------------QEVHLYQYEKAANDWSQLDVLD-GHDLKVTGIDW   63 (244)
Q Consensus         9 ~~~v~~~~~~~~~~~l~~~~~d------------------------~~v~v~~~~~~~~~~~~~~~~~-~~~~~v~~~~~   63 (244)
                      -+.+.+++++|+|+++++...+                        +.|.+||..+  +  +....+. ++-.....+++
T Consensus        23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~--g--~~~~~~~~~~~~~p~gia~   98 (329)
T 3fvz_A           23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNN--A--EILQSSGKNLFYLPHGLSI   98 (329)
T ss_dssp             CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTT--C--CEEEEECTTTCSSEEEEEE
T ss_pred             cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCC--C--eEEeccCCCccCCceEEEE
Confidence            4679999999999999887766                        4799999875  3  3333333 34457889999


Q ss_pred             CCCCCeEEEEeCCccEEEEeeeCCCCCceeeEEE---------eccCcceEEEEECC-CCCeEEEee-CCCeEEEEEeec
Q psy11529         64 APNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVL---------LRINRAATCVKWSP-LENKFAAGS-GARLISVCYFES  132 (244)
Q Consensus        64 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---------~~~~~~v~~~~~~~-~~~~l~~~~-~d~~i~i~d~~~  132 (244)
                      +|+|+++++...++.|++||  ..... .....+         ..+-.....++++| ++..+++.+ .++.|++|+. .
T Consensus        99 d~~g~l~v~d~~~~~v~~~~--~~g~~-~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~-~  174 (329)
T 3fvz_A           99 DTDGNYWVTDVALHQVFKLD--PHSKE-GPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSP-S  174 (329)
T ss_dssp             CTTSCEEEEETTTTEEEEEC--TTCSS-CCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECT-T
T ss_pred             CCCCCEEEEECCCCEEEEEe--CCCCe-EEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcC-C
Confidence            99999888888889999999  54331 112222         12334688999999 777777775 6899999983 3


Q ss_pred             CCCceEEEeee------cCCCCceeEEEecCC-CCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecC
Q psy11529        133 ENDWWVAKHIK------KPIKSTITCLDWHPN-NHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNN  205 (244)
Q Consensus       133 ~~~~~~~~~~~------~~~~~~v~~~~~~p~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (244)
                      +..........      ...-.....++++|+ ++++++...+++|++||.                  .+++.+..+..
T Consensus       175 g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~------------------~~G~~~~~~~~  236 (329)
T 3fvz_A          175 GKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKT------------------DTKEFVREIKH  236 (329)
T ss_dssp             SCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEET------------------TTCCEEEEECC
T ss_pred             CCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEEC------------------CCCcEEEEEec
Confidence            33211111000      011234789999998 777777778899999997                  45777776643


Q ss_pred             CCCCCCCeEEEEEec------CCCEEEEeeCCCcEEEEeCCC
Q psy11529        206 SSSGGGWIHSVAFSK------DGNKLCWTSHDGSINVRMSQQ  241 (244)
Q Consensus       206 ~~~~~~~v~~~~~s~------~~~~l~~~~~dg~i~vwd~~~  241 (244)
                      .. ....+..++|+|      +|+.+++...+..|++||+.+
T Consensus       237 ~~-~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~  277 (329)
T 3fvz_A          237 AS-FGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSS  277 (329)
T ss_dssp             TT-TTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTT
T ss_pred             cc-cCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCC
Confidence            20 056788999999      444333334455899999754

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.78  E-value=9.1e-16  Score=115.25  Aligned_cols=202  Identities=10%  Similarity=0.025  Sum_probs=135.7

Q ss_pred             CCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCC----ccEEEEee
Q psy11529          9 INPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSAD----RNAYVWTQ   84 (244)
Q Consensus         9 ~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----~~i~iwd~   84 (244)
                      ...+.+++|+|+|++++++..++.|.+|+..+  +  +.......+...+.+++++|+++++++...+    +.|.+|| 
T Consensus        44 ~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~--~--~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d-  118 (333)
T 2dg1_A           44 GLQLEGLNFDRQGQLFLLDVFEGNIFKINPET--K--EIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAAT-  118 (333)
T ss_dssp             CCCEEEEEECTTSCEEEEETTTCEEEEECTTT--C--CEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEEC-
T ss_pred             CccccCcEECCCCCEEEEECCCCEEEEEeCCC--C--cEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEe-
Confidence            45678999999999888888889999999876  4  2222222466789999999999887777655    6899999 


Q ss_pred             eCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCC----CeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCC
Q psy11529         85 NNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGA----RLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNH  160 (244)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~  160 (244)
                       ..++..............+..++++|+++.+++...+    ....+|.++.....  ..... .....+..++|+|+++
T Consensus       119 -~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~--~~~~~-~~~~~~~~i~~~~dg~  194 (333)
T 2dg1_A          119 -ENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRT--VTPII-QNISVANGIALSTDEK  194 (333)
T ss_dssp             -TTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCC--EEEEE-EEESSEEEEEECTTSS
T ss_pred             -CCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCE--EEEee-cCCCcccceEECCCCC
Confidence             6666543222111234568999999999877765431    23445555433210  11111 1224578899999998


Q ss_pred             EEE-EeeCCCeEEEEEeeecccccCCCCCCCCcccccccee--------EEecCCCCCCCCeEEEEEecCCCEEEEeeCC
Q psy11529        161 LLG-CGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCL--------VELNNSSSGGGWIHSVAFSKDGNKLCWTSHD  231 (244)
Q Consensus       161 ~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d  231 (244)
                      .|+ +.+.++.|.+||+..                 .+..+        ..+..    ...+..++++++|+++++...+
T Consensus       195 ~l~v~~~~~~~i~~~d~~~-----------------~g~~~~~~~~~~~~~~~~----~~~~~~i~~d~~G~l~v~~~~~  253 (333)
T 2dg1_A          195 VLWVTETTANRLHRIALED-----------------DGVTIQPFGATIPYYFTG----HEGPDSCCIDSDDNLYVAMYGQ  253 (333)
T ss_dssp             EEEEEEGGGTEEEEEEECT-----------------TSSSEEEEEEEEEEECCS----SSEEEEEEEBTTCCEEEEEETT
T ss_pred             EEEEEeCCCCeEEEEEecC-----------------CCcCcccccceEEEecCC----CCCCCceEECCCCCEEEEEcCC
Confidence            654 445678999999831                 11111        11111    2357889999999988887778


Q ss_pred             CcEEEEeCC
Q psy11529        232 GSINVRMSQ  240 (244)
Q Consensus       232 g~i~vwd~~  240 (244)
                      +.|.+||.+
T Consensus       254 ~~v~~~d~~  262 (333)
T 2dg1_A          254 GRVLVFNKR  262 (333)
T ss_dssp             TEEEEECTT
T ss_pred             CEEEEECCC
Confidence            999999875

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.78  E-value=6.9e-18  Score=129.34  Aligned_cols=199  Identities=11%  Similarity=-0.025  Sum_probs=126.4

Q ss_pred             eEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEE--eCCCCCeEEEE----------------
Q psy11529         12 VTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGID--WAPNTNRIVTC----------------   73 (244)
Q Consensus        12 v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~l~~~----------------   73 (244)
                      +..++|+|||+.|++++.++.|++||+.+  +  +....+..+...+....  ++|++++++..                
T Consensus        83 ~~~~~~spdg~~l~~~~~~~~l~~~d~~~--g--~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~  158 (388)
T 3pe7_A           83 TFGGFLSPDDDALFYVKDGRNLMRVDLAT--L--EENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKF  158 (388)
T ss_dssp             SSSCEECTTSSEEEEEETTTEEEEEETTT--C--CEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHH
T ss_pred             ccceEEcCCCCEEEEEeCCCeEEEEECCC--C--cceeeeechhhcccccceeECCCCCeeccccccCcccccccccchh
Confidence            34678999999999999889999999987  4  33333444455454443  48999988742                


Q ss_pred             ------eCCccEEEEeeeCCCCCceeeEEEeccCcceEEEEECC-CCCeEEEeeCCC------eEEEEEeecCCCceEEE
Q psy11529         74 ------SADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSP-LENKFAAGSGAR------LISVCYFESENDWWVAK  140 (244)
Q Consensus        74 ------~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~------~i~i~d~~~~~~~~~~~  140 (244)
                            ..+..|.+||  +.+++..   .+..+...+..++|+| +|+.|+.+..++      .|.++|.+....    .
T Consensus       159 ~~~~~~~~~~~l~~~d--~~~g~~~---~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~----~  229 (388)
T 3pe7_A          159 HEFYFTKPCCRLMRVD--LKTGEST---VILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM----R  229 (388)
T ss_dssp             HHHGGGCCCEEEEEEE--TTTCCEE---EEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC----E
T ss_pred             hhhhccCCcceEEEEE--CCCCceE---EeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce----E
Confidence                  2346788899  7777633   2334566789999999 999988876532      566666555433    2


Q ss_pred             eeecCCC-CceeEEEecCCCCEEEEeeC-CC----eEEEEEeeecccccCCCCCCCCccccccc--eeEEecCCCCCCCC
Q psy11529        141 HIKKPIK-STITCLDWHPNNHLLGCGST-DF----KVRVFSAYIKDIESAPQSTNWGSKSTLGN--CLVELNNSSSGGGW  212 (244)
Q Consensus       141 ~~~~~~~-~~v~~~~~~p~~~~l~~~~~-dg----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~  212 (244)
                      ....... ..+..+.|+|||+.|+..+. ++    .|++||+.                  +++  .+..+..+......
T Consensus       230 ~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~------------------~g~~~~l~~~~~~~~~~~~  291 (388)
T 3pe7_A          230 KVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPE------------------TLENRQLTSMPACSHLMSN  291 (388)
T ss_dssp             ESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTT------------------TCCEEEEEEECCEEEEEEC
T ss_pred             EeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecC------------------CCceEEEEcCCCceeeeec
Confidence            2222221 35778999999997765443 22    39999983                  333  22222221000000


Q ss_pred             eEEEEEecCCCEEEEe---------eCCCcEEEEeCCC
Q psy11529        213 IHSVAFSKDGNKLCWT---------SHDGSINVRMSQQ  241 (244)
Q Consensus       213 v~~~~~s~~~~~l~~~---------~~dg~i~vwd~~~  241 (244)
                      ...++|+|||+.|+..         ..+..|++||+.+
T Consensus       292 ~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~  329 (388)
T 3pe7_A          292 YDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKN  329 (388)
T ss_dssp             TTSSEEEEEECCC------------CCCCEEEEEETTT
T ss_pred             CCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccC
Confidence            1123799999987754         4466899999875

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.78  E-value=3.6e-16  Score=118.77  Aligned_cols=196  Identities=9%  Similarity=-0.026  Sum_probs=125.3

Q ss_pred             EEEEcCCCCeEEEec----------CCCeEEEeeeccCCCcceeeeeeccC------CCceEEEEeCCCCCeEEEEeC--
Q psy11529         14 THAWNNTRQQLAFTP----------NNQEVHLYQYEKAANDWSQLDVLDGH------DLKVTGIDWAPNTNRIVTCSA--   75 (244)
Q Consensus        14 ~~~~~~~~~~l~~~~----------~d~~v~v~~~~~~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~~~~~--   75 (244)
                      .++|+|||++++++.          .++.|.+||..+  .  +.+..+...      ......++++|+|++|+++..  
T Consensus        54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t--~--~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~  129 (361)
T 2oiz_A           54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADK--L--TFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASP  129 (361)
T ss_dssp             EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTT--C--CEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESS
T ss_pred             ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcC--C--cEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCC
Confidence            899999999998875          256799999876  3  444444322      234667999999999998864  


Q ss_pred             CccEEEEeeeCCCCCceeeEEEeccCcceEEEEECCCC-CeEEEeeCCCeEEEEEeec----------------------
Q psy11529         76 DRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLE-NKFAAGSGARLISVCYFES----------------------  132 (244)
Q Consensus        76 d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~i~d~~~----------------------  132 (244)
                      ++.|.+||  ..+++....+  ... .....+.+.|++ ..+++.+.|+.+.+|+++.                      
T Consensus       130 ~~~v~v~d--~~~~~~~~~~--i~~-~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~  204 (361)
T 2oiz_A          130 ATSIGIVD--VAKGDYVEDV--TAA-AGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIF  204 (361)
T ss_dssp             SEEEEEEE--TTTTEEEEEE--GGG-TTEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBC
T ss_pred             CCeEEEEE--CCCCcEEEEE--ecC-CCcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCceE
Confidence            68999999  6766532210  111 111223344433 3344444444444444432                      


Q ss_pred             --------------------------CCCceEEEeeecC----C----CCceeEEEecCCCCEEEEeeC-----------
Q psy11529        133 --------------------------ENDWWVAKHIKKP----I----KSTITCLDWHPNNHLLGCGST-----------  167 (244)
Q Consensus       133 --------------------------~~~~~~~~~~~~~----~----~~~v~~~~~~p~~~~l~~~~~-----------  167 (244)
                                                .............    .    ......++|+|+++.++++..           
T Consensus       205 ~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~  284 (361)
T 2oiz_A          205 IAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFP  284 (361)
T ss_dssp             SCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCC
T ss_pred             EEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCC
Confidence                                      2210000000000    0    011112788999887776543           


Q ss_pred             CCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCCC
Q psy11529        168 DFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQV  242 (244)
Q Consensus       168 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~  242 (244)
                      .+.|.+||+                  .+.+.+..+..+   .  +.+++|+|||++|++++. +.|.+||+++.
T Consensus       285 ~~~v~viD~------------------~t~~~v~~i~~~---~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~  335 (361)
T 2oiz_A          285 AAEIWVMDT------------------KTKQRVARIPGR---D--ALSMTIDQQRNLMLTLDG-GNVNVYDISQP  335 (361)
T ss_dssp             CSEEEEEET------------------TTTEEEEEEECT---T--CCEEEEETTTTEEEEECS-SCEEEEECSSS
T ss_pred             CceEEEEEC------------------CCCcEEEEEecC---C--eeEEEECCCCCEEEEeCC-CeEEEEECCCC
Confidence            348999998                  778889988885   5  999999999999998886 99999999875

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.77  E-value=1e-15  Score=113.14  Aligned_cols=199  Identities=12%  Similarity=0.123  Sum_probs=136.2

Q ss_pred             CCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeee-cc-CCCceEEEEeCCCCCeEEEE----eC------
Q psy11529          8 GINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVL-DG-HDLKVTGIDWAPNTNRIVTC----SA------   75 (244)
Q Consensus         8 ~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~-~~-~~~~v~~~~~~~~~~~l~~~----~~------   75 (244)
                      +...+.+++++|+|+++++...++.|.+|+..+  +........ .+ ....+..++++|+|+++++.    +.      
T Consensus        67 ~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~--g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~  144 (296)
T 3e5z_A           67 PSHHQNGHCLNKQGHLIACSHGLRRLERQREPG--GEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGY  144 (296)
T ss_dssp             SCSSEEEEEECTTCCEEEEETTTTEEEEECSTT--CCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSS
T ss_pred             CCCCcceeeECCCCcEEEEecCCCeEEEEcCCC--CcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccc
Confidence            456789999999999888777778999999865  322222111 11 12346789999999988873    21      


Q ss_pred             -------CccEEEEeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCc-eEEEeeecCCC
Q psy11529         76 -------DRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDW-WVAKHIKKPIK  147 (244)
Q Consensus        76 -------d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-~~~~~~~~~~~  147 (244)
                             .+.|..++  .. ++.   .....+......++|+|+++.+++.+.++.|.+|+++..... ...... ....
T Consensus       145 ~~~~~~~~~~l~~~~--~~-g~~---~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~-~~~~  217 (296)
T 3e5z_A          145 GGEMELPGRWVFRLA--PD-GTL---SAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHF-TVEP  217 (296)
T ss_dssp             CCCCCSSSCEEEEEC--TT-SCE---EEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEE-CCSS
T ss_pred             cccccCCCcEEEEEC--CC-CCE---EEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEe-eCCC
Confidence                   23455555  43 442   223345567789999999999877777899999999733321 111222 3345


Q ss_pred             CceeEEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEE-ecCCCEEE
Q psy11529        148 STITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAF-SKDGNKLC  226 (244)
Q Consensus       148 ~~v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-s~~~~~l~  226 (244)
                      ..+..++++++|+++++.  ++.|.+||.                   .++.+..+..+   .. +.+++| +|+++.|+
T Consensus       218 ~~p~~i~~d~~G~l~v~~--~~~v~~~~~-------------------~g~~~~~~~~~---~~-~~~~~f~~~d~~~L~  272 (296)
T 3e5z_A          218 GKTDGLRVDAGGLIWASA--GDGVHVLTP-------------------DGDELGRVLTP---QT-TSNLCFGGPEGRTLY  272 (296)
T ss_dssp             SCCCSEEEBTTSCEEEEE--TTEEEEECT-------------------TSCEEEEEECS---SC-CCEEEEESTTSCEEE
T ss_pred             CCCCeEEECCCCCEEEEc--CCeEEEECC-------------------CCCEEEEEECC---CC-ceeEEEECCCCCEEE
Confidence            567889999999876665  788999996                   36777777776   55 899999 58999888


Q ss_pred             EeeCCCcEEEEeCCC
Q psy11529        227 WTSHDGSINVRMSQQ  241 (244)
Q Consensus       227 ~~~~dg~i~vwd~~~  241 (244)
                      .++.++ +.-++.++
T Consensus       273 v~t~~~-l~~~~~~~  286 (296)
T 3e5z_A          273 MTVSTE-FWSIETNV  286 (296)
T ss_dssp             EEETTE-EEEEECSC
T ss_pred             EEcCCe-EEEEEccc
Confidence            887764 44445543

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.76  E-value=2e-16  Score=130.38  Aligned_cols=199  Identities=7%  Similarity=-0.012  Sum_probs=132.3

Q ss_pred             ceEEEEEcCCCCeEEEecCCC-----eEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCcc-------
Q psy11529         11 PVTTHAWNNTRQQLAFTPNNQ-----EVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRN-------   78 (244)
Q Consensus        11 ~v~~~~~~~~~~~l~~~~~d~-----~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~-------   78 (244)
                      .+..++|||||++||++..++     .|++||+.+  +  +...... ....+..++|+|||+.|+.++.++.       
T Consensus       126 ~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~t--g--~~~~~~~-~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~  200 (710)
T 2xdw_A          126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDG--A--KELPDVL-ERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGT  200 (710)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTT--T--EEEEEEE-EEECSCCEEECTTSSEEEEEECCCCSSCCSSS
T ss_pred             EEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCC--C--CCCcccc-cCcccceEEEEeCCCEEEEEEECCcccccccc
Confidence            578899999999999875433     899999987  4  3322211 1223678999999999998887765       


Q ss_pred             ---------EEEEeeeCCCCCceeeEEEec--cCcceEEEEECCCCCeEEEeeC-----CCeEEEEEeec------CCCc
Q psy11529         79 ---------AYVWTQNNDDKKWKPTLVLLR--INRAATCVKWSPLENKFAAGSG-----ARLISVCYFES------ENDW  136 (244)
Q Consensus        79 ---------i~iwd~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~-----d~~i~i~d~~~------~~~~  136 (244)
                               |++|+  +.++..........  +...+..+.|+|||++|+.++.     +..+.+||+.+      +.. 
T Consensus       201 ~~~~~~~~~v~~~~--l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~-  277 (710)
T 2xdw_A          201 ETSTNLHQKLYYHV--LGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGIL-  277 (710)
T ss_dssp             CCCCCCCCEEEEEE--TTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSC-
T ss_pred             ccccCCCCEEEEEE--CCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCcc-
Confidence                     99999  66665332232222  3455789999999999888764     56899999886      421 


Q ss_pred             eEEEeeecCCCCceeEEEecCCCCEEEEeeCC----CeEEEEEeeecccccCCCCCCCCccccccc--eeEEecCCCCCC
Q psy11529        137 WVAKHIKKPIKSTITCLDWHPNNHLLGCGSTD----FKVRVFSAYIKDIESAPQSTNWGSKSTLGN--CLVELNNSSSGG  210 (244)
Q Consensus       137 ~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~  210 (244)
                       ..... ..+...+.. .|+|+|+.|+..+..    +.|.+||+.                  .+.  ....+..+.. .
T Consensus       278 -~~~~l-~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~------------------~~~~~~~~~l~~~~~-~  335 (710)
T 2xdw_A          278 -KWVKL-IDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFT------------------DPEESKWKVLVPEHE-K  335 (710)
T ss_dssp             -CCEEE-ECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETT------------------SCCGGGCEEEECCCS-S
T ss_pred             -ceEEe-eCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCC------------------CCCcccceeccCCCC-C
Confidence             01122 223333333 588999877766653    368899973                  221  1233333310 2


Q ss_pred             CCeEEEEEecCCCEEEEeeCCCc--EEEEeC
Q psy11529        211 GWIHSVAFSKDGNKLCWTSHDGS--INVRMS  239 (244)
Q Consensus       211 ~~v~~~~~s~~~~~l~~~~~dg~--i~vwd~  239 (244)
                      ..+..++|++++.++++...|+.  |.+|++
T Consensus       336 ~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~  366 (710)
T 2xdw_A          336 DVLEWVACVRSNFLVLCYLHDVKNTLQLHDL  366 (710)
T ss_dssp             CEEEEEEEETTTEEEEEEEETTEEEEEEEET
T ss_pred             CeEEEEEEEcCCEEEEEEEECCEEEEEEEEC
Confidence            36888999988888888888885  566676

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.76  E-value=1.5e-16  Score=120.09  Aligned_cols=184  Identities=9%  Similarity=0.150  Sum_probs=120.1

Q ss_pred             CceEEEEEcCCCCeEEEecCC---C--eEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeC---------
Q psy11529         10 NPVTTHAWNNTRQQLAFTPNN---Q--EVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSA---------   75 (244)
Q Consensus        10 ~~v~~~~~~~~~~~l~~~~~d---~--~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---------   75 (244)
                      ..+..++|+|||++|++++.+   +  .|++|++.+  +  +...... +.. +..++|+|+|+.|+.++.         
T Consensus        59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~--g--~~~~l~~-~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~  132 (347)
T 2gop_A           59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLET--L--SSKKILE-AKN-IRSLEWNEDSRKLLIVGFKRREDEDFI  132 (347)
T ss_dssp             ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTT--T--EEEEEEE-ESE-EEEEEECTTSSEEEEEEECCCC-----
T ss_pred             ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCC--C--ceEEEEc-CCC-ccceeECCCCCEEEEEEccCCCcCCcE
Confidence            357789999999999887643   3  477777766  4  3332222 334 999999999999888763         


Q ss_pred             ------------------CccEEEEeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCC-------eEEEEEe
Q psy11529         76 ------------------DRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGAR-------LISVCYF  130 (244)
Q Consensus        76 ------------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-------~i~i~d~  130 (244)
                                        ...|.+||  +.+++....+.  . . .+..++|+|+| .++++..+.       ...+|.+
T Consensus       133 ~~~~~~~~~~g~~~~~~~~~~l~~~d--~~~~~~~~~l~--~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~  205 (347)
T 2gop_A          133 FEDDVPAWFDDLGFFDGEKTTFWIFD--TESEEVIEEFE--K-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIW  205 (347)
T ss_dssp             ----CCCC---------CEEEEEEEE--TTTTEEEEEEE--E-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEE
T ss_pred             EEcccceeecCcccccCccceEEEEE--CCCCeEEeeec--C-C-CcccccCCCCe-EEEEEecccccccccccccEEEe
Confidence                              25688888  77776422232  2 3 78899999999 777765542       4567766


Q ss_pred             ecCCCceEEEeeecCCCCceeEEEecCCCCEEEEeeCCC--------eEEEEEeeecccccCCCCCCCCccccccceeEE
Q psy11529        131 ESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDF--------KVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVE  202 (244)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg--------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (244)
                      + ...   ...... + ..+..+  +|+|++|+.++.++        .|.+|| .                   ++....
T Consensus       206 d-~~~---~~~l~~-~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d-~-------------------~~~~~l  257 (347)
T 2gop_A          206 E-DGK---EEKMFE-K-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD-G-------------------KEVMGI  257 (347)
T ss_dssp             E-TTE---EEEEEE-E-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC-S-------------------SCEEES
T ss_pred             C-CCc---eEEecc-C-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC-C-------------------CceEec
Confidence            6 322   122211 2 344444  99999888777543        566665 1                   222222


Q ss_pred             ecCCCCCCCCeEE-EEEecCCCEEEEeeCCCcEEEEeCC
Q psy11529        203 LNNSSSGGGWIHS-VAFSKDGNKLCWTSHDGSINVRMSQ  240 (244)
Q Consensus       203 ~~~~~~~~~~v~~-~~~s~~~~~l~~~~~dg~i~vwd~~  240 (244)
                      ...+   ...+.. +.|+ |+ ++++++.++.++|| +.
T Consensus       258 ~~~~---~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~  290 (347)
T 2gop_A          258 LDEV---DRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IW  290 (347)
T ss_dssp             STTC---CSEEEEEEEET-TE-EEEEEEETTEEEEE-EE
T ss_pred             cccC---CcccCCccEEc-Cc-EEEEEecCCcEEEE-Ec
Confidence            3333   556775 8898 88 88888888888888 65

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.76  E-value=4.3e-17  Score=125.11  Aligned_cols=190  Identities=10%  Similarity=-0.002  Sum_probs=125.9

Q ss_pred             EEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEE-------------------EEeCCCCCeEEEE--
Q psy11529         15 HAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTG-------------------IDWAPNTNRIVTC--   73 (244)
Q Consensus        15 ~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~-------------------~~~~~~~~~l~~~--   73 (244)
                      +.|+|||++|++++.++.|++|++.+  +  +.......+......                   +.|+|+++.++.+  
T Consensus        86 ~~~spdg~~l~~~~~~~~l~~~d~~~--~--~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~  161 (396)
T 3c5m_A           86 GFISTDERAFFYVKNELNLMKVDLET--L--EEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEF  161 (396)
T ss_dssp             CEECTTSSEEEEEETTTEEEEEETTT--C--CEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHH
T ss_pred             ceECCCCCEEEEEEcCCcEEEEECCC--C--CcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeee
Confidence            78999999999998888999999977  4  222222323322222                   3567888877654  


Q ss_pred             ---eCCccEEEEeeeCCCCCceeeEEEeccCcceEEEEECC-CCCeEEEeeCC------CeEEEEEeecCCCceEEEeee
Q psy11529         74 ---SADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSP-LENKFAAGSGA------RLISVCYFESENDWWVAKHIK  143 (244)
Q Consensus        74 ---~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d------~~i~i~d~~~~~~~~~~~~~~  143 (244)
                         ..+..|.+||  +.+++....   ..+...+..+.|+| +++.|+..+.+      ..|.+||++....    ....
T Consensus       162 ~~~~~~~~l~~~d--~~~g~~~~~---~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~----~~l~  232 (396)
T 3c5m_A          162 YHTNPTCRLIKVD--IETGELEVI---HQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNV----RKIK  232 (396)
T ss_dssp             HHTCCCEEEEEEE--TTTCCEEEE---EEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCC----EESS
T ss_pred             ccCCCcceEEEEE--CCCCcEEee---ccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCce----eEee
Confidence               3567899999  777764322   34567789999999 78877776543      3577777655432    2222


Q ss_pred             cCC-CCceeEEEecCCCCEEEEeeCC-----CeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEE
Q psy11529        144 KPI-KSTITCLDWHPNNHLLGCGSTD-----FKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVA  217 (244)
Q Consensus       144 ~~~-~~~v~~~~~~p~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  217 (244)
                      ... ...+..++|+|+|++|+..+.+     +.|++||+                  ..++.......    .. .. +.
T Consensus       233 ~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~------------------~~g~~~~l~~~----~~-~~-~~  288 (396)
T 3c5m_A          233 EHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANP------------------ETLENEEVMVM----PP-CS-HL  288 (396)
T ss_dssp             CCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECT------------------TTCCEEEEEEC----CS-EE-EE
T ss_pred             ccCCCccccceEECCCCCEEEEEecCCCCccceEEEEEC------------------CCCCeEEeeeC----CC-CC-CC
Confidence            221 2357889999999987776544     45999998                  33433222221    21 23 89


Q ss_pred             Eec-CCCEEEEee----------------CCCcEEEEeCCC
Q psy11529        218 FSK-DGNKLCWTS----------------HDGSINVRMSQQ  241 (244)
Q Consensus       218 ~s~-~~~~l~~~~----------------~dg~i~vwd~~~  241 (244)
                      |+| ||+++++++                .++.|++||+.+
T Consensus       289 ~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~  329 (396)
T 3c5m_A          289 MSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKA  329 (396)
T ss_dssp             EECSSSSEEEEEECCC----------CCCCCCEEEEEETTT
T ss_pred             ccCCCCceEEEecCCcceeeccccccccCCCCcEEEEeccc
Confidence            999 999888754                246899999864

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.75  E-value=5.4e-16  Score=113.00  Aligned_cols=197  Identities=11%  Similarity=-0.056  Sum_probs=139.8

Q ss_pred             CceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeec-cCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCCC
Q psy11529         10 NPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLD-GHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDD   88 (244)
Q Consensus        10 ~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~   88 (244)
                      ..+.+++++++|+++++.. ++.|.+|+..+  .   ....+. .....+.+++++++|+.+++...++.|.+|+  ..+
T Consensus        67 ~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~--~---~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~--~~~  138 (270)
T 1rwi_B           67 YQPQGLAVDGAGTVYVTDF-NNRVVTLAAGS--N---NQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLA--AGS  138 (270)
T ss_dssp             CSCCCEEECTTCCEEEEET-TTEEEEECTTC--S---CCEECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEEC--TTC
T ss_pred             CCcceeEECCCCCEEEEcC-CCEEEEEeCCC--c---eEeeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEE--CCC
Confidence            4677899999999766665 88999999876  3   222222 2235688999999998777777788999998  544


Q ss_pred             CCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEeeCC
Q psy11529         89 KKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTD  168 (244)
Q Consensus        89 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d  168 (244)
                      ...  ..........+..++++|+++.+++...++.|.+|+.+....    ..........+..++++++|.++++...+
T Consensus       139 ~~~--~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~----~~~~~~~~~~p~~i~~d~~g~l~v~~~~~  212 (270)
T 1rwi_B          139 KTQ--TVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQ----VVLPFTDITAPWGIAVDEAGTVYVTEHNT  212 (270)
T ss_dssp             CSC--EECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCE----EECCCSSCCSEEEEEECTTCCEEEEETTT
T ss_pred             cee--EeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCce----EeecccCCCCceEEEECCCCCEEEEECCC
Confidence            432  111122234678999999998777766778999998776542    11222222578899999999877777778


Q ss_pred             CeEEEEEeeecccccCCCCCCCCccccccceeEEec-CCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCCC
Q psy11529        169 FKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELN-NSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQV  242 (244)
Q Consensus       169 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~  242 (244)
                      +.|.+||..                  . ....... .+   ...+.+++++++|+++++...++.|+++++...
T Consensus       213 ~~v~~~~~~------------------~-~~~~~~~~~~---~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~  265 (270)
T 1rwi_B          213 NQVVKLLAG------------------S-TTSTVLPFTG---LNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEH  265 (270)
T ss_dssp             SCEEEECTT------------------C-SCCEECCCCS---CSCEEEEEECTTCCEEEEEGGGTEEEEECCCGG
T ss_pred             CcEEEEcCC------------------C-CcceeeccCC---CCCceeEEECCCCCEEEEECCCCEEEEEcCCCc
Confidence            899999962                  1 2222222 22   356899999999998888888999999998753

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.75  E-value=9.4e-16  Score=112.09  Aligned_cols=188  Identities=12%  Similarity=0.025  Sum_probs=140.1

Q ss_pred             CCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCC-CceEEEEeCCCCCeEEEEeCCccEEEEeeeCCCCCceeeEEEe
Q psy11529         20 TRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHD-LKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLL   98 (244)
Q Consensus        20 ~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~   98 (244)
                      .++.|++++.++.|++||.++  +  +.+..+..+. ..+.++.++|+|++++  +.++.|..||  . +++.+..+.. 
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~t--G--~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d--~-~G~~~W~~~~-   73 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDT--K--EIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMIT--R-DGRELWNIAA-   73 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTT--T--EEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEEC--T-TSCEEEEEEC-
T ss_pred             CCcEEEeeCCCCEEEEEECCC--C--eEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEEC--C-CCCEEEEEcC-
Confidence            467899999999999999965  4  7777777665 4788999999999888  3477899999  6 6775554442 


Q ss_pred             ccCcceEEEEECCCCCeEEEeeC-CCeEEEEEeecCCCceEEEeeec--CCCCceeEEEecCCCCEEEEeeCCCeEEEEE
Q psy11529         99 RINRAATCVKWSPLENKFAAGSG-ARLISVCYFESENDWWVAKHIKK--PIKSTITCLDWHPNNHLLGCGSTDFKVRVFS  175 (244)
Q Consensus        99 ~~~~~v~~~~~~~~~~~l~~~~~-d~~i~i~d~~~~~~~~~~~~~~~--~~~~~v~~~~~~p~~~~l~~~~~dg~i~i~d  175 (244)
                      .....+.++.+.|+|+.+++.+. ++.+..+|. .++..+.......  .+......+++.++|+++++...++.|..||
T Consensus        74 ~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d  152 (276)
T 3no2_A           74 PAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIA  152 (276)
T ss_dssp             CTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEEC
T ss_pred             CCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEEC
Confidence            22356889999999999999877 666766654 3333222211111  1113455677899999999999999999999


Q ss_pred             eeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCC
Q psy11529        176 AYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQ  241 (244)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~  241 (244)
                      .                  . ++.+.++..+    ....++.+.++|+++++++.++.|..+|.++
T Consensus       153 ~------------------~-G~~~w~~~~~----~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~t  195 (276)
T 3no2_A          153 P------------------N-GQLLNSVKLS----GTPFSSAFLDNGDCLVACGDAHCFVQLNLES  195 (276)
T ss_dssp             T------------------T-SCEEEEEECS----SCCCEEEECTTSCEEEECBTTSEEEEECTTT
T ss_pred             C------------------C-CCEEEEEECC----CCccceeEcCCCCEEEEeCCCCeEEEEeCcC
Confidence            7                  4 8888888763    3456778889999999988888899998774

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.75  E-value=5.8e-18  Score=129.98  Aligned_cols=197  Identities=10%  Similarity=0.061  Sum_probs=128.7

Q ss_pred             eEEEEEcCCCCeEEEecCC---CeEEEeeeccCCCcceeeeeeccCCCc-eEEEEeCCCCCeEEEEeCCccEEEEeeeCC
Q psy11529         12 VTTHAWNNTRQQLAFTPNN---QEVHLYQYEKAANDWSQLDVLDGHDLK-VTGIDWAPNTNRIVTCSADRNAYVWTQNND   87 (244)
Q Consensus        12 v~~~~~~~~~~~l~~~~~d---~~v~v~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~   87 (244)
                      +.+++|+|||++|++....   ..|++|++.+  +  +. ..+..+... ...+.|+|+|++|+.++.++.|++||  ..
T Consensus        38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~--~--~~-~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d--~~  110 (396)
T 3c5m_A           38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLET--Q--QA-VQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVD--LE  110 (396)
T ss_dssp             TTSCCBCTTSCEEEEEECTTSSCEEEEEETTT--T--EE-EECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEE--TT
T ss_pred             eecCcCCCCCCEEEEEEecCCCceEEEEECCC--C--cE-EEeecCCCCccccceECCCCCEEEEEEcCCcEEEEE--CC
Confidence            6678999999998877542   4788888876  4  32 333333333 33478999999999999888999999  77


Q ss_pred             CCCceeeEEEeccCcceEE-------------------EEECCCCCeEEEe-----eCCCeEEEEEeecCCCceEEEeee
Q psy11529         88 DKKWKPTLVLLRINRAATC-------------------VKWSPLENKFAAG-----SGARLISVCYFESENDWWVAKHIK  143 (244)
Q Consensus        88 ~~~~~~~~~~~~~~~~v~~-------------------~~~~~~~~~l~~~-----~~d~~i~i~d~~~~~~~~~~~~~~  143 (244)
                      +++......  .+......                   +.|+|+++.++..     ..+..|.+||+.+++.    ... 
T Consensus       111 ~~~~~~~~~--~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~----~~~-  183 (396)
T 3c5m_A          111 TLEEQVIYT--VDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGEL----EVI-  183 (396)
T ss_dssp             TCCEEEEEE--CCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCE----EEE-
T ss_pred             CCCcEEEEe--cccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcE----Eee-
Confidence            776433322  12222222                   3568888877665     3567888998877653    111 


Q ss_pred             cCCCCceeEEEecC-CCCEEEEeeCC------CeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEE
Q psy11529        144 KPIKSTITCLDWHP-NNHLLGCGSTD------FKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSV  216 (244)
Q Consensus       144 ~~~~~~v~~~~~~p-~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  216 (244)
                      ..+...+..+.|+| +++.|+..+.+      ..|.+||+.                  .++ ...+..+. ....+..+
T Consensus       184 ~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~------------------~~~-~~~l~~~~-~~~~~~~~  243 (396)
T 3c5m_A          184 HQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNED------------------GSN-VRKIKEHA-EGESCTHE  243 (396)
T ss_dssp             EEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETT------------------SCC-CEESSCCC-TTEEEEEE
T ss_pred             ccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECC------------------CCc-eeEeeccC-CCccccce
Confidence            13456788999999 78877766543      357777762                  222 22222220 02357889


Q ss_pred             EEecCCCEEEEeeCC-----CcEEEEeCCCC
Q psy11529        217 AFSKDGNKLCWTSHD-----GSINVRMSQQV  242 (244)
Q Consensus       217 ~~s~~~~~l~~~~~d-----g~i~vwd~~~~  242 (244)
                      +|+|||++|+..+.+     +.|++||+.+.
T Consensus       244 ~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g  274 (396)
T 3c5m_A          244 FWIPDGSAMAYVSYFKGQTDRVIYKANPETL  274 (396)
T ss_dssp             EECTTSSCEEEEEEETTTCCEEEEEECTTTC
T ss_pred             EECCCCCEEEEEecCCCCccceEEEEECCCC
Confidence            999999987776544     44999998653

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.73  E-value=7.5e-16  Score=116.67  Aligned_cols=176  Identities=9%  Similarity=0.020  Sum_probs=130.0

Q ss_pred             CCceEEEEEcCCCCeEEEecCCCeEEEeeeccCC-------CcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEE
Q psy11529          9 INPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAA-------NDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYV   81 (244)
Q Consensus         9 ~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~-------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i   81 (244)
                      ..+++.+++++...++++|+.+ .+.+|++....       ++.+..... .+.. |..++|  ++++|+++ .++.|++
T Consensus        37 ~~~~nlLais~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f--d~~~L~v~-~~~~l~v  110 (388)
T 1xip_A           37 FASLQNLDISNSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF--HGDQVLVS-TRNALYS  110 (388)
T ss_dssp             SSCCBCEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE--ETTEEEEE-ESSEEEE
T ss_pred             cccccEEEEcCCCCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE--CCCEEEEE-cCCcEEE
Confidence            3468999999999999999886 56779875411       112222233 3566 999999  89999998 8899999


Q ss_pred             EeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCE
Q psy11529         82 WTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHL  161 (244)
Q Consensus        82 wd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~  161 (244)
                      ||  +.+...  ......+...+.++.+.+.  .+++++.||.+.+||+.....    ..    +...|++++|+|+|  
T Consensus       111 ~d--v~sl~~--~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~----~~----~~~~Vs~v~WSpkG--  174 (388)
T 1xip_A          111 LD--LEELSE--FRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKST----KQ----LAQNVTSFDVTNSQ--  174 (388)
T ss_dssp             EE--SSSTTC--EEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCE----EE----EEESEEEEEECSSE--
T ss_pred             EE--chhhhc--cCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcc----cc----ccCCceEEEEcCCc--
Confidence            99  555442  2233456677888887654  388899999999999997764    11    34589999999999  


Q ss_pred             EEEeeCCCeEEEEEeeecccccCCCCCCCCccccccce--eEEe------c---CCCCCCCCeEEEEEecCCCEEEE
Q psy11529        162 LGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNC--LVEL------N---NSSSGGGWIHSVAFSKDGNKLCW  227 (244)
Q Consensus       162 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~------~---~~~~~~~~v~~~~~s~~~~~l~~  227 (244)
                      ++.|..||++++|+..                  ..+.  ..++      .   +|   ...|.++.|.+++.++++
T Consensus       175 ~~vg~~dg~i~~~~~~------------------~~~~~~k~~I~~Pp~~~~~~~~---~~~V~sI~wl~~~~flv~  230 (388)
T 1xip_A          175 LAVLLKDRSFQSFAWR------------------NGEMEKQFEFSLPSELEELPVE---EYSPLSVTILSPQDFLAV  230 (388)
T ss_dssp             EEEEETTSCEEEEEEE------------------TTEEEEEEEECCCHHHHTSCTT---TSEEEEEEESSSSEEEEE
T ss_pred             eEEEEcCCcEEEEcCC------------------CccccccceecCCcccccccCC---CeeEEEEEEecCCeEEEE
Confidence            6788999999999873                  2232  3334      2   24   788999999999998876

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.73  E-value=6.4e-14  Score=105.17  Aligned_cols=195  Identities=11%  Similarity=-0.012  Sum_probs=128.9

Q ss_pred             CCCceEEEEEcCCCCeEEEecCC----CeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeC------Cc
Q psy11529          8 GINPVTTHAWNNTRQQLAFTPNN----QEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSA------DR   77 (244)
Q Consensus         8 ~~~~v~~~~~~~~~~~l~~~~~d----~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------d~   77 (244)
                      +...+.+++++|+|+++++...+    +.|.+|+.++  +.......-..+...+.+++++|+|+.+++...      .+
T Consensus        85 ~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~--~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~  162 (333)
T 2dg1_A           85 HKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENG--DNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLG  162 (333)
T ss_dssp             SSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTS--CSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCE
T ss_pred             CCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCC--CEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCc
Confidence            35679999999999988877655    6899999877  422211111124567899999999987776653      24


Q ss_pred             cEEEEeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEe-eCCCeEEEEEeecC-CCceEEE-eee--cCCCCceeE
Q psy11529         78 NAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAG-SGARLISVCYFESE-NDWWVAK-HIK--KPIKSTITC  152 (244)
Q Consensus        78 ~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~i~d~~~~-~~~~~~~-~~~--~~~~~~v~~  152 (244)
                      .|..+|  ..+++....   ......+..++|+|+++.|+++ ..++.|.+|+++.. ....... ...  ......+..
T Consensus       163 ~l~~~~--~~~~~~~~~---~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~  237 (333)
T 2dg1_A          163 GVYYVS--PDFRTVTPI---IQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDS  237 (333)
T ss_dssp             EEEEEC--TTSCCEEEE---EEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEE
T ss_pred             eEEEEe--CCCCEEEEe---ecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCc
Confidence            555555  555443222   2233457899999999866554 45789999999753 2211110 111  111146788


Q ss_pred             EEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCC------CeEEEEEecCCCEEE
Q psy11529        153 LDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGG------WIHSVAFSKDGNKLC  226 (244)
Q Consensus       153 ~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~v~~~~~s~~~~~l~  226 (244)
                      ++++++|+++++...++.|.+||.                   .++.+..+..+   ..      .+.+++|+||++.|+
T Consensus       238 i~~d~~G~l~v~~~~~~~v~~~d~-------------------~g~~~~~~~~~---~~~~g~~~~~~~~~~~~dg~~L~  295 (333)
T 2dg1_A          238 CCIDSDDNLYVAMYGQGRVLVFNK-------------------RGYPIGQILIP---GRDEGHMLRSTHPQFIPGTNQLI  295 (333)
T ss_dssp             EEEBTTCCEEEEEETTTEEEEECT-------------------TSCEEEEEECT---TGGGTCSCBCCEEEECTTSCEEE
T ss_pred             eEECCCCCEEEEEcCCCEEEEECC-------------------CCCEEEEEEcC---CCccccccCcceEEECCCCCEEE
Confidence            999999998888777899999986                   24455555443   22      688999999987776


Q ss_pred             EeeCC
Q psy11529        227 WTSHD  231 (244)
Q Consensus       227 ~~~~d  231 (244)
                      .++.+
T Consensus       296 v~~~~  300 (333)
T 2dg1_A          296 ICSND  300 (333)
T ss_dssp             EEEEC
T ss_pred             EEeCc
Confidence            55554

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.73  E-value=5.3e-16  Score=127.60  Aligned_cols=199  Identities=14%  Similarity=0.069  Sum_probs=125.3

Q ss_pred             ceEEEEEcCCCCeEEE-----ecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCcc-------
Q psy11529         11 PVTTHAWNNTRQQLAF-----TPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRN-------   78 (244)
Q Consensus        11 ~v~~~~~~~~~~~l~~-----~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~-------   78 (244)
                      .+.+++|||||++||.     |+.+..|++||+.+  ++......+...  ....++|+|||+.|+.++.|..       
T Consensus       122 ~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~t--g~~~~~~~~~~~--~~~~~~wspDg~~l~~~~~d~~~~~~~~~  197 (695)
T 2bkl_A          122 SLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDS--GEWSKVDVIEGG--KYATPKWTPDSKGFYYEWLPTDPSIKVDE  197 (695)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTT--CCBCSSCCBSCC--TTCCCEECTTSSEEEEEECCCCTTSCGGG
T ss_pred             EEEEEEECCCCCEEEEEECCCCCceEEEEEEECCC--CCCcCCcccCcc--cccceEEecCCCEEEEEEecCCCCCcccc
Confidence            6889999999999994     44457899999987  422101122211  1267999999999999887765       


Q ss_pred             ------EEEEeeeCCCCCceeeEEE--eccCcceEEEEECCCCCeEEEeeCCC--eEEEEEeecCCCceEEEeeecCCCC
Q psy11529         79 ------AYVWTQNNDDKKWKPTLVL--LRINRAATCVKWSPLENKFAAGSGAR--LISVCYFESENDWWVAKHIKKPIKS  148 (244)
Q Consensus        79 ------i~iwd~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d~--~i~i~d~~~~~~~~~~~~~~~~~~~  148 (244)
                            |++|+  +.++........  ..+...+..+.|+|+|++|++++.++  ...+|-++.....  .... ..+..
T Consensus       198 ~~~~~~v~~~~--l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~--~~~l-~~~~~  272 (695)
T 2bkl_A          198 RPGYTTIRYHT--LGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKD--FRLL-VKGVG  272 (695)
T ss_dssp             GGGGCEEEEEE--TTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSS--CEEE-EECSS
T ss_pred             CCCCCEEEEEE--CCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCc--eEEe-ecCCC
Confidence                  99999  666653222222  23445788999999999988877655  4444444332210  1222 22233


Q ss_pred             ceeEEEecCCCCEEEEeeC----CCeEEEEEeeecccccCCCCCCCCccccccce--eEEecCCCCCCCCeEEEEEecCC
Q psy11529        149 TITCLDWHPNNHLLGCGST----DFKVRVFSAYIKDIESAPQSTNWGSKSTLGNC--LVELNNSSSGGGWIHSVAFSKDG  222 (244)
Q Consensus       149 ~v~~~~~~p~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~v~~~~~s~~~  222 (244)
                      .+....+ ++|+ ++..+.    ++.|.+||+.                  .++.  ...+..++. ...+..++|+ ++
T Consensus       273 ~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~------------------~~~~~~~~~l~~~~~-~~~l~~~~~~-~~  330 (695)
T 2bkl_A          273 AKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPA------------------KPARASWKEIVPEDS-SASLLSVSIV-GG  330 (695)
T ss_dssp             CCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTT------------------BCSGGGCEEEECCCS-SCEEEEEEEE-TT
T ss_pred             ceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCC------------------CCCccCCeEEecCCC-CCeEEEEEEE-CC
Confidence            4455556 5666 444443    5789999973                  2221  122222210 3457888888 77


Q ss_pred             CEEEEeeCCCcEEEEeCC
Q psy11529        223 NKLCWTSHDGSINVRMSQ  240 (244)
Q Consensus       223 ~~l~~~~~dg~i~vwd~~  240 (244)
                      .++++...|+..+||.++
T Consensus       331 ~lv~~~~~dg~~~l~~~~  348 (695)
T 2bkl_A          331 HLSLEYLKDATSEVRVAT  348 (695)
T ss_dssp             EEEEEEEETTEEEEEEEE
T ss_pred             EEEEEEEECCEEEEEEEe
Confidence            788888899988887543

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.72  E-value=7e-15  Score=107.07  Aligned_cols=197  Identities=9%  Similarity=-0.051  Sum_probs=133.9

Q ss_pred             ceEEEEEcCCCCeEE-EecCCCeEEEeeeccCCCcceeeeee-ccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCCC
Q psy11529         11 PVTTHAWNNTRQQLA-FTPNNQEVHLYQYEKAANDWSQLDVL-DGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDD   88 (244)
Q Consensus        11 ~v~~~~~~~~~~~l~-~~~~d~~v~v~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~   88 (244)
                      ...+++++++|++++ +...++.|.+|+..+  .   ....+ ..+...+.+++++++++.+++.. ++.|.+||  ...
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~--~---~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d--~~~   96 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGS--T---GTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLA--AGS   96 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC----------EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEEC--TTC
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCC--c---ccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEe--CCC
Confidence            678999999999777 546788999999765  2   22222 22335678899999998666655 88999999  555


Q ss_pred             CCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEeeCC
Q psy11529         89 KKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTD  168 (244)
Q Consensus        89 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d  168 (244)
                      .... .. .......+..++++|+++.+++...++.|.+|+......    ..........+..++++|+|+++++...+
T Consensus        97 ~~~~-~~-~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~----~~~~~~~~~~p~~i~~~~~g~l~v~~~~~  170 (270)
T 1rwi_B           97 NNQT-VL-PFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQ----TVLPFTGLNDPDGVAVDNSGNVYVTDTDN  170 (270)
T ss_dssp             SCCE-EC-CCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSC----EECCCCSCCSCCCEEECTTCCEEEEEGGG
T ss_pred             ceEe-ee-ecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCcee----EeeccccCCCceeEEEeCCCCEEEEECCC
Confidence            4321 11 112235688999999998777767788899886444332    11112223467889999999977777778


Q ss_pred             CeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCCC
Q psy11529        169 FKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQV  242 (244)
Q Consensus       169 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~  242 (244)
                      +.|.+||..                  ..........+   ...+..++++++|.++++...++.|.+|+....
T Consensus       171 ~~i~~~~~~------------------~~~~~~~~~~~---~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~  223 (270)
T 1rwi_B          171 NRVVKLEAE------------------SNNQVVLPFTD---ITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGST  223 (270)
T ss_dssp             TEEEEECTT------------------TCCEEECCCSS---CCSEEEEEECTTCCEEEEETTTSCEEEECTTCS
T ss_pred             CEEEEEecC------------------CCceEeecccC---CCCceEEEECCCCCEEEEECCCCcEEEEcCCCC
Confidence            899999972                  22222222222   356889999999987777777889999998653

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.71  E-value=5.2e-15  Score=122.00  Aligned_cols=202  Identities=10%  Similarity=0.049  Sum_probs=136.1

Q ss_pred             eEEEEEcCCCCeEEEecCCCe----------------EEEeeeccCCCcce--eeeeeccCCCceEEEEeCCCCCeEEEE
Q psy11529         12 VTTHAWNNTRQQLAFTPNNQE----------------VHLYQYEKAANDWS--QLDVLDGHDLKVTGIDWAPNTNRIVTC   73 (244)
Q Consensus        12 v~~~~~~~~~~~l~~~~~d~~----------------v~v~~~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~   73 (244)
                      +..++|+|||+.|++++.++.                |++|++.+  +...  .+.....|...+..+.|+|||++|+.+
T Consensus       173 ~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t--~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~  250 (710)
T 2xdw_A          173 FSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGT--DQSEDILCAEFPDEPKWMGGAELSDDGRYVLLS  250 (710)
T ss_dssp             SCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTS--CGGGCEEEECCTTCTTCEEEEEECTTSCEEEEE
T ss_pred             cceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCC--CcccceEEeccCCCCeEEEEEEEcCCCCEEEEE
Confidence            567999999999999877655                99999976  3212  222233355668899999999998877


Q ss_pred             eC-----CccEEEEeeeCCC------CCceeeEEEeccCcceEEEEECCCCCeEEEeeCC----CeEEEEEeecCCCceE
Q psy11529         74 SA-----DRNAYVWTQNNDD------KKWKPTLVLLRINRAATCVKWSPLENKFAAGSGA----RLISVCYFESENDWWV  138 (244)
Q Consensus        74 ~~-----d~~i~iwd~~~~~------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----~~i~i~d~~~~~~~~~  138 (244)
                      +.     +..|.+||  +.+      +... ...+..+...+.. .|+|+|+.|+..+..    ..|.+||+.+.... .
T Consensus       251 ~~~~~~~~~~l~~~d--~~~~~~~~~~~~~-~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~-~  325 (710)
T 2xdw_A          251 IREGCDPVNRLWYCD--LQQESNGITGILK-WVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEES-K  325 (710)
T ss_dssp             EECSSSSCCEEEEEE--GGGSSSSSCSSCC-CEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGG-G
T ss_pred             EEccCCCccEEEEEE--CcccccccCCccc-eEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcc-c
Confidence            64     56899999  554      3211 2223344444444 588898888776653    35888888765310 0


Q ss_pred             EEeeecCCC-CceeEEEecCCCCEEEEeeCCCeEE--EEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEE
Q psy11529        139 AKHIKKPIK-STITCLDWHPNNHLLGCGSTDFKVR--VFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHS  215 (244)
Q Consensus       139 ~~~~~~~~~-~~v~~~~~~p~~~~l~~~~~dg~i~--i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  215 (244)
                      ......... ..+..++|++++.++++...++..+  +||+                  ..++.+..+..+   ...+..
T Consensus       326 ~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~------------------~~g~~~~~l~~~---~~~v~~  384 (710)
T 2xdw_A          326 WKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDL------------------ATGALLKIFPLE---VGSVVG  384 (710)
T ss_dssp             CEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEET------------------TTCCEEEEECCC---SSEEEE
T ss_pred             ceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEEC------------------CCCCEEEecCCC---CceEEE
Confidence            112222222 3688899998888888888888554  4554                  346666677766   778899


Q ss_pred             EEEecCCCEEEEe-e---CCCcEEEEeCCC
Q psy11529        216 VAFSKDGNKLCWT-S---HDGSINVRMSQQ  241 (244)
Q Consensus       216 ~~~s~~~~~l~~~-~---~dg~i~vwd~~~  241 (244)
                      +.++|++..++.. +   ..++|++||+.+
T Consensus       385 ~~~s~d~~~l~~~~ss~~~P~~i~~~d~~t  414 (710)
T 2xdw_A          385 YSGQKKDTEIFYQFTSFLSPGIIYHCDLTK  414 (710)
T ss_dssp             EECCTTCSEEEEEEECSSCCCEEEEEETTS
T ss_pred             EecCCCCCEEEEEEeCCCCCCEEEEEECCC
Confidence            9999998765533 2   357899999865

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.70  E-value=1.3e-14  Score=109.44  Aligned_cols=180  Identities=8%  Similarity=0.107  Sum_probs=121.5

Q ss_pred             eEEEEEcCCCCeEEEecC---------------------------CCeEEEeeeccCCCcceeeeeeccCCCceEEEEeC
Q psy11529         12 VTTHAWNNTRQQLAFTPN---------------------------NQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWA   64 (244)
Q Consensus        12 v~~~~~~~~~~~l~~~~~---------------------------d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~   64 (244)
                      +..++|+|||+.|++++.                           ...|++|++.+  +  +.+..+.. . .+..++|+
T Consensus       106 ~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~--~--~~~~~l~~-~-~~~~~~~s  179 (347)
T 2gop_A          106 IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTES--E--EVIEEFEK-P-RFSSGIWH  179 (347)
T ss_dssp             EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTT--T--EEEEEEEE-E-TTCEEEEE
T ss_pred             ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCC--C--eEEeeecC-C-CcccccCC
Confidence            889999999999888763                           25788899876  4  33234443 3 78899999


Q ss_pred             CCCCeEEEEeCCc-------cEEEEeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCC--------eEEEEE
Q psy11529         65 PNTNRIVTCSADR-------NAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGAR--------LISVCY  129 (244)
Q Consensus        65 ~~~~~l~~~~~d~-------~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~--------~i~i~d  129 (244)
                      |+| +++++..+.       ...||.++  +++...   +..+ ..+..+  +|+|+.|+.++.+.        .|.+||
T Consensus       180 pdg-~~~~~~~~~~~~~~~~~~~l~~~d--~~~~~~---l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d  250 (347)
T 2gop_A          180 RDK-IVVNVPHREIIPQYFKFWDIYIWE--DGKEEK---MFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD  250 (347)
T ss_dssp             TTE-EEEEEECCCSSCCSSCCEEEEEEE--TTEEEE---EEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC
T ss_pred             CCe-EEEEEecccccccccccccEEEeC--CCceEE---eccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC
Confidence            999 777775542       56788743  444222   2223 444444  99999988877543        566666


Q ss_pred             eecCCCceEEEeeecCCCCceeE-EEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCC
Q psy11529        130 FESENDWWVAKHIKKPIKSTITC-LDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSS  208 (244)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~v~~-~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (244)
                        +++    .......+...+.. +.|+ ++ ++++++.++.++|| +.                  .++... +..+  
T Consensus       251 --~~~----~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~------------------~g~~~~-~~~~--  300 (347)
T 2gop_A          251 --GKE----VMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IW------------------DGEIKP-IAKG--  300 (347)
T ss_dssp             --SSC----EEESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EE------------------SSSEEE-EECS--
T ss_pred             --CCc----eEeccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-Ec------------------CCceEE-EecC--
Confidence              332    23344445567876 9999 88 88999999999999 83                  233322 3333  


Q ss_pred             CCCCeEEEEEecCCCEEEEeeCCCcE-EEEeC
Q psy11529        209 GGGWIHSVAFSKDGNKLCWTSHDGSI-NVRMS  239 (244)
Q Consensus       209 ~~~~v~~~~~s~~~~~l~~~~~dg~i-~vwd~  239 (244)
                       ...+.+++|+|  .++++++.++.. .+|.+
T Consensus       301 -~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~  329 (347)
T 2gop_A          301 -RHWIMGFDVDE--IVVYLKETATRLRELFTW  329 (347)
T ss_dssp             -SSEEEEEEESS--SEEEEEECSSSCCEEEEE
T ss_pred             -CCeEEeeeeeC--cEEEEEcCCCChHHheEe
Confidence             67799999999  677777776654 66654

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.67  E-value=2e-14  Score=119.12  Aligned_cols=196  Identities=12%  Similarity=0.040  Sum_probs=126.0

Q ss_pred             ceEEEEEcCCCCeEEEecCC-----CeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCcc-------
Q psy11529         11 PVTTHAWNNTRQQLAFTPNN-----QEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRN-------   78 (244)
Q Consensus        11 ~v~~~~~~~~~~~l~~~~~d-----~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~-------   78 (244)
                      .+..++|||||++||+++.+     ..|++||+.+  ++  .+. ...+...+..++|+|| +.|+.++.++.       
T Consensus       164 ~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~t--g~--~~~-~~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~  237 (741)
T 1yr2_A          164 ALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVAD--GK--PLA-DELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQ  237 (741)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTT--CC--EEE-EEEEEEESCCCEESTT-SEEEEEECCCC-------
T ss_pred             EEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCC--CC--CCC-ccCCCceeccEEEECC-CEEEEEEecCcccccccc
Confidence            67889999999999887543     4699999987  42  221 1112222357899999 98888876543       


Q ss_pred             -------EEEEeeeCCCCCceeeEEEec--cCcceEEEEECCCCCeEEEeeCCC-----eEEEEEeecCCCceEEEeeec
Q psy11529         79 -------AYVWTQNNDDKKWKPTLVLLR--INRAATCVKWSPLENKFAAGSGAR-----LISVCYFESENDWWVAKHIKK  144 (244)
Q Consensus        79 -------i~iwd~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d~-----~i~i~d~~~~~~~~~~~~~~~  144 (244)
                             |++|+  +.++..........  +...+..+.|+|||++|+..+.++     .|.+||+.++... .......
T Consensus       238 ~~~~~~~v~~~~--lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~-~~~~l~~  314 (741)
T 1yr2_A          238 ALNYNQTVWLHR--LGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIG-PVTALIP  314 (741)
T ss_dssp             -CCCCCEEEEEE--TTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEEC-CCEEEEC
T ss_pred             cCCCCCEEEEEE--CCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCc-ccEEecC
Confidence                   88888  66654322222222  223578999999999988877543     8999999876210 0122222


Q ss_pred             CCCCceeEEEecCCCCEEEEeeCC----CeEEEEEeeecccccCCCCCCCCcccccc--ceeEEecCCCCCCCCeEEEEE
Q psy11529        145 PIKSTITCLDWHPNNHLLGCGSTD----FKVRVFSAYIKDIESAPQSTNWGSKSTLG--NCLVELNNSSSGGGWIHSVAF  218 (244)
Q Consensus       145 ~~~~~v~~~~~~p~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~v~~~~~  218 (244)
                       +....... ++|+|+.|+..+.+    +.|.+||+                  ..+  +....+..+   ...+..++|
T Consensus       315 -~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~------------------~~~~~~~~~l~~~~---~~~l~~~~~  371 (741)
T 1yr2_A          315 -DLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDL------------------SGSTPRFDTVVPES---KDNLESVGI  371 (741)
T ss_dssp             -SSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEEC------------------SSSSCEEEEEECCC---SSEEEEEEE
T ss_pred             -CCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeC------------------CCCccccEEEecCC---CCeEEEEEE
Confidence             22333333 34889888877653    45999997                  232  222333333   455777888


Q ss_pred             ecCCCEEEEeeCCCcEEEEeC
Q psy11529        219 SKDGNKLCWTSHDGSINVRMS  239 (244)
Q Consensus       219 s~~~~~l~~~~~dg~i~vwd~  239 (244)
                      + ++.++++...|+..+||.+
T Consensus       372 ~-~~~lv~~~~~dg~~~l~~~  391 (741)
T 1yr2_A          372 A-GNRLFASYIHDAKSQVLAF  391 (741)
T ss_dssp             E-BTEEEEEEEETTEEEEEEE
T ss_pred             E-CCEEEEEEEECCEEEEEEE
Confidence            7 6667888888988777754

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.67  E-value=8.2e-15  Score=120.56  Aligned_cols=201  Identities=10%  Similarity=0.012  Sum_probs=132.6

Q ss_pred             EEEEEcCCCCeEEEecCCCe-------------EEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCc--
Q psy11529         13 TTHAWNNTRQQLAFTPNNQE-------------VHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADR--   77 (244)
Q Consensus        13 ~~~~~~~~~~~l~~~~~d~~-------------v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~--   77 (244)
                      ..++|+|||+.|++++.+..             |++|++.++...-.++.....+...+.++.|+|||++|+.++.++  
T Consensus       171 ~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~  250 (695)
T 2bkl_A          171 ATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWS  250 (695)
T ss_dssp             CCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTT
T ss_pred             cceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCC
Confidence            67899999999999887765             999999762110123334444566789999999999998877665  


Q ss_pred             --cEEEEeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeC----CCeEEEEEeecCCCceEEEeeecCC-CCce
Q psy11529         78 --NAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSG----ARLISVCYFESENDWWVAKHIKKPI-KSTI  150 (244)
Q Consensus        78 --~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----d~~i~i~d~~~~~~~~~~~~~~~~~-~~~v  150 (244)
                        .|.+|+  ..++...   .+..+...+....+ +++. ++..+.    ++.|.+||+++..... .......+ ...+
T Consensus       251 ~~~l~~~~--~~~~~~~---~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~-~~~l~~~~~~~~l  322 (695)
T 2bkl_A          251 ENDVYWKR--PGEKDFR---LLVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARAS-WKEIVPEDSSASL  322 (695)
T ss_dssp             EEEEEEEC--TTCSSCE---EEEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGG-CEEEECCCSSCEE
T ss_pred             ceEEEEEc--CCCCceE---EeecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccC-CeEEecCCCCCeE
Confidence              666666  5555432   22334455566666 5666 554443    5789999887654200 11222222 4567


Q ss_pred             eEEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEe--
Q psy11529        151 TCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWT--  228 (244)
Q Consensus       151 ~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~--  228 (244)
                      ..++|+ ++.++++...|+..+||.+.                 ..++....+..+.  ...+..++++|+++.++..  
T Consensus       323 ~~~~~~-~~~lv~~~~~dg~~~l~~~~-----------------~~g~~~~~l~~~~--~~~v~~~~~s~d~~~l~~~~s  382 (695)
T 2bkl_A          323 LSVSIV-GGHLSLEYLKDATSEVRVAT-----------------LKGKPVRTVQLPG--VGAASNLMGLEDLDDAYYVFT  382 (695)
T ss_dssp             EEEEEE-TTEEEEEEEETTEEEEEEEE-----------------TTCCEEEECCCSS--SSEECCCBSCTTCSEEEEEEE
T ss_pred             EEEEEE-CCEEEEEEEECCEEEEEEEe-----------------CCCCeeEEecCCC--CeEEEEeecCCCCCEEEEEEc
Confidence            888888 67788888999998888763                 1244444454331  4567788899999866632  


Q ss_pred             --eCCCcEEEEeCCC
Q psy11529        229 --SHDGSINVRMSQQ  241 (244)
Q Consensus       229 --~~dg~i~vwd~~~  241 (244)
                        ...++|++||+.+
T Consensus       383 s~~~P~~v~~~d~~~  397 (695)
T 2bkl_A          383 SFTTPRQIYKTSVST  397 (695)
T ss_dssp             ETTEEEEEEEEETTT
T ss_pred             CCCCCCEEEEEECCC
Confidence              2357899999865

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.67  E-value=1.2e-13  Score=110.25  Aligned_cols=211  Identities=9%  Similarity=0.003  Sum_probs=140.1

Q ss_pred             CceEEEEEcCCCCeEEEecCCCeEEEeeec--cCCCcceeeeeeccCCCceEEEEeC----CCCCeEEEEeC-CccEEEE
Q psy11529         10 NPVTTHAWNNTRQQLAFTPNNQEVHLYQYE--KAANDWSQLDVLDGHDLKVTGIDWA----PNTNRIVTCSA-DRNAYVW   82 (244)
Q Consensus        10 ~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~l~~~~~-d~~i~iw   82 (244)
                      ..+..+.|+|||+++++++.++.|.+||+.  +  .  +.+..+.. ......++|+    |+|+++++++. ++.+.++
T Consensus       197 ~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t--~--~~v~~i~~-G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~Vi  271 (567)
T 1qks_A          197 YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKE--P--TTVAEIKI-GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIM  271 (567)
T ss_dssp             SCEEEEEECTTSCEEEEEETTSEEEEEETTSSS--C--CEEEEEEC-CSEEEEEEECCSTTCTTTEEEEEEEETTEEEEE
T ss_pred             CCccceEECCCCCEEEEEcCCCeEEEEECCCCC--C--cEeEEEec-CCCCceeEEccccCCCCCEEEEEEccCCeEEEE
Confidence            456789999999999999999999999995  3  2  55666664 3345789999    69999887765 5899999


Q ss_pred             eeeCCCCCceeeEEEec-----------------------------------------------------cCcceEEEEE
Q psy11529         83 TQNNDDKKWKPTLVLLR-----------------------------------------------------INRAATCVKW  109 (244)
Q Consensus        83 d~~~~~~~~~~~~~~~~-----------------------------------------------------~~~~v~~~~~  109 (244)
                      |  ..+.+........+                                                     .......+.|
T Consensus       272 D--~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~  349 (567)
T 1qks_A          272 D--GETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGL  349 (567)
T ss_dssp             E--TTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEE
T ss_pred             E--CCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceE
Confidence            9  66655433322110                                                     0112335689


Q ss_pred             CCCCCeEEEee-CCCeEEEEEeecCCCceEEEe-eecCCCCceeEEEecCCCC-EEEEee-CCCeEEEEEeeecccccCC
Q psy11529        110 SPLENKFAAGS-GARLISVCYFESENDWWVAKH-IKKPIKSTITCLDWHPNNH-LLGCGS-TDFKVRVFSAYIKDIESAP  185 (244)
Q Consensus       110 ~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~-~~~~~~~~v~~~~~~p~~~-~l~~~~-~dg~i~i~d~~~~~~~~~~  185 (244)
                      +|++++++++. .++.|.++|..+++....... -..+|.+.-..+ ++|++. ..+++. .++.|.++|.....-.   
T Consensus       350 ~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~---  425 (567)
T 1qks_A          350 DGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHP---  425 (567)
T ss_dssp             CTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCT---
T ss_pred             CCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCc---
Confidence            99999987765 578999999988764222222 123443322222 588754 445554 4689999998421100   


Q ss_pred             CCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeC-------CCcEEEEeCCCC
Q psy11529        186 QSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSH-------DGSINVRMSQQV  242 (244)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-------dg~i~vwd~~~~  242 (244)
                              ....+.+.++...   ...-..+..+|++++|.+...       ..+|.++|+.++
T Consensus       426 --------~~~~kvv~~i~~~---g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~  478 (567)
T 1qks_A          426 --------DNAWKILDSFPAL---GGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAM  478 (567)
T ss_dssp             --------TTBTSEEEEEECS---CSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGC
T ss_pred             --------cccCEEEEEEecC---CCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcc
Confidence                    0125677777664   333345778999998887652       359999999876

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.67  E-value=1.2e-13  Score=100.97  Aligned_cols=186  Identities=7%  Similarity=-0.071  Sum_probs=136.3

Q ss_pred             CceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccC-CCceEEEEeCCCCCeEEEEeC-CccEEEEeeeCC
Q psy11529         10 NPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGH-DLKVTGIDWAPNTNRIVTCSA-DRNAYVWTQNND   87 (244)
Q Consensus        10 ~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~   87 (244)
                      ..+.+++++|+|++|++  .++.|..||.++     +.+..+..+ ...+.++.+.++|+.+++.+. ++.+..+|  . 
T Consensus        37 ~~~~~~~~~pdG~ilvs--~~~~V~~~d~~G-----~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd--~-  106 (276)
T 3no2_A           37 WECNSVAATKAGEILFS--YSKGAKMITRDG-----RELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVN--M-  106 (276)
T ss_dssp             CCCCEEEECTTSCEEEE--CBSEEEEECTTS-----CEEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEEC--T-
T ss_pred             CCCcCeEECCCCCEEEe--CCCCEEEECCCC-----CEEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEe--C-
Confidence            36889999999998883  467899999954     667777654 357889999999999998877 77787777  4 


Q ss_pred             CCCceeeEEEec----cCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEE
Q psy11529         88 DKKWKPTLVLLR----INRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLG  163 (244)
Q Consensus        88 ~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~  163 (244)
                      +++.........    +......+++.++|+++++...++.|..||.+ ++..+....     ...+.++...++|+.++
T Consensus       107 ~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~-----~~~~~~~~~~~~g~~~v  180 (276)
T 3no2_A          107 KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKL-----SGTPFSSAFLDNGDCLV  180 (276)
T ss_dssp             TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEEC-----SSCCCEEEECTTSCEEE
T ss_pred             CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEEEEEC-----CCCccceeEcCCCCEEE
Confidence            666544444321    12345567889999999999999999999987 665333322     13556778889999999


Q ss_pred             EeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCC---CCCCeEEEEEecCCCEEEEee
Q psy11529        164 CGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSS---GGGWIHSVAFSKDGNKLCWTS  229 (244)
Q Consensus       164 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~~~~  229 (244)
                      ++..+++|..+|.                  .+++.+.++.....   ....+..++..++|.++++..
T Consensus       181 ~~~~~~~v~~~d~------------------~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~  231 (276)
T 3no2_A          181 ACGDAHCFVQLNL------------------ESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNW  231 (276)
T ss_dssp             ECBTTSEEEEECT------------------TTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEE
T ss_pred             EeCCCCeEEEEeC------------------cCCcEEEEecCCCCCCccccccccceEcCCCCEEEEec
Confidence            9988889999997                  55777777653200   023377888888998887763

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.66  E-value=7.7e-13  Score=97.53  Aligned_cols=198  Identities=11%  Similarity=-0.035  Sum_probs=139.1

Q ss_pred             CCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCCC
Q psy11529          9 INPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDD   88 (244)
Q Consensus         9 ~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~   88 (244)
                      ...+.+++++++|+++++...++.|..|+..+  .  .....+......+.+++++++++++++...++.|..||  . +
T Consensus        56 ~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g--~--~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d--~-~  128 (299)
T 2z2n_A           56 DAKVMCLTISSDGEVWFTENAANKIGRITKKG--I--IKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRIT--D-D  128 (299)
T ss_dssp             TCCEEEEEECTTSCEEEEETTTTEEEEECTTS--C--EEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEEC--T-T
T ss_pred             cCceeeEEECCCCCEEEeCCCCCeEEEECCCC--c--EEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEEC--C-C
Confidence            45788999999999888777678899998764  2  11222223456789999999998888777788999999  5 5


Q ss_pred             CCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEeeCC
Q psy11529         89 KKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTD  168 (244)
Q Consensus        89 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d  168 (244)
                      ++.. ..........+..+++.++++.+++...++.|..||. +++.   ...........+..++++++|+++++...+
T Consensus       129 g~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~---~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~  203 (299)
T 2z2n_A          129 GKIR-EYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDI---TEFKIPTPASGPVGITKGNDDALWFVEIIG  203 (299)
T ss_dssp             CCEE-EEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCE---EEEECSSTTCCEEEEEECTTSSEEEEETTT
T ss_pred             CCEE-EecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcE---EEeeCCCCCCcceeEEECCCCCEEEEccCC
Confidence            5432 2222233456899999999987777666788999887 4432   111122234568899999999877776668


Q ss_pred             CeEEEEEeeecccccCCCCCCCCcccccccee-EEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCC
Q psy11529        169 FKVRVFSAYIKDIESAPQSTNWGSKSTLGNCL-VELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQ  240 (244)
Q Consensus       169 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~  240 (244)
                      +.|.+||. .                  ++.. .....+   ...+.+++++++|+++++...++.|..||..
T Consensus       204 ~~i~~~~~-~------------------g~~~~~~~~~~---~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~  254 (299)
T 2z2n_A          204 NKIGRITT-S------------------GEITEFKIPTP---NARPHAITAGAGIDLWFTEWGANKIGRLTSN  254 (299)
T ss_dssp             TEEEEECT-T------------------CCEEEEECSST---TCCEEEEEECSTTCEEEEETTTTEEEEEETT
T ss_pred             ceEEEECC-C------------------CcEEEEECCCC---CCCceeEEECCCCCEEEeccCCceEEEECCC
Confidence            89999986 1                  2211 112223   5678999999999977766577889999863

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.66  E-value=6.9e-13  Score=97.77  Aligned_cols=197  Identities=9%  Similarity=-0.060  Sum_probs=139.2

Q ss_pred             CCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCCC
Q psy11529          9 INPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDD   88 (244)
Q Consensus         9 ~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~   88 (244)
                      ...+.++++.++|+.+++...++.|.+|+...  .  ........+...+.++++++++..+++...++.|..||  .. 
T Consensus        14 ~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~~--~--~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~--~~-   86 (299)
T 2z2n_A           14 DTGPYGITVSDKGKVWITQHKANMISCINLDG--K--ITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRIT--KK-   86 (299)
T ss_dssp             SCCEEEEEECTTSCEEEEETTTTEEEEECTTC--C--EEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEEC--TT-
T ss_pred             CCCccceEECCCCCEEEEecCCCcEEEEcCCC--C--eEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEEC--CC-
Confidence            46799999999999887776678999999764  2  12222233456789999999999888776688899999  54 


Q ss_pred             CCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEeeCC
Q psy11529         89 KKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTD  168 (244)
Q Consensus        89 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d  168 (244)
                      ++. ...........+..+++.|+++++++...++.|..||. .+..   ...........+..++++++|+++++...+
T Consensus        87 g~~-~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~---~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~  161 (299)
T 2z2n_A           87 GII-KEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKI---REYELPNKGSYPSFITLGSDNALWFTENQN  161 (299)
T ss_dssp             SCE-EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCE---EEEECSSTTCCEEEEEECTTSCEEEEETTT
T ss_pred             CcE-EEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCE---EEecCCCCCCCCceEEEcCCCCEEEEeCCC
Confidence            432 12222224457889999999988777777888999887 3332   111222234578899999999888777677


Q ss_pred             CeEEEEEeeecccccCCCCCCCCccccccceeE-EecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeC
Q psy11529        169 FKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLV-ELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMS  239 (244)
Q Consensus       169 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~  239 (244)
                      +.|..||. .                  ++... .....   ...+..++++++|+++++...++.|.+||.
T Consensus       162 ~~i~~~~~-~------------------g~~~~~~~~~~---~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~  211 (299)
T 2z2n_A          162 NAIGRITE-S------------------GDITEFKIPTP---ASGPVGITKGNDDALWFVEIIGNKIGRITT  211 (299)
T ss_dssp             TEEEEECT-T------------------CCEEEEECSST---TCCEEEEEECTTSSEEEEETTTTEEEEECT
T ss_pred             CEEEEEcC-C------------------CcEEEeeCCCC---CCcceeEEECCCCCEEEEccCCceEEEECC
Confidence            88999986 1                  22221 12222   456889999999997777666788999987

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.66  E-value=6.3e-14  Score=105.10  Aligned_cols=195  Identities=8%  Similarity=-0.015  Sum_probs=130.6

Q ss_pred             CCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCC-----CceEEEEeCCCCCeEEEEe--CCccEEE
Q psy11529          9 INPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHD-----LKVTGIDWAPNTNRIVTCS--ADRNAYV   81 (244)
Q Consensus         9 ~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~l~~~~--~d~~i~i   81 (244)
                      ......++++++++.+++...++.|.+||..+  +  +....+....     .....+++  ++..++.+.  .++.|.+
T Consensus        83 ~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t--~--~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~v  156 (328)
T 3dsm_A           83 FTSPRYIHFLSDEKAYVTQIWDYRIFIINPKT--Y--EITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILK  156 (328)
T ss_dssp             CSSEEEEEEEETTEEEEEEBSCSEEEEEETTT--T--EEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEE
T ss_pred             CCCCcEEEEeCCCeEEEEECCCCeEEEEECCC--C--eEEEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEE
Confidence            45678899999986555554789999999977  4  4444444222     14456777  344555444  4889999


Q ss_pred             EeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCC----------CeEEEEEeecCCCceEEEeeecCCCCcee
Q psy11529         82 WTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGA----------RLISVCYFESENDWWVAKHIKKPIKSTIT  151 (244)
Q Consensus        82 wd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----------~~i~i~d~~~~~~~~~~~~~~~~~~~~v~  151 (244)
                      +|  ..+++....+.   .......++++|+|++++++..+          +.|.++|..+.+.   ......+......
T Consensus       157 iD--~~t~~~~~~i~---~g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v---~~~~~~~~g~~p~  228 (328)
T 3dsm_A          157 ID--TETDKVVDELT---IGIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTV---EKQFKFKLGDWPS  228 (328)
T ss_dssp             EE--TTTTEEEEEEE---CSSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEE---EEEEECCTTCCCE
T ss_pred             EE--CCCCeEEEEEE---cCCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeE---EEEEecCCCCCce
Confidence            99  77776544333   23456788999999877776654          7899998877653   2222222234688


Q ss_pred             EEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeE--EecCCCCCCCCeEEEEEec-CCCEEEEe
Q psy11529        152 CLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLV--ELNNSSSGGGWIHSVAFSK-DGNKLCWT  228 (244)
Q Consensus       152 ~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~s~-~~~~l~~~  228 (244)
                      .++++|+++.|+++..  .|.+||..+                  ++...  .+...   ......++++| +++++++.
T Consensus       229 ~la~~~d~~~lyv~~~--~v~~~d~~t------------------~~~~~~~~~~~~---~~~p~gi~vdp~~g~lyva~  285 (328)
T 3dsm_A          229 EVQLNGTRDTLYWINN--DIWRMPVEA------------------DRVPVRPFLEFR---DTKYYGLTVNPNNGEVYVAD  285 (328)
T ss_dssp             EEEECTTSCEEEEESS--SEEEEETTC------------------SSCCSSCSBCCC---SSCEEEEEECTTTCCEEEEE
T ss_pred             eEEEecCCCEEEEEcc--EEEEEECCC------------------CceeeeeeecCC---CCceEEEEEcCCCCeEEEEc
Confidence            9999999998887654  899999832                  22211  01111   35678999999 56666665


Q ss_pred             ----eCCCcEEEEeCC
Q psy11529        229 ----SHDGSINVRMSQ  240 (244)
Q Consensus       229 ----~~dg~i~vwd~~  240 (244)
                          ..++.|.+||.+
T Consensus       286 ~~~y~~~~~V~v~d~~  301 (328)
T 3dsm_A          286 AIDYQQQGIVYRYSPQ  301 (328)
T ss_dssp             CTTSSSEEEEEEECTT
T ss_pred             ccccccCCEEEEECCC
Confidence                568899999976

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.65  E-value=3.6e-13  Score=107.63  Aligned_cols=194  Identities=8%  Similarity=-0.062  Sum_probs=134.3

Q ss_pred             CCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCC--CCCceeeEE
Q psy11529         19 NTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNND--DKKWKPTLV   96 (244)
Q Consensus        19 ~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~--~~~~~~~~~   96 (244)
                      |.+..+++...++.|.++|..+  +  +.+..+. ....+..+.|+|+|+++++++.|+.|.+||  +.  +.+...  .
T Consensus       165 ~~~~~~V~~~~~~~V~viD~~t--~--~v~~~i~-~g~~p~~v~~SpDGr~lyv~~~dg~V~viD--~~~~t~~~v~--~  235 (567)
T 1qks_A          165 LENLFSVTLRDAGQIALIDGST--Y--EIKTVLD-TGYAVHISRLSASGRYLFVIGRDGKVNMID--LWMKEPTTVA--E  235 (567)
T ss_dssp             GGGEEEEEETTTTEEEEEETTT--C--CEEEEEE-CSSCEEEEEECTTSCEEEEEETTSEEEEEE--TTSSSCCEEE--E
T ss_pred             CCceEEEEeCCCCeEEEEECCC--C--eEEEEEe-CCCCccceEECCCCCEEEEEcCCCeEEEEE--CCCCCCcEeE--E
Confidence            3445667777889999999987  4  5566665 344567999999999999999999999999  64  554332  2


Q ss_pred             EeccCcceEEEEEC----CCCCeEEEeeC-CCeEEEEEeecCCCceEEEeeecC------C-CCceeEEEecCCCCE-EE
Q psy11529         97 LLRINRAATCVKWS----PLENKFAAGSG-ARLISVCYFESENDWWVAKHIKKP------I-KSTITCLDWHPNNHL-LG  163 (244)
Q Consensus        97 ~~~~~~~v~~~~~~----~~~~~l~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~------~-~~~v~~~~~~p~~~~-l~  163 (244)
                      +. .......++|+    |+|+++++++. ++.+.++|..+.+...........      | ...+..+..++++.. ++
T Consensus       236 i~-~G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv  314 (567)
T 1qks_A          236 IK-IGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIV  314 (567)
T ss_dssp             EE-CCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEE
T ss_pred             Ee-cCCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEE
Confidence            22 23456899999    69999887765 689999998776652222111100      1 126778888988764 44


Q ss_pred             EeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEee-CCCcEEEEeCCCC
Q psy11529        164 CGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTS-HDGSINVRMSQQV  242 (244)
Q Consensus       164 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~vwd~~~~  242 (244)
                      ....+|.|.++|....+                ...+..+..    ......+.|+|+|++++++. .++.|.++|+++.
T Consensus       315 ~~~~~g~v~~vd~~~~~----------------~~~v~~i~~----~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~  374 (567)
T 1qks_A          315 NVKETGKILLVDYTDLN----------------NLKTTEISA----ERFLHDGGLDGSHRYFITAANARNKLVVIDTKEG  374 (567)
T ss_dssp             EETTTTEEEEEETTCSS----------------EEEEEEEEC----CSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTT
T ss_pred             EecCCCeEEEEecCCCc----------------cceeeeeec----cccccCceECCCCCEEEEEeCCCCeEEEEECCCC
Confidence            45567999999973110                112233332    45678899999999887665 5789999999864

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.65  E-value=8.5e-13  Score=98.10  Aligned_cols=201  Identities=9%  Similarity=0.028  Sum_probs=132.7

Q ss_pred             CceEEEEEcCC-CCeEEEecCCCeEEEeeeccCCCcceee-eee-cc-CCCceEEEEeCCCCCeEEEEeCC---------
Q psy11529         10 NPVTTHAWNNT-RQQLAFTPNNQEVHLYQYEKAANDWSQL-DVL-DG-HDLKVTGIDWAPNTNRIVTCSAD---------   76 (244)
Q Consensus        10 ~~v~~~~~~~~-~~~l~~~~~d~~v~v~~~~~~~~~~~~~-~~~-~~-~~~~v~~~~~~~~~~~l~~~~~d---------   76 (244)
                      ..+.+++++++ |+++++.. .+.|.+|+.++  . .... ... .. ....+.+++++++|+++++...+         
T Consensus        71 ~~~~~i~~~~~~g~l~v~~~-~~~l~~~d~~g--~-~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~  146 (314)
T 1pjx_A           71 GIPAGCQCDRDANQLFVADM-RLGLLVVQTDG--T-FEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTR  146 (314)
T ss_dssp             CCEEEEEECSSSSEEEEEET-TTEEEEEETTS--C-EEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCB
T ss_pred             CCCceEEEecCCCcEEEEEC-CCCEEEEeCCC--C-EEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccc
Confidence            56889999999 76565554 44788888763  2 1111 111 11 12457899999999887776554         


Q ss_pred             ------ccEEEEeeeCCCCCceeeEEEeccCcceEEEEEC----CCCCeEEEe-eCCCeEEEEEeecCCCceE--EEeee
Q psy11529         77 ------RNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWS----PLENKFAAG-SGARLISVCYFESENDWWV--AKHIK  143 (244)
Q Consensus        77 ------~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~l~~~-~~d~~i~i~d~~~~~~~~~--~~~~~  143 (244)
                            +.|..|+  .. ++....   .........++|+    |+++.++++ ..++.|.+|+++.......  .....
T Consensus       147 ~~~~~~~~l~~~~--~~-g~~~~~---~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~  220 (314)
T 1pjx_A          147 SMQEKFGSIYCFT--TD-GQMIQV---DTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHI  220 (314)
T ss_dssp             TTSSSCEEEEEEC--TT-SCEEEE---EEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEEC
T ss_pred             cccCCCCeEEEEC--CC-CCEEEe---ccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEEC
Confidence                  4666666  44 443222   2233456789999    998766555 4678999999873221100  11112


Q ss_pred             cCCC-CceeEEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCC
Q psy11529        144 KPIK-STITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDG  222 (244)
Q Consensus       144 ~~~~-~~v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~  222 (244)
                      ..+. ..+..++++++|+++++...++.|.+||.                  .+++.+..+..+   ...+.+++|+|+|
T Consensus       221 ~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~------------------~~g~~~~~~~~~---~~~~~~i~~~~dg  279 (314)
T 1pjx_A          221 PGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGP------------------DGGQPKMRIRCP---FEKPSNLHFKPQT  279 (314)
T ss_dssp             CCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECT------------------TCBSCSEEEECS---SSCEEEEEECTTS
T ss_pred             CCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcC------------------CCCcEeEEEeCC---CCCceeEEECCCC
Confidence            2222 56788999999998888778899999997                  335555555555   5789999999999


Q ss_pred             CEEE-EeeCCCcEEEEeCCC
Q psy11529        223 NKLC-WTSHDGSINVRMSQQ  241 (244)
Q Consensus       223 ~~l~-~~~~dg~i~vwd~~~  241 (244)
                      +.|+ +...++.|..|++..
T Consensus       280 ~~l~v~~~~~~~l~~~~~~~  299 (314)
T 1pjx_A          280 KTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             SEEEEEETTTTEEEEEECSS
T ss_pred             CEEEEEeCCCCeEEEEeCCC
Confidence            9554 455678899999763

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.64  E-value=1.6e-13  Score=102.82  Aligned_cols=194  Identities=9%  Similarity=0.006  Sum_probs=132.0

Q ss_pred             ceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCCCCC
Q psy11529         11 PVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKK   90 (244)
Q Consensus        11 ~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~   90 (244)
                      ....+.+. +++.+++...++.|.++|..+  +  +.+.++. .......++++++++.+++...++.|.+||  ..+++
T Consensus        45 ~~~~i~~~-~~~lyv~~~~~~~v~viD~~t--~--~~~~~i~-~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD--~~t~~  116 (328)
T 3dsm_A           45 VAQSMVIR-DGIGWIVVNNSHVIFAIDINT--F--KEVGRIT-GFTSPRYIHFLSDEKAYVTQIWDYRIFIIN--PKTYE  116 (328)
T ss_dssp             CEEEEEEE-TTEEEEEEGGGTEEEEEETTT--C--CEEEEEE-CCSSEEEEEEEETTEEEEEEBSCSEEEEEE--TTTTE
T ss_pred             cceEEEEE-CCEEEEEEcCCCEEEEEECcc--c--EEEEEcC-CCCCCcEEEEeCCCeEEEEECCCCeEEEEE--CCCCe
Confidence            35667764 355566666679999999987  4  5555664 346678999998885444444789999999  77776


Q ss_pred             ceeeEEEec---cCcceEEEEECCCCCeEEEee--CCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEe
Q psy11529         91 WKPTLVLLR---INRAATCVKWSPLENKFAAGS--GARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCG  165 (244)
Q Consensus        91 ~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~  165 (244)
                      .........   .......+++  ++..++++.  .++.|.++|.++.+.   ......  ......+.++|+|++++++
T Consensus       117 ~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~---~~~i~~--g~~p~~i~~~~dG~l~v~~  189 (328)
T 3dsm_A          117 ITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKV---VDELTI--GIQPTSLVMDKYNKMWTIT  189 (328)
T ss_dssp             EEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEE---EEEEEC--SSCBCCCEECTTSEEEEEB
T ss_pred             EEEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeE---EEEEEc--CCCccceEEcCCCCEEEEE
Confidence            443333211   0014566777  444555554  488999999988754   222222  2345789999999977776


Q ss_pred             eCC----------CeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEE
Q psy11529        166 STD----------FKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSIN  235 (244)
Q Consensus       166 ~~d----------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~  235 (244)
                      ..+          +.|.++|.                  .+++....+....  ......++|+|+++.|+++..  .|.
T Consensus       190 ~~~~~~~~~~~~~~~v~~id~------------------~t~~v~~~~~~~~--g~~p~~la~~~d~~~lyv~~~--~v~  247 (328)
T 3dsm_A          190 DGGYEGSPYGYEAPSLYRIDA------------------ETFTVEKQFKFKL--GDWPSEVQLNGTRDTLYWINN--DIW  247 (328)
T ss_dssp             CCBCTTCSSCBCCCEEEEEET------------------TTTEEEEEEECCT--TCCCEEEEECTTSCEEEEESS--SEE
T ss_pred             CCCccCCccccCCceEEEEEC------------------CCCeEEEEEecCC--CCCceeEEEecCCCEEEEEcc--EEE
Confidence            654          78999998                  5566655554321  336899999999998887754  899


Q ss_pred             EEeCCC
Q psy11529        236 VRMSQQ  241 (244)
Q Consensus       236 vwd~~~  241 (244)
                      +||+.+
T Consensus       248 ~~d~~t  253 (328)
T 3dsm_A          248 RMPVEA  253 (328)
T ss_dssp             EEETTC
T ss_pred             EEECCC
Confidence            999865

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.63  E-value=2.3e-12  Score=95.25  Aligned_cols=192  Identities=11%  Similarity=0.063  Sum_probs=127.0

Q ss_pred             CCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeecc--CCCceEEEEeCCCCCeEEEEeCC---------c
Q psy11529          9 INPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDG--HDLKVTGIDWAPNTNRIVTCSAD---------R   77 (244)
Q Consensus         9 ~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d---------~   77 (244)
                      ...+.+++++++|+++++ . ++.|.+||.++  +..+.+.....  ....++.++++|+|+++++....         .
T Consensus        53 ~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~--g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~  128 (297)
T 3g4e_A           53 DAPVSSVALRQSGGYVAT-I-GTKFCALNWKE--QSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERH  128 (297)
T ss_dssp             SSCEEEEEEBTTSSEEEE-E-TTEEEEEETTT--TEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTT
T ss_pred             CCceEEEEECCCCCEEEE-E-CCeEEEEECCC--CcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCC
Confidence            467899999999996554 3 56899999876  43333332221  12457899999999976654321         2


Q ss_pred             cEEEEeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEe-eCCCeEEEEEeecCC-CceEEE--eeecCCCCceeEE
Q psy11529         78 NAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAG-SGARLISVCYFESEN-DWWVAK--HIKKPIKSTITCL  153 (244)
Q Consensus        78 ~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~i~d~~~~~-~~~~~~--~~~~~~~~~v~~~  153 (244)
                      .-.+|.++. .++...   ........+.++|+|+++.|+.+ +.++.|.+|+++... ......  ............+
T Consensus       129 ~~~l~~~d~-~g~~~~---~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~  204 (297)
T 3g4e_A          129 QGALYSLFP-DHHVKK---YFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGM  204 (297)
T ss_dssp             CEEEEEECT-TSCEEE---EEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEE
T ss_pred             CcEEEEEEC-CCCEEE---EeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCee
Confidence            345555313 333221   22334557899999999876554 557889999985222 111111  1112233567899


Q ss_pred             EecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEe-cCCCEEEEee
Q psy11529        154 DWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFS-KDGNKLCWTS  229 (244)
Q Consensus       154 ~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~  229 (244)
                      +++++|++.++....+.|.+||.                  .+++.+..+..+   ...+++++|. |+++.|+..+
T Consensus       205 ~~d~~G~lwva~~~~~~v~~~d~------------------~tG~~~~~i~~p---~~~~t~~~f~g~d~~~L~vt~  260 (297)
T 3g4e_A          205 CIDAEGKLWVACYNGGRVIRLDP------------------VTGKRLQTVKLP---VDKTTSCCFGGKNYSEMYVTC  260 (297)
T ss_dssp             EEBTTSCEEEEEETTTEEEEECT------------------TTCCEEEEEECS---SSBEEEEEEESGGGCEEEEEE
T ss_pred             EECCCCCEEEEEcCCCEEEEEcC------------------CCceEEEEEECC---CCCceEEEEeCCCCCEEEEEc
Confidence            99999988888777889999997                  567888888776   6789999998 8887655443

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.62  E-value=3.7e-13  Score=103.77  Aligned_cols=203  Identities=10%  Similarity=-0.032  Sum_probs=131.0

Q ss_pred             CceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCc--cEEEEeeeCC
Q psy11529         10 NPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADR--NAYVWTQNND   87 (244)
Q Consensus        10 ~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~--~i~iwd~~~~   87 (244)
                      .....++|+++++++++...++.|++|+..+  +  ........ ..... ++|+|+++.|+++..++  .|.+++  ..
T Consensus       131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~--g--~~~~~~~~-~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d--~~  202 (409)
T 3hrp_A          131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDD--N--KVTTVHPG-FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYM--KA  202 (409)
T ss_dssp             CCEEEEEECSTTEEEEEETTTTEEEEEETTT--T--EEEEEEET-CCBCB-CEECTTSSEEEEEBSSTTCEEEEEE--GG
T ss_pred             CCceEEEEeCCCCEEEEecCCCcEEEEECCC--C--EEEEeecc-CCCCc-eeEecCCCcEEEEecCCCceEEEEE--cC
Confidence            4678899999999888877789999999986  3  22222332 23334 99999999988887765  788888  54


Q ss_pred             CCCceeeE-EEec-cCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCce--eEEEecCC-CCEE
Q psy11529         88 DKKWKPTL-VLLR-INRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTI--TCLDWHPN-NHLL  162 (244)
Q Consensus        88 ~~~~~~~~-~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v--~~~~~~p~-~~~l  162 (244)
                      .+...... .... ....+.+++++|++..|+++..++.|+.||.+..................-  ..++|+|+ +.++
T Consensus       203 ~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~ly  282 (409)
T 3hrp_A          203 SGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFY  282 (409)
T ss_dssp             GTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEE
T ss_pred             CCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEE
Confidence            44321111 1112 345678999999655666677788899999876643100000011121222  39999995 5566


Q ss_pred             EEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCC------------CCCCCeEEEEEecCCCEEEEee-
Q psy11529        163 GCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSS------------SGGGWIHSVAFSKDGNKLCWTS-  229 (244)
Q Consensus       163 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~v~~~~~s~~~~~l~~~~-  229 (244)
                      ++-..++.|+.|+...                   . +..+.++.            ..-.....++++|+|+++++-+ 
T Consensus       283 v~d~~~~~I~~~~~~g-------------------~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~  342 (409)
T 3hrp_A          283 MSDQNLSSVYKITPDG-------------------E-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGF  342 (409)
T ss_dssp             EEETTTTEEEEECTTC-------------------C-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETT
T ss_pred             EEeCCCCEEEEEecCC-------------------C-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCC
Confidence            6666778999998631                   1 11111110            0023478999999999777777 


Q ss_pred             CCCcEEEEeCC
Q psy11529        230 HDGSINVRMSQ  240 (244)
Q Consensus       230 ~dg~i~vwd~~  240 (244)
                      .++.|+.|++.
T Consensus       343 ~~~~I~~~~~~  353 (409)
T 3hrp_A          343 KGYCLRKLDIL  353 (409)
T ss_dssp             TTCEEEEEETT
T ss_pred             CCCEEEEEECC
Confidence            78899999954

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.62  E-value=1.1e-12  Score=96.94  Aligned_cols=204  Identities=11%  Similarity=0.077  Sum_probs=131.5

Q ss_pred             CceEEEEEcCCC-CeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCCC
Q psy11529         10 NPVTTHAWNNTR-QQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDD   88 (244)
Q Consensus        10 ~~v~~~~~~~~~-~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~   88 (244)
                      .--.+..|+|++ .++++...++.|+.|+..+  +   ....+. ....+.+++++++|+++++ . +..|.+||  ..+
T Consensus        13 ~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~--~---~~~~~~-~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d--~~~   82 (297)
T 3g4e_A           13 RCGESPVWEEVSNSLLFVDIPAKKVCRWDSFT--K---QVQRVT-MDAPVSSVALRQSGGYVAT-I-GTKFCALN--WKE   82 (297)
T ss_dssp             SBEEEEEEETTTTEEEEEETTTTEEEEEETTT--C---CEEEEE-CSSCEEEEEEBTTSSEEEE-E-TTEEEEEE--TTT
T ss_pred             ccccCCeEECCCCEEEEEECCCCEEEEEECCC--C---cEEEEe-CCCceEEEEECCCCCEEEE-E-CCeEEEEE--CCC
Confidence            445688999965 4566666788999999877  3   223333 4577999999999995554 3 56799999  777


Q ss_pred             CCceeeEEEec--cCcceEEEEECCCCCeEEEeeC---------CCeEEEEEeecCCCceEEEeeecCCCCceeEEEecC
Q psy11529         89 KKWKPTLVLLR--INRAATCVKWSPLENKFAAGSG---------ARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHP  157 (244)
Q Consensus        89 ~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~---------d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p  157 (244)
                      ++.........  ....++.++++|+|+++++...         ...-.+|.++.....   ... .......+.++|+|
T Consensus        83 g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~---~~~-~~~~~~pngi~~sp  158 (297)
T 3g4e_A           83 QSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHV---KKY-FDQVDISNGLDWSL  158 (297)
T ss_dssp             TEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCE---EEE-EEEESBEEEEEECT
T ss_pred             CcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCE---EEE-eeccccccceEEcC
Confidence            66433322111  1245789999999996665432         234567777654331   111 12224567899999


Q ss_pred             CCCEEE-EeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEE
Q psy11529        158 NNHLLG-CGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINV  236 (244)
Q Consensus       158 ~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v  236 (244)
                      +++.|+ +.+.++.|.+||+....-.           ....+.+..+..+   ......++++++|++.++....+.|.+
T Consensus       159 dg~~lyv~~~~~~~i~~~~~d~~~G~-----------~~~~~~~~~~~~~---~~~p~g~~~d~~G~lwva~~~~~~v~~  224 (297)
T 3g4e_A          159 DHKIFYYIDSLSYSVDAFDYDLQTGQ-----------ISNRRSVYKLEKE---EQIPDGMCIDAEGKLWVACYNGGRVIR  224 (297)
T ss_dssp             TSCEEEEEEGGGTEEEEEEECTTTCC-----------EEEEEEEEECCGG---GCEEEEEEEBTTSCEEEEEETTTEEEE
T ss_pred             CCCEEEEecCCCCcEEEEeccCCCCc-----------ccCcEEEEECCCC---CCCCCeeEECCCCCEEEEEcCCCEEEE
Confidence            998664 4555789999997311000           0011223333333   456789999999998888777888999


Q ss_pred             EeCCC
Q psy11529        237 RMSQQ  241 (244)
Q Consensus       237 wd~~~  241 (244)
                      ||.++
T Consensus       225 ~d~~t  229 (297)
T 3g4e_A          225 LDPVT  229 (297)
T ss_dssp             ECTTT
T ss_pred             EcCCC
Confidence            99863

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.61  E-value=1.4e-12  Score=96.84  Aligned_cols=191  Identities=12%  Similarity=0.046  Sum_probs=126.9

Q ss_pred             eCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeee-eeccC-CCceEEEEeCCCCCeEEE----EeC-----
Q psy11529          7 FGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLD-VLDGH-DLKVTGIDWAPNTNRIVT----CSA-----   75 (244)
Q Consensus         7 ~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~-~~~~~-~~~v~~~~~~~~~~~l~~----~~~-----   75 (244)
                      .....+..++++++|+++++...++.|.+|+.++  . ...+. ...+. ...++.++++|+|+.+++    |..     
T Consensus        83 ~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~g--~-~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~  159 (305)
T 3dr2_A           83 DATAFTNGNAVDAQQRLVHCEHGRRAITRSDADG--Q-AHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQG  159 (305)
T ss_dssp             ESCSCEEEEEECTTSCEEEEETTTTEEEEECTTS--C-EEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGS
T ss_pred             CCCCccceeeECCCCCEEEEECCCCEEEEECCCC--C-EEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccc
Confidence            3456788999999999777666667899998754  2 12221 11111 234678999999998876    332     


Q ss_pred             --------CccEEEEeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCC------CeEEEEEeecCCCceEEEe
Q psy11529         76 --------DRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGA------RLISVCYFESENDWWVAKH  141 (244)
Q Consensus        76 --------d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------~~i~i~d~~~~~~~~~~~~  141 (244)
                              .+.|..+|  ..+++.....    .......++|+|+++.|+++...      +.|.+|++.... ......
T Consensus       160 ~~~~~~~~~~~v~~~d--~~~g~~~~~~----~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~~  232 (305)
T 3dr2_A          160 CPADPELAHHSVYRLP--PDGSPLQRMA----DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRRH  232 (305)
T ss_dssp             CCCCCSSSCEEEEEEC--SSSCCCEEEE----EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE-EEEEEE
T ss_pred             cccccccCCCeEEEEc--CCCCcEEEEe----cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCCeE
Confidence                    24566666  6566543222    33456789999999988877665      689999987653 111112


Q ss_pred             eecCCCCceeEEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecC
Q psy11529        142 IKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKD  221 (244)
Q Consensus       142 ~~~~~~~~v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  221 (244)
                      ...........++++++|++.++ +.+ .|.+|+.                   .++.+..+..+   . .+.+++|+|+
T Consensus       233 ~~~~~~~~pdgi~~d~~G~lwv~-~~~-gv~~~~~-------------------~g~~~~~~~~~---~-~~~~~~f~~d  287 (305)
T 3dr2_A          233 FASVPDGLPDGFCVDRGGWLWSS-SGT-GVCVFDS-------------------DGQLLGHIPTP---G-TASNCTFDQA  287 (305)
T ss_dssp             EECCSSSCCCSEEECTTSCEEEC-CSS-EEEEECT-------------------TSCEEEEEECS---S-CCCEEEECTT
T ss_pred             EEECCCCCCCeEEECCCCCEEEe-cCC-cEEEECC-------------------CCCEEEEEECC---C-ceeEEEEeCC
Confidence            22222345667899999985544 444 4888985                   46677777664   4 5889999999


Q ss_pred             CCEEEEeeCCC
Q psy11529        222 GNKLCWTSHDG  232 (244)
Q Consensus       222 ~~~l~~~~~dg  232 (244)
                      ++.|..++.++
T Consensus       288 ~~~L~it~~~~  298 (305)
T 3dr2_A          288 QQRLFITGGPC  298 (305)
T ss_dssp             SCEEEEEETTE
T ss_pred             CCEEEEEcCCe
Confidence            98888777654

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.61  E-value=1.9e-13  Score=113.24  Aligned_cols=196  Identities=10%  Similarity=-0.051  Sum_probs=121.1

Q ss_pred             cCCCCeEEEecCCC---eEEEeeeccC---CCcceeeee----eccCCCceEEEEeCCCCCeEEEEeCC-----ccEEEE
Q psy11529         18 NNTRQQLAFTPNNQ---EVHLYQYEKA---ANDWSQLDV----LDGHDLKVTGIDWAPNTNRIVTCSAD-----RNAYVW   82 (244)
Q Consensus        18 ~~~~~~l~~~~~d~---~v~v~~~~~~---~~~~~~~~~----~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~iw   82 (244)
                      +|+|++++....++   .-.+|.....   ++..+.+..    -.+|...+..++|||||++|+.++.+     ..|++|
T Consensus       115 ~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~  194 (741)
T 1yr2_A          115 QRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFV  194 (741)
T ss_dssp             EEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEE
T ss_pred             EEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEE
Confidence            48999888765433   2555655321   132222211    12234478899999999999877653     469999


Q ss_pred             eeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCe--------------EEEEEeecCCCceEEEeeecCCCC
Q psy11529         83 TQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARL--------------ISVCYFESENDWWVAKHIKKPIKS  148 (244)
Q Consensus        83 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~--------------i~i~d~~~~~~~~~~~~~~~~~~~  148 (244)
                      |  +.+++.... .  .....+..++|+|| +.|+.+..++.              |++|++.+.............+..
T Consensus       195 d--l~tg~~~~~-~--~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~  268 (741)
T 1yr2_A          195 G--VADGKPLAD-E--LKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPK  268 (741)
T ss_dssp             E--TTTCCEEEE-E--EEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTT
T ss_pred             E--CCCCCCCCc-c--CCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCe
Confidence            9  788875332 1  12222467899999 99888876553              778887655421112222222333


Q ss_pred             ceeEEEecCCCCEEEEeeCCC-----eEEEEEeeecccccCCCCCCCCcccccc--ceeEEecCCCCCCCCeEEEEEecC
Q psy11529        149 TITCLDWHPNNHLLGCGSTDF-----KVRVFSAYIKDIESAPQSTNWGSKSTLG--NCLVELNNSSSGGGWIHSVAFSKD  221 (244)
Q Consensus       149 ~v~~~~~~p~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~v~~~~~s~~  221 (244)
                      .+..+.|+|||++|+..+.++     .|++||+.                  .+  +....+..+   ...+... ++|+
T Consensus       269 ~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~------------------~~~~~~~~~l~~~---~~~~~~~-~~~d  326 (741)
T 1yr2_A          269 RGHGASVSSDGRWVVITSSEGTDPVNTVHVARVT------------------NGKIGPVTALIPD---LKAQWDF-VDGV  326 (741)
T ss_dssp             CEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEE------------------TTEECCCEEEECS---SSSCEEE-EEEE
T ss_pred             EEEEEEECCCCCEEEEEEEccCCCcceEEEEECC------------------CCCCcccEEecCC---CCceEEE-Eecc
Confidence            588999999999888777543     89999983                  23  213334443   3344444 3588


Q ss_pred             CCEEEEeeCC----CcEEEEeCCC
Q psy11529        222 GNKLCWTSHD----GSINVRMSQQ  241 (244)
Q Consensus       222 ~~~l~~~~~d----g~i~vwd~~~  241 (244)
                      |+.|+..+.+    +.|.+||+.+
T Consensus       327 g~~l~~~s~~~~~~~~l~~~d~~~  350 (741)
T 1yr2_A          327 GDQLWFVSGDGAPLKKIVRVDLSG  350 (741)
T ss_dssp             TTEEEEEECTTCTTCEEEEEECSS
T ss_pred             CCEEEEEECCCCCCCEEEEEeCCC
Confidence            9988777653    4599999865

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.61  E-value=7e-13  Score=100.69  Aligned_cols=89  Identities=13%  Similarity=0.049  Sum_probs=69.9

Q ss_pred             EEECCCCCeEEEeeC-----------CCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEeeCCCeEEEEE
Q psy11529        107 VKWSPLENKFAAGSG-----------ARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFS  175 (244)
Q Consensus       107 ~~~~~~~~~l~~~~~-----------d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~i~i~d  175 (244)
                      ++|+|+++.++++..           .+.|.+||+.+.+.   .... ..+.  +.+++|+|||++|++++. +.|.+||
T Consensus       259 ~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~---v~~i-~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D  331 (361)
T 2oiz_A          259 VGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQR---VARI-PGRD--ALSMTIDQQRNLMLTLDG-GNVNVYD  331 (361)
T ss_dssp             EEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEE---EEEE-ECTT--CCEEEEETTTTEEEEECS-SCEEEEE
T ss_pred             EEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcE---EEEE-ecCC--eeEEEECCCCCEEEEeCC-CeEEEEE
Confidence            789999888777643           35799999888754   2222 2332  899999999999998886 9999999


Q ss_pred             eeecccccCCCCCCCCcccccc--ceeEEecCCCCCCCCeEEEEEecCCC
Q psy11529        176 AYIKDIESAPQSTNWGSKSTLG--NCLVELNNSSSGGGWIHSVAFSKDGN  223 (244)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~v~~~~~s~~~~  223 (244)
                      .                  .++  +.+..+...   ......++++|+|+
T Consensus       332 ~------------------~t~~l~~~~~i~~~---G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          332 I------------------SQPEPKLLRTIEGA---AEASLQVQFHPVGG  360 (361)
T ss_dssp             C------------------SSSSCEEEEEETTS---CSSEEEEEECCCSC
T ss_pred             C------------------CCCcceeeEEeccC---CCCcEEEEecCCCC
Confidence            9                  677  888887655   77789999999986

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.60  E-value=5.8e-12  Score=92.83  Aligned_cols=197  Identities=9%  Similarity=-0.074  Sum_probs=136.7

Q ss_pred             CceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCCCC
Q psy11529         10 NPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDK   89 (244)
Q Consensus        10 ~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~   89 (244)
                      ..+.++++.++|+++++...++.|..++..+  .  .....+......+.+++++++++++++...++.|..+|  .. +
T Consensus        62 ~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~g--~--~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~--~~-g  134 (300)
T 2qc5_A           62 AKVMCLIVSSLGDIWFTENGANKIGKLSKKG--G--FTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLT--AD-G  134 (300)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTS--C--EEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEC--TT-S
T ss_pred             CcceeEEECCCCCEEEEecCCCeEEEECCCC--C--eEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEEC--CC-C
Confidence            5688999999999887776678899998764  2  22222332346789999999998887776678899999  55 5


Q ss_pred             CceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEeeCCC
Q psy11529         90 KWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDF  169 (244)
Q Consensus        90 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg  169 (244)
                      +.. ..........+..+++.++++.+++...++.|..++. .++.   ...........+..++++++|+++++....+
T Consensus       135 ~~~-~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~---~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~  209 (300)
T 2qc5_A          135 TIY-EYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKL---EEYPLPTNAAAPVGITSGNDGALWFVEIMGN  209 (300)
T ss_dssp             CEE-EEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCE---EEEECSSTTCCEEEEEECTTSSEEEEETTTT
T ss_pred             CEE-EccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcE---EEeeCCCCCCCcceEEECCCCCEEEEccCCC
Confidence            432 2222223467889999999986666666788888887 3332   1111222335688999999998777766677


Q ss_pred             eEEEEEeeecccccCCCCCCCCccccccceeE-EecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCC
Q psy11529        170 KVRVFSAYIKDIESAPQSTNWGSKSTLGNCLV-ELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQ  240 (244)
Q Consensus       170 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~  240 (244)
                      .|.+||.                   .++... ....+   ...+.+++++++|++.++...++.|..||..
T Consensus       210 ~i~~~~~-------------------~g~~~~~~~~~~---~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~  259 (300)
T 2qc5_A          210 KIGRITT-------------------TGEISEYDIPTP---NARPHAITAGKNSEIWFTEWGANQIGRITND  259 (300)
T ss_dssp             EEEEECT-------------------TCCEEEEECSST---TCCEEEEEECSTTCEEEEETTTTEEEEECTT
T ss_pred             EEEEEcC-------------------CCcEEEEECCCC---CCCceEEEECCCCCEEEeccCCCeEEEECCC
Confidence            8999985                   122221 12223   5668899999999977766667889988864

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.60  E-value=5.4e-12  Score=93.00  Aligned_cols=198  Identities=7%  Similarity=-0.090  Sum_probs=138.5

Q ss_pred             CCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCCC
Q psy11529          9 INPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDD   88 (244)
Q Consensus         9 ~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~   88 (244)
                      ...+.++++.++|+.+++...++.|.+|+...  .  .....+......+.+++++++++.+++...++.|..+|  .. 
T Consensus        19 ~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~--~--~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d--~~-   91 (300)
T 2qc5_A           19 DSGPYGITSSEDGKVWFTQHKANKISSLDQSG--R--IKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLS--KK-   91 (300)
T ss_dssp             TCCEEEEEECTTSCEEEEETTTTEEEEECTTS--C--EEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEEC--TT-
T ss_pred             CCCcceeeECCCCCEEEEcCCCCeEEEECCCC--c--eEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEEC--CC-
Confidence            45788999999999888777789999999763  2  12222333446789999999998777766678899999  55 


Q ss_pred             CCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEeeCC
Q psy11529         89 KKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTD  168 (244)
Q Consensus        89 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d  168 (244)
                      ++.. ..........+..+++.++++++++...++.|..++.+ ++.   ...........+..++++++|+++++...+
T Consensus        92 g~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~---~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~  166 (300)
T 2qc5_A           92 GGFT-EYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTI---YEYDLPNKGSYPAFITLGSDNALWFTENQN  166 (300)
T ss_dssp             SCEE-EEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCE---EEEECSSTTCCEEEEEECTTSSEEEEETTT
T ss_pred             CCeE-EecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCE---EEccCCCCCCCceeEEECCCCCEEEEecCC
Confidence            5432 22222234678999999999887777667888888876 332   111122234578899999999977766667


Q ss_pred             CeEEEEEeeecccccCCCCCCCCccccccceeE-EecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCC
Q psy11529        169 FKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLV-ELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQ  240 (244)
Q Consensus       169 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~  240 (244)
                      +.|..+|.                   .++... ....+   ...+..++++++|++.++....+.|.+||..
T Consensus       167 ~~i~~~~~-------------------~g~~~~~~~~~~---~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~  217 (300)
T 2qc5_A          167 NSIGRITN-------------------TGKLEEYPLPTN---AAAPVGITSGNDGALWFVEIMGNKIGRITTT  217 (300)
T ss_dssp             TEEEEECT-------------------TCCEEEEECSST---TCCEEEEEECTTSSEEEEETTTTEEEEECTT
T ss_pred             CeEEEECC-------------------CCcEEEeeCCCC---CCCcceEEECCCCCEEEEccCCCEEEEEcCC
Confidence            88999885                   122221 12222   4568899999999877776667789998873

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.60  E-value=1.5e-12  Score=96.77  Aligned_cols=204  Identities=10%  Similarity=0.013  Sum_probs=129.4

Q ss_pred             CCceEEEEEcCCCCeEEE-------ecCCCeEEEeeeccCCCcceeeee--eccCCCceEEEEeCCC-CCeEEEEeCCcc
Q psy11529          9 INPVTTHAWNNTRQQLAF-------TPNNQEVHLYQYEKAANDWSQLDV--LDGHDLKVTGIDWAPN-TNRIVTCSADRN   78 (244)
Q Consensus         9 ~~~v~~~~~~~~~~~l~~-------~~~d~~v~v~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~-~~~l~~~~~d~~   78 (244)
                      -....+++|+++++++++       +..++.|.+|+..+  ++......  ..++...+.+++++++ ++++++.. .+.
T Consensus        17 ~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~--g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~-~~~   93 (314)
T 1pjx_A           17 IPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKT--GKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM-RLG   93 (314)
T ss_dssp             CTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTT--CCEEEEECCEETTEECCEEEEEECSSSSEEEEEET-TTE
T ss_pred             CCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCC--CcEEEEEecccCCCCCCCceEEEecCCCcEEEEEC-CCC
Confidence            345679999999988887       56788999999766  32222111  0124467899999998 76555443 447


Q ss_pred             EEEEeeeCCCCCceee-EEEe--ccCcceEEEEECCCCCeEEEeeCC---------------CeEEEEEeecCCCceEEE
Q psy11529         79 AYVWTQNNDDKKWKPT-LVLL--RINRAATCVKWSPLENKFAAGSGA---------------RLISVCYFESENDWWVAK  140 (244)
Q Consensus        79 i~iwd~~~~~~~~~~~-~~~~--~~~~~v~~~~~~~~~~~l~~~~~d---------------~~i~i~d~~~~~~~~~~~  140 (244)
                      |.+||  .. ++.... ....  .....+.+++++++|+++++...+               +.|..++.+  ..   ..
T Consensus        94 l~~~d--~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--g~---~~  165 (314)
T 1pjx_A           94 LLVVQ--TD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD--GQ---MI  165 (314)
T ss_dssp             EEEEE--TT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT--SC---EE
T ss_pred             EEEEe--CC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC--CC---EE
Confidence            88999  65 553221 1100  112357899999999877766554               345555433  22   11


Q ss_pred             eeecCCCCceeEEEec----CCCCEEEEe-eCCCeEEEEEeee-cccccCCCCCCCCccccccceeEEecCCCCCC-CCe
Q psy11529        141 HIKKPIKSTITCLDWH----PNNHLLGCG-STDFKVRVFSAYI-KDIESAPQSTNWGSKSTLGNCLVELNNSSSGG-GWI  213 (244)
Q Consensus       141 ~~~~~~~~~v~~~~~~----p~~~~l~~~-~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v  213 (244)
                      .. .........++|+    |+++.++.+ ..++.|.+||+.. ...             ...+....+..+   . ..+
T Consensus       166 ~~-~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~-------------~~~~~~~~~~~~---~~~~p  228 (314)
T 1pjx_A          166 QV-DTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKI-------------ENKKVWGHIPGT---HEGGA  228 (314)
T ss_dssp             EE-EEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEE-------------EEEEEEEECCCC---SSCEE
T ss_pred             Ee-ccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCcc-------------ccceEEEECCCC---CCCCC
Confidence            11 1122356789999    999765544 5678999999741 100             001123333332   3 568


Q ss_pred             EEEEEecCCCEEEEeeCCCcEEEEeCC
Q psy11529        214 HSVAFSKDGNKLCWTSHDGSINVRMSQ  240 (244)
Q Consensus       214 ~~~~~s~~~~~l~~~~~dg~i~vwd~~  240 (244)
                      ..++++++|+++++...++.|.+||.+
T Consensus       229 ~~i~~d~~G~l~v~~~~~~~i~~~d~~  255 (314)
T 1pjx_A          229 DGMDFDEDNNLLVANWGSSHIEVFGPD  255 (314)
T ss_dssp             EEEEEBTTCCEEEEEETTTEEEEECTT
T ss_pred             CceEECCCCCEEEEEcCCCEEEEEcCC
Confidence            899999999988888788999999987

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.57  E-value=2.6e-13  Score=111.60  Aligned_cols=197  Identities=13%  Similarity=0.080  Sum_probs=121.7

Q ss_pred             CceEEEEEcCCCCeEEEe-----cCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCc-------
Q psy11529         10 NPVTTHAWNNTRQQLAFT-----PNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADR-------   77 (244)
Q Consensus        10 ~~v~~~~~~~~~~~l~~~-----~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-------   77 (244)
                      ..+..++|||||++||.+     +....|+++|+.+  ++.... .+..  .....++|+ |++.|+.++.+.       
T Consensus       129 ~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~t--g~~~~~-~~~~--~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~  202 (693)
T 3iuj_A          129 TALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVES--KQPLET-PLKD--VKFSGISWL-GNEGFFYSSYDKPDGSELS  202 (693)
T ss_dssp             CEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTT--CSEEEE-EEEE--EESCCCEEE-TTTEEEEEESSCCC-----
T ss_pred             EEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCC--CCCCcc-ccCC--ceeccEEEe-CCCEEEEEEecCccccccc
Confidence            458889999999999864     3336899999987  422111 2221  113568899 999998887764       


Q ss_pred             ------cEEEEeeeCCCCCceeeEEEe--c-cCcceEEEEECCCCCeEEEeeC----CCeEEEEEeecCCCceEEEeeec
Q psy11529         78 ------NAYVWTQNNDDKKWKPTLVLL--R-INRAATCVKWSPLENKFAAGSG----ARLISVCYFESENDWWVAKHIKK  144 (244)
Q Consensus        78 ------~i~iwd~~~~~~~~~~~~~~~--~-~~~~v~~~~~~~~~~~l~~~~~----d~~i~i~d~~~~~~~~~~~~~~~  144 (244)
                            .|++|+  +.++.........  . +......+.|+|||++|+....    ...+.++|++.....  ... ..
T Consensus       203 ~~~~~~~v~~~~--lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~--~~~-l~  277 (693)
T 3iuj_A          203 ARTDQHKVYFHR--LGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAP--LLT-VQ  277 (693)
T ss_dssp             --CCCCEEEEEE--TTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCC--CEE-EE
T ss_pred             ccCCCcEEEEEE--CCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCc--eEE-Ee
Confidence                  388999  6555432222222  2 3345778999999998765433    347888888776421  112 22


Q ss_pred             CCCCceeEEEecCCCCEEEEee-CC---CeEEEEEeeecccccCCCCCCCCccccccce--eEEecCCCCCCCCeEEEEE
Q psy11529        145 PIKSTITCLDWHPNNHLLGCGS-TD---FKVRVFSAYIKDIESAPQSTNWGSKSTLGNC--LVELNNSSSGGGWIHSVAF  218 (244)
Q Consensus       145 ~~~~~v~~~~~~p~~~~l~~~~-~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~v~~~~~  218 (244)
                      .+....... ++++|..|+..+ .+   +.|..+|+.                  .+..  ...+..+   ...+.  .|
T Consensus       278 ~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~------------------~~~~~~~~~l~~~---~~~~~--~~  333 (693)
T 3iuj_A          278 GDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAA------------------NPGPAHWRDLIPE---RQQVL--TV  333 (693)
T ss_dssp             CSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETT------------------SCCGGGCEEEECC---CSSCE--EE
T ss_pred             CCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCC------------------CCCccccEEEecC---CCCEE--EE
Confidence            233333343 667666555444 33   578888873                  2221  2334444   44443  88


Q ss_pred             ecCCCEEEEeeC-CC--cEEEEeCCC
Q psy11529        219 SKDGNKLCWTSH-DG--SINVRMSQQ  241 (244)
Q Consensus       219 s~~~~~l~~~~~-dg--~i~vwd~~~  241 (244)
                      ++++++|+.... ++  .|++|+++.
T Consensus       334 s~~g~~lv~~~~~~g~~~l~~~d~~g  359 (693)
T 3iuj_A          334 HSGSGYLFAEYMVDATARVEQFDYEG  359 (693)
T ss_dssp             EEETTEEEEEEEETTEEEEEEECTTS
T ss_pred             EEECCEEEEEEEECCeeEEEEEECCC
Confidence            999988776654 44  688888753

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.56  E-value=9e-12  Score=93.30  Aligned_cols=199  Identities=7%  Similarity=0.026  Sum_probs=125.9

Q ss_pred             ceEEEEEcCCCC-eEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCCCC
Q psy11529         11 PVTTHAWNNTRQ-QLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDK   89 (244)
Q Consensus        11 ~v~~~~~~~~~~-~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~   89 (244)
                      -..+..|+|++. ++++...++.|..|+..+  +   ....+. ....+.+++|+|+|+++++. .+ .|.+||  ..++
T Consensus        50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~--~---~~~~~~-~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d--~~~g  119 (326)
T 2ghs_A           50 LGEGPTFDPASGTAWWFNILERELHELHLAS--G---RKTVHA-LPFMGSALAKISDSKQLIAS-DD-GLFLRD--TATG  119 (326)
T ss_dssp             BEEEEEEETTTTEEEEEEGGGTEEEEEETTT--T---EEEEEE-CSSCEEEEEEEETTEEEEEE-TT-EEEEEE--TTTC
T ss_pred             CCcCCeEeCCCCEEEEEECCCCEEEEEECCC--C---cEEEEE-CCCcceEEEEeCCCeEEEEE-CC-CEEEEE--CCCC
Confidence            356889999754 556666678999999877  3   222333 35679999999999877754 34 488999  7777


Q ss_pred             CceeeEEEec--cCcceEEEEECCCCCeEEEeeCC----CeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEE
Q psy11529         90 KWKPTLVLLR--INRAATCVKWSPLENKFAAGSGA----RLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLG  163 (244)
Q Consensus        90 ~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d----~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~  163 (244)
                      +.........  ....++.++++|+|+++++...+    ....+|.++.+ .   ..... ........++|+|+++.++
T Consensus       120 ~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~~g-~---~~~~~-~~~~~~~~i~~s~dg~~ly  194 (326)
T 2ghs_A          120 VLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKG-K---VTKLF-ADISIPNSICFSPDGTTGY  194 (326)
T ss_dssp             CEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETT-E---EEEEE-EEESSEEEEEECTTSCEEE
T ss_pred             cEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEeCC-c---EEEee-CCCcccCCeEEcCCCCEEE
Confidence            6432221111  12458899999999876654321    23445555532 2   11111 1223567899999998665


Q ss_pred             Ee-eCCCeEEEEEee--ec-ccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeC
Q psy11529        164 CG-STDFKVRVFSAY--IK-DIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMS  239 (244)
Q Consensus       164 ~~-~~dg~i~i~d~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~  239 (244)
                      .+ +.++.|.+||+.  .. .+             ...+.+..+...   ......++++++|++.++...++.|.+||.
T Consensus       195 v~~~~~~~I~~~d~~~~~Gl~~-------------~~~~~~~~~~~~---~~~p~gi~~d~~G~lwva~~~~~~v~~~d~  258 (326)
T 2ghs_A          195 FVDTKVNRLMRVPLDARTGLPT-------------GKAEVFIDSTGI---KGGMDGSVCDAEGHIWNARWGEGAVDRYDT  258 (326)
T ss_dssp             EEETTTCEEEEEEBCTTTCCBS-------------SCCEEEEECTTS---SSEEEEEEECTTSCEEEEEETTTEEEEECT
T ss_pred             EEECCCCEEEEEEcccccCCcc-------------cCceEEEECCCC---CCCCCeeEECCCCCEEEEEeCCCEEEEECC
Confidence            54 456899999973  11 10             011223333333   455778999999987777766788999987


Q ss_pred             C
Q psy11529        240 Q  240 (244)
Q Consensus       240 ~  240 (244)
                      +
T Consensus       259 ~  259 (326)
T 2ghs_A          259 D  259 (326)
T ss_dssp             T
T ss_pred             C
Confidence            4

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.55  E-value=1.3e-13  Score=104.50  Aligned_cols=144  Identities=10%  Similarity=0.003  Sum_probs=107.2

Q ss_pred             ceEEEEeCCCCCeEEEEeCCccEEEEeeeCCCCC---------ceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEE
Q psy11529         57 KVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKK---------WKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISV  127 (244)
Q Consensus        57 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~---------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i  127 (244)
                      .++.+++++...++++|+.+ .+.+|++  ....         ...... ..... |+.++|  ++++|+++ .++.|++
T Consensus        39 ~~nlLais~~~gll~a~~~~-~l~v~~~--~~l~~~~~~~~~~~~~~~~-~~lp~-V~~l~f--d~~~L~v~-~~~~l~v  110 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGS-KAVVGEL--QLLRDHITSDSTPLTFKWE-KEIPD-VIFVCF--HGDQVLVS-TRNALYS  110 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETT-EEEEEEH--HHHHHHHHSSSCCCCCSEE-EECTT-EEEEEE--ETTEEEEE-ESSEEEE
T ss_pred             cccEEEEcCCCCEEEEeCCC-EEEEEEh--hHhhhhhccccccccceEE-eeCCC-eeEEEE--CCCEEEEE-cCCcEEE
Confidence            68899999999999999887 4666983  2211         222222 23566 999999  88999998 8899999


Q ss_pred             EEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCC
Q psy11529        128 CYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSS  207 (244)
Q Consensus       128 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (244)
                      ||+++...    ......+...+.++.+.+..  +++++.||.|.+||+                  ..+....    + 
T Consensus       111 ~dv~sl~~----~~~~~~~~~~v~~i~~~~p~--~av~~~dG~L~v~dl------------------~~~~~~~----~-  161 (388)
T 1xip_A          111 LDLEELSE----FRTVTSFEKPVFQLKNVNNT--LVILNSVNDLSALDL------------------RTKSTKQ----L-  161 (388)
T ss_dssp             EESSSTTC----EEEEEECSSCEEEEEECSSE--EEEEETTSEEEEEET------------------TTCCEEE----E-
T ss_pred             EEchhhhc----cCccceeecceeeEEecCCC--EEEEECCCCEEEEEc------------------cCCcccc----c-
Confidence            99988764    22223445567777776543  888899999999999                  4444432    2 


Q ss_pred             CCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCC
Q psy11529        208 SGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQ  241 (244)
Q Consensus       208 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~  241 (244)
                        ...|++++|||+|  ++.|..||++++|+.+.
T Consensus       162 --~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~  191 (388)
T 1xip_A          162 --AQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRN  191 (388)
T ss_dssp             --EESEEEEEECSSE--EEEEETTSCEEEEEEET
T ss_pred             --cCCceEEEEcCCc--eEEEEcCCcEEEEcCCC
Confidence              5679999999999  67788999999997654

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.55  E-value=4.1e-11  Score=89.73  Aligned_cols=190  Identities=12%  Similarity=0.015  Sum_probs=123.4

Q ss_pred             CCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeecc--CCCceEEEEeCCCCCeEEEEeCC----ccEEEE
Q psy11529          9 INPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDG--HDLKVTGIDWAPNTNRIVTCSAD----RNAYVW   82 (244)
Q Consensus         9 ~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d----~~i~iw   82 (244)
                      ...+.+++|+|+|+++++. . ..|.+|+..+  +....+.....  ....++.++++|+|+++++...+    +...||
T Consensus        89 ~~~v~~i~~~~dg~l~v~~-~-~gl~~~d~~~--g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~  164 (326)
T 2ghs_A           89 PFMGSALAKISDSKQLIAS-D-DGLFLRDTAT--GVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIY  164 (326)
T ss_dssp             SSCEEEEEEEETTEEEEEE-T-TEEEEEETTT--CCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEE
T ss_pred             CCcceEEEEeCCCeEEEEE-C-CCEEEEECCC--CcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEE
Confidence            4678999999999877765 3 4589999876  43332222211  12468899999999876654321    345666


Q ss_pred             eeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEee-CCCeEEEEEee--cC-CCce-EEEeeecCCCCceeEEEecC
Q psy11529         83 TQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGS-GARLISVCYFE--SE-NDWW-VAKHIKKPIKSTITCLDWHP  157 (244)
Q Consensus        83 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~i~d~~--~~-~~~~-~~~~~~~~~~~~v~~~~~~p  157 (244)
                      .++  +++...   ..........++|+|+++.++.+. .++.|.+|+++  ++ .... ............+..+++++
T Consensus       165 ~~~--~g~~~~---~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~  239 (326)
T 2ghs_A          165 HVA--KGKVTK---LFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDA  239 (326)
T ss_dssp             EEE--TTEEEE---EEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECT
T ss_pred             EEe--CCcEEE---eeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECC
Confidence            642  343221   122334567899999998776654 56889999986  33 2100 11111222335678899999


Q ss_pred             CCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEe-cCCCEEEEee
Q psy11529        158 NNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFS-KDGNKLCWTS  229 (244)
Q Consensus       158 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~  229 (244)
                      +|++.++...++.|.+||.                   .++.+..+..+   ...+++++|+ ++++.|+.++
T Consensus       240 ~G~lwva~~~~~~v~~~d~-------------------~g~~~~~i~~~---~~~~~~~af~g~d~~~L~vt~  290 (326)
T 2ghs_A          240 EGHIWNARWGEGAVDRYDT-------------------DGNHIARYEVP---GKQTTCPAFIGPDASRLLVTS  290 (326)
T ss_dssp             TSCEEEEEETTTEEEEECT-------------------TCCEEEEEECS---CSBEEEEEEESTTSCEEEEEE
T ss_pred             CCCEEEEEeCCCEEEEECC-------------------CCCEEEEEECC---CCCcEEEEEecCCCCEEEEEe
Confidence            9988777767788999985                   35566666665   6679999998 8887665444

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.54  E-value=1.7e-12  Score=99.68  Aligned_cols=206  Identities=12%  Similarity=0.022  Sum_probs=131.1

Q ss_pred             CCCceEEEEEcCCCCeEEEec----------CCCeEEEeeeccCCCcceeeeeeccC-------CCceEEEEeCCCCCeE
Q psy11529          8 GINPVTTHAWNNTRQQLAFTP----------NNQEVHLYQYEKAANDWSQLDVLDGH-------DLKVTGIDWAPNTNRI   70 (244)
Q Consensus         8 ~~~~v~~~~~~~~~~~l~~~~----------~d~~v~v~~~~~~~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~l   70 (244)
                      ...+  .++++|||++++++.          .++.|.++|..+  .  +.+..+.-.       ......+.|+|||+++
T Consensus       118 G~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t--~--~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~l  191 (426)
T 3c75_H          118 GFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVT--F--LPIADIELPDAPRFLVGTYQWMNALTPDNKNL  191 (426)
T ss_dssp             CSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTT--C--CEEEEEEETTCCCCCBSCCGGGSEECTTSSEE
T ss_pred             CCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCC--C--cEEEEEECCCccccccCCCcceEEEcCCCCEE
Confidence            3455  899999999888775          367899999977  4  444444311       1234578999999999


Q ss_pred             EEEeC--CccEEEEeeeCCCCCceeeEEEecc-----CcceEEE------------------------------------
Q psy11529         71 VTCSA--DRNAYVWTQNNDDKKWKPTLVLLRI-----NRAATCV------------------------------------  107 (244)
Q Consensus        71 ~~~~~--d~~i~iwd~~~~~~~~~~~~~~~~~-----~~~v~~~------------------------------------  107 (244)
                      +.+..  ++.|.+.|  ..+++....+...+.     .+.-..+                                    
T Consensus       192 yV~n~~~~~~VsVID--~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~  269 (426)
T 3c75_H          192 LFYQFSPAPAVGVVD--LEGKTFDRMLDVPDCYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINH  269 (426)
T ss_dssp             EEEECSSSCEEEEEE--TTTTEEEEEEECCSEEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSC
T ss_pred             EEEecCCCCeEEEEE--CCCCeEEEEEEcCCceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeE
Confidence            98864  57899999  777765443332110     0000012                                    


Q ss_pred             -EECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeec-----C---CCCceeEEEecCCCCEEEEeeC----------C
Q psy11529        108 -KWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKK-----P---IKSTITCLDWHPNNHLLGCGST----------D  168 (244)
Q Consensus       108 -~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~-----~---~~~~v~~~~~~p~~~~l~~~~~----------d  168 (244)
                       .|.+++..++..+..+.+.+.|...............     .   .......++++|+++.+++...          .
T Consensus       270 ~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s  349 (426)
T 3c75_H          270 PAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAAS  349 (426)
T ss_dssp             CEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCE
T ss_pred             eeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCC
Confidence             2344444444445556666666654331000000000     0   0112223789999887666542          3


Q ss_pred             CeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCC-EEEEee-CCCcEEEEeCCCCC
Q psy11529        169 FKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGN-KLCWTS-HDGSINVRMSQQVL  243 (244)
Q Consensus       169 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~-~dg~i~vwd~~~~~  243 (244)
                      +.|.++|+                  .+.+.+..+..    ......++|+|||+ ++++.. .++.|.++|+.+..
T Consensus       350 ~~VsVID~------------------~T~kvv~~I~v----g~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~k  404 (426)
T 3c75_H          350 RFVVVLNA------------------ETGERINKIEL----GHEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGE  404 (426)
T ss_dssp             EEEEEEET------------------TTCCEEEEEEE----EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCC
T ss_pred             CEEEEEEC------------------CCCeEEEEEEC----CCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCC
Confidence            57999999                  77888888876    45688999999999 888887 59999999998753

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.54  E-value=1.1e-11  Score=91.98  Aligned_cols=198  Identities=10%  Similarity=-0.004  Sum_probs=125.0

Q ss_pred             CCCceEEEEEcCCCC-eEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeC
Q psy11529          8 GINPVTTHAWNNTRQ-QLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNN   86 (244)
Q Consensus         8 ~~~~v~~~~~~~~~~-~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~   86 (244)
                      +........|+|+|+ ++++...++.|..|+..+     + ...+..+...+..++++++|+++++...++.|.+|+  .
T Consensus        43 ~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~g-----~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~--~  114 (305)
T 3dr2_A           43 QATWSEGPAWWEAQRTLVWSDLVGRRVLGWREDG-----T-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSD--A  114 (305)
T ss_dssp             CCSSEEEEEEEGGGTEEEEEETTTTEEEEEETTS-----C-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEEC--T
T ss_pred             CCcCccCCeEeCCCCEEEEEECCCCEEEEEeCCC-----C-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEEC--C
Confidence            345667899999998 566667788999998743     2 234444667789999999999766655567899999  5


Q ss_pred             CCCCceeeEEEec--cCcceEEEEECCCCCeEEE----eeC-------------CCeEEEEEeecCCCceEEEeeecCCC
Q psy11529         87 DDKKWKPTLVLLR--INRAATCVKWSPLENKFAA----GSG-------------ARLISVCYFESENDWWVAKHIKKPIK  147 (244)
Q Consensus        87 ~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~----~~~-------------d~~i~i~d~~~~~~~~~~~~~~~~~~  147 (244)
                      . ++.........  ....++.++++|+|+.+++    +..             .+.|..+|.++++.    ....  ..
T Consensus       115 ~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~----~~~~--~~  187 (305)
T 3dr2_A          115 D-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPL----QRMA--DL  187 (305)
T ss_dssp             T-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCC----EEEE--EE
T ss_pred             C-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcE----EEEe--cC
Confidence            4 54322211111  1234678999999998775    332             23455555444443    1111  22


Q ss_pred             CceeEEEecCCCCEEEEeeCC------CeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecC
Q psy11529        148 STITCLDWHPNNHLLGCGSTD------FKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKD  221 (244)
Q Consensus       148 ~~v~~~~~~p~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  221 (244)
                      .....++|+||++.|+.+...      +.|.+|++....+             ...+.....  .   ......++++++
T Consensus       188 ~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l-------------~~~~~~~~~--~---~~~pdgi~~d~~  249 (305)
T 3dr2_A          188 DHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGAL-------------HDRRHFASV--P---DGLPDGFCVDRG  249 (305)
T ss_dssp             SSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEE-------------EEEEEEECC--S---SSCCCSEEECTT
T ss_pred             CCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCc-------------cCCeEEEEC--C---CCCCCeEEECCC
Confidence            456789999999977777655      6899999842110             001111111  1   334567889999


Q ss_pred             CCEEEEeeCCCcEEEEeCC
Q psy11529        222 GNKLCWTSHDGSINVRMSQ  240 (244)
Q Consensus       222 ~~~l~~~~~dg~i~vwd~~  240 (244)
                      |++.++. .+ .|.+|+.+
T Consensus       250 G~lwv~~-~~-gv~~~~~~  266 (305)
T 3dr2_A          250 GWLWSSS-GT-GVCVFDSD  266 (305)
T ss_dssp             SCEEECC-SS-EEEEECTT
T ss_pred             CCEEEec-CC-cEEEECCC
Confidence            9855444 44 48888864

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.53  E-value=2.9e-11  Score=92.08  Aligned_cols=196  Identities=11%  Similarity=-0.015  Sum_probs=127.7

Q ss_pred             EEEEEcCCCCeEEEecC--CCeEEEeeeccCCCcceeeee-eccCCCceEEEEeCCCC-CeEEEEeCCccEEEEeeeCCC
Q psy11529         13 TTHAWNNTRQQLAFTPN--NQEVHLYQYEKAANDWSQLDV-LDGHDLKVTGIDWAPNT-NRIVTCSADRNAYVWTQNNDD   88 (244)
Q Consensus        13 ~~~~~~~~~~~l~~~~~--d~~v~v~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~   88 (244)
                      ..++|+|||++|+++..  ++.|.++| .+  +  +.... +. ...   ++.+.|++ +.+++.+.||.+.++|  . +
T Consensus       128 ~~~~~spDG~~l~v~n~~~~~~v~viD-~t--~--~~~~~~i~-~~~---~~~~~~~~~~~~~~~~~dg~~~~vd--~-~  195 (373)
T 2mad_H          128 WMNANTPNNADLLFFQFAAGPAVGLVV-QG--G--SSDDQLLS-SPT---CYHIHPGAPSTFYLLCAQGGLAKTD--H-A  195 (373)
T ss_pred             cceEECCCCCEEEEEecCCCCeEEEEE-CC--C--CEEeEEcC-CCc---eEEEEeCCCceEEEEcCCCCEEEEE--C-C
Confidence            47899999999998864  57899999 77  4  44444 43 222   24455644 4556677899999999  6 6


Q ss_pred             CCceeeEEE---eccCcc-eEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeec-----C---CCCceeEEEec
Q psy11529         89 KKWKPTLVL---LRINRA-ATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKK-----P---IKSTITCLDWH  156 (244)
Q Consensus        89 ~~~~~~~~~---~~~~~~-v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~-----~---~~~~v~~~~~~  156 (244)
                      ++.......   ...... .....+.+++..++..+..+.+.+.|+..............     .   .......+.++
T Consensus       196 g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s  275 (373)
T 2mad_H          196 GGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYL  275 (373)
T ss_pred             CcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEEC
Confidence            653322110   011111 22345667666655555778899988876532111100000     0   11234457899


Q ss_pred             CCCCEEEEeeC----------CCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCC-EE
Q psy11529        157 PNNHLLGCGST----------DFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGN-KL  225 (244)
Q Consensus       157 p~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l  225 (244)
                      |+++.++++..          .+.|.++|+                  .+.+.+..+..    ......++|+|||+ ++
T Consensus       276 ~d~~~lyV~~~~~~~~~~~~~~~~V~VID~------------------~t~~vv~~i~~----g~~p~~i~~s~Dg~~~l  333 (373)
T 2mad_H          276 KSSDGIYLLTSEQSAWKLHAAAKEVTSVTG------------------LVGQTSSQISL----GHDVDAISVAQDGGPDL  333 (373)
T ss_pred             CCCCEEEEEeccCCcccccCCCCeEEEEEC------------------CCCEEEEEEEC----CCCcCeEEECCCCCeEE
Confidence            99987777543          357999998                  67788888865    55689999999999 77


Q ss_pred             EEee-CCCcEEEEeCCCC
Q psy11529        226 CWTS-HDGSINVRMSQQV  242 (244)
Q Consensus       226 ~~~~-~dg~i~vwd~~~~  242 (244)
                      +++. .++.|.++|+.+.
T Consensus       334 ~v~~~~~~~V~ViD~~t~  351 (373)
T 2mad_H          334 YALSAGTEVLHIYDAGAG  351 (373)
T ss_pred             EEEcCCCCeEEEEECCCC
Confidence            7776 5899999999875

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.50  E-value=1.1e-11  Score=93.40  Aligned_cols=221  Identities=10%  Similarity=0.005  Sum_probs=130.3

Q ss_pred             eEEeCCCceEEEEEcCCCCeEEEec--CCCeEEEeeeccCCCcceee----eeeccCCCceEEEEeCCCCCeEEEEeC--
Q psy11529          4 VYSFGINPVTTHAWNNTRQQLAFTP--NNQEVHLYQYEKAANDWSQL----DVLDGHDLKVTGIDWAPNTNRIVTCSA--   75 (244)
Q Consensus         4 ~~~~~~~~v~~~~~~~~~~~l~~~~--~d~~v~v~~~~~~~~~~~~~----~~~~~~~~~v~~~~~~~~~~~l~~~~~--   75 (244)
                      +.++. .....++++|+|+.+++..  .++.++||.+.+  +.....    .....+-..+.+++++++++++++-..  
T Consensus        12 v~~~~-~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~--g~~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~   88 (343)
T 2qe8_A           12 VAELS-LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQ--DGLIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQ   88 (343)
T ss_dssp             EEEES-SCEEEEEECTTSCEEEEECGGGCCSCSEEEEET--TEEEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHH
T ss_pred             EEEcC-CCcceEEECCCCCEEEEeCCCCCCceEEEEECC--CCeecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCC
Confidence            44444 6789999999999988853  234355665543  311111    111234567899999999876665433  


Q ss_pred             ---CccEEEEeeeCCCCCceeeEEEec----cCcceEEEEECCCCCeE-EEee---CCCeEEEEEeecCCCceEEEe--e
Q psy11529         76 ---DRNAYVWTQNNDDKKWKPTLVLLR----INRAATCVKWSPLENKF-AAGS---GARLISVCYFESENDWWVAKH--I  142 (244)
Q Consensus        76 ---d~~i~iwd~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l-~~~~---~d~~i~i~d~~~~~~~~~~~~--~  142 (244)
                         ++.|.+||  ..+++....+.+..    ....+..++++|++..+ ++-.   .++.|.+||+.+++.......  .
T Consensus        89 ~~~~~~i~~~d--~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~  166 (343)
T 2qe8_A           89 SKSVPKLVAWD--TLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPG  166 (343)
T ss_dssp             HTSCCEEEEEE--TTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTT
T ss_pred             cCCCCeEEEEE--CCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCc
Confidence               57899999  77776544443321    12356899999865454 4443   578899999876643111000  0


Q ss_pred             e---------cC--------------CCCceeEEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccce
Q psy11529        143 K---------KP--------------IKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNC  199 (244)
Q Consensus       143 ~---------~~--------------~~~~v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~  199 (244)
                      .         .+              ....+..++|+|+|+.|+++...+. ++|.+.........   . .. ......
T Consensus       167 ~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~-~l~~~~~~~~~~~~---~-~~-~~~~~~  240 (343)
T 2qe8_A          167 IAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHST-SMYRIKSADLSNLQ---L-TD-AELGSK  240 (343)
T ss_dssp             TSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCS-EEEEEEHHHHTCTT---C-CH-HHHHTT
T ss_pred             ccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCC-eEEEEEHHHhcCCC---C-Ch-hhhhcc
Confidence            0         00              0123688999999998888877663 44544321111000   0 00 000000


Q ss_pred             eEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeC
Q psy11529        200 LVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMS  239 (244)
Q Consensus       200 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~  239 (244)
                      +... ++   ......++++++|.++++...++.|.+||.
T Consensus       241 ~~~~-g~---~g~pdgia~d~~G~l~va~~~~~~V~~~d~  276 (343)
T 2qe8_A          241 IERY-SE---KPICDGISIDKDHNIYVGDLAHSAIGVITS  276 (343)
T ss_dssp             CEEE-EE---CCSCSCEEECTTCCEEEEEGGGTEEEEEET
T ss_pred             eEec-cc---CCCCceEEECCCCCEEEEccCCCeEEEEEC
Confidence            1111 22   334567899999999988888999999997

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.46  E-value=4.6e-11  Score=92.13  Aligned_cols=199  Identities=7%  Similarity=0.018  Sum_probs=125.3

Q ss_pred             EEEcCCCCeEEEecCCC--eEEEeeeccCCCcceeeeee---cc-CCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCCC
Q psy11529         15 HAWNNTRQQLAFTPNNQ--EVHLYQYEKAANDWSQLDVL---DG-HDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDD   88 (244)
Q Consensus        15 ~~~~~~~~~l~~~~~d~--~v~v~~~~~~~~~~~~~~~~---~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~   88 (244)
                      ++|+|+++.|+++..++  .|.+++...  +  .....+   .. ....+.+++++|++..|+.+..++.|+.||  ..+
T Consensus       176 ia~~~~g~~l~~~d~~~~~~I~~~d~~~--~--~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d--~~~  249 (409)
T 3hrp_A          176 PAVTKDKQRVYSIGWEGTHTVYVYMKAS--G--WAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFN--VKT  249 (409)
T ss_dssp             CEECTTSSEEEEEBSSTTCEEEEEEGGG--T--TCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEE--TTT
T ss_pred             eeEecCCCcEEEEecCCCceEEEEEcCC--C--ceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEE--CCC
Confidence            88999999888887655  788888765  2  112222   12 446678899999555555566788899999  666


Q ss_pred             CCceeeEE--EeccCcce-E-EEEECCC-CCeEEEeeCCCeEEEEEeecCCCceEEEeee--cC---------CCCceeE
Q psy11529         89 KKWKPTLV--LLRINRAA-T-CVKWSPL-ENKFAAGSGARLISVCYFESENDWWVAKHIK--KP---------IKSTITC  152 (244)
Q Consensus        89 ~~~~~~~~--~~~~~~~v-~-~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~--~~---------~~~~v~~  152 (244)
                      +.......  ..+..... . .++|+|+ +.++++-..++.|+.|+.+....  ...-..  .+         .-.....
T Consensus       250 ~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~~~--~~~g~~~~~g~~dg~~~~~~~~~P~g  327 (409)
T 3hrp_A          250 QEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGECE--WFCGSATQKTVQDGLREEALFAQPNG  327 (409)
T ss_dssp             CCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCCEE--EEEECTTCCSCBCEEGGGCBCSSEEE
T ss_pred             CCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCCEE--EEEeCCCCCCcCCCcccccEeCCCeE
Confidence            54221100  11111222 3 9999996 55555555678888887654311  110000  00         0134789


Q ss_pred             EEecCCCCEEEEee-CCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCC------------CCCCCCeEEEEEe
Q psy11529        153 LDWHPNNHLLGCGS-TDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNS------------SSGGGWIHSVAFS  219 (244)
Q Consensus       153 ~~~~p~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~v~~~~~s  219 (244)
                      ++++|+|+++++-. .+++|+.|++..                  +. +..+.++            ...-.....++++
T Consensus       328 ia~d~dG~lyvad~~~~~~I~~~~~~~------------------G~-v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd  388 (409)
T 3hrp_A          328 MTVDEDGNFYIVDGFKGYCLRKLDILD------------------GY-VSTVAGQVDVASQIDGTPLEATFNYPYDICYD  388 (409)
T ss_dssp             EEECTTCCEEEEETTTTCEEEEEETTT------------------TE-EEEEEECTTCBSCCCBSTTTCCBSSEEEEEEC
T ss_pred             EEEeCCCCEEEEeCCCCCEEEEEECCC------------------CE-EEEEeCCCCCCCcCCCChhceEeCCceEEEEc
Confidence            99999999777777 788999999622                  22 1111111            0002457899999


Q ss_pred             cCCCEEEEeeCCCcEEEEeCC
Q psy11529        220 KDGNKLCWTSHDGSINVRMSQ  240 (244)
Q Consensus       220 ~~~~~l~~~~~dg~i~vwd~~  240 (244)
                      ++|.++++-..++.|+.++++
T Consensus       389 ~~g~lyVad~~n~~Ir~i~~e  409 (409)
T 3hrp_A          389 GEGGYWIAEAWGKAIRKYAVE  409 (409)
T ss_dssp             SSSEEEEEESTTCEEEEEEEC
T ss_pred             CCCCEEEEECCCCeEEEEEeC
Confidence            999888888888899988763

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.42  E-value=1.5e-11  Score=93.02  Aligned_cols=200  Identities=10%  Similarity=-0.018  Sum_probs=120.7

Q ss_pred             CCCceEEEEEcCCCCeEEEec----------CCCeEEEeeeccCCCcceeeeeeccC-------CCceEEEEeCCCCCeE
Q psy11529          8 GINPVTTHAWNNTRQQLAFTP----------NNQEVHLYQYEKAANDWSQLDVLDGH-------DLKVTGIDWAPNTNRI   70 (244)
Q Consensus         8 ~~~~v~~~~~~~~~~~l~~~~----------~d~~v~v~~~~~~~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~l   70 (244)
                      ...+  .+.++||+++++++.          .++.|.+||+.+  .  +.+.++.-.       ......++++|||+++
T Consensus        65 G~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T--~--~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~l  138 (368)
T 1mda_H           65 AFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVT--F--LPIADIELPDAPRFSVGPRVHIIGNCASSACL  138 (368)
T ss_dssp             CTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTT--C--CEEEEEEETTSCSCCBSCCTTSEEECTTSSCE
T ss_pred             CCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCC--C--CEEEEEECCCccccccCCCcceEEEcCCCCEE
Confidence            3455  799999999888875          368899999987  4  556665432       1234579999999999


Q ss_pred             EEEeC--CccEEE--EeeeCCCCCceeeEEEecc-----CcceEEEEE--------------------------------
Q psy11529         71 VTCSA--DRNAYV--WTQNNDDKKWKPTLVLLRI-----NRAATCVKW--------------------------------  109 (244)
Q Consensus        71 ~~~~~--d~~i~i--wd~~~~~~~~~~~~~~~~~-----~~~v~~~~~--------------------------------  109 (244)
                      +.+..  +..+.+  +|  ..+   ...+...+.     .+.-.-+++                                
T Consensus       139 yVan~~~~~~v~V~~iD--~~t---v~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg  213 (368)
T 1mda_H          139 LFFLFGSSAAAGLSVPG--ASD---DQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCS  213 (368)
T ss_dssp             EEEECSSSCEEEEEETT--TEE---EEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBC
T ss_pred             EEEccCCCCeEEEEEEc--hhh---ceEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCC
Confidence            98864  467888  88  433   111110000     000000111                                


Q ss_pred             -----CCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecC------C---CCceeEEEecCCCCEEEEeeC--------
Q psy11529        110 -----SPLENKFAAGSGARLISVCYFESENDWWVAKHIKKP------I---KSTITCLDWHPNNHLLGCGST--------  167 (244)
Q Consensus       110 -----~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~------~---~~~v~~~~~~p~~~~l~~~~~--------  167 (244)
                           .+++..++..+. +.+.+.|....... ........      .   ......+.++|+++.++++..        
T Consensus       214 ~~P~~~~~~~~~~~vs~-~~V~viD~~~~~~~-v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~  291 (368)
T 1mda_H          214 SQAAQANYPGMLVWAVA-SSILQGDIPAAGAT-MKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLA  291 (368)
T ss_dssp             SCCEEETTTTEEEECBS-SCCEEEECCSSCCE-EECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTS
T ss_pred             CCccccccCCEEEEEcC-CEEEEEECCCCcce-EEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccc
Confidence                 222233333333 55666665443220 00000000      0   011222789999987776543        


Q ss_pred             -CCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCC-EEEEee-CCCcEEEEeCCCC
Q psy11529        168 -DFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGN-KLCWTS-HDGSINVRMSQQV  242 (244)
Q Consensus       168 -dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~-~dg~i~vwd~~~~  242 (244)
                       ++.+.++|+                  .+.+.+..+..    ......++|+|||+ ++++.. .++.|.++|+.+.
T Consensus       292 ~~~~~~ViD~------------------~t~~vv~~i~v----g~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~  347 (368)
T 1mda_H          292 AAENTSSVTA------------------SVGQTSGPISN----GHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASD  347 (368)
T ss_dssp             CEEEEEEEES------------------SSCCEEECCEE----EEEECEEEECCSSSCEEEEEETTTTEEEEEESSSC
T ss_pred             cCCCEEEEEC------------------CCCeEEEEEEC----CCCcceEEECCCCCEEEEEccCCCCeEEEEECCCC
Confidence             235669999                  67777777766    44688999999998 556666 5999999999875

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.42  E-value=2.4e-10  Score=87.39  Aligned_cols=194  Identities=14%  Similarity=0.095  Sum_probs=123.8

Q ss_pred             eEEEEEcCCCCeEEEecCC------CeEEEeeeccCCCcceeeeeecc--CC-CceEEEEeCCCCCeEEEEe--------
Q psy11529         12 VTTHAWNNTRQQLAFTPNN------QEVHLYQYEKAANDWSQLDVLDG--HD-LKVTGIDWAPNTNRIVTCS--------   74 (244)
Q Consensus        12 v~~~~~~~~~~~l~~~~~d------~~v~v~~~~~~~~~~~~~~~~~~--~~-~~v~~~~~~~~~~~l~~~~--------   74 (244)
                      -..+..+|+| .++++..+      +.|.++|..+  .  +.+.++..  .. ..-..+.|+|+++.+++..        
T Consensus       140 Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T--~--~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~  214 (462)
T 2ece_A          140 LHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYS--F--EPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIE  214 (462)
T ss_dssp             EEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTT--C--CEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHT
T ss_pred             ccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCC--C--eEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccc
Confidence            3456788999 66665444      7899999876  3  55555542  22 2233578899999888874        


Q ss_pred             -----------CCccEEEEeeeCCCCCceeeEEEeccCcceEEEEE--CCCCCeEEEee------CCCeEEEEEeecCCC
Q psy11529         75 -----------ADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKW--SPLENKFAAGS------GARLISVCYFESEND  135 (244)
Q Consensus        75 -----------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~------~d~~i~i~d~~~~~~  135 (244)
                                 ...+|.+||  +.+++....+...........+.|  +|+++++++++      .+++|.+|..+.+. 
T Consensus       215 ~g~~~~~~~~~~~d~V~v~D--~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~-  291 (462)
T 2ece_A          215 DGLKLEHLKDRYGNRIHFWD--LRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGK-  291 (462)
T ss_dssp             TCCCTTTHHHHSCCEEEEEE--TTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTE-
T ss_pred             cccchhhhhhccCCEEEEEE--CCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCc-
Confidence                       368999999  777654444433212234556656  99999977766      56788888877532 


Q ss_pred             ceEEEeee--cC----------------CCCceeEEEecCCCCEEEEeeC-CCeEEEEEeeecccccCCCCCCCCccccc
Q psy11529        136 WWVAKHIK--KP----------------IKSTITCLDWHPNNHLLGCGST-DFKVRVFSAYIKDIESAPQSTNWGSKSTL  196 (244)
Q Consensus       136 ~~~~~~~~--~~----------------~~~~v~~~~~~p~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~  196 (244)
                       +......  ..                .......+.++|||++|+++.. .+.|.+||+...               ..
T Consensus       292 -~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~---------------~~  355 (462)
T 2ece_A          292 -WNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNP---------------FK  355 (462)
T ss_dssp             -EEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSST---------------TS
T ss_pred             -eeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCC---------------CC
Confidence             2111110  00                0245788999999998887765 679999998311               11


Q ss_pred             cceeEEecCC-----------CCCCCCeEEEEEecCCCEEEEee
Q psy11529        197 GNCLVELNNS-----------SSGGGWIHSVAFSKDGNKLCWTS  229 (244)
Q Consensus       197 ~~~~~~~~~~-----------~~~~~~v~~~~~s~~~~~l~~~~  229 (244)
                      .+.+..+...           ......-..++++|||++|+++.
T Consensus       356 ~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          356 PVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             CEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             cEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence            2333333321           00012357899999999988887

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.39  E-value=8.3e-11  Score=88.70  Aligned_cols=199  Identities=8%  Similarity=-0.020  Sum_probs=123.1

Q ss_pred             CCceEEEEEcCCCCeEEEecC-----CCeEEEeeeccCCCcceeeeeecc------CCCceEEEEeCCCCCeE-EEEe--
Q psy11529          9 INPVTTHAWNNTRQQLAFTPN-----NQEVHLYQYEKAANDWSQLDVLDG------HDLKVTGIDWAPNTNRI-VTCS--   74 (244)
Q Consensus         9 ~~~v~~~~~~~~~~~l~~~~~-----d~~v~v~~~~~~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~l-~~~~--   74 (244)
                      ...+.+++++++++++++-..     ++.|.+||+.+  +  +.+..+..      +...+..+++++++..+ ++-.  
T Consensus        66 ~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~t--g--~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~  141 (343)
T 2qe8_A           66 FDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLN--N--QLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAP  141 (343)
T ss_dssp             CSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTT--T--EEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCS
T ss_pred             eeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCC--C--eEEEEEECChhhcccccccceEEEecCCCEEEEEcCcc
Confidence            357899999999987765433     57899999876  4  33443332      22456899999865444 4444  


Q ss_pred             -CCccEEEEeeeCCCCCceeeEE-------------Eec--------------cCcceEEEEECCCCCeEEEeeCCCeEE
Q psy11529         75 -ADRNAYVWTQNNDDKKWKPTLV-------------LLR--------------INRAATCVKWSPLENKFAAGSGARLIS  126 (244)
Q Consensus        75 -~d~~i~iwd~~~~~~~~~~~~~-------------~~~--------------~~~~v~~~~~~~~~~~l~~~~~d~~i~  126 (244)
                       .++.|.+||  ..+++......             ..+              ....+..++|+|+++.|+++...+. +
T Consensus       142 ~~~~~i~v~d--~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~-~  218 (343)
T 2qe8_A          142 DDKAALIRVD--LQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHST-S  218 (343)
T ss_dssp             GGGCEEEEEE--TTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCS-E
T ss_pred             CCCCeEEEEE--CCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCC-e
Confidence             578999999  66554321110             000              0123688999999998888876653 4


Q ss_pred             EEEeecC--C--Cce---EE-EeeecCCCCceeEEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccc
Q psy11529        127 VCYFESE--N--DWW---VA-KHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGN  198 (244)
Q Consensus       127 i~d~~~~--~--~~~---~~-~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~  198 (244)
                      +|.++..  .  ...   .. .....++......++++++|+++++...++.|.+||.                  ..++
T Consensus       219 l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~------------------~~G~  280 (343)
T 2qe8_A          219 MYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITS------------------ADRA  280 (343)
T ss_dssp             EEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEET------------------TTTE
T ss_pred             EEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEEC------------------CCCC
Confidence            4544321  0  000   00 0001112235667999999999998888999999996                  2343


Q ss_pred             eeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcE
Q psy11529        199 CLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSI  234 (244)
Q Consensus       199 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i  234 (244)
                      .........  .....+++|.++++++++.+..+.+
T Consensus       281 ~~~~~~~~~--~~~p~~va~~~~g~l~v~~~~~~~~  314 (343)
T 2qe8_A          281 YKLLVTDEK--LSWTDSFNFGSDGYLYFDCNQLHHS  314 (343)
T ss_dssp             EEEEEECGG--GSCEEEEEECTTSCEEEEECCGGGS
T ss_pred             EEEEEECCc--eecCCeeEECCCCcEEEEeCccccc
Confidence            322222110  3568899999999888777644433

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.36  E-value=1.5e-10  Score=87.55  Aligned_cols=198  Identities=12%  Similarity=-0.005  Sum_probs=126.5

Q ss_pred             EEEEEcCCCCeEEEecC--CCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCCC-C
Q psy11529         13 TTHAWNNTRQQLAFTPN--NQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDD-K   89 (244)
Q Consensus        13 ~~~~~~~~~~~l~~~~~--d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-~   89 (244)
                      ..++|+|||++++++..  ++.|.++|+.+  .  +.+.++.- .+ . ...+....+.+++.+.||++.+.+  +.+ +
T Consensus       140 ~~~a~spDGk~lyVan~~~~~~VsVID~~t--~--~vv~tI~v-~g-~-~~~~P~g~~~~~~~~~DG~~~~v~--~~~~g  210 (386)
T 3sjl_D          140 WMTSLTPDGKTLLFYQFSPAPAVGVVDLEG--K--AFKRMLDV-PD-C-YHIFPTAPDTFFMHCRDGSLAKVA--FGTEG  210 (386)
T ss_dssp             GGEEECTTSSEEEEEECSSSCEEEEEETTT--T--EEEEEEEC-CS-E-EEEEEEETTEEEEEETTSCEEEEE--CCSSS
T ss_pred             ceEEEcCCCCEEEEEEcCCCCeEEEEECCC--C--cEEEEEEC-CC-c-ceeecCCCceeEEECCCCCEEEEE--CCCCC
Confidence            35899999999888753  68999999987  5  56666642 12 1 222322455677788899999888  554 4


Q ss_pred             CceeeEE-Ee-ccCcce-EEEEEC-CCCCeEEEeeCCCeEEEEEeecCCCceEEEee-ec-------CCCCceeEEEecC
Q psy11529         90 KWKPTLV-LL-RINRAA-TCVKWS-PLENKFAAGSGARLISVCYFESENDWWVAKHI-KK-------PIKSTITCLDWHP  157 (244)
Q Consensus        90 ~~~~~~~-~~-~~~~~v-~~~~~~-~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-~~-------~~~~~v~~~~~~p  157 (244)
                      +...... .. .....+ ....|. ++|++++ .+.++.+.+.|............. ..       -.......++++|
T Consensus       211 ~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~  289 (386)
T 3sjl_D          211 TPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHR  289 (386)
T ss_dssp             CCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEET
T ss_pred             eEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECC
Confidence            4321110 00 001122 124553 6675544 556899999998766531110110 00       0123344577899


Q ss_pred             CCCEEEEeeC----------CCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCC-EEE
Q psy11529        158 NNHLLGCGST----------DFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGN-KLC  226 (244)
Q Consensus       158 ~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~  226 (244)
                      +++.++....          ..+|.++|+                  .+.+.+..+..    ...+.++++++|++ +|+
T Consensus       290 ~~~~lyV~~~~~~~~~hk~~~~~V~viD~------------------~t~kv~~~i~v----g~~~~~lavs~D~~~~ly  347 (386)
T 3sjl_D          290 ALDRIYLLVDQRDEWRHKTASRFVVVLDA------------------KTGERLAKFEM----GHEIDSINVSQDEKPLLY  347 (386)
T ss_dssp             TTTEEEEEEEECCTTCTTSCEEEEEEEET------------------TTCCEEEEEEE----EEEECEEEECSSSSCEEE
T ss_pred             CCCeEEEEeccccccccCCCCCEEEEEEC------------------CCCeEEEEEEC----CCCcceEEECCCCCeEEE
Confidence            9987777543          247999998                  77888888876    56788999999997 666


Q ss_pred             Ee-eCCCcEEEEeCCCC
Q psy11529        227 WT-SHDGSINVRMSQQV  242 (244)
Q Consensus       227 ~~-~~dg~i~vwd~~~~  242 (244)
                      +. ..++.|.++|..+.
T Consensus       348 ~tn~~~~~VsViD~~t~  364 (386)
T 3sjl_D          348 ALSTGDKTLYIHDAESG  364 (386)
T ss_dssp             EEETTTTEEEEEETTTC
T ss_pred             EEcCCCCeEEEEECCCC
Confidence            64 45899999999865

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.36  E-value=8.9e-11  Score=96.61  Aligned_cols=199  Identities=11%  Similarity=0.054  Sum_probs=121.4

Q ss_pred             EEEEEcCCCCeEEEecCCC-------------eEEEeeeccCCCcceeeeeecc-CCCceEEEEeCCCCCeEEEEeC---
Q psy11529         13 TTHAWNNTRQQLAFTPNNQ-------------EVHLYQYEKAANDWSQLDVLDG-HDLKVTGIDWAPNTNRIVTCSA---   75 (244)
Q Consensus        13 ~~~~~~~~~~~l~~~~~d~-------------~v~v~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~---   75 (244)
                      ..++|+ ||+.|+.++.+.             .|++|++.++..+-.++..... |.....++.|+|||++|+....   
T Consensus       178 ~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~  256 (693)
T 3iuj_A          178 SGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANST  256 (693)
T ss_dssp             CCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSS
T ss_pred             ccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCC
Confidence            467899 999999887763             4999998662211123333333 4456788999999998865432   


Q ss_pred             -CccEEEEeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeC-C---CeEEEEEeecCCCceEEEeeecCCCCce
Q psy11529         76 -DRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSG-A---RLISVCYFESENDWWVAKHIKKPIKSTI  150 (244)
Q Consensus        76 -d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d---~~i~i~d~~~~~~~~~~~~~~~~~~~~v  150 (244)
                       .+.|.++|  +.++.... ..+..+....... |++++..|+..+. +   +.|..+++.......  .....++...+
T Consensus       257 ~~~~i~~~d--~~~~~~~~-~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~--~~~l~~~~~~~  330 (693)
T 3iuj_A          257 SGNRLYVKD--LSQENAPL-LTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAH--WRDLIPERQQV  330 (693)
T ss_dssp             SCCEEEEEE--TTSTTCCC-EEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGG--CEEEECCCSSC
T ss_pred             CCcEEEEEE--CCCCCCce-EEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccc--cEEEecCCCCE
Confidence             35889999  65553211 2223344444444 6666666655443 2   578888877654200  01223343444


Q ss_pred             eEEEecCCCCEEEEeeC-CC--eEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEE
Q psy11529        151 TCLDWHPNNHLLGCGST-DF--KVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCW  227 (244)
Q Consensus       151 ~~~~~~p~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~  227 (244)
                      .  .|+++++.|+.... ++  .|++||+                  . +.....+....  ...+..+.+++++..|+.
T Consensus       331 ~--~~s~~g~~lv~~~~~~g~~~l~~~d~------------------~-g~~~~~l~~p~--~~~~~~~~~~~d~~~l~~  387 (693)
T 3iuj_A          331 L--TVHSGSGYLFAEYMVDATARVEQFDY------------------E-GKRVREVALPG--LGSVSGFNGKHDDPALYF  387 (693)
T ss_dssp             E--EEEEETTEEEEEEEETTEEEEEEECT------------------T-SCEEEEECCSS--SSEEEECCCCTTCSCEEE
T ss_pred             E--EEEEECCEEEEEEEECCeeEEEEEEC------------------C-CCeeEEeecCC--CceEEeeecCCCCCEEEE
Confidence            4  88999987776654 44  6788876                  2 33344443321  456778888888886665


Q ss_pred             eeCC----CcEEEEeCCC
Q psy11529        228 TSHD----GSINVRMSQQ  241 (244)
Q Consensus       228 ~~~d----g~i~vwd~~~  241 (244)
                      ...+    +.+..||+.+
T Consensus       388 ~~ss~~tP~~l~~~d~~~  405 (693)
T 3iuj_A          388 GFENYAQPPTLYRFEPKS  405 (693)
T ss_dssp             EEECSSSCCEEEEECTTT
T ss_pred             EecCCCCCCEEEEEECCC
Confidence            5444    7899998764

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.35  E-value=5.2e-10  Score=80.38  Aligned_cols=201  Identities=6%  Similarity=-0.065  Sum_probs=126.4

Q ss_pred             ceEEEEEcCCCCeEEEecC--CCeEEEeeeccCCCcceeeeeecc-CCCceEEEEeCCCCCeEEEE-eCCccEEEEeeeC
Q psy11529         11 PVTTHAWNNTRQQLAFTPN--NQEVHLYQYEKAANDWSQLDVLDG-HDLKVTGIDWAPNTNRIVTC-SADRNAYVWTQNN   86 (244)
Q Consensus        11 ~v~~~~~~~~~~~l~~~~~--d~~v~v~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~-~~d~~i~iwd~~~   86 (244)
                      ....++|+|++.++++.+.  ++.|+++|+.+  +  +.+..+.- .......+++.  +..|+.+ -.++.+.++|  .
T Consensus        22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~t--g--~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD--~   93 (266)
T 2iwa_A           22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQT--G--KVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYD--R   93 (266)
T ss_dssp             CEEEEEECSTTEEEEEECSTTTCEEEEEETTT--C--CEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEE--T
T ss_pred             CcccEEEeCCCeEEEECCCCCCCEEEEEECCC--C--CEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEE--C
Confidence            3579999998765555443  57999999987  5  44444431 11222355555  4455444 4588999999  7


Q ss_pred             CCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCC-CCceeEEEecCCCCEEEEe
Q psy11529         87 DDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPI-KSTITCLDWHPNNHLLGCG  165 (244)
Q Consensus        87 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~-~~~v~~~~~~p~~~~l~~~  165 (244)
                      .+.+....+...  ...  ...++++++.++++..++.+.++|..+.+..........+. -..++.+.|. +|...+..
T Consensus        94 ~t~~v~~~i~~g--~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~  168 (266)
T 2iwa_A           94 RTLSNIKNFTHQ--MKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANI  168 (266)
T ss_dssp             TTTEEEEEEECC--SSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEE
T ss_pred             CCCcEEEEEECC--CCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEec
Confidence            777655444322  122  23355578888887788999999887766421111111111 1246678888 67555555


Q ss_pred             eCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCC----------CCCCCeEEEEEecCCC-EEEEeeCCCcE
Q psy11529        166 STDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSS----------SGGGWIHSVAFSKDGN-KLCWTSHDGSI  234 (244)
Q Consensus       166 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~v~~~~~s~~~~-~l~~~~~dg~i  234 (244)
                      ..++.|.+.|.                  .+++.+..+....          ........++|+|+++ +++++...+++
T Consensus       169 ~~~~~V~vID~------------------~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v  230 (266)
T 2iwa_A          169 WQTDCIARISA------------------KDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKL  230 (266)
T ss_dssp             TTSSEEEEEET------------------TTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEE
T ss_pred             CCCCeEEEEEC------------------CCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeE
Confidence            56789999999                  6677766665310          0013568999999987 55566678888


Q ss_pred             EEEeCCCC
Q psy11529        235 NVRMSQQV  242 (244)
Q Consensus       235 ~vwd~~~~  242 (244)
                      .+.++...
T Consensus       231 ~~i~l~~~  238 (266)
T 2iwa_A          231 FEIKLHLV  238 (266)
T ss_dssp             EEEEEEEC
T ss_pred             EEEEEecc
Confidence            88887643

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.35  E-value=5.4e-10  Score=84.55  Aligned_cols=195  Identities=12%  Similarity=0.024  Sum_probs=123.8

Q ss_pred             EEEEcCCCCeEEEecC-----CCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEe----------CCcc
Q psy11529         14 THAWNNTRQQLAFTPN-----NQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCS----------ADRN   78 (244)
Q Consensus        14 ~~~~~~~~~~l~~~~~-----d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~d~~   78 (244)
                      .....|+++.+++...     ++.|.++|..+  .  +.+..+.....+ . ++++|+|++++.+.          .++.
T Consensus        37 ~~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t--~--~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~  110 (386)
T 3sjl_D           37 LEAPAPDARRVYVNDPAHFAAVTQQFVIDGEA--G--RVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDY  110 (386)
T ss_dssp             CCCCCCCTTEEEEEECGGGCSSEEEEEEETTT--T--EEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEE
T ss_pred             eeccCCCCCEEEEEcCcccCCCCEEEEEECCC--C--eEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCE
Confidence            3456789998887754     57999999877  4  666777654555 4 99999999888775          3678


Q ss_pred             EEEEeeeCCCCCceeeEEEec-----cCcceEEEEECCCCCeEEEeeC--CCeEEEEEeecCCCceEEEeeecCCCCcee
Q psy11529         79 AYVWTQNNDDKKWKPTLVLLR-----INRAATCVKWSPLENKFAAGSG--ARLISVCYFESENDWWVAKHIKKPIKSTIT  151 (244)
Q Consensus        79 i~iwd~~~~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~  151 (244)
                      |.+||  ..+.+....+....     .......++|+|||++++++..  ++.|.++|+.+.+.   ......+.   + 
T Consensus       111 VsviD--~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~v---v~tI~v~g---~-  181 (386)
T 3sjl_D          111 VEVFD--PVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAF---KRMLDVPD---C-  181 (386)
T ss_dssp             EEEEC--TTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEE---EEEEECCS---E-
T ss_pred             EEEEE--CCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcE---EEEEECCC---c-
Confidence            99999  78887655554322     1125668999999999998864  68999999988864   22222221   1 


Q ss_pred             EEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCC-CCCCCCeE-EEEEe-cCCCEEEEe
Q psy11529        152 CLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNS-SSGGGWIH-SVAFS-KDGNKLCWT  228 (244)
Q Consensus       152 ~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~-~~~~s-~~~~~l~~~  228 (244)
                      ...+....+.+++.+.||++.+.++...                 ++........ .....++. ...|. ++|++++ .
T Consensus       182 ~~~~P~g~~~~~~~~~DG~~~~v~~~~~-----------------g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-v  243 (386)
T 3sjl_D          182 YHIFPTAPDTFFMHCRDGSLAKVAFGTE-----------------GTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-P  243 (386)
T ss_dssp             EEEEEEETTEEEEEETTSCEEEEECCSS-----------------SCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-E
T ss_pred             ceeecCCCceeEEECCCCCEEEEECCCC-----------------CeEEEeecceeccccccccccceeEcCCCcEEE-E
Confidence            1222223356667777888888887421                 1111100000 00012222 24664 6786555 4


Q ss_pred             eCCCcEEEEeCCC
Q psy11529        229 SHDGSINVRMSQQ  241 (244)
Q Consensus       229 ~~dg~i~vwd~~~  241 (244)
                      +.+|.|.+.|+..
T Consensus       244 s~~g~V~v~d~~~  256 (386)
T 3sjl_D          244 TYTGKIHQIDLSS  256 (386)
T ss_dssp             BTTSEEEEEECTT
T ss_pred             eCCCEEEEEECCC
Confidence            5588999999854

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.34  E-value=2.2e-13  Score=103.69  Aligned_cols=181  Identities=12%  Similarity=0.037  Sum_probs=95.2

Q ss_pred             CCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCCCCCceeeEEEec
Q psy11529         20 TRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLR   99 (244)
Q Consensus        20 ~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~   99 (244)
                      ++..+++++.|+.|+.||..+  +  +.+..+..  +.+.+..+..++..+++++.|+.++.||  ..+++........ 
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~t--G--~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d--~~tG~~~w~~~~~-   78 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRT--G--SIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLG--SKNNEGLTKLPFT-   78 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTT--C--CEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-------CCSEECSCC-
T ss_pred             eCCEEEEEcCCCEEEEEECCC--C--CEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEE--CCCCceeeeeecc-
Confidence            577888999999999999877  5  55555554  4454544556777888888999999999  7777643222111 


Q ss_pred             cCcceE-EEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEeeCCCeEEEEEeee
Q psy11529        100 INRAAT-CVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYI  178 (244)
Q Consensus       100 ~~~~v~-~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~i~i~d~~~  178 (244)
                      ....+. ...+. .+..+++++.++.++.||.++++..|....    + .   ...++|++..+++++.++.|+.||.  
T Consensus        79 ~~~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~----~-~---~~~~~p~~~~v~~~~~dg~v~a~d~--  147 (369)
T 2hz6_A           79 IPELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSS----A-F---ADSLSPSTSLLYLGRTEYTITMYDT--  147 (369)
T ss_dssp             HHHHHTTCSCC------CCCCEEEEEEEEECCC------------------------------EEEEEEEEEEECCCS--
T ss_pred             CccccccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecC----C-C---cccccccCCEEEEEecCCEEEEEEC--
Confidence            011110 11111 345678888899999999998876433221    1 1   2345678888999999999999998  


Q ss_pred             cccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCC---CEEEEeeCCCcEEEEeCCC
Q psy11529        179 KDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDG---NKLCWTSHDGSINVRMSQQ  241 (244)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~---~~l~~~~~dg~i~vwd~~~  241 (244)
                                      .+++.+..+..+   .  ....+++++.   ..+++++.||.|..||.++
T Consensus       148 ----------------~tG~~~W~~~~~---~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~t  192 (369)
T 2hz6_A          148 ----------------KTRELRWNATYF---D--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSES  192 (369)
T ss_dssp             ----------------SSSSCCCEEEEE---E--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTT
T ss_pred             ----------------CCCCEEEeEecc---c--ccCccccCCccccceEEEECCCCEEEEEECCC
Confidence                            445444333221   1  1122233332   4566778899999999865

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.34  E-value=9.4e-10  Score=84.13  Aligned_cols=211  Identities=7%  Similarity=-0.022  Sum_probs=125.7

Q ss_pred             CCCCeEEE-ecCCCeEEEeeeccCCCcceeeeeec------c-CCCceEEEEeCCCCCeEEEEeCC------ccEEEEee
Q psy11529         19 NTRQQLAF-TPNNQEVHLYQYEKAANDWSQLDVLD------G-HDLKVTGIDWAPNTNRIVTCSAD------RNAYVWTQ   84 (244)
Q Consensus        19 ~~~~~l~~-~~~d~~v~v~~~~~~~~~~~~~~~~~------~-~~~~v~~~~~~~~~~~l~~~~~d------~~i~iwd~   84 (244)
                      +++++|++ +..++.|.|+|+...-..++...+++      . ....-..+..+|+| .++++..+      +.+.++| 
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD-  170 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLD-  170 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEEC-
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEE-
Confidence            77877655 55678999999864213345555552      1 11244567889999 66666555      7899999 


Q ss_pred             eCCCCCceeeEEEeccC-cceEEEEECCCCCeEEEee-------------------CCCeEEEEEeecCCCceEEEeeec
Q psy11529         85 NNDDKKWKPTLVLLRIN-RAATCVKWSPLENKFAAGS-------------------GARLISVCYFESENDWWVAKHIKK  144 (244)
Q Consensus        85 ~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~-------------------~d~~i~i~d~~~~~~~~~~~~~~~  144 (244)
                       .++.+.+......... .....+-|+|+++.++++.                   ...+|.+||+.+.+.   ......
T Consensus       171 -~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~---~~tI~v  246 (462)
T 2ece_A          171 -HYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKR---IHSLTL  246 (462)
T ss_dssp             -TTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEE---EEEEES
T ss_pred             -CCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcE---eeEEec
Confidence             7877754444322222 2245688899999888874                   368999999997643   223322


Q ss_pred             C-CCCceeEEEe--cCCCCEEEEee------CCCeEEEEEeeecccccCCCCCCCCccccccceeEEec---CC-CCCCC
Q psy11529        145 P-IKSTITCLDW--HPNNHLLGCGS------TDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELN---NS-SSGGG  211 (244)
Q Consensus       145 ~-~~~~v~~~~~--~p~~~~l~~~~------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~  211 (244)
                      + .......+.|  +|+++++++++      .+++|.+|.............. .    ...+....+.   .. .....
T Consensus       247 g~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vId-i----~~~~v~~~lp~~~~~f~~~~~  321 (462)
T 2ece_A          247 GEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIE-I----PAEPLEGNLPEILKPFKAVPP  321 (462)
T ss_dssp             CTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEE-E----CCEECCSSCCGGGGGGTEECC
T ss_pred             CCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEe-C----CCccccccccccccccccCCC
Confidence            2 2234445545  99999887776      4568887776321110000000 0    0000000000   00 00013


Q ss_pred             CeEEEEEecCCCEEEEeeC-CCcEEEEeCC
Q psy11529        212 WIHSVAFSKDGNKLCWTSH-DGSINVRMSQ  240 (244)
Q Consensus       212 ~v~~~~~s~~~~~l~~~~~-dg~i~vwd~~  240 (244)
                      ....+.+||||++|+++.. .+.|.+||+.
T Consensus       322 ~pa~I~lS~DGrfLYVSnrg~d~VavfdV~  351 (462)
T 2ece_A          322 LVTDIDISLDDKFLYLSLWGIGEVRQYDIS  351 (462)
T ss_dssp             CCCCEEECTTSCEEEEEETTTTEEEEEECS
T ss_pred             ceeEEEECCCCCEEEEEeCCCCEEEEEEec
Confidence            4678999999999887764 6899999985

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.25  E-value=9.9e-08  Score=69.17  Aligned_cols=197  Identities=9%  Similarity=-0.030  Sum_probs=118.4

Q ss_pred             CceEEEEEcCCCCeEEEe-cCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEE-eCCccEEEEeeeCC
Q psy11529         10 NPVTTHAWNNTRQQLAFT-PNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTC-SADRNAYVWTQNND   87 (244)
Q Consensus        10 ~~v~~~~~~~~~~~l~~~-~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~iwd~~~~   87 (244)
                      ..+..++|++++..|..+ ...+.|.+++..+  .  .....+.........+++++++..|+.+ ...+.|.+++  ..
T Consensus        36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g--~--~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~--~~  109 (267)
T 1npe_A           36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHG--G--EPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAK--MD  109 (267)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEESSS--C--CCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEE--TT
T ss_pred             CcEEEEEEecCCCEEEEEECCCCEEEEEecCC--C--CcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEE--cC
Confidence            345789999976655544 4578999999876  3  1222222223467899999976655544 4567899999  54


Q ss_pred             CCCceeeEEEeccCcceEEEEECCCCCeEEEeeC---CCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEE
Q psy11529         88 DKKWKPTLVLLRINRAATCVKWSPLENKFAAGSG---ARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGC  164 (244)
Q Consensus        88 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~  164 (244)
                      ... .... ..........++++|++..|+.+..   .+.|..++++....    .............++++|++..|+.
T Consensus       110 g~~-~~~~-~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~----~~~~~~~~~~P~gia~d~~~~~lyv  183 (267)
T 1npe_A          110 GTQ-RRVL-FDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR----RILAQDNLGLPNGLTFDAFSSQLCW  183 (267)
T ss_dssp             SCS-CEEE-ECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC----EEEECTTCSCEEEEEEETTTTEEEE
T ss_pred             CCC-EEEE-EECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCc----EEEEECCCCCCcEEEEcCCCCEEEE
Confidence            332 1122 1222256789999997666665554   36788877765432    1111122346789999998766555


Q ss_pred             ee-CCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCC
Q psy11529        165 GS-TDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQ  241 (244)
Q Consensus       165 ~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~  241 (244)
                      +. ..+.|.++|+..                  ......+..    ......++.. .+.++++....+.|.++|..+
T Consensus       184 ~d~~~~~I~~~~~~g------------------~~~~~~~~~----~~~P~gi~~d-~~~lyva~~~~~~v~~~d~~~  238 (267)
T 1npe_A          184 VDAGTHRAECLNPAQ------------------PGRRKVLEG----LQYPFAVTSY-GKNLYYTDWKTNSVIAMDLAI  238 (267)
T ss_dssp             EETTTTEEEEEETTE------------------EEEEEEEEC----CCSEEEEEEE-TTEEEEEETTTTEEEEEETTT
T ss_pred             EECCCCEEEEEecCC------------------CceEEEecC----CCCceEEEEe-CCEEEEEECCCCeEEEEeCCC
Confidence            44 567899999731                  122222222    3334566654 333444444567899988764

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=99.23  E-value=3.2e-09  Score=83.92  Aligned_cols=198  Identities=12%  Similarity=-0.017  Sum_probs=125.3

Q ss_pred             CCCeEEEec-CCCeEEEeeeccCCCcceeee--eeccCCCceEEEEe-C-CCCCeEEEEe------------------CC
Q psy11529         20 TRQQLAFTP-NNQEVHLYQYEKAANDWSQLD--VLDGHDLKVTGIDW-A-PNTNRIVTCS------------------AD   76 (244)
Q Consensus        20 ~~~~l~~~~-~d~~v~v~~~~~~~~~~~~~~--~~~~~~~~v~~~~~-~-~~~~~l~~~~------------------~d   76 (244)
                      ||+++.+.. .++.|.+.|+..  .  +...  .+. .......+++ + |++++++.++                  .+
T Consensus       100 DG~~lfVnd~~~~rVavIdl~t--~--~~~~ii~ip-~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~  174 (595)
T 1fwx_A          100 DGRFLFMNDKANTRVARVRCDV--M--KCDAILEIP-NAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYV  174 (595)
T ss_dssp             EEEEEEEEETTTTEEEEEETTT--T--EEEEEEECS-SCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEE
T ss_pred             CCCEEEEEcCCCCEEEEEECCC--c--eEeeEEeCC-CCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccC
Confidence            788776654 466899999987  4  4444  443 2345778887 5 8999988874                  24


Q ss_pred             ccEEEEeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCC---------------------------------
Q psy11529         77 RNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGAR---------------------------------  123 (244)
Q Consensus        77 ~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~---------------------------------  123 (244)
                      +.+.+.|  ..+.+........   +....++++|+|+++++.+.+.                                 
T Consensus       175 ~~vtvID--~~t~~v~~qI~Vg---g~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk  249 (595)
T 1fwx_A          175 NVFTAVD--ADKWEVAWQVLVS---GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGD  249 (595)
T ss_dssp             EEEEEEE--TTTTEEEEEEEES---SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTC
T ss_pred             ceEEEEE--CCCCeEEEEEEeC---CCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCC
Confidence            6788999  6766543333321   2456788999999988887543                                 


Q ss_pred             -----eEEEEEeec--CCCceEEEeeecCCCCceeEEEecCCCCEEEEee-CCCeEEEEEeeecccccCCCCCCCCcccc
Q psy11529        124 -----LISVCYFES--ENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGS-TDFKVRVFSAYIKDIESAPQSTNWGSKST  195 (244)
Q Consensus       124 -----~i~i~d~~~--~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~  195 (244)
                           .|.+.|..+  ++.  .....  +......++.++|||+++++++ .+.+|.++|+...+......      -..
T Consensus       250 ~~~i~~V~VID~~~~~~~~--~~~~I--pvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~------l~~  319 (595)
T 1fwx_A          250 YQELNGVKVVDGRKEASSL--FTRYI--PIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYEN------ADP  319 (595)
T ss_dssp             SEEETTEEEEECSGGGCCS--SEEEE--EEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSC------CCG
T ss_pred             eeEECcEEEEeCcccCCce--eEEEE--ecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccc------cCc
Confidence                 245555554  211  00111  1123456899999999777665 57899999995332100000      001


Q ss_pred             ccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCC
Q psy11529        196 LGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQ  241 (244)
Q Consensus       196 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~  241 (244)
                      ......+...    ......++|+|+|...++.-.|+.|.+||+++
T Consensus       320 ~~~v~~~v~v----G~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~  361 (595)
T 1fwx_A          320 RSAVVAEPEL----GLGPLHTAFDGRGNAYTSLFLDSQVVKWNIED  361 (595)
T ss_dssp             GGGEEECCBC----CSCEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred             ccceEEEcCC----CCCcceEEECCCCeEEEEEecCCcEEEEEhhH
Confidence            1233444443    66789999999994444555799999999865

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.22  E-value=1.6e-08  Score=77.00  Aligned_cols=146  Identities=9%  Similarity=-0.040  Sum_probs=97.4

Q ss_pred             EEEcCCCCeEEEecC--CC---eEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEe----------CCccE
Q psy11529         15 HAWNNTRQQLAFTPN--NQ---EVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCS----------ADRNA   79 (244)
Q Consensus        15 ~~~~~~~~~l~~~~~--d~---~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~d~~i   79 (244)
                      ....|+++++.+...  ..   .|.++|..+  +  +.+..+.....+  .++++|||++++.+.          .++.|
T Consensus        26 ~~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t--~--~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v   99 (373)
T 2mad_H           26 EAPGADGRRSYINLPAHHSAIIQQWVLDAGS--G--SILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYV   99 (373)
T ss_pred             ccCCCCCCEEEEeCCcccCCccEEEEEECCC--C--eEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeE
Confidence            344578887766643  22   889999876  4  556666644444  899999999998875          36789


Q ss_pred             EEEeeeCCCCCceeeEEEecc-----CcceEEEEECCCCCeEEEeeC--CCeEEEEEeecCCCceEEEeeecCCCCceeE
Q psy11529         80 YVWTQNNDDKKWKPTLVLLRI-----NRAATCVKWSPLENKFAAGSG--ARLISVCYFESENDWWVAKHIKKPIKSTITC  152 (244)
Q Consensus        80 ~iwd~~~~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~  152 (244)
                      .+||  ..+.+........+.     ......++|+|+|++|++++.  ++.|.++| .+++.   ... ..+...   +
T Consensus       100 ~viD--~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~---~~~-~i~~~~---~  169 (373)
T 2mad_H          100 EVFD--PVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSS---DDQ-LLSSPT---C  169 (373)
T ss_pred             EEEE--CCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCE---EeE-EcCCCc---e
Confidence            9999  666664443332200     123568999999999998874  57899999 77653   222 011112   2


Q ss_pred             EEecCCC-CEEEEeeCCCeEEEEEe
Q psy11529        153 LDWHPNN-HLLGCGSTDFKVRVFSA  176 (244)
Q Consensus       153 ~~~~p~~-~~l~~~~~dg~i~i~d~  176 (244)
                      +.+.|++ +.+++.+.||.+.++|.
T Consensus       170 ~~~~~~~~~~~~~~~~dg~~~~vd~  194 (373)
T 2mad_H          170 YHIHPGAPSTFYLLCAQGGLAKTDH  194 (373)
T ss_pred             EEEEeCCCceEEEEcCCCCEEEEEC
Confidence            4555655 45566778899999987

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=99.19  E-value=5.7e-08  Score=72.48  Aligned_cols=201  Identities=15%  Similarity=0.065  Sum_probs=119.3

Q ss_pred             ceEEEEEcC-CCCeEEEecCCCeEEEeeeccCCCcceeeeee-cc-CCCceEEEEeCC-CCCeEEEEeC-----------
Q psy11529         11 PVTTHAWNN-TRQQLAFTPNNQEVHLYQYEKAANDWSQLDVL-DG-HDLKVTGIDWAP-NTNRIVTCSA-----------   75 (244)
Q Consensus        11 ~v~~~~~~~-~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~-~~-~~~~v~~~~~~~-~~~~l~~~~~-----------   75 (244)
                      ....+++.+ ++++++ +...+.|..++..+  +..+.+... .+ .....+.+++.+ +|+..++-..           
T Consensus        81 ~p~gi~~~~~~g~l~v-~d~~~~i~~~d~~~--g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~  157 (322)
T 2fp8_A           81 RTYDISYNLQNNQLYI-VDCYYHLSVVGSEG--GHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQI  157 (322)
T ss_dssp             CEEEEEEETTTTEEEE-EETTTEEEEECTTC--EECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHH
T ss_pred             CCceEEEcCCCCcEEE-EECCCCEEEEeCCC--CEEEEecccCCCCcccccceEEEecCCCEEEEECCccccccccccee
Confidence            467899998 665544 43445588888765  211222111 11 113468899999 9987665432           


Q ss_pred             ------CccEEEEeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEe-eCCCeEEEEEeecCCCceEEEeeecCCCC
Q psy11529         76 ------DRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAG-SGARLISVCYFESENDWWVAKHIKKPIKS  148 (244)
Q Consensus        76 ------d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~~  148 (244)
                            ++.|..+|  ..+++.....   ..-.....++++|+++.|+++ ...+.|.+|++....... ...... ..+
T Consensus       158 ~~~~~~~g~v~~~d--~~~~~~~~~~---~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~-~~~~~~-~~g  230 (322)
T 2fp8_A          158 MDTSDKTGRLIKYD--PSTKETTLLL---KELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGT-AEVLVK-IPN  230 (322)
T ss_dssp             HHHTCCCEEEEEEE--TTTTEEEEEE---EEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTC-EEEEEE-CSS
T ss_pred             hcccCCCceEEEEe--CCCCEEEEec---cCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCc-cceEEe-CCC
Confidence                  36788888  6555432211   122445689999999876666 456889999987532100 111111 123


Q ss_pred             ceeEEEecCCCCEEEEeeC----------CCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCC-CCCCeEEEE
Q psy11529        149 TITCLDWHPNNHLLGCGST----------DFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSS-GGGWIHSVA  217 (244)
Q Consensus       149 ~v~~~~~~p~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~  217 (244)
                       ...++++++|++.++...          .+.|..+|.                   .++.+..+..... ....++.++
T Consensus       231 -P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~-------------------~G~~~~~~~~~~g~~~~~~~~~~  290 (322)
T 2fp8_A          231 -PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDE-------------------FGNILEVIPLPPPFAGEHFEQIQ  290 (322)
T ss_dssp             -EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECT-------------------TSCEEEEEECCTTTTTSCCCEEE
T ss_pred             -CCCeEECCCCCEEEEecCcccccccCCCccEEEEECC-------------------CCCEEEEEECCCCCccccceEEE
Confidence             788999999987666544          356777774                   3555555544310 013466676


Q ss_pred             EecCCCEEEEeeCCCcEEEEeCCCC
Q psy11529        218 FSKDGNKLCWTSHDGSINVRMSQQV  242 (244)
Q Consensus       218 ~s~~~~~l~~~~~dg~i~vwd~~~~  242 (244)
                      + .+++++++....+.|..+++...
T Consensus       291 ~-~~g~L~v~~~~~~~i~~~~~~~~  314 (322)
T 2fp8_A          291 E-HDGLLYIGTLFHGSVGILVYDKK  314 (322)
T ss_dssp             E-ETTEEEEECSSCSEEEEEEC---
T ss_pred             E-eCCEEEEeecCCCceEEEecccc
Confidence            6 46776666667889999998754

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=99.18  E-value=3.1e-08  Score=70.52  Aligned_cols=185  Identities=12%  Similarity=0.105  Sum_probs=114.5

Q ss_pred             eEEEEEcCCCCeEEEecCCC--eEEEeeeccCCCcceeeeeeccCCCce--EEEEeCCCCCeEEEE-eCCccEEEEeeeC
Q psy11529         12 VTTHAWNNTRQQLAFTPNNQ--EVHLYQYEKAANDWSQLDVLDGHDLKV--TGIDWAPNTNRIVTC-SADRNAYVWTQNN   86 (244)
Q Consensus        12 v~~~~~~~~~~~l~~~~~d~--~v~v~~~~~~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~l~~~-~~d~~i~iwd~~~   86 (244)
                      ...+.|+ ++.++.+++.+|  .|+++|+.+  +  +.+..+.- ....  ..++..  +..|... -.++.+.+||  .
T Consensus        45 tqGL~~~-~~~LyestG~~g~S~v~~vD~~T--g--kv~~~~~l-~~~~FgeGit~~--g~~ly~ltw~~~~v~v~D--~  114 (262)
T 3nol_A           45 TEGFFYR-NGYFYESTGLNGRSSIRKVDIES--G--KTLQQIEL-GKRYFGEGISDW--KDKIVGLTWKNGLGFVWN--I  114 (262)
T ss_dssp             EEEEEEE-TTEEEEEEEETTEEEEEEECTTT--C--CEEEEEEC-CTTCCEEEEEEE--TTEEEEEESSSSEEEEEE--T
T ss_pred             cceEEEE-CCEEEEECCCCCCceEEEEECCC--C--cEEEEEec-CCccceeEEEEe--CCEEEEEEeeCCEEEEEE--C
Confidence            4678888 676666666655  899999987  5  44444442 2223  234443  4455544 4588999999  7


Q ss_pred             CCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCC-CceeEEEecCCCCEEEEe
Q psy11529         87 DDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIK-STITCLDWHPNNHLLGCG  165 (244)
Q Consensus        87 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~-~~v~~~~~~p~~~~l~~~  165 (244)
                      .+.+....+...   ..-..++  ++++.|+.+..++.|.++|..+.+..........+.. ..++.+.|. +|+..+..
T Consensus       115 ~t~~~~~ti~~~---~eG~glt--~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~  188 (262)
T 3nol_A          115 RNLRQVRSFNYD---GEGWGLT--HNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANV  188 (262)
T ss_dssp             TTCCEEEEEECS---SCCCCEE--ECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEE
T ss_pred             ccCcEEEEEECC---CCceEEe--cCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEE
Confidence            888765555432   2223333  5677787777788899988887765222221111111 334567776 67666555


Q ss_pred             eCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCC---------CCCCCeEEEEEecCCCEEEEeeC
Q psy11529        166 STDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSS---------SGGGWIHSVAFSKDGNKLCWTSH  230 (244)
Q Consensus       166 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~v~~~~~s~~~~~l~~~~~  230 (244)
                      -.+..|.+.|.                  .+++.+..+....         ......+.++|+|+++.|+..+.
T Consensus       189 w~~~~I~vIDp------------------~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK  244 (262)
T 3nol_A          189 WQTNKIVRIDP------------------ETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK  244 (262)
T ss_dssp             TTSSEEEEECT------------------TTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred             ccCCeEEEEEC------------------CCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence            56889999998                  5566655554310         00245689999998886666654

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.18  E-value=5.6e-09  Score=80.34  Aligned_cols=185  Identities=14%  Similarity=0.063  Sum_probs=118.3

Q ss_pred             CCCCeEEEecC-C----CeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEe----------CCccEEEEe
Q psy11529         19 NTRQQLAFTPN-N----QEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCS----------ADRNAYVWT   83 (244)
Q Consensus        19 ~~~~~l~~~~~-d----~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~d~~i~iwd   83 (244)
                      ++++.++++.. +    +.|.++|..+  .  +.+..+..-..+  .++++||+++++.+.          .++.|.++|
T Consensus        82 ~~~~~vyV~n~~~~~~~~~VsVID~~t--~--~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD  155 (426)
T 3c75_H           82 PDARRVYIQDPAHFAAITQQFVIDGST--G--RILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFD  155 (426)
T ss_dssp             CCTTEEEEEECTTTCSSEEEEEEETTT--T--EEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             CCCCEEEEECCCcCCCCCeEEEEECCC--C--EEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEE
Confidence            46676665544 2    6999999977  4  667777654555  899999999888775          367899999


Q ss_pred             eeCCCCCceeeEEEecc-----CcceEEEEECCCCCeEEEeeC--CCeEEEEEeecCCCceEEEeeecCCCCceeEEEec
Q psy11529         84 QNNDDKKWKPTLVLLRI-----NRAATCVKWSPLENKFAAGSG--ARLISVCYFESENDWWVAKHIKKPIKSTITCLDWH  156 (244)
Q Consensus        84 ~~~~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~  156 (244)
                        ..+.+....+.+.+.     ......+.|+|||++++++..  ++.|.+.|..+.+.   ......+.  .   ....
T Consensus       156 --~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kv---v~~I~v~g--~---~~~~  225 (426)
T 3c75_H          156 --PVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTF---DRMLDVPD--C---YHIF  225 (426)
T ss_dssp             --TTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEE---EEEEECCS--E---EEEE
T ss_pred             --CCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeE---EEEEEcCC--c---eeec
Confidence              788876555543211     134567899999999999874  57899999888764   22222221  1   2333


Q ss_pred             CCC-CEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeE----EecCCCCCCCC-eEEEEEecCCCEEEEeeC
Q psy11529        157 PNN-HLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLV----ELNNSSSGGGW-IHSVAFSKDGNKLCWTSH  230 (244)
Q Consensus       157 p~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~-v~~~~~s~~~~~l~~~~~  230 (244)
                      |++ +.+++.+.||++.+.+...                  ++...    .+...   ..+ ...+.|.+++..++..+.
T Consensus       226 p~g~~~~v~~~~dG~~~~V~~~~------------------~~v~~~~~~~~~v~---~~p~~~~~~~~~dg~~~~~~s~  284 (426)
T 3c75_H          226 PASPTVFYMNCRDGSLARVDFAD------------------GETKVTNTEVFHTE---DELLINHPAFSLRSGRLVWPTY  284 (426)
T ss_dssp             EEETTEEEEEETTSSEEEEECCT------------------TCCEEEECCCCSCT---TSCBCSCCEECTTTCEEEEEBT
T ss_pred             cCCCcEEEEEcCCCCEEEEECCC------------------CcEEEEeeeeeccC---CCceeeEeeecCCCCEEEEEeC
Confidence            433 4555566677777776621                  11111    11111   111 123567888887766677


Q ss_pred             CCcEEEEeCC
Q psy11529        231 DGSINVRMSQ  240 (244)
Q Consensus       231 dg~i~vwd~~  240 (244)
                      .+.+.+.|+.
T Consensus       285 ~g~V~ViD~~  294 (426)
T 3c75_H          285 TGKIFQADLT  294 (426)
T ss_dssp             TSEEEEEEEC
T ss_pred             CCcEEEEecc
Confidence            7888888874

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=99.13  E-value=4.4e-07  Score=64.87  Aligned_cols=204  Identities=12%  Similarity=0.143  Sum_probs=126.4

Q ss_pred             CCceEEEEEcCCCCeE-EEecCCCeEEEeeeccCCCcceeeeeec-cCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeC
Q psy11529          9 INPVTTHAWNNTRQQL-AFTPNNQEVHLYQYEKAANDWSQLDVLD-GHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNN   86 (244)
Q Consensus         9 ~~~v~~~~~~~~~~~l-~~~~~d~~v~v~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~   86 (244)
                      .+.+..++|+|++..| ++...++.|...|...     +....+. +-......+++.+++.++++.-.++.+.++++. 
T Consensus        26 ~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~g-----~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~-   99 (255)
T 3qqz_A           26 TNNISSLTWSAQSNTLFSTINKPAAIVEMTTNG-----DLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT-   99 (255)
T ss_dssp             CSCEEEEEEETTTTEEEEEEETTEEEEEEETTC-----CEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC-
T ss_pred             ccCcceeEEeCCCCEEEEEECCCCeEEEEeCCC-----CEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC-
Confidence            3579999999976654 4566678888888765     4444442 122567889999888776766567889999842 


Q ss_pred             CCCCce--eeEEE----eccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecC---CCceEEEe---eecCCCCceeEEE
Q psy11529         87 DDKKWK--PTLVL----LRINRAATCVKWSPLENKFAAGSGARLISVCYFESE---NDWWVAKH---IKKPIKSTITCLD  154 (244)
Q Consensus        87 ~~~~~~--~~~~~----~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~---~~~~~~~~---~~~~~~~~v~~~~  154 (244)
                      ..+...  ....+    ...+.....++|+|.++.|+++.......+|.++..   ........   ........+.+++
T Consensus       100 ~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~  179 (255)
T 3qqz_A          100 PNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAE  179 (255)
T ss_dssp             TTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEE
T ss_pred             CCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEE
Confidence            222211  11111    113445689999999888887777666677777621   11111100   0011234678999


Q ss_pred             ecCCC-CEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCC------CCCCCeEEEEEecCCCEEEE
Q psy11529        155 WHPNN-HLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSS------SGGGWIHSVAFSKDGNKLCW  227 (244)
Q Consensus       155 ~~p~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~v~~~~~s~~~~~l~~  227 (244)
                      ++|.. ++++.......+.++|.                   .++.+..+....      ..-.....++|.++|++.++
T Consensus       180 ~dp~tg~lliLS~~s~~L~~~d~-------------------~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv  240 (255)
T 3qqz_A          180 FNQQKNTLLVLSHESRALQEVTL-------------------VGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV  240 (255)
T ss_dssp             EETTTTEEEEEETTTTEEEEECT-------------------TCCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE
T ss_pred             EcCCCCeEEEEECCCCeEEEEcC-------------------CCCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE
Confidence            99954 56666666778889986                   355444443320      00135689999999985554


Q ss_pred             eeCCCcEEEEe
Q psy11529        228 TSHDGSINVRM  238 (244)
Q Consensus       228 ~~~dg~i~vwd  238 (244)
                       ++.+.++++.
T Consensus       241 -sE~n~~y~f~  250 (255)
T 3qqz_A          241 -SEPNRFYRFT  250 (255)
T ss_dssp             -ETTTEEEEEE
T ss_pred             -cCCceEEEEE
Confidence             6777666664

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.11  E-value=7.5e-09  Score=84.84  Aligned_cols=159  Identities=7%  Similarity=0.009  Sum_probs=106.0

Q ss_pred             EEEeCCCCCeEEEEeCCc-------------------cEEEEeeeCCCCCceeeEEEeccC-------cceEEEEECCCC
Q psy11529         60 GIDWAPNTNRIVTCSADR-------------------NAYVWTQNNDDKKWKPTLVLLRIN-------RAATCVKWSPLE  113 (244)
Q Consensus        60 ~~~~~~~~~~l~~~~~d~-------------------~i~iwd~~~~~~~~~~~~~~~~~~-------~~v~~~~~~~~~  113 (244)
                      .++++|++..++.++.++                   .|..+|  ..+++.........+.       .....+....+|
T Consensus       247 ~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD--~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG  324 (677)
T 1kb0_A          247 SMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALD--PDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAG  324 (677)
T ss_dssp             CEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEEC--TTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETT
T ss_pred             ceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEE--CCCCCEEEEEecCCCcccccccCCCcEEEecccCC
Confidence            577888888888776654                   488888  8889876665543332       122223333466


Q ss_pred             ---CeEEEeeCCCeEEEEEeecCCCceEEEeeecC-------CCCc------------------------eeEEEecCCC
Q psy11529        114 ---NKFAAGSGARLISVCYFESENDWWVAKHIKKP-------IKST------------------------ITCLDWHPNN  159 (244)
Q Consensus       114 ---~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~-------~~~~------------------------v~~~~~~p~~  159 (244)
                         ..++.++.+|.++++|.++++..+........       ....                        -..++++|++
T Consensus       325 ~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~  404 (677)
T 1kb0_A          325 KPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQT  404 (677)
T ss_dssp             EEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTT
T ss_pred             cEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCC
Confidence               67889999999999999988764433211000       0000                        1257889988


Q ss_pred             CEEEEeeCC-------------------------------------------CeEEEEEeeecccccCCCCCCCCccccc
Q psy11529        160 HLLGCGSTD-------------------------------------------FKVRVFSAYIKDIESAPQSTNWGSKSTL  196 (244)
Q Consensus       160 ~~l~~~~~d-------------------------------------------g~i~i~d~~~~~~~~~~~~~~~~~~~~~  196 (244)
                      .++++...+                                           |.|..||+                  .+
T Consensus       405 ~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~------------------~t  466 (677)
T 1kb0_A          405 GLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDP------------------VA  466 (677)
T ss_dssp             TEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEET------------------TT
T ss_pred             CEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeC------------------CC
Confidence            888776542                                           56777777                  56


Q ss_pred             cceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCCC
Q psy11529        197 GNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQV  242 (244)
Q Consensus       197 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~  242 (244)
                      ++.+-.+..    ..++....+..++.+++.++.||.+++||+++-
T Consensus       467 G~~~W~~~~----~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG  508 (677)
T 1kb0_A          467 QKAAWSVEH----VSPWNGGTLTTAGNVVFQGTADGRLVAYHAATG  508 (677)
T ss_dssp             TEEEEEEEE----SSSCCCCEEEETTTEEEEECTTSEEEEEETTTC
T ss_pred             CcEEeecCC----CCCCcCcceEeCCCEEEEECCCCcEEEEECCCC
Confidence            777666654    334455566778888888999999999998864

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=99.10  E-value=6.6e-08  Score=68.86  Aligned_cols=187  Identities=9%  Similarity=0.037  Sum_probs=114.6

Q ss_pred             CceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeee-ccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCCC
Q psy11529         10 NPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVL-DGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDD   88 (244)
Q Consensus        10 ~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~   88 (244)
                      .-...+.|+ ++.++.+.+.+|.|+++|+++  +  +.+..+ .. ...-..+++.. ++..+..-.++.+.+||  ..+
T Consensus        55 ~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~T--g--kv~~~~l~~-~~FgeGit~~g-~~Ly~ltw~~~~v~V~D--~~T  125 (268)
T 3nok_A           55 AFTQGLVFH-QGHFFESTGHQGTLRQLSLES--A--QPVWMERLG-NIFAEGLASDG-ERLYQLTWTEGLLFTWS--GMP  125 (268)
T ss_dssp             CCEEEEEEE-TTEEEEEETTTTEEEECCSSC--S--SCSEEEECT-TCCEEEEEECS-SCEEEEESSSCEEEEEE--TTT
T ss_pred             cccceEEEE-CCEEEEEcCCCCEEEEEECCC--C--cEEeEECCC-CcceeEEEEeC-CEEEEEEccCCEEEEEE--CCc
Confidence            334678887 456777778889999999987  5  333333 32 11123455543 23334444689999999  788


Q ss_pred             CCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCC-CCceeEEEecCCCCEEEEeeC
Q psy11529         89 KKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPI-KSTITCLDWHPNNHLLGCGST  167 (244)
Q Consensus        89 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~-~~~v~~~~~~p~~~~l~~~~~  167 (244)
                      .+....+..   ...-..++  ++++.|+.+..++.|.++|..+.+..........+. -..++.+.|. +|++.+..-.
T Consensus       126 l~~~~ti~~---~~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~  199 (268)
T 3nok_A          126 PQRERTTRY---SGEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWH  199 (268)
T ss_dssp             TEEEEEEEC---SSCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETT
T ss_pred             CcEEEEEeC---CCceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECC
Confidence            776555543   22223444  467888888889999999988776522222111111 1245667777 7765555556


Q ss_pred             CCeEEEEEeeecccccCCCCCCCCccccccceeEEecCC----------CCCCCCeEEEEEecCCCEEEEee
Q psy11529        168 DFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNS----------SSGGGWIHSVAFSKDGNKLCWTS  229 (244)
Q Consensus       168 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~v~~~~~s~~~~~l~~~~  229 (244)
                      +..|.+.|.                  .+++.+..+...          .......+.++|+|+++.|+..+
T Consensus       200 s~~I~vIDp------------------~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG  253 (268)
T 3nok_A          200 SSDVLEIDP------------------ATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG  253 (268)
T ss_dssp             CSEEEEECT------------------TTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred             CCeEEEEeC------------------CCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence            889999998                  556665554421          00134678999999766554444

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=99.09  E-value=5.2e-09  Score=82.77  Aligned_cols=201  Identities=7%  Similarity=-0.109  Sum_probs=123.1

Q ss_pred             CceEEEEE-c-CCCCeEEEec------------------CCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCe
Q psy11529         10 NPVTTHAW-N-NTRQQLAFTP------------------NNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNR   69 (244)
Q Consensus        10 ~~v~~~~~-~-~~~~~l~~~~------------------~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~   69 (244)
                      .....+++ + |+++++++++                  .++.+.+.|.++  .  +...++.--. .-..++++|+|++
T Consensus       134 ~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t--~--~v~~qI~Vgg-~pd~~~~spdGk~  208 (595)
T 1fwx_A          134 KGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADK--W--EVAWQVLVSG-NLDNCDADYEGKW  208 (595)
T ss_dssp             CSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTT--T--EEEEEEEESS-CCCCEEECSSSSE
T ss_pred             CCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEECCC--C--eEEEEEEeCC-CccceEECCCCCE
Confidence            55778887 5 9999988874                  245788888876  3  4555544212 3456789999999


Q ss_pred             EEEEeCCc--------------------------------------cEEEEeeeCCC--CCceeeEEEeccCcceEEEEE
Q psy11529         70 IVTCSADR--------------------------------------NAYVWTQNNDD--KKWKPTLVLLRINRAATCVKW  109 (244)
Q Consensus        70 l~~~~~d~--------------------------------------~i~iwd~~~~~--~~~~~~~~~~~~~~~v~~~~~  109 (244)
                      +++++.+.                                      .|.+.|  ..+  ++. ....+ .......++.+
T Consensus       209 ~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID--~~~~~~~~-~~~~I-pvg~~PhGv~~  284 (595)
T 1fwx_A          209 AFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVD--GRKEASSL-FTRYI-PIANNPHGCNM  284 (595)
T ss_dssp             EEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEE--CSGGGCCS-SEEEE-EEESSCCCEEE
T ss_pred             EEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEe--CcccCCce-eEEEE-ecCCCceEEEE
Confidence            88887542                                      366666  444  221 01111 12345678999


Q ss_pred             CCCCCeEEEee-CCCeEEEEEeecCCCc-------eEEEeeecCCCCceeEEEecCCCCEEEEeeCCCeEEEEEeeeccc
Q psy11529        110 SPLENKFAAGS-GARLISVCYFESENDW-------WVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDI  181 (244)
Q Consensus       110 ~~~~~~l~~~~-~d~~i~i~d~~~~~~~-------~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~  181 (244)
                      +|||+++++++ .+.+|.++|+.+.+..       ................++|+|+|...++..-|++|.+||+.....
T Consensus       285 sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~  364 (595)
T 1fwx_A          285 APDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIR  364 (595)
T ss_dssp             CTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHH
T ss_pred             cCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhh
Confidence            99999877766 4889999999865210       000111122335788999999995445566799999999843100


Q ss_pred             ccCCCCCCCCccccccceeEEecCCCCCCCCe-----EEEEEecCCCEEEEeeC
Q psy11529        182 ESAPQSTNWGSKSTLGNCLVELNNSSSGGGWI-----HSVAFSKDGNKLCWTSH  230 (244)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-----~~~~~s~~~~~l~~~~~  230 (244)
                      .. ...       ...+.+..+..|   ..+-     ..+.++|||++|++...
T Consensus       365 ~~-~g~-------~~~~vi~kidV~---yqpGh~~~~~g~t~~~DGk~l~~~Nk  407 (595)
T 1fwx_A          365 AY-AGE-------KVDPIKDKLDVH---YQPGHLKTVMGETLDATNDWLVCLSK  407 (595)
T ss_dssp             HH-HTC-------SCCCEEEEEECS---SCEEEEEETTTTSTTCCSSEEEEEES
T ss_pred             hh-ccc-------ccceeEEEeecc---cccccceeccceEeCCCCCEEEEcCC
Confidence            00 000       114556666654   3221     12245799999988753

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=99.06  E-value=1e-07  Score=79.23  Aligned_cols=158  Identities=11%  Similarity=0.077  Sum_probs=90.4

Q ss_pred             ceEEEEEc-CCCCeEEEecC-----CCeEEEeeeccCCC-cceeeeeeccCCCceEEEEeCCCCCeEEEEeCC-----cc
Q psy11529         11 PVTTHAWN-NTRQQLAFTPN-----NQEVHLYQYEKAAN-DWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSAD-----RN   78 (244)
Q Consensus        11 ~v~~~~~~-~~~~~l~~~~~-----d~~v~v~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~   78 (244)
                      .+...+|| |||++||.+..     ..+|+++|+.+  + +. ....+.   .....++|+|||+.|+....+     ..
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~--g~~~-l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~  248 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISD--PSQT-IADKVS---GTNGEIVWGPDHTSLFYVTKDETLRENK  248 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTC--TTCC-CCCCEE---EECSCCEECSSTTEEEEEEECTTCCEEE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCC--CCEe-CCcccc---CceeeEEEecCCCEEEEEEECCCCCCCE
Confidence            56789999 99999886633     23599999987  3 21 111121   123468899999988877654     35


Q ss_pred             EEEEeeeCCCCCceeeEEEe-ccCcceEEEEECCCCCeEEEeeC---CCeEEEEEeecCCCceEEEeeecCCCCceeEEE
Q psy11529         79 AYVWTQNNDDKKWKPTLVLL-RINRAATCVKWSPLENKFAAGSG---ARLISVCYFESENDWWVAKHIKKPIKSTITCLD  154 (244)
Q Consensus        79 i~iwd~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~  154 (244)
                      |.+++  +.++......... ........+.|+|||++|+....   ...|.++|+......................+.
T Consensus       249 v~~~~--lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~  326 (751)
T 2xe4_A          249 VWRHV--MGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQ  326 (751)
T ss_dssp             EEEEE--TTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEE
T ss_pred             EEEEE--CCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEe
Confidence            67777  6665432222222 22344568899999999887653   345777777665321100222222234445555


Q ss_pred             ecCCCCEEEEeeCC--C--eEEEEEe
Q psy11529        155 WHPNNHLLGCGSTD--F--KVRVFSA  176 (244)
Q Consensus       155 ~~p~~~~l~~~~~d--g--~i~i~d~  176 (244)
                      |+..+.+++....+  +  .|..+|+
T Consensus       327 ~~~g~~l~~~t~~~~a~~~~L~~~d~  352 (751)
T 2xe4_A          327 MHGTSHLVILTNEGGAVNHKLLIAPR  352 (751)
T ss_dssp             EETTTEEEEEECTTTCTTCEEEEEET
T ss_pred             eeeCCEEEEEeCCCCCCCcEEEEEcC
Confidence            55444444444433  3  4555554

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=99.05  E-value=1.2e-07  Score=70.76  Aligned_cols=199  Identities=7%  Similarity=-0.041  Sum_probs=115.3

Q ss_pred             ceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeec-----------------cCCCceEEEEeCC-CCCeEEE
Q psy11529         11 PVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLD-----------------GHDLKVTGIDWAP-NTNRIVT   72 (244)
Q Consensus        11 ~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~-----------------~~~~~v~~~~~~~-~~~~l~~   72 (244)
                      ...+++|.++++++.++..++.|..|+..+  +.........                 .......++++.+ +++ |+.
T Consensus        20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-l~v   96 (322)
T 2fp8_A           20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPN--SGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-LYI   96 (322)
T ss_dssp             CCCCEECCTTCSSEEEECTTSEEEEECCTT--TCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-EEE
T ss_pred             CceEEEEcCCCCEEEEEcCCCeEEEECCCC--CceEEEecccccccccccccccchhccccCCCCceEEEcCCCCc-EEE
Confidence            456789999998777888889999998866  3222211100                 0113578899998 565 444


Q ss_pred             EeCCccEEEEeeeCCCCCceeeEEEec--cCcceEEEEECC-CCCeEEEeeC-----------------CCeEEEEEeec
Q psy11529         73 CSADRNAYVWTQNNDDKKWKPTLVLLR--INRAATCVKWSP-LENKFAAGSG-----------------ARLISVCYFES  132 (244)
Q Consensus        73 ~~~d~~i~iwd~~~~~~~~~~~~~~~~--~~~~v~~~~~~~-~~~~l~~~~~-----------------d~~i~i~d~~~  132 (244)
                      +...+.+..+|  ..++..........  .......+++.+ +|+..++-..                 ++.+..+|..+
T Consensus        97 ~d~~~~i~~~d--~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~  174 (322)
T 2fp8_A           97 VDCYYHLSVVG--SEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPST  174 (322)
T ss_dssp             EETTTEEEEEC--TTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTT
T ss_pred             EECCCCEEEEe--CCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCC
Confidence            54445588888  55543221111111  123468899999 8876665322                 35676766554


Q ss_pred             CCCceEEEeeecCCCCceeEEEecCCCCEEEEe-eCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCC
Q psy11529        133 ENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCG-STDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGG  211 (244)
Q Consensus       133 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (244)
                      ++.    ..... .......++++|+++.|+.+ +..+.|.+|++.....             ...+....  .    .+
T Consensus       175 ~~~----~~~~~-~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~-------------~~~~~~~~--~----~g  230 (322)
T 2fp8_A          175 KET----TLLLK-ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKK-------------GTAEVLVK--I----PN  230 (322)
T ss_dssp             TEE----EEEEE-EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTT-------------TCEEEEEE--C----SS
T ss_pred             CEE----EEecc-CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcC-------------CccceEEe--C----CC
Confidence            432    11111 11345679999999866555 5568999999742110             00111111  1    33


Q ss_pred             CeEEEEEecCCCEEEEeeC----------CCcEEEEeC
Q psy11529        212 WIHSVAFSKDGNKLCWTSH----------DGSINVRMS  239 (244)
Q Consensus       212 ~v~~~~~s~~~~~l~~~~~----------dg~i~vwd~  239 (244)
                       ...+++.++|++.++...          .+.|..+|.
T Consensus       231 -P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~  267 (322)
T 2fp8_A          231 -PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDE  267 (322)
T ss_dssp             -EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECT
T ss_pred             -CCCeEECCCCCEEEEecCcccccccCCCccEEEEECC
Confidence             678889999886665543          345666654

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.05  E-value=1.4e-10  Score=88.27  Aligned_cols=172  Identities=14%  Similarity=0.009  Sum_probs=87.4

Q ss_pred             ceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCC-ceE-EEEeCCCCCeEEEEeCCccEEEEeeeCCC
Q psy11529         11 PVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDL-KVT-GIDWAPNTNRIVTCSADRNAYVWTQNNDD   88 (244)
Q Consensus        11 ~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~-~v~-~~~~~~~~~~l~~~~~d~~i~iwd~~~~~   88 (244)
                      ++.+..+..++..+++++.|+.|+.||..+  +  +.+..+..+.. .+. +..+. .+..+++++.++.++.||  ..+
T Consensus        39 ~~~s~p~~~~g~~~v~~s~dg~l~a~d~~t--G--~~~w~~~~~~~~~~~~sp~~~-~~~~v~~g~~dg~v~a~D--~~t  111 (369)
T 2hz6_A           39 PVLQVPTHVEEPAFLPDPNDGSLYTLGSKN--N--EGLTKLPFTIPELVQASPCRS-SDGILYMGKKQDIWYVID--LLT  111 (369)
T ss_dssp             CSCCCC-----CCEEECTTTCCEEEC---------CCSEECSCCHHHHHTTCSCC------CCCCEEEEEEEEEC--CC-
T ss_pred             CceecceEcCCCEEEEeCCCCEEEEEECCC--C--ceeeeeeccCccccccCceEe-cCCEEEEEeCCCEEEEEE--CCC
Confidence            344444556777888888999999999966  3  33333332211 110 11111 345677888899999999  788


Q ss_pred             CCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCC---CEEEEe
Q psy11529         89 KKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNN---HLLGCG  165 (244)
Q Consensus        89 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~---~~l~~~  165 (244)
                      ++.......  +.    ...++|++..+++++.++.++.||.++++..|.....      ......+.++.   ..++++
T Consensus       112 G~~~w~~~~--~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~------~~~~~~~~~~~~~~~~v~~~  179 (369)
T 2hz6_A          112 GEKQQTLSS--AF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYF------DYAASLPEDDVDYKMSHFVS  179 (369)
T ss_dssp             ---------------------------EEEEEEEEEEECCCSSSSSCCCEEEEE------EECCBCCCCCTTCCCCEEEE
T ss_pred             CcEEEEecC--CC----cccccccCCEEEEEecCCEEEEEECCCCCEEEeEecc------cccCccccCCccccceEEEE
Confidence            875544432  11    2345678888999999999999999998875544321      11233344432   467778


Q ss_pred             eCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeE-EEEEecCCC
Q psy11529        166 STDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIH-SVAFSKDGN  223 (244)
Q Consensus       166 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~s~~~~  223 (244)
                      +.+|.|+.||.                  .+++.+..+..    ..++. ...++++|.
T Consensus       180 ~~dg~v~a~d~------------------~tG~~~W~~~~----~~pv~~~~~~~~dg~  216 (369)
T 2hz6_A          180 NGDGLVVTVDS------------------ESGDVLWIQNY----ASPVVAFYVWQREGL  216 (369)
T ss_dssp             ETSCEEEEECT------------------TTCCEEEEEEC----SSCEEEEEECTTSSC
T ss_pred             CCCCEEEEEEC------------------CCCcEEEEecC----CCceEEEEEecCCce
Confidence            89999999998                  56777766654    33443 344555664

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=99.04  E-value=3.8e-07  Score=64.39  Aligned_cols=189  Identities=12%  Similarity=0.086  Sum_probs=113.8

Q ss_pred             CCceEEEEEcCCCCeEEEecCC--CeEEEeeeccCCCcceeeeeeccCCC-ceEEEEeCCCCCeEE-EEeCCccEEEEee
Q psy11529          9 INPVTTHAWNNTRQQLAFTPNN--QEVHLYQYEKAANDWSQLDVLDGHDL-KVTGIDWAPNTNRIV-TCSADRNAYVWTQ   84 (244)
Q Consensus         9 ~~~v~~~~~~~~~~~l~~~~~d--~~v~v~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~-~~~~d~~i~iwd~   84 (244)
                      ..-...+.|++ +.++.+.+..  ..|+++|+.+  +  +.+..+.-... .-..+++.  +..|. ..-.++.+.+|| 
T Consensus        20 ~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~t--g--kv~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~~~v~v~D-   91 (243)
T 3mbr_X           20 TAFTEGLFYLR-GHLYESTGETGRSSVRKVDLET--G--RILQRAEVPPPYFGAGIVAW--RDRLIQLTWRNHEGFVYD-   91 (243)
T ss_dssp             TCCEEEEEEET-TEEEEEECCTTSCEEEEEETTT--C--CEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEE-
T ss_pred             ccccccEEEEC-CEEEEECCCCCCceEEEEECCC--C--CEEEEEeCCCCcceeEEEEe--CCEEEEEEeeCCEEEEEE-
Confidence            34566889986 5666666654  4899999987  5  44444432111 11234443  44444 445689999999 


Q ss_pred             eCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCC-CceeEEEecCCCCEEE
Q psy11529         85 NNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIK-STITCLDWHPNNHLLG  163 (244)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~-~~v~~~~~~p~~~~l~  163 (244)
                       ..+.+....+...   ..-..++  +++..|+.+..++.|.++|..+.+..........+.. ..++.+.|. +|+.++
T Consensus        92 -~~tl~~~~ti~~~---~~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lya  164 (243)
T 3mbr_X           92 -LATLTPRARFRYP---GEGWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLA  164 (243)
T ss_dssp             -TTTTEEEEEEECS---SCCCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEE
T ss_pred             -CCcCcEEEEEeCC---CCceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEE
Confidence             7787755555432   2334444  4677777777889999999887765222222111111 345566665 666555


Q ss_pred             EeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCC----------CCCCCCeEEEEEecCCCEEEEeeC
Q psy11529        164 CGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNS----------SSGGGWIHSVAFSKDGNKLCWTSH  230 (244)
Q Consensus       164 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~v~~~~~s~~~~~l~~~~~  230 (244)
                      ..-.+..|.+.|.                  .+++.+..+...          .......+.++++|+++.|+..+.
T Consensus       165 nvw~s~~I~vIDp------------------~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK  223 (243)
T 3mbr_X          165 NVWLTSRIARIDP------------------ASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK  223 (243)
T ss_dssp             EETTTTEEEEECT------------------TTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred             EECCCCeEEEEEC------------------CCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence            5556789999998                  555555554421          001346789999998776555543

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.03  E-value=3.7e-08  Score=80.75  Aligned_cols=183  Identities=11%  Similarity=0.098  Sum_probs=119.7

Q ss_pred             EEEEcCCCCeEEEecCCC-------------------eEEEeeeccCCCcceeeeeecc--CC-------CceEEEEeCC
Q psy11529         14 THAWNNTRQQLAFTPNNQ-------------------EVHLYQYEKAANDWSQLDVLDG--HD-------LKVTGIDWAP   65 (244)
Q Consensus        14 ~~~~~~~~~~l~~~~~d~-------------------~v~v~~~~~~~~~~~~~~~~~~--~~-------~~v~~~~~~~   65 (244)
                      .++++|++.+++++..++                   .|..+|..+  +  +....++.  |.       .....+....
T Consensus       247 ~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~T--G--~~~W~~~~~~~d~wd~~~~~~p~l~~~~~  322 (677)
T 1kb0_A          247 SMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDT--G--KYKWHYQETPGDNWDYTSTQPMILADIKI  322 (677)
T ss_dssp             CEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTT--C--CEEEEEESSTTCCSCCCCCSCCEEEEEEE
T ss_pred             ceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCC--C--CEEEEEecCCCcccccccCCCcEEEeccc
Confidence            578889888888876654                   488888876  5  44433332  21       1122233334


Q ss_pred             CC---CeEEEEeCCccEEEEeeeCCCCCceeeEEEeccC---------cce------------------------EEEEE
Q psy11529         66 NT---NRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRIN---------RAA------------------------TCVKW  109 (244)
Q Consensus        66 ~~---~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~---------~~v------------------------~~~~~  109 (244)
                      +|   ..++.++.+|.++++|  ..+++.+.........         ..+                        ..++|
T Consensus       323 dG~~~~~l~~~~~~G~l~~lD--~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~  400 (677)
T 1kb0_A          323 AGKPRKVILHAPKNGFFFVLD--RTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSF  400 (677)
T ss_dssp             TTEEEEEEEECCTTSEEEEEE--TTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEE
T ss_pred             CCcEeeEEEEECCCCEEEEEE--CCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceE
Confidence            67   6788899999999999  8888865443321100         000                        15688


Q ss_pred             CCCCCeEEEeeC-------------------------------------------CCeEEEEEeecCCCceEEEeeecCC
Q psy11529        110 SPLENKFAAGSG-------------------------------------------ARLISVCYFESENDWWVAKHIKKPI  146 (244)
Q Consensus       110 ~~~~~~l~~~~~-------------------------------------------d~~i~i~d~~~~~~~~~~~~~~~~~  146 (244)
                      +|+..++++...                                           .+.|..||+.+++..|....     
T Consensus       401 dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~-----  475 (677)
T 1kb0_A          401 NPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEH-----  475 (677)
T ss_dssp             ETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEE-----
T ss_pred             cCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCC-----
Confidence            898888777543                                           27799999998876444432     


Q ss_pred             CCceeEEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEE
Q psy11529        147 KSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLC  226 (244)
Q Consensus       147 ~~~v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  226 (244)
                      ........+.+++.++++++.||.+++||.                  .+++.+.++....  .....-+.|.++|+.++
T Consensus       476 ~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~------------------~tG~~lw~~~~~~--~~~~~p~~y~~~G~~~v  535 (677)
T 1kb0_A          476 VSPWNGGTLTTAGNVVFQGTADGRLVAYHA------------------ATGEKLWEAPTGT--GVVAAPSTYMVDGRQYV  535 (677)
T ss_dssp             SSSCCCCEEEETTTEEEEECTTSEEEEEET------------------TTCCEEEEEECSS--CCCSCCEEEEETTEEEE
T ss_pred             CCCCcCcceEeCCCEEEEECCCCcEEEEEC------------------CCCceeeeeeCCC--CcccCCEEEEeCCEEEE
Confidence            223444556677888888999999999999                  7888888887542  33334566778887444


Q ss_pred             E
Q psy11529        227 W  227 (244)
Q Consensus       227 ~  227 (244)
                      .
T Consensus       536 ~  536 (677)
T 1kb0_A          536 S  536 (677)
T ss_dssp             E
T ss_pred             E
Confidence            3

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.03  E-value=9.3e-07  Score=64.02  Aligned_cols=186  Identities=11%  Similarity=0.053  Sum_probs=112.8

Q ss_pred             CeEEEecCCCeEEEeeeccCCCccee---eeeeccCCCceEEEEeCCCCCeEEEE-eCCccEEEEeeeCCCCCceeeEEE
Q psy11529         22 QQLAFTPNNQEVHLYQYEKAANDWSQ---LDVLDGHDLKVTGIDWAPNTNRIVTC-SADRNAYVWTQNNDDKKWKPTLVL   97 (244)
Q Consensus        22 ~~l~~~~~d~~v~v~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~   97 (244)
                      .+|+.+.. +.|+.+++++  .....   ...+........+++|++++..|+.+ ...+.|..++  ...+...  ...
T Consensus         2 ~~l~~~~~-~~I~~~~~~g--~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~--~~g~~~~--~~~   74 (267)
T 1npe_A            2 THLLFAQT-GKIERLPLER--NTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRAS--LHGGEPT--TII   74 (267)
T ss_dssp             EEEEEEEE-EEEEEEEESS--SCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEE--SSSCCCE--EEE
T ss_pred             cEEEEEcC-CeEEEEEecC--cccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEe--cCCCCcE--EEE
Confidence            45666553 5788888876  31111   11122223457899999976655554 4578899999  5544321  112


Q ss_pred             eccCcceEEEEECCCCCeEEEe-eCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEeeC---CCeEEE
Q psy11529         98 LRINRAATCVKWSPLENKFAAG-SGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGST---DFKVRV  173 (244)
Q Consensus        98 ~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~---dg~i~i  173 (244)
                      .........++++|++..|+.+ ...+.|.+++++....    .............++++|++..|+.+..   .+.|..
T Consensus        75 ~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~----~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~  150 (267)
T 1npe_A           75 RQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR----RVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIET  150 (267)
T ss_dssp             CTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC----EEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEE
T ss_pred             ECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCE----EEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEE
Confidence            2223567899999976665555 4567899988875433    1112222246789999997665555443   367888


Q ss_pred             EEeeecccccCCCCCCCCccccccceeEEec-CCCCCCCCeEEEEEecCCCEEEEee-CCCcEEEEeCC
Q psy11529        174 FSAYIKDIESAPQSTNWGSKSTLGNCLVELN-NSSSGGGWIHSVAFSKDGNKLCWTS-HDGSINVRMSQ  240 (244)
Q Consensus       174 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~vwd~~  240 (244)
                      +++.                   +.....+. ..   ......++++|++..|+.+. ..+.|.++|+.
T Consensus       151 ~~~d-------------------g~~~~~~~~~~---~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~  197 (267)
T 1npe_A          151 SHMD-------------------GTNRRILAQDN---LGLPNGLTFDAFSSQLCWVDAGTHRAECLNPA  197 (267)
T ss_dssp             EETT-------------------SCCCEEEECTT---CSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             EecC-------------------CCCcEEEEECC---CCCCcEEEEcCCCCEEEEEECCCCEEEEEecC
Confidence            8762                   22222221 22   44678999999877665554 56789999875

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=99.02  E-value=8.6e-07  Score=65.61  Aligned_cols=200  Identities=13%  Similarity=0.021  Sum_probs=115.2

Q ss_pred             CceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCc--cEEEEeeeCC
Q psy11529         10 NPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADR--NAYVWTQNND   87 (244)
Q Consensus        10 ~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~--~i~iwd~~~~   87 (244)
                      .....++|+++|+++++...++.|..|+..+     .....+. .......++++++|+++++.....  .|..+|  ..
T Consensus        32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g-----~~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d--~~  103 (306)
T 2p4o_A           32 TFLENLASAPDGTIFVTNHEVGEIVSITPDG-----NQQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVSLV--KS  103 (306)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTC-----CEEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEEEE--CT
T ss_pred             CCcceEEECCCCCEEEEeCCCCeEEEECCCC-----ceEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEEEc--CC
Confidence            4577899999999777766788999998766     2222222 345688999999998666543322  466666  66


Q ss_pred             CCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCC-ceEEEe-----eecCCCCceeEEEecCCCCE
Q psy11529         88 DKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESEND-WWVAKH-----IKKPIKSTITCLDWHPNNHL  161 (244)
Q Consensus        88 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~-~~~~~~-----~~~~~~~~v~~~~~~p~~~~  161 (244)
                      +++....... ........++..+++..+++-..++.|.++|...... ......     .....-...+.+  +|+++.
T Consensus       104 ~g~~~~~~~~-~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~  180 (306)
T 2p4o_A          104 DGTVETLLTL-PDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNF  180 (306)
T ss_dssp             TSCEEEEEEC-TTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTE
T ss_pred             CCeEEEEEeC-CCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCE
Confidence            7764332222 1222334555555554444444578787777654321 000000     000111234455  788876


Q ss_pred             EEEe-eCCCeEEEEEeeec-ccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeC
Q psy11529        162 LGCG-STDFKVRVFSAYIK-DIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMS  239 (244)
Q Consensus       162 l~~~-~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~  239 (244)
                      |+.+ ...++|..|++... ..             ...+....       ......++++++|+++++....+.|.++|.
T Consensus       181 lyv~d~~~~~I~~~~~~~~g~~-------------~~~~~~~~-------~~~P~gi~vd~dG~l~va~~~~~~V~~~~~  240 (306)
T 2p4o_A          181 LYVSNTEKMLLLRIPVDSTDKP-------------GEPEIFVE-------QTNIDDFAFDVEGNLYGATHIYNSVVRIAP  240 (306)
T ss_dssp             EEEEETTTTEEEEEEBCTTSCB-------------CCCEEEEE-------SCCCSSEEEBTTCCEEEECBTTCCEEEECT
T ss_pred             EEEEeCCCCEEEEEEeCCCCCC-------------CccEEEec-------cCCCCCeEECCCCCEEEEeCCCCeEEEECC
Confidence            5554 45678999998421 00             00111111       123456888899987777666778888875


Q ss_pred             C
Q psy11529        240 Q  240 (244)
Q Consensus       240 ~  240 (244)
                      .
T Consensus       241 ~  241 (306)
T 2p4o_A          241 D  241 (306)
T ss_dssp             T
T ss_pred             C
Confidence            4

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.01  E-value=4.6e-08  Score=80.37  Aligned_cols=182  Identities=13%  Similarity=0.099  Sum_probs=117.5

Q ss_pred             EEEEcCCCCeEEEecCCCe-------------------EEEeeeccCCCcceeeeeecc--CC-------CceEEEEeCC
Q psy11529         14 THAWNNTRQQLAFTPNNQE-------------------VHLYQYEKAANDWSQLDVLDG--HD-------LKVTGIDWAP   65 (244)
Q Consensus        14 ~~~~~~~~~~l~~~~~d~~-------------------v~v~~~~~~~~~~~~~~~~~~--~~-------~~v~~~~~~~   65 (244)
                      .++++|++.+++++..++.                   |..+|.++  +  +.+..++.  |.       .+........
T Consensus       239 ~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~T--G--~~~W~~~~~~~d~wd~~~~~~~~l~d~~~  314 (689)
T 1yiq_A          239 SFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADT--G--EYVWHYQTTPGDAWDYTATQHMILAELPI  314 (689)
T ss_dssp             CEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTT--C--CEEEEEESSTTCCSCCCCCSCEEEEEEEE
T ss_pred             ceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccC--C--ceeEeeecCCcccccccCCCCcEEEeecc
Confidence            5788898888888877653                   88999887  5  44444432  21       1222222222


Q ss_pred             CCC---eEEEEeCCccEEEEeeeCCCCCceeeEEEecc--------------------------C-----------cceE
Q psy11529         66 NTN---RIVTCSADRNAYVWTQNNDDKKWKPTLVLLRI--------------------------N-----------RAAT  105 (244)
Q Consensus        66 ~~~---~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~--------------------------~-----------~~v~  105 (244)
                      +|+   .++.++.+|.++++|  ..+++.+....+...                          .           ..-.
T Consensus       315 ~G~~~~~v~~~~~~G~l~~lD--~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~  392 (689)
T 1yiq_A          315 DGKPRKVLMQAPKNGFFYVID--RATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQ  392 (689)
T ss_dssp             TTEEEEEEEECCTTSEEEEEE--TTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSS
T ss_pred             CCcEEEEEEEECCCCeEEEEE--CCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCC
Confidence            554   788899999999999  888886532221100                          0           0011


Q ss_pred             EEEECCCCCeEEEeeC---------------------------------------------CCeEEEEEeecCCCceEEE
Q psy11529        106 CVKWSPLENKFAAGSG---------------------------------------------ARLISVCYFESENDWWVAK  140 (244)
Q Consensus       106 ~~~~~~~~~~l~~~~~---------------------------------------------d~~i~i~d~~~~~~~~~~~  140 (244)
                      .++|+|+..++++...                                             ++.|..||+.+++..|...
T Consensus       393 ~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~  472 (689)
T 1yiq_A          393 PMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVP  472 (689)
T ss_dssp             CCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEE
T ss_pred             cceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEcc
Confidence            2688888777776522                                             3779999999987644433


Q ss_pred             eeecCCCCceeEEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEec
Q psy11529        141 HIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSK  220 (244)
Q Consensus       141 ~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  220 (244)
                      ..     .....-.+...+.++++++.||.++.||.                  .+++.+.+++...  .....-+.|..
T Consensus       473 ~~-----~~~~~g~~~tagglvf~gt~dg~l~a~D~------------------~tG~~lw~~~~~~--~~~~~p~ty~~  527 (689)
T 1yiq_A          473 YV-----TIFNGGTLSTAGNLVFEGSADGRVIAYAA------------------DTGEKLWEQPAAS--GVMAAPVTYSV  527 (689)
T ss_dssp             ES-----SSCCCCEEEETTTEEEEECTTSEEEEEET------------------TTCCEEEEEECSS--CCCSCCEEEEE
T ss_pred             CC-----CCccCccceECCCEEEEECCCCcEEEEEC------------------CCCccceeeeCCC--CcccCceEEEE
Confidence            21     22333355667889999999999999999                  7889988887642  22234577788


Q ss_pred             CCCEEE
Q psy11529        221 DGNKLC  226 (244)
Q Consensus       221 ~~~~l~  226 (244)
                      +|+.++
T Consensus       528 ~G~qyv  533 (689)
T 1yiq_A          528 DGEQYV  533 (689)
T ss_dssp             TTEEEE
T ss_pred             CCEEEE
Confidence            998443

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.00  E-value=6.5e-08  Score=79.49  Aligned_cols=159  Identities=10%  Similarity=0.017  Sum_probs=102.5

Q ss_pred             EEEeCCCCCeEEEEeCCcc-------------------EEEEeeeCCCCCceeeEEEeccC-------cceEEEEECCCC
Q psy11529         60 GIDWAPNTNRIVTCSADRN-------------------AYVWTQNNDDKKWKPTLVLLRIN-------RAATCVKWSPLE  113 (244)
Q Consensus        60 ~~~~~~~~~~l~~~~~d~~-------------------i~iwd~~~~~~~~~~~~~~~~~~-------~~v~~~~~~~~~  113 (244)
                      .++++|+...++.++.++.                   |..+|  ..+++.+.......+.       ..+.......+|
T Consensus       239 ~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD--~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G  316 (689)
T 1yiq_A          239 SFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVN--ADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDG  316 (689)
T ss_dssp             CEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEE--TTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETT
T ss_pred             ceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEE--ccCCceeEeeecCCcccccccCCCCcEEEeeccCC
Confidence            5778888888888877763                   89999  8899876655533222       111112222245


Q ss_pred             C---eEEEeeCCCeEEEEEeecCCCceEEEeee------------------------cCCC-----------CceeEEEe
Q psy11529        114 N---KFAAGSGARLISVCYFESENDWWVAKHIK------------------------KPIK-----------STITCLDW  155 (244)
Q Consensus       114 ~---~l~~~~~d~~i~i~d~~~~~~~~~~~~~~------------------------~~~~-----------~~v~~~~~  155 (244)
                      +   .++.++.+|.++++|.++++..+......                        ....           ..-..+++
T Consensus       317 ~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~  396 (689)
T 1yiq_A          317 KPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSY  396 (689)
T ss_dssp             EEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEE
T ss_pred             cEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceE
Confidence            4   68889999999999998887632211100                        0000           01123788


Q ss_pred             cCCCCEEEEeeCC---------------------------------------------CeEEEEEeeecccccCCCCCCC
Q psy11529        156 HPNNHLLGCGSTD---------------------------------------------FKVRVFSAYIKDIESAPQSTNW  190 (244)
Q Consensus       156 ~p~~~~l~~~~~d---------------------------------------------g~i~i~d~~~~~~~~~~~~~~~  190 (244)
                      +|+..++++...+                                             |.|+.||+              
T Consensus       397 dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~--------------  462 (689)
T 1yiq_A          397 NPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDP--------------  462 (689)
T ss_dssp             ETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEET--------------
T ss_pred             CCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEEC--------------
Confidence            9988887776433                                             55666666              


Q ss_pred             CccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCCC
Q psy11529        191 GSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQV  242 (244)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~  242 (244)
                          .+++.+-.+..+    .+...-.+...+.+++.++.||.++.||.++-
T Consensus       463 ----~tG~~~W~~~~~----~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG  506 (689)
T 1yiq_A          463 ----VKQQAAWEVPYV----TIFNGGTLSTAGNLVFEGSADGRVIAYAADTG  506 (689)
T ss_dssp             ----TTTEEEEEEEES----SSCCCCEEEETTTEEEEECTTSEEEEEETTTC
T ss_pred             ----CCCCeEeEccCC----CCccCccceECCCEEEEECCCCcEEEEECCCC
Confidence                667777666553    23333456667889999999999999998864

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.91  E-value=2.1e-07  Score=69.38  Aligned_cols=188  Identities=10%  Similarity=-0.013  Sum_probs=114.4

Q ss_pred             ceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCCCCC
Q psy11529         11 PVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKK   90 (244)
Q Consensus        11 ~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~   90 (244)
                      .+.++...+++. +.+++.++.|..++..+     +....+......+.++...+++...+. +  +.+..+|  . +++
T Consensus       138 ~~~~~~~~~~g~-l~vgt~~~~l~~~d~~g-----~~~~~~~~~~~~~~~~~~d~~g~l~v~-t--~~l~~~d--~-~g~  205 (330)
T 3hxj_A          138 IYATPIVSEDGT-IYVGSNDNYLYAINPDG-----TEKWRFKTNDAITSAASIGKDGTIYFG-S--DKVYAIN--P-DGT  205 (330)
T ss_dssp             CCSCCEECTTSC-EEEECTTSEEEEECTTS-----CEEEEEECSSCCCSCCEECTTCCEEEE-S--SSEEEEC--T-TSC
T ss_pred             eeeeeEEcCCCE-EEEEcCCCEEEEECCCC-----CEeEEEecCCCceeeeEEcCCCEEEEE-e--CEEEEEC--C-CCc
Confidence            344555666666 44566778899998874     344444444556677778777775544 4  7788888  3 444


Q ss_pred             ceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEeeCCCe
Q psy11529         91 WKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFK  170 (244)
Q Consensus        91 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~  170 (244)
                      ..  .........+.++...+++. +.+++.++.+..++. ++...   ... ......+..+...+++ .|..++.+|.
T Consensus       206 ~~--~~~~~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~-~g~~~---~~~-~~~~~~~~~~~~~~~g-~l~v~t~~gg  276 (330)
T 3hxj_A          206 EK--WNFYAGYWTVTRPAISEDGT-IYVTSLDGHLYAINP-DGTEK---WRF-KTGKRIESSPVIGNTD-TIYFGSYDGH  276 (330)
T ss_dssp             EE--EEECCSSCCCSCCEECTTSC-EEEEETTTEEEEECT-TSCEE---EEE-ECSSCCCSCCEECTTS-CEEEECTTCE
T ss_pred             EE--EEEccCCcceeceEECCCCe-EEEEcCCCeEEEECC-CCCEe---EEe-eCCCCccccceEcCCC-eEEEecCCCC
Confidence            22  22223345677888888765 555666777777753 33321   111 1222333445555566 5666778888


Q ss_pred             EEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCCC
Q psy11529        171 VRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQV  242 (244)
Q Consensus       171 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~  242 (244)
                      |..+|.                   .++.+..+...   ...+.++...++|++ ..++.+|.+++...+..
T Consensus       277 l~~~d~-------------------~g~~~~~~~~~---~~~~~~~~~d~~g~l-~~gt~~G~~~~~~~~~~  325 (330)
T 3hxj_A          277 LYAINP-------------------DGTEKWNFETG---SWIIATPVIDENGTI-YFGTRNGKFYALFNLEH  325 (330)
T ss_dssp             EEEECT-------------------TSCEEEEEECS---SCCCSCCEECTTCCE-EEECTTSCEEEEEC---
T ss_pred             EEEECC-------------------CCcEEEEEEcC---CccccceEEcCCCEE-EEEcCCCeEEEEecccc
Confidence            888884                   34555555544   556777788788874 45778999999876654

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.91  E-value=4.7e-07  Score=65.09  Aligned_cols=166  Identities=8%  Similarity=-0.026  Sum_probs=103.9

Q ss_pred             eeeeeeccCCC--ceEEEEeCCCCCeEEEEeC--CccEEEEeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEee-
Q psy11529         46 SQLDVLDGHDL--KVTGIDWAPNTNRIVTCSA--DRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGS-  120 (244)
Q Consensus        46 ~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-  120 (244)
                      +.+.++. |..  ....+.|++++..+++.+.  ++.|.++|  ..+++......+.. ......+++.  +..|+.++ 
T Consensus        10 ~vv~~~p-~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD--~~tg~v~~~i~l~~-~~fgeGi~~~--g~~lyv~t~   83 (266)
T 2iwa_A           10 EVLNEFP-HDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVA--LQTGKVENIHKMDD-SYFGEGLTLL--NEKLYQVVW   83 (266)
T ss_dssp             EEEEEEE-CCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEE--TTTCCEEEEEECCT-TCCEEEEEEE--TTEEEEEET
T ss_pred             eEEEEEE-CCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEE--CCCCCEEEEEecCC-CcceEEEEEe--CCEEEEEEe
Confidence            4455554 543  3589999998755554443  57999999  88888665544322 2222345554  44555544 


Q ss_pred             CCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCcccccccee
Q psy11529        121 GARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCL  200 (244)
Q Consensus       121 ~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  200 (244)
                      .++.+.++|..+.+.   ......+ ...  ...+++||+.++++..+++|.++|.                  .+.+..
T Consensus        84 ~~~~v~viD~~t~~v---~~~i~~g-~~~--g~glt~Dg~~l~vs~gs~~l~viD~------------------~t~~v~  139 (266)
T 2iwa_A           84 LKNIGFIYDRRTLSN---IKNFTHQ-MKD--GWGLATDGKILYGSDGTSILYEIDP------------------HTFKLI  139 (266)
T ss_dssp             TCSEEEEEETTTTEE---EEEEECC-SSS--CCEEEECSSSEEEECSSSEEEEECT------------------TTCCEE
T ss_pred             cCCEEEEEECCCCcE---EEEEECC-CCC--eEEEEECCCEEEEECCCCeEEEEEC------------------CCCcEE
Confidence            588999999887754   2222222 111  2345668887777777889999998                  455555


Q ss_pred             EEecCCCC--CCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCCC
Q psy11529        201 VELNNSSS--GGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQV  242 (244)
Q Consensus       201 ~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~  242 (244)
                      ..+.....  .-..++.+.|. +|+..+....++.|.+.|..+.
T Consensus       140 ~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg  182 (266)
T 2iwa_A          140 KKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARISAKDG  182 (266)
T ss_dssp             EEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTC
T ss_pred             EEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEECCCC
Confidence            55543100  01246788888 7766555556789999998765

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.86  E-value=1e-05  Score=60.95  Aligned_cols=199  Identities=10%  Similarity=0.084  Sum_probs=117.8

Q ss_pred             EeCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEE-eCCccEEEEee
Q psy11529          6 SFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTC-SADRNAYVWTQ   84 (244)
Q Consensus         6 ~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~iwd~   84 (244)
                      .+..+..+|.+..++. .|+.+. ...|+..++.+  .  .....+. .......++|++....|+.+ ...+.|..++ 
T Consensus        30 ~l~~d~~~C~~~~~~~-~ll~~~-~~~I~~i~~~g--~--~~~~~~~-~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~-  101 (349)
T 3v64_C           30 ELRPDRRSCKALGPEP-VLLFAN-RIDIRQVLPHR--S--EYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRAN-  101 (349)
T ss_dssp             EECTTSSCEEESSSCC-EEEEEC-BSCEEEECTTS--C--CEEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEE-
T ss_pred             cCCCCCCcccccccCc-eeEeec-ccceEEEeCCC--C--eeEEeec-CCCceEEEEEeccccEEEEEeccCCceEEEe-
Confidence            3445556676666643 444443 35687778766  3  2222233 33457899999866665554 4567888888 


Q ss_pred             eCCCCCceeeEEEeccCcceEEEEECCCCCeE-EEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEE
Q psy11529         85 NNDDKKWKPTLVLLRINRAATCVKWSPLENKF-AAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLG  163 (244)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~  163 (244)
                       ........ . ..........+++.+.+..| ++-...+.|.+.+++....    .......-.....++++|.+..|+
T Consensus       102 -~~g~~~~~-~-~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~----~~l~~~~l~~P~~iavdp~~g~ly  174 (349)
T 3v64_C          102 -LNGSNVEE-V-VSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR----KVLLWQSLEKPRAIALHPMEGTIY  174 (349)
T ss_dssp             -TTSCSCEE-E-ECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC----EEEECTTCSCEEEEEEETTTTEEE
T ss_pred             -cCCCCceE-E-EeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCce----EEEEeCCCCCcceEEEecCcCeEE
Confidence             55544221 1 22223456788998765555 4444567898888776543    222223335678999999665555


Q ss_pred             Eee-CC-CeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEee-CCCcEEEEeCC
Q psy11529        164 CGS-TD-FKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTS-HDGSINVRMSQ  240 (244)
Q Consensus       164 ~~~-~d-g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~vwd~~  240 (244)
                      ... .. +.|..+++.                   +.....+....  -.....++++|++..|+.+. ..+.|..+|+.
T Consensus       175 ~td~~~~~~I~r~~~d-------------------G~~~~~~~~~~--~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~d  233 (349)
T 3v64_C          175 WTDWGNTPRIEASSMD-------------------GSGRRIIADTH--LFWPNGLTIDYAGRRMYWVDAKHHVIERANLD  233 (349)
T ss_dssp             EEECSSSCEEEEEETT-------------------SCSCEESCCSS--CSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             EeccCCCCEEEEEeCC-------------------CCCcEEEEECC--CCCcceEEEeCCCCEEEEEECCCCEEEEEeCC
Confidence            443 34 678888762                   22222222110  44578999998777666554 45678888865

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.85  E-value=5.4e-06  Score=61.29  Aligned_cols=191  Identities=13%  Similarity=0.025  Sum_probs=108.4

Q ss_pred             CCceEEEEEcCCCCeEEEecCCC--eEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeC
Q psy11529          9 INPVTTHAWNNTRQQLAFTPNNQ--EVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNN   86 (244)
Q Consensus         9 ~~~v~~~~~~~~~~~l~~~~~d~--~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~   86 (244)
                      ......+++.++|+++++....+  .|..++..+  +....+..+. .......++..+++..+++-..++.|..+|  .
T Consensus        71 ~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~--g~~~~~~~~~-~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d--~  145 (306)
T 2p4o_A           71 EGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSD--GTVETLLTLP-DAIFLNGITPLSDTQYLTADSYRGAIWLID--V  145 (306)
T ss_dssp             SSEEEEEEECTTSCEEEEEECTTSCEEEEEECTT--SCEEEEEECT-TCSCEEEEEESSSSEEEEEETTTTEEEEEE--T
T ss_pred             CCCceeEEEcCCCcEEEEeccCCcceEEEEcCCC--CeEEEEEeCC-CccccCcccccCCCcEEEEECCCCeEEEEe--C
Confidence            34677899999999666553322  466666555  4333333332 122335555555554455444578888888  5


Q ss_pred             CCCCceeeEEE--------eccCcceEEEEECCCCCeEEEee-CCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecC
Q psy11529         87 DDKKWKPTLVL--------LRINRAATCVKWSPLENKFAAGS-GARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHP  157 (244)
Q Consensus        87 ~~~~~~~~~~~--------~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p  157 (244)
                      ..++.......        ...-...+.+  +|+++.|+++. ..+.|..++++.............  ......+++++
T Consensus       146 ~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~--~~~P~gi~vd~  221 (306)
T 2p4o_A          146 VQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE--QTNIDDFAFDV  221 (306)
T ss_dssp             TTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE--SCCCSSEEEBT
T ss_pred             CCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec--cCCCCCeEECC
Confidence            44321111000        0011234455  77887666654 477899999875211100111111  13467789999


Q ss_pred             CCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCcccccccee--EEecCCCCCCCCeEEEEEe---cCCCEEEEeeC
Q psy11529        158 NNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCL--VELNNSSSGGGWIHSVAFS---KDGNKLCWTSH  230 (244)
Q Consensus       158 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~v~~~~~s---~~~~~l~~~~~  230 (244)
                      +|+++++....+.|.++|.                   .++..  ..+...   ....++++|.   |+++.|+..+.
T Consensus       222 dG~l~va~~~~~~V~~~~~-------------------~G~~~~~~~~~~~---~~~p~~~a~~g~~~d~~~LyVt~~  277 (306)
T 2p4o_A          222 EGNLYGATHIYNSVVRIAP-------------------DRSTTIIAQAEQG---VIGSTAVAFGQTEGDCTAIYVVTN  277 (306)
T ss_dssp             TCCEEEECBTTCCEEEECT-------------------TCCEEEEECGGGT---CTTEEEEEECCSTTTTTEEEEEEC
T ss_pred             CCCEEEEeCCCCeEEEECC-------------------CCCEEEEeecccc---cCCceEEEEecccCCCCEEEEECC
Confidence            9988777777889999985                   24432  223332   3568999999   88776665543

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.83  E-value=8.6e-06  Score=58.22  Aligned_cols=170  Identities=11%  Similarity=0.124  Sum_probs=108.6

Q ss_pred             eeccCCCceEEEEeCCCCCeEEE-EeCCccEEEEeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEE
Q psy11529         50 VLDGHDLKVTGIDWAPNTNRIVT-CSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVC  128 (244)
Q Consensus        50 ~~~~~~~~v~~~~~~~~~~~l~~-~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~  128 (244)
                      .+.+-...+..++|+|++..|++ ...++.|...|  .. ++......+ ........+++.+++.++++.-.++.+.++
T Consensus        21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld--~~-g~v~~~i~l-~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~   96 (255)
T 3qqz_A           21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMT--TN-GDLIRTIPL-DFVKDLETIEYIGDNQFVISDERDYAIYVI   96 (255)
T ss_dssp             ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEE--TT-CCEEEEEEC-SSCSSEEEEEECSTTEEEEEETTTTEEEEE
T ss_pred             ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEe--CC-CCEEEEEec-CCCCChHHeEEeCCCEEEEEECCCCcEEEE
Confidence            45555667999999997665554 56678888888  55 664444432 333678899999988876776678889999


Q ss_pred             EeecCCCceEEEeee-----cCCCCceeEEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEe
Q psy11529        129 YFESENDWWVAKHIK-----KPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVEL  203 (244)
Q Consensus       129 d~~~~~~~~~~~~~~-----~~~~~~v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (244)
                      ++.............     .+.+.....++|+|+++.|.++.+.....+|.+..  ..             ....+..+
T Consensus        97 ~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g--~~-------------~~~~l~i~  161 (255)
T 3qqz_A           97 SLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNG--LL-------------SSNELHIS  161 (255)
T ss_dssp             EECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEES--TT-------------CSSCCEEE
T ss_pred             EcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcc--cc-------------cCCceeee
Confidence            987765422222221     12345678999999998777777766666776631  00             00011111


Q ss_pred             -----c--CCCCCCCCeEEEEEecC-CCEEEEeeCCCcEEEEeCCC
Q psy11529        204 -----N--NSSSGGGWIHSVAFSKD-GNKLCWTSHDGSINVRMSQQ  241 (244)
Q Consensus       204 -----~--~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~vwd~~~  241 (244)
                           .  ..   ...+.+++++|. +++++.+..+..+.++|.+-
T Consensus       162 ~~~~~~~~~~---~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g  204 (255)
T 3qqz_A          162 KDKALQRQFT---LDDVSGAEFNQQKNTLLVLSHESRALQEVTLVG  204 (255)
T ss_dssp             ECHHHHHTCC---SSCCCEEEEETTTTEEEEEETTTTEEEEECTTC
T ss_pred             cchhhccccc---cCCceeEEEcCCCCeEEEEECCCCeEEEEcCCC
Confidence                 0  11   345789999994 45556666667777777653

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.82  E-value=3.3e-06  Score=65.50  Aligned_cols=155  Identities=12%  Similarity=0.134  Sum_probs=95.6

Q ss_pred             ceEEEEEcC-CCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeC-Cc----cEEEEee
Q psy11529         11 PVTTHAWNN-TRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSA-DR----NAYVWTQ   84 (244)
Q Consensus        11 ~v~~~~~~~-~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~----~i~iwd~   84 (244)
                      ....++++| ++..|.++...+.|+.+++.+  +   .+..+.........++|++++++|+.+.. ++    .+...+ 
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~--~---~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~-  211 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEK--E---YVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILT-  211 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTT--T---EEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEE-
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCC--C---EEEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEe-
Confidence            446789998 355555554447888898876  3   33333334566789999999996666554 11    233344 


Q ss_pred             eCCCCCceeeEEEeccCcceEEEEECC-CCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEE
Q psy11529         85 NNDDKKWKPTLVLLRINRAATCVKWSP-LENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLG  163 (244)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~  163 (244)
                        ..+.......+. .......++++| ++.++++-..++.|..++.+....   ......+.......++|+|+|++|+
T Consensus       212 --~~g~~~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~---~~~~~~~~~~~P~gia~~pdG~~ly  285 (430)
T 3tc9_A          212 --RESGFKVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQET---TPLFTIQDSGWEFHIQFHPSGNYAY  285 (430)
T ss_dssp             --GGGTSCSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEE---EEEEECSSSSCCEEEEECTTSSEEE
T ss_pred             --CCCceeeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcE---EEEEEcCCCCcceeEEEcCCCCEEE
Confidence              333332112222 234567889999 566555555678888888765432   1112222224578999999999554


Q ss_pred             E-eeCCCeEEEEEee
Q psy11529        164 C-GSTDFKVRVFSAY  177 (244)
Q Consensus       164 ~-~~~dg~i~i~d~~  177 (244)
                      . -...+.|..++..
T Consensus       286 v~d~~~~~I~~~~~d  300 (430)
T 3tc9_A          286 IVVVNQHYILRSDYD  300 (430)
T ss_dssp             EEETTTTEEEEEEEE
T ss_pred             EEECCCCEEEEEeCC
Confidence            4 4467789998874

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.81  E-value=8e-07  Score=66.19  Aligned_cols=176  Identities=11%  Similarity=-0.006  Sum_probs=108.5

Q ss_pred             CCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCCCCCceeeEEEecc
Q psy11529         21 RQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRI  100 (244)
Q Consensus        21 ~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~  100 (244)
                      +..+.+++.++.|..++..+     +...........+.++...+++. +..++.++.+..+|  .. ++......  ..
T Consensus       107 ~~~l~v~t~~~~l~~~d~~g-----~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d--~~-g~~~~~~~--~~  175 (330)
T 3hxj_A          107 EDILYVTSMDGHLYAINTDG-----TEKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAIN--PD-GTEKWRFK--TN  175 (330)
T ss_dssp             TTEEEEECTTSEEEEECTTS-----CEEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEEC--TT-SCEEEEEE--CS
T ss_pred             CCEEEEEecCCEEEEEcCCC-----CEEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEEC--CC-CCEeEEEe--cC
Confidence            44566677788899888764     33444444445566677777776 55567788999999  66 65433332  23


Q ss_pred             CcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEeeCCCeEEEEEeeecc
Q psy11529        101 NRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKD  180 (244)
Q Consensus       101 ~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~  180 (244)
                      ...+.++...+++..++ ++  +.+..+| .+++.    ..........+.++...++|. |..++.++.|..+|.    
T Consensus       176 ~~~~~~~~~d~~g~l~v-~t--~~l~~~d-~~g~~----~~~~~~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~----  242 (330)
T 3hxj_A          176 DAITSAASIGKDGTIYF-GS--DKVYAIN-PDGTE----KWNFYAGYWTVTRPAISEDGT-IYVTSLDGHLYAINP----  242 (330)
T ss_dssp             SCCCSCCEECTTCCEEE-ES--SSEEEEC-TTSCE----EEEECCSSCCCSCCEECTTSC-EEEEETTTEEEEECT----
T ss_pred             CCceeeeEEcCCCEEEE-Ee--CEEEEEC-CCCcE----EEEEccCCcceeceEECCCCe-EEEEcCCCeEEEECC----
Confidence            44566777777776544 44  6788888 55443    122222335677888888875 445667777888863    


Q ss_pred             cccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeC
Q psy11529        181 IESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMS  239 (244)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~  239 (244)
                                     .++.+..+...   ...+..+...+++. |..++.+|.|..+|.
T Consensus       243 ---------------~g~~~~~~~~~---~~~~~~~~~~~~g~-l~v~t~~ggl~~~d~  282 (330)
T 3hxj_A          243 ---------------DGTEKWRFKTG---KRIESSPVIGNTDT-IYFGSYDGHLYAINP  282 (330)
T ss_dssp             ---------------TSCEEEEEECS---SCCCSCCEECTTSC-EEEECTTCEEEEECT
T ss_pred             ---------------CCCEeEEeeCC---CCccccceEcCCCe-EEEecCCCCEEEECC
Confidence                           34444444443   33344555655664 555667777888875

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.79  E-value=2.2e-07  Score=70.32  Aligned_cols=127  Identities=10%  Similarity=-0.124  Sum_probs=87.5

Q ss_pred             eEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEe----------CCccEEEEeeeCCCCCceeeEEEecc-
Q psy11529         32 EVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCS----------ADRNAYVWTQNNDDKKWKPTLVLLRI-  100 (244)
Q Consensus        32 ~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~d~~i~iwd~~~~~~~~~~~~~~~~~-  100 (244)
                      .|.++|..+  .  +.+.++.....+  .+.++|++++++.+.          .++.|.+||  ..+++....+...+. 
T Consensus        47 ~vsvID~~t--~--~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD--~~T~~vv~~I~v~~~~  118 (368)
T 1mda_H           47 ENWVSCAGC--G--VTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFD--PVTFLPIADIELPDAP  118 (368)
T ss_dssp             EEEEEETTT--T--EEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEEC--TTTCCEEEEEEETTSC
T ss_pred             eEEEEECCC--C--eEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEE--CCCCCEEEEEECCCcc
Confidence            888999877  4  677777655555  799999999988876          378999999  888886655543211 


Q ss_pred             ----CcceEEEEECCCCCeEEEeeC--CCeEEE--EEeecCCCceEEEeeecCCCCceeEEEecCCCC-EEEEeeCCCeE
Q psy11529        101 ----NRAATCVKWSPLENKFAAGSG--ARLISV--CYFESENDWWVAKHIKKPIKSTITCLDWHPNNH-LLGCGSTDFKV  171 (244)
Q Consensus       101 ----~~~v~~~~~~~~~~~l~~~~~--d~~i~i--~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~-~l~~~~~dg~i  171 (244)
                          ......++++|||++++++..  +..+.+  +|..+  .    .....+.  .   ..+.|+++ .+++.+.||++
T Consensus       119 ~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t--v----~~i~v~~--~---~~~~p~g~~~~~~~~~dg~~  187 (368)
T 1mda_H          119 RFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD--D----QLTKSAS--C---FHIHPGAAATHYLGSCPASL  187 (368)
T ss_dssp             SCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE--E----EEEECSS--C---CCCEEEETTEEECCCCTTSC
T ss_pred             ccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh--c----eEEECCC--c---eEEccCCCeEEEEEcCCCCE
Confidence                134668999999999999874  467888  88776  1    1121111  1   22445553 44556678888


Q ss_pred             EEEEee
Q psy11529        172 RVFSAY  177 (244)
Q Consensus       172 ~i~d~~  177 (244)
                      .+.|+.
T Consensus       188 ~~vd~~  193 (368)
T 1mda_H          188 AASDLA  193 (368)
T ss_dssp             EEEECC
T ss_pred             EEEECc
Confidence            888873

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.77  E-value=1.6e-06  Score=61.75  Aligned_cols=164  Identities=10%  Similarity=-0.014  Sum_probs=100.5

Q ss_pred             eeeeeeccCCC--ceEEEEeCCCCCeEEEEeCCc--cEEEEeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEee-
Q psy11529         46 SQLDVLDGHDL--KVTGIDWAPNTNRIVTCSADR--NAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGS-  120 (244)
Q Consensus        46 ~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-  120 (244)
                      +.+.++. |..  -...+.|+ ++.++.+.+.+|  .|+.+|  +++++......+   ..........+++..|+... 
T Consensus        32 ~vv~~~p-hd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD--~~Tgkv~~~~~l---~~~~FgeGit~~g~~ly~ltw  104 (262)
T 3nol_A           32 QIVHSYP-HDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVD--IESGKTLQQIEL---GKRYFGEGISDWKDKIVGLTW  104 (262)
T ss_dssp             EEEEEEE-CCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEEC--TTTCCEEEEEEC---CTTCCEEEEEEETTEEEEEES
T ss_pred             EEEEEec-CCCCcccceEEEE-CCEEEEECCCCCCceEEEEE--CCCCcEEEEEec---CCccceeEEEEeCCEEEEEEe
Confidence            3444553 543  34789998 666666666655  899999  889986655543   23333322223445555554 


Q ss_pred             CCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCcccccccee
Q psy11529        121 GARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCL  200 (244)
Q Consensus       121 ~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  200 (244)
                      .++.+.+||.++.+.   ......+.    ....++++++.|+.+..+++|.++|.                  .+.+.+
T Consensus       105 ~~~~v~v~D~~t~~~---~~ti~~~~----eG~glt~dg~~L~~SdGs~~i~~iDp------------------~T~~v~  159 (262)
T 3nol_A          105 KNGLGFVWNIRNLRQ---VRSFNYDG----EGWGLTHNDQYLIMSDGTPVLRFLDP------------------ESLTPV  159 (262)
T ss_dssp             SSSEEEEEETTTCCE---EEEEECSS----CCCCEEECSSCEEECCSSSEEEEECT------------------TTCSEE
T ss_pred             eCCEEEEEECccCcE---EEEEECCC----CceEEecCCCEEEEECCCCeEEEEcC------------------CCCeEE
Confidence            588999999988875   22222222    22344467777777766788999998                  455555


Q ss_pred             EEecCCC--CCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCCC
Q psy11529        201 VELNNSS--SGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQV  242 (244)
Q Consensus       201 ~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~  242 (244)
                      ..+....  ..-..++.+.|. +|+..+..-.+..|.+.|.++.
T Consensus       160 ~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG  202 (262)
T 3nol_A          160 RTITVTAHGEELPELNELEWV-DGEIFANVWQTNKIVRIDPETG  202 (262)
T ss_dssp             EEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTC
T ss_pred             EEEEeccCCccccccceeEEE-CCEEEEEEccCCeEEEEECCCC
Confidence            5554310  001345567876 7766655556778888887653

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=98.75  E-value=9e-06  Score=59.93  Aligned_cols=159  Identities=9%  Similarity=0.079  Sum_probs=102.9

Q ss_pred             eEEEEEcCCCCeEEEec-CCCeEEEeeeccCCCcceeeeeecc----C--CCceEEEEe---CCCCCeEEEEe-------
Q psy11529         12 VTTHAWNNTRQQLAFTP-NNQEVHLYQYEKAANDWSQLDVLDG----H--DLKVTGIDW---APNTNRIVTCS-------   74 (244)
Q Consensus        12 v~~~~~~~~~~~l~~~~-~d~~v~v~~~~~~~~~~~~~~~~~~----~--~~~v~~~~~---~~~~~~l~~~~-------   74 (244)
                      -.+++|++....|..++ ..+.|..|+..+  +....+ .+.+    .  ...+..+.|   .|+++++++..       
T Consensus        15 PE~~~wd~~~g~~~vs~l~~g~V~~~~~~~--~~~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~   91 (334)
T 2p9w_A           15 PEDTIYDRTRQVFYQSNLYKGRIEVYNPKT--QSHFNV-VIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNF   91 (334)
T ss_dssp             CSCEEEETTTTEEEEEETTTTEEEEECTTT--CCEEEE-CCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCT
T ss_pred             CcCccCcCCCCEEEEEeccCCEEEEEcCCC--CeEEEE-ecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccc
Confidence            34788988655555555 689999999875  322223 3332    1  124689999   68877776533       


Q ss_pred             ------CCccEEEEeeeCC---CCCceeeEEEecc-----------CcceEEEEECCCCCeEEEeeCC-CeEEEEEeecC
Q psy11529         75 ------ADRNAYVWTQNND---DKKWKPTLVLLRI-----------NRAATCVKWSPLENKFAAGSGA-RLISVCYFESE  133 (244)
Q Consensus        75 ------~d~~i~iwd~~~~---~~~~~~~~~~~~~-----------~~~v~~~~~~~~~~~l~~~~~d-~~i~i~d~~~~  133 (244)
                            .+..+..+|  +.   +++......+...           ...+..++..++|+..++++.. +.|...+.+..
T Consensus        92 ~g~~~~g~~~v~~~D--l~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~  169 (334)
T 2p9w_A           92 ADQSSHGASSFHSFN--LPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGK  169 (334)
T ss_dssp             TSCCSSSCCEEEEEE--SSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSC
T ss_pred             cccccCCCCEEEEEc--CCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCC
Confidence                  157788999  66   5665444443221           1248899999999999988877 76555444333


Q ss_pred             CCceEEEeee---cCCCCceeEEEecCCCCEEEEeeCCCeEEEEEee
Q psy11529        134 NDWWVAKHIK---KPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAY  177 (244)
Q Consensus       134 ~~~~~~~~~~---~~~~~~v~~~~~~p~~~~l~~~~~dg~i~i~d~~  177 (244)
                      ..  ......   .......+.|+++|+|+.|++....|.|..+|+.
T Consensus       170 ~~--~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~  214 (334)
T 2p9w_A          170 TV--STFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVS  214 (334)
T ss_dssp             CE--EEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECS
T ss_pred             EE--eeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCC
Confidence            11  111111   1122357899999999988887779999999985

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.75  E-value=9.3e-06  Score=63.06  Aligned_cols=220  Identities=10%  Similarity=0.038  Sum_probs=115.0

Q ss_pred             CceEEEEEcCCCCeEEEecCC---C-eEEEeeeccCCCcceeeeeeccCCCceEEEEeCC-CCCeEEEEeCCccEEEEee
Q psy11529         10 NPVTTHAWNNTRQQLAFTPNN---Q-EVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAP-NTNRIVTCSADRNAYVWTQ   84 (244)
Q Consensus        10 ~~v~~~~~~~~~~~l~~~~~d---~-~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~   84 (244)
                      .....++++++|+++++....   . .+...+...  + +.....+. .-.....++++| ++.++++-..++.|+.+| 
T Consensus       182 ~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~--~-~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d-  256 (433)
T 4hw6_A          182 GQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRAS--G-FTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYD-  256 (433)
T ss_dssp             SCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGG--T-TCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEEC-
T ss_pred             CCccEEEECCCCCEEEEcCCCCcccceEEEEECCC--C-eecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEE-
Confidence            457889999999954443311   1 233333322  1 11111222 223346788999 666665655678899988 


Q ss_pred             eCCCCCceeeEEEeccCcceEEEEECCCCCeEEEee-CCCeEEEEEeecCCCce----EEEeeec--C---------CCC
Q psy11529         85 NNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGS-GARLISVCYFESENDWW----VAKHIKK--P---------IKS  148 (244)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~----~~~~~~~--~---------~~~  148 (244)
                       ..++.....+...........++|+|+++.|+.+. ..+.|+.++++......    .......  +         .-.
T Consensus       257 -~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~  335 (433)
T 4hw6_A          257 -PATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLW  335 (433)
T ss_dssp             -TTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCS
T ss_pred             -CCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEc
Confidence             66665412222122223345799999999665554 46789888876432100    0000000  0         112


Q ss_pred             ceeEEEe---------cCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEe
Q psy11529        149 TITCLDW---------HPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFS  219 (244)
Q Consensus       149 ~v~~~~~---------~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  219 (244)
                      ....+++         .++|+++++-...+.|+.++.. ..+........   ....+..-...... ..-.....++++
T Consensus       336 ~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~~-G~v~t~~G~g~---~~~~G~~dG~~~~~-~~~~~P~giavd  410 (433)
T 4hw6_A          336 GPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTPE-GRVTTYAGRGN---SREWGYVDGELRSQ-ALFNHPTSIAYD  410 (433)
T ss_dssp             SEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECTT-SEEEEEECCCT---TCSSCCBCEETTTT-CBCSSEEEEEEE
T ss_pred             CCccEEEEccccccccCCCCcEEEEECCCCEEEEECCC-CCEEEEEeCCC---CCccccCCCccccc-cEeCCCcEEEEE
Confidence            4567888         6777777766667788888741 11110000000   00000000000000 002346889999


Q ss_pred             -cCCCEEEEeeCCCcEEEEeCC
Q psy11529        220 -KDGNKLCWTSHDGSINVRMSQ  240 (244)
Q Consensus       220 -~~~~~l~~~~~dg~i~vwd~~  240 (244)
                       ++|.++++=.....|+.++++
T Consensus       411 ~~~g~lyVaD~~n~rIr~i~~e  432 (433)
T 4hw6_A          411 MKRKCFYIGDCDNHRVRKIAPE  432 (433)
T ss_dssp             TTTTEEEEEEGGGTEEEEEEEC
T ss_pred             CCCCEEEEEeCCCCEEEEEecC
Confidence             677766666667889988875

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.75  E-value=1.8e-05  Score=58.83  Aligned_cols=197  Identities=11%  Similarity=0.054  Sum_probs=117.2

Q ss_pred             CCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCC----CCe--E-EEEe-C--CccEEEEeeeCCCCC
Q psy11529         21 RQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPN----TNR--I-VTCS-A--DRNAYVWTQNNDDKK   90 (244)
Q Consensus        21 ~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~--l-~~~~-~--d~~i~iwd~~~~~~~   90 (244)
                      ..+++.....+-+.+||+.+     +.++.+..  +.++.+..-|+    |+.  + ++.. .  +++|.+|+++..++.
T Consensus        40 ~s~ii~t~k~~gL~Vydl~G-----~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~  112 (355)
T 3amr_A           40 NSKLITTNKKSGLVVYSLDG-----KMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT  112 (355)
T ss_dssp             GCEEEEEETTTEEEEEETTS-----CEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC
T ss_pred             ccEEEEEcCCCCEEEEcCCC-----cEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc
Confidence            34555556678899999976     67777653  56777766652    322  3 3333 3  578999984334443


Q ss_pred             ceeeEE----EeccCcceEEEEE--CCC-CC-eEEEeeCCCeEEEEEeecCC---CceEEEeeecCCCCceeEEEecCCC
Q psy11529         91 WKPTLV----LLRINRAATCVKW--SPL-EN-KFAAGSGARLISVCYFESEN---DWWVAKHIKKPIKSTITCLDWHPNN  159 (244)
Q Consensus        91 ~~~~~~----~~~~~~~v~~~~~--~~~-~~-~l~~~~~d~~i~i~d~~~~~---~~~~~~~~~~~~~~~v~~~~~~p~~  159 (244)
                      ......    .......+..+++  +|. +. ++++...++.+..|++....   ........ ....+.+..+...+..
T Consensus       113 l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~-f~lgsq~EgcvvDd~~  191 (355)
T 3amr_A          113 LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRA-FKMNSQTEGMAADDEY  191 (355)
T ss_dssp             EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEE-EECSSCEEEEEEETTT
T ss_pred             eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEE-ecCCCCcceEEEcCCC
Confidence            211100    0011155666777  775 44 57778889999999985421   11111122 2223678899999988


Q ss_pred             CEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEec-CCCCCCCCeEEEEE--ecCCC-EEEEee-CCCcE
Q psy11529        160 HLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELN-NSSSGGGWIHSVAF--SKDGN-KLCWTS-HDGSI  234 (244)
Q Consensus       160 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~--s~~~~-~l~~~~-~dg~i  234 (244)
                      ..|+.+-++.-|..|+.+....             .+.+.+..+. ++.  ...+..|++  .++++ ||++++ .+.+.
T Consensus       192 g~Lyv~eEd~GIw~~da~p~~~-------------~~~~~v~~~~~g~l--~aDvEGLai~~~~~g~gyLivSsQG~~s~  256 (355)
T 3amr_A          192 GRLYIAEEDEAIWKFSAEPDGG-------------SNGTVIDRADGRHL--TRDIEGLTIYYAADGKGYLMASSQGNSSY  256 (355)
T ss_dssp             TEEEEEETTTEEEEEECSTTSC-------------SCCEEEEEBSSSSB--CSCEEEEEEEECGGGCEEEEEEEGGGTEE
T ss_pred             CeEEEecccceEEEEeCCcCCC-------------CCceEEEEecCCcc--ccCcceEEEEecCCCCEEEEEEcCCCCEE
Confidence            8999998886655555421100             1234444442 221  346888888  45666 666665 57799


Q ss_pred             EEEeCC
Q psy11529        235 NVRMSQ  240 (244)
Q Consensus       235 ~vwd~~  240 (244)
                      .+||.+
T Consensus       257 ~Vydr~  262 (355)
T 3amr_A          257 AIYDRQ  262 (355)
T ss_dssp             EEEESS
T ss_pred             EEEECC
Confidence            999986

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.73  E-value=6.4e-07  Score=73.36  Aligned_cols=73  Identities=12%  Similarity=0.162  Sum_probs=49.5

Q ss_pred             EEEEcCCCCeEEEecC-CCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEe-CC-----ccEEEEeeeC
Q psy11529         14 THAWNNTRQQLAFTPN-NQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCS-AD-----RNAYVWTQNN   86 (244)
Q Consensus        14 ~~~~~~~~~~l~~~~~-d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d-----~~i~iwd~~~   86 (244)
                      ++++.++++++++|+. +..+.+||...  +.|..+..+..... -.+++..++++.++.|+ .+     ..+.+||  .
T Consensus       247 ~~~~~~~g~lyv~GG~~~~~v~~yd~~t--~~W~~~~~~~~~R~-~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd--~  321 (656)
T 1k3i_A          247 GISMDGNGQIVVTGGNDAKKTSLYDSSS--DSWIPGPDMQVARG-YQSSATMSDGRVFTIGGSWSGGVFEKNGEVYS--P  321 (656)
T ss_dssp             EEEECTTSCEEEECSSSTTCEEEEEGGG--TEEEECCCCSSCCS-SCEEEECTTSCEEEECCCCCSSSCCCCEEEEE--T
T ss_pred             cccCCCCCCEEEeCCCCCCceEEecCcC--CceeECCCCCcccc-ccceEEecCCeEEEEeCcccCCcccccceEeC--C
Confidence            4677789999999984 45899999987  65665544432222 23455667888888887 34     5688898  5


Q ss_pred             CCCCc
Q psy11529         87 DDKKW   91 (244)
Q Consensus        87 ~~~~~   91 (244)
                      .++++
T Consensus       322 ~t~~W  326 (656)
T 1k3i_A          322 SSKTW  326 (656)
T ss_dssp             TTTEE
T ss_pred             CCCcc
Confidence            55543

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.73  E-value=1.3e-05  Score=62.27  Aligned_cols=156  Identities=11%  Similarity=0.118  Sum_probs=89.7

Q ss_pred             ceEEEEEcCC--CCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCC---c-cEEEEee
Q psy11529         11 PVTTHAWNNT--RQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSAD---R-NAYVWTQ   84 (244)
Q Consensus        11 ~v~~~~~~~~--~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~-~i~iwd~   84 (244)
                      ....++|+|+  +..|.++...+.|+.++..+  +   .+..+.........++++++|+++++....   . .+...+ 
T Consensus       140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~--g---~v~~~~~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~-  213 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVN--Q---YVDIKTTNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFT-  213 (433)
T ss_dssp             CCCEEEECTTTTTCEEEEECBTSCEEEEETTT--T---EEEEECCCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEEC-
T ss_pred             CCceEEEccccCCCEEEEEeCCCCEEEEECCC--C---EEEEeecCCCCccEEEECCCCCEEEEcCCCCcccceEEEEE-
Confidence            3568899985  34444443338899999866  3   333444345568899999999944443211   1 233333 


Q ss_pred             eCCCCCceeeEEEeccCcceEEEEECC-CCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEE
Q psy11529         85 NNDDKKWKPTLVLLRINRAATCVKWSP-LENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLG  163 (244)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~  163 (244)
                       .. +.......+ ..-.....++++| ++.++++-..++.|+.++..++...  ..............++|+|+++.|+
T Consensus       214 -~~-~~~~~~~~~-~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~--~~~~~~~~~~~~~~ia~dpdG~~LY  288 (433)
T 4hw6_A          214 -RA-SGFTERLSL-CNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLT--EEEVMMDTKGSNFHIVWHPTGDWAY  288 (433)
T ss_dssp             -GG-GTTCCEEEE-EECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEE--EEEEECSCCSSCEEEEECTTSSEEE
T ss_pred             -CC-CCeeccccc-cccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEE--EEEeccCCCCCcccEEEeCCCCEEE
Confidence             22 222111111 1234567789999 5665555556778888877644320  1111111223345799999998555


Q ss_pred             Ee-eCCCeEEEEEee
Q psy11529        164 CG-STDFKVRVFSAY  177 (244)
Q Consensus       164 ~~-~~dg~i~i~d~~  177 (244)
                      .+ ...+.|+.++..
T Consensus       289 vad~~~~~I~~~~~d  303 (433)
T 4hw6_A          289 IIYNGKHCIYRVDYN  303 (433)
T ss_dssp             EEETTTTEEEEEEBC
T ss_pred             EEeCCCCEEEEEeCC
Confidence            44 456789988863

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.72  E-value=2.9e-05  Score=59.39  Aligned_cols=193  Identities=10%  Similarity=0.081  Sum_probs=113.0

Q ss_pred             ceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEE-eCCccEEEEeeeCCCC
Q psy11529         11 PVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTC-SADRNAYVWTQNNDDK   89 (244)
Q Consensus        11 ~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~   89 (244)
                      .-.|.+..++ .+|+.+. ...|+.+++.+  .   ....+.........++|++.+..|+.+ ...+.|..++  ....
T Consensus        78 ~~~C~~~~~~-~~l~~~~-~~~I~~i~~~~--~---~~~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~--~~g~  148 (386)
T 3v65_B           78 RRSCKALGPE-PVLLFAN-RIDIRQVLPHR--S---EYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRAN--LNGS  148 (386)
T ss_dssp             SSCEEECSSC-CEEEEEC-BSCEEEECTTS--C---CCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEE--TTSC
T ss_pred             CCeECCcccc-ceeEeec-CccceeeccCC--C---cEEEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEe--cCCC
Confidence            3445555553 3444443 45688888876  3   222222234457899999866555544 4567888888  5554


Q ss_pred             CceeeEEEeccCcceEEEEECCCCCeEEE-eeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEee-C
Q psy11529         90 KWKPTLVLLRINRAATCVKWSPLENKFAA-GSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGS-T  167 (244)
Q Consensus        90 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~-~  167 (244)
                      ... .. ..........+++.+.+..|+. -...+.|.+.+++....    .............++++|.+..|+... .
T Consensus       149 ~~~-~~-~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~----~~l~~~~l~~P~giavdp~~g~ly~td~~  222 (386)
T 3v65_B          149 NVE-EV-VSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR----KVLLWQSLEKPRAIALHPMEGTIYWTDWG  222 (386)
T ss_dssp             CEE-EE-ECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSC----EEEECSSCSCEEEEEEETTTTEEEEEECS
T ss_pred             CcE-EE-EeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCce----EEeecCCCCCCcEEEEEcCCCeEEEeccC
Confidence            321 11 1222345677888876555544 44567788877665433    222222335678999999766555544 3


Q ss_pred             C-CeEEEEEeeecccccCCCCCCCCccccccceeEEec-CCCCCCCCeEEEEEecCCCEEEEee-CCCcEEEEeCC
Q psy11529        168 D-FKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELN-NSSSGGGWIHSVAFSKDGNKLCWTS-HDGSINVRMSQ  240 (244)
Q Consensus       168 d-g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~vwd~~  240 (244)
                      . +.|..+++.                   +.....+. ..   ......++++|++..|+.+. ..+.|..+|+.
T Consensus       223 ~~~~I~r~~~d-------------------G~~~~~~~~~~---~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~d  276 (386)
T 3v65_B          223 NTPRIEASSMD-------------------GSGRRIIADTH---LFWPNGLTIDYAGRRMYWVDAKHHVIERANLD  276 (386)
T ss_dssp             SSCEEEEEETT-------------------SCSCEEEECSS---CSCEEEEEEEGGGTEEEEEETTTTEEEEECTT
T ss_pred             CCCEEEEEeCC-------------------CCCcEEEEECC---CCCeeeEEEeCCCCEEEEEECCCCEEEEEeCC
Confidence            3 678777752                   32222222 22   44578999998776665554 45678888875

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.72  E-value=9.2e-07  Score=73.56  Aligned_cols=113  Identities=10%  Similarity=0.011  Sum_probs=71.7

Q ss_pred             ceEEEEeC-CCCCeEEEEeC-C----ccEEEEeeeCCCC-CceeeEEEeccCcceEEEEECCCCCeEEEeeCC-----Ce
Q psy11529         57 KVTGIDWA-PNTNRIVTCSA-D----RNAYVWTQNNDDK-KWKPTLVLLRINRAATCVKWSPLENKFAAGSGA-----RL  124 (244)
Q Consensus        57 ~v~~~~~~-~~~~~l~~~~~-d----~~i~iwd~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~  124 (244)
                      .+...+|| |||++|+.+.. +    ..|+++|  +.++ +..... +   ......++|+||++.|+....+     ..
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~d--l~~g~~~l~~~-~---~~~~~~~~WspDg~~l~y~~~d~~~~~~~  248 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKR--ISDPSQTIADK-V---SGTNGEIVWGPDHTSLFYVTKDETLRENK  248 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEE--TTCTTCCCCCC-E---EEECSCCEECSSTTEEEEEEECTTCCEEE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEE--CCCCCEeCCcc-c---cCceeeEEEecCCCEEEEEEECCCCCCCE
Confidence            67889999 99998885543 2    3599999  7777 522111 1   1124578999999888877654     24


Q ss_pred             EEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEeeC---CCeEEEEEe
Q psy11529        125 ISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGST---DFKVRVFSA  176 (244)
Q Consensus       125 i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~---dg~i~i~d~  176 (244)
                      |..+++.+....... ............+.|+|||++|+..+.   ...|+++|+
T Consensus       249 v~~~~lgt~~~~~~l-v~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~  302 (751)
T 2xe4_A          249 VWRHVMGKLQSEDVC-LYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDL  302 (751)
T ss_dssp             EEEEETTSCGGGCEE-EEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEES
T ss_pred             EEEEECCCCchhcEE-EEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEEC
Confidence            666666554321111 111222344668899999998876653   346778887

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.70  E-value=8.5e-06  Score=61.97  Aligned_cols=144  Identities=6%  Similarity=-0.065  Sum_probs=84.5

Q ss_pred             CCeEEEecCCCeEEEeeeccCCCcceeeeeeccC---------CCce-EEEEeCCCCCeEEEEeCCccEEEEeeeCCCCC
Q psy11529         21 RQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGH---------DLKV-TGIDWAPNTNRIVTCSADRNAYVWTQNNDDKK   90 (244)
Q Consensus        21 ~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~---------~~~v-~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~   90 (244)
                      +..+++++.++.|..+|..+  +  +.+......         ...+ ..+..  ++..++.++.++.+..+|  ..+++
T Consensus        53 ~~~v~~~~~~g~v~a~d~~t--G--~~~W~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~~g~l~a~d--~~tG~  124 (376)
T 3q7m_A           53 DNVVYAADRAGLVKALNADD--G--KEIWSVSLAEKDGWFSKEPALLSGGVTV--SGGHVYIGSEKAQVYALN--TSDGT  124 (376)
T ss_dssp             TTEEEEECTTSEEEEEETTT--C--CEEEEEECCC---CCSCCCCCEEEEEEE--ETTEEEEEETTSEEEEEE--TTTCC
T ss_pred             CCEEEEEcCCCeEEEEEccC--C--ceeeeecCccccccccccCcccccCceE--eCCEEEEEcCCCEEEEEE--CCCCC
Confidence            45677777789999999876  4  333333321         1222 22222  356777788899999999  88888


Q ss_pred             ceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCC-CceeEEEecCCCCEEEEeeCCC
Q psy11529         91 WKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIK-STITCLDWHPNNHLLGCGSTDF  169 (244)
Q Consensus        91 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~-~~v~~~~~~p~~~~l~~~~~dg  169 (244)
                      ..........  .......  .+..+++++.++.+..+|.++++..|.......... .........  +..++.++.++
T Consensus       125 ~~W~~~~~~~--~~~~p~~--~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g  198 (376)
T 3q7m_A          125 VAWQTKVAGE--ALSRPVV--SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGDNG  198 (376)
T ss_dssp             EEEEEECSSC--CCSCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECCTTT
T ss_pred             EEEEEeCCCc--eEcCCEE--ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcCCC
Confidence            6544432211  1111112  145788888899999999988876443322111100 000112222  34677788899


Q ss_pred             eEEEEEeee
Q psy11529        170 KVRVFSAYI  178 (244)
Q Consensus       170 ~i~i~d~~~  178 (244)
                      .+..+|..+
T Consensus       199 ~l~~~d~~t  207 (376)
T 3q7m_A          199 RVSAVLMEQ  207 (376)
T ss_dssp             EEEEEETTT
T ss_pred             EEEEEECCC
Confidence            999999843

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.70  E-value=8.1e-06  Score=62.08  Aligned_cols=187  Identities=9%  Similarity=0.049  Sum_probs=108.2

Q ss_pred             CCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCCCCCceeeEEEec
Q psy11529         20 TRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLR   99 (244)
Q Consensus        20 ~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~   99 (244)
                      ++..+++++.++.|..+|..+  +  +..................  +..++.++.++.+..+|  ..+++.........
T Consensus       102 ~~~~v~v~~~~g~l~a~d~~t--G--~~~W~~~~~~~~~~~p~~~--~~~v~v~~~~g~l~~~d--~~tG~~~W~~~~~~  173 (376)
T 3q7m_A          102 SGGHVYIGSEKAQVYALNTSD--G--TVAWQTKVAGEALSRPVVS--DGLVLIHTSNGQLQALN--EADGAVKWTVNLDM  173 (376)
T ss_dssp             ETTEEEEEETTSEEEEEETTT--C--CEEEEEECSSCCCSCCEEE--TTEEEEECTTSEEEEEE--TTTCCEEEEEECCC
T ss_pred             eCCEEEEEcCCCEEEEEECCC--C--CEEEEEeCCCceEcCCEEE--CCEEEEEcCCCeEEEEE--CCCCcEEEEEeCCC
Confidence            345677777889999999876  4  4443433222211111222  44677788899999999  78887554443211


Q ss_pred             cCc---ceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCC---CceeEEEecC--CCCEEEEeeCCCeE
Q psy11529        100 INR---AATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIK---STITCLDWHP--NNHLLGCGSTDFKV  171 (244)
Q Consensus       100 ~~~---~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~---~~v~~~~~~p--~~~~l~~~~~dg~i  171 (244)
                      ...   ........  +..+++++.++.+..+|..+++..|..........   ..+..+.-.|  .+..++.++.++.+
T Consensus       174 ~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l  251 (376)
T 3q7m_A          174 PSLSLRGESAPTTA--FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNL  251 (376)
T ss_dssp             -----CCCCCCEEE--TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCE
T ss_pred             CceeecCCCCcEEE--CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEE
Confidence            110   00111111  45678888899999999988876443322111000   0000111112  24567777889999


Q ss_pred             EEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCC
Q psy11529        172 RVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQ  241 (244)
Q Consensus       172 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~  241 (244)
                      ..+|.                  .+++.+.....     .....+..  ++..|+.++.++.|..+|.++
T Consensus       252 ~~~d~------------------~tG~~~w~~~~-----~~~~~~~~--~~~~l~~~~~~g~l~~~d~~t  296 (376)
T 3q7m_A          252 TALDL------------------RSGQIMWKREL-----GSVNDFIV--DGNRIYLVDQNDRVMALTIDG  296 (376)
T ss_dssp             EEEET------------------TTCCEEEEECC-----CCEEEEEE--ETTEEEEEETTCCEEEEETTT
T ss_pred             EEEEC------------------CCCcEEeeccC-----CCCCCceE--ECCEEEEEcCCCeEEEEECCC
Confidence            99998                  56766655543     22344443  455677777888999988765

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.69  E-value=4.4e-05  Score=58.41  Aligned_cols=196  Identities=9%  Similarity=-0.016  Sum_probs=113.6

Q ss_pred             CCceEEEEEcCCCCeEE-EecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeE-EEEeCCccEEEEeeeC
Q psy11529          9 INPVTTHAWNNTRQQLA-FTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRI-VTCSADRNAYVWTQNN   86 (244)
Q Consensus         9 ~~~v~~~~~~~~~~~l~-~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~iwd~~~   86 (244)
                      ......++|++.+..|. +-...+.|+.+++.+  .  .....+.........+++++.+..| ++-...+.|.+.+  +
T Consensus       115 ~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g--~--~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~--~  188 (386)
T 3v65_B          115 LENAIALDFHHRRELVFWSDVTLDRILRANLNG--S--NVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVAN--L  188 (386)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEETTS--C--CEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECB--T
T ss_pred             CCccEEEEEecCCCeEEEEeCCCCcEEEEecCC--C--CcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEe--C
Confidence            34567899997655554 445578888888876  3  1222222223345678888755554 4444567888888  5


Q ss_pred             CCCCceeeEEEeccCcceEEEEECCCCCeEEEeeC-C-CeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEE
Q psy11529         87 DDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSG-A-RLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGC  164 (244)
Q Consensus        87 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d-~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~  164 (244)
                      .... ...+ ....-.....+++.|.+..|+.+.. . +.|..++++....    .......-.....++++|++..|+.
T Consensus       189 dg~~-~~~l-~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~----~~~~~~~~~~PnGlavd~~~~~lY~  262 (386)
T 3v65_B          189 DGAH-RKVL-LWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGR----RIIADTHLFWPNGLTIDYAGRRMYW  262 (386)
T ss_dssp             TSCS-CEEE-ECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC----EEEECSSCSCEEEEEEEGGGTEEEE
T ss_pred             CCCc-eEEe-ecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCc----EEEEECCCCCeeeEEEeCCCCEEEE
Confidence            4433 2222 2233456789999997776666554 3 5677777665433    2222222346789999987666555


Q ss_pred             ee-CCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEe
Q psy11529        165 GS-TDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRM  238 (244)
Q Consensus       165 ~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd  238 (244)
                      +. ..+.|..+|+.                  .......+...   ......+++ ..+.++.+-...+.|..++
T Consensus       263 aD~~~~~I~~~d~d------------------G~~~~~~~~~~---~~~P~giav-~~~~ly~td~~~~~V~~~~  315 (386)
T 3v65_B          263 VDAKHHVIERANLD------------------GSHRKAVISQG---LPHPFAITV-FEDSLYWTDWHTKSINSAN  315 (386)
T ss_dssp             EETTTTEEEEECTT------------------SCSCEEEECSS---CSSEEEEEE-ETTEEEEEETTTTEEEEEE
T ss_pred             EECCCCEEEEEeCC------------------CCeeEEEEECC---CCCceEEEE-ECCEEEEeeCCCCeEEEEE
Confidence            54 45788888862                  11111112222   334567777 3444444545566777776

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=98.68  E-value=4e-06  Score=61.80  Aligned_cols=169  Identities=9%  Similarity=0.019  Sum_probs=107.4

Q ss_pred             eccCCCceEEEEeCCCCCeEEEEe-CCccEEEEeeeCCCCCceeeEEEec----c--CcceEEEEE---CCCCCeEEEee
Q psy11529         51 LDGHDLKVTGIDWAPNTNRIVTCS-ADRNAYVWTQNNDDKKWKPTLVLLR----I--NRAATCVKW---SPLENKFAAGS  120 (244)
Q Consensus        51 ~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~----~--~~~v~~~~~---~~~~~~l~~~~  120 (244)
                      +......-.+++|++....|..++ ..++|..||  ...+..... .+..    .  ...+..+.|   .|+++++++..
T Consensus         8 ~~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~--~~~~~~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~   84 (334)
T 2p9w_A            8 VKVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYN--PKTQSHFNV-VIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMK   84 (334)
T ss_dssp             ECCTTCCCSCEEEETTTTEEEEEETTTTEEEEEC--TTTCCEEEE-CCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEE
T ss_pred             ecCcccCCcCccCcCCCCEEEEEeccCCEEEEEc--CCCCeEEEE-ecCCccccCCCcceeeEEEEeccCCCCcEEEEEc
Confidence            333344456789988555555554 689999999  654543222 2221    1  124689999   68877777544


Q ss_pred             -------------CCCeEEEEEee---cCCCceEEEeeec--C-------CCCceeEEEecCCCCEEEEeeCC-CeEEEE
Q psy11529        121 -------------GARLISVCYFE---SENDWWVAKHIKK--P-------IKSTITCLDWHPNNHLLGCGSTD-FKVRVF  174 (244)
Q Consensus       121 -------------~d~~i~i~d~~---~~~~~~~~~~~~~--~-------~~~~v~~~~~~p~~~~l~~~~~d-g~i~i~  174 (244)
                                   .+..+..||+.   +++..+.......  .       .......++..++|+..++++.. +.|...
T Consensus        85 ~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV  164 (334)
T 2p9w_A           85 NAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARV  164 (334)
T ss_dssp             ETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEE
T ss_pred             ccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEE
Confidence                         26779999998   6665333321110  0       11358899999999999988877 777666


Q ss_pred             EeeecccccCCCCCCCCccccccceeEEecCC---CCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCC
Q psy11529        175 SAYIKDIESAPQSTNWGSKSTLGNCLVELNNS---SSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQ  241 (244)
Q Consensus       175 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~  241 (244)
                      +.                   .++.+..+...   .......+.++++|+|+.|++....|.|..+|+++
T Consensus       165 ~p-------------------dG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~  215 (334)
T 2p9w_A          165 SA-------------------DGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK  215 (334)
T ss_dssp             CT-------------------TSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred             eC-------------------CCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence            64                   23322222111   00033467999999999888776799999999763

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.67  E-value=4.8e-05  Score=57.35  Aligned_cols=155  Identities=8%  Similarity=0.010  Sum_probs=95.2

Q ss_pred             CceEEEEEcCCCCeEEEe-cCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeE-EEEeCCccEEEEeeeCC
Q psy11529         10 NPVTTHAWNNTRQQLAFT-PNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRI-VTCSADRNAYVWTQNND   87 (244)
Q Consensus        10 ~~v~~~~~~~~~~~l~~~-~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~iwd~~~~   87 (244)
                      .....++|++.+..|..+ ...+.|+.+++.+  ..  ....+.........+++.+.+..| ++-...+.|.+.+  ..
T Consensus        73 ~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g--~~--~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~--~d  146 (349)
T 3v64_C           73 ENAIALDFHHRRELVFWSDVTLDRILRANLNG--SN--VEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVAN--LD  146 (349)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTS--CS--CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEE--TT
T ss_pred             CceEEEEEeccccEEEEEeccCCceEEEecCC--CC--ceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEc--CC
Confidence            446789999765555544 4568888888876  31  112222223345788998855544 4445567899988  54


Q ss_pred             CCCceeeEEEeccCcceEEEEECCCCCeEEEeeC-C-CeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEe
Q psy11529         88 DKKWKPTLVLLRINRAATCVKWSPLENKFAAGSG-A-RLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCG  165 (244)
Q Consensus        88 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d-~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~  165 (244)
                      ... ... .....-.....++++|.+..|+.... . +.|..++++....    .......-.....++++|++..|+.+
T Consensus       147 G~~-~~~-l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~----~~~~~~~~~~PnGla~d~~~~~lY~a  220 (349)
T 3v64_C          147 GAH-RKV-LLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGR----RIIADTHLFWPNGLTIDYAGRRMYWV  220 (349)
T ss_dssp             SCS-CEE-EECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC----EESCCSSCSCEEEEEEETTTTEEEEE
T ss_pred             CCc-eEE-EEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCc----EEEEECCCCCcceEEEeCCCCEEEEE
Confidence            433 222 22233456789999997666655544 3 6777777665433    12222223467899999877666555


Q ss_pred             e-CCCeEEEEEe
Q psy11529        166 S-TDFKVRVFSA  176 (244)
Q Consensus       166 ~-~dg~i~i~d~  176 (244)
                      . ..+.|..+|+
T Consensus       221 D~~~~~I~~~~~  232 (349)
T 3v64_C          221 DAKHHVIERANL  232 (349)
T ss_dssp             ETTTTEEEEEET
T ss_pred             ECCCCEEEEEeC
Confidence            4 4678888886

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.63  E-value=8e-07  Score=72.81  Aligned_cols=116  Identities=16%  Similarity=0.152  Sum_probs=76.9

Q ss_pred             EEEEcC-CCCeEEEecCCC-----------eEEEeeeccCCCcceeeeeecc-CCCceEEEEeCCCCCeEEEEeC-CccE
Q psy11529         14 THAWNN-TRQQLAFTPNNQ-----------EVHLYQYEKAANDWSQLDVLDG-HDLKVTGIDWAPNTNRIVTCSA-DRNA   79 (244)
Q Consensus        14 ~~~~~~-~~~~l~~~~~d~-----------~v~v~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~-d~~i   79 (244)
                      ++++.+ +++.++.|+.+.           .+.+||...  +.+..+..+.. +.....++++..+++.++.|+. +..+
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t--~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v  267 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPST--GIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKT  267 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTT--CCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCE
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCC--CcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCce
Confidence            556677 888888886532           688899877  65665554432 2333445778889999998884 5689


Q ss_pred             EEEeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEee-CC-----CeEEEEEeecCC
Q psy11529         80 YVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGS-GA-----RLISVCYFESEN  134 (244)
Q Consensus        80 ~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d-----~~i~i~d~~~~~  134 (244)
                      .+||  ..++++.....+. ....-.+++..++++.++.|+ .+     ..+.+||..+.+
T Consensus       268 ~~yd--~~t~~W~~~~~~~-~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~  325 (656)
T 1k3i_A          268 SLYD--SSSDSWIPGPDMQ-VARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT  325 (656)
T ss_dssp             EEEE--GGGTEEEECCCCS-SCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred             EEec--CcCCceeECCCCC-ccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCc
Confidence            9999  6666654432221 122234566777899999888 34     468888877653

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.62  E-value=5.2e-06  Score=64.41  Aligned_cols=154  Identities=10%  Similarity=0.070  Sum_probs=92.7

Q ss_pred             eEEEEeCC-CCCeEEEEeCCccEEEEeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCC----C-eEEEEEee
Q psy11529         58 VTGIDWAP-NTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGA----R-LISVCYFE  131 (244)
Q Consensus        58 v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----~-~i~i~d~~  131 (244)
                      ...++++| ++..|+.+...+.|+.+|  ...+...   .+.........++|+++++.|+++...    . .+.+++ .
T Consensus       139 P~~lavdp~~~g~Lyv~d~~~~I~~id--~~~~~v~---~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~-~  212 (430)
T 3tc9_A          139 AVWLSFDPKNHNHLYLVGEQHPTRLID--FEKEYVS---TVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILT-R  212 (430)
T ss_dssp             CCEEEEETTEEEEEEEEEBTEEEEEEE--TTTTEEE---EEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEE-G
T ss_pred             CCEEEECCCCCCeEEEEeCCCcEEEEE--CCCCEEE---EEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEe-C
Confidence            46888998 455566665557888888  6655422   222345668899999999976666542    1 233333 2


Q ss_pred             cCCCceEEEeeecCCCCceeEEEecC-CCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCC
Q psy11529        132 SENDWWVAKHIKKPIKSTITCLDWHP-NNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGG  210 (244)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (244)
                      .+.... .... . .......++++| +|.++++-..++.|..++..                  ............  .
T Consensus       213 ~g~~~~-~~~l-~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~------------------~~~~~~~~~~~~--~  269 (430)
T 3tc9_A          213 ESGFKV-ITEL-T-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFT------------------TQETTPLFTIQD--S  269 (430)
T ss_dssp             GGTSCS-EEEE-E-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETT------------------TTEEEEEEECSS--S
T ss_pred             CCceee-eeee-c-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECC------------------CCcEEEEEEcCC--C
Confidence            222210 0111 1 123567888999 67666666677899999972                  222211122110  3


Q ss_pred             CCeEEEEEecCCCEEEEe-eCCCcEEEEeCC
Q psy11529        211 GWIHSVAFSKDGNKLCWT-SHDGSINVRMSQ  240 (244)
Q Consensus       211 ~~v~~~~~s~~~~~l~~~-~~dg~i~vwd~~  240 (244)
                      .....++|+|+|++|+.. ...+.|..++.+
T Consensus       270 ~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d  300 (430)
T 3tc9_A          270 GWEFHIQFHPSGNYAYIVVVNQHYILRSDYD  300 (430)
T ss_dssp             SCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred             CcceeEEEcCCCCEEEEEECCCCEEEEEeCC
Confidence            457899999999955544 456788887754

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.61  E-value=7.9e-05  Score=57.27  Aligned_cols=184  Identities=16%  Similarity=0.106  Sum_probs=110.0

Q ss_pred             eEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEE-eCCccEEEEeeeCCCCC--ceeeEEEec
Q psy11529         23 QLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTC-SADRNAYVWTQNNDDKK--WKPTLVLLR   99 (244)
Q Consensus        23 ~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~--~~~~~~~~~   99 (244)
                      +|+.+. ...|+..++..  ..   ...+......+..++|++.+..|+.+ ...+.|+.++  +....  .........
T Consensus        85 ~ll~~~-~~~I~~i~l~~--~~---~~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~--~~g~~~~~~~~~~~~~  156 (400)
T 3p5b_L           85 YLFFTN-RHEVRKMTLDR--SE---YTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQ--LDRAHGVSSYDTVISR  156 (400)
T ss_dssp             EEEEEE-TTEEEEECTTS--CS---CEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEE--C------CCCEEEECS
T ss_pred             eeEEec-cceeEEEccCC--cc---eeEeccccCcceEEeeeeccCceEEEecCCCeEEEEE--cccCCCCCcceEEEeC
Confidence            444443 46888888876  32   22223345677899999866666555 4467888888  44321  111222222


Q ss_pred             cCcceEEEEECCCCCeEE-EeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEeeC--CCeEEEEEe
Q psy11529        100 INRAATCVKWSPLENKFA-AGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGST--DFKVRVFSA  176 (244)
Q Consensus       100 ~~~~v~~~~~~~~~~~l~-~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~--dg~i~i~d~  176 (244)
                      .......+++.+.+..|+ +-...+.|.+.+++....    .............++++|.+..|+....  .+.|...++
T Consensus       157 ~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~----~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~  232 (400)
T 3p5b_L          157 DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR----KTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGL  232 (400)
T ss_dssp             SCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSE----EEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEET
T ss_pred             CCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCce----EEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeC
Confidence            445678899988544444 444577888887765543    2222223346789999997666655442  367887776


Q ss_pred             eecccccCCCCCCCCccccccceeEEe-cCCCCCCCCeEEEEEecCCCEEEEee-CCCcEEEEeCC
Q psy11529        177 YIKDIESAPQSTNWGSKSTLGNCLVEL-NNSSSGGGWIHSVAFSKDGNKLCWTS-HDGSINVRMSQ  240 (244)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~vwd~~  240 (244)
                      .                   +.....+ ...   -.....+++++++..|+.+. ..+.|..+|++
T Consensus       233 d-------------------G~~~~~~~~~~---l~~P~glavd~~~~~lY~aD~~~~~I~~~d~d  276 (400)
T 3p5b_L          233 N-------------------GVDIYSLVTEN---IQWPNGITLDLLSGRLYWVDSKLHSISSIDVN  276 (400)
T ss_dssp             T-------------------SCSCEEEECSS---CSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             C-------------------CCccEEEEECC---CCceEEEEEEeCCCEEEEEECCCCEEEEEeCC
Confidence            2                   3222222 222   45678999998877776664 45678888775

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.59  E-value=2.5e-05  Score=55.77  Aligned_cols=163  Identities=7%  Similarity=-0.126  Sum_probs=100.9

Q ss_pred             eeeeeccCC--CceEEEEeCCCCCeEEEEeCCccEEEEeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCe
Q psy11529         47 QLDVLDGHD--LKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARL  124 (244)
Q Consensus        47 ~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~  124 (244)
                      .+.++. |.  .....+.|+. +.++.+.+.+|.|+++|  +++++..... +.. ......+++..+ +.....-.++.
T Consensus        45 Vv~~~p-hd~~~ftqGL~~~~-~~Ly~stG~~g~v~~iD--~~Tgkv~~~~-l~~-~~FgeGit~~g~-~Ly~ltw~~~~  117 (268)
T 3nok_A           45 IIREYP-HATNAFTQGLVFHQ-GHFFESTGHQGTLRQLS--LESAQPVWME-RLG-NIFAEGLASDGE-RLYQLTWTEGL  117 (268)
T ss_dssp             EEEEEE-CCTTCCEEEEEEET-TEEEEEETTTTEEEECC--SSCSSCSEEE-ECT-TCCEEEEEECSS-CEEEEESSSCE
T ss_pred             EEEEEc-CCCccccceEEEEC-CEEEEEcCCCCEEEEEE--CCCCcEEeEE-CCC-CcceeEEEEeCC-EEEEEEccCCE
Confidence            344453 44  3347888984 56667777888999999  8888876665 332 212233555432 33444446889


Q ss_pred             EEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEec
Q psy11529        125 ISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELN  204 (244)
Q Consensus       125 i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (244)
                      +.+||.++.+.   ......+  ..-..++  +|++.|+.+..+++|.++|.                  .+.+.+..+.
T Consensus       118 v~V~D~~Tl~~---~~ti~~~--~eGwGLt--~Dg~~L~vSdGs~~l~~iDp------------------~T~~v~~~I~  172 (268)
T 3nok_A          118 LFTWSGMPPQR---ERTTRYS--GEGWGLC--YWNGKLVRSDGGTMLTFHEP------------------DGFALVGAVQ  172 (268)
T ss_dssp             EEEEETTTTEE---EEEEECS--SCCCCEE--EETTEEEEECSSSEEEEECT------------------TTCCEEEEEE
T ss_pred             EEEEECCcCcE---EEEEeCC--CceeEEe--cCCCEEEEECCCCEEEEEcC------------------CCCeEEEEEE
Confidence            99999988765   2222222  1223333  56777777777889999998                  5556665554


Q ss_pred             CCCC--CCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCCC
Q psy11529        205 NSSS--GGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQV  242 (244)
Q Consensus       205 ~~~~--~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~  242 (244)
                      ....  .-..++.+.|. +|++.+..-.+..|.+.|.++.
T Consensus       173 V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG  211 (268)
T 3nok_A          173 VKLRGQPVELINELECA-NGVIYANIWHSSDVLEIDPATG  211 (268)
T ss_dssp             CEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTC
T ss_pred             eCCCCcccccccccEEe-CCEEEEEECCCCeEEEEeCCCC
Confidence            3200  01245677877 7765555556778988888753

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.57  E-value=1.1e-05  Score=66.20  Aligned_cols=159  Identities=8%  Similarity=0.027  Sum_probs=97.4

Q ss_pred             EEEeCCCCCeEEEEeCCc-------------------cEEEEeeeCCCCCceeeEEEeccC-------cceEEEEECCCC
Q psy11529         60 GIDWAPNTNRIVTCSADR-------------------NAYVWTQNNDDKKWKPTLVLLRIN-------RAATCVKWSPLE  113 (244)
Q Consensus        60 ~~~~~~~~~~l~~~~~d~-------------------~i~iwd~~~~~~~~~~~~~~~~~~-------~~v~~~~~~~~~  113 (244)
                      .++++|+...++.++.++                   .|..+|  ..+++.+.......+.       .......+..+|
T Consensus       234 ~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD--~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G  311 (668)
T 1kv9_A          234 SMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIR--PDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDG  311 (668)
T ss_dssp             CEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEEC--TTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETT
T ss_pred             ceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEc--CCCCceeeEeecCCCccccccCCCCcEEEEeccCC
Confidence            467888778888777665                   388888  8899876666543232       222222222355


Q ss_pred             C---eEEEeeCCCeEEEEEeecCCCceEEEeee-------c-CCCC------------------------ceeEEEecCC
Q psy11529        114 N---KFAAGSGARLISVCYFESENDWWVAKHIK-------K-PIKS------------------------TITCLDWHPN  158 (244)
Q Consensus       114 ~---~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-------~-~~~~------------------------~v~~~~~~p~  158 (244)
                      +   .++.++.+|.+.++|.++++..+......       . ....                        .-..++++|+
T Consensus       312 ~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~  391 (668)
T 1kv9_A          312 KPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPG  391 (668)
T ss_dssp             EEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETT
T ss_pred             cEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCC
Confidence            4   68889999999999988887632111100       0 0000                        0112677887


Q ss_pred             CCEEEEee------------------------------------CCCeEEEEEeeecccccCCCCCCCCccccccceeEE
Q psy11529        159 NHLLGCGS------------------------------------TDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVE  202 (244)
Q Consensus       159 ~~~l~~~~------------------------------------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (244)
                      ..+++...                                    .+|.|..||+                  .+++.+-.
T Consensus       392 ~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~------------------~tG~~~W~  453 (668)
T 1kv9_A          392 TGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDP------------------VKQKAAWK  453 (668)
T ss_dssp             TTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEET------------------TTTEEEEE
T ss_pred             CCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeC------------------CCCcEEEE
Confidence            66655422                                    2256666776                  56666655


Q ss_pred             ecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCCC
Q psy11529        203 LNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQV  242 (244)
Q Consensus       203 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~  242 (244)
                      ....    .+.....+...+.+++.++.|+.++.||.++-
T Consensus       454 ~~~~----~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG  489 (668)
T 1kv9_A          454 VPYP----THWNGGTLSTAGNLVFQGTAAGQMHAYSADKG  489 (668)
T ss_dssp             EEES----SSCCCCEEEETTTEEEEECTTSEEEEEETTTC
T ss_pred             ccCC----CCCcCceeEeCCCEEEEECCcccchhhhhhcC
Confidence            5442    23333444557778888999999999998753

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.53  E-value=8.9e-05  Score=62.20  Aligned_cols=199  Identities=9%  Similarity=0.004  Sum_probs=122.6

Q ss_pred             CCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeec----cCCCceEEEEeCCCCCeEEEEeCCccEEEEee
Q psy11529          9 INPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLD----GHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQ   84 (244)
Q Consensus         9 ~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~   84 (244)
                      ...|.++...++|.+. .|+.++-|..|+...  +.+.......    -....|.++...++|... .|+.++-+..|+ 
T Consensus       309 ~~~i~~i~~D~~g~lW-igt~~~Gl~~~~~~~--~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~lW-iGt~~~Gl~~~~-  383 (795)
T 4a2l_A          309 QRSVRSIFMDSQGGMW-LGTYFGGLNYYHPIR--NRFKNIRNIPYKNSLSDNVVSCIVEDKDKNLW-IGTNDGGLNLYN-  383 (795)
T ss_dssp             SSCEEEEEECTTSCEE-EEESSSCEEEECGGG--GSSEEECCCTTSSSCSCSSEEEEEECTTSCEE-EEESSSCEEEEC-
T ss_pred             CCcEEEEEEeCCcCEE-EEECCCCeEEeCCCc--ccceEEcCCCCCCCCCCCeeEEEEECCCCCEE-EEECCCCeEEEc-
Confidence            4679999999888755 455667788888765  3222221111    024569999998888754 466677799999 


Q ss_pred             eCCCCCceeeEEEe------ccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeec----CCCCceeEEE
Q psy11529         85 NNDDKKWKPTLVLL------RINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKK----PIKSTITCLD  154 (244)
Q Consensus        85 ~~~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~----~~~~~v~~~~  154 (244)
                       ..++.........      -....|.++...++++.|.+|+.++-+..+|.++++.    .....    .....|.++.
T Consensus       384 -~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~----~~~~~~~~~l~~~~v~~i~  458 (795)
T 4a2l_A          384 -PITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQV----ENFNQRNSQLVNENVYAIL  458 (795)
T ss_dssp             -TTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCE----EEECTTTSCCSCSCEEEEE
T ss_pred             -CCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcE----EEeecCCCCcCCCeeEEEE
Confidence             6665532221100      1235688999888887577778777788888776542    12111    1235788999


Q ss_pred             ecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCC----CCCCCCeEEEEEecCCCEEEEeeC
Q psy11529        155 WHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNS----SSGGGWIHSVAFSKDGNKLCWTSH  230 (244)
Q Consensus       155 ~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~v~~~~~s~~~~~l~~~~~  230 (244)
                      ..++|++.+. +.+ -+.+||...                  ++. ..+...    .-....|.++...++|++.+... 
T Consensus       459 ~d~~g~lwig-t~~-Gl~~~~~~~------------------~~~-~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-  516 (795)
T 4a2l_A          459 PDGEGNLWLG-TLS-ALVRFNPEQ------------------RSF-TTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-  516 (795)
T ss_dssp             ECSSSCEEEE-ESS-CEEEEETTT------------------TEE-EECCBCTTCCBCCCCCEEEEEECTTCCEEEEES-
T ss_pred             ECCCCCEEEE-ecC-ceeEEeCCC------------------CeE-EEccccccccccCCceEEEEEECCCCCEEEEeC-
Confidence            8888875554 344 488888632                  211 111100    00045788999988888665443 


Q ss_pred             CCcEEEEeCC
Q psy11529        231 DGSINVRMSQ  240 (244)
Q Consensus       231 dg~i~vwd~~  240 (244)
                       +-|..||.+
T Consensus       517 -~Gl~~~~~~  525 (795)
T 4a2l_A          517 -EGLSVFKQE  525 (795)
T ss_dssp             -SCEEEEEEE
T ss_pred             -CceEEEeCC
Confidence             447777654

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.53  E-value=3.4e-05  Score=54.47  Aligned_cols=164  Identities=7%  Similarity=-0.054  Sum_probs=97.6

Q ss_pred             eeeeeeccCC--CceEEEEeCCCCCeEEEEeCC--ccEEEEeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEE-ee
Q psy11529         46 SQLDVLDGHD--LKVTGIDWAPNTNRIVTCSAD--RNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAA-GS  120 (244)
Q Consensus        46 ~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~d--~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~  120 (244)
                      +.+.++. |.  .-...+.|++ +.++.+.+.+  ..|+.+|  +.+++......+.... .-..+++.  ++.|+. .-
T Consensus        10 ~v~~~~p-hd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD--~~tgkv~~~~~l~~~~-fgeGi~~~--~~~ly~ltw   82 (243)
T 3mbr_X           10 RVVKRYP-HDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVD--LETGRILQRAEVPPPY-FGAGIVAW--RDRLIQLTW   82 (243)
T ss_dssp             EEEEEEE-CCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEE--TTTCCEEEEEECCTTC-CEEEEEEE--TTEEEEEES
T ss_pred             EEEEEcC-CCCccccccEEEEC-CEEEEECCCCCCceEEEEE--CCCCCEEEEEeCCCCc-ceeEEEEe--CCEEEEEEe
Confidence            4455553 54  4567899986 5555666654  4899999  8899866555432211 11233443  344444 44


Q ss_pred             CCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCcccccccee
Q psy11529        121 GARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCL  200 (244)
Q Consensus       121 ~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  200 (244)
                      .++.+.+||.++.+.   ......+.  .-..++  ++++.|+.+..++.|.++|.                  .+.+.+
T Consensus        83 ~~~~v~v~D~~tl~~---~~ti~~~~--~Gwglt--~dg~~L~vSdgs~~l~~iDp------------------~t~~~~  137 (243)
T 3mbr_X           83 RNHEGFVYDLATLTP---RARFRYPG--EGWALT--SDDSHLYMSDGTAVIRKLDP------------------DTLQQV  137 (243)
T ss_dssp             SSSEEEEEETTTTEE---EEEEECSS--CCCEEE--ECSSCEEEECSSSEEEEECT------------------TTCCEE
T ss_pred             eCCEEEEEECCcCcE---EEEEeCCC--CceEEe--eCCCEEEEECCCCeEEEEeC------------------CCCeEE
Confidence            588999999988765   22222222  223443  56776776667889999998                  455555


Q ss_pred             EEecCCC--CCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCCC
Q psy11529        201 VELNNSS--SGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQV  242 (244)
Q Consensus       201 ~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~  242 (244)
                      ..+....  ..-..++.+.|. +|+..+..-.+..|.+.|.++.
T Consensus       138 ~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG  180 (243)
T 3mbr_X          138 GSIKVTAGGRPLDNLNELEWV-NGELLANVWLTSRIARIDPASG  180 (243)
T ss_dssp             EEEECEETTEECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTC
T ss_pred             EEEEEccCCcccccceeeEEe-CCEEEEEECCCCeEEEEECCCC
Confidence            5554310  001345667765 6765555545668888877653

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.52  E-value=0.00025  Score=59.47  Aligned_cols=199  Identities=8%  Similarity=-0.004  Sum_probs=117.1

Q ss_pred             CCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeec--cCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeC
Q psy11529          9 INPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLD--GHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNN   86 (244)
Q Consensus         9 ~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~   86 (244)
                      ...|.++...++|+.|.+|+.++-|.+++..+  +.+.......  .....|.++...++|...+.. . +-+.+||  .
T Consensus       405 ~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~--~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt-~-~Gl~~~~--~  478 (795)
T 4a2l_A          405 SNNIKAVYVDEKKSLVYIGTHAGGLSILHRNS--GQVENFNQRNSQLVNENVYAILPDGEGNLWLGT-L-SALVRFN--P  478 (795)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTEEEEEETTT--CCEEEECTTTSCCSCSCEEEEEECSSSCEEEEE-S-SCEEEEE--T
T ss_pred             CccEEEEEEcCCCCEEEEEeCcCceeEEeCCC--CcEEEeecCCCCcCCCeeEEEEECCCCCEEEEe-c-CceeEEe--C
Confidence            46788999888888455666767799999876  3222221100  134678999998888765544 4 4588888  6


Q ss_pred             CCCCceeeEEE----eccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEe--e-ecCCCCceeEEEecCCC
Q psy11529         87 DDKKWKPTLVL----LRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKH--I-KKPIKSTITCLDWHPNN  159 (244)
Q Consensus        87 ~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~--~-~~~~~~~v~~~~~~p~~  159 (244)
                      .+++.......    .-....|.++...++|+..+. +. +-+..|+.++...  ....  . .......|.++...++|
T Consensus       479 ~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWig-t~-~Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g  554 (795)
T 4a2l_A          479 EQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIG-GE-EGLSVFKQEGLDI--QKASILPVSNVTKLFTNCIYEASNG  554 (795)
T ss_dssp             TTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEE-ES-SCEEEEEEETTEE--EECCCSCSCGGGGSCEEEEEECTTS
T ss_pred             CCCeEEEccccccccccCCceEEEEEECCCCCEEEE-eC-CceEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEECCCC
Confidence            66543221110    012356889999988875554 44 4477888776531  1000  0 01123578899999998


Q ss_pred             CEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCC-CCCCCeEEEEEecCCCEEEEeeCCCcEEEEe
Q psy11529        160 HLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSS-SGGGWIHSVAFSKDGNKLCWTSHDGSINVRM  238 (244)
Q Consensus       160 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd  238 (244)
                      ++.+. +.. -|..||..                  .. ....+.... -....|.++...++|++.+++ . +-|..||
T Consensus       555 ~lWig-T~~-Gl~~~d~~------------------~~-~~~~~~~~~gl~~~~i~~i~~d~~g~lWi~t-~-~Gl~~~~  611 (795)
T 4a2l_A          555 IIWVG-TRE-GFYCFNEK------------------DK-QIKRYNTTNGLPNNVVYGILEDSFGRLWLST-N-RGISCFN  611 (795)
T ss_dssp             CEEEE-ESS-CEEEEETT------------------TT-EEEEECGGGTCSCSCEEEEEECTTSCEEEEE-T-TEEEEEE
T ss_pred             CEEEE-eCC-CceeECCC------------------CC-cEEEeCCCCCCchhheEEEEECCCCCEEEEc-C-CceEEEc
Confidence            75554 334 47788862                  22 222221110 004468888888888866554 3 3455666


Q ss_pred             CC
Q psy11529        239 SQ  240 (244)
Q Consensus       239 ~~  240 (244)
                      .+
T Consensus       612 ~~  613 (795)
T 4a2l_A          612 PE  613 (795)
T ss_dssp             TT
T ss_pred             CC
Confidence            54

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.52  E-value=0.00012  Score=54.34  Aligned_cols=183  Identities=16%  Similarity=0.108  Sum_probs=109.0

Q ss_pred             eEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEE-eCCccEEEEeeeCCCC---CceeeEEEe
Q psy11529         23 QLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTC-SADRNAYVWTQNNDDK---KWKPTLVLL   98 (244)
Q Consensus        23 ~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~---~~~~~~~~~   98 (244)
                      +|+.+. ...|+..++..  ..  ....+. ......+++|++.+..|+.+ ...+.|..++  ....   ... .....
T Consensus         3 ~ll~~~-~~~I~~i~~~~--~~--~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~--~~g~~~~~~~-~~~~~   73 (316)
T 1ijq_A            3 YLFFTN-RHEVRKMTLDR--SE--YTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQ--LDRAHGVSSY-DTVIS   73 (316)
T ss_dssp             EEEEEC-BSSEEEEETTS--CC--CEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEE--C--------C-EEEEC
T ss_pred             EEEEEC-CCeEEEEECCC--cc--eEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEE--CCCCCCCccc-EEEEe
Confidence            344544 35689899877  32  222233 34567899999866655544 4468899988  5441   111 11122


Q ss_pred             ccCcceEEEEECCCCCeEE-EeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEeeC-C-CeEEEEE
Q psy11529         99 RINRAATCVKWSPLENKFA-AGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGST-D-FKVRVFS  175 (244)
Q Consensus        99 ~~~~~v~~~~~~~~~~~l~-~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~-d-g~i~i~d  175 (244)
                      ..-.....+++.+.+..|+ +-...+.|.+++++....    .............++++|.+..|+.+.. . +.|..++
T Consensus        74 ~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~----~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~  149 (316)
T 1ijq_A           74 RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR----KTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGG  149 (316)
T ss_dssp             SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSE----EEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEE
T ss_pred             CCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCce----EEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEc
Confidence            2234567899987555554 445678899988765432    1222222356789999997665555443 2 6788777


Q ss_pred             eeecccccCCCCCCCCccccccceeEEec-CCCCCCCCeEEEEEecCCCEEEEee-CCCcEEEEeCC
Q psy11529        176 AYIKDIESAPQSTNWGSKSTLGNCLVELN-NSSSGGGWIHSVAFSKDGNKLCWTS-HDGSINVRMSQ  240 (244)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~vwd~~  240 (244)
                      +                   .+.....+. ..   -.....++++|++..|+.+. ..+.|..+|++
T Consensus       150 ~-------------------dG~~~~~~~~~~---~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~d  194 (316)
T 1ijq_A          150 L-------------------NGVDIYSLVTEN---IQWPNGITLDLLSGRLYWVDSKLHSISSIDVN  194 (316)
T ss_dssp             T-------------------TSCCEEEEECSS---CSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             C-------------------CCCCeEEEEECC---CCCceEEEEeccCCEEEEEECCCCeEEEEecC
Confidence            5                   233333332 22   45678999999877666554 45688888875

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.47  E-value=2.2e-05  Score=63.23  Aligned_cols=76  Identities=9%  Similarity=-0.091  Sum_probs=46.2

Q ss_pred             EEeCCCCCeEEEEeCC----------------ccEEEEeeeCCCCCceeeEEEeccCc-------ceEEEEECCCCC---
Q psy11529         61 IDWAPNTNRIVTCSAD----------------RNAYVWTQNNDDKKWKPTLVLLRINR-------AATCVKWSPLEN---  114 (244)
Q Consensus        61 ~~~~~~~~~l~~~~~d----------------~~i~iwd~~~~~~~~~~~~~~~~~~~-------~v~~~~~~~~~~---  114 (244)
                      +++.++...++.+..+                +.|..+|  ..+++.+.......+..       ...-+...++|+   
T Consensus       240 ~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald--~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~  317 (571)
T 2ad6_A          240 YAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRD--LDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTP  317 (571)
T ss_dssp             CEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEE--TTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEE
T ss_pred             EEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEe--cCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEE
Confidence            4566655566555432                2588888  88888666555432211       111122224663   


Q ss_pred             eEEEeeCCCeEEEEEeecCCCceE
Q psy11529        115 KFAAGSGARLISVCYFESENDWWV  138 (244)
Q Consensus       115 ~l~~~~~d~~i~i~d~~~~~~~~~  138 (244)
                      .++.++.+|.+.++|.++++..+.
T Consensus       318 ~v~~~~~~G~l~~lD~~tG~~~w~  341 (571)
T 2ad6_A          318 LLSHIDRNGILYTLNRENGNLIVA  341 (571)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEEE
T ss_pred             EEEEeCCCcEEEEEECCCCCEEee
Confidence            577788899999999888876443

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.46  E-value=0.00021  Score=57.67  Aligned_cols=80  Identities=18%  Similarity=0.155  Sum_probs=51.3

Q ss_pred             CCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeE
Q psy11529        122 ARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLV  201 (244)
Q Consensus       122 d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (244)
                      ++.|..||+.+++..|......     ....-.....+.+++.++.||.++.||.                  .+++.+.
T Consensus       465 ~G~l~A~D~~tG~~~W~~~~~~-----~~~~g~~~tagglvf~g~~dg~l~A~D~------------------~tG~~lW  521 (582)
T 1flg_A          465 VGSLRAMDPVSGKVVWEHKEHL-----PLWAGVLATAGNLVFTGTGDGYFKAFDA------------------KSGKELW  521 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEESS-----CCCSCCEEETTTEEEEECTTSEEEEEET------------------TTCCEEE
T ss_pred             cceEEEEECCCCCEEEEecCCC-----CCcccceEeCCCEEEEECCCCcEEEEEC------------------CCCCEEE
Confidence            5778889988887655443321     1111112224667888999999999999                  7888888


Q ss_pred             EecCCCCCCCCeEEEEEecCCCEEE
Q psy11529        202 ELNNSSSGGGWIHSVAFSKDGNKLC  226 (244)
Q Consensus       202 ~~~~~~~~~~~v~~~~~s~~~~~l~  226 (244)
                      +++...  .....-+.|..+|+..+
T Consensus       522 ~~~~~~--g~~a~P~~y~~~G~qYv  544 (582)
T 1flg_A          522 KFQTGS--GIVSPPITWEQDGEQYL  544 (582)
T ss_dssp             EEECSS--CCCSCCEEEEETTEEEE
T ss_pred             EecCCC--CcccCceEEEECCEEEE
Confidence            887641  11122367778888433

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=98.44  E-value=0.0002  Score=53.41  Aligned_cols=197  Identities=11%  Similarity=0.118  Sum_probs=107.3

Q ss_pred             CceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEE-EeeeCCC
Q psy11529         10 NPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYV-WTQNNDD   88 (244)
Q Consensus        10 ~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i-wd~~~~~   88 (244)
                      +.+..+.+.++++.++++. ++.|  |...+.+..++.+.  ......+..+++.+++.+++.+. ++.+.. .|  ...
T Consensus       122 ~~~~~i~~~~~~~~~~~~~-~g~v--~~S~DgG~tW~~~~--~~~~~~~~~~~~~~~~~~~~~g~-~G~~~~S~d--~gG  193 (327)
T 2xbg_A          122 GSPRLIKALGNGSAEMITN-VGAI--YRTKDSGKNWQALV--QEAIGVMRNLNRSPSGEYVAVSS-RGSFYSTWE--PGQ  193 (327)
T ss_dssp             SCEEEEEEEETTEEEEEET-TCCE--EEESSTTSSEEEEE--CSCCCCEEEEEECTTSCEEEEET-TSSEEEEEC--TTC
T ss_pred             CCeEEEEEECCCCEEEEeC-CccE--EEEcCCCCCCEEee--cCCCcceEEEEEcCCCcEEEEEC-CCcEEEEeC--CCC
Confidence            4567788877777776664 4543  33332223444433  23456788999999888777664 444433 34  112


Q ss_pred             CCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeee-cCCCCceeEEEecCCCCEEEEeeC
Q psy11529         89 KKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIK-KPIKSTITCLDWHPNNHLLGCGST  167 (244)
Q Consensus        89 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-~~~~~~v~~~~~~p~~~~l~~~~~  167 (244)
                      ..+...  .......+..+.+.+++..+ .++.+|.+.+.+.+.+.. +...... ......+.++.+.|++.+++++. 
T Consensus       194 ~tW~~~--~~~~~~~~~~~~~~~~g~~~-~~~~~G~~~~s~~D~G~t-W~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-  268 (327)
T 2xbg_A          194 TAWEPH--NRTTSRRLHNMGFTPDGRLW-MIVNGGKIAFSDPDNSEN-WGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-  268 (327)
T ss_dssp             SSCEEE--ECCSSSCEEEEEECTTSCEE-EEETTTEEEEEETTEEEE-ECCCBCTTSSCCSCEEEEEESSSSCEEEEES-
T ss_pred             CceeEC--CCCCCCccceeEECCCCCEE-EEeCCceEEEecCCCCCe-eEeccCCcccCCcceEEEEecCCCEEEEEeC-
Confidence            233222  12345678899999988655 445677776643121211 1111110 11223588899998887766654 


Q ss_pred             CCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeC
Q psy11529        168 DFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMS  239 (244)
Q Consensus       168 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~  239 (244)
                      +|.|. +..                  ..++.-..+.........+.++.|.++++ ++.++.+|.|.-++-
T Consensus       269 ~g~i~-~S~------------------DgG~tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~G~~G~i~~~~~  320 (327)
T 2xbg_A          269 AGALL-CSQ------------------DGGQTWQQDVDVKKVPSNFYKILFFSPDQ-GFILGQKGILLRYVT  320 (327)
T ss_dssp             TTCEE-EES------------------STTSSCEECGGGTTSSSCCCEEEEEETTE-EEEECSTTEEEEECC
T ss_pred             CCeEE-EeC------------------CCCcccEEcCccCCCCCCeEEEEEECCCc-eEEEcCCceEEEEcC
Confidence            66653 222                  11222222221000034578888876665 555667898877764

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.44  E-value=1.8e-05  Score=65.00  Aligned_cols=184  Identities=11%  Similarity=0.073  Sum_probs=110.7

Q ss_pred             EEEEcCCCCeEEEecCCC-------------------eEEEeeeccCCCcceeeeeecc--CC-------CceEEEEeCC
Q psy11529         14 THAWNNTRQQLAFTPNNQ-------------------EVHLYQYEKAANDWSQLDVLDG--HD-------LKVTGIDWAP   65 (244)
Q Consensus        14 ~~~~~~~~~~l~~~~~d~-------------------~v~v~~~~~~~~~~~~~~~~~~--~~-------~~v~~~~~~~   65 (244)
                      .+++.|++.++++++.++                   .|..+|..+  +  +....++.  |.       .+.....+..
T Consensus       234 ~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~t--G--~~~W~~~~~~~~~wd~~~~~~~~~~d~~~  309 (668)
T 1kv9_A          234 SMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDT--G--KLAWHYQVTPGDSWDFTATQQITLAELNI  309 (668)
T ss_dssp             CEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTT--C--CEEEEEESSTTCCSCCCCCSCEEEEEEEE
T ss_pred             ceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCC--C--ceeeEeecCCCccccccCCCCcEEEEecc
Confidence            467888888888887665                   388888877  5  44444432  22       2222223333


Q ss_pred             CCC---eEEEEeCCccEEEEeeeCCCCCceeeEEEec---------cC-cc------------------------eEEEE
Q psy11529         66 NTN---RIVTCSADRNAYVWTQNNDDKKWKPTLVLLR---------IN-RA------------------------ATCVK  108 (244)
Q Consensus        66 ~~~---~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~---------~~-~~------------------------v~~~~  108 (244)
                      +|+   .++.++.+|.++++|  ..+++.+.......         .. ..                        -..++
T Consensus       310 ~G~~~~~v~~~~~~G~l~~lD--~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a  387 (668)
T 1kv9_A          310 DGKPRKVLMQAPKNGFFYVLD--RTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMS  387 (668)
T ss_dssp             TTEEEEEEEECCTTSEEEEEE--TTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCE
T ss_pred             CCcEEEEEEEECCCCEEEEEE--CCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcce
Confidence            564   688889999999999  88888653221110         00 00                        01256


Q ss_pred             ECCCCCeEEEe------------------------------------eCCCeEEEEEeecCCCceEEEeeecCCCCceeE
Q psy11529        109 WSPLENKFAAG------------------------------------SGARLISVCYFESENDWWVAKHIKKPIKSTITC  152 (244)
Q Consensus       109 ~~~~~~~l~~~------------------------------------~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~  152 (244)
                      ++|+...+++.                                    ..++.|..||..+++..|.....     .....
T Consensus       388 ~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~-----~~~~~  462 (668)
T 1kv9_A          388 FNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYP-----THWNG  462 (668)
T ss_dssp             EETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEES-----SSCCC
T ss_pred             ECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCC-----CCCcC
Confidence            77775555431                                    12378999999988764444321     22233


Q ss_pred             EEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCC-EEEEe
Q psy11529        153 LDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGN-KLCWT  228 (244)
Q Consensus       153 ~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~  228 (244)
                      ..+...+.++++++.||.++.||.                  .+++.+..+....  .....-+.+..+|+ +++.+
T Consensus       463 ~~~~t~gg~vf~g~~dg~l~a~d~------------------~tG~~l~~~~~~~--~~~~~p~~~~~~G~~yva~~  519 (668)
T 1kv9_A          463 GTLSTAGNLVFQGTAAGQMHAYSA------------------DKGEALWQFEAQS--GIVAAPMTFELAGRQYVAIM  519 (668)
T ss_dssp             CEEEETTTEEEEECTTSEEEEEET------------------TTCCEEEEEECSS--CCCSCCEEEEETTEEEEEEE
T ss_pred             ceeEeCCCEEEEECCcccchhhhh------------------hcChhheEecCCC--CcccCceEEEECCEEEEEEE
Confidence            344456778889999999999998                  6788887776541  11112344556777 44443

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.44  E-value=0.00045  Score=57.67  Aligned_cols=185  Identities=16%  Similarity=0.088  Sum_probs=107.7

Q ss_pred             eEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEE-EEeCCccEEEEeeeCCCCCc--eeeEEEec
Q psy11529         23 QLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIV-TCSADRNAYVWTQNNDDKKW--KPTLVLLR   99 (244)
Q Consensus        23 ~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~iwd~~~~~~~~--~~~~~~~~   99 (244)
                      +|+.+. ...|+..++..  .   ....+......+.+++|++....|+ +-...+.|+.++  +.....  .....+..
T Consensus       397 ~Ll~an-~~~Ir~i~l~~--~---~~~~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~--l~g~~~~~~~~~vi~~  468 (791)
T 3m0c_C          397 YLFFTN-RHEVRKMTLDR--S---EYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQ--LDRAHGVSSYDTVISR  468 (791)
T ss_dssp             EEEEEC-BSSEEEECTTS--C---CCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEE--C--------CEEEECS
T ss_pred             cccccc-ccceeEeeccC--C---cceeeecCCCceEEEeecccCCeeEEeeccceeEEEEe--ccCCCCCcceeEEEec
Confidence            444443 45688888766  3   2222222345678999998555554 444467788888  443211  11222222


Q ss_pred             cCcceEEEEECCCCCeEEEe-eCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEeeC--CCeEEEEEe
Q psy11529        100 INRAATCVKWSPLENKFAAG-SGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGST--DFKVRVFSA  176 (244)
Q Consensus       100 ~~~~v~~~~~~~~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~--dg~i~i~d~  176 (244)
                      .......|++.+.+..|+.+ ...+.|.+.+++....    .............|+++|.+.+|+....  .+.|...++
T Consensus       469 ~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~----~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~  544 (791)
T 3m0c_C          469 DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR----KTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGL  544 (791)
T ss_dssp             SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSE----EEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEET
T ss_pred             CCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeE----EEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEec
Confidence            44567789998877555554 4577898888875543    2222223356889999997666655542  267887776


Q ss_pred             eecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEee-CCCcEEEEeCC
Q psy11529        177 YIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTS-HDGSINVRMSQ  240 (244)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~vwd~~  240 (244)
                                         .+.....+....  -.....|++++.+..|+.+. ....|...++.
T Consensus       545 -------------------dG~~~~~lv~~~--l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~d  588 (791)
T 3m0c_C          545 -------------------NGVDIYSLVTEN--IQWPNGITLDLLSGRLYWVDSKLHSISSIDVN  588 (791)
T ss_dssp             -------------------TSCCEEEEECSS--CSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             -------------------CCCceEEEEeCC--CCCceEEEEecCCCeEEEEeCCCCcEEEEecC
Confidence                               233333332210  45678899998766666654 34567777764

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.40  E-value=0.00026  Score=52.55  Aligned_cols=202  Identities=10%  Similarity=-0.078  Sum_probs=113.5

Q ss_pred             CceEEEEEcCCCCeEE-EecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeE-EEEeCCccEEEEeeeCC
Q psy11529         10 NPVTTHAWNNTRQQLA-FTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRI-VTCSADRNAYVWTQNND   87 (244)
Q Consensus        10 ~~v~~~~~~~~~~~l~-~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~iwd~~~~   87 (244)
                      ....+++|++++..|. +-...+.|..+++.+..........+...-.....+++++.+..| ++-...+.|.+.+  ..
T Consensus        30 ~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~--~~  107 (316)
T 1ijq_A           30 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVAD--TK  107 (316)
T ss_dssp             SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEE--TT
T ss_pred             CceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEe--CC
Confidence            4567899998665554 445568899998864100001111222222345788998755544 4445678899999  55


Q ss_pred             CCCceeeEEEeccCcceEEEEECCCCCeEEEeeCC--CeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEe
Q psy11529         88 DKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGA--RLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCG  165 (244)
Q Consensus        88 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~  165 (244)
                      ... ...+ ....-.....++++|.+..|+.+...  +.|...+++....    .......-.....++++|++..|+.+
T Consensus       108 g~~-~~~~-~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~----~~~~~~~~~~P~gla~d~~~~~lY~~  181 (316)
T 1ijq_A          108 GVK-RKTL-FRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI----YSLVTENIQWPNGITLDLLSGRLYWV  181 (316)
T ss_dssp             SSS-EEEE-EECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE----EEEECSSCSCEEEEEEETTTTEEEEE
T ss_pred             CCc-eEEE-EECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCe----EEEEECCCCCceEEEEeccCCEEEEE
Confidence            433 2222 22234567899999976666655543  5777777654332    12222223567899999987766655


Q ss_pred             e-CCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeC
Q psy11529        166 S-TDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMS  239 (244)
Q Consensus       166 ~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~  239 (244)
                      . ..+.|..+|+...                ..+.+......   ......+++. .+.++++-...+.|..++.
T Consensus       182 D~~~~~I~~~d~dg~----------------~~~~~~~~~~~---~~~P~giav~-~~~ly~~d~~~~~V~~~~~  236 (316)
T 1ijq_A          182 DSKLHSISSIDVNGG----------------NRKTILEDEKR---LAHPFSLAVF-EDKVFWTDIINEAIFSANR  236 (316)
T ss_dssp             ETTTTEEEEEETTSC----------------SCEEEEECTTT---TSSEEEEEEE-TTEEEEEETTTTEEEEEET
T ss_pred             ECCCCeEEEEecCCC----------------ceEEEeecCCc---cCCcEEEEEE-CCEEEEEECCCCeEEEEeC
Confidence            4 4578999997310                01111111111   2345677774 3444445555677777775

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.39  E-value=0.00027  Score=52.53  Aligned_cols=155  Identities=10%  Similarity=-0.036  Sum_probs=94.1

Q ss_pred             ceEEEEEcCCCCe-EEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeE-EEEeCCccEEEEeeeCCC
Q psy11529         11 PVTTHAWNNTRQQ-LAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRI-VTCSADRNAYVWTQNNDD   88 (244)
Q Consensus        11 ~v~~~~~~~~~~~-l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~iwd~~~~~   88 (244)
                      ...+++|.+.+.. +.+-...+.|..+++.+  .. .....+...-.....+++.+.+..| ++-...+.|.+++  ...
T Consensus        36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g--~~-~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~--~dG  110 (318)
T 3sov_A           36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNK--TE-SVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSN--LDG  110 (318)
T ss_dssp             EEEEEEEEGGGTEEEEEETTTTEEEEEETTS--SS-CCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEE--TTS
T ss_pred             ccEEEEEEeCCCEEEEEECCCCcEEEEEccC--CC-ceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEE--CCC
Confidence            4567889885444 44445678888888876  21 1111222222345678888755444 4445567899999  544


Q ss_pred             CCceeeEEEeccCcceEEEEECCCCCeEEEeeC--CCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEee
Q psy11529         89 KKWKPTLVLLRINRAATCVKWSPLENKFAAGSG--ARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGS  166 (244)
Q Consensus        89 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~  166 (244)
                      .. ...+ ..........+++.|.+..|+.+..  .+.|...+++....    .......-...+.++++|++..|+.+.
T Consensus       111 ~~-~~~l-~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~----~~~~~~~l~~Pnglavd~~~~~lY~aD  184 (318)
T 3sov_A          111 SL-RKVL-FWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR----FIIINSEIYWPNGLTLDYEEQKLYWAD  184 (318)
T ss_dssp             CS-CEEE-ECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSC----EEEECSSCSCEEEEEEETTTTEEEEEE
T ss_pred             Cc-EEEE-EeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCe----EEEEECCCCCccEEEEeccCCEEEEEE
Confidence            32 2222 2234456789999997666666653  46777777654432    122222234678999999776665554


Q ss_pred             -CCCeEEEEEe
Q psy11529        167 -TDFKVRVFSA  176 (244)
Q Consensus       167 -~dg~i~i~d~  176 (244)
                       ..+.|..+|+
T Consensus       185 ~~~~~I~~~d~  195 (318)
T 3sov_A          185 AKLNFIHKSNL  195 (318)
T ss_dssp             TTTTEEEEEET
T ss_pred             CCCCEEEEEcC
Confidence             4678988887

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.37  E-value=0.00033  Score=58.68  Aligned_cols=202  Identities=8%  Similarity=-0.044  Sum_probs=116.9

Q ss_pred             CCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeee-eccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCC
Q psy11529          9 INPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDV-LDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNND   87 (244)
Q Consensus         9 ~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~   87 (244)
                      ...|.++...++|++. .|+.++-|..|+..+  +.+..... -......|.++...+++.+.+ |+.++-+..+|  ..
T Consensus       362 ~~~v~~i~~d~~g~lW-igt~~~Gl~~~~~~~--~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~--~~  435 (781)
T 3v9f_A          362 NKVVSSVCDDGQGKLW-IGTDGGGINVFENGK--RVAIYNKENRELLSNSVLCSLKDSEGNLWF-GTYLGNISYYN--TR  435 (781)
T ss_dssp             SSCEEEEEECTTSCEE-EEEBSSCEEEEETTE--EEEECC-----CCCSBEEEEEECTTSCEEE-EETTEEEEEEC--SS
T ss_pred             CcceEEEEEcCCCCEE-EEeCCCcEEEEECCC--CeEEEccCCCCCCCcceEEEEECCCCCEEE-EeccCCEEEEc--CC
Confidence            4568999888888755 455455688888765  21111110 012346789998888777555 66666788888  65


Q ss_pred             CCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeec---CCCCceeEEEecCCCCEEEE
Q psy11529         88 DKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKK---PIKSTITCLDWHPNNHLLGC  164 (244)
Q Consensus        88 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~---~~~~~v~~~~~~p~~~~l~~  164 (244)
                      +++.............|.++...+++. |..++. +-+..+|..+.+...  .....   .....|.++...++|++.+.
T Consensus       436 ~~~~~~~~~~~~~~~~v~~i~~d~~g~-lwigt~-~Gl~~~~~~~~~~~~--~~~~~~~~~~~~~i~~i~~d~~g~lWig  511 (781)
T 3v9f_A          436 LKKFQIIELEKNELLDVRVFYEDKNKK-IWIGTH-AGVFVIDLASKKVIH--HYDTSNSQLLENFVRSIAQDSEGRFWIG  511 (781)
T ss_dssp             SCEEEECCSTTTCCCCEEEEEECTTSE-EEEEET-TEEEEEESSSSSCCE--EECTTTSSCSCSCEEEEEECTTCCEEEE
T ss_pred             CCcEEEeccCCCCCCeEEEEEECCCCC-EEEEEC-CceEEEeCCCCeEEe--cccCcccccccceeEEEEEcCCCCEEEE
Confidence            554221110001245788998888776 444555 457788876654311  11111   11357889999998876554


Q ss_pred             eeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCC-CCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCC
Q psy11529        165 GSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSS-SGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQ  241 (244)
Q Consensus       165 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~  241 (244)
                       +..+-+..||...                  . ....+.... -....|.++...++|.+.++. .+|.+..||.++
T Consensus       512 -t~~~Gl~~~~~~~------------------~-~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T-~~Glv~~~d~~~  568 (781)
T 3v9f_A          512 -TFGGGVGIYTPDM------------------Q-LVRKFNQYEGFCSNTINQIYRSSKGQMWLAT-GEGLVCFPSARN  568 (781)
T ss_dssp             -ESSSCEEEECTTC------------------C-EEEEECTTTTCSCSCEEEEEECTTSCEEEEE-TTEEEEESCTTT
T ss_pred             -EcCCCEEEEeCCC------------------C-eEEEccCCCCCCCCeeEEEEECCCCCEEEEE-CCCceEEECCCC
Confidence             4433477787521                  1 222222110 004568899988888865544 366547777653

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=98.35  E-value=0.0005  Score=53.97  Aligned_cols=159  Identities=8%  Similarity=0.067  Sum_probs=93.9

Q ss_pred             ceEEEEEcCC-CC-eEEEecCCCeEEEeeeccCCCcceeeeeec-c---CCCceEEEEe-------CCCCCeEEEEeCCc
Q psy11529         11 PVTTHAWNNT-RQ-QLAFTPNNQEVHLYQYEKAANDWSQLDVLD-G---HDLKVTGIDW-------APNTNRIVTCSADR   77 (244)
Q Consensus        11 ~v~~~~~~~~-~~-~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~-~---~~~~v~~~~~-------~~~~~~l~~~~~d~   77 (244)
                      ....|+|+|. .. ++++-...+.|++.|+++  +   .+..+. .   .......++|       ++++..|+.+...+
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~--~---~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~  214 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKN--R---MLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYD  214 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTT--T---EEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCC
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCC--C---EEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCC
Confidence            4568999983 44 444444446788888877  3   333332 1   1235789999       99999777665543


Q ss_pred             -------cEEEEeeeCCC-CCcee---eEEEeccCcceEEEEECCCCCe-EEEeeCCCeEEEEEee-------cCCCc--
Q psy11529         78 -------NAYVWTQNNDD-KKWKP---TLVLLRINRAATCVKWSPLENK-FAAGSGARLISVCYFE-------SENDW--  136 (244)
Q Consensus        78 -------~i~iwd~~~~~-~~~~~---~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~i~d~~-------~~~~~--  136 (244)
                             .|.+.+  ... +.+..   ...+.. -.....++++|++.. +++-..++.|..+|++       ++...  
T Consensus       215 ~~~~~~~~V~~i~--r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp  291 (496)
T 3kya_A          215 GKGDESPSVYIIK--RNADGTFDDRSDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDP  291 (496)
T ss_dssp             TTGGGEEEEEEEE--CCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCC
T ss_pred             CCcccCceEEEEe--cCCCCceeecccceeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecc
Confidence                   255665  333 33321   011112 235568899995444 5555567889999987       34320  


Q ss_pred             ---e----EEEeeecCCCCceeEEEecCCCCEEEEe-eCCCeEEEEEee
Q psy11529        137 ---W----VAKHIKKPIKSTITCLDWHPNNHLLGCG-STDFKVRVFSAY  177 (244)
Q Consensus       137 ---~----~~~~~~~~~~~~v~~~~~~p~~~~l~~~-~~dg~i~i~d~~  177 (244)
                         .    .......+.......++|+|+|++|+.+ +....|+.++..
T Consensus       292 ~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~d  340 (496)
T 3kya_A          292 IVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYD  340 (496)
T ss_dssp             BGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred             cccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecC
Confidence               0    0011122333556899999999955544 456788887763

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.35  E-value=0.00043  Score=53.19  Aligned_cols=160  Identities=10%  Similarity=-0.049  Sum_probs=97.2

Q ss_pred             CCceEEEEEcCCCCeEEEe-cCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeE-EEEeCCccEEEEeeeC
Q psy11529          9 INPVTTHAWNNTRQQLAFT-PNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRI-VTCSADRNAYVWTQNN   86 (244)
Q Consensus         9 ~~~v~~~~~~~~~~~l~~~-~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~iwd~~~   86 (244)
                      ...+.+++|++.+..|..+ ...+.|+.+++.+..........+.........+++.+.+..| ++-...+.|.+.+  +
T Consensus       111 ~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~--~  188 (400)
T 3p5b_L          111 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVAD--T  188 (400)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEC--T
T ss_pred             cCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEe--C
Confidence            4567889999866555544 4567888888765110001222233234567789998844444 4445577898888  5


Q ss_pred             CCCCceeeEEEeccCcceEEEEECCCCCeEEEeeC--CCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEE
Q psy11529         87 DDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSG--ARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGC  164 (244)
Q Consensus        87 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~  164 (244)
                      .... ...+ ....-.....+++.|.+..|+....  .+.|...+++....    .......-.....++++|++..|+.
T Consensus       189 ~g~~-~~~l-~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~----~~~~~~~l~~P~glavd~~~~~lY~  262 (400)
T 3p5b_L          189 KGVK-RKTL-FRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI----YSLVTENIQWPNGITLDLLSGRLYW  262 (400)
T ss_dssp             TTCS-EEEE-EECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSC----EEEECSSCSCEEEEEEETTTTEEEE
T ss_pred             CCCc-eEEE-EeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCcc----EEEEECCCCceEEEEEEeCCCEEEE
Confidence            5443 2222 2234456789999997666666553  36777777765543    2222222357789999998776666


Q ss_pred             ee-CCCeEEEEEe
Q psy11529        165 GS-TDFKVRVFSA  176 (244)
Q Consensus       165 ~~-~dg~i~i~d~  176 (244)
                      +. ..+.|..+|+
T Consensus       263 aD~~~~~I~~~d~  275 (400)
T 3p5b_L          263 VDSKLHSISSIDV  275 (400)
T ss_dssp             EETTTTEEEEEET
T ss_pred             EECCCCEEEEEeC
Confidence            54 4568888887

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.35  E-value=0.00035  Score=51.88  Aligned_cols=185  Identities=11%  Similarity=0.061  Sum_probs=109.7

Q ss_pred             eEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEE-eCCccEEEEeeeCCCCCceeeEEEeccC
Q psy11529         23 QLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTC-SADRNAYVWTQNNDDKKWKPTLVLLRIN  101 (244)
Q Consensus        23 ~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~  101 (244)
                      +|+.+. ...|+..++++  ........+. ......+++|++.+..|+.+ ...+.|..++  ...+...... ....-
T Consensus         6 ~ll~~~-~~~I~~i~l~~--~~~~~~~~~~-~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~--~~g~~~~~~~-~~~~l   78 (318)
T 3sov_A            6 LLLYAN-RRDLRLVDATN--GKENATIVVG-GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTE--FNKTESVQNV-VVSGL   78 (318)
T ss_dssp             EEEEEC-EEEEEEEETTC--TTSCCEEEEE-EEEEEEEEEEEGGGTEEEEEETTTTEEEEEE--TTSSSCCCEE-EEECC
T ss_pred             EEEEEc-cCeEEEEECCC--CceEEEEEec-CCCccEEEEEEeCCCEEEEEECCCCcEEEEE--ccCCCceEEE-EcCCC
Confidence            444443 46899999876  3111112222 22346689999855555544 4567888888  5544321122 22233


Q ss_pred             cceEEEEECCCCCeE-EEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEeeC--CCeEEEEEeee
Q psy11529        102 RAATCVKWSPLENKF-AAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGST--DFKVRVFSAYI  178 (244)
Q Consensus       102 ~~v~~~~~~~~~~~l-~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~--dg~i~i~d~~~  178 (244)
                      .....+++.+.+..| ++-...+.|.+++++....    .............++++|.+..|+....  .+.|...++  
T Consensus        79 ~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~----~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~--  152 (318)
T 3sov_A           79 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLR----KVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGM--  152 (318)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC----EEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEET--
T ss_pred             CCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcE----EEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEc--
Confidence            456788998755444 4444577899988776543    2222233356789999997666655542  567877775  


Q ss_pred             cccccCCCCCCCCccccccceeEEe-cCCCCCCCCeEEEEEecCCCEEEEee-CCCcEEEEeCC
Q psy11529        179 KDIESAPQSTNWGSKSTLGNCLVEL-NNSSSGGGWIHSVAFSKDGNKLCWTS-HDGSINVRMSQ  240 (244)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~vwd~~  240 (244)
                                       .+.....+ ...   -.....++++|++..|+.+. ..+.|..+|+.
T Consensus       153 -----------------dG~~~~~~~~~~---l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~d  196 (318)
T 3sov_A          153 -----------------DGSSRFIIINSE---IYWPNGLTLDYEEQKLYWADAKLNFIHKSNLD  196 (318)
T ss_dssp             -----------------TSCSCEEEECSS---CSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             -----------------CCCCeEEEEECC---CCCccEEEEeccCCEEEEEECCCCEEEEEcCC
Confidence                             23222222 222   44578999999777666554 46778888875

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.33  E-value=8.4e-05  Score=60.05  Aligned_cols=76  Identities=8%  Similarity=-0.074  Sum_probs=48.8

Q ss_pred             EEeCCCCCeEEEEeCC----------------ccEEEEeeeCCCCCceeeEEEeccCc-------ceEEEEEC-CCC---
Q psy11529         61 IDWAPNTNRIVTCSAD----------------RNAYVWTQNNDDKKWKPTLVLLRINR-------AATCVKWS-PLE---  113 (244)
Q Consensus        61 ~~~~~~~~~l~~~~~d----------------~~i~iwd~~~~~~~~~~~~~~~~~~~-------~v~~~~~~-~~~---  113 (244)
                      +++.++...++.+..+                +.|..+|  ..+++.+-......|..       ...-+... .+|   
T Consensus       246 ~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald--~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~  323 (599)
T 1w6s_A          246 YAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRD--ADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKAR  323 (599)
T ss_dssp             CEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEE--TTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEE
T ss_pred             eeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEe--CCCCceeeEeecCCCccccccCCCccEEEeccccCCcEE
Confidence            4555666666666544                3788888  88998766665443321       11112222 456   


Q ss_pred             CeEEEeeCCCeEEEEEeecCCCceE
Q psy11529        114 NKFAAGSGARLISVCYFESENDWWV  138 (244)
Q Consensus       114 ~~l~~~~~d~~i~i~d~~~~~~~~~  138 (244)
                      ..++.++.+|.+.++|.++++..+.
T Consensus       324 ~~v~~~~~~G~l~~lD~~tG~~lw~  348 (599)
T 1w6s_A          324 KLLTHPDRNGIVYTLDRTDGALVSA  348 (599)
T ss_dssp             EEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             EEEEEECCCcEEEEEECCCCCEeec
Confidence            4677788999999999988876443

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.30  E-value=0.00021  Score=57.72  Aligned_cols=59  Identities=5%  Similarity=-0.198  Sum_probs=38.9

Q ss_pred             ccEEEEeeeCCCCCceeeEEEeccCc-------ceEEEEEC-CCCC---eEEEeeCCCeEEEEEeecCCCce
Q psy11529         77 RNAYVWTQNNDDKKWKPTLVLLRINR-------AATCVKWS-PLEN---KFAAGSGARLISVCYFESENDWW  137 (244)
Q Consensus        77 ~~i~iwd~~~~~~~~~~~~~~~~~~~-------~v~~~~~~-~~~~---~l~~~~~d~~i~i~d~~~~~~~~  137 (244)
                      +.|..+|  ..+++.+-......+..       ...-+... .+|+   .++.++.+|.++++|.++++.++
T Consensus       291 ~~v~AlD--~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw  360 (582)
T 1flg_A          291 SGQVGVD--PSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQN  360 (582)
T ss_dssp             SEEEEEC--TTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEE
T ss_pred             ceEEEEe--CCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCCEec
Confidence            5788899  88998766665433321       11112221 4564   67888999999999988887644

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.22  E-value=0.00019  Score=57.76  Aligned_cols=181  Identities=12%  Similarity=0.062  Sum_probs=105.3

Q ss_pred             EEEcCCCCeEEEecCC----------------CeEEEeeeccCCCcceeeeeec--cC--------CCceEEEEeCCCCC
Q psy11529         15 HAWNNTRQQLAFTPNN----------------QEVHLYQYEKAANDWSQLDVLD--GH--------DLKVTGIDWAPNTN   68 (244)
Q Consensus        15 ~~~~~~~~~l~~~~~d----------------~~v~v~~~~~~~~~~~~~~~~~--~~--------~~~v~~~~~~~~~~   68 (244)
                      +++.++...+..+..+                +.|..+|..+  +  +.+..++  .|        ..++. +....+|+
T Consensus       240 ~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~t--G--~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~  314 (571)
T 2ad6_A          240 YAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDT--G--MAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGK  314 (571)
T ss_dssp             CEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTT--C--CEEEEEESSTTCSSCCCCCCCCEE-EEEEETTE
T ss_pred             EEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCC--C--cEEEEecCCCCcccccccCCCCEE-EecccCCc
Confidence            4566666666655432                3588888876  4  3433333  12        12221 22224674


Q ss_pred             ---eEEEEeCCccEEEEeeeCCCCCceeeEEEeccC-----------cce--------------------------EEEE
Q psy11529         69 ---RIVTCSADRNAYVWTQNNDDKKWKPTLVLLRIN-----------RAA--------------------------TCVK  108 (244)
Q Consensus        69 ---~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~-----------~~v--------------------------~~~~  108 (244)
                         .++.++.+|.+.++|  ..+++.+....+....           .++                          ..++
T Consensus       315 ~~~~v~~~~~~G~l~~lD--~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a  392 (571)
T 2ad6_A          315 MTPLLSHIDRNGILYTLN--RENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDS  392 (571)
T ss_dssp             EEEEEEEECTTSEEEEEE--TTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCE
T ss_pred             EEEEEEEeCCCcEEEEEE--CCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCce
Confidence               567788899999999  7888765444321100           011                          2357


Q ss_pred             ECCCCCeEEEee-------------------------------------CCCeEEEEEeecCCCceEEEeeecCCCCcee
Q psy11529        109 WSPLENKFAAGS-------------------------------------GARLISVCYFESENDWWVAKHIKKPIKSTIT  151 (244)
Q Consensus       109 ~~~~~~~l~~~~-------------------------------------~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~  151 (244)
                      ++|+...+++..                                     .++.+..||..+++..|.....     ..+.
T Consensus       393 ~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~-----~~~~  467 (571)
T 2ad6_A          393 YDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEK-----FAAW  467 (571)
T ss_dssp             EETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEES-----SCCC
T ss_pred             ECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCC-----CCcc
Confidence            778766766643                                     3478888888888764443321     1222


Q ss_pred             EEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEE
Q psy11529        152 CLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCW  227 (244)
Q Consensus       152 ~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~  227 (244)
                      ...+...+..+++++.||.|+.+|.                  .+++.+..+....  ...-.-+.+..+|+.++.
T Consensus       468 ~~~~~t~gg~v~~g~~dg~l~a~D~------------------~tG~~lw~~~~~~--~~~~~p~~~~~~G~~yv~  523 (571)
T 2ad6_A          468 GGTLYTKGGLVWYATLDGYLKALDN------------------KDGKELWNFKMPS--GGIGSPMTYSFKGKQYIG  523 (571)
T ss_dssp             SBCEEETTTEEEEECTTSEEEEEET------------------TTCCEEEEEECSS--CCCSCCEEEEETTEEEEE
T ss_pred             ceeEEECCCEEEEEcCCCeEEEEEC------------------CCCCEEEEEeCCC--CcEeeeEEEEECCEEEEE
Confidence            2222334567778899999999998                  6788887776531  111223446678875543

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=98.21  E-value=0.0007  Score=49.70  Aligned_cols=189  Identities=11%  Similarity=0.106  Sum_probs=98.2

Q ss_pred             CCCeEEEecCC-----CeEEEeeeccCCCc---ceeeeeeccCCCceEEEEeCCCCCeEEEEeCC-----ccEEEEeeeC
Q psy11529         20 TRQQLAFTPNN-----QEVHLYQYEKAAND---WSQLDVLDGHDLKVTGIDWAPNTNRIVTCSAD-----RNAYVWTQNN   86 (244)
Q Consensus        20 ~~~~l~~~~~d-----~~v~v~~~~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~iwd~~~   86 (244)
                      +++.++.|+.+     ..+.+||..+  +.   +..+..+.........+.+  +++.++.|+.+     ..+.+||  .
T Consensus        62 ~~~l~v~GG~~~~~~~~~~~~~d~~~--~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d--~  135 (301)
T 2vpj_A           62 HDRIYVIGGYDGRSRLSSVECLDYTA--DEDGVWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYD--P  135 (301)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTC--CTTCCCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEE--T
T ss_pred             CCEEEEEcCCCCCccCceEEEEECCC--CCCCeeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEc--C
Confidence            56677777654     4688899877  55   5655444322222222333  46666666643     3578888  7


Q ss_pred             CCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCC-----CeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCE
Q psy11529         87 DDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGA-----RLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHL  161 (244)
Q Consensus        87 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~  161 (244)
                      .+.++.....+.........+.+  +++.++.|+.+     ..+.+||..+.+  |...............+.+  ++++
T Consensus       136 ~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~--W~~~~~~p~~r~~~~~~~~--~~~i  209 (301)
T 2vpj_A          136 NIDQWSMLGDMQTAREGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHTGH--WTNVTPMATKRSGAGVALL--NDHI  209 (301)
T ss_dssp             TTTEEEEEEECSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTE--EEEECCCSSCCBSCEEEEE--TTEE
T ss_pred             CCCeEEECCCCCCCcccceEEEE--CCEEEEECCCCCCcccceEEEEeCCCCc--EEeCCCCCcccccceEEEE--CCEE
Confidence            77776554332222222223333  56677776654     347777766553  3332221111112222222  5667


Q ss_pred             EEEeeCC-----CeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCC-----
Q psy11529        162 LGCGSTD-----FKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHD-----  231 (244)
Q Consensus       162 l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----  231 (244)
                      ++.|+.+     ..+.+||+....                ...+..+...   ......+.+  ++++++.|+.+     
T Consensus       210 ~v~GG~~~~~~~~~v~~yd~~~~~----------------W~~~~~~p~~---r~~~~~~~~--~~~i~v~GG~~~~~~~  268 (301)
T 2vpj_A          210 YVVGGFDGTAHLSSVEAYNIRTDS----------------WTTVTSMTTP---RCYVGATVL--RGRLYAIAGYDGNSLL  268 (301)
T ss_dssp             EEECCBCSSSBCCCEEEEETTTTE----------------EEEECCCSSC---CBSCEEEEE--TTEEEEECCBCSSSBE
T ss_pred             EEEeCCCCCcccceEEEEeCCCCc----------------EEECCCCCCc---ccceeEEEE--CCEEEEEcCcCCCccc
Confidence            7777654     468888873221                1222222211   222222222  77777777765     


Q ss_pred             CcEEEEeCCC
Q psy11529        232 GSINVRMSQQ  241 (244)
Q Consensus       232 g~i~vwd~~~  241 (244)
                      ..+.+||+++
T Consensus       269 ~~v~~yd~~~  278 (301)
T 2vpj_A          269 SSIECYDPII  278 (301)
T ss_dssp             EEEEEEETTT
T ss_pred             ccEEEEcCCC
Confidence            3578888765

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.19  E-value=0.0011  Score=53.57  Aligned_cols=78  Identities=13%  Similarity=0.104  Sum_probs=48.9

Q ss_pred             CCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeE
Q psy11529        122 ARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLV  201 (244)
Q Consensus       122 d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (244)
                      .+.+..||+.+++..|......     ....-.....+.+++.++.||.++.||.                  .+++.+.
T Consensus       452 ~G~l~A~D~~tG~~~W~~~~~~-----~~~~g~~~tagg~vf~gt~dg~l~A~D~------------------~tG~~lW  508 (599)
T 1w6s_A          452 LGQIKAYNAITGDYKWEKMERF-----AVWGGTMATAGDLVFYGTLDGYLKARDS------------------DTGDLLW  508 (599)
T ss_dssp             CEEEEEECTTTCCEEEEEEESS-----CCCSBCEEETTTEEEEECTTSEEEEEET------------------TTCCEEE
T ss_pred             cCeEEEEECCCCCEEeEecCCC-----CccCcceEecCCEEEEECCCCeEEEEEC------------------CCCCEEE
Confidence            4678888888887655443221     1111112235667888999999999999                  7788888


Q ss_pred             EecCCCCCCCCeEEEEEecCCCE
Q psy11529        202 ELNNSSSGGGWIHSVAFSKDGNK  224 (244)
Q Consensus       202 ~~~~~~~~~~~v~~~~~s~~~~~  224 (244)
                      +++...  .....-+.+..+|+.
T Consensus       509 ~~~l~~--g~~~~P~~y~~~G~q  529 (599)
T 1w6s_A          509 KFKIPS--GAIGYPMTYTHKGTQ  529 (599)
T ss_dssp             EEECSS--CCCSCCEEEEETTEE
T ss_pred             EeeCCC--CcEeccEEEEeCCEE
Confidence            776541  222233566678873

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=98.18  E-value=0.00096  Score=50.16  Aligned_cols=196  Identities=9%  Similarity=0.068  Sum_probs=111.4

Q ss_pred             ceEEEEEcCCCCeEEEec------------CCCeEEEeeeccCCCcceeeeeecc-----CCCceEEEEeCC--CCC-eE
Q psy11529         11 PVTTHAWNNTRQQLAFTP------------NNQEVHLYQYEKAANDWSQLDVLDG-----HDLKVTGIDWAP--NTN-RI   70 (244)
Q Consensus        11 ~v~~~~~~~~~~~l~~~~------------~d~~v~v~~~~~~~~~~~~~~~~~~-----~~~~v~~~~~~~--~~~-~l   70 (244)
                      ...+++..|+|..+++++            .+|.|.++|..++..+.+.+ .+.+     .......+.+.+  ++. +|
T Consensus        51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l-~~~g~~~~~~~f~PhGi~~~~d~dg~~~L  129 (355)
T 3sre_A           51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSEL-EIIGNTLDISSFNPHGISTFIDDDNTVYL  129 (355)
T ss_dssp             CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEEC-EEECSSCCGGGCCEEEEEEEECTTCCEEE
T ss_pred             CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEE-EccCCCCCcCceeeeeeEEEECCCCcEEE
Confidence            456778888886665552            68999999987422222222 2332     234566777755  454 44


Q ss_pred             EEEe-C--CccEEEEeeeCCCCCceeeEEEecc-CcceEEEEECCCCCeEEEeeC---C------------CeEEEEEee
Q psy11529         71 VTCS-A--DRNAYVWTQNNDDKKWKPTLVLLRI-NRAATCVKWSPLENKFAAGSG---A------------RLISVCYFE  131 (244)
Q Consensus        71 ~~~~-~--d~~i~iwd~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~---d------------~~i~i~d~~  131 (244)
                      +.+. .  +.++.+|+++...+.........+. -...+.+.+.++|..+++...   |            ..-.+|.++
T Consensus       130 ~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d  209 (355)
T 3sre_A          130 LVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYS  209 (355)
T ss_dssp             EEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEEC
T ss_pred             EEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEE
Confidence            4442 2  5678888864443333222222221 245789999999987666431   1            223455554


Q ss_pred             cCCCceEEEeeecCCCCceeEEEecCCCCEEEEee-CCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCC
Q psy11529        132 SENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGS-TDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGG  210 (244)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (244)
                      .++.    ..... .-...+.++|+||++.|+.+. ..++|..|++....               .......+..    .
T Consensus       210 ~~~~----~~~~~-~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g---------------~l~~~~~~~~----~  265 (355)
T 3sre_A          210 PNDV----RVVAE-GFDFANGINISPDGKYVYIAELLAHKIHVYEKHANW---------------TLTPLRVLSF----D  265 (355)
T ss_dssp             TTCC----EEEEE-EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTS---------------CEEEEEEEEC----S
T ss_pred             CCeE----EEeec-CCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCC---------------cEecCEEEeC----C
Confidence            4432    11111 124578999999998776655 56789999984110               0011122321    4


Q ss_pred             CCeEEEEEec-CCCEEEEeeCC
Q psy11529        211 GWIHSVAFSK-DGNKLCWTSHD  231 (244)
Q Consensus       211 ~~v~~~~~s~-~~~~l~~~~~d  231 (244)
                      ...-.+++.+ +|++.+++..+
T Consensus       266 g~PDGi~vD~e~G~lwva~~~~  287 (355)
T 3sre_A          266 TLVDNISVDPVTGDLWVGCHPN  287 (355)
T ss_dssp             SEEEEEEECTTTCCEEEEEESC
T ss_pred             CCCceEEEeCCCCcEEEEecCC
Confidence            5577889998 58877766433

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=98.16  E-value=0.0011  Score=49.95  Aligned_cols=158  Identities=9%  Similarity=0.065  Sum_probs=93.1

Q ss_pred             CceEEEEeCCCCCeEEEEe------------CCccEEEEeeeCCC--CCceeeEEEec-----cCcceEEEEECC--CCC
Q psy11529         56 LKVTGIDWAPNTNRIVTCS------------ADRNAYVWTQNNDD--KKWKPTLVLLR-----INRAATCVKWSP--LEN  114 (244)
Q Consensus        56 ~~v~~~~~~~~~~~l~~~~------------~d~~i~iwd~~~~~--~~~~~~~~~~~-----~~~~v~~~~~~~--~~~  114 (244)
                      .....++..|+|..+++++            .+|.|.++|  ..+  .+.. .+.+.+     ..-....+.+.+  ++.
T Consensus        50 ~G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d--~~~~~~~~~-~l~~~g~~~~~~~f~PhGi~~~~d~dg~  126 (355)
T 3sre_A           50 NGSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMD--LNEKEPAVS-ELEIIGNTLDISSFNPHGISTFIDDDNT  126 (355)
T ss_dssp             SCCCEEEECTTSEEEEEECCC-----------CCEEEEEE--TTSSSCCEE-ECEEECSSCCGGGCCEEEEEEEECTTCC
T ss_pred             CCcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEe--cCCCCCceE-EEEccCCCCCcCceeeeeeEEEECCCCc
Confidence            3456777888876655542            689999999  553  3322 223332     123566777755  343


Q ss_pred             -eEEEeeC---CCeEEEEEeecCCCceEEEeeec-CCCCceeEEEecCCCCEEEEeeC-----------------CCeEE
Q psy11529        115 -KFAAGSG---ARLISVCYFESENDWWVAKHIKK-PIKSTITCLDWHPNNHLLGCGST-----------------DFKVR  172 (244)
Q Consensus       115 -~l~~~~~---d~~i~i~d~~~~~~~~~~~~~~~-~~~~~v~~~~~~p~~~~l~~~~~-----------------dg~i~  172 (244)
                       +|+++..   +.++.+|+++............. ..-...+++.+.++|++.++...                 .|.|.
T Consensus       127 ~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vy  206 (355)
T 3sre_A          127 VYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVT  206 (355)
T ss_dssp             EEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEE
T ss_pred             EEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEE
Confidence             3544432   56889999987654222222222 22356889999999987776531                 13333


Q ss_pred             EEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEee-CCCcEEEEeCC
Q psy11529        173 VFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTS-HDGSINVRMSQ  240 (244)
Q Consensus       173 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~vwd~~  240 (244)
                      -+|.                    ++......+    -...+.++|+||++.|+.+. ..+.|..|+++
T Consensus       207 r~d~--------------------~~~~~~~~~----l~~pNGia~spDg~~lYvadt~~~~I~~~~~~  251 (355)
T 3sre_A          207 YYSP--------------------NDVRVVAEG----FDFANGINISPDGKYVYIAELLAHKIHVYEKH  251 (355)
T ss_dssp             EECT--------------------TCCEEEEEE----ESSEEEEEECTTSSEEEEEEGGGTEEEEEEEC
T ss_pred             EEEC--------------------CeEEEeecC----CcccCcceECCCCCEEEEEeCCCCeEEEEEEC
Confidence            3332                    221111111    34568999999998776664 56789999875

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=98.14  E-value=0.0016  Score=51.19  Aligned_cols=219  Identities=7%  Similarity=0.006  Sum_probs=112.9

Q ss_pred             ceEEEEE-------cCCCCeEEEecCCC-------eEEEeeeccCCCccee---eeeeccCCCceEEEEeCCC-CCeEEE
Q psy11529         11 PVTTHAW-------NNTRQQLAFTPNNQ-------EVHLYQYEKAANDWSQ---LDVLDGHDLKVTGIDWAPN-TNRIVT   72 (244)
Q Consensus        11 ~v~~~~~-------~~~~~~l~~~~~d~-------~v~v~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~-~~~l~~   72 (244)
                      ....++|       +++|+.|+++...+       .|.+++.... +.+..   ...+... .....++++|+ +.++++
T Consensus       187 ~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~-G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvt  264 (496)
T 3kya_A          187 RIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNAD-GTFDDRSDIQLIAAY-KQCNGATIHPINGELYFN  264 (496)
T ss_dssp             BEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTT-SCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEE
T ss_pred             CCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCC-CceeecccceeeccC-CCceEEEEcCCCCeEEEE
Confidence            4788999       99999666665433       2555543221 12210   0122211 23357788995 444555


Q ss_pred             EeCCccEEEEeeeCC-------CCCc-----------eeeEEEeccCcceEEEEECCCCCeEEEe-eCCCeEEEEEeecC
Q psy11529         73 CSADRNAYVWTQNND-------DKKW-----------KPTLVLLRINRAATCVKWSPLENKFAAG-SGARLISVCYFESE  133 (244)
Q Consensus        73 ~~~d~~i~iwd~~~~-------~~~~-----------~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~i~d~~~~  133 (244)
                      -..++.|..+|  +.       ++..           ...+.........+.++|+|+++.|+.+ .....|+.++.+..
T Consensus       265 d~~~g~V~r~d--~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~  342 (496)
T 3kya_A          265 SYEKGQVFRLD--LVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEI  342 (496)
T ss_dssp             ETTTTEEEEEC--HHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETT
T ss_pred             ECCCCEEEEEe--cccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCC
Confidence            55678899999  54       4432           0111112233456899999999965555 45678888777654


Q ss_pred             CCce----EEEee--ecCC---------CCcee-EEEec-------CCCCEEEEeeCCCeEEEEEeeecccccCCCCC--
Q psy11529        134 NDWW----VAKHI--KKPI---------KSTIT-CLDWH-------PNNHLLGCGSTDFKVRVFSAYIKDIESAPQST--  188 (244)
Q Consensus       134 ~~~~----~~~~~--~~~~---------~~~v~-~~~~~-------p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--  188 (244)
                      ....    ...-.  ..+.         -.... .+...       +++.++++=....+|+.++.. ..+.......  
T Consensus       343 ~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~~-G~v~TiaG~g~~  421 (496)
T 3kya_A          343 KKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTPE-GIVSTYAGRGAS  421 (496)
T ss_dssp             TTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEECTT-CBEEEEEESCTT
T ss_pred             cceecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEeCC-CCEEEEeccccc
Confidence            3210    00000  0000         01233 34443       455555555566778887731 1111000000  


Q ss_pred             -------CCCccccccceeEEecCCCCCCCCeEEEEEecC-CCEEEEeeCCCcEEEEeCCC
Q psy11529        189 -------NWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKD-GNKLCWTSHDGSINVRMSQQ  241 (244)
Q Consensus       189 -------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~vwd~~~  241 (244)
                             .++.  ..+...  ....   -.....++++++ |.++++=.....|+.++++.
T Consensus       422 ~~~~~~~~~G~--~dG~~~--~~a~---f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~  475 (496)
T 3kya_A          422 TSLADGNQWGT--DDGDLR--EVAR---FRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQ  475 (496)
T ss_dssp             HHHHHSCSCCC--CCEETT--TTCC---CSSEEEEEEETTTTEEEEEETTTTEEEEEEECC
T ss_pred             ccccCcccccc--CCCCch--hhhh---cCCCcEEEEECCCCEEEEEeCCCCEEEEEECCC
Confidence                   0000  000000  0001   245688999997 76666666677899988764

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.13  E-value=0.0014  Score=54.93  Aligned_cols=195  Identities=11%  Similarity=0.047  Sum_probs=113.2

Q ss_pred             CCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeec---cCCCceEEEEeCCCCCeEEEEeCCccEEEEeee
Q psy11529          9 INPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLD---GHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQN   85 (244)
Q Consensus         9 ~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~   85 (244)
                      ...|.++...++|++.+ |+.++-|..++..+  +   ....+.   .....|.++...+++...+ |+. +-+..+|  
T Consensus       406 ~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~--~---~~~~~~~~~~~~~~v~~i~~d~~g~lwi-gt~-~Gl~~~~--  475 (781)
T 3v9f_A          406 SNSVLCSLKDSEGNLWF-GTYLGNISYYNTRL--K---KFQIIELEKNELLDVRVFYEDKNKKIWI-GTH-AGVFVID--  475 (781)
T ss_dssp             CSBEEEEEECTTSCEEE-EETTEEEEEECSSS--C---EEEECCSTTTCCCCEEEEEECTTSEEEE-EET-TEEEEEE--
T ss_pred             CcceEEEEECCCCCEEE-EeccCCEEEEcCCC--C---cEEEeccCCCCCCeEEEEEECCCCCEEE-EEC-CceEEEe--
Confidence            46788898888887655 55566788888766  3   222222   1346789999888776554 444 4588888  


Q ss_pred             CCCCCceeeEEEe---ccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecC---CCCceeEEEecCCC
Q psy11529         86 NDDKKWKPTLVLL---RINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKP---IKSTITCLDWHPNN  159 (244)
Q Consensus        86 ~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~---~~~~v~~~~~~p~~  159 (244)
                      ..+++........   .....+.++...++|+..+ |+.++-+..||.+..+.    ......   ....|.++...++|
T Consensus       476 ~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~----~~~~~~~~l~~~~i~~i~~d~~g  550 (781)
T 3v9f_A          476 LASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWI-GTFGGGVGIYTPDMQLV----RKFNQYEGFCSNTINQIYRSSKG  550 (781)
T ss_dssp             SSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEE-EESSSCEEEECTTCCEE----EEECTTTTCSCSCEEEEEECTTS
T ss_pred             CCCCeEEecccCcccccccceeEEEEEcCCCCEEE-EEcCCCEEEEeCCCCeE----EEccCCCCCCCCeeEEEEECCCC
Confidence            6666543222111   0135688999988887544 45433366666544421    122111   23568899998888


Q ss_pred             CEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCC-CCCCCeEEEEEecCCCEEEEeeCCCcEEEEe
Q psy11529        160 HLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSS-SGGGWIHSVAFSKDGNKLCWTSHDGSINVRM  238 (244)
Q Consensus       160 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd  238 (244)
                      ++.+. +.+|.+..||...                  .+ ...+.... -....|.++...++|++.+++ ..| |..++
T Consensus       551 ~lWi~-T~~Glv~~~d~~~------------------~~-~~~~~~~~gl~~~~i~~i~~d~~g~lW~~t-~~G-l~~~~  608 (781)
T 3v9f_A          551 QMWLA-TGEGLVCFPSARN------------------FD-YQVFQRKEGLPNTHIRAISEDKNGNIWAST-NTG-ISCYI  608 (781)
T ss_dssp             CEEEE-ETTEEEEESCTTT------------------CC-CEEECGGGTCSCCCCCEEEECSSSCEEEEC-SSC-EEEEE
T ss_pred             CEEEE-ECCCceEEECCCC------------------Cc-EEEccccCCCCCceEEEEEECCCCCEEEEc-CCc-eEEEE
Confidence            75554 4467558887622                  21 22221110 003457788888888765543 444 55555


Q ss_pred             CC
Q psy11529        239 SQ  240 (244)
Q Consensus       239 ~~  240 (244)
                      .+
T Consensus       609 ~~  610 (781)
T 3v9f_A          609 TS  610 (781)
T ss_dssp             TT
T ss_pred             CC
Confidence            44

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.13  E-value=0.0026  Score=53.15  Aligned_cols=160  Identities=9%  Similarity=-0.071  Sum_probs=95.7

Q ss_pred             CCceEEEEEcCCCCeE-EEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEE-eCCccEEEEeeeC
Q psy11529          9 INPVTTHAWNNTRQQL-AFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTC-SADRNAYVWTQNN   86 (244)
Q Consensus         9 ~~~v~~~~~~~~~~~l-~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~iwd~~~   86 (244)
                      ...+.+++|.+....| ++-...+.|+.+++.+..........+.........|++.+.+..|+.+ ...+.|.+.+  +
T Consensus       423 ~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~--l  500 (791)
T 3m0c_C          423 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVAD--T  500 (791)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEE--T
T ss_pred             CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEe--C
Confidence            3556788998855544 4445567888888865100001122233234456789998866555544 4578899988  5


Q ss_pred             CCCCceeeEEEeccCcceEEEEECCCCCeEEEeeC-C-CeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEE
Q psy11529         87 DDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSG-A-RLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGC  164 (244)
Q Consensus        87 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d-~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~  164 (244)
                      .... ...+ ....-.....|++.|.+..|+.+.. . +.|...+++....    .......-.....|++++.+..|+.
T Consensus       501 dG~~-~~~l-~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~----~~lv~~~l~~P~GLavD~~~~~LYw  574 (791)
T 3m0c_C          501 KGVK-RKTL-FRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI----YSLVTENIQWPNGITLDLLSGRLYW  574 (791)
T ss_dssp             TSSS-EEEE-EECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE----EEEECSSCSCEEEEEEETTTTEEEE
T ss_pred             CCCe-EEEE-EeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCce----EEEEeCCCCCceEEEEecCCCeEEE
Confidence            5433 2222 2234456889999998666666553 2 6777777665432    2222223357889999987766666


Q ss_pred             ee-CCCeEEEEEe
Q psy11529        165 GS-TDFKVRVFSA  176 (244)
Q Consensus       165 ~~-~dg~i~i~d~  176 (244)
                      +. ..+.|..+++
T Consensus       575 aD~~~~~I~~~d~  587 (791)
T 3m0c_C          575 VDSKLHSISSIDV  587 (791)
T ss_dssp             EETTTTEEEEEET
T ss_pred             EeCCCCcEEEEec
Confidence            54 4567888886

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=98.12  E-value=5.3e-05  Score=62.48  Aligned_cols=159  Identities=11%  Similarity=-0.067  Sum_probs=89.5

Q ss_pred             CceEEEEEcCCCCeEEEe-cCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCC-CeEEEEeCCccEEEEeeeCC
Q psy11529         10 NPVTTHAWNNTRQQLAFT-PNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNT-NRIVTCSADRNAYVWTQNND   87 (244)
Q Consensus        10 ~~v~~~~~~~~~~~l~~~-~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~   87 (244)
                      ..+.+++|++.+..|+.+ ...+.|+.+++.+..........+.........+++.+.+ +++++-...+.|.+++  +.
T Consensus       406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d--~d  483 (699)
T 1n7d_A          406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVAD--TK  483 (699)
T ss_dssp             TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEB--SS
T ss_pred             cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEe--cC
Confidence            345678898876666555 3457888888764100001111221112234568888644 4444445578899998  55


Q ss_pred             CCCceeeEEEeccCcceEEEEECCCCCeEEEeeC-C-CeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEe
Q psy11529         88 DKKWKPTLVLLRINRAATCVKWSPLENKFAAGSG-A-RLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCG  165 (244)
Q Consensus        88 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d-~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~  165 (244)
                      .... ..+ ..........++++|.+.+|+.+.. . +.|..++++....    .......-...+.|+|+|++..|+.+
T Consensus       484 g~~~-~~l-~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~----~~l~~~~l~~PnGlavd~~~~~LY~a  557 (699)
T 1n7d_A          484 GVKR-KTL-FREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI----YSLVTENIQWPNGITLDLLSGRLYWV  557 (699)
T ss_dssp             SCCE-EEE-CCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCC----CEESCSSCSSCCCEEECTTTCCEEEE
T ss_pred             CCce-EEE-EeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCe----eEEEeCCCCCccEEEEeccCCEEEEE
Confidence            4331 111 1222345678999997666555543 2 6777766654432    11111222456789999976655544


Q ss_pred             -eCCCeEEEEEe
Q psy11529        166 -STDFKVRVFSA  176 (244)
Q Consensus       166 -~~dg~i~i~d~  176 (244)
                       ...+.|..+++
T Consensus       558 D~~~~~I~~~d~  569 (699)
T 1n7d_A          558 DSKLHSISSIDV  569 (699)
T ss_dssp             ETTTTEEEEECS
T ss_pred             ecCCCeEEEEcc
Confidence             45678988887

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=98.12  E-value=0.00041  Score=51.11  Aligned_cols=189  Identities=9%  Similarity=0.090  Sum_probs=97.0

Q ss_pred             CCCeEEEecCC----CeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCC------ccEEEEeeeCCCC
Q psy11529         20 TRQQLAFTPNN----QEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSAD------RNAYVWTQNNDDK   89 (244)
Q Consensus        20 ~~~~l~~~~~d----~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------~~i~iwd~~~~~~   89 (244)
                      +++.++.|+.+    ..+.+||...  +.+..+..+.........+.+  +++.++.|+.+      ..+.+||  ..+.
T Consensus        55 ~~~lyv~GG~~~~~~~~~~~~d~~~--~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d--~~~~  128 (306)
T 3ii7_A           55 DNVVYILGGSQLFPIKRMDCYNVVK--DSWYSKLGPPTPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYD--TRTE  128 (306)
T ss_dssp             TTEEEEECCBSSSBCCEEEEEETTT--TEEEEEECCSSCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEE--TTTT
T ss_pred             CCEEEEEeCCCCCCcceEEEEeCCC--CeEEECCCCCccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEe--CCCC
Confidence            56677777754    6788889877  656655444322222222333  56667777654      4588888  7776


Q ss_pred             CceeeEEEeccCcceEEEEECCCCCeEEEeeC---------CCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCC
Q psy11529         90 KWKPTLVLLRINRAATCVKWSPLENKFAAGSG---------ARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNH  160 (244)
Q Consensus        90 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---------d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~  160 (244)
                      ++.....+.........+.+  +++.++.|+.         -..+.+||..+.+  |............. ++... +++
T Consensus       129 ~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~r~~~-~~~~~-~~~  202 (306)
T 3ii7_A          129 SWHTKPSMLTQRCSHGMVEA--NGLIYVCGGSLGNNVSGRVLNSCEVYDPATET--WTELCPMIEARKNH-GLVFV-KDK  202 (306)
T ss_dssp             EEEEECCCSSCCBSCEEEEE--TTEEEEECCEESCTTTCEECCCEEEEETTTTE--EEEECCCSSCCBSC-EEEEE-TTE
T ss_pred             ceEeCCCCcCCcceeEEEEE--CCEEEEECCCCCCCCcccccceEEEeCCCCCe--EEECCCccchhhcc-eEEEE-CCE
Confidence            65433222111122222233  5566666653         2346777766653  33332211111122 22222 566


Q ss_pred             EEEEeeCC-----CeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCC----
Q psy11529        161 LLGCGSTD-----FKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHD----  231 (244)
Q Consensus       161 ~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----  231 (244)
                      +++.|+.+     ..+.+||+....                .+.+..+...   ......+.+  ++++++.|+.+    
T Consensus       203 i~v~GG~~~~~~~~~~~~yd~~~~~----------------W~~~~~~p~~---r~~~~~~~~--~~~i~v~GG~~~~~~  261 (306)
T 3ii7_A          203 IFAVGGQNGLGGLDNVEYYDIKLNE----------------WKMVSPMPWK---GVTVKCAAV--GSIVYVLAGFQGVGR  261 (306)
T ss_dssp             EEEECCEETTEEBCCEEEEETTTTE----------------EEECCCCSCC---BSCCEEEEE--TTEEEEEECBCSSSB
T ss_pred             EEEEeCCCCCCCCceEEEeeCCCCc----------------EEECCCCCCC---ccceeEEEE--CCEEEEEeCcCCCee
Confidence            77777643     357788873221                1222222211   222233333  77778888754    


Q ss_pred             -CcEEEEeCCC
Q psy11529        232 -GSINVRMSQQ  241 (244)
Q Consensus       232 -g~i~vwd~~~  241 (244)
                       ..+.+||+++
T Consensus       262 ~~~~~~yd~~~  272 (306)
T 3ii7_A          262 LGHILEYNTET  272 (306)
T ss_dssp             CCEEEEEETTT
T ss_pred             eeeEEEEcCCC
Confidence             4688888875

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=98.11  E-value=0.00069  Score=49.75  Aligned_cols=189  Identities=14%  Similarity=0.101  Sum_probs=95.0

Q ss_pred             CCCeEEEecCC-----CeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCC-----ccEEEEeeeCCCC
Q psy11529         20 TRQQLAFTPNN-----QEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSAD-----RNAYVWTQNNDDK   89 (244)
Q Consensus        20 ~~~~l~~~~~d-----~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~~   89 (244)
                      +++.++.|+.+     ..+.+||..+  ..+..+..+.........+.+  +++.++.|+.+     ..+.+||  ..+.
T Consensus        61 ~~~lyv~GG~~~~~~~~~~~~~d~~~--~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d--~~~~  134 (302)
T 2xn4_A           61 AGLVFAVGGFNGSLRVRTVDSYDPVK--DQWTSVANMRDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYN--IKSN  134 (302)
T ss_dssp             TTEEEEESCBCSSSBCCCEEEEETTT--TEEEEECCCSSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEE--TTTT
T ss_pred             CCEEEEEeCcCCCccccceEEECCCC--CceeeCCCCCccccceEEEEE--CCEEEEEcCCCCCccCceEEEEe--CCCC
Confidence            56677777643     3588888877  556655544322222222333  46666667654     3577788  6776


Q ss_pred             CceeeEEEeccCcceEEEEECCCCCeEEEeeCC-------CeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEE
Q psy11529         90 KWKPTLVLLRINRAATCVKWSPLENKFAAGSGA-------RLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLL  162 (244)
Q Consensus        90 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-------~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l  162 (244)
                      ++.....+.........+.+  +++.++.|+.+       ..+.+||..+.+  |...............+.+  +++++
T Consensus       135 ~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~r~~~~~~~~--~~~iy  208 (302)
T 2xn4_A          135 EWFHVAPMNTRRSSVGVGVV--GGLLYAVGGYDVASRQCLSTVECYNATTNE--WTYIAEMSTRRSGAGVGVL--NNLLY  208 (302)
T ss_dssp             EEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTTTEECCCEEEEETTTTE--EEEECCCSSCCBSCEEEEE--TTEEE
T ss_pred             eEeecCCCCCcccCceEEEE--CCEEEEEeCCCCCCCccccEEEEEeCCCCc--EEECCCCccccccccEEEE--CCEEE
Confidence            65443222211222222233  45666666542       346677765543  3332222111122222222  56777


Q ss_pred             EEeeCCC-----eEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCC-----
Q psy11529        163 GCGSTDF-----KVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDG-----  232 (244)
Q Consensus       163 ~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-----  232 (244)
                      +.|+.++     .+.+||+....                ...+..+...   ......+.  .++++++.|+.++     
T Consensus       209 v~GG~~~~~~~~~~~~yd~~~~~----------------W~~~~~~~~~---r~~~~~~~--~~~~i~v~GG~~~~~~~~  267 (302)
T 2xn4_A          209 AVGGHDGPLVRKSVEVYDPTTNA----------------WRQVADMNMC---RRNAGVCA--VNGLLYVVGGDDGSCNLA  267 (302)
T ss_dssp             EECCBSSSSBCCCEEEEETTTTE----------------EEEECCCSSC---CBSCEEEE--ETTEEEEECCBCSSSBCC
T ss_pred             EECCCCCCcccceEEEEeCCCCC----------------EeeCCCCCCc---cccCeEEE--ECCEEEEECCcCCCcccc
Confidence            7776543     68888873221                1222222111   11122222  3777777877653     


Q ss_pred             cEEEEeCCC
Q psy11529        233 SINVRMSQQ  241 (244)
Q Consensus       233 ~i~vwd~~~  241 (244)
                      .+.+||+++
T Consensus       268 ~v~~yd~~~  276 (302)
T 2xn4_A          268 SVEYYNPTT  276 (302)
T ss_dssp             CEEEEETTT
T ss_pred             cEEEEcCCC
Confidence            488888875

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=98.10  E-value=0.0014  Score=48.85  Aligned_cols=193  Identities=11%  Similarity=0.092  Sum_probs=102.3

Q ss_pred             CceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCCCC
Q psy11529         10 NPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDK   89 (244)
Q Consensus        10 ~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~   89 (244)
                      ..+.++.+.+ ++.+++ +..+.|.  ...+.+..++.+.....+...+..+.+.+++..++.+ .++.|..-+  -...
T Consensus        80 ~~~~~i~~~~-~~~~~~-g~~g~i~--~S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~S~--DgG~  152 (327)
T 2xbg_A           80 YRFNSVSFQG-NEGWIV-GEPPIML--HTTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYRTK--DSGK  152 (327)
T ss_dssp             CEEEEEEEET-TEEEEE-EETTEEE--EESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEEES--STTS
T ss_pred             ccEEEEEecC-CeEEEE-ECCCeEE--EECCCCCCceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEEEc--CCCC
Confidence            3678899976 445554 4456443  3333224455543332344557788877666665554 455543221  1122


Q ss_pred             CceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEeeCCC
Q psy11529         90 KWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDF  169 (244)
Q Consensus        90 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg  169 (244)
                      .+...  .......+..+.+.|++.+++++.. +.+..- .+.+...+...  ..+....+..+.+.|++++++. +.+|
T Consensus       153 tW~~~--~~~~~~~~~~~~~~~~~~~~~~g~~-G~~~~S-~d~gG~tW~~~--~~~~~~~~~~~~~~~~g~~~~~-~~~G  225 (327)
T 2xbg_A          153 NWQAL--VQEAIGVMRNLNRSPSGEYVAVSSR-GSFYST-WEPGQTAWEPH--NRTTSRRLHNMGFTPDGRLWMI-VNGG  225 (327)
T ss_dssp             SEEEE--ECSCCCCEEEEEECTTSCEEEEETT-SSEEEE-ECTTCSSCEEE--ECCSSSCEEEEEECTTSCEEEE-ETTT
T ss_pred             CCEEe--ecCCCcceEEEEEcCCCcEEEEECC-CcEEEE-eCCCCCceeEC--CCCCCCccceeEECCCCCEEEE-eCCc
Confidence            33222  2334567889999998887776654 433321 12212222222  2334567889999998876644 5678


Q ss_pred             eEEEEEeeecccccCCCCCCCCccccccceeEEecCC-CCCCCCeEEEEEecCCCEEEEeeCCCcEE
Q psy11529        170 KVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNS-SSGGGWIHSVAFSKDGNKLCWTSHDGSIN  235 (244)
Q Consensus       170 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~i~  235 (244)
                      .+++.+..                  .++.-..+... -.....+..+++.+++.+++++. +|.|.
T Consensus       226 ~~~~s~~D------------------~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i~  273 (327)
T 2xbg_A          226 KIAFSDPD------------------NSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGALL  273 (327)
T ss_dssp             EEEEEETT------------------EEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCEE
T ss_pred             eEEEecCC------------------CCCeeEeccCCcccCCcceEEEEecCCCEEEEEeC-CCeEE
Confidence            77766310                  01111111100 00034578888988877666554 66553

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=98.09  E-value=0.0026  Score=51.78  Aligned_cols=156  Identities=9%  Similarity=-0.012  Sum_probs=94.1

Q ss_pred             CceEEEEEcCCCCeEEEe-cCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEE-eCCccEEEEeeeCC
Q psy11529         10 NPVTTHAWNNTRQQLAFT-PNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTC-SADRNAYVWTQNND   87 (244)
Q Consensus        10 ~~v~~~~~~~~~~~l~~~-~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~iwd~~~~   87 (244)
                      ....+++|++.+..|..+ ...+.|..+++++  .. .....+...-.....+++.+.+..|+.+ ...+.|.+.+  ..
T Consensus        40 ~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g--~~-~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~--~d  114 (619)
T 3s94_A           40 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNK--TE-SVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSN--LD  114 (619)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEE--TT
T ss_pred             CceEEEEEEeCCCEEEEEECCCCeEEEEEccC--CC-ceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEE--CC
Confidence            456789999866665554 3467888888876  21 1122333223567899999865555544 4578899999  54


Q ss_pred             CCCceeeEEEeccCcceEEEEECCCCCeEEEeeC--CCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEe
Q psy11529         88 DKKWKPTLVLLRINRAATCVKWSPLENKFAAGSG--ARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCG  165 (244)
Q Consensus        88 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~  165 (244)
                      ... ...+ ....-.....+++.|.+..|+.+..  .+.|...+++....    .......-.....++++++++.|+.+
T Consensus       115 G~~-~~~l-~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~----~~l~~~~~~~P~Glald~~~~~LY~a  188 (619)
T 3s94_A          115 GSL-RKVL-FWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR----FIIINSEIYWPNGLTLDYEEQKLYWA  188 (619)
T ss_dssp             SCS-CEEE-ECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSC----EEEECSSCSSEEEEEEETTTTEEEEE
T ss_pred             CCC-EEEE-EeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCce----EEEEeCCCCCCcEEEEEccCCEEEEE
Confidence            433 2222 2234456789999998666666553  35566655554433    12222223567899999976666655


Q ss_pred             e-CCCeEEEEEe
Q psy11529        166 S-TDFKVRVFSA  176 (244)
Q Consensus       166 ~-~dg~i~i~d~  176 (244)
                      . ..+.|..+|+
T Consensus       189 D~~~~~I~~~~~  200 (619)
T 3s94_A          189 DAKLNFIHKSNL  200 (619)
T ss_dssp             ETTTCCEEEESS
T ss_pred             eCCCCeEEEecC
Confidence            4 4567887776

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=98.08  E-value=0.0016  Score=49.04  Aligned_cols=103  Identities=10%  Similarity=0.060  Sum_probs=60.9

Q ss_pred             CceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeec---cCCCceEEEEeCCC---CCeEEEEeC-C-----c
Q psy11529         10 NPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLD---GHDLKVTGIDWAPN---TNRIVTCSA-D-----R   77 (244)
Q Consensus        10 ~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~---~~~l~~~~~-d-----~   77 (244)
                      ..-..++|.|+|+++++ ...+.|++++ ..   ....+..+.   ........++|+|+   +..|+.+.. .     +
T Consensus        31 ~~P~~ia~~pdG~l~V~-e~~g~I~~i~-~g---~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~  105 (352)
T 2ism_A           31 EVPWALAFLPDGGMLIA-ERPGRIRLFR-EG---RLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRN  105 (352)
T ss_dssp             SCEEEEEECTTSCEEEE-ETTTEEEEEE-TT---EEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEE
T ss_pred             CCceEEEEcCCCeEEEE-eCCCeEEEEE-CC---CccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCcc
Confidence            45678999999986655 4569999998 33   222222221   22456789999998   555554433 2     6


Q ss_pred             cEEEEeeeCCCCCce---eeEE-Ee---ccCcceEEEEECCCCCeEEEe
Q psy11529         78 NAYVWTQNNDDKKWK---PTLV-LL---RINRAATCVKWSPLENKFAAG  119 (244)
Q Consensus        78 ~i~iwd~~~~~~~~~---~~~~-~~---~~~~~v~~~~~~~~~~~l~~~  119 (244)
                      .|..++  ...+...   ..+. +.   ........++|.|+|.++++.
T Consensus       106 ~v~r~~--~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~  152 (352)
T 2ism_A          106 QVVRLR--HLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTT  152 (352)
T ss_dssp             EEEEEE--ECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEEC
T ss_pred             EEEEEE--eCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEE
Confidence            677777  4443211   1111 22   111234689999999765554

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=98.08  E-value=0.0018  Score=49.48  Aligned_cols=151  Identities=9%  Similarity=0.068  Sum_probs=93.5

Q ss_pred             cCCCCeEEEecCCCeEEEeeeccCCCcceeeeeecc--CCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCCCCC-----
Q psy11529         18 NNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDG--HDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKK-----   90 (244)
Q Consensus        18 ~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~-----   90 (244)
                      ..+|..++++- ++.||.-++... ..++.+ .+..  .-..|..+..+|+|++||..+ +..|.|-.  +..+.     
T Consensus        29 ~~n~t~i~~a~-~n~iR~~~i~~~-~~Yk~L-~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~--LP~~~~~~~~  102 (452)
T 3pbp_A           29 SQNGTRIVFIQ-DNIIRWYNVLTD-SLYHSL-NFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVME--VPWGYSNVED  102 (452)
T ss_dssp             ETTTTEEEEEE-TTEEEEEETTTC-SSCEEE-ECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEE--CCTTCSCCCC
T ss_pred             EcCCCEEEEEE-CCEEEEEECCCC-CcceEE-ecCcccccCceeEEEECCCCCEEEEec-CCeEEEEE--ecCccccCcc
Confidence            34566666653 578888887641 222222 2221  122578899999999999886 55888888  44221     


Q ss_pred             ------cee-eEEEec----cCcceEEEEECCC---CCeEEEeeCCCeEEEEEeecCCCceE-EEe-----eecCCCCce
Q psy11529         91 ------WKP-TLVLLR----INRAATCVKWSPL---ENKFAAGSGARLISVCYFESENDWWV-AKH-----IKKPIKSTI  150 (244)
Q Consensus        91 ------~~~-~~~~~~----~~~~v~~~~~~~~---~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~-----~~~~~~~~v  150 (244)
                            ... ...+..    ....|..+.|||-   +..|++-..|+.|++||+........ ...     ........+
T Consensus       103 ~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev  182 (452)
T 3pbp_A          103 VSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDI  182 (452)
T ss_dssp             HHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCE
T ss_pred             cccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceE
Confidence                  010 111111    2467999999996   56799999999999999987432111 110     001122578


Q ss_pred             eEEEecCCCCEEEE--eeCCCeEEEE
Q psy11529        151 TCLDWHPNNHLLGC--GSTDFKVRVF  174 (244)
Q Consensus       151 ~~~~~~p~~~~l~~--~~~dg~i~i~  174 (244)
                      .+++|.+++-.|..  .+..|.|+-.
T Consensus       183 ~S~~Fg~~~lTLYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          183 TDLEFSKDGLTLYCLNTTEGGDIFAF  208 (452)
T ss_dssp             EEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred             EEEEEcCCCcEEEEEecCCCCCEEEE
Confidence            89999998865655  4477877543

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=98.07  E-value=0.0018  Score=50.54  Aligned_cols=110  Identities=10%  Similarity=0.052  Sum_probs=62.9

Q ss_pred             CceEEEEeCCCCCeEEEEeCCccEEEEeeeCCCCCceeeEEEec------cCcceEEEEECCC---CCeEEEeeC-----
Q psy11529         56 LKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLR------INRAATCVKWSPL---ENKFAAGSG-----  121 (244)
Q Consensus        56 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~------~~~~v~~~~~~~~---~~~l~~~~~-----  121 (244)
                      ....+++|.|+|+.+++-...+.|.+++  ..++.......+..      .......|+|+|+   +..|+++..     
T Consensus        27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~--~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~  104 (454)
T 1cru_A           27 NKPHALLWGPDNQIWLTERATGKILRVN--PESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPK  104 (454)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEEC--TTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTT
T ss_pred             CCceEEEEcCCCcEEEEEcCCCEEEEEE--CCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccC
Confidence            3557999999998777654335788887  55555332222211      2455679999996   555555432     


Q ss_pred             --------CCeEEEEEeecCCC-c---eEEEe-eecCCCCceeEEEecCCCCEEEEeeC
Q psy11529        122 --------ARLISVCYFESEND-W---WVAKH-IKKPIKSTITCLDWHPNNHLLGCGST  167 (244)
Q Consensus       122 --------d~~i~i~d~~~~~~-~---~~~~~-~~~~~~~~v~~~~~~p~~~~l~~~~~  167 (244)
                              ...|.-+++..... .   ..... ...........++|.|||.++++.++
T Consensus       105 ~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd  163 (454)
T 1cru_A          105 STDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD  163 (454)
T ss_dssp             C--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred             CCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence                    23555566544321 0   01111 11112245789999999987666443

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=98.03  E-value=0.00062  Score=50.21  Aligned_cols=189  Identities=11%  Similarity=0.111  Sum_probs=95.7

Q ss_pred             CCCeEEEecC----C-----CeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCC-----ccEEEEeee
Q psy11529         20 TRQQLAFTPN----N-----QEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSAD-----RNAYVWTQN   85 (244)
Q Consensus        20 ~~~~l~~~~~----d-----~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~iwd~~   85 (244)
                      ++++++.|+.    +     ..+.+||..+  ..+..+..+.........+.+  +++.++.|+.+     ..+.+||  
T Consensus        70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~--~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd--  143 (308)
T 1zgk_A           70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMT--NQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYE--  143 (308)
T ss_dssp             TTEEEEECCEEEETTEEEECCCEEEEETTT--TEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEE--
T ss_pred             CCEEEEECCCcCCCCCCeecceEEEECCCC--CeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEEC--
Confidence            5667777765    2     3578888877  555555444322222223333  46666666543     3577888  


Q ss_pred             CCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCC-----CeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCC
Q psy11529         86 NDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGA-----RLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNH  160 (244)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~  160 (244)
                      ..+.++.....+.........+.+  +++.++.|+.+     ..+.+||..+.+  |...............+.+  +++
T Consensus       144 ~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~r~~~~~~~~--~~~  217 (308)
T 1zgk_A          144 PERDEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNE--WRMITAMNTIRSGAGVCVL--HNC  217 (308)
T ss_dssp             TTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTE--EEECCCCSSCCBSCEEEEE--TTE
T ss_pred             CCCCeEeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCe--EeeCCCCCCccccceEEEE--CCE
Confidence            677665433222222222223333  55666776654     347777765542  3322221111122222222  567


Q ss_pred             EEEEeeCC-----CeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCC----
Q psy11529        161 LLGCGSTD-----FKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHD----  231 (244)
Q Consensus       161 ~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----  231 (244)
                      +++.|+.+     ..+.+||+....                ...+..+...   ......+.  -++++++.|+.+    
T Consensus       218 iyv~GG~~~~~~~~~v~~yd~~~~~----------------W~~~~~~p~~---r~~~~~~~--~~~~i~v~GG~~~~~~  276 (308)
T 1zgk_A          218 IYAAGGYDGQDQLNSVERYDVETET----------------WTFVAPMKHR---RSALGITV--HQGRIYVLGGYDGHTF  276 (308)
T ss_dssp             EEEECCBCSSSBCCCEEEEETTTTE----------------EEECCCCSSC---CBSCEEEE--ETTEEEEECCBCSSCB
T ss_pred             EEEEeCCCCCCccceEEEEeCCCCc----------------EEECCCCCCC---ccceEEEE--ECCEEEEEcCcCCCcc
Confidence            77777654     458888874321                1122222211   22222222  267777777754    


Q ss_pred             -CcEEEEeCCC
Q psy11529        232 -GSINVRMSQQ  241 (244)
Q Consensus       232 -g~i~vwd~~~  241 (244)
                       ..+.+||+++
T Consensus       277 ~~~v~~yd~~~  287 (308)
T 1zgk_A          277 LDSVECYDPDT  287 (308)
T ss_dssp             CCEEEEEETTT
T ss_pred             cceEEEEcCCC
Confidence             3578888865

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=97.99  E-value=0.001  Score=50.21  Aligned_cols=106  Identities=8%  Similarity=-0.098  Sum_probs=61.4

Q ss_pred             CceEEEEeCCCCCeEEEEeCCccEEEEeeeCCCCCceeeEEE---eccCcceEEEEECCC---CCeEEEeeC----C---
Q psy11529         56 LKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVL---LRINRAATCVKWSPL---ENKFAAGSG----A---  122 (244)
Q Consensus        56 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~---~~~l~~~~~----d---  122 (244)
                      .....++|.|+|++++ +..++.|.+++  . +++ .....+   .........++++|+   +..|+++..    +   
T Consensus        29 ~~P~~ia~~pdG~l~V-~e~~g~I~~~d--~-~G~-~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~  103 (354)
T 3a9g_A           29 EVPWSIAPLGGGRYLV-TERPGRLVLIS--P-SGK-KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHI  103 (354)
T ss_dssp             SCEEEEEEEETTEEEE-EETTTEEEEEC--S-SCE-EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCE
T ss_pred             CCCeEEEEcCCCeEEE-EeCCCEEEEEe--C-CCc-eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCc
Confidence            4567899999998555 45669998887  3 343 222211   112356889999998   555555443    2   


Q ss_pred             -CeEEEEEeecCCC-ce---EE-EeeecCCCCceeEEEecCCCCEEEEee
Q psy11529        123 -RLISVCYFESEND-WW---VA-KHIKKPIKSTITCLDWHPNNHLLGCGS  166 (244)
Q Consensus       123 -~~i~i~d~~~~~~-~~---~~-~~~~~~~~~~v~~~~~~p~~~~l~~~~  166 (244)
                       ..|..|+...... ..   .. .............++|.|||.++++.+
T Consensus       104 ~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G  153 (354)
T 3a9g_A          104 RNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTG  153 (354)
T ss_dssp             EEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECC
T ss_pred             ceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEEC
Confidence             5677777655411 00   11 111111122456799999998766643

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=97.94  E-value=0.0031  Score=47.54  Aligned_cols=105  Identities=9%  Similarity=0.040  Sum_probs=61.0

Q ss_pred             CCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeee---ccCCCceEEEEeCCC---CCeEEEEeC----C--
Q psy11529          9 INPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVL---DGHDLKVTGIDWAPN---TNRIVTCSA----D--   76 (244)
Q Consensus         9 ~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~---~~~l~~~~~----d--   76 (244)
                      -..-..++|.|+|+++++ ..++.|++++...   . ..+..+   .........++++|+   +..|+.+..    +  
T Consensus        28 l~~P~~ia~~pdG~l~V~-e~~g~I~~~d~~G---~-~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~  102 (354)
T 3a9g_A           28 LEVPWSIAPLGGGRYLVT-ERPGRLVLISPSG---K-KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGH  102 (354)
T ss_dssp             CSCEEEEEEEETTEEEEE-ETTTEEEEECSSC---E-EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGC
T ss_pred             CCCCeEEEEcCCCeEEEE-eCCCEEEEEeCCC---c-eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCC
Confidence            355678999999986655 4569999887433   2 233222   122456889999997   444544332    3  


Q ss_pred             --ccEEEEeeeCCCC--Cce---eeEE-Eec-cCcceEEEEECCCCCeEEEee
Q psy11529         77 --RNAYVWTQNNDDK--KWK---PTLV-LLR-INRAATCVKWSPLENKFAAGS  120 (244)
Q Consensus        77 --~~i~iwd~~~~~~--~~~---~~~~-~~~-~~~~v~~~~~~~~~~~l~~~~  120 (244)
                        ..|..|+  ....  ...   ..+. +.. .......++|.|+|.++++.+
T Consensus       103 ~~~~v~r~~--~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G  153 (354)
T 3a9g_A          103 IRNRVIRGR--LDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTG  153 (354)
T ss_dssp             EEEEEEEEE--ECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECC
T ss_pred             cceEEEEEE--ECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEEC
Confidence              5677777  4433  111   1111 111 122356799999998666543

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.93  E-value=0.0001  Score=60.84  Aligned_cols=176  Identities=15%  Similarity=0.133  Sum_probs=97.5

Q ss_pred             CCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEe-CCccEEEEeeeCCC----CCceeeEEEeccCcce
Q psy11529         30 NQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCS-ADRNAYVWTQNNDD----KKWKPTLVLLRINRAA  104 (244)
Q Consensus        30 d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~----~~~~~~~~~~~~~~~v  104 (244)
                      .+.|+..++.+  .  .....+. ....+..++|++.+..|+.+. ..+.|+.++  +..    .... .. +.......
T Consensus       385 ~~~I~~id~~~--~--~~~~~~~-~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~--~~g~~~~~~~~-~~-i~~~~~~P  455 (699)
T 1n7d_A          385 RHEVRKMTLDR--S--EYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQ--LDRAHGVSSYD-TV-ISRDIQAP  455 (699)
T ss_dssp             TTC-CEECTTS--C--CEECCSC-CCTTCCCCEEETTTTEEEECCTTTTSBEEEE--SCCCCC-CCCC-CB-CCSCC--C
T ss_pred             ccceEEEeCCC--C--cceeeec-cCcceEEEccccccCeEEEEecCCCeEEEEe--cCCCCCCcceE-EE-EeCCCCCc
Confidence            45778788766  3  2222222 234566899998766666553 467888888  443    1111 11 11112345


Q ss_pred             EEEEECCCCCe-EEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEeeC-C-CeEEEEEeeeccc
Q psy11529        105 TCVKWSPLENK-FAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGST-D-FKVRVFSAYIKDI  181 (244)
Q Consensus       105 ~~~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~-d-g~i~i~d~~~~~~  181 (244)
                      ..+++.+.+.. +++-...+.|.+++++....    .............++++|.+.+|+.+.. . +.|..+++.    
T Consensus       456 ~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~----~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~d----  527 (699)
T 1n7d_A          456 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR----KTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN----  527 (699)
T ss_dssp             CCEECCCSSSBCEECCTTTSCEEEEBSSSCCE----EEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSS----
T ss_pred             ceEEEEeeCCcEEEEeccCCeEEEEecCCCce----EEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCC----
Confidence            67888865444 44444567888888765432    2222222345678999997655554432 2 677777652    


Q ss_pred             ccCCCCCCCCccccccceeEEec-CCCCCCCCeEEEEEecCCCEEEEe-eCCCcEEEEeCC
Q psy11529        182 ESAPQSTNWGSKSTLGNCLVELN-NSSSGGGWIHSVAFSKDGNKLCWT-SHDGSINVRMSQ  240 (244)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~vwd~~  240 (244)
                                     +.....+. ..   -.....|+|+|++..|+.+ +..+.|.++++.
T Consensus       528 ---------------G~~~~~l~~~~---l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~d  570 (699)
T 1n7d_A          528 ---------------GVDIYSLVTEN---IQWPNGITLDLLSGRLYWVDSKLHSISSIDVN  570 (699)
T ss_dssp             ---------------SCCCCEESCSS---CSSCCCEEECTTTCCEEEEETTTTEEEEECSS
T ss_pred             ---------------CCCeeEEEeCC---CCCccEEEEeccCCEEEEEecCCCeEEEEccC
Confidence                           22221221 11   3445789999876655544 456678888875

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=97.92  E-value=0.0058  Score=49.85  Aligned_cols=195  Identities=7%  Similarity=-0.072  Sum_probs=114.7

Q ss_pred             CceEEEEEcCCCCeEEE-ecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEE-eCCccEEEEeeeCC
Q psy11529         10 NPVTTHAWNNTRQQLAF-TPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTC-SADRNAYVWTQNND   87 (244)
Q Consensus        10 ~~v~~~~~~~~~~~l~~-~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~iwd~~~~   87 (244)
                      ..+.+++|++.+..|.. -..++.|+.+++++  ...+  ..+.........+++.+.+..|+.+ ...+.|.+.+  +.
T Consensus        37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g--~~~~--~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~--~d  110 (628)
T 4a0p_A           37 KEASALDFDVTDNRIYWTDISLKTISRAFMNG--SALE--HVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSK--LD  110 (628)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTS--CSCE--EEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEE--TT
T ss_pred             CceEEEEEECCCCEEEEEECCCCeEEEEECCC--CCcE--EEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEe--cC
Confidence            35678999986665554 45578898888876  3112  2222222456788888765555544 4467888888  54


Q ss_pred             CCCceeeEEEeccCcceEEEEECCCCCeEEEeeC--CCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEe
Q psy11529         88 DKKWKPTLVLLRINRAATCVKWSPLENKFAAGSG--ARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCG  165 (244)
Q Consensus        88 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~  165 (244)
                      ... ...+ ....-.....+++.|....|+....  .+.|...+++....    ..... .-.....++++++++.|+.+
T Consensus       111 G~~-~~~l-~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~----~~l~~-~~~~P~GlalD~~~~~LY~a  183 (628)
T 4a0p_A          111 GQH-RQVL-VWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSER----TTLVP-NVGRANGLTIDYAKRRLYWT  183 (628)
T ss_dssp             STT-CEEE-ECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC----EEEEC-SCSSEEEEEEETTTTEEEEE
T ss_pred             CCc-EEEE-EeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCce----EEEEC-CCCCcceEEEccccCEEEEE
Confidence            433 2222 2234456789999997666666553  45677666665543    11122 33577899999987766665


Q ss_pred             e-CCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCC
Q psy11529        166 S-TDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQ  240 (244)
Q Consensus       166 ~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~  240 (244)
                      . ..+.|..+|+..                   .....+...   ......+++.. +.++.+-...+.|...|..
T Consensus       184 D~~~~~I~~~d~dG-------------------~~~~v~~~~---l~~P~glav~~-~~ly~tD~~~~~I~~~dk~  236 (628)
T 4a0p_A          184 DLDTNLIESSNMLG-------------------LNREVIADD---LPHPFGLTQYQ-DYIYWTDWSRRSIERANKT  236 (628)
T ss_dssp             ETTTTEEEEEETTS-------------------CSCEEEEEC---CSCEEEEEEET-TEEEEEETTTTEEEEEETT
T ss_pred             ECCCCEEEEEcCCC-------------------CceEEeecc---CCCceEEEEEC-CEEEEecCCCCEEEEEECC
Confidence            4 457888888731                   111112222   33455777754 3344444446777777643

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=97.90  E-value=0.0021  Score=48.43  Aligned_cols=140  Identities=14%  Similarity=0.099  Sum_probs=69.0

Q ss_pred             CCCeEEEecC-C---------CeEEEeeeccCCCcceeeeeec-cCCCceEEEEeCCCCCeEEEEeCC------------
Q psy11529         20 TRQQLAFTPN-N---------QEVHLYQYEKAANDWSQLDVLD-GHDLKVTGIDWAPNTNRIVTCSAD------------   76 (244)
Q Consensus        20 ~~~~l~~~~~-d---------~~v~v~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d------------   76 (244)
                      ++++++.|+. +         ..+.+||..+  ..|..+.... .......++.  .+++.++.|+.+            
T Consensus        65 ~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~--~~W~~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~  140 (357)
T 2uvk_A           65 DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKT--NSWVKLMSHAPMGMAGHVTFV--HNGKAYVTGGVNQNIFNGYFEDLN  140 (357)
T ss_dssp             TTEEEEECCEEECTTSCEEECCCEEEEETTT--TEEEECSCCCSSCCSSEEEEE--ETTEEEEEECCCHHHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCCCccceeeccEEEEeCCC--CcEEECCCCCCcccccceEEE--ECCEEEEEeCcCCCcCcccccchh
Confidence            5667777765 2         4688888877  6566554443 1112222232  456777777654            


Q ss_pred             ---------------------------ccEEEEeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeC------CC
Q psy11529         77 ---------------------------RNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSG------AR  123 (244)
Q Consensus        77 ---------------------------~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------d~  123 (244)
                                                 ..+.+||  ..+.++.....+......-.+++.. +++.++.|+.      ..
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd--~~~~~W~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~  217 (357)
T 2uvk_A          141 EAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFD--PSTQQWSYAGESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTD  217 (357)
T ss_dssp             HHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEE--TTTTEEEEEEECSSCCCBSCEEEEE-TTEEEEECCEEETTEECC
T ss_pred             hcCCcccchhhhhhhhccccccccCCcccEEEEe--CCCCcEEECCCCCCCCcccccEEEE-CCEEEEEeeecCCCcccC
Confidence                                       4688888  7777765543322111111223322 4556666653      23


Q ss_pred             eEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEee
Q psy11529        124 LISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGS  166 (244)
Q Consensus       124 ~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~  166 (244)
                      .+.+||++.....|................+...++++++.|+
T Consensus       218 ~v~~~d~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~iyv~GG  260 (357)
T 2uvk_A          218 AVFELDFTGNNLKWNKLAPVSSPDGVAGGFAGISNDSLIFAGG  260 (357)
T ss_dssp             CEEEEECC---CEEEECCCSSTTTCCBSCEEEEETTEEEEECC
T ss_pred             ceEEEEecCCCCcEEecCCCCCCcccccceEEEECCEEEEEcC
Confidence            4667776444443433322211111111112223566777776

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.90  E-value=0.0032  Score=46.13  Aligned_cols=189  Identities=10%  Similarity=0.069  Sum_probs=95.6

Q ss_pred             CCCeEEEec-CC-----CeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCC-----ccEEEEeeeCCC
Q psy11529         20 TRQQLAFTP-NN-----QEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSAD-----RNAYVWTQNNDD   88 (244)
Q Consensus        20 ~~~~l~~~~-~d-----~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~   88 (244)
                      ++..++.|+ .+     ..+.+||..+  +.+..+..+.........+..  ++..++.|+.+     ..+.+||  ..+
T Consensus        14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~--~~W~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~~~~~~d--~~~   87 (301)
T 2vpj_A           14 NEVLLVVGGFGSQQSPIDVVEKYDPKT--QEWSFLPSITRKRRYVASVSL--HDRIYVIGGYDGRSRLSSVECLD--YTA   87 (301)
T ss_dssp             CEEEEEECCEETTTEECCCEEEEETTT--TEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEE--TTC
T ss_pred             CCEEEEEeCccCCCcceeEEEEEcCCC--CeEEeCCCCChhhccccEEEE--CCEEEEEcCCCCCccCceEEEEE--CCC
Confidence            456777777 32     4688899877  555555443322222222222  46666777654     4688888  677


Q ss_pred             CC---ceeeEEEeccCcceEEEEECCCCCeEEEeeCC-----CeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCC
Q psy11529         89 KK---WKPTLVLLRINRAATCVKWSPLENKFAAGSGA-----RLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNH  160 (244)
Q Consensus        89 ~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~  160 (244)
                      .+   +.....+.........+.+  +++.++.|+.+     ..+.+||..+.+  |...............+.+  +++
T Consensus        88 ~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~--W~~~~~~p~~r~~~~~~~~--~~~  161 (301)
T 2vpj_A           88 DEDGVWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQ--WSMLGDMQTAREGAGLVVA--SGV  161 (301)
T ss_dssp             CTTCCCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTE--EEEEEECSSCCBSCEEEEE--TTE
T ss_pred             CCCCeeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCe--EEECCCCCCCcccceEEEE--CCE
Confidence            66   5443222222222223333  56667776643     346677765543  3333222211122222222  567


Q ss_pred             EEEEeeCC-----CeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCC----
Q psy11529        161 LLGCGSTD-----FKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHD----  231 (244)
Q Consensus       161 ~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----  231 (244)
                      +++.|+.+     ..+.+||+.+..                .+.+..+...   ......+.+  ++++++.|+.+    
T Consensus       162 iyv~GG~~~~~~~~~~~~~d~~~~~----------------W~~~~~~p~~---r~~~~~~~~--~~~i~v~GG~~~~~~  220 (301)
T 2vpj_A          162 IYCLGGYDGLNILNSVEKYDPHTGH----------------WTNVTPMATK---RSGAGVALL--NDHIYVVGGFDGTAH  220 (301)
T ss_dssp             EEEECCBCSSCBCCCEEEEETTTTE----------------EEEECCCSSC---CBSCEEEEE--TTEEEEECCBCSSSB
T ss_pred             EEEECCCCCCcccceEEEEeCCCCc----------------EEeCCCCCcc---cccceEEEE--CCEEEEEeCCCCCcc
Confidence            77777654     357788873221                1222112211   222222222  67777777764    


Q ss_pred             -CcEEEEeCCC
Q psy11529        232 -GSINVRMSQQ  241 (244)
Q Consensus       232 -g~i~vwd~~~  241 (244)
                       ..+.+||+++
T Consensus       221 ~~~v~~yd~~~  231 (301)
T 2vpj_A          221 LSSVEAYNIRT  231 (301)
T ss_dssp             CCCEEEEETTT
T ss_pred             cceEEEEeCCC
Confidence             4588888865

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=97.88  E-value=0.0029  Score=46.78  Aligned_cols=148  Identities=10%  Similarity=0.078  Sum_probs=73.5

Q ss_pred             cCCCCeEEEecC-----C------CeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCC--------cc
Q psy11529         18 NNTRQQLAFTPN-----N------QEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSAD--------RN   78 (244)
Q Consensus        18 ~~~~~~l~~~~~-----d------~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--------~~   78 (244)
                      ..+++.++.|+.     .      ..+.+||..+  +.+..+..+.........+.+  +++.++.|+.+        ..
T Consensus        43 ~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~--~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~  118 (315)
T 4asc_A           43 TKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLD--SEWLGMPPLPSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDS  118 (315)
T ss_dssp             CTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTT--TEEEECCCBSSCEESCEEEEE--TTEEEEECCEESSTTCCBCCC
T ss_pred             EECCEEEEEcCcccCCCCCccccccceEEecCCC--CeEEECCCCCcchhceeEEEE--CCEEEEEeCCcCCCCCcccce
Confidence            346777888873     1      1377778776  555554433321111122222  45666666632        45


Q ss_pred             EEEEeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeC-C-----CeEEEEEeecCCCceEEEeeecCCCCceeE
Q psy11529         79 AYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSG-A-----RLISVCYFESENDWWVAKHIKKPIKSTITC  152 (244)
Q Consensus        79 i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d-----~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~  152 (244)
                      +.+||  ..+.++.....++........+.  -+++.++.|+. +     ..+.+||..+.+  |...............
T Consensus       119 ~~~~d--~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~r~~~~~  192 (315)
T 4asc_A          119 VMCYD--RLSFKWGESDPLPYVVYGHTVLS--HMDLVYVIGGKGSDRKCLNKMCVYDPKKFE--WKELAPMQTARSLFGA  192 (315)
T ss_dssp             EEEEE--TTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCTTSCBCCCEEEEETTTTE--EEECCCCSSCCBSCEE
T ss_pred             EEEEC--CCCCcEeECCCCCCcccceeEEE--ECCEEEEEeCCCCCCcccceEEEEeCCCCe--EEECCCCCCchhceEE
Confidence            88888  77766543332222222222222  24566677665 2     357777766542  3322221111112222


Q ss_pred             EEecCCCCEEEEeeCCC-----eEEEEEee
Q psy11529        153 LDWHPNNHLLGCGSTDF-----KVRVFSAY  177 (244)
Q Consensus       153 ~~~~p~~~~l~~~~~dg-----~i~i~d~~  177 (244)
                      +.+  ++++++.|+.++     .+.+||+.
T Consensus       193 ~~~--~~~iyv~GG~~~~~~~~~~~~yd~~  220 (315)
T 4asc_A          193 TVH--DGRIIVAAGVTDTGLTSSAEVYSIT  220 (315)
T ss_dssp             EEE--TTEEEEEEEECSSSEEEEEEEEETT
T ss_pred             EEE--CCEEEEEeccCCCCccceEEEEECC
Confidence            222  567777776544     47777763

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=97.88  E-value=0.002  Score=44.65  Aligned_cols=150  Identities=13%  Similarity=0.065  Sum_probs=83.6

Q ss_pred             CceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCc--------eEEEEeCCCCCeEEEEeCCccEEE
Q psy11529         10 NPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLK--------VTGIDWAPNTNRIVTCSADRNAYV   81 (244)
Q Consensus        10 ~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~--------v~~~~~~~~~~~l~~~~~d~~i~i   81 (244)
                      ..+.+++|+|+|.+.++  .+|.++-.+..+  .   .-..+.+....        -.++.|.|+|.+.++  .||.|.-
T Consensus        41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t--~---~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr  111 (236)
T 1tl2_A           41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPT--H---DNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYK  111 (236)
T ss_dssp             TTCSEEEECTTSCEEEE--ETTEEEEESCCC--S---TTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEE
T ss_pred             ccceeEEECCCccEEEE--eCCeEEEECCCC--C---CcccccccccEecccccccceEEEECCCCCEEEe--CCCEEEE
Confidence            46779999999998777  567665555422  1   11111111222        368899999988777  5688877


Q ss_pred             EeeeCCCCC---cee--eEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCC-ce--EEEeeecCCCCceeEE
Q psy11529         82 WTQNNDDKK---WKP--TLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESEND-WW--VAKHIKKPIKSTITCL  153 (244)
Q Consensus        82 wd~~~~~~~---~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~-~~--~~~~~~~~~~~~v~~~  153 (244)
                      ++  ..+..   +..  ...-...-..+..+.|.|+|.+.++.  |+.+.-........ .+  .........-....-+
T Consensus       112 ~~--pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l  187 (236)
T 1tl2_A          112 AS--PPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFL  187 (236)
T ss_dssp             ES--CCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEE
T ss_pred             eC--CCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEE
Confidence            77  42221   111  11111122567999999999887776  67643222111110 00  0111111222345557


Q ss_pred             EecCCCCEEEEeeCCCeEEEEEe
Q psy11529        154 DWHPNNHLLGCGSTDFKVRVFSA  176 (244)
Q Consensus       154 ~~~p~~~~l~~~~~dg~i~i~d~  176 (244)
                      .|.|++.+.++.  +|  ++|..
T Consensus       188 ~f~~~G~l~~v~--~g--~~Y~~  206 (236)
T 1tl2_A          188 FFSSVGTLFGVQ--GG--KFYED  206 (236)
T ss_dssp             EECTTSCEEEEE--TT--EEEEE
T ss_pred             EECCCCcEEEEe--CC--eEEec
Confidence            799999877765  77  44544

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.87  E-value=0.0048  Score=47.22  Aligned_cols=158  Identities=18%  Similarity=0.096  Sum_probs=93.4

Q ss_pred             CCCCCeEEEEeCCccEEEEeeeCCCCCceeeEEEec--cCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCC-c----
Q psy11529         64 APNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLR--INRAATCVKWSPLENKFAAGSGARLISVCYFESEND-W----  136 (244)
Q Consensus        64 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~-~----  136 (244)
                      +.+|..++.+- ++.||.-+  +..+..-..+....  .-..+..+..+|+|++||..+. ..|.|..+..+.. .    
T Consensus        29 ~~n~t~i~~a~-~n~iR~~~--i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~  104 (452)
T 3pbp_A           29 SQNGTRIVFIQ-DNIIRWYN--VLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVS  104 (452)
T ss_dssp             ETTTTEEEEEE-TTEEEEEE--TTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHH
T ss_pred             EcCCCEEEEEE-CCEEEEEE--CCCCCcceEEecCcccccCceeEEEECCCCCEEEEecC-CeEEEEEecCccccCcccc
Confidence            34566666553 57788878  44333222333221  1236788999999999999864 5688888773321 0    


Q ss_pred             ----eEEEeeecC-----CCCceeEEEecCC---CCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEec
Q psy11529        137 ----WVAKHIKKP-----IKSTITCLDWHPN---NHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELN  204 (244)
Q Consensus       137 ----~~~~~~~~~-----~~~~v~~~~~~p~---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (244)
                          ........+     ...+|..+.|+|-   +..|++-..|+.|++||+....-+ +.   ...   ... ....+.
T Consensus       105 ~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~-P~---~L~---k~~-~~fg~d  176 (452)
T 3pbp_A          105 IQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEK-PI---VLN---KPN-NSFGLD  176 (452)
T ss_dssp             HHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSC-CE---EES---CCC-SEEESC
T ss_pred             cccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCC-Cc---chh---ccc-cccCCC
Confidence                001111111     2467999999995   458999999999999999541110 00   000   000 111222


Q ss_pred             CCCCCCCCeEEEEEecCCCEEEEee--CCCcEEE
Q psy11529        205 NSSSGGGWIHSVAFSKDGNKLCWTS--HDGSINV  236 (244)
Q Consensus       205 ~~~~~~~~v~~~~~s~~~~~l~~~~--~dg~i~v  236 (244)
                      ..   ...|.+++|.+++-.|...+  ..|.|+-
T Consensus       177 ~~---~~ev~S~~Fg~~~lTLYvl~~t~~GDIYA  207 (452)
T 3pbp_A          177 AR---VNDITDLEFSKDGLTLYCLNTTEGGDIFA  207 (452)
T ss_dssp             SS---CCCEEEEEECTTSSCEEEEECTTSCEEEE
T ss_pred             cc---cceEEEEEEcCCCcEEEEEecCCCCCEEE
Confidence            22   46789999999887666644  6676543

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=97.86  E-value=0.0044  Score=46.42  Aligned_cols=115  Identities=10%  Similarity=-0.007  Sum_probs=66.4

Q ss_pred             eeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCCCCCceeeEEE----eccCcceEEEEECCC---CCeEEEe---
Q psy11529         50 VLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVL----LRINRAATCVKWSPL---ENKFAAG---  119 (244)
Q Consensus        50 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~----~~~~~~v~~~~~~~~---~~~l~~~---  119 (244)
                      .+...-..-..++|.|+|..+++--..|.|++++  ..+++......+    .........|+++|+   +..|++.   
T Consensus        26 ~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~--~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~  103 (347)
T 3das_A           26 TVATGLNSPWGLAPLPGGDLLVSSRDEATITRVD--AKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTS  103 (347)
T ss_dssp             EEECCCSSEEEEEECTTSCEEEEETTTCEEEEEC--TTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEEC
T ss_pred             EeecCCCCceEEEEcCCCcEEEEEecCCEEEEEE--CCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEec
Confidence            3333345568999999998777655489999988  555553222211    123456789999996   3444443   


Q ss_pred             eCCCeEEEEEeecCC----C---ceEEE-eeecCCCCceeEEEecCCCCEEEEee
Q psy11529        120 SGARLISVCYFESEN----D---WWVAK-HIKKPIKSTITCLDWHPNNHLLGCGS  166 (244)
Q Consensus       120 ~~d~~i~i~d~~~~~----~---~~~~~-~~~~~~~~~v~~~~~~p~~~~l~~~~  166 (244)
                      ..++.|.-|.+....    .   ..... .........-..+.|.|||.++++.+
T Consensus       104 ~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~G  158 (347)
T 3das_A          104 ASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTG  158 (347)
T ss_dssp             SSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECB
T ss_pred             CCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEEC
Confidence            234556556555421    1   11111 11112223456799999998777654

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=97.85  E-value=0.0059  Score=47.70  Aligned_cols=110  Identities=11%  Similarity=0.086  Sum_probs=62.2

Q ss_pred             CCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeecc------CCCceEEEEeCCC---CCeEEEEeC----
Q psy11529          9 INPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDG------HDLKVTGIDWAPN---TNRIVTCSA----   75 (244)
Q Consensus         9 ~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~------~~~~v~~~~~~~~---~~~l~~~~~----   75 (244)
                      -.....++|.|+|+++++-...+.|++++..+  +....+..+..      .......|+|+|+   +..|+.+..    
T Consensus        26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~--g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~  103 (454)
T 1cru_A           26 LNKPHALLWGPDNQIWLTERATGKILRVNPES--GSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNP  103 (454)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTT--CCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECT
T ss_pred             CCCceEEEEcCCCcEEEEEcCCCEEEEEECCC--CcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEecccc
Confidence            34567999999999887765445788887643  32233333321      2466789999995   444443332    


Q ss_pred             ---------CccEEEEeeeCCCCCc---eeeEE-Ee-ccCcceEEEEECCCCCeEEEee
Q psy11529         76 ---------DRNAYVWTQNNDDKKW---KPTLV-LL-RINRAATCVKWSPLENKFAAGS  120 (244)
Q Consensus        76 ---------d~~i~iwd~~~~~~~~---~~~~~-~~-~~~~~v~~~~~~~~~~~l~~~~  120 (244)
                               ...|.-++++......   ...+. +. ........++|.|+|.++++.+
T Consensus       104 ~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G  162 (454)
T 1cru_A          104 KSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG  162 (454)
T ss_dssp             TC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred             CCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence                     2345555521111111   11111 11 1123478999999998766644

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=97.84  E-value=0.0042  Score=45.63  Aligned_cols=145  Identities=10%  Similarity=0.183  Sum_probs=75.4

Q ss_pred             CCeEEEecC--CCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCC----ccEEEEeeeCCCCCceee
Q psy11529         21 RQQLAFTPN--NQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSAD----RNAYVWTQNNDDKKWKPT   94 (244)
Q Consensus        21 ~~~l~~~~~--d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----~~i~iwd~~~~~~~~~~~   94 (244)
                      +.+++.|+.  ...+.+||...  +.+..+..+.........+.+  ++..++.|+.+    ..+.+||  ..++++...
T Consensus        12 ~~l~~~GG~~~~~~~~~~d~~~--~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~d--~~~~~W~~~   85 (306)
T 3ii7_A           12 DYRIALFGGSQPQSCRYFNPKD--YSWTDIRCPFEKRRDAACVFW--DNVVYILGGSQLFPIKRMDCYN--VVKDSWYSK   85 (306)
T ss_dssp             CEEEEEECCSSTTSEEEEETTT--TEEEECCCCSCCCBSCEEEEE--TTEEEEECCBSSSBCCEEEEEE--TTTTEEEEE
T ss_pred             ceEEEEeCCCCCceEEEecCCC--CCEecCCCCCcccceeEEEEE--CCEEEEEeCCCCCCcceEEEEe--CCCCeEEEC
Confidence            345666654  35788999877  656655444322222222332  46666777654    5678888  777766544


Q ss_pred             EEEeccCcceEEEEECCCCCeEEEeeCC------CeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEeeC-
Q psy11529         95 LVLLRINRAATCVKWSPLENKFAAGSGA------RLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGST-  167 (244)
Q Consensus        95 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d------~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~-  167 (244)
                      ..+.........+.+  +++.++.|+.+      ..+.+||..+.+  |...............+.+  ++++++.|+. 
T Consensus        86 ~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~--W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~  159 (306)
T 3ii7_A           86 LGPPTPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTES--WHTKPSMLTQRCSHGMVEA--NGLIYVCGGSL  159 (306)
T ss_dssp             ECCSSCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTE--EEEECCCSSCCBSCEEEEE--TTEEEEECCEE
T ss_pred             CCCCccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCc--eEeCCCCcCCcceeEEEEE--CCEEEEECCCC
Confidence            332222222223333  56677777654      347777766553  3332221111112222222  5666666653 


Q ss_pred             --------CCeEEEEEee
Q psy11529        168 --------DFKVRVFSAY  177 (244)
Q Consensus       168 --------dg~i~i~d~~  177 (244)
                              -..+.+||+.
T Consensus       160 ~~~~~~~~~~~~~~yd~~  177 (306)
T 3ii7_A          160 GNNVSGRVLNSCEVYDPA  177 (306)
T ss_dssp             SCTTTCEECCCEEEEETT
T ss_pred             CCCCcccccceEEEeCCC
Confidence                    2347788873

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=97.78  E-value=0.0034  Score=46.20  Aligned_cols=191  Identities=10%  Similarity=0.044  Sum_probs=95.4

Q ss_pred             cCCCCeEEEecC----CCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeC----C-----ccEEEEee
Q psy11529         18 NNTRQQLAFTPN----NQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSA----D-----RNAYVWTQ   84 (244)
Q Consensus        18 ~~~~~~l~~~~~----d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----d-----~~i~iwd~   84 (244)
                      .-++..++.|+.    -..+.+||...  ..+..+..+.........+..  ++..++.|+.    +     ..+.+|| 
T Consensus        22 ~~~~~i~v~GG~~~~~~~~~~~~d~~~--~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~d-   96 (308)
T 1zgk_A           22 KVGRLIYTAGGYFRQSLSYLEAYNPSN--GTWLRLADLQVPRSGLAGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYN-   96 (308)
T ss_dssp             CCCCCEEEECCBSSSBCCCEEEEETTT--TEEEECCCCSSCCBSCEEEEE--TTEEEEECCEEEETTEEEECCCEEEEE-
T ss_pred             CCCCEEEEEeCcCCCCcceEEEEcCCC--CeEeECCCCCcccccceEEEE--CCEEEEECCCcCCCCCCeecceEEEEC-
Confidence            346677888873    24688899877  555555433321111122222  4666666665    2     3577888 


Q ss_pred             eCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCC-----CeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCC
Q psy11529         85 NNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGA-----RLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNN  159 (244)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~  159 (244)
                       ..+.++.....+.........+.+  +++.++.|+.+     ..+.+||..+.+  |...............+.+  ++
T Consensus        97 -~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~r~~~~~~~~--~~  169 (308)
T 1zgk_A           97 -PMTNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDE--WHLVAPMLTRRIGVGVAVL--NR  169 (308)
T ss_dssp             -TTTTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTE--EEECCCCSSCCBSCEEEEE--TT
T ss_pred             -CCCCeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCe--EeECCCCCccccceEEEEE--CC
Confidence             677665443322222222223333  55666666543     346677765543  2222211111122222222  56


Q ss_pred             CEEEEeeCC-----CeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCC---
Q psy11529        160 HLLGCGSTD-----FKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHD---  231 (244)
Q Consensus       160 ~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---  231 (244)
                      ++++.|+.+     ..+.+||+....                ...+..+...   ......+.+  ++++++.|+.+   
T Consensus       170 ~iyv~GG~~~~~~~~~~~~yd~~~~~----------------W~~~~~~p~~---r~~~~~~~~--~~~iyv~GG~~~~~  228 (308)
T 1zgk_A          170 LLYAVGGFDGTNRLNSAECYYPERNE----------------WRMITAMNTI---RSGAGVCVL--HNCIYAAGGYDGQD  228 (308)
T ss_dssp             EEEEECCBCSSCBCCCEEEEETTTTE----------------EEECCCCSSC---CBSCEEEEE--TTEEEEECCBCSSS
T ss_pred             EEEEEeCCCCCCcCceEEEEeCCCCe----------------EeeCCCCCCc---cccceEEEE--CCEEEEEeCCCCCC
Confidence            677777654     357788873322                1111111111   222222333  67777777654   


Q ss_pred             --CcEEEEeCCC
Q psy11529        232 --GSINVRMSQQ  241 (244)
Q Consensus       232 --g~i~vwd~~~  241 (244)
                        ..+.+||+++
T Consensus       229 ~~~~v~~yd~~~  240 (308)
T 1zgk_A          229 QLNSVERYDVET  240 (308)
T ss_dssp             BCCCEEEEETTT
T ss_pred             ccceEEEEeCCC
Confidence              4588888765

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.77  E-value=0.0036  Score=47.15  Aligned_cols=106  Identities=10%  Similarity=-0.003  Sum_probs=61.0

Q ss_pred             CceEEEEeCCCCCeEEEEeCCccEEEEeeeCCCCCceeeEEEe---ccCcceEEEEECCC---CCeEEEeeC-C-----C
Q psy11529         56 LKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLL---RINRAATCVKWSPL---ENKFAAGSG-A-----R  123 (244)
Q Consensus        56 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~---~~~l~~~~~-d-----~  123 (244)
                      ..-..++|.|+|+++++ ..++.|.+++    +++........   ........++|+|+   +..|+++.. .     +
T Consensus        31 ~~P~~ia~~pdG~l~V~-e~~g~I~~i~----~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~  105 (352)
T 2ism_A           31 EVPWALAFLPDGGMLIA-ERPGRIRLFR----EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRN  105 (352)
T ss_dssp             SCEEEEEECTTSCEEEE-ETTTEEEEEE----TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEE
T ss_pred             CCceEEEEcCCCeEEEE-eCCCeEEEEE----CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCcc
Confidence            34578999999985554 5668888887    23322111111   12456889999998   555555443 2     5


Q ss_pred             eEEEEEeecCCCc--eEEEeeec---CCCCceeEEEecCCCCEEEEee
Q psy11529        124 LISVCYFESENDW--WVAKHIKK---PIKSTITCLDWHPNNHLLGCGS  166 (244)
Q Consensus       124 ~i~i~d~~~~~~~--~~~~~~~~---~~~~~v~~~~~~p~~~~l~~~~  166 (244)
                      .|..++.......  ........   ........++|.|||.++++.+
T Consensus       106 ~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G  153 (352)
T 2ism_A          106 QVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTG  153 (352)
T ss_dssp             EEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECC
T ss_pred             EEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEEC
Confidence            6777777643210  01111111   1112346899999997666643

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=97.77  E-value=0.0055  Score=44.89  Aligned_cols=189  Identities=12%  Similarity=0.133  Sum_probs=92.2

Q ss_pred             CCCeEEEecCC----CeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCC-----ccEEEEeeeCCCCC
Q psy11529         20 TRQQLAFTPNN----QEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSAD-----RNAYVWTQNNDDKK   90 (244)
Q Consensus        20 ~~~~l~~~~~d----~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~~~   90 (244)
                      ++..++.|+.+    ..+.+||...  ..+..+..+......-..+..  ++..++.|+.+     ..+.+||  ..+.+
T Consensus        15 ~~~i~v~GG~~~~~~~~~~~~d~~~--~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d--~~~~~   88 (302)
T 2xn4_A           15 PKLMVVVGGQAPKAIRSVECYDFKE--ERWHQVAELPSRRCRAGMVYM--AGLVFAVGGFNGSLRVRTVDSYD--PVKDQ   88 (302)
T ss_dssp             CEEEEEECCBSSSBCCCEEEEETTT--TEEEEECCCSSCCBSCEEEEE--TTEEEEESCBCSSSBCCCEEEEE--TTTTE
T ss_pred             CCEEEEECCCCCCCCCcEEEEcCcC--CcEeEcccCCcccccceEEEE--CCEEEEEeCcCCCccccceEEEC--CCCCc
Confidence            34567777643    4688888877  555554433322111122222  56666677644     3578888  77766


Q ss_pred             ceeeEEEeccCcceEEEEECCCCCeEEEeeCCC-----eEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEe
Q psy11529         91 WKPTLVLLRINRAATCVKWSPLENKFAAGSGAR-----LISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCG  165 (244)
Q Consensus        91 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-----~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~  165 (244)
                      +.....+.........+.+  +++.++.|+.++     .+.+||..+.  .|...............+.+  ++++++.|
T Consensus        89 W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~--~W~~~~~~p~~r~~~~~~~~--~~~iyv~G  162 (302)
T 2xn4_A           89 WTSVANMRDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSN--EWFHVAPMNTRRSSVGVGVV--GGLLYAVG  162 (302)
T ss_dssp             EEEECCCSSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTT--EEEEECCCSSCCBSCEEEEE--TTEEEEEC
T ss_pred             eeeCCCCCccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCC--eEeecCCCCCcccCceEEEE--CCEEEEEe
Confidence            5443322222222223333  556677776543     3556665544  23333222111112222222  56666666


Q ss_pred             eCC-------CeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCC-----Cc
Q psy11529        166 STD-------FKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHD-----GS  233 (244)
Q Consensus       166 ~~d-------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~  233 (244)
                      +.+       ..+.+||+....                ...+..+...   ......+.+  ++++++.|+.+     ..
T Consensus       163 G~~~~~~~~~~~~~~yd~~~~~----------------W~~~~~~p~~---r~~~~~~~~--~~~iyv~GG~~~~~~~~~  221 (302)
T 2xn4_A          163 GYDVASRQCLSTVECYNATTNE----------------WTYIAEMSTR---RSGAGVGVL--NNLLYAVGGHDGPLVRKS  221 (302)
T ss_dssp             CEETTTTEECCCEEEEETTTTE----------------EEEECCCSSC---CBSCEEEEE--TTEEEEECCBSSSSBCCC
T ss_pred             CCCCCCCccccEEEEEeCCCCc----------------EEECCCCccc---cccccEEEE--CCEEEEECCCCCCcccce
Confidence            542       347788873221                1222222211   222222222  67777777764     35


Q ss_pred             EEEEeCCC
Q psy11529        234 INVRMSQQ  241 (244)
Q Consensus       234 i~vwd~~~  241 (244)
                      +.+||+++
T Consensus       222 ~~~yd~~~  229 (302)
T 2xn4_A          222 VEVYDPTT  229 (302)
T ss_dssp             EEEEETTT
T ss_pred             EEEEeCCC
Confidence            88888765

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=97.72  E-value=0.0069  Score=44.77  Aligned_cols=148  Identities=11%  Similarity=0.065  Sum_probs=71.8

Q ss_pred             cCCCCeEEEecC----CC-------eEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCC-------ccE
Q psy11529         18 NNTRQQLAFTPN----NQ-------EVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSAD-------RNA   79 (244)
Q Consensus        18 ~~~~~~l~~~~~----d~-------~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-------~~i   79 (244)
                      ..++..++.|+.    ++       .+.+||..+  ..+..+..+.........+.+  +++.++.|+.+       ..+
T Consensus        54 ~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~--~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~  129 (318)
T 2woz_A           54 TQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVS--SEWVGLPPLPSARCLFGLGEV--DDKIYVVAGKDLQTEASLDSV  129 (318)
T ss_dssp             CSSSCEEEEESSCC-------CCCBEEEEEETTT--TEEEECSCBSSCBCSCEEEEE--TTEEEEEEEEBTTTCCEEEEE
T ss_pred             EECCEEEEECCcccCccccCCCccccEEEEeCCC--CcEEECCCCCccccccceEEE--CCEEEEEcCccCCCCcccceE
Confidence            456777888873    11       267778766  555555443322222222223  46666666653       347


Q ss_pred             EEEeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeC------CCeEEEEEeecCCCceEEEeeecCCCCceeEE
Q psy11529         80 YVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSG------ARLISVCYFESENDWWVAKHIKKPIKSTITCL  153 (244)
Q Consensus        80 ~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~  153 (244)
                      .+||  ..+.++.....++...... +++. .+++.++.|+.      -..+.+||..+.+  |...............+
T Consensus       130 ~~yd--~~~~~W~~~~~~p~~r~~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~r~~~~~~  203 (318)
T 2woz_A          130 LCYD--PVAAKWSEVKNLPIKVYGH-NVIS-HNGMIYCLGGKTDDKKCTNRVFIYNPKKGD--WKDLAPMKTPRSMFGVA  203 (318)
T ss_dssp             EEEE--TTTTEEEEECCCSSCEESC-EEEE-ETTEEEEECCEESSSCBCCCEEEEETTTTE--EEEECCCSSCCBSCEEE
T ss_pred             EEEe--CCCCCEeECCCCCCccccc-EEEE-ECCEEEEEcCCCCCCCccceEEEEcCCCCE--EEECCCCCCCcccceEE
Confidence            7788  6776654332211111111 2222 35666666653      2347777766553  33332221111122222


Q ss_pred             EecCCCCEEEEeeCCC-----eEEEEEee
Q psy11529        154 DWHPNNHLLGCGSTDF-----KVRVFSAY  177 (244)
Q Consensus       154 ~~~p~~~~l~~~~~dg-----~i~i~d~~  177 (244)
                      .+  ++++++.|+.++     .+.+||+.
T Consensus       204 ~~--~~~iyv~GG~~~~~~~~~~~~yd~~  230 (318)
T 2woz_A          204 IH--KGKIVIAGGVTEDGLSASVEAFDLK  230 (318)
T ss_dssp             EE--TTEEEEEEEEETTEEEEEEEEEETT
T ss_pred             EE--CCEEEEEcCcCCCCccceEEEEECC
Confidence            22  566777776432     46677763

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=97.72  E-value=0.0043  Score=45.65  Aligned_cols=138  Identities=9%  Similarity=-0.046  Sum_probs=74.8

Q ss_pred             EEEcCCCCeEEEecCC--------------CeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEe--CCcc
Q psy11529         15 HAWNNTRQQLAFTPNN--------------QEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCS--ADRN   78 (244)
Q Consensus        15 ~~~~~~~~~l~~~~~d--------------~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~d~~   78 (244)
                      --++++|.+|+.+...              ..|+..++++  .+   ...+..  ..  +..|++++++|+-..  .++.
T Consensus        58 ~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg--~~---~~~l~~--~~--~~~~s~~g~~Iy~~~~~~~~~  128 (302)
T 3s25_A           58 MYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNG--HG---STVLDP--DP--CIYASLIGNYIYYLHYDTQTA  128 (302)
T ss_dssp             EEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTS--CC---CEEEEC--SC--EEEEEEETTEEEEEEESSSSC
T ss_pred             eeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCC--Cc---ceEeec--CC--ccEEEEeCCEEEEEeecCCCC
Confidence            3467889988877543              3566666665  32   222221  11  236778888888765  3455


Q ss_pred             EEEEeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeC-CCeEEEEEeecCCCceEEEeeecCCCCceeEEEecC
Q psy11529         79 AYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSG-ARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHP  157 (244)
Q Consensus        79 i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p  157 (244)
                      -.||.+++.....   ..+..+..    .+++|+++.|+..+. ...|.+.+++....    .....   +... ..++|
T Consensus       129 ~~Iy~~~~dGs~~---~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~----~~l~~---~~~~-~~~~P  193 (302)
T 3s25_A          129 TSLYRIRIDGEEK---KKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSE----ALFYD---CNCY-KPVVL  193 (302)
T ss_dssp             EEEEEEETTSCCC---EEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEE----EEEEC---SCEE-EEEEE
T ss_pred             ceEEEEECCCCCe---EEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCE----EEEeC---CCcc-ceeee
Confidence            5566543554332   22222222    456778888887665 45666655554432    22222   1222 23569


Q ss_pred             CCCEEEEeeCCC--eEEEEEe
Q psy11529        158 NNHLLGCGSTDF--KVRVFSA  176 (244)
Q Consensus       158 ~~~~l~~~~~dg--~i~i~d~  176 (244)
                      ++.+|+-....+  .|..-++
T Consensus       194 ~g~~iy~t~~~~~~~I~~~~l  214 (302)
T 3s25_A          194 DDTNVYYMDVNRDNAIVHVNI  214 (302)
T ss_dssp             ETTEEEEEEGGGTTEEEEECS
T ss_pred             cCCEEEEEEcCCCcEEEEEEC
Confidence            888887765443  4444444

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.70  E-value=0.0082  Score=44.83  Aligned_cols=171  Identities=8%  Similarity=0.099  Sum_probs=98.1

Q ss_pred             eEEeCCCceEEEEEcCC----CCe--EEEe--cC--CCeEEEeeeccCCCcceeeeeecc------CC-CceEEEEe--C
Q psy11529          4 VYSFGINPVTTHAWNNT----RQQ--LAFT--PN--NQEVHLYQYEKAANDWSQLDVLDG------HD-LKVTGIDW--A   64 (244)
Q Consensus         4 ~~~~~~~~v~~~~~~~~----~~~--l~~~--~~--d~~v~v~~~~~~~~~~~~~~~~~~------~~-~~v~~~~~--~   64 (244)
                      +..+..+.++.+..-|+    |+.  ++.+  ..  +++|.+|++....+   .+..+..      .. ..+..+++  +
T Consensus        62 l~~~~~g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~---~l~~i~~~~~pv~t~~~~pyGlcly~~  138 (355)
T 3amr_A           62 LHSYNTGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNG---TLQSMTDPDHPIATAINEVYGFTLYHS  138 (355)
T ss_dssp             EEEECCSCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTC---CEEECSCTTSCEECCCSSCCCEEEEEC
T ss_pred             EEEccCCCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCC---ceeeccccccCcCCCCCCeeEEEEEec
Confidence            33444467777777663    221  3333  33  57999998853212   2333311      11 45566777  7


Q ss_pred             CC-CC-eEEEEeCCccEEEEeeeC-CCCCceee-EEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCC--CceE
Q psy11529         65 PN-TN-RIVTCSADRNAYVWTQNN-DDKKWKPT-LVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESEN--DWWV  138 (244)
Q Consensus        65 ~~-~~-~l~~~~~d~~i~iwd~~~-~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~--~~~~  138 (244)
                      |. ++ +++....+|.+..|++.. ..+..... .......+.+..|...+....|+++-++.-|..++.+...  ....
T Consensus       139 ~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~  218 (355)
T 3amr_A          139 QKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTV  218 (355)
T ss_dssp             TTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEE
T ss_pred             CCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceE
Confidence            74 44 577778899999999521 22221111 1222345688899999988899999988665454433322  1011


Q ss_pred             EEee-ecCCCCceeEEEe--cCCCC-EEEEee-CCCeEEEEEee
Q psy11529        139 AKHI-KKPIKSTITCLDW--HPNNH-LLGCGS-TDFKVRVFSAY  177 (244)
Q Consensus       139 ~~~~-~~~~~~~v~~~~~--~p~~~-~l~~~~-~dg~i~i~d~~  177 (244)
                      .... .......+..+++  .++++ +|++++ .+.+..+||..
T Consensus       219 v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~  262 (355)
T 3amr_A          219 IDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ  262 (355)
T ss_dssp             EEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred             EEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence            1111 1222346888888  45555 666666 56799999984

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=97.68  E-value=0.0086  Score=49.51  Aligned_cols=152  Identities=11%  Similarity=0.070  Sum_probs=82.9

Q ss_pred             CCCCeEEEecCC----CeEEEeeeccCCCcceeee-e-----eccCCCceEEEEeCCCCCeEEEEeCC------ccEEEE
Q psy11529         19 NTRQQLAFTPNN----QEVHLYQYEKAANDWSQLD-V-----LDGHDLKVTGIDWAPNTNRIVTCSAD------RNAYVW   82 (244)
Q Consensus        19 ~~~~~l~~~~~d----~~v~v~~~~~~~~~~~~~~-~-----~~~~~~~v~~~~~~~~~~~l~~~~~d------~~i~iw   82 (244)
                      .++..++.|+.+    ..+.+||...  +.|..+. .     .......-..+.+..+++.++.|+.+      ..+.+|
T Consensus       396 ~~~~iyv~GG~~~~~~~~v~~yd~~~--~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~y  473 (695)
T 2zwa_A          396 AGNDVFYMGGSNPYRVNEILQLSIHY--DKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIF  473 (695)
T ss_dssp             CSSCEEEECCBSSSBCCCEEEEEECS--SCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEE
T ss_pred             ECCEEEEECCCCCCCcCcEEEEECCC--CeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEE
Confidence            456777788743    4688899877  6666554 2     11111122333333267777777653      347788


Q ss_pred             eeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCC--eEEEEEeecCCCceEEEee---ecCCCCceeEEEecC
Q psy11529         83 TQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGAR--LISVCYFESENDWWVAKHI---KKPIKSTITCLDWHP  157 (244)
Q Consensus        83 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~--~i~i~d~~~~~~~~~~~~~---~~~~~~~v~~~~~~p  157 (244)
                      |  ..+.++.....+.. ...-.+++...+++.++.|+.++  .+.+||..+..  |.....   ..........+.+..
T Consensus       474 d--~~t~~W~~~~~~p~-~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~--W~~~~~~g~~p~~r~~~~a~v~~~  548 (695)
T 2zwa_A          474 D--MKTREWSMIKSLSH-TRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEI--FKDVTPKDEFFQNSLVSAGLEFDP  548 (695)
T ss_dssp             E--TTTTEEEECCCCSB-CCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTE--EEECCCSSGGGGSCCBSCEEEEET
T ss_pred             e--CCCCcEEECCCCCC-CcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCc--eEEccCCCCCCCcccceeEEEEeC
Confidence            8  67766544322221 12222333334777888877654  57777766543  333322   111122334456665


Q ss_pred             C-CCEEEEeeC--C-----CeEEEEEee
Q psy11529        158 N-NHLLGCGST--D-----FKVRVFSAY  177 (244)
Q Consensus       158 ~-~~~l~~~~~--d-----g~i~i~d~~  177 (244)
                      + +++++.|+.  +     ..+.+||+.
T Consensus       549 ~~~~iyv~GG~~~~~~~~~~~v~~yd~~  576 (695)
T 2zwa_A          549 VSKQGIILGGGFMDQTTVSDKAIIFKYD  576 (695)
T ss_dssp             TTTEEEEECCBCTTSSCBCCEEEEEEEC
T ss_pred             CCCEEEEECCcCCCCCeeeCcEEEEEcc
Confidence            5 667777765  2     358888884

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=97.66  E-value=0.016  Score=47.21  Aligned_cols=185  Identities=13%  Similarity=0.084  Sum_probs=112.0

Q ss_pred             eEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEE-eCCccEEEEeeeCCCCCceeeEEEeccC
Q psy11529         23 QLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTC-SADRNAYVWTQNNDDKKWKPTLVLLRIN  101 (244)
Q Consensus        23 ~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~  101 (244)
                      +|+.+ ..+.|+..++++  ........+.+ -..+..++|++.+..|+.+ ..++.|..++  +...... .. .....
T Consensus         8 ~Ll~s-~~~~I~~i~l~~--~~~~~~~~~~~-~~~~~~l~~d~~~~~lywtD~~~~~I~r~~--~~g~~~~-~v-~~~g~   79 (628)
T 4a0p_A            8 FLLFS-RRADIRRISLET--NNNNVAIPLTG-VKEASALDFDVTDNRIYWTDISLKTISRAF--MNGSALE-HV-VEFGL   79 (628)
T ss_dssp             EEEEE-ETTEEEEEESSC--TTCEEECCCCS-CSCEEEEEEETTTTEEEEEETTTTEEEEEE--TTSCSCE-EE-ECSSC
T ss_pred             EEEEE-eCCcEEEEECCC--CCcceEEEcCC-CCceEEEEEECCCCEEEEEECCCCeEEEEE--CCCCCcE-EE-EeCCC
Confidence            55555 457899999976  32222222322 3457899999966666544 4578888888  5543322 22 22223


Q ss_pred             cceEEEEECCCCCeEEEe-eCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEeeC--CCeEEEEEeee
Q psy11529        102 RAATCVKWSPLENKFAAG-SGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGST--DFKVRVFSAYI  178 (244)
Q Consensus       102 ~~v~~~~~~~~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~--dg~i~i~d~~~  178 (244)
                      .....+++.+.+..|+.+ ...+.|.+.+++....    .......-.....++++|....|+....  .+.|...++. 
T Consensus        80 ~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~----~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~d-  154 (628)
T 4a0p_A           80 DYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHR----QVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMD-  154 (628)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTC----EEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETT-
T ss_pred             CCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcE----EEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCC-
Confidence            457788998765555544 4467888888776543    1222233356789999996555555442  4567777652 


Q ss_pred             cccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEee-CCCcEEEEeCCC
Q psy11529        179 KDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTS-HDGSINVRMSQQ  241 (244)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~vwd~~~  241 (244)
                                        +.....+...   ......++++++++.|+.+. ..+.|...|+..
T Consensus       155 ------------------G~~~~~l~~~---~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG  197 (628)
T 4a0p_A          155 ------------------GSERTTLVPN---VGRANGLTIDYAKRRLYWTDLDTNLIESSNMLG  197 (628)
T ss_dssp             ------------------SCSCEEEECS---CSSEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             ------------------CCceEEEECC---CCCcceEEEccccCEEEEEECCCCEEEEEcCCC
Confidence                              2222222222   56778999999877666664 456788887753

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=97.65  E-value=0.009  Score=45.03  Aligned_cols=105  Identities=16%  Similarity=0.021  Sum_probs=57.2

Q ss_pred             CceEEEEEcCCCC-eEEEecCCCeEEEeeeccCCCcceeeeee----ccCCCceEEEEeCCC---CCeEEEE-eC-----
Q psy11529         10 NPVTTHAWNNTRQ-QLAFTPNNQEVHLYQYEKAANDWSQLDVL----DGHDLKVTGIDWAPN---TNRIVTC-SA-----   75 (244)
Q Consensus        10 ~~v~~~~~~~~~~-~l~~~~~d~~v~v~~~~~~~~~~~~~~~~----~~~~~~v~~~~~~~~---~~~l~~~-~~-----   75 (244)
                      .....++|.|+|+ ++++ ...|.|++++..+  .....+..+    .........++|+|+   +..|+.+ +.     
T Consensus        18 ~~P~~i~~~pdG~~l~V~-e~~G~i~~~~~~g--~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g   94 (353)
T 2g8s_A           18 DHPWALAFLPDNHGMLIT-LRGGELRHWQAGK--GLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDG   94 (353)
T ss_dssp             SSEEEEEECSTTCCEEEE-ETTTEEEEEETTT--EECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSS
T ss_pred             CCcEEEEEcCCCCEEEEE-eCCceEEEEeCCC--ceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCC
Confidence            4567899999999 5554 5678999887543  100111111    122456789999995   4444443 22     


Q ss_pred             --CccEEEEeeeCCCC--CceeeE-EEec------cCcceEEEEECCCCCeEEEe
Q psy11529         76 --DRNAYVWTQNNDDK--KWKPTL-VLLR------INRAATCVKWSPLENKFAAG  119 (244)
Q Consensus        76 --d~~i~iwd~~~~~~--~~~~~~-~~~~------~~~~v~~~~~~~~~~~l~~~  119 (244)
                        ...|..++  ....  ...... .+..      .......++|.|+|.++++.
T Consensus        95 ~~~~~v~r~~--~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~  147 (353)
T 2g8s_A           95 KAGTAVGYGR--LSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIAL  147 (353)
T ss_dssp             CEEEEEEEEE--ECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEE
T ss_pred             CceeEEEEEE--ECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEE
Confidence              23566666  3322  111111 1111      11224679999999655554

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=97.57  E-value=0.007  Score=45.63  Aligned_cols=107  Identities=7%  Similarity=-0.020  Sum_probs=58.3

Q ss_pred             ceEEEEeCCCCCeEEEEeCCccEEEEeeeCCCCCcee-eEE----EeccCcceEEEEECCC---CCeEEEeeC-------
Q psy11529         57 KVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKWKP-TLV----LLRINRAATCVKWSPL---ENKFAAGSG-------  121 (244)
Q Consensus        57 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-~~~----~~~~~~~v~~~~~~~~---~~~l~~~~~-------  121 (244)
                      ....++|.|+|++|+.+...+.|++++  .. +.... ...    ..........++++|+   +..|+++..       
T Consensus        19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~--~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~   95 (353)
T 2g8s_A           19 HPWALAFLPDNHGMLITLRGGELRHWQ--AG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGK   95 (353)
T ss_dssp             SEEEEEECSTTCCEEEEETTTEEEEEE--TT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSC
T ss_pred             CcEEEEEcCCCCEEEEEeCCceEEEEe--CC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCC
Confidence            457899999998444555678999888  43 32110 000    0112345689999996   455554432       


Q ss_pred             -CCeEEEEEeecCCC-ceEEEeee--cC----CCCceeEEEecCCCCEEEEee
Q psy11529        122 -ARLISVCYFESEND-WWVAKHIK--KP----IKSTITCLDWHPNNHLLGCGS  166 (244)
Q Consensus       122 -d~~i~i~d~~~~~~-~~~~~~~~--~~----~~~~v~~~~~~p~~~~l~~~~  166 (244)
                       ...|..+++..... ........  .+    .......+.|.|||.++++.+
T Consensus        96 ~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G  148 (353)
T 2g8s_A           96 AGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALG  148 (353)
T ss_dssp             EEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEEC
T ss_pred             ceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEEC
Confidence             23566666654321 11111111  11    112346799999996555543

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=97.55  E-value=0.0097  Score=43.77  Aligned_cols=134  Identities=9%  Similarity=0.082  Sum_probs=70.5

Q ss_pred             cCCCCeEEEec--CCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCC--------------ccEEE
Q psy11529         18 NNTRQQLAFTP--NNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSAD--------------RNAYV   81 (244)
Q Consensus        18 ~~~~~~l~~~~--~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--------------~~i~i   81 (244)
                      +.++..|....  .++.|...+.++  .   ....+..  ..  +--+++++.+|+.+...              ..|+.
T Consensus        22 ~~~g~~iy~~n~~d~~~ly~~~~dg--~---~~~~l~~--~~--~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~   92 (302)
T 3s25_A           22 CESDGEVFFSNTNDNGRLYAMNIDG--S---NIHKLSN--DT--AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCR   92 (302)
T ss_dssp             EEETTEEEEEEGGGTTEEEEEETTS--C---SCEEEEE--EE--EEEEEECSSEEEEEEECC------CCSSCCSEEEEE
T ss_pred             EEeCCEEEEEeCCCCceEEEEcCCC--C---CCEEccC--Cc--eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEE
Confidence            45667666653  245566666555  3   2223321  11  23457888888876543              34555


Q ss_pred             EeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEee--CCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCC
Q psy11529         82 WTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGS--GARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNN  159 (244)
Q Consensus        82 wd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~  159 (244)
                      .+  +...+...   +...  .  ...|+++++.|+...  .++.-.||.++.....  ...... +  .+  ..++|++
T Consensus        93 i~--~dg~~~~~---l~~~--~--~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~--~~~lt~-~--~~--~~~~~~g  156 (302)
T 3s25_A           93 IK--RNGHGSTV---LDPD--P--CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEE--KKKIKN-H--YL--FTCNTSD  156 (302)
T ss_dssp             EE--TTSCCCEE---EECS--C--EEEEEEETTEEEEEEESSSSCEEEEEEETTSCC--CEEEES-S--CC--CCSEEET
T ss_pred             Ee--CCCCcceE---eecC--C--ccEEEEeCCEEEEEeecCCCCceEEEEECCCCC--eEEEeC-C--Cc--eEeeEEC
Confidence            55  55554221   2111  1  236777888988876  3444455555443220  112222 1  11  4567888


Q ss_pred             CEEEEeeC-CCeEEEEEe
Q psy11529        160 HLLGCGST-DFKVRVFSA  176 (244)
Q Consensus       160 ~~l~~~~~-dg~i~i~d~  176 (244)
                      +.|+-.+. ...|.+.++
T Consensus       157 ~~iy~t~~g~~~Iy~~~l  174 (302)
T 3s25_A          157 RYFYYNNPKNGQLYRYDT  174 (302)
T ss_dssp             TEEEEECTTTCCEEEEET
T ss_pred             CEEEEEeCCCceEEEEEC
Confidence            88876654 456766665

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=97.55  E-value=0.0091  Score=41.43  Aligned_cols=109  Identities=12%  Similarity=0.035  Sum_probs=62.2

Q ss_pred             CceEEEEeCCCCCeEEEEeCCccEEEEeeeCCCCCc---ee-eEEE-eccCcceEEEEECCCCCeEEEeeCCCeEEEEEe
Q psy11529         56 LKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKW---KP-TLVL-LRINRAATCVKWSPLENKFAAGSGARLISVCYF  130 (244)
Q Consensus        56 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~---~~-~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~  130 (244)
                      ..+..++|+|+|.+.+.  .+|.+.-.+  ..+...   .. ...+ ...-....++.|.|+|.+.++  .||.|.-++-
T Consensus        41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~--~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~p  114 (236)
T 1tl2_A           41 SNFKFLFLSPGGELYGV--LNDKIYKGT--PPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASP  114 (236)
T ss_dssp             TTCSEEEECTTSCEEEE--ETTEEEEES--CCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESC
T ss_pred             ccceeEEECCCccEEEE--eCCeEEEEC--CCCCCcccccccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCC
Confidence            36779999999886665  677655555  433211   00 1111 111122578999999988877  4587766553


Q ss_pred             ecCCC-ceEE--EeeecCCCCceeEEEecCCCCEEEEeeCCCeEE
Q psy11529        131 ESEND-WWVA--KHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVR  172 (244)
Q Consensus       131 ~~~~~-~~~~--~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~i~  172 (244)
                      .+... .|.-  ...-...=..+..+.+.|+|.+.++.  |+.++
T Consensus       115 P~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~ly  157 (236)
T 1tl2_A          115 PQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFY  157 (236)
T ss_dssp             CCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEE
T ss_pred             CcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEE
Confidence            22211 1100  11111111467999999999877776  77743

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=97.44  E-value=0.034  Score=45.32  Aligned_cols=155  Identities=8%  Similarity=0.009  Sum_probs=93.2

Q ss_pred             CceEEEEEcCCCCeEEEe-cCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEE-EEeCCccEEEEeeeCC
Q psy11529         10 NPVTTHAWNNTRQQLAFT-PNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIV-TCSADRNAYVWTQNND   87 (244)
Q Consensus        10 ~~v~~~~~~~~~~~l~~~-~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~iwd~~~~   87 (244)
                      ..+.+++|.+.+..|..+ ...+.|+.+++++  ..  ....+...-.....+++...+..|+ +-+..+.|.+.+  +.
T Consensus       349 ~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g--~~--~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~--~~  422 (619)
T 3s94_A          349 RHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDG--SG--SQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTR--LN  422 (619)
T ss_dssp             SSEEEEEEETTTTEEEEEETTTTEEEEEETTS--CS--CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEE--TT
T ss_pred             CccEEEEEEcCCCeEEEEeCCCCeEEEEEcCC--Cc--cEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEe--CC
Confidence            346788898855554444 4567888888876  21  1222222234567888887555444 444578899988  54


Q ss_pred             CCCceeeEEEeccCcceEEEEECCCCCeEEEeeC--CCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEe
Q psy11529         88 DKKWKPTLVLLRINRAATCVKWSPLENKFAAGSG--ARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCG  165 (244)
Q Consensus        88 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~  165 (244)
                      ... ...+ ....-.....+++.|....|+.+..  ...|...+++....    .......-...+.+++++++..|+.+
T Consensus       423 G~~-~~~l-~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~----~~l~~~~l~~P~GlalD~~~~~LY~a  496 (619)
T 3s94_A          423 GTM-RKIL-ISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDR----VVLVNTSLGWPNGLALDYDEGKIYWG  496 (619)
T ss_dssp             SCS-CEEE-ECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC----EEEECSSCSCEEEEEEETTTTEEEEE
T ss_pred             CCe-EEEE-EECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCcc----EEEEeCCCCCCeeeEEcccCCEEEEE
Confidence            432 2222 2234467889999997555555543  35566555554433    12222233577899999977666665


Q ss_pred             e-CCCeEEEEEe
Q psy11529        166 S-TDFKVRVFSA  176 (244)
Q Consensus       166 ~-~dg~i~i~d~  176 (244)
                      . ..+.|..+++
T Consensus       497 D~~~~~I~~~~~  508 (619)
T 3s94_A          497 DAKTDKIEVMNT  508 (619)
T ss_dssp             ETTTTEEEEEES
T ss_pred             ECCCCEEEEEec
Confidence            4 4567888887

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=97.41  E-value=0.02  Score=42.17  Aligned_cols=185  Identities=11%  Similarity=0.012  Sum_probs=89.9

Q ss_pred             eEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeC-----C------ccEEEEeeeCCCCCc
Q psy11529         23 QLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSA-----D------RNAYVWTQNNDDKKW   91 (244)
Q Consensus        23 ~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----d------~~i~iwd~~~~~~~~   91 (244)
                      +++.|+  ..+.+||..+  +.+.. ..+..............++..++.|+.     .      ..+..||  ..++++
T Consensus         7 l~~~GG--~~~~~yd~~~--~~W~~-~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d--~~~~~W   79 (315)
T 4asc_A            7 IFMISE--EGAVAYDPAA--NECYC-ASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFD--HLDSEW   79 (315)
T ss_dssp             EEEEET--TEEEEEETTT--TEEEE-EECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEE--TTTTEE
T ss_pred             EEEEcC--CceEEECCCC--CeEec-CCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEec--CCCCeE
Confidence            455565  5799999987  65654 333322222223333446777777773     1      1266777  777665


Q ss_pred             eeeEEEeccCcceEEEEECCCCCeEEEeeCC--------CeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEE
Q psy11529         92 KPTLVLLRINRAATCVKWSPLENKFAAGSGA--------RLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLG  163 (244)
Q Consensus        92 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--------~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~  163 (244)
                      .....++........+.+  +++.++.|+.+        ..+.+||..+.+  |............. +++. -++++++
T Consensus        80 ~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~--W~~~~~~p~~r~~~-~~~~-~~~~iyv  153 (315)
T 4asc_A           80 LGMPPLPSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFK--WGESDPLPYVVYGH-TVLS-HMDLVYV  153 (315)
T ss_dssp             EECCCBSSCEESCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTE--EEECCCCSSCCBSC-EEEE-ETTEEEE
T ss_pred             EECCCCCcchhceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCc--EeECCCCCCcccce-eEEE-ECCEEEE
Confidence            433222111111122223  45666666632        346777766542  33222211111122 2222 3566777


Q ss_pred             EeeC-C-----CeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCC-----
Q psy11529        164 CGST-D-----FKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDG-----  232 (244)
Q Consensus       164 ~~~~-d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-----  232 (244)
                      .|+. +     ..+.+||+.+..                .+.+..+...   ......+.+  ++++++.|+.++     
T Consensus       154 ~GG~~~~~~~~~~~~~yd~~~~~----------------W~~~~~~p~~---r~~~~~~~~--~~~iyv~GG~~~~~~~~  212 (315)
T 4asc_A          154 IGGKGSDRKCLNKMCVYDPKKFE----------------WKELAPMQTA---RSLFGATVH--DGRIIVAAGVTDTGLTS  212 (315)
T ss_dssp             ECCBCTTSCBCCCEEEEETTTTE----------------EEECCCCSSC---CBSCEEEEE--TTEEEEEEEECSSSEEE
T ss_pred             EeCCCCCCcccceEEEEeCCCCe----------------EEECCCCCCc---hhceEEEEE--CCEEEEEeccCCCCccc
Confidence            7765 2     357888874321                1122212111   222222222  677777777654     


Q ss_pred             cEEEEeCCC
Q psy11529        233 SINVRMSQQ  241 (244)
Q Consensus       233 ~i~vwd~~~  241 (244)
                      .+.+||+++
T Consensus       213 ~~~~yd~~~  221 (315)
T 4asc_A          213 SAEVYSITD  221 (315)
T ss_dssp             EEEEEETTT
T ss_pred             eEEEEECCC
Confidence            477888765

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=97.33  E-value=0.014  Score=48.21  Aligned_cols=154  Identities=12%  Similarity=0.239  Sum_probs=83.3

Q ss_pred             CCCeEEEecCC------CeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCc--cEEEEeeeCCCCCc
Q psy11529         20 TRQQLAFTPNN------QEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADR--NAYVWTQNNDDKKW   91 (244)
Q Consensus        20 ~~~~l~~~~~d------~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~--~i~iwd~~~~~~~~   91 (244)
                      +++.++.|+.+      +.+.+||..+  ..|..+..+......-.++.+ .+++.++.|+.++  .+.+||  ..+..+
T Consensus       451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t--~~W~~~~~~p~~R~~h~~~~~-~~~~iyv~GG~~~~~~v~~yd--~~t~~W  525 (695)
T 2zwa_A          451 NNQLLLIGGRKAPHQGLSDNWIFDMKT--REWSMIKSLSHTRFRHSACSL-PDGNVLILGGVTEGPAMLLYN--VTEEIF  525 (695)
T ss_dssp             TTEEEEECCBSSTTCBCCCCEEEETTT--TEEEECCCCSBCCBSCEEEEC-TTSCEEEECCBCSSCSEEEEE--TTTTEE
T ss_pred             CCEEEEEcCCCCCCCccccEEEEeCCC--CcEEECCCCCCCcccceEEEE-cCCEEEEECCCCCCCCEEEEE--CCCCce
Confidence            67777777643      3578888877  666665444322222222322 3677778877644  688888  777765


Q ss_pred             eeeEE---EeccCcceEEEEECCC-CCeEEEeeC--C-----CeEEEEEeecCCC----ceEEEeeecCCCCceeEEEec
Q psy11529         92 KPTLV---LLRINRAATCVKWSPL-ENKFAAGSG--A-----RLISVCYFESEND----WWVAKHIKKPIKSTITCLDWH  156 (244)
Q Consensus        92 ~~~~~---~~~~~~~v~~~~~~~~-~~~l~~~~~--d-----~~i~i~d~~~~~~----~~~~~~~~~~~~~~v~~~~~~  156 (244)
                      .....   ..........+.+..+ ++.++.|+.  +     ..+.+||+.+..-    .|............-.+++..
T Consensus       526 ~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~  605 (695)
T 2zwa_A          526 KDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYI  605 (695)
T ss_dssp             EECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEE
T ss_pred             EEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEe
Confidence            43322   1111222333555555 666777765  2     4588888887751    022222111111111233333


Q ss_pred             CCCCEEEEeeCC--------CeEEEEEeee
Q psy11529        157 PNNHLLGCGSTD--------FKVRVFSAYI  178 (244)
Q Consensus       157 p~~~~l~~~~~d--------g~i~i~d~~~  178 (244)
                      .++++++.|+.+        ..+.+||+.+
T Consensus       606 ~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t  635 (695)
T 2zwa_A          606 TPRKLLIVGGTSPSGLFDRTNSIISLDPLS  635 (695)
T ss_dssp             ETTEEEEECCBCSSCCCCTTTSEEEEETTT
T ss_pred             CCCEEEEECCccCCCCCCCCCeEEEEECCC
Confidence            346777777743        4588898743

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=97.31  E-value=0.075  Score=46.62  Aligned_cols=193  Identities=7%  Similarity=0.036  Sum_probs=112.5

Q ss_pred             CCeEEEec----------CCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCCCCC
Q psy11529         21 RQQLAFTP----------NNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKK   90 (244)
Q Consensus        21 ~~~l~~~~----------~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~   90 (244)
                      ..+|++|+          ..|.|.+|++.+  ++++.+.... .+++|++++-- +| +|++|- ..++++|+  +...+
T Consensus       844 ~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~--~kL~lv~~~~-v~g~v~al~~~-~g-~Lla~i-g~~l~vy~--l~~~~  915 (1158)
T 3ei3_A          844 NTYFIVGTAMVYPEEAEPKQGRIVVFQYSD--GKLQTVAEKE-VKGAVYSMVEF-NG-KLLASI-NSTVRLYE--WTTEK  915 (1158)
T ss_dssp             CCEEEEEEEECCTTCSSCCCEEEEEEEEET--TEEEEEEEEE-ESSCEEEEEEE-TT-EEEEEE-TTEEEEEE--ECTTS
T ss_pred             CEEEEEEeeecCCCCCCCCceEEEEEEEEC--CEEEEEEEEE-cCCcCEEEeee-CC-EEEEEc-CCEEEEEE--CCCCc
Confidence            46788775          358899999975  5445554444 57888888633 35 444443 47899999  44443


Q ss_pred             ceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEeeCCCe
Q psy11529         91 WKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFK  170 (244)
Q Consensus        91 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~  170 (244)
                      ... ....... .+..+.....++++++|..-..+.++.++.... .....-......+++++.+-.++ .++.+..+|.
T Consensus       916 ~L~-~~~~~~~-~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~-~L~~~a~D~~~~~vta~~~ld~~-t~l~aD~~gN  991 (1158)
T 3ei3_A          916 ELR-TECNHYN-NIMALYLKTKGDFILVGDLMRSVLLLAYKPMEG-NFEEIARDFNPNWMSAVEILDDD-NFLGAENAFN  991 (1158)
T ss_dssp             CEE-EEEEECC-CSCEEEEEEETTEEEEEESSBCEEEEEEETTTT-EEEEEEECCSCBCEEEEEEEETT-EEEEEETTSE
T ss_pred             eEE-EEeeccc-cEEEEEEeccCCEEEEEEhhheEEEEEEEcCCC-eEEEEEeecccccEEEEEEEccC-cEEEEcCCCc
Confidence            221 1111121 122223323577999999888888887776543 12222234455788898887655 6777889999


Q ss_pred             EEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEE---ecC---------CCEEEEeeCCCcEEEE
Q psy11529        171 VRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAF---SKD---------GNKLCWTSHDGSINVR  237 (244)
Q Consensus       171 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~---s~~---------~~~l~~~~~dg~i~vw  237 (244)
                      +.+..........      .  ..........+..    +..|+++.-   .+.         ...++.++.+|.|.+.
T Consensus       992 l~vl~~~~~~~~~------~--~~~~L~~~~~fhl----G~~vt~~~~~sl~~~~~~~~~~~~~~~il~~T~~GsIg~l 1058 (1158)
T 3ei3_A          992 LFVCQKDSAATTD------E--ERQHLQEVGLFHL----GEFVNVFCHGSLVMQNLGETSTPTQGSVLFGTVNGMIGLV 1058 (1158)
T ss_dssp             EEEEEECTTCCST------T--GGGBEEEEEEEEC----SSCEEEEEECCSCCC-------CEEEEEEEEETTSCEEEE
T ss_pred             EEEEecCCCCCCc------c--ccceeeeEEEEeC----CCcEeeEEeeeeecCCCccccccccceEEEEecCCEEEEE
Confidence            9998874321110      0  0011222333433    455666652   222         2357778889988764

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=97.23  E-value=0.037  Score=41.47  Aligned_cols=152  Identities=10%  Similarity=0.087  Sum_probs=82.6

Q ss_pred             CCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeee----ccCCCceEEEEeCCC---CCeEEEE---eCCcc
Q psy11529          9 INPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVL----DGHDLKVTGIDWAPN---TNRIVTC---SADRN   78 (244)
Q Consensus         9 ~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~----~~~~~~v~~~~~~~~---~~~l~~~---~~d~~   78 (244)
                      -..-..++|.|||+++++--..|.|++++..+  +....+..+    .........++++|+   ...|+..   ..++.
T Consensus        31 L~~P~~ia~~pdG~llVter~~G~I~~v~~~~--g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~  108 (347)
T 3das_A           31 LNSPWGLAPLPGGDLLVSSRDEATITRVDAKT--GRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNR  108 (347)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTT--CCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEE
T ss_pred             CCCceEEEEcCCCcEEEEEecCCEEEEEECCC--CcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCE
Confidence            45678999999999887765589999887654  322223222    223567899999995   3344332   23455


Q ss_pred             EEEEeeeCCCC-----C---ceeeEE-Ee-ccCcceEEEEECCCCCeEEEeeCCC-----------eEEEEEeecCCCc-
Q psy11529         79 AYVWTQNNDDK-----K---WKPTLV-LL-RINRAATCVKWSPLENKFAAGSGAR-----------LISVCYFESENDW-  136 (244)
Q Consensus        79 i~iwd~~~~~~-----~---~~~~~~-~~-~~~~~v~~~~~~~~~~~l~~~~~d~-----------~i~i~d~~~~~~~-  136 (244)
                      |.-|.  ...+     .   ....+. +. ........+.|.|+|.++++.+..+           .=+||.++..... 
T Consensus       109 v~R~~--~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip  186 (347)
T 3das_A          109 IVRML--YDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPA  186 (347)
T ss_dssp             EEEEE--BCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBC
T ss_pred             EEEEE--eCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCcc
Confidence            65565  4331     1   111111 11 1122456799999998766644211           1123333322210 


Q ss_pred             -----eEEEeeecCCCCceeEEEecCCCCEEEEe
Q psy11529        137 -----WVAKHIKKPIKSTITCLDWHPNNHLLGCG  165 (244)
Q Consensus       137 -----~~~~~~~~~~~~~v~~~~~~p~~~~l~~~  165 (244)
                           ........++ .....++|+|+|.+.++-
T Consensus       187 ~~nPf~~~~i~a~G~-RNp~Gla~dp~G~L~~~d  219 (347)
T 3das_A          187 PGNPFPGSPVYSYGH-RNVQGLAWDDKQRLFASE  219 (347)
T ss_dssp             TTCSSTTCCEEEBCC-SBCCEEEECTTCCEEEEE
T ss_pred             CCCCCCCCeEEeeCC-CCcceEEECCCCCEEEEe
Confidence                 0001122233 356789999988766553

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=97.16  E-value=0.041  Score=40.56  Aligned_cols=143  Identities=8%  Similarity=-0.032  Sum_probs=67.7

Q ss_pred             CeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeC----Cc-------cEEEEeeeCCCCC
Q psy11529         22 QQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSA----DR-------NAYVWTQNNDDKK   90 (244)
Q Consensus        22 ~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----d~-------~i~iwd~~~~~~~   90 (244)
                      ..++.|+.  .+..||...  +.+.. .................++..++.|+.    ++       .+..||  ..+.+
T Consensus        17 ~i~~~GG~--~~~~yd~~~--~~W~~-~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d--~~~~~   89 (318)
T 2woz_A           17 LILLVNDT--AAVAYDPME--NECYL-TALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLD--NVSSE   89 (318)
T ss_dssp             EEEEECSS--EEEEEETTT--TEEEE-EEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEE--TTTTE
T ss_pred             hhhhcccc--ceEEECCCC--Cceec-ccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEe--CCCCc
Confidence            34555653  488899877  55554 222211122222233446777777773    11       166777  67766


Q ss_pred             ceeeEEEeccCcceEEEEECCCCCeEEEeeCC-------CeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEE
Q psy11529         91 WKPTLVLLRINRAATCVKWSPLENKFAAGSGA-------RLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLG  163 (244)
Q Consensus        91 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-------~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~  163 (244)
                      +.....+.........+.+  +++.++.|+.+       ..+.+||..+.  .|............. +++. .++++++
T Consensus        90 W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r~~~-~~~~-~~~~iyv  163 (318)
T 2woz_A           90 WVGLPPLPSARCLFGLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAA--KWSEVKNLPIKVYGH-NVIS-HNGMIYC  163 (318)
T ss_dssp             EEECSCBSSCBCSCEEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTT--EEEEECCCSSCEESC-EEEE-ETTEEEE
T ss_pred             EEECCCCCccccccceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCC--CEeECCCCCCccccc-EEEE-ECCEEEE
Confidence            5433222211122222233  45666776653       23555555443  233322111111111 2222 3566777


Q ss_pred             EeeC------CCeEEEEEee
Q psy11529        164 CGST------DFKVRVFSAY  177 (244)
Q Consensus       164 ~~~~------dg~i~i~d~~  177 (244)
                      .|+.      -..+.+||+.
T Consensus       164 ~GG~~~~~~~~~~~~~yd~~  183 (318)
T 2woz_A          164 LGGKTDDKKCTNRVFIYNPK  183 (318)
T ss_dssp             ECCEESSSCBCCCEEEEETT
T ss_pred             EcCCCCCCCccceEEEEcCC
Confidence            7653      1358888873

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=97.14  E-value=0.03  Score=42.03  Aligned_cols=98  Identities=9%  Similarity=0.072  Sum_probs=50.8

Q ss_pred             CCCeEEEecC-CCeEEEeeeccCCCcceeeeeec-cCCCceEEEEeCCCCCeEEEEeC-C---------ccEEEEeeeCC
Q psy11529         20 TRQQLAFTPN-NQEVHLYQYEKAANDWSQLDVLD-GHDLKVTGIDWAPNTNRIVTCSA-D---------RNAYVWTQNND   87 (244)
Q Consensus        20 ~~~~l~~~~~-d~~v~v~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~-d---------~~i~iwd~~~~   87 (244)
                      +++.++.|+. ...+.+||.......|..+..+. ........+.+  +++.++.|+. +         ..+.+||  ..
T Consensus        19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~~yd--~~   94 (357)
T 2uvk_A           19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKYN--PK   94 (357)
T ss_dssp             TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE--TTEEEEECCEEECTTSCEEECCCEEEEE--TT
T ss_pred             CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE--CCEEEEEcCCCCCCCccceeeccEEEEe--CC
Confidence            6677777764 35788888863224555554444 11122222233  4666666665 2         4578888  77


Q ss_pred             CCCceeeEEEeccCcceEEEEECCCCCeEEEeeCC
Q psy11529         88 DKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGA  122 (244)
Q Consensus        88 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  122 (244)
                      +.++.....+......-.++.. .+++.++.|+.+
T Consensus        95 ~~~W~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~  128 (357)
T 2uvk_A           95 TNSWVKLMSHAPMGMAGHVTFV-HNGKAYVTGGVN  128 (357)
T ss_dssp             TTEEEECSCCCSSCCSSEEEEE-ETTEEEEEECCC
T ss_pred             CCcEEECCCCCCcccccceEEE-ECCEEEEEeCcC
Confidence            7765443322211111122222 456777777754

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=96.81  E-value=0.12  Score=40.02  Aligned_cols=200  Identities=11%  Similarity=0.107  Sum_probs=120.5

Q ss_pred             CceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccC----CCceEEEEeCCCCCeEEEEe-------CCcc
Q psy11529         10 NPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGH----DLKVTGIDWAPNTNRIVTCS-------ADRN   78 (244)
Q Consensus        10 ~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~-------~d~~   78 (244)
                      ++|.--.|-.+ +.|+..+ +..|+-|++++..   .+...+..|    ...|..-..+++.++++..+       -.|.
T Consensus       106 e~VvfWkWis~-~~l~lVT-~taVyHWsi~~~s---~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~  180 (494)
T 1bpo_A          106 DDVTFWKWISL-NTVALVT-DNAVYHWSMEGES---QPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGA  180 (494)
T ss_dssp             SCCCEEEEEET-TEEEEEC-SSEEEEEESSSSC---CCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEE
T ss_pred             CCceEEEecCC-CeEEEEc-CCeeEEecccCCC---CchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccce
Confidence            34444555443 3444443 4689999997522   455555544    35677777889999876443       2478


Q ss_pred             EEEEeeeCCCCCceeeEEEeccCcceEEEEECCC---CCeEEEeeC---CCeEEEEEeecC---CCce--EEEeeecC--
Q psy11529         79 AYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPL---ENKFAAGSG---ARLISVCYFESE---NDWW--VAKHIKKP--  145 (244)
Q Consensus        79 i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~---d~~i~i~d~~~~---~~~~--~~~~~~~~--  145 (244)
                      +.+|.  .+.+.   ...+.+|......+....+   ...+..+..   .+.++|.++...   ...+  .......+  
T Consensus       181 mQLYS--~er~~---sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe  255 (494)
T 1bpo_A          181 MQLYS--VDRKV---SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPE  255 (494)
T ss_dssp             EEEEE--STTCC---EEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTT
T ss_pred             EEEee--ccccc---cchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcc
Confidence            89999  55554   3444566555544444322   123444443   278888888543   1100  11111111  


Q ss_pred             -CCCceeEEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCE
Q psy11529        146 -IKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNK  224 (244)
Q Consensus       146 -~~~~v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~  224 (244)
                       ..+-..++..++.-..++.-+.-|.|++||+                  .++.++..-+-.   ..+|..-+-+....-
T Consensus       256 ~~~DFPvamqvs~kygviyviTK~G~i~lyDl------------------eTgt~i~~nrIs---~~~iF~t~~~~~~~G  314 (494)
T 1bpo_A          256 AQNDFPVAMQISEKHDVVFLITKYGYIHLYDL------------------ETGTCIYMNRIS---GETIFVTAPHEATAG  314 (494)
T ss_dssp             STTCCEEEEEEETTTTEEEEEETTSEEEEEET------------------TTCCEEEEEECC---SSCEEEEEEETTTTE
T ss_pred             cccCceeEEEecccCCEEEEEecCceEEEEec------------------ccceeeeeeccc---CCceEEecccCCCCc
Confidence             1344567888888778888899999999999                  778888776655   666666555555455


Q ss_pred             EEEeeCCCcEEEEeCC
Q psy11529        225 LCWTSHDGSINVRMSQ  240 (244)
Q Consensus       225 l~~~~~dg~i~vwd~~  240 (244)
                      ++.....|.|.--.++
T Consensus       315 i~~Vnr~GqVl~v~v~  330 (494)
T 1bpo_A          315 IIGVNRKGQVLSVCVE  330 (494)
T ss_dssp             EEEEETTCEEEEEEEC
T ss_pred             EEEEccCceEEEEEEc
Confidence            5555577776555443

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=96.64  E-value=0.16  Score=39.32  Aligned_cols=204  Identities=9%  Similarity=0.109  Sum_probs=120.6

Q ss_pred             EEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCCCCCcee
Q psy11529         14 THAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKWKP   93 (244)
Q Consensus        14 ~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~   93 (244)
                      +.-.+|..+.||.-. ..+++|||++.  .  ..+.... ....|.--.|-. .+.|+..+ +..|+-|+  +... ..+
T Consensus        70 sAIMnP~~~iiALra-g~~lQiFnle~--K--~klks~~-~~e~VvfWkWis-~~~l~lVT-~taVyHWs--i~~~-s~P  138 (494)
T 1bpo_A           70 SAIMNPASKVIALKA-GKTLQIFNIEM--K--SKMKAHT-MTDDVTFWKWIS-LNTVALVT-DNAVYHWS--MEGE-SQP  138 (494)
T ss_dssp             EEEECSSSSCEEEEE-TTEEEEEETTT--T--EEEEEEE-CSSCCCEEEEEE-TTEEEEEC-SSEEEEEE--SSSS-CCC
T ss_pred             eeeeCCCCcEEEEec-CCeEEEEchHH--h--hhhccee-cCCCceEEEecC-CCeEEEEc-CCeeEEec--ccCC-CCc
Confidence            345678777777765 68999999987  4  4555544 345666677754 33455554 56899999  4432 223


Q ss_pred             eEEEecc----CcceEEEEECCCCCeEEEeeC-------CCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCC---C
Q psy11529         94 TLVLLRI----NRAATCVKWSPLENKFAAGSG-------ARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPN---N  159 (244)
Q Consensus        94 ~~~~~~~----~~~v~~~~~~~~~~~l~~~~~-------d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~---~  159 (244)
                      ...+..|    ...|..-..+++.++++..+-       .|.+.+|..+...     ....++|.+....+...-+   .
T Consensus       139 ~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~-----sQ~ieGhaa~F~~~~~~g~~~~~  213 (494)
T 1bpo_A          139 VKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-----SQPIEGHAASFAQFKMEGNAEES  213 (494)
T ss_dssp             EEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCC-----EEEECCSEEEEEEEECTTCSSEE
T ss_pred             hhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccc-----cchheeeeeeeEEEecCCCCCCc
Confidence            3333333    356777778899998775442       4678888777664     4666676544444433321   1


Q ss_pred             CEEEEeeCC---CeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEE
Q psy11529        160 HLLGCGSTD---FKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINV  236 (244)
Q Consensus       160 ~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v  236 (244)
                      ++++.+...   ++++|.++......    ...     -..+.+..+-.......-.-++..|+.-..++.-+.-|.|++
T Consensus       214 ~lf~fa~r~~~g~kLhi~Ei~~~~~~----~~~-----f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~l  284 (494)
T 1bpo_A          214 TLFCFAVRGQAGGKLHIIEVGTPPTG----NQP-----FPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHL  284 (494)
T ss_dssp             EEEEEEECSTTCCEEEEEECSCCCTT----CCC-----CCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEE
T ss_pred             eEEEEEEecCCCcEEEEEEcCCCccC----CCC-----ccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEE
Confidence            244444432   68999888321000    000     011111111111111334568888988888888889999999


Q ss_pred             EeCCCC
Q psy11529        237 RMSQQV  242 (244)
Q Consensus       237 wd~~~~  242 (244)
                      ||+++.
T Consensus       285 yDleTg  290 (494)
T 1bpo_A          285 YDLETG  290 (494)
T ss_dssp             EETTTC
T ss_pred             Eecccc
Confidence            999875

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=96.24  E-value=0.54  Score=42.14  Aligned_cols=203  Identities=8%  Similarity=0.099  Sum_probs=111.6

Q ss_pred             EEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCCCCCceee
Q psy11529         15 HAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKWKPT   94 (244)
Q Consensus        15 ~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~   94 (244)
                      .-.+|..+.+|.-. ..+++|||++.  .  ..+.... ....|.--.|-.+. .|+..+ +..|.-|+  +... ..+.
T Consensus        71 AIMnP~~~iiALra-g~~lQiFnl~~--k--~klks~~-~~e~VvfWkWis~~-~l~lVT-~~aVyHW~--~~~~-s~P~  139 (1630)
T 1xi4_A           71 AIMNPASKVIALKA-GKTLQIFNIEM--K--SKMKAHT-MTDDVTFWKWISLN-TVALVT-DNAVYHWS--MEGE-SQPV  139 (1630)
T ss_pred             hccCCCcceEEEec-CCeEEEeehHH--h--hhhcccc-cCCCceEEEecCCC-eeEEEc-CCeEEEec--cCCC-CccH
Confidence            34667777777654 68999999977  3  3343433 34567777776433 444443 56899999  4432 1222


Q ss_pred             EEEecc----CcceEEEEECCCCCeEEEee-------CCCeEEEEEeecCCCceEEEeeecCCCCceeEEEec--C-CCC
Q psy11529         95 LVLLRI----NRAATCVKWSPLENKFAAGS-------GARLISVCYFESENDWWVAKHIKKPIKSTITCLDWH--P-NNH  160 (244)
Q Consensus        95 ~~~~~~----~~~v~~~~~~~~~~~l~~~~-------~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--p-~~~  160 (244)
                      ..+..|    ...|..-..+++.++++..+       -.|.+.+|..+....     ....+|.+....+...  + ..+
T Consensus       140 k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~s-----Q~iegha~~F~~~~~~~~~~~~~  214 (1630)
T 1xi4_A          140 KMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS-----QPIEGHAASFAQFKMEGNAEEST  214 (1630)
T ss_pred             HHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccc-----hhhhHhHhhhheeccCCCCCCce
Confidence            111222    45677777788888876543       247788888776643     4445554433333322  1 122


Q ss_pred             EEEEeeC---CCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEE
Q psy11529        161 LLGCGST---DFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVR  237 (244)
Q Consensus       161 ~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw  237 (244)
                      +++.+..   .+.++|.++.......    ..     -..+.+..+-.+.....-..++..|+.-..+..-+.-|.|.++
T Consensus       215 l~~f~~~~~~g~kLhi~Ei~~~~~~~----~~-----f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~  285 (1630)
T 1xi4_A          215 LFCFAVRGQAGGKLHIIEVGTPPTGN----QP-----FPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLY  285 (1630)
T ss_pred             EEEEEEecCCCceEEEEecCCCccCC----CC-----CccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEE
Confidence            3333222   2688888873220000    00     0011111111100002334577888877778888889999999


Q ss_pred             eCCCC
Q psy11529        238 MSQQV  242 (244)
Q Consensus       238 d~~~~  242 (244)
                      |+++.
T Consensus       286 d~~t~  290 (1630)
T 1xi4_A          286 DLETG  290 (1630)
T ss_pred             ecccc
Confidence            99875

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=96.14  E-value=0.7  Score=41.45  Aligned_cols=159  Identities=9%  Similarity=0.091  Sum_probs=88.8

Q ss_pred             CCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccC----CCceEEEEeCCCCCeEEEEe-------CCc
Q psy11529          9 INPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGH----DLKVTGIDWAPNTNRIVTCS-------ADR   77 (244)
Q Consensus         9 ~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~-------~d~   77 (244)
                      ..+|.--.|-.+.. |+..+ +..|+-|++.+..   .+...+..|    ...|..-..+++.++++..+       -.|
T Consensus       105 ~e~VvfWkWis~~~-l~lVT-~~aVyHW~~~~~s---~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G  179 (1630)
T 1xi4_A          105 TDDVTFWKWISLNT-VALVT-DNAVYHWSMEGES---QPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVG  179 (1630)
T ss_pred             CCCceEEEecCCCe-eEEEc-CCeEEEeccCCCC---ccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccc
Confidence            34566666755443 44333 4679999996522   455555544    45677777788888876443       357


Q ss_pred             cEEEEeeeCCCCCceeeEEEeccCcceEEEEEC--CC-CCeEEEeeC---CCeEEEEEeecC---CCceE--EEeeecC-
Q psy11529         78 NAYVWTQNNDDKKWKPTLVLLRINRAATCVKWS--PL-ENKFAAGSG---ARLISVCYFESE---NDWWV--AKHIKKP-  145 (244)
Q Consensus        78 ~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~-~~~l~~~~~---d~~i~i~d~~~~---~~~~~--~~~~~~~-  145 (244)
                      .+.+|.  .+.+.   ...+.+|......+...  +. ...+..+..   .+.++|.++...   .+.+.  ......+ 
T Consensus       180 ~mQLyS--~er~~---sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~  254 (1630)
T 1xi4_A          180 AMQLYS--VDRKV---SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPP  254 (1630)
T ss_pred             eeeeee--ccccc---chhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCc
Confidence            889998  44443   22234444433333332  11 122222222   267888777543   11000  0111111 


Q ss_pred             --CCCceeEEEecCCCCEEEEeeCCCeEEEEEee
Q psy11529        146 --IKSTITCLDWHPNNHLLGCGSTDFKVRVFSAY  177 (244)
Q Consensus       146 --~~~~v~~~~~~p~~~~l~~~~~dg~i~i~d~~  177 (244)
                        ...-..++..++.-..+..-+.-|.|++||+.
T Consensus       255 ~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~  288 (1630)
T 1xi4_A          255 EAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLE  288 (1630)
T ss_pred             ccccCcceEEEeccccCEEEEEecCceEEEEecc
Confidence              12344567778777788888899999999994

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=96.02  E-value=0.24  Score=39.57  Aligned_cols=77  Identities=9%  Similarity=-0.079  Sum_probs=53.2

Q ss_pred             CcceEEEEECCCCCeEEEeeC-CCeEEEEEeecCCCc--------eEEEeeecCCCCceeEEEecCCCCEEEEeeCCCeE
Q psy11529        101 NRAATCVKWSPLENKFAAGSG-ARLISVCYFESENDW--------WVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKV  171 (244)
Q Consensus       101 ~~~v~~~~~~~~~~~l~~~~~-d~~i~i~d~~~~~~~--------~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~i  171 (244)
                      ......+..+|||+++++++. +.++.++|++.-...        ...........-.....+|.++|+-..+-.-|..|
T Consensus       322 pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G~aYTtlfidSqv  401 (638)
T 3sbq_A          322 PKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRGNAYTTLFIDSQV  401 (638)
T ss_dssp             SSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEE
T ss_pred             CCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCCceEeeeeecceE
Confidence            455677899999999888765 889999998752110        00011111223467789999999655666689999


Q ss_pred             EEEEee
Q psy11529        172 RVFSAY  177 (244)
Q Consensus       172 ~i~d~~  177 (244)
                      .-|++.
T Consensus       402 vkWni~  407 (638)
T 3sbq_A          402 VKWNME  407 (638)
T ss_dssp             EEEEHH
T ss_pred             EEEecc
Confidence            999984

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=95.67  E-value=0.4  Score=37.55  Aligned_cols=109  Identities=10%  Similarity=0.052  Sum_probs=59.8

Q ss_pred             CceEEEEEcCCCC-eEEEecCCCeEEEeeeccCCCcceeeeeec---------cCCCceEEEEeCCC----CCeEEEEeC
Q psy11529         10 NPVTTHAWNNTRQ-QLAFTPNNQEVHLYQYEKAANDWSQLDVLD---------GHDLKVTGIDWAPN----TNRIVTCSA   75 (244)
Q Consensus        10 ~~v~~~~~~~~~~-~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~---------~~~~~v~~~~~~~~----~~~l~~~~~   75 (244)
                      ..-..|+|.|||+ .|+++...|.|++++..+.. ....+..+.         ..+.....|+|+|+    +.+.++-+.
T Consensus        14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~-~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~   92 (463)
T 2wg3_C           14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEI-FKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTT   92 (463)
T ss_dssp             SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCB-CSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEE
T ss_pred             CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCe-eeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeC
Confidence            4556899999996 45555678999999754310 001122211         12457889999996    443333222


Q ss_pred             --C----------ccEEEEeeeCCCC--------CceeeEEEe--ccCcceEEEEECCCCCeEEEeeC
Q psy11529         76 --D----------RNAYVWTQNNDDK--------KWKPTLVLL--RINRAATCVKWSPLENKFAAGSG  121 (244)
Q Consensus        76 --d----------~~i~iwd~~~~~~--------~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~  121 (244)
                        +          ..|.-|.  +..+        .....+...  ........|+|.|||.++++.+.
T Consensus        93 ~~~~~~~~~~~~~~~v~r~~--~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd  158 (463)
T 2wg3_C           93 NQERWAIGPHDHILRVVEYT--VSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGD  158 (463)
T ss_dssp             CCCSSCSSSSCEEEEEEEEE--BCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECC
T ss_pred             CCCCcccCCcccceEEEEEE--EcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCC
Confidence              1          1344455  3321        111222222  22344678999999987666554

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=95.55  E-value=0.64  Score=36.41  Aligned_cols=110  Identities=11%  Similarity=0.044  Sum_probs=59.5

Q ss_pred             ceEEEEeCCCCC-eEEEEeCCccEEEEeeeCCCCC-ceeeEEEe---------ccCcceEEEEECCC----CCeEEEeeC
Q psy11529         57 KVTGIDWAPNTN-RIVTCSADRNAYVWTQNNDDKK-WKPTLVLL---------RINRAATCVKWSPL----ENKFAAGSG  121 (244)
Q Consensus        57 ~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~-~~~~~~~~---------~~~~~v~~~~~~~~----~~~l~~~~~  121 (244)
                      .-..|+|.|+|. .|+.+...|.|++++  ..... ......+.         ........|+|+|+    +.+.++-+.
T Consensus        15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~--~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~   92 (463)
T 2wg3_C           15 QPVGALHSGDGSQRLFILEKEGYVKILT--PEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTT   92 (463)
T ss_dssp             SEEEEECCSSSSCCEEEEETTTEEEEEC--TTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEE
T ss_pred             CceEEEECCCCCeEEEEEeCCceEEEEe--CCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeC
Confidence            457899999986 566667889999997  43221 11112111         11356788999997    333332221


Q ss_pred             --C----------CeEEEEEeecC--C-----CceEEEeee-cCCCCceeEEEecCCCCEEEEeeCC
Q psy11529        122 --A----------RLISVCYFESE--N-----DWWVAKHIK-KPIKSTITCLDWHPNNHLLGCGSTD  168 (244)
Q Consensus       122 --d----------~~i~i~d~~~~--~-----~~~~~~~~~-~~~~~~v~~~~~~p~~~~l~~~~~d  168 (244)
                        +          ..|.-|.+...  .     ....+.... ......-..|.|.|||.+.++.++.
T Consensus        93 ~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~  159 (463)
T 2wg3_C           93 NQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDG  159 (463)
T ss_dssp             CCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCT
T ss_pred             CCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCC
Confidence              1          13444555421  1     011111111 1223456789999999876665543

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=95.25  E-value=1.5  Score=38.76  Aligned_cols=104  Identities=10%  Similarity=0.026  Sum_probs=65.3

Q ss_pred             CeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCC------CCeEEEEeC-CccEEEEeeeCCCCCceee
Q psy11529         22 QQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPN------TNRIVTCSA-DRNAYVWTQNNDDKKWKPT   94 (244)
Q Consensus        22 ~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~------~~~l~~~~~-d~~i~iwd~~~~~~~~~~~   94 (244)
                      .+++.++ ++.+.++.++.  +++....... -...|.|+++.|.      +.+++.|.. |++++|++  +.+-+....
T Consensus       524 ~~vvva~-g~~l~~fel~~--~~L~~~~~~~-l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~s--L~~l~~~~~  597 (1158)
T 3ei3_A          524 SQVVVAV-GRALYYLQIHP--QELRQISHTE-MEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILK--LPSFELLHK  597 (1158)
T ss_dssp             SEEEEEE-TTEEEEEEEET--TEEEEEEEEE-CSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEE--TTTCCEEEE
T ss_pred             CEEEEEE-CCEEEEEEeeC--CceeeecccC-CCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEE--CCCCCeEEE
Confidence            3555554 57788888865  3333333333 4668999999863      368888886 99999999  665543332


Q ss_pred             EEEeccCcceEEEEEC--CCCCeEEEeeCCCeEEEEEeec
Q psy11529         95 LVLLRINRAATCVKWS--PLENKFAAGSGARLISVCYFES  132 (244)
Q Consensus        95 ~~~~~~~~~v~~~~~~--~~~~~l~~~~~d~~i~i~d~~~  132 (244)
                      ..+ .......++.+.  ....+|.+|-.||.+.-+.++.
T Consensus       598 ~~L-~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~  636 (1158)
T 3ei3_A          598 EML-GGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNI  636 (1158)
T ss_dssp             EEC-CSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEECT
T ss_pred             EEC-CCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcC
Confidence            222 112233333332  2345788899999988777764

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=94.92  E-value=1.2  Score=35.84  Aligned_cols=85  Identities=8%  Similarity=-0.115  Sum_probs=53.8

Q ss_pred             CceeEEEecCCCCEEEEeeC-CCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEE
Q psy11529        148 STITCLDWHPNNHLLGCGST-DFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLC  226 (244)
Q Consensus       148 ~~v~~~~~~p~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  226 (244)
                      .....+..+|||++++.++. +.++.++|++..........  .   ........+...    .......+|.++|....
T Consensus       323 ksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~--~---~~~~~~~ae~e~----GlGPlHt~Fd~~G~aYT  393 (638)
T 3sbq_A          323 KNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKL--A---DPRDVIVGEPEL----GLGPLHTTFDGRGNAYT  393 (638)
T ss_dssp             SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCC--S---CGGGGEEECCBC----CSCEEEEEECSSSEEEE
T ss_pred             CCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccc--c---CcccceEeeccC----CCcccEEEECCCCceEe
Confidence            34567899999998887664 77999999853211100000  0   011222333333    56678899999995555


Q ss_pred             EeeCCCcEEEEeCCC
Q psy11529        227 WTSHDGSINVRMSQQ  241 (244)
Q Consensus       227 ~~~~dg~i~vwd~~~  241 (244)
                      +---|..|.-|++..
T Consensus       394 tlfidSqvvkWni~~  408 (638)
T 3sbq_A          394 TLFIDSQVVKWNMEE  408 (638)
T ss_dssp             EETTTTEEEEEEHHH
T ss_pred             eeeecceEEEEeccH
Confidence            555899999999864

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=94.66  E-value=0.18  Score=37.67  Aligned_cols=117  Identities=5%  Similarity=-0.097  Sum_probs=62.7

Q ss_pred             CeEEEEeCCccEEEEeeeCCCCCceeeEEEeccCcceEEEEE--CC-CCCeEEEe-eCCCeEEEEEeecCCCceEEEeee
Q psy11529         68 NRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKW--SP-LENKFAAG-SGARLISVCYFESENDWWVAKHIK  143 (244)
Q Consensus        68 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~--~~-~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~  143 (244)
                      ..++.++.||.|.-.|  ..+|+........ ...++....-  .+ ++..++.. +.||.+..++.+++...+......
T Consensus        11 ~~V~v~t~dG~l~Ald--~~tG~~~W~~~~~-~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~   87 (339)
T 2be1_A           11 DILIAADVEGGLHAVD--RRNGHIIWSIEPE-NFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQ   87 (339)
T ss_dssp             EEEEEEETTSCEEEEE--TTTTEEEEEECGG-GSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHH
T ss_pred             CEEEEEeCCCeEEEEE--CCCCcEEEEecCC-ccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccc
Confidence            3677888899999999  7888755544321 1112211110  01 22333333 579999888876663321111100


Q ss_pred             cCCCCceeE---EEe-c----CCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecC
Q psy11529        144 KPIKSTITC---LDW-H----PNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNN  205 (244)
Q Consensus       144 ~~~~~~v~~---~~~-~----p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (244)
                      .-...++..   ... .    ..+..+++|+.+|++.-.|+                  .+++.+.++..
T Consensus        88 lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~------------------~tG~~~W~~~~  139 (339)
T 2be1_A           88 LVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINM------------------LNGEIISAFGP  139 (339)
T ss_dssp             HHTTCSEEEECC----------CCEEEEECEEEEEEEEEET------------------TTCCEEEEEST
T ss_pred             ceeccccccCCCceeecccccccCCEEEEEecCCEEEEEEC------------------CCCcEEEEEec
Confidence            001111111   000 0    03457889999999999998                  66777766654

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=94.57  E-value=0.93  Score=33.86  Aligned_cols=28  Identities=11%  Similarity=0.076  Sum_probs=22.2

Q ss_pred             CCCeEEEEeCCccEEEEeeeCCCCCceeeE
Q psy11529         66 NTNRIVTCSADRNAYVWTQNNDDKKWKPTL   95 (244)
Q Consensus        66 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~   95 (244)
                      .+..+++++.++++...|  ..+|+.+..+
T Consensus       110 ~~g~Vy~Gs~~g~l~ald--~~tG~~~W~~  137 (339)
T 2be1_A          110 EDEKVYTGSMRTIMYTIN--MLNGEIISAF  137 (339)
T ss_dssp             CCEEEEECEEEEEEEEEE--TTTCCEEEEE
T ss_pred             cCCEEEEEecCCEEEEEE--CCCCcEEEEE
Confidence            355788899999999999  8899865544

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=93.81  E-value=1.7  Score=33.09  Aligned_cols=216  Identities=10%  Similarity=-0.002  Sum_probs=116.7

Q ss_pred             eEEEEE-cCCCCeEEEecC--C---CeEEEeeeccCC----Ccceeeeeecc-----CCCceEEEEeCCCCCeEEE--Ee
Q psy11529         12 VTTHAW-NNTRQQLAFTPN--N---QEVHLYQYEKAA----NDWSQLDVLDG-----HDLKVTGIDWAPNTNRIVT--CS   74 (244)
Q Consensus        12 v~~~~~-~~~~~~l~~~~~--d---~~v~v~~~~~~~----~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~--~~   74 (244)
                      ...++. +.+++.|++--.  +   -++...+.....    .....+..+..     +--.|..+...+++++-+.  |-
T Consensus        28 P~gv~vd~~~gRiFvt~PR~~~gvp~TL~~v~~~~~~~~~~~~p~ll~PYP~w~~~~~lvsV~~v~iD~~~rLWVLDtG~  107 (381)
T 3q6k_A           28 STAFAYDAEGEKLFLAVPRKLPRVPYTLAEVDTKNSLGVKGKHSPLLNKFSGHKTGKELTSIYQPVIDDCRRLWVVDIGS  107 (381)
T ss_dssp             CCEEEEETTTTEEEEECCTTSTTCSCSEEEEEHHHHTTCTTCSSCCBEECTTCSSSCSSSCEEEEEECTTCEEEEEECSS
T ss_pred             eeeeeeecCCCcEEEEeCCCCCCCCcEEEEEeCCCCcccccCCcccccCCCCCccccceEEeeEEEEcCCCcEEEEeCCC
Confidence            456777 678888877633  2   244444432100    00011133322     2235777788877664332  21


Q ss_pred             -------------CCccEEEEeeeCCCC--CceeeEEEecc----CcceEEEEEC---CC----CCeEEEee-CCCeEEE
Q psy11529         75 -------------ADRNAYVWTQNNDDK--KWKPTLVLLRI----NRAATCVKWS---PL----ENKFAAGS-GARLISV  127 (244)
Q Consensus        75 -------------~d~~i~iwd~~~~~~--~~~~~~~~~~~----~~~v~~~~~~---~~----~~~l~~~~-~d~~i~i  127 (244)
                                   .-.+|.+||  +.++  +......+...    .+.+..+++.   |.    +.+++.+. ....|.|
T Consensus       108 ~~~~~~~~~~~~~~~pkLv~~D--L~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIV  185 (381)
T 3q6k_A          108 VEYRSRGAKDYPSHRPAIVAYD--LKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFI  185 (381)
T ss_dssp             CSSCSTTGGGSCCCCCEEEEEE--SSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEE
T ss_pred             cCcCCCccccCCCCCceEEEEE--CCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEE
Confidence                         123678899  7887  76666665432    3457778877   32    23333333 3677999


Q ss_pred             EEeecCCCceEEEeeecCC--------------CCceeEEEecCC----CCEEEEeeCCCeEEEEEeeecccccCCCCCC
Q psy11529        128 CYFESENDWWVAKHIKKPI--------------KSTITCLDWHPN----NHLLGCGSTDFKVRVFSAYIKDIESAPQSTN  189 (244)
Q Consensus       128 ~d~~~~~~~~~~~~~~~~~--------------~~~v~~~~~~p~----~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  189 (244)
                      +|+.+++..........+.              ...+..++++|+    ++.|+.....+. ++|.+.+..+.....   
T Consensus       186 ydl~~~~swRv~~~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~-~ly~V~T~~L~~~~~---  261 (381)
T 3q6k_A          186 YDHKKQDSWNVTHPTFKAERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAI-KVYSVNTKELKQKGG---  261 (381)
T ss_dssp             EETTTTEEEEEECGGGSCCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCS-EEEEEEHHHHSSTTC---
T ss_pred             EECCCCcEEEEccCCCccccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCC-cEEEEEHHHhhCcch---
Confidence            9998886533321111111              247888999998    677777665552 566665444332211   


Q ss_pred             CCccccccceeEEecCCCCCCCCeEEEEEe-cCCCEEEEeeCCCcEEEEeCCC
Q psy11529        190 WGSKSTLGNCLVELNNSSSGGGWIHSVAFS-KDGNKLCWTSHDGSINVRMSQQ  241 (244)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~~dg~i~vwd~~~  241 (244)
                          ...-+.+..- +.   ...-..++.. .+|.++++--....|..|+.++
T Consensus       262 ----~~~v~~~G~k-g~---~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~  306 (381)
T 3q6k_A          262 ----KLNPELLGNR-GK---YNDAIALAYDPKTKVIFFAEANTKQVSCWNTQK  306 (381)
T ss_dssp             ----CCCCEEEEEC-CT---TCCEEEEEECTTTCEEEEEESSSSEEEEEETTS
T ss_pred             ----hhceEEeeec-CC---CCCcceEEEeCCCCeEEEEeccCCeEEEEeCCC
Confidence                0111112111 11   1233456665 5677677767788899998764

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=92.41  E-value=2.8  Score=31.82  Aligned_cols=156  Identities=9%  Similarity=0.108  Sum_probs=76.0

Q ss_pred             CCceEEEEEcC--CCCeEEEecCCC--eEEEeeeccCCCcceeeee---ecc--------CCCceEEEEeCC-C-CCeEE
Q psy11529          9 INPVTTHAWNN--TRQQLAFTPNNQ--EVHLYQYEKAANDWSQLDV---LDG--------HDLKVTGIDWAP-N-TNRIV   71 (244)
Q Consensus         9 ~~~v~~~~~~~--~~~~l~~~~~d~--~v~v~~~~~~~~~~~~~~~---~~~--------~~~~v~~~~~~~-~-~~~l~   71 (244)
                      ...|.+|++.|  ++.+++.+ ..+  .-.||...+.+..++.+..   +..        ....|.++++.| + ...+.
T Consensus        54 ~~~v~~i~~dp~~~~~l~~g~-~~g~~g~gl~~s~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~  132 (394)
T 3b7f_A           54 GHTIHHIVQDPREPERMLMAA-RTGHLGPTVFRSDDGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWY  132 (394)
T ss_dssp             TSEEEEEEECSSSTTCEEEEE-EC--CCEEEEEESSTTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEE
T ss_pred             CCceEEEEECCCCCCeEEEEe-cCCCCCccEEEeCCCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEE
Confidence            56799999998  45555444 333  1123333332234444322   111        113578899987 3 45566


Q ss_pred             EEeCCccEEEEeeeCCCCCceeeEEEe----------------ccCcceEEEEECCC-CCeEEEeeCCCeEEEEEeecCC
Q psy11529         72 TCSADRNAYVWTQNNDDKKWKPTLVLL----------------RINRAATCVKWSPL-ENKFAAGSGARLISVCYFESEN  134 (244)
Q Consensus        72 ~~~~d~~i~iwd~~~~~~~~~~~~~~~----------------~~~~~v~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~  134 (244)
                      .++..+.|...+  -....+.......                .....+.+|.++|. ...++.+..++.+  |....+.
T Consensus       133 ~g~~~ggl~~S~--DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~ggl--~~s~DgG  208 (394)
T 3b7f_A          133 AGTSPQGLFRST--DHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSSGGV--FESTDAG  208 (394)
T ss_dssp             EEEETTEEEEES--STTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEETBEE--EEESSTT
T ss_pred             EEecCCcEEEEc--CCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECCCCE--EEECCCC
Confidence            665556555444  2222322211000                01235788999884 4555655544443  3333333


Q ss_pred             CceEEEeee-c----C-----CCCceeEEEecCC-CCEEEEeeCCC
Q psy11529        135 DWWVAKHIK-K----P-----IKSTITCLDWHPN-NHLLGCGSTDF  169 (244)
Q Consensus       135 ~~~~~~~~~-~----~-----~~~~v~~~~~~p~-~~~l~~~~~dg  169 (244)
                      ..+...... .    +     ....+.++.++|+ ...|..+...+
T Consensus       209 ~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g  254 (394)
T 3b7f_A          209 TDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG  254 (394)
T ss_dssp             SSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE
T ss_pred             CCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe
Confidence            323222110 0    0     0134788999986 35666666544

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=92.25  E-value=2.9  Score=31.71  Aligned_cols=144  Identities=10%  Similarity=0.104  Sum_probs=68.7

Q ss_pred             eEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCC-CCCeEEEEeCCc----cEEEEeeeCCCCCceeeEE-
Q psy11529         23 QLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAP-NTNRIVTCSADR----NAYVWTQNNDDKKWKPTLV-   96 (244)
Q Consensus        23 ~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~----~i~iwd~~~~~~~~~~~~~-   96 (244)
                      .|.+|+..| +.+++....+..+...... .....|.+|++.| +...+..++..+    .|...+  -....+..... 
T Consensus        24 ~l~vgt~~G-l~~~~~~~~g~~W~~~~~~-~~~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~--D~G~tW~~~~~~   99 (394)
T 3b7f_A           24 MLLVATIKG-AWFLASDPARRTWELRGPV-FLGHTIHHIVQDPREPERMLMAARTGHLGPTVFRSD--DGGGNWTEATRP   99 (394)
T ss_dssp             EEEEEETTE-EEEEEECTTSCSEEEEEEE-STTSEEEEEEECSSSTTCEEEEEEC--CCEEEEEES--STTSCCEECSBC
T ss_pred             EEEEEecCc-eEEEECCCCCCCceECCcc-CCCCceEEEEECCCCCCeEEEEecCCCCCccEEEeC--CCCCCceECCcc
Confidence            566677666 5555543211234443211 2346799999998 334444454444    344333  12222222111 


Q ss_pred             --Eec--------cCcceEEEEECCC--CCeEEEeeCCCeEEEEEeecCCCceEEEeee----------------cCCCC
Q psy11529         97 --LLR--------INRAATCVKWSPL--ENKFAAGSGARLISVCYFESENDWWVAKHIK----------------KPIKS  148 (244)
Q Consensus        97 --~~~--------~~~~v~~~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~----------------~~~~~  148 (244)
                        +..        ....|.++++.|.  ...+.+++..+.|  |....+...|......                .....
T Consensus       100 ~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl--~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~  177 (394)
T 3b7f_A          100 PAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGL--FRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGP  177 (394)
T ss_dssp             CCCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEE--EEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCC
T ss_pred             ccCCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcE--EEEcCCCCCeEECcCccCCccccccccccccCCCCCC
Confidence              000        1125778899872  4556666555544  3344433323322111                01124


Q ss_pred             ceeEEEecCC-CCEEEEeeCCCeEE
Q psy11529        149 TITCLDWHPN-NHLLGCGSTDFKVR  172 (244)
Q Consensus       149 ~v~~~~~~p~-~~~l~~~~~dg~i~  172 (244)
                      .+.++.++|. ...|..+..++.|.
T Consensus       178 ~i~~i~~d~~~~~~l~vg~~~ggl~  202 (394)
T 3b7f_A          178 KMHSILVDPRDPKHLYIGMSSGGVF  202 (394)
T ss_dssp             EEEEEEECTTCTTCEEEEEETBEEE
T ss_pred             ceeEEEECCCCCCEEEEEECCCCEE
Confidence            5788999983 34455555445443

>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*

Probab=91.90  E-value=5.2  Score=33.79  Aligned_cols=113  Identities=16%  Similarity=0.196  Sum_probs=58.6

Q ss_pred             CCceEEEEeCCC-CCeEEEEeCCccEEEEeeeCCCCCceeeEEEec----cCcceEEEEECCC-CCeEEEeeCCCe----
Q psy11529         55 DLKVTGIDWAPN-TNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLR----INRAATCVKWSPL-ENKFAAGSGARL----  124 (244)
Q Consensus        55 ~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~-~~~l~~~~~d~~----  124 (244)
                      .+.|.+|+++|. ...++.++..+.|...+  -....+........    ....+.+++++|. ...++++..+..    
T Consensus        14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~--DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~   91 (789)
T 1sqj_A           14 GGYITGIVAHPKTKDLLYARTDIGGAYRWD--AGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEW   91 (789)
T ss_dssp             CSCEEEEEECSSSTTCEEEEESSSCEEEEE--TTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSC
T ss_pred             CCcEEEEEECCCCCCEEEEEecCCCEEEec--CCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCcc
Confidence            468999999994 45666777777766655  22223332211000    1246899999985 344544443211    


Q ss_pred             EEEEEeecCCCceEEEeeecC------CCCceeEEEecCCC-CEEEEeeCCC
Q psy11529        125 ISVCYFESENDWWVAKHIKKP------IKSTITCLDWHPNN-HLLGCGSTDF  169 (244)
Q Consensus       125 i~i~d~~~~~~~~~~~~~~~~------~~~~v~~~~~~p~~-~~l~~~~~dg  169 (244)
                      -.||.-..+...|........      ....+..++++|.. +.++.+...+
T Consensus        92 ~~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~  143 (789)
T 1sqj_A           92 AAFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTE  143 (789)
T ss_dssp             CEEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSS
T ss_pred             cEEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccC
Confidence            344444444443443322111      11135678888743 4555555344

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=90.03  E-value=7.6  Score=32.45  Aligned_cols=191  Identities=11%  Similarity=0.085  Sum_probs=101.0

Q ss_pred             CceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCCCC
Q psy11529         10 NPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDK   89 (244)
Q Consensus        10 ~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~   89 (244)
                      ..|.++....+|. |-.|+.+| +..||...  ..+..  ........|.++.. .++. |..++.+ -+..+|  ..++
T Consensus        63 ~~i~~i~~d~~g~-lWigT~~G-l~~yd~~~--~~f~~--~~~~~~~~i~~i~~-~~g~-lWigt~~-Gl~~~~--~~~~  131 (758)
T 3ott_A           63 TRIYCGVIIDNTY-LYMGTDNG-ILVYNYRA--DRYEQ--PETDFPTDVRTMAL-QGDT-LWLGALN-GLYTYQ--LQSR  131 (758)
T ss_dssp             SCEEEEEEETTTE-EEEEETTE-EEEEETTT--TEECC--CSCCCCSCEEEEEE-ETTE-EEEEETT-EEEEEE--TTTC
T ss_pred             ceEEEEEEcCCCc-EEEEeCCC-eEEEeCCC--CEEEC--cccCCCceEEEEEe-cCCc-EEEEcCC-cceeEe--CCCC
Confidence            4688887777764 44555554 78888766  32221  11112335776654 3454 5555555 577888  6555


Q ss_pred             CceeeEEEe--ccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecC-----CCCceeEEEecCCCCEE
Q psy11529         90 KWKPTLVLL--RINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKP-----IKSTITCLDWHPNNHLL  162 (244)
Q Consensus        90 ~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~-----~~~~v~~~~~~p~~~~l  162 (244)
                      +........  .....|.++...+++.+.+ ++..| +..++......    .....+     ....|.++...+++..|
T Consensus       132 ~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~G-l~~~~~~~~~~----~~~~~~~~~~~~~~~i~~i~~d~~~~~l  205 (758)
T 3ott_A          132 KLTSFDTRRNGLPNNTIYSIIRTKDNQIYV-GTYNG-LCRYIPSNGKF----EGIPLPVHSSQSNLFVNSLLEDTTRQCV  205 (758)
T ss_dssp             CEEEECHHHHCCSCSCEEEEEECTTCCEEE-EETTE-EEEEETTTTEE----EEECCCCCTTCSSCCEEEEEEETTTTEE
T ss_pred             eEEEeccCCCCcCCCeEEEEEEcCCCCEEE-EeCCC-HhhCccCCCce----EEecCCCccccccceeEEEEEECCCCEE
Confidence            432110000  1134578888887776544 55554 66666544321    111111     12347888888777655


Q ss_pred             EEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCC
Q psy11529        163 GCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQ  241 (244)
Q Consensus       163 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~  241 (244)
                      -.|+. +-+..+|..                  ..+........   ...|.++....+|.+.+. +.+ -+.+++.++
T Consensus       206 Wigt~-~Gl~~~~~~------------------~~~~~~~~~l~---~~~i~~i~~d~~g~lWig-T~~-Gl~~~~~~~  260 (758)
T 3ott_A          206 WIGTE-GYLFQYFPS------------------TGQIKQTEAFH---NNSIKSLALDGNGDLLAG-TDN-GLYVYHNDT  260 (758)
T ss_dssp             EEEEE-EEEEEEETT------------------TTEEEEEEEEE---EEEEEEEEECTTCCEEEE-ETT-EEEEECCTT
T ss_pred             EEEEC-CCCeEEcCC------------------CCeEEeccCCC---CCeEEEEEEcCCCCEEEE-eCC-ceeEEecCC
Confidence            55554 457778762                  22211111111   345788888778876553 334 466776543

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=89.90  E-value=4.3  Score=29.35  Aligned_cols=141  Identities=12%  Similarity=0.034  Sum_probs=73.1

Q ss_pred             ceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCCC-C
Q psy11529         11 PVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDD-K   89 (244)
Q Consensus        11 ~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-~   89 (244)
                      .|..++.... ..++. . ||.|+.|-....+ ++..   -......|..++...+.. ++. . ||.+..|-  ... +
T Consensus        25 ~i~~ia~G~~-h~~~l-~-~G~v~~wG~n~~G-qlg~---p~~~~~~i~~ia~G~~hs-~~l-~-~G~v~~wG--~n~~G   92 (282)
T 3qhy_B           25 GVDAIAGGYF-HGLAL-K-GGKVLGWGANLNG-QLTM---PAATQSGVDAIAAGNYHS-LAL-K-DGEVIAWG--GNEDG   92 (282)
T ss_dssp             SCCEEEECSS-EEEEE-E-TTEEEEEECCSSS-TTSC---CGGGGSCCCEEEECSSEE-EEE-E-TTEEEEEE--CCTTS
T ss_pred             CCcEEEeCCC-eEEEE-E-CCEEEEEeCCCCC-CCCC---CccCCCCEEEEEeCCCEE-EEE-E-CCEEEEee--CCCCC
Confidence            4666665433 23333 4 8999999765421 1111   111234677777664332 333 4 89999998  332 2


Q ss_pred             CceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEeeCCC
Q psy11529         90 KWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDF  169 (244)
Q Consensus        90 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg  169 (244)
                      +.- .  .......|..++....  ..+.-. ++.+..|-.+...+..    ........|..++...+...+ . . ||
T Consensus        93 qlg-~--P~~~~~~v~~ia~G~~--hs~al~-~G~v~~wG~n~~gqlg----~~~~~~~~i~~i~~G~~~~~~-l-~-~G  159 (282)
T 3qhy_B           93 QTT-V--PAEARSGVDAIAAGAW--ASYALK-DGKVIAWGDDSDGQTT----VPAEAQSGVTALDGGVYTALA-V-K-NG  159 (282)
T ss_dssp             TTC-C--CGGGSSSEEEEEEETT--EEEEEE-TTEEEEEECCTTSTTS----CCGGGGSSEEEEEECSSEEEE-E-E-TT
T ss_pred             CCC-C--CcccCCCeEEEECcCC--EEEEEe-CCeEEEecCCCCCcCC----CCccCCCCeEEEEcccCEEEE-E-E-CC
Confidence            211 0  1112345666666543  333345 8999998776644311    111123456666654433222 2 3 68


Q ss_pred             eEEEEEe
Q psy11529        170 KVRVFSA  176 (244)
Q Consensus       170 ~i~i~d~  176 (244)
                      .++.|-.
T Consensus       160 ~v~~wG~  166 (282)
T 3qhy_B          160 GVIAWGD  166 (282)
T ss_dssp             EEEEEEC
T ss_pred             EEEEecC
Confidence            8888875

>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1

Probab=86.36  E-value=8.1  Score=28.41  Aligned_cols=209  Identities=11%  Similarity=-0.005  Sum_probs=109.0

Q ss_pred             CCCCeEEEecCCCeEEEeeeccCCC-----cceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeee-CCCC---
Q psy11529         19 NTRQQLAFTPNNQEVHLYQYEKAAN-----DWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQN-NDDK---   89 (244)
Q Consensus        19 ~~~~~l~~~~~d~~v~v~~~~~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~-~~~~---   89 (244)
                      ++...+++.+.+|.|+-..+..-..     .-.....++.. ..+..+........++..+..|.++-.... +...   
T Consensus         6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~-D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~   84 (312)
T 1suu_A            6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDG-DEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRA   84 (312)
T ss_dssp             --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTT-CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC----
T ss_pred             CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCC-CEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCcc
Confidence            5666788888999999877643100     00111223333 334444444445567777788887666521 1111   


Q ss_pred             ---Cce-eeEEEeccCcceEEEE-ECC--CCCeEEEeeCCCeEEEEEeecCCCce--EEEeeecCCCCceeEEEecCCCC
Q psy11529         90 ---KWK-PTLVLLRINRAATCVK-WSP--LENKFAAGSGARLISVCYFESENDWW--VAKHIKKPIKSTITCLDWHPNNH  160 (244)
Q Consensus        90 ---~~~-~~~~~~~~~~~v~~~~-~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~--~~~~~~~~~~~~v~~~~~~p~~~  160 (244)
                         ... ..+.+. ....+..+. ...  +..+++..+..|.++...+..-....  -.........+.+..+.......
T Consensus        85 ~~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~~d~lv~~~~~~~~~  163 (312)
T 1suu_A           85 SKGQNISELINLG-DQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLNDKDFVTSAEIVFKDE  163 (312)
T ss_dssp             ---CBGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCTTCCEEEEEEECTTC
T ss_pred             CCCcChhhccCCC-CCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCCCCEEEEEEEeCCCC
Confidence               000 011111 123344333 321  35678888999999887764432100  01111112245566665555556


Q ss_pred             EEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCC
Q psy11529        161 LLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQ  240 (244)
Q Consensus       161 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~  240 (244)
                      .++..+.+|.+..+....  +..... .      ..+.....+..    ...|..+..-.++..|++.+..|..+..++.
T Consensus       164 ~i~l~T~~G~~~r~~~~e--v~~~gR-~------~~Gv~~i~L~~----~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~  230 (312)
T 1suu_A          164 KVICLSKKGSAFIFNSRD--VRLTNR-G------TQGVCGMKLKE----GDLFVKVLSVKENPYLLIVSENGYGKRLNMS  230 (312)
T ss_dssp             EEEEEETTSEEEEEEGGG--SCBCCT-T------BCCEECCCCCT----TCCEEEEEECTTCSEEEEEETTSEEEEEEGG
T ss_pred             EEEEEeCCCcEEEEEHHH--ccccCC-C------CCCeEeEEeCC----CCEEEEEEEECCCCeEEEEECCCceEEEEHH
Confidence            788889999988888632  110000 0      12222333332    4456666555556678888899999988876


Q ss_pred             CC
Q psy11529        241 QV  242 (244)
Q Consensus       241 ~~  242 (244)
                      .+
T Consensus       231 e~  232 (312)
T 1suu_A          231 KI  232 (312)
T ss_dssp             GS
T ss_pred             Hh
Confidence            54

>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}

Probab=85.99  E-value=4.4  Score=32.87  Aligned_cols=59  Identities=15%  Similarity=0.103  Sum_probs=36.6

Q ss_pred             eeEEEecCCCCEEEEeeCC------------CeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEE
Q psy11529        150 ITCLDWHPNNHLLGCGSTD------------FKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVA  217 (244)
Q Consensus       150 v~~~~~~p~~~~l~~~~~d------------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  217 (244)
                      .-.|+|+|.|++++.-..+            ..+.+.+.                  ..++...-+..+.  ...++.++
T Consensus       478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~------------------~~g~~~rf~~~P~--gaE~TG~~  537 (592)
T 3zwu_A          478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADP------------------ATGEIRRFMVGPI--GCEVTGIS  537 (592)
T ss_dssp             EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECT------------------TTCCEEEEEECCT--TCEEEEEE
T ss_pred             CcceEECCCCCEEEEecCCCcccccccccccceEEEEeC------------------CCCeEEEEEeCCC--CccCcCee
Confidence            4568999999866553322            12333332                  3344444444432  67899999


Q ss_pred             EecCCCEEEEe
Q psy11529        218 FSKDGNKLCWT  228 (244)
Q Consensus       218 ~s~~~~~l~~~  228 (244)
                      |+||++.|+..
T Consensus       538 fspDg~tlfvn  548 (592)
T 3zwu_A          538 FSPDQKTLFVG  548 (592)
T ss_dssp             ECTTSSEEEEE
T ss_pred             ECCCCCEEEEE
Confidence            99999987654

>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}

Probab=85.28  E-value=9.6  Score=28.28  Aligned_cols=208  Identities=10%  Similarity=-0.021  Sum_probs=106.7

Q ss_pred             CeEEEecCCCeEEEeeeccC-----CCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeee-CCCCCc----
Q psy11529         22 QQLAFTPNNQEVHLYQYEKA-----ANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQN-NDDKKW----   91 (244)
Q Consensus        22 ~~l~~~~~d~~v~v~~~~~~-----~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~-~~~~~~----   91 (244)
                      ..+++-+.+|.|+--.+...     ++.-..-..++ ....+..+........|+.-+..|.++-.... +.....    
T Consensus         4 ~v~v~ls~~GyiKr~~~~~y~~~~rgg~g~~~~~~k-e~D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G   82 (327)
T 3uc1_A            4 DVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLK-QDDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARG   82 (327)
T ss_dssp             EEEEEEETTSEEEEEEHHHHHHHC--------CCCC-GGGCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCC
T ss_pred             cEEEEEeCCCEEEEeeHHHhhhcccCCCCccccccC-CCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCC
Confidence            35666778888886654220     00001111222 23344444444445556555667765543310 222210    


Q ss_pred             ee---eEEEeccCcceEEE-EECC--CCCeEEEeeCCCeEEEEEeecCCCce--EEEeeecCCCCceeEEEecCCCCEEE
Q psy11529         92 KP---TLVLLRINRAATCV-KWSP--LENKFAAGSGARLISVCYFESENDWW--VAKHIKKPIKSTITCLDWHPNNHLLG  163 (244)
Q Consensus        92 ~~---~~~~~~~~~~v~~~-~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~--~~~~~~~~~~~~v~~~~~~p~~~~l~  163 (244)
                      .+   .+.+. ....|..+ ...+  +..+++..+.+|.++--.+..-....  -...........+..+........|+
T Consensus        83 ~~i~~~l~l~-~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke~D~lv~~~~~~~~d~il  161 (327)
T 3uc1_A           83 QHVANLLAFQ-PEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRDNDELVGAVLCSAGDDLL  161 (327)
T ss_dssp             EEHHHHTTCC-TTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCTTCCEEEEEEECTTCEEE
T ss_pred             EEHHHccCCC-CCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECCCCEEEEEEEecCCCEEE
Confidence            11   01111 23344443 4442  57789999999999987765532200  01111111234555555555566788


Q ss_pred             EeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCCC
Q psy11529        164 CGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQV  242 (244)
Q Consensus       164 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~  242 (244)
                      ..+..|.+..+.....++......       ..+.....+..    ...|.++...+++.+|+..+..|.++.-.+..+
T Consensus       162 l~T~~G~~~rf~~~~~eip~~gr~-------a~Gv~~i~L~~----~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~  229 (327)
T 3uc1_A          162 LVSANGQSIRFSATDEALRPMGRA-------TSGVQGMRFNI----DDRLLSLNVVREGTYLLVATSGGYAKRTAIEEY  229 (327)
T ss_dssp             EEETTSEEEEEECCTTTSCCCCTT-------SBCEESSCCCT----TCCEEEEEECCTTCEEEEEETTSEEEEEEGGGS
T ss_pred             EEECCCeEEEEECcccccCcCCcC-------CCCeeeecCCC----CCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHc
Confidence            888999888887641122111000       12222222333    556777766666678889999999998877654

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=84.61  E-value=15  Score=31.89  Aligned_cols=32  Identities=25%  Similarity=0.058  Sum_probs=27.8

Q ss_pred             CCeEEEEEecCCCEEEEeeCCCcEEEEeCCCC
Q psy11529        211 GWIHSVAFSKDGNKLCWTSHDGSINVRMSQQV  242 (244)
Q Consensus       211 ~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~  242 (244)
                      ..+.+++..++..++++-+.|+++|+|++.+.
T Consensus       236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~  267 (950)
T 4gq2_M          236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTN  267 (950)
T ss_dssp             TCEEEEEEETTTTEEEEEETTCEEEEEETTTT
T ss_pred             ceEEEEeecCCCcEEEEEECCCEEEEEECCCC
Confidence            45677888888899999999999999998864

>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*

Probab=84.41  E-value=18  Score=30.62  Aligned_cols=155  Identities=12%  Similarity=0.100  Sum_probs=75.5

Q ss_pred             CCceEEEEEcCC-CCeEEEecCCCeEEEeeeccCCCcceeeeeecc----CCCceEEEEeCCC-CCeEEEEeCCcc----
Q psy11529          9 INPVTTHAWNNT-RQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDG----HDLKVTGIDWAPN-TNRIVTCSADRN----   78 (244)
Q Consensus         9 ~~~v~~~~~~~~-~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~-~~~l~~~~~d~~----   78 (244)
                      .+.|.+|+++|. ...+.+++..+.|...+=.+  ..++.+.....    ....|.+++++|. ...++.+..+..    
T Consensus        14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~DgG--~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~   91 (789)
T 1sqj_A           14 GGYITGIVAHPKTKDLLYARTDIGGAYRWDAGT--SKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEW   91 (789)
T ss_dssp             CSCEEEEEECSSSTTCEEEEESSSCEEEEETTT--TEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSC
T ss_pred             CCcEEEEEECCCCCCEEEEEecCCCEEEecCCC--CCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCcc
Confidence            478999999995 34555566556554333222  44555432111    1346999999984 344444432211    


Q ss_pred             EEEEeeeCCCCC-ceeeEEEec------cCcceEEEEECCC-CCeEEEeeCCCeEEEEEeecCCCceEEEeeec---CCC
Q psy11529         79 AYVWTQNNDDKK-WKPTLVLLR------INRAATCVKWSPL-ENKFAAGSGARLISVCYFESENDWWVAKHIKK---PIK  147 (244)
Q Consensus        79 i~iwd~~~~~~~-~~~~~~~~~------~~~~v~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~---~~~  147 (244)
                      -.||.- ...++ +........      ....+..++++|. ...++.+...+.  ||.-..+...|.......   ...
T Consensus        92 ~~v~~S-~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~g--l~~S~DgG~TW~~~~~~~~~~~~~  168 (789)
T 1sqj_A           92 AAFYVS-EDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEG--IWKSSDRAKTWTNVTSIPDAFTNG  168 (789)
T ss_dssp             CEEEEE-SSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSC--EEEESSTTSSCEEETTSCCCCSTT
T ss_pred             cEEEEE-CCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCC--EEEECCCCcccCCCccCccccCCC
Confidence            344441 12222 221110000      0113456888875 345555553433  343444333343332211   112


Q ss_pred             CceeEEEecCC-CCEEEEeeCC
Q psy11529        148 STITCLDWHPN-NHLLGCGSTD  168 (244)
Q Consensus       148 ~~v~~~~~~p~-~~~l~~~~~d  168 (244)
                      ..+..+.++|. +..++.+..+
T Consensus       169 ~~~~~i~~~p~~~~~~~~~~~~  190 (789)
T 1sqj_A          169 IGYTSVIFDPERNGTIYASATA  190 (789)
T ss_dssp             TCEEEEEECTTSTTCEEEEESS
T ss_pred             CCeEEEEECCCCCCEEEEEEcC
Confidence            45788999884 4455555544

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=83.42  E-value=11  Score=27.27  Aligned_cols=141  Identities=13%  Similarity=-0.008  Sum_probs=73.1

Q ss_pred             ceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCCC-C
Q psy11529         11 PVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDD-K   89 (244)
Q Consensus        11 ~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-~   89 (244)
                      .|..++...+ ..++. . ||.|+.|-....+ +......   -...|..++...+  +.+.-. +|.|..|-  ... +
T Consensus        64 ~i~~ia~G~~-hs~~l-~-~G~v~~wG~n~~G-qlg~P~~---~~~~v~~ia~G~~--hs~al~-~G~v~~wG--~n~~g  131 (282)
T 3qhy_B           64 GVDAIAAGNY-HSLAL-K-DGEVIAWGGNEDG-QTTVPAE---ARSGVDAIAAGAW--ASYALK-DGKVIAWG--DDSDG  131 (282)
T ss_dssp             CCCEEEECSS-EEEEE-E-TTEEEEEECCTTS-TTCCCGG---GSSSEEEEEEETT--EEEEEE-TTEEEEEE--CCTTS
T ss_pred             CEEEEEeCCC-EEEEE-E-CCEEEEeeCCCCC-CCCCCcc---cCCCeEEEECcCC--EEEEEe-CCeEEEec--CCCCC
Confidence            4555554433 23333 4 7888888764321 1111111   1346777776643  334445 89999998  332 2


Q ss_pred             CceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEeeCCC
Q psy11529         90 KWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDF  169 (244)
Q Consensus        90 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg  169 (244)
                      +. ..  .......+..++....  ..+.-. |+.+..|-.....+..    ........|..++-..+. .++.  .||
T Consensus       132 ql-g~--~~~~~~~i~~i~~G~~--~~~~l~-~G~v~~wG~n~~gqlg----~p~~~~~~v~~i~~G~~h-s~al--~~G  198 (282)
T 3qhy_B          132 QT-TV--PAEAQSGVTALDGGVY--TALAVK-NGGVIAWGDNYFGQTT----VPAEAQSGVDDVAGGIFH-SLAL--KDG  198 (282)
T ss_dssp             TT-SC--CGGGGSSEEEEEECSS--EEEEEE-TTEEEEEECCTTSTTS----CCGGGGSSEEEEEECSSE-EEEE--ETT
T ss_pred             cC-CC--CccCCCCeEEEEcccC--EEEEEE-CCEEEEecCCCCCCCC----CceecCCCeEEEEecCCE-EEEE--ECC
Confidence            21 11  1122345666666443  222233 7888888776544311    111123467777665443 3333  589


Q ss_pred             eEEEEEe
Q psy11529        170 KVRVFSA  176 (244)
Q Consensus       170 ~i~i~d~  176 (244)
                      .++.|-.
T Consensus       199 ~v~~wG~  205 (282)
T 3qhy_B          199 KVIAWGD  205 (282)
T ss_dssp             EEEEEEC
T ss_pred             eEEEEEC
Confidence            9999975

>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}

Probab=83.38  E-value=5.9  Score=32.16  Aligned_cols=61  Identities=11%  Similarity=0.204  Sum_probs=36.5

Q ss_pred             eEEEEECCCCCeEEEeeCC----------CeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEe
Q psy11529        104 ATCVKWSPLENKFAAGSGA----------RLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCG  165 (244)
Q Consensus       104 v~~~~~~~~~~~l~~~~~d----------~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~  165 (244)
                      .-.|.|+|.|++++.-..+          +.-.+|-...... ........+....++.++|+||++.|.+.
T Consensus       478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g-~~~rf~~~P~gaE~TG~~fspDg~tlfvn  548 (592)
T 3zwu_A          478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATG-EIRRFMVGPIGCEVTGISFSPDQKTLFVG  548 (592)
T ss_dssp             EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTC-CEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred             CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCC-eEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence            3568999999865554322          1123333332221 12333344566899999999999877664

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=82.74  E-value=23  Score=30.71  Aligned_cols=32  Identities=22%  Similarity=0.282  Sum_probs=26.6

Q ss_pred             ceeEEEecCCCCEEEEeeCCCeEEEEEeeecc
Q psy11529        149 TITCLDWHPNNHLLGCGSTDFKVRVFSAYIKD  180 (244)
Q Consensus       149 ~v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~  180 (244)
                      .+.+++..++..++++-+.|+++|+|++.+..
T Consensus       237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~  268 (950)
T 4gq2_M          237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQ  268 (950)
T ss_dssp             CEEEEEEETTTTEEEEEETTCEEEEEETTTTE
T ss_pred             eEEEEeecCCCcEEEEEECCCEEEEEECCCCC
Confidence            46677777888899999999999999986544

>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*

Probab=82.55  E-value=9.9  Score=30.73  Aligned_cols=61  Identities=15%  Similarity=0.113  Sum_probs=36.7

Q ss_pred             CceeEEEecCCCCEEEEeeCC------------CeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEE
Q psy11529        148 STITCLDWHPNNHLLGCGSTD------------FKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHS  215 (244)
Q Consensus       148 ~~v~~~~~~p~~~~l~~~~~d------------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  215 (244)
                      .....+.|+++|.+.+.....            ..+..++.                  .+++...-+....  ...++.
T Consensus       476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp------------------~tGel~~fl~~P~--~aEpnG  535 (592)
T 4a9v_A          476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADP------------------ATGEIRRFMVGPI--GCEVTG  535 (592)
T ss_dssp             CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECT------------------TTCCEEEEEECCT--TCEEEE
T ss_pred             CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeC------------------CCCeEEEEEeCCC--CccccC
Confidence            345679999999866632211            13444433                  3344444343321  456899


Q ss_pred             EEEecCCCEEEEe
Q psy11529        216 VAFSKDGNKLCWT  228 (244)
Q Consensus       216 ~~~s~~~~~l~~~  228 (244)
                      ++|+||++.|+..
T Consensus       536 iafSPD~ktLfV~  548 (592)
T 4a9v_A          536 ISFSPDQKTLFVG  548 (592)
T ss_dssp             EEECTTSSEEEEE
T ss_pred             CEECCCCCEEEEE
Confidence            9999999987765

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=81.36  E-value=21  Score=31.68  Aligned_cols=31  Identities=26%  Similarity=0.055  Sum_probs=26.1

Q ss_pred             CeEEEEEecCCCEEEEeeCCCcEEEEeCCCC
Q psy11529        212 WIHSVAFSKDGNKLCWTSHDGSINVRMSQQV  242 (244)
Q Consensus       212 ~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~  242 (244)
                      .+.+++..++..++++-+.|+++|+|++.+.
T Consensus       239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~  269 (1139)
T 4fhn_B          239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTN  269 (1139)
T ss_dssp             CBSCCEEETTTTEEEEEBTTCEEEEEETTTT
T ss_pred             eeEEeeccCCccEEEEEeCCCEEEEEECCCC
Confidence            4556677788899999999999999999864

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=81.34  E-value=8.3  Score=34.15  Aligned_cols=32  Identities=22%  Similarity=0.282  Sum_probs=25.4

Q ss_pred             ceeEEEecCCCCEEEEeeCCCeEEEEEeeecc
Q psy11529        149 TITCLDWHPNNHLLGCGSTDFKVRVFSAYIKD  180 (244)
Q Consensus       149 ~v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~  180 (244)
                      .+.+++..++..++++-+.|+++|+|++.+..
T Consensus       239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~  270 (1139)
T 4fhn_B          239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQ  270 (1139)
T ss_dssp             CBSCCEEETTTTEEEEEBTTCEEEEEETTTTE
T ss_pred             eeEEeeccCCccEEEEEeCCCEEEEEECCCCC
Confidence            34556666788899999999999999996553

>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}

Probab=80.39  E-value=14  Score=26.61  Aligned_cols=210  Identities=12%  Similarity=-0.024  Sum_probs=111.2

Q ss_pred             CCceEEEEEcCCCCeEEEecCCCeEEE---eeeccCCCcceeeeeeccCCCceEEEEeCC-CCCeEEEEeCCccEEEEee
Q psy11529          9 INPVTTHAWNNTRQQLAFTPNNQEVHL---YQYEKAANDWSQLDVLDGHDLKVTGIDWAP-NTNRIVTCSADRNAYVWTQ   84 (244)
Q Consensus         9 ~~~v~~~~~~~~~~~l~~~~~d~~v~v---~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~   84 (244)
                      .+.+..+.-......|+.-+..|.++-   +++..  .....+  +. ....|..+.... +..+++..+.+|.++-..+
T Consensus        23 gD~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~--~~~~~l--l~-~~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l   97 (276)
T 3no0_A           23 KAPVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQ--GSKVSL--KS-REEKIVGAFIREKFGNRLLLATKKGYVKKIPL   97 (276)
T ss_dssp             CCCEEEEEEEETTSCEEEEETTSEEEEECSHHHHT--SEECCC--SS-TTCCEEEEEEGGGSCSEEEEEETTSEEEEEEG
T ss_pred             CCeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCcc--Cccccc--CC-CCCEEEEEECCcCCCCEEEEEeCCCEEEEEEH
Confidence            345555544444445555556777664   34432  111112  43 355666664421 4678899999999998873


Q ss_pred             eCCCCC----ceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCC-----ceEEEeeecCCCCceeEEEe
Q psy11529         85 NNDDKK----WKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESEND-----WWVAKHIKKPIKSTITCLDW  155 (244)
Q Consensus        85 ~~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~-----~~~~~~~~~~~~~~v~~~~~  155 (244)
                        ..-.    -...+.+. ....+..+........++..+..|.+..+....-..     ..... ........+..+..
T Consensus        98 --~~~~~~~~G~~~i~lk-egD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~-i~L~~~d~vv~~~~  173 (276)
T 3no0_A           98 --AEFEYKAQGMPIIKLT-EGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQG-IKLEKNDETSGLRI  173 (276)
T ss_dssp             --GGTTTCSTTEECSCCC-TTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEEC-CCCCTTCCEEEEEE
T ss_pred             --HHhhhhcCCeEEEecC-CCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEE-EccCCCCEEEEEEE
Confidence              2211    01111222 234555555555566788888899888776533211     00111 11122355666655


Q ss_pred             cCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEE
Q psy11529        156 HPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSIN  235 (244)
Q Consensus       156 ~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~  235 (244)
                      .+++..++..+..|.++...+.......           +.++-+..+..    ...+-.+....+...++..+.+|.+.
T Consensus       174 ~~~~~~ll~~T~~G~~kr~~~~e~~~~~-----------R~gkGv~~i~~----~~~lv~~~~~~~~~~i~~~t~~G~~i  238 (276)
T 3no0_A          174 WNGEPYLLVITAKGRVKKISHEEIPKTN-----------RGVKGTEVSGT----KDTLVDLIPIKEEVELLITTKNGKAF  238 (276)
T ss_dssp             ESSCSEEEEEETTSCEEEEEGGGSCCCC-----------TTCCCEECCCS----SSCEEEEEEESSEEEEEEEETTSCEE
T ss_pred             eCCCCEEEEEeCCCcEEEeEHHHcccCC-----------CCCcceEEEcC----CCcEEEEEEeCCCCEEEEEcCCCeEE
Confidence            5666788888999998888763211110           11222222221    33444444333344566677788877


Q ss_pred             E--EeCCCC
Q psy11529        236 V--RMSQQV  242 (244)
Q Consensus       236 v--wd~~~~  242 (244)
                      .  ++++..
T Consensus       239 r~~~~~~~i  247 (276)
T 3no0_A          239 YDKINQKDI  247 (276)
T ss_dssp             EEEEEGGGS
T ss_pred             EeeeCHHHC
Confidence            7  776654

>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}

Probab=80.08  E-value=16  Score=27.10  Aligned_cols=174  Identities=10%  Similarity=0.019  Sum_probs=90.0

Q ss_pred             CCceEEE-EeCC--CCCeEEEEeCCccEEEEeee-CCCCC--ceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEE
Q psy11529         55 DLKVTGI-DWAP--NTNRIVTCSADRNAYVWTQN-NDDKK--WKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVC  128 (244)
Q Consensus        55 ~~~v~~~-~~~~--~~~~l~~~~~d~~i~iwd~~-~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~  128 (244)
                      ...|.++ ....  +..+++.++.+|.++--.+. .....  -...+.+.. ...+..+........++..+..|.+..+
T Consensus        94 ~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~~~d~ill~T~~G~~~rf  172 (327)
T 3uc1_A           94 EERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCSAGDDLLLVSANGQSIRF  172 (327)
T ss_dssp             TCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEECTTCEEEEEETTSEEEEE
T ss_pred             CCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEecCCCEEEEEECCCeEEEE
Confidence            3455554 4442  57789999999999987731 11111  111122222 3445444444455678888888988877


Q ss_pred             Eee--cCCC-----ceEEEeeecCCCCceeEEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeE
Q psy11529        129 YFE--SEND-----WWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLV  201 (244)
Q Consensus       129 d~~--~~~~-----~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (244)
                      ...  .-..     ... ..........|.++...+++..++..+..|.++.-.+......  ...       ..+....
T Consensus       173 ~~~~~eip~~gr~a~Gv-~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~--~R~-------~~G~~~~  242 (327)
T 3uc1_A          173 SATDEALRPMGRATSGV-QGMRFNIDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQ--GRG-------GKGVLTV  242 (327)
T ss_dssp             ECCTTTSCCCCTTSBCE-ESSCCCTTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBC--CTT-------SCCEESS
T ss_pred             ECcccccCcCCcCCCCe-eeecCCCCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHcccc--CcC-------CCcEEEE
Confidence            766  2110     001 1111122355666666666678888999998888776311111  000       0111111


Q ss_pred             EecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCCC
Q psy11529        202 ELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQV  242 (244)
Q Consensus       202 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~  242 (244)
                      .+...   ...+-.+....+...++..+.+|.+.-+++...
T Consensus       243 ~l~~~---~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~~i  280 (327)
T 3uc1_A          243 MYDRR---RGRLVGALIVDDDSELYAVTSGGGVIRTAARQV  280 (327)
T ss_dssp             CCCTT---TCSEEEEEEECTTCEEEEEEGGGCEEEEEGGGS
T ss_pred             EecCC---CCeEEEEEEeCCCccEEEEcCCCeEEEEehhhc
Confidence            22211   223444443334445666677777777766544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	244
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	3e-20
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	6e-11
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	4e-10
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	8e-06
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	9e-08
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-07
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	8e-04
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	6e-07
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	3e-05
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	4e-05
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	7e-05
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	6e-06
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	6e-04
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	3e-05
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	5e-05
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	1e-04
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	7e-04
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	8e-04
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	9e-04
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	0.002
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	0.002
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	0.003
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	0.004

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 86.1 bits (211), Expect = 3e-20
 Identities = 129/238 (54%), Positives = 168/238 (70%), Gaps = 7/238 (2%)

Query: 4   VYSFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDW 63
            +SF + P++ HAWN  R Q+A  PNN EVH+Y+     N W Q+  L  H+ +VTG+DW
Sbjct: 2   YHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKS--GNKWVQVHELKEHNGQVTGVDW 59

Query: 64  APNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGAR 123
           AP++NRIVTC  DRNAYVW      + WKPTLV+LRINRAA CV+W+P E KFA GSG+R
Sbjct: 60  APDSNRIVTCGTDRNAYVW--TLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSR 117

Query: 124 LISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIES 183
           +IS+CYFE ENDWWV KHIKKPI+ST+  LDWHPN+ LL  GS DFK R+FSAYIK++E 
Sbjct: 118 VISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEE 177

Query: 184 APQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQ 241
            P  T WGSK   G  + E ++S    GW+H V FS +G+++ W SHD ++ +  + +
Sbjct: 178 RPAPTPWGSKMPFGELMFESSSSC---GWVHGVCFSANGSRVAWVSHDSTVCLADADK 232

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 59.4 bits (142), Expect = 6e-11
 Identities = 31/183 (16%), Positives = 57/183 (31%), Gaps = 27/183 (14%)

Query: 54  HDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLE 113
           H   V  +  AP+T   V+ + D +A +W    D ++                + + P  
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLW----DVREGMCRQTFTGHESDINAICFFPNG 238

Query: 114 NKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRV 173
           N FA GS      +    ++ +     +    I   IT + +  +  LL  G  DF   V
Sbjct: 239 NAFATGSDDATCRLFDLRADQELM--TYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNV 296

Query: 174 FSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGS 233
           +     D                 +    L         +  +  + DG  +   S D  
Sbjct: 297 W-----DALK-------------ADRAGVLAGHD---NRVSCLGVTDDGMAVATGSWDSF 335

Query: 234 INV 236
           + +
Sbjct: 336 LKI 338

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 56.7 bits (135), Expect = 4e-10
 Identities = 24/166 (14%), Positives = 50/166 (30%), Gaps = 10/166 (6%)

Query: 10  NPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNR 69
             V + +     +       +    L+       +        GH+  +  I + PN N 
Sbjct: 185 GDVMSLSLAPDTRLFVSGACDASAKLWD----VREGMCRQTFTGHESDINAICFFPNGNA 240

Query: 70  IVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCY 129
             T S D    ++    D +    +     I    T V +S       AG      +V  
Sbjct: 241 FATGSDDATCRLFDLRADQELMTYSHD--NIICGITSVSFSKSGRLLLAGYDDFNCNVWD 298

Query: 130 FESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFS 175
                       +     + ++CL    +   +  GS D  +++++
Sbjct: 299 ALK----ADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 44.0 bits (102), Expect = 8e-06
 Identities = 26/212 (12%), Positives = 59/212 (27%), Gaps = 24/212 (11%)

Query: 50  VLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKW 109
            L GH  K+  + W  ++  +V+ S D    +W              +   +       +
Sbjct: 50  TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYT----TNKVHAIPLRSSWVMTCAY 105

Query: 110 SPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDF 169
           +P  N  A G    + S+   ++                 ++C  +  +N ++       
Sbjct: 106 APSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTT 165

Query: 170 KVRVFSAYIKDIESAPQSTNWGSK-----------STLGNCLVELNNSSSG--------- 209
                    +   +    T                S   +   +L +   G         
Sbjct: 166 CALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGH 225

Query: 210 GGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQ 241
              I+++ F  +GN     S D +  +   + 
Sbjct: 226 ESDINAICFFPNGNAFATGSDDATCRLFDLRA 257

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.8 bits (117), Expect = 9e-08
 Identities = 29/188 (15%), Positives = 53/188 (28%), Gaps = 32/188 (17%)

Query: 63  WAPNTNRIVTCSADRNAYVW---TQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAG 119
              +   I   S DR   VW   T    ++             +   V ++       +G
Sbjct: 213 SPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSG 272

Query: 120 SGARLISVCYFESEND--------WWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKV 171
           S  R + +   ++ N+            +      K  +  +    N+  +  GS D  V
Sbjct: 273 SLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGV 332

Query: 172 RVFSAYIKDIESAPQSTNWGSKSTLGNCLVEL---NNSSSGGGWIHSVAFSKDGNKLCWT 228
             +     D +S             GN L+ L    NS       +  +   + N     
Sbjct: 333 LFW-----DKKS-------------GNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATG 374

Query: 229 SHDGSINV 236
           S D    +
Sbjct: 375 SGDCKARI 382

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.4 bits (116), Expect = 1e-07
 Identities = 27/174 (15%), Positives = 58/174 (33%), Gaps = 13/174 (7%)

Query: 15  HAWNNTRQQLAFTPNNQEVHLYQYEKAANDW---SQLDVLDGHDLKVTGIDWAPNTNRIV 71
                  + +A    ++ V ++  E         S+ +   GH   V  + +  +   +V
Sbjct: 211 AVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVV 270

Query: 72  TCSADRNAYVWTQNNDDKK--------WKPTLVLLRINRAATCVKWSPLENKFAAGSGAR 123
           + S DR+  +W   N + K            +  +        V  +  +    +GS  R
Sbjct: 271 SGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDR 330

Query: 124 LISVCYFESENDWWVAKHIKKPIKS--TITCLDWHPNNHLLGCGSTDFKVRVFS 175
            +     +S N   + +  +  + S          P  ++   GS D K R++ 
Sbjct: 331 GVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWK 384

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.9 bits (86), Expect = 8e-04
 Identities = 31/227 (13%), Positives = 62/227 (27%), Gaps = 39/227 (17%)

Query: 53  GHDLKVTGIDWAPNTNRIVTCSADRNAYVW--------------TQNNDDKKWKPTLVLL 98
            H   V  + ++ +   + T   ++   V+              +  N D +   T    
Sbjct: 60  DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSP 118

Query: 99  RINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPN 158
             +     V +SP     A G+  RLI +   E+     + +  ++ I S          
Sbjct: 119 SSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKL 178

Query: 159 NHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLV----------------- 201
               G  +              +      T        G  +                  
Sbjct: 179 VSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGF 238

Query: 202 -------ELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQ 241
                  E  + +     ++SV F++DG  +   S D S+ +   Q 
Sbjct: 239 LVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQN 285

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.0 bits (110), Expect = 6e-07
 Identities = 27/210 (12%), Positives = 56/210 (26%), Gaps = 41/210 (19%)

Query: 43  NDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRINR 102
                +    GH   V  +    +   I +CS D+   VW         +    L     
Sbjct: 131 QTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVW----VVATKECKAELREHRH 186

Query: 103 AATCVKWSPLENKFAAGSGARLISVCYFESENDWWVA----------------KHIKKPI 146
              C+ W+P  +  +        +    +                               
Sbjct: 187 VVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGH 246

Query: 147 KSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNS 206
            + +  + +H     +   + D  +RV+     D ++               C+  LN  
Sbjct: 247 DNWVRGVLFHSGGKFILSCADDKTLRVW-----DYKN-------------KRCMKTLNAH 288

Query: 207 SSGGGWIHSVAFSKDGNKLCWTSHDGSINV 236
                ++ S+ F K    +   S D ++ V
Sbjct: 289 E---HFVTSLDFHKTAPYVVTGSVDQTVKV 315

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.0 bits (97), Expect = 3e-05
 Identities = 14/73 (19%), Positives = 34/73 (46%), Gaps = 4/73 (5%)

Query: 10  NPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNR 69
           N V    +++  + +    +++ + ++ Y+    +   +  L+ H+  VT +D+      
Sbjct: 248 NWVRGVLFHSGGKFILSCADDKTLRVWDYK----NKRCMKTLNAHEHFVTSLDFHKTAPY 303

Query: 70  IVTCSADRNAYVW 82
           +VT S D+   VW
Sbjct: 304 VVTGSVDQTVKVW 316

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.7 bits (96), Expect = 4e-05
 Identities = 18/141 (12%), Positives = 42/141 (29%), Gaps = 8/141 (5%)

Query: 34  HLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKWKP 93
           H +  E  +                           +++ S D+   +W    D      
Sbjct: 184 HRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMW----DVSTGMC 239

Query: 94  TLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCL 153
            + L+  +     V +        + +  + + V  +++              +  +T L
Sbjct: 240 LMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKN----KRCMKTLNAHEHFVTSL 295

Query: 154 DWHPNNHLLGCGSTDFKVRVF 174
           D+H     +  GS D  V+V+
Sbjct: 296 DFHKTAPYVVTGSVDQTVKVW 316

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.9 bits (94), Expect = 7e-05
 Identities = 23/186 (12%), Positives = 48/186 (25%), Gaps = 8/186 (4%)

Query: 50  VLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKW 109
            L GH   VT + + P  + +V+ S D    VW    D +       L     +   + +
Sbjct: 12  ALSGHRSPVTRVIFHPVFSVMVSASEDATIKVW----DYETGDFERTLKGHTDSVQDISF 67

Query: 110 SPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDF 169
                       +    +     +   +            ++ +   PN   +   S D 
Sbjct: 68  DHSGKLL----ASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDK 123

Query: 170 KVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTS 229
            ++++                  +    N    L  S S    +     +    K     
Sbjct: 124 TIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELRE 183

Query: 230 HDGSIN 235
           H   + 
Sbjct: 184 HRHVVE 189

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.5 bits (103), Expect = 6e-06
 Identities = 29/213 (13%), Positives = 60/213 (28%), Gaps = 26/213 (12%)

Query: 46  SQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVL-------- 97
           +  +    HD  +  +    +    V+CS D    VW     D +               
Sbjct: 5   ATANAGKAHDADIFSVSACNSF--TVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSG 62

Query: 98  -LRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPI------KSTI 150
              ++      + +      A  S +  +       E++       K  +      K + 
Sbjct: 63  LHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSF 122

Query: 151 TCLDWHP-----NNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNN 205
             L W        +H L          ++  +    ES   + NW     L   +     
Sbjct: 123 WALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMT 182

Query: 206 SSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRM 238
            S    +  SV  S+ G  +    ++G++ +  
Sbjct: 183 PSQ---FATSVDISERG-LIATGFNNGTVQISE 211

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.3 bits (87), Expect = 6e-04
 Identities = 28/190 (14%), Positives = 58/190 (30%), Gaps = 8/190 (4%)

Query: 49  DVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVK 108
           D L  H L  T +       +    + + N+     +   +        +  ++ AT V 
Sbjct: 132 DRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVD 191

Query: 109 WSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIK--STITCLDWHPNNHLLGCGS 166
            S      A G     + +    +    +  +     I   ++I  + + P   LL    
Sbjct: 192 ISE-RGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAH 250

Query: 167 TDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLC 226
                   + Y  + E   +  +    +      +     S    W+ S++F+  G  LC
Sbjct: 251 DSNSFGCITLY--ETEFGERIGSLSVPTHSSQASLGEFAHS---SWVMSLSFNDSGETLC 305

Query: 227 WTSHDGSINV 236
               DG +  
Sbjct: 306 SAGWDGKLRF 315

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.1 bits (97), Expect = 3e-05
 Identities = 29/199 (14%), Positives = 60/199 (30%), Gaps = 31/199 (15%)

Query: 42  ANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRIN 101
               + L  L GH           +   +V+ S D +  VW    D +       L    
Sbjct: 164 PETETCLHTLQGHT--NRVYSLQFDGIHVVSGSLDTSIRVW----DVETGNCIHTLTGHQ 217

Query: 102 RAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHL 161
              + ++     N   +G+    + +            + ++ P K          N + 
Sbjct: 218 SLTSGMELKD--NILVSGNADSTVKIW---DIKTGQCLQTLQGPNKHQSAVTCLQFNKNF 272

Query: 162 LGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGG--GWIHSVAFS 219
           +   S D  V+++     D+++             G  +  L    SGG  G +  +  S
Sbjct: 273 VITSSDDGTVKLW-----DLKT-------------GEFIRNLVTLESGGSGGVVWRIRAS 314

Query: 220 KDGNKLCWTSHDGSINVRM 238
                    S +G+   ++
Sbjct: 315 NTKLVCAVGSRNGTEETKL 333

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.4 bits (95), Expect = 5e-05
 Identities = 11/113 (9%), Positives = 31/113 (27%), Gaps = 1/113 (0%)

Query: 48  LDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCV 107
           + +       ++ I   P+ + ++  S D +  V+  +   K     L  LR      C 
Sbjct: 4   VQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDL-LQSLRYKHPLLCC 62

Query: 108 KWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNH 160
            +    +        +   +      +  + A    +          +  +  
Sbjct: 63  NFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKL 115

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.9 bits (91), Expect = 1e-04
 Identities = 22/111 (19%), Positives = 38/111 (34%), Gaps = 8/111 (7%)

Query: 57  KVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAA-TCVKWSPLENK 115
             T + + P TN I       +A+V   ++ D K  P +       +  T VK+SP++  
Sbjct: 19  FTTHLSYDPTTNAIAYPCGK-SAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGS 77

Query: 116 FAAGSGARLISVCYFESENDWWVA------KHIKKPIKSTITCLDWHPNNH 160
               SG     V  +    D          K   + +   I+ + W     
Sbjct: 78  QYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGR 128

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 37.9 bits (86), Expect = 7e-04
 Identities = 22/231 (9%), Positives = 54/231 (23%), Gaps = 17/231 (7%)

Query: 13  TTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLK-------VTGIDWAP 65
              A +   + LA   +   + L  +E      +  D       K       +T + WA 
Sbjct: 85  FGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWAR 144

Query: 66  NTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLI 125
           + +++     D +          +            ++     ++  +            
Sbjct: 145 DGSKLYGLGRDLHVMDPEAGTLVEDKP--------IQSWEAETYAQPDVLAVWNQHESSG 196

Query: 126 SVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAP 185
            +          +        ++ +  +D       +            +A       A 
Sbjct: 197 VMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAF 256

Query: 186 QSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINV 236
            + N      L                 +SV  S DG+ +      G +  
Sbjct: 257 GAYNVLESFDLEKN--ASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAA 305

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 37.8 bits (86), Expect = 8e-04
 Identities = 28/244 (11%), Positives = 60/244 (24%), Gaps = 14/244 (5%)

Query: 1   MAEVYSFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTG 60
           ++ V       + + A +   +++  T N  +     Y             DG + K   
Sbjct: 80  LSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVR 139

Query: 61  IDWAPNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGS 120
               P    ++  + D + YV   +      K                 +     ++A  
Sbjct: 140 TFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYT------VALPLRNWNRKGYSAPD 193

Query: 121 GARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKD 180
                       E          K  K      D       +   +     + F+   + 
Sbjct: 194 VLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTEL 253

Query: 181 IESAPQSTNWGSKSTLGNCLVELNNSSSG--------GGWIHSVAFSKDGNKLCWTSHDG 232
             +  +S    ++       +   +                + VAF K G+KL       
Sbjct: 254 YFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFN 313

Query: 233 SINV 236
            + V
Sbjct: 314 DLAV 317

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 37.7 bits (86), Expect = 9e-04
 Identities = 11/223 (4%), Positives = 43/223 (19%), Gaps = 20/223 (8%)

Query: 24  LAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGID--------WAPNTNRIVTCSA 75
           +    ++  +  + +  +         L         +                    S 
Sbjct: 129 IGNCASSACLLFFLFGSS-----AAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSC 183

Query: 76  DRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESEND 135
             +                       +  +              + A  I      +   
Sbjct: 184 PASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPA-AG 242

Query: 136 WWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKST 195
             +   I                  ++        + + +        A         ++
Sbjct: 243 ATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTAS 302

Query: 196 LGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTS--HDGSINV 236
           +G     +    S G    ++  ++DG    + +      +++
Sbjct: 303 VGQTSGPI----SNGHDSDAIIAAQDGASDNYANSAGTEVLDI 341

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.4 bits (82), Expect = 0.002
 Identities = 30/192 (15%), Positives = 55/192 (28%), Gaps = 8/192 (4%)

Query: 50  VLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKW 109
            L GH   V         N ++T + D+   V+    D    K  L L   +     +K+
Sbjct: 7   TLRGHMTSVITC-LQFEDNYVITGADDKMIRVY----DSINKKFLLQLSGHDGGVWALKY 61

Query: 110 SPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDF 169
           +       +GS  R + V   +      V +     ++        +    +   GS D 
Sbjct: 62  AH-GGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIV--TGSRDN 118

Query: 170 KVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTS 229
            + V+    +         +                    G        S  GN +   S
Sbjct: 119 TLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGS 178

Query: 230 HDGSINVRMSQQ 241
           +D ++ V    Q
Sbjct: 179 YDNTLIVWDVAQ 190

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.3 bits (82), Expect = 0.002
 Identities = 17/163 (10%), Positives = 32/163 (19%), Gaps = 2/163 (1%)

Query: 53  GHDLKVTGIDWAPNTNRIVTCSADRNAYVW-TQNNDDKKWKPTLVLLRINRAATCVKWSP 111
            H   V  +  +  T  + T        VW   +  +K     L  L  +      K  P
Sbjct: 49  NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLP 107

Query: 112 LENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKV 171
                  G  A  +S+    +      A+            +          C   +  V
Sbjct: 108 DGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAV 167

Query: 172 RVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIH 214
                     +    +          +                
Sbjct: 168 WDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSW 210

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.9 bits (81), Expect = 0.003
 Identities = 22/220 (10%), Positives = 53/220 (24%), Gaps = 32/220 (14%)

Query: 17  WNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSAD 76
           +       +    +            ++ + +    GH    + ID + +  ++ T   D
Sbjct: 145 YALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLD 204

Query: 77  RNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDW 136
                W      +  +              + + P     A G  +  + V +    + +
Sbjct: 205 NTVRSWDLREGRQLQQHD-----FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY 259

Query: 137 WVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTL 196
            +  H     +S +  L +            D  +  +                      
Sbjct: 260 QLHLH-----ESCVLSLKFAYCGKWFVSTGKDNLLNAWRT------------------PY 296

Query: 197 GNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINV 236
           G  + +          + S   S D   +   S D    V
Sbjct: 297 GASIFQSK----ESSSVLSCDISVDDKYIVTGSGDKKATV 332

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.6 bits (80), Expect = 0.004
 Identities = 11/70 (15%), Positives = 25/70 (35%), Gaps = 5/70 (7%)

Query: 106 CVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCG 165
            +K++     F +     L++          + +K       S++   D   ++  +  G
Sbjct: 270 SLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKE-----SSSVLSCDISVDDKYIVTG 324

Query: 166 STDFKVRVFS 175
           S D K  V+ 
Sbjct: 325 SGDKKATVYE 334

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	244
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.98
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.98
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.98
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.97
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.97
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.97
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.96
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.96
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.95
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.93
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.93
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.92
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.92
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.91
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.91
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.9
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.9
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.9
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.9
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.87
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.86
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.82
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.81
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.81
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.81
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.8
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.66
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.62
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.58
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.57
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.53
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.5
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.5
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.48
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.47
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.45
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.44
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.43
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.39
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.38
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.37
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.36
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.27
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.27
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.24
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.2
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.2
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	99.16
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	99.15
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.14
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	99.13
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	99.12
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.04
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.8
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	98.24
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	98.19
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.13
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	97.67
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	97.63
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	97.59
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.54
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.47
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	97.43
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	97.36
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	97.19
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	97.16
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	97.0
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	96.77
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	96.69
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	96.52
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	96.46
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	96.21
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	96.16
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	96.14
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	96.09
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	95.96
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	95.89
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	95.81
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	95.17
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	95.02
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	94.23
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	93.61
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	93.24
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	93.14
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	86.53
d2ebsa1	427	Oligoxyloglucan reducing end-specific cellobiohydr	82.36
d1tl2a_	235	Tachylectin-2 {Japanese horseshoe crab (Tachypleus	81.39
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	80.82
d2ebsa1	427	Oligoxyloglucan reducing end-specific cellobiohydr	80.37
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	80.27

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=3e-44  Score=272.85  Aligned_cols=232  Identities=56%  Similarity=1.099  Sum_probs=205.3

Q ss_pred             eEEeCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEe
Q psy11529          4 VYSFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWT   83 (244)
Q Consensus         4 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd   83 (244)
                      .|.+..+||+|++|+|||++||+|+.|+.|+||++++  +++..+..+++|.++|++++|+|++++|++++.|+.|++||
T Consensus         2 ~~~~~~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~--~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd   79 (371)
T d1k8kc_           2 YHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSG--NKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWT   79 (371)
T ss_dssp             EEESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEET--TEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred             cCCCCCCCeEEEEECCCCCEEEEEeCCCEEEEEECCC--CCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEe
Confidence            5788899999999999999999999999999999987  65678888999999999999999999999999999999999


Q ss_pred             eeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEE
Q psy11529         84 QNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLG  163 (244)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~  163 (244)
                        +.++..........+...+.+++|+|+++.|++++.|+.+++|+++..............|...|.+++|+|++++|+
T Consensus        80 --~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~  157 (371)
T d1k8kc_          80 --LKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLA  157 (371)
T ss_dssp             --EETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEE
T ss_pred             --ecccccccccccccccccccccccccccccceeecccCcceeeeeeccccccccccccccccccccccccccccccee
Confidence              666666666666778899999999999999999999999999999988876666667778889999999999999999


Q ss_pred             EeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCCC
Q psy11529        164 CGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQV  242 (244)
Q Consensus       164 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~  242 (244)
                      +|+.|+.|++||+.............+......++.+.....|   ...|.+++|+|+|++|++++.|+.|++||+++.
T Consensus       158 s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~  233 (371)
T d1k8kc_         158 AGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSS---CGWVHGVCFSANGSRVAWVSHDSTVCLADADKK  233 (371)
T ss_dssp             EEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCC---SSCEEEEEECSSSSEEEEEETTTEEEEEEGGGT
T ss_pred             ccccCcEEEEEeeccCccccccccccccccccceeeeeeccCc---cCcEEEEEeecccccccccccCCcceEEeeecc
Confidence            9999999999999776655555555555555667788888888   899999999999999999999999999998764

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.4e-39  Score=241.31  Aligned_cols=208  Identities=15%  Similarity=0.178  Sum_probs=176.4

Q ss_pred             eEEeCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeC--CccEEE
Q psy11529          4 VYSFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSA--DRNAYV   81 (244)
Q Consensus         4 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~i   81 (244)
                      ++..|.+.|++++|+|+|++||+|+.||.|+||++..  +.......+..|..+|.+++|+|++++|++++.  +..+++
T Consensus        53 ~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~--~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v  130 (311)
T d1nr0a1          53 IYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQ--TTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHV  130 (311)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSS--TTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEE
T ss_pred             EEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeec--cccccccccccccCccccccccccccccccccccccccccc
Confidence            4556789999999999999999999999999999987  433445668889999999999999999998875  466999


Q ss_pred             EeeeCCCCCceeeEEEeccCcceEEEEECCCCCe-EEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCC
Q psy11529         82 WTQNNDDKKWKPTLVLLRINRAATCVKWSPLENK-FAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNH  160 (244)
Q Consensus        82 wd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~  160 (244)
                      |+  .++++...  .+..|...|.+++|+|++++ |++|+.|+.|++||+++.+.    ......|...|+++.|+|+++
T Consensus       131 ~~--~~~~~~~~--~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~----~~~~~~~~~~i~~v~~~p~~~  202 (311)
T d1nr0a1         131 FL--FDTGTSNG--NLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKF----KSTFGEHTKFVHSVRYNPDGS  202 (311)
T ss_dssp             EE--TTTCCBCB--CCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEE----EEEECCCSSCEEEEEECTTSS
T ss_pred             cc--cccccccc--cccccccccccccccccceeeeccccccccccccccccccc----ccccccccccccccccCcccc
Confidence            99  67766443  34678889999999999885 78899999999999988753    556677889999999999999


Q ss_pred             EEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEe-------cCCCCCCCCeEEEEEecCCCEEEEeeCCCc
Q psy11529        161 LLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVEL-------NNSSSGGGWIHSVAFSKDGNKLCWTSHDGS  233 (244)
Q Consensus       161 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~  233 (244)
                      ++++++.|+.|++||++                  .+.....+       .+|   ...|++++|+|++++|++|+.||.
T Consensus       203 ~l~~~~~d~~v~~~d~~------------------~~~~~~~~~~~~~~~~~h---~~~V~~~~~s~~~~~l~tgs~Dg~  261 (311)
T d1nr0a1         203 LFASTGGDGTIVLYNGV------------------DGTKTGVFEDDSLKNVAH---SGSVFGLTWSPDGTKIASASADKT  261 (311)
T ss_dssp             EEEEEETTSCEEEEETT------------------TCCEEEECBCTTSSSCSS---SSCEEEEEECTTSSEEEEEETTSE
T ss_pred             ccccccccccccccccc------------------cccccccccccccccccc---cccccccccCCCCCEEEEEeCCCe
Confidence            99999999999999983                  34443333       245   788999999999999999999999


Q ss_pred             EEEEeCCCC
Q psy11529        234 INVRMSQQV  242 (244)
Q Consensus       234 i~vwd~~~~  242 (244)
                      |+|||+++.
T Consensus       262 v~iwd~~t~  270 (311)
T d1nr0a1         262 IKIWNVATL  270 (311)
T ss_dssp             EEEEETTTT
T ss_pred             EEEEECCCC
Confidence            999998864

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.2e-39  Score=243.51  Aligned_cols=206  Identities=14%  Similarity=0.202  Sum_probs=176.5

Q ss_pred             EeCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeee
Q psy11529          6 SFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQN   85 (244)
Q Consensus         6 ~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~   85 (244)
                      ..|.++|++++|+|++++||+|+.||.|+|||+.+  +  +.+..+..|...|.+++|+|++.++++++.|+.+.+|+..
T Consensus        52 ~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~--~--~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~  127 (340)
T d1tbga_          52 RGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYT--T--NKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLK  127 (340)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTT--T--EEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEESS
T ss_pred             CCCCCCEEEEEECCCCCEEEEEECCCceeeeeccc--c--eeEEEEecccccEEeeEeeccceeeeeecccceeeccccc
Confidence            34799999999999999999999999999999977  5  7788899999999999999999999999999999999842


Q ss_pred             CCC-----------------------------------------------------------------------------
Q psy11529         86 NDD-----------------------------------------------------------------------------   88 (244)
Q Consensus        86 ~~~-----------------------------------------------------------------------------   88 (244)
                      ...                                                                             
T Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  207 (340)
T d1tbga_         128 TREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDAS  207 (340)
T ss_dssp             SSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTTE
T ss_pred             ccccccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeeccccccceeEEeecCce
Confidence            000                                                                             


Q ss_pred             ------CCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEE
Q psy11529         89 ------KKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLL  162 (244)
Q Consensus        89 ------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l  162 (244)
                            ........+..|...|.+++|+|++++|++++.|+.+++|+++....  ........+...+.+++|+|++++|
T Consensus       208 v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~--~~~~~~~~~~~~i~~~~~s~~~~~l  285 (340)
T d1tbga_         208 AKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQE--LMTYSHDNIICGITSVSFSKSGRLL  285 (340)
T ss_dssp             EEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE--EEEECCTTCCSCEEEEEECSSSCEE
T ss_pred             EEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeeccccc--ccccccccccCceEEEEECCCCCEE
Confidence                  00001123345778899999999999999999999999999988764  2222334556789999999999999


Q ss_pred             EEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEe
Q psy11529        163 GCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRM  238 (244)
Q Consensus       163 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd  238 (244)
                      ++|+.||.|++||+                  ..++++..+.+|   ..+|++++|+|++++|++|+.||.|+|||
T Consensus       286 ~~g~~dg~i~iwd~------------------~~~~~~~~~~~H---~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         286 LAGYDDFNCNVWDA------------------LKADRAGVLAGH---DNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             EEEETTSCEEEEET------------------TTCCEEEEECCC---SSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             EEEECCCEEEEEEC------------------CCCcEEEEEcCC---CCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence            99999999999998                  678899999999   89999999999999999999999999997

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=8.5e-37  Score=225.36  Aligned_cols=205  Identities=17%  Similarity=0.192  Sum_probs=166.1

Q ss_pred             EEeCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCC-------------------
Q psy11529          5 YSFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAP-------------------   65 (244)
Q Consensus         5 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-------------------   65 (244)
                      ..-|.++|++++|+|++++|++|+.||.|+|||+.+  +  +.+.++.+|...|.+++|+|                   
T Consensus        13 L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~--~--~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (317)
T d1vyhc1          13 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYET--G--DFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDF   88 (317)
T ss_dssp             EECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTT--C--CCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEET
T ss_pred             EcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC--C--CEEEEEeCCCCcEEEEeeecccccccccccccccccccc
Confidence            345899999999999999999999999999999876  3  45555555555555555554                   


Q ss_pred             -----------------------CCCeEEEEeCCccEEEEeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCC
Q psy11529         66 -----------------------NTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGA  122 (244)
Q Consensus        66 -----------------------~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  122 (244)
                                             +++.+++++.|+.+++||  ..++...  ..+..+...+.+++|+|++++|++++.|
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~d  164 (317)
T d1vyhc1          89 QGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWE--VQTGYCV--KTFTGHREWVRMVRPNQDGTLIASCSND  164 (317)
T ss_dssp             TSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEE--TTTCCEE--EEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred             cccccccccccccccceeeeccCCCceEEeeccCcceeEee--cccceee--eEEccCCCcceeeecccCCCEEEEEeCC
Confidence                                   455566777788888888  6666543  3445788899999999999999999999


Q ss_pred             CeEEEEEeecCCCce----------------------------------------------------------EEEeeec
Q psy11529        123 RLISVCYFESENDWW----------------------------------------------------------VAKHIKK  144 (244)
Q Consensus       123 ~~i~i~d~~~~~~~~----------------------------------------------------------~~~~~~~  144 (244)
                      +.+++|+++......                                                          .......
T Consensus       165 ~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~  244 (317)
T d1vyhc1         165 QTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLV  244 (317)
T ss_dssp             SCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred             CeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEe
Confidence            999999976543210                                                          0112233


Q ss_pred             CCCCceeEEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCE
Q psy11529        145 PIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNK  224 (244)
Q Consensus       145 ~~~~~v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~  224 (244)
                      .|...|.+++|+|++++|++++.||.|++||+                  .+++++..+.+|   ...|++++|+|++++
T Consensus       245 ~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~------------------~~~~~~~~~~~h---~~~V~~~~~s~~~~~  303 (317)
T d1vyhc1         245 GHDNWVRGVLFHSGGKFILSCADDKTLRVWDY------------------KNKRCMKTLNAH---EHFVTSLDFHKTAPY  303 (317)
T ss_dssp             CCSSCEEEEEECSSSSCEEEEETTTEEEEECC------------------TTSCCCEEEECC---SSCEEEEEECSSSSC
T ss_pred             CCCCCEEEEEECCCCCEEEEEECCCeEEEEEC------------------CCCcEEEEEcCC---CCCEEEEEEcCCCCE
Confidence            46678999999999999999999999999999                  678889999999   899999999999999


Q ss_pred             EEEeeCCCcEEEEe
Q psy11529        225 LCWTSHDGSINVRM  238 (244)
Q Consensus       225 l~~~~~dg~i~vwd  238 (244)
                      |++|+.||+|+|||
T Consensus       304 l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         304 VVTGSVDQTVKVWE  317 (317)
T ss_dssp             EEEEETTSEEEEEC
T ss_pred             EEEEeCCCeEEEeC
Confidence            99999999999997

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.2e-36  Score=230.84  Aligned_cols=211  Identities=14%  Similarity=0.118  Sum_probs=174.5

Q ss_pred             EeCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeee
Q psy11529          6 SFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQN   85 (244)
Q Consensus         6 ~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~   85 (244)
                      ..|.++|++++|+|++++|++++.|+.|+||++.+  +.......+.+|...|.+++|+|+++.|++++.|+.+++|+++
T Consensus        48 ~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~--~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~  125 (371)
T d1k8kc_          48 KEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKG--RTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFE  125 (371)
T ss_dssp             ECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEET--TEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEE
T ss_pred             cCCCCCEEEEEECCCCCEEEEEECCCeEEEEeecc--cccccccccccccccccccccccccccceeecccCcceeeeee
Confidence            34789999999999999999999999999999987  5456667778899999999999999999999999999999953


Q ss_pred             CCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCc--------------eEEEeeecCCCCcee
Q psy11529         86 NDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDW--------------WVAKHIKKPIKSTIT  151 (244)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~--------------~~~~~~~~~~~~~v~  151 (244)
                      ..............+...|.+++|+|++++|++++.|+.+++|+.......              .........|...+.
T Consensus       126 ~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  205 (371)
T d1k8kc_         126 QENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVH  205 (371)
T ss_dssp             TTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEE
T ss_pred             cccccccccccccccccccccccccccccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEE
Confidence            222222223333457889999999999999999999999999998654321              112334456778899


Q ss_pred             EEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCC
Q psy11529        152 CLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHD  231 (244)
Q Consensus       152 ~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d  231 (244)
                      +++|+|++++|++++.|+.|++||+                  ..++.+..+..|   ..+|.+++|+|++++|++| .|
T Consensus       206 ~~~~s~~g~~l~s~~~d~~i~iwd~------------------~~~~~~~~~~~~---~~~v~s~~fs~d~~~la~g-~d  263 (371)
T d1k8kc_         206 GVCFSANGSRVAWVSHDSTVCLADA------------------DKKMAVATLASE---TLPLLAVTFITESSLVAAG-HD  263 (371)
T ss_dssp             EEEECSSSSEEEEEETTTEEEEEEG------------------GGTTEEEEEECS---SCCEEEEEEEETTEEEEEE-TT
T ss_pred             EEEeecccccccccccCCcceEEee------------------ecccceeeeecc---cccceeeeecCCCCEEEEE-cC
Confidence            9999999999999999999999999                  667888889888   8899999999999888765 47


Q ss_pred             CcEEEEeCC
Q psy11529        232 GSINVRMSQ  240 (244)
Q Consensus       232 g~i~vwd~~  240 (244)
                      +.+++|..+
T Consensus       264 ~~~~~~~~~  272 (371)
T d1k8kc_         264 CFPVLFTYD  272 (371)
T ss_dssp             SSCEEEEEE
T ss_pred             CceEEEEee
Confidence            777776654

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=7.5e-37  Score=226.55  Aligned_cols=202  Identities=14%  Similarity=0.209  Sum_probs=176.1

Q ss_pred             CCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCCC
Q psy11529          9 INPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDD   88 (244)
Q Consensus         9 ~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~   88 (244)
                      ++.+..++++|+|+.|++++ ++.|.+|++..  .  .....+.+|...|++++|+|+|++|++|+.|++|++||  +.+
T Consensus        17 r~~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~--~--~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd--~~~   89 (311)
T d1nr0a1          17 RGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGS--L--TDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWD--TTQ   89 (311)
T ss_dssp             TTCCCCCEECTTSSEEEEEE-TTEEEEEETTC--S--SCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEE--SSS
T ss_pred             CCCeEEEEEcCCCCEEEEEe-CCEEEEEECCC--C--ceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeee--eec
Confidence            45667899999999999986 57899999977  4  56667889999999999999999999999999999999  667


Q ss_pred             CCceeeEEEeccCcceEEEEECCCCCeEEEeeC--CCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCE-EEEe
Q psy11529         89 KKWKPTLVLLRINRAATCVKWSPLENKFAAGSG--ARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHL-LGCG  165 (244)
Q Consensus        89 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~-l~~~  165 (244)
                      +.......+..|...|.+++|+|++++|++++.  +..+++|++++.+.    ......|...|++++|+|++++ |++|
T Consensus        90 ~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~----~~~l~~h~~~v~~v~~~~~~~~~l~sg  165 (311)
T d1nr0a1          90 TTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTS----NGNLTGQARAMNSVDFKPSRPFRIISG  165 (311)
T ss_dssp             TTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCB----CBCCCCCSSCEEEEEECSSSSCEEEEE
T ss_pred             cccccccccccccCccccccccccccccccccccccccccccccccccc----cccccccccccccccccccceeeeccc
Confidence            665555566788999999999999999999876  45699999998765    3455678889999999999985 8889


Q ss_pred             eCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCCC
Q psy11529        166 STDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQV  242 (244)
Q Consensus       166 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~  242 (244)
                      +.||.|++||+                  ..++....+..|   ...|.++.|+|++++|++++.|+.|++||+++.
T Consensus       166 s~d~~i~i~d~------------------~~~~~~~~~~~~---~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~  221 (311)
T d1nr0a1         166 SDDNTVAIFEG------------------PPFKFKSTFGEH---TKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDG  221 (311)
T ss_dssp             ETTSCEEEEET------------------TTBEEEEEECCC---SSCEEEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred             ccccccccccc------------------cccccccccccc---cccccccccCccccccccccccccccccccccc
Confidence            99999999999                  667888888888   899999999999999999999999999998753

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.2e-36  Score=224.02  Aligned_cols=210  Identities=13%  Similarity=0.096  Sum_probs=176.9

Q ss_pred             eEEe-CCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCC-cceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEE
Q psy11529          4 VYSF-GINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAAN-DWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYV   81 (244)
Q Consensus         4 ~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i   81 (244)
                      ++.+ |..+|.+++|+|+|++|++|+ ||.|+|||+..... .........+|.+.|.+++|+|++++|++++.|+.|++
T Consensus        45 ~~~~~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~i  123 (337)
T d1gxra_          45 INTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSI  123 (337)
T ss_dssp             EEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEE
T ss_pred             EEECCCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeeccccccc
Confidence            3443 689999999999999999987 79999999865221 11223344578999999999999999999999999999


Q ss_pred             EeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCE
Q psy11529         82 WTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHL  161 (244)
Q Consensus        82 wd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~  161 (244)
                      ||  +..........+..|...+.+++|+|++.++++++.++.+++|++++.+.    ......|...+.+++|+|+++.
T Consensus       124 wd--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~----~~~~~~~~~~v~~l~~s~~~~~  197 (337)
T d1gxra_         124 WD--LAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTL----VRQFQGHTDGASCIDISNDGTK  197 (337)
T ss_dssp             EE--CCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE----EEEECCCSSCEEEEEECTTSSE
T ss_pred             cc--cccccccccccccccccccccccccccccccccccccccccccccccccc----cccccccccccccccccccccc
Confidence            99  56555445556677888999999999999999999999999999988753    4556678889999999999999


Q ss_pred             EEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCC
Q psy11529        162 LGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQ  241 (244)
Q Consensus       162 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~  241 (244)
                      +++++.|+.+++||+                  ..++.+..+. +   ...|.+++|+|++++|++++.|+.+++||+++
T Consensus       198 ~~~~~~d~~v~i~d~------------------~~~~~~~~~~-~---~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~  255 (337)
T d1gxra_         198 LWTGGLDNTVRSWDL------------------REGRQLQQHD-F---TSQIFSLGYCPTGEWLAVGMESSNVEVLHVNK  255 (337)
T ss_dssp             EEEEETTSEEEEEET------------------TTTEEEEEEE-C---SSCEEEEEECTTSSEEEEEETTSCEEEEETTS
T ss_pred             ccccccccccccccc------------------ccceeecccc-c---ccceEEEEEcccccccceeccccccccccccc
Confidence            999999999999998                  5666666665 3   78899999999999999999999999999875


Q ss_pred             C
Q psy11529        242 V  242 (244)
Q Consensus       242 ~  242 (244)
                      .
T Consensus       256 ~  256 (337)
T d1gxra_         256 P  256 (337)
T ss_dssp             S
T ss_pred             c
Confidence            3

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1e-35  Score=222.77  Aligned_cols=198  Identities=12%  Similarity=0.122  Sum_probs=176.3

Q ss_pred             EeCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeee
Q psy11529          6 SFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQN   85 (244)
Q Consensus         6 ~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~   85 (244)
                      ..+...|.+++|+|++.++++++.++.|++|++.+  +  +......+|...|.+++|++++..+++++.|+.+++||  
T Consensus       138 ~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~--~--~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d--  211 (337)
T d1gxra_         138 TSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHN--Q--TLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWD--  211 (337)
T ss_dssp             ECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTT--T--EEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEE--
T ss_pred             ccccccccccccccccccccccccccccccccccc--c--cccccccccccccccccccccccccccccccccccccc--
Confidence            34578899999999999999999999999999987  4  67778888999999999999999999999999999999  


Q ss_pred             CCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEe
Q psy11529         86 NDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCG  165 (244)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~  165 (244)
                      +++++.   .....+...+.+++|+|++++|++++.|+.+++||++....     .....|...|++++|+|++++|+++
T Consensus       212 ~~~~~~---~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~-----~~~~~~~~~i~~v~~s~~g~~l~s~  283 (337)
T d1gxra_         212 LREGRQ---LQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK-----YQLHLHESCVLSLKFAYCGKWFVST  283 (337)
T ss_dssp             TTTTEE---EEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCE-----EEECCCSSCEEEEEECTTSSEEEEE
T ss_pred             ccccee---ecccccccceEEEEEcccccccceecccccccccccccccc-----ccccccccccceEEECCCCCEEEEE
Confidence            777763   33346788999999999999999999999999999988764     3456778899999999999999999


Q ss_pred             eCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeC
Q psy11529        166 STDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMS  239 (244)
Q Consensus       166 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~  239 (244)
                      +.||.|++||+                  ..++.+..+. |   ...|.+++|+|++++|++|+.||+|+|||+
T Consensus       284 s~Dg~i~iwd~------------------~~~~~~~~~~-~---~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         284 GKDNLLNAWRT------------------PYGASIFQSK-E---SSSVLSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             ETTSEEEEEET------------------TTCCEEEEEE-C---SSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             eCCCeEEEEEC------------------CCCCEEEEcc-C---CCCEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence            99999999998                  6677776655 4   788999999999999999999999999996

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=2.1e-35  Score=217.38  Aligned_cols=212  Identities=17%  Similarity=0.098  Sum_probs=166.4

Q ss_pred             eeEEeCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeee-ccCCCceEEEEeCCCCCeEEEEeCCccEEE
Q psy11529          3 EVYSFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVL-DGHDLKVTGIDWAPNTNRIVTCSADRNAYV   81 (244)
Q Consensus         3 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i   81 (244)
                      .+.+-|.++|++++|+|++++|++|+.||.|++||+++  +  +....+ .+|...|++++|+|++++ ++++.|+.+++
T Consensus         6 ~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~--~--~~~~~~~~~h~~~v~~v~~~~~g~~-~~~~~d~~v~~   80 (299)
T d1nr0a2           6 QVRYGHNKAITALSSSADGKTLFSADAEGHINSWDIST--G--ISNRVFPDVHATMITGIKTTSKGDL-FTVSWDDHLKV   80 (299)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT--C--CEEECSSCSCSSCEEEEEECTTSCE-EEEETTTEEEE
T ss_pred             eEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCC--C--cEEEEEcCCCCCcEEEEEeecccee-ecccceeeEEE
Confidence            34566899999999999999999999999999999977  4  455555 468999999999999875 55667999999


Q ss_pred             EeeeCCCCCce---e----------eE-------------------------EEeccCcceEEEEECCCCCeEEEeeCCC
Q psy11529         82 WTQNNDDKKWK---P----------TL-------------------------VLLRINRAATCVKWSPLENKFAAGSGAR  123 (244)
Q Consensus        82 wd~~~~~~~~~---~----------~~-------------------------~~~~~~~~v~~~~~~~~~~~l~~~~~d~  123 (244)
                      |++  ......   .          ..                         ........+.+++|+|++++|++++.|+
T Consensus        81 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg  158 (299)
T d1nr0a2          81 VPA--GGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDS  158 (299)
T ss_dssp             ECS--SSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTS
T ss_pred             ecc--CCccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            994  221100   0          00                         0011234577899999999999999999


Q ss_pred             eEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEe
Q psy11529        124 LISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVEL  203 (244)
Q Consensus       124 ~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (244)
                      .+++||++....   .......|...|++++|+|++++|++++.|+.|++||+.....               ......+
T Consensus       159 ~i~~~d~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~---------------~~~~~~~  220 (299)
T d1nr0a2         159 KVHVYKLSGASV---SEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFE---------------LAHTNSW  220 (299)
T ss_dssp             EEEEEEEETTEE---EEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTE---------------ESCCCCC
T ss_pred             cccccccccccc---ccccccccccccccccccccccccccccccccccccccccccc---------------ccccccc
Confidence            999999988753   2333445778999999999999999999999999999842211               1122345


Q ss_pred             cCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCCC
Q psy11529        204 NNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQV  242 (244)
Q Consensus       204 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~  242 (244)
                      ..|   ...|++++|+|++++|++|+.||.|++||+++.
T Consensus       221 ~~h---~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~  256 (299)
T d1nr0a2         221 TFH---TAKVACVSWSPDNVRLATGSLDNSVIVWNMNKP  256 (299)
T ss_dssp             CCC---SSCEEEEEECTTSSEEEEEETTSCEEEEETTCT
T ss_pred             ccc---ccccccccccccccceEEEcCCCEEEEEECCCC
Confidence            566   889999999999999999999999999998763

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.9e-35  Score=224.93  Aligned_cols=210  Identities=17%  Similarity=0.213  Sum_probs=166.6

Q ss_pred             CCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeee--
Q psy11529          8 GINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQN--   85 (244)
Q Consensus         8 ~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~--   85 (244)
                      +...|++++|+|++++|++|+.||.|++|+...  +  +....+.+|...|.+++|++++..+++++.++.+++||+.  
T Consensus       120 ~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~--~--~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~  195 (388)
T d1erja_         120 SDLYIRSVCFSPDGKFLATGAEDRLIRIWDIEN--R--KIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTG  195 (388)
T ss_dssp             CCCBEEEEEECTTSSEEEEEETTSCEEEEETTT--T--EEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT
T ss_pred             CCCCEEEEEECCCCCcceecccccccccccccc--c--ccccccccccccccccccccccccccccccceeeeeeecccc
Confidence            467799999999999999999999999999877  4  6777788888889888888887777777777777777731  


Q ss_pred             --------------------------------------CCCCCceeeE-----EEeccCcceEEEEECCCCCeEEEeeCC
Q psy11529         86 --------------------------------------NDDKKWKPTL-----VLLRINRAATCVKWSPLENKFAAGSGA  122 (244)
Q Consensus        86 --------------------------------------~~~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~l~~~~~d  122 (244)
                                                            ..++.....+     ....|...|.+++|+|++++|++++.|
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d  275 (388)
T d1erja_         196 QCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLD  275 (388)
T ss_dssp             EEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             ccccccccccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECC
Confidence                                                  1111111111     112356789999999999999999999


Q ss_pred             CeEEEEEeecCCCce--------EEEeeecCCCCceeEEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccc
Q psy11529        123 RLISVCYFESENDWW--------VAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKS  194 (244)
Q Consensus       123 ~~i~i~d~~~~~~~~--------~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  194 (244)
                      +.|++||++......        ........|...|.+++|+|++++|++|+.||.|++||+                  
T Consensus       276 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~------------------  337 (388)
T d1erja_         276 RSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDK------------------  337 (388)
T ss_dssp             SEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEET------------------
T ss_pred             CcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEEC------------------
Confidence            999999998765311        122334557789999999999999999999999999999                  


Q ss_pred             cccceeEEecCCCCCCCCeEEEEE------ecCCCEEEEeeCCCcEEEEeCCCC
Q psy11529        195 TLGNCLVELNNSSSGGGWIHSVAF------SKDGNKLCWTSHDGSINVRMSQQV  242 (244)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~v~~~~~------s~~~~~l~~~~~dg~i~vwd~~~~  242 (244)
                      .+++++..+.+|   ...|.++++      +|++.+|++|+.||+|+||+++++
T Consensus       338 ~~~~~~~~l~~H---~~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~k~  388 (388)
T d1erja_         338 KSGNPLLMLQGH---RNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI  388 (388)
T ss_dssp             TTCCEEEEEECC---SSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred             CCCcEEEEEeCC---CCCEEEEEEecCcccCCCCCEEEEEeCCCEEEEEeeeeC
Confidence            778999999999   899999875      578999999999999999999764

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.6e-35  Score=224.17  Aligned_cols=218  Identities=17%  Similarity=0.237  Sum_probs=156.9

Q ss_pred             CCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeee------------------ccCCCceEEEEeCCCCCe
Q psy11529          8 GINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVL------------------DGHDLKVTGIDWAPNTNR   69 (244)
Q Consensus         8 ~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~------------------~~~~~~v~~~~~~~~~~~   69 (244)
                      |.+.|+|++|+|||++||+|+ |+.|+||++.+  +  +.+..+                  ..|...|.+++|+|++++
T Consensus        61 H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~  135 (388)
T d1erja_          61 HTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSD--G--SLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKF  135 (388)
T ss_dssp             CSSCCCEEEECTTSSEEEEEC-BSCEEEEETTT--C--CEEEEECC-----------------CCCCBEEEEEECTTSSE
T ss_pred             CCCcEEEEEECCCCCEEEEEe-CCeEEEEEecc--c--ceEeeecccccccccccccccccccCCCCCEEEEEECCCCCc
Confidence            789999999999999999986 89999999876  3  233222                  346778999999999999


Q ss_pred             EEEEeCCccEEEEeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeec-----------------
Q psy11529         70 IVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFES-----------------  132 (244)
Q Consensus        70 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~-----------------  132 (244)
                      |++|+.|+.|++||  ...++.  .....+|...|.+++|++++..+++++.++.+++||.+.                 
T Consensus       136 l~s~~~dg~v~i~~--~~~~~~--~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~  211 (388)
T d1erja_         136 LATGAEDRLIRIWD--IENRKI--VMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVA  211 (388)
T ss_dssp             EEEEETTSCEEEEE--TTTTEE--EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEE
T ss_pred             ceeccccccccccc--cccccc--ccccccccccccccccccccccccccccceeeeeeecccccccccccccccccccc
Confidence            99999999999999  666553  233355667777777777766666666666666666543                 


Q ss_pred             -------------------------CCCceEE---EeeecCCCCceeEEEecCCCCEEEEeeCCCeEEEEEeeecccccC
Q psy11529        133 -------------------------ENDWWVA---KHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESA  184 (244)
Q Consensus       133 -------------------------~~~~~~~---~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~  184 (244)
                                               .......   ......|...|.+++|+|++++|++++.||.|++||++.......
T Consensus       212 ~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~  291 (388)
T d1erja_         212 VSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSD  291 (388)
T ss_dssp             ECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC--------
T ss_pred             ccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccccc
Confidence                                     2211000   011224567899999999999999999999999999865433211


Q ss_pred             CCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCCCC
Q psy11529        185 PQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQVL  243 (244)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~  243 (244)
                      ....      ...........|   ...|.+++|+|++++|++|+.||.|++||+++..
T Consensus       292 ~~~~------~~~~~~~~~~~~---~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~  341 (388)
T d1erja_         292 SKTP------NSGTCEVTYIGH---KDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGN  341 (388)
T ss_dssp             -------------CEEEEEECC---SSCEEEEEECGGGCEEEEEETTSEEEEEETTTCC
T ss_pred             cccc------cccceeeecccc---cceEEEEEECCCCCEEEEEeCCCEEEEEECCCCc
Confidence            1100      223445566667   8899999999999999999999999999998653

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=9.2e-33  Score=205.71  Aligned_cols=208  Identities=12%  Similarity=0.076  Sum_probs=165.2

Q ss_pred             CCceEEEEEcC--CCCeEEEecCCCeEEEeeeccCCCc----ceeeeeeccCCCceEEEEeCCCCCeEEEEeC--CccEE
Q psy11529          9 INPVTTHAWNN--TRQQLAFTPNNQEVHLYQYEKAAND----WSQLDVLDGHDLKVTGIDWAPNTNRIVTCSA--DRNAY   80 (244)
Q Consensus         9 ~~~v~~~~~~~--~~~~l~~~~~d~~v~v~~~~~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~   80 (244)
                      ...|++++|+|  ++++|++|+.||+|+|||+......    ......+..|.++|.+++|+++++++++++.  ++.+.
T Consensus        63 ~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~  142 (325)
T d1pgua1          63 SSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGV  142 (325)
T ss_dssp             TSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEE
T ss_pred             CCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEE
Confidence            56899999998  5689999999999999998651110    0112335568899999999999999887754  67899


Q ss_pred             EEeeeCCCCCceeeEEEeccCcceEEEEECCCCCe-EEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCC-
Q psy11529         81 VWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENK-FAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPN-  158 (244)
Q Consensus        81 iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~-  158 (244)
                      +|+  ..+++.  ...+.+|...+.+++|+|++.+ +++++.|+.+++||....+. .........+...|.+++|+|+ 
T Consensus       143 ~~~--~~~~~~--~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~-~~~~~~~~~~~~~v~~v~~~pd~  217 (325)
T d1pgua1         143 FIS--WDSGNS--LGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKF-SASDRTHHKQGSFVRDVEFSPDS  217 (325)
T ss_dssp             EEE--TTTCCE--EEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEE-EEEECSSSCTTCCEEEEEECSTT
T ss_pred             EEe--eccccc--ceeeeecccccccccccccccceEEEeeccccccccccccccc-ceecccccCCCCccEEeeecccc
Confidence            999  777663  3344678999999999999775 67789999999999876643 1112223456778999999996 


Q ss_pred             CCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEe---cCCCEEEEeeCCCcEE
Q psy11529        159 NHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFS---KDGNKLCWTSHDGSIN  235 (244)
Q Consensus       159 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s---~~~~~l~~~~~dg~i~  235 (244)
                      +.+|++++.||.|++||+                  .+++.+..+.+|   ..++..+.|+   |+|++|++++.|+.|+
T Consensus       218 ~~~l~s~~~d~~i~iwd~------------------~~~~~~~~l~~~---~~~v~~~~~s~~~~dg~~l~s~s~D~~i~  276 (325)
T d1pgua1         218 GEFVITVGSDRKISCFDG------------------KSGEFLKYIEDD---QEPVQGGIFALSWLDSQKFATVGADATIR  276 (325)
T ss_dssp             CCEEEEEETTCCEEEEET------------------TTCCEEEECCBT---TBCCCSCEEEEEESSSSEEEEEETTSEEE
T ss_pred             ceeccccccccceeeeee------------------cccccccccccc---ccccccceeeeeccCCCEEEEEeCCCeEE
Confidence            579999999999999998                  678888888887   6666666665   6899999999999999


Q ss_pred             EEeCCCC
Q psy11529        236 VRMSQQV  242 (244)
Q Consensus       236 vwd~~~~  242 (244)
                      |||+++.
T Consensus       277 iwd~~~~  283 (325)
T d1pgua1         277 VWDVTTS  283 (325)
T ss_dssp             EEETTTT
T ss_pred             EEECCCC
Confidence            9999853

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.2e-31  Score=198.18  Aligned_cols=205  Identities=13%  Similarity=0.135  Sum_probs=159.3

Q ss_pred             EeCCCceEEEEEcCCCCeEEEecC--CCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCe-EEEEeCCccEEEE
Q psy11529          6 SFGINPVTTHAWNNTRQQLAFTPN--NQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNR-IVTCSADRNAYVW   82 (244)
Q Consensus         6 ~~~~~~v~~~~~~~~~~~l~~~~~--d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~iw   82 (244)
                      ..+.++|.+++|++++++|++++.  ++.+.+|+.+.  +  +.+..+.+|...|.+++|+|++.+ +++++.|+.+++|
T Consensus       112 ~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~--~--~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~  187 (325)
T d1pgua1         112 QVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDS--G--NSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFY  187 (325)
T ss_dssp             ECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTT--C--CEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEE
T ss_pred             ccccCcEEEEEECCCCCccceeeccccceEEEEeecc--c--ccceeeeecccccccccccccccceEEEeecccccccc
Confidence            446789999999999999887754  67899999876  4  678888999999999999998775 6788999999999


Q ss_pred             eeeCCCCCceeeEE-EeccCcceEEEEECCC-CCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEec---C
Q psy11529         83 TQNNDDKKWKPTLV-LLRINRAATCVKWSPL-ENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWH---P  157 (244)
Q Consensus        83 d~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~---p  157 (244)
                      |  ....+...... ...+...|.+++|+|+ +.++++++.|+.|++||+++++.    ......|...+..+.|+   |
T Consensus       188 d--~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~----~~~l~~~~~~v~~~~~s~~~~  261 (325)
T d1pgua1         188 Q--GPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEF----LKYIEDDQEPVQGGIFALSWL  261 (325)
T ss_dssp             E--TTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCE----EEECCBTTBCCCSCEEEEEES
T ss_pred             c--ccccccceecccccCCCCccEEeeeccccceeccccccccceeeeeeccccc----cccccccccccccceeeeecc
Confidence            9  66554332221 2345677999999997 68899999999999999988764    34445566666655555   6


Q ss_pred             CCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecC-CCEEEEeeCCCcEEE
Q psy11529        158 NNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKD-GNKLCWTSHDGSINV  236 (244)
Q Consensus       158 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~v  236 (244)
                      ++++|++++.|+.|+|||+                  .+++++..+..|.. ...+..+++.+. +.+|++++.||+|++
T Consensus       262 dg~~l~s~s~D~~i~iwd~------------------~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~s~s~dg~i~v  322 (325)
T d1pgua1         262 DSQKFATVGADATIRVWDV------------------TTSKCVQKWTLDKQ-QLGNQQVGVVATGNGRIISLSLDGTLNF  322 (325)
T ss_dssp             SSSEEEEEETTSEEEEEET------------------TTTEEEEEEECCTT-CGGGCEEEEEEEETTEEEEEETTSCEEE
T ss_pred             CCCEEEEEeCCCeEEEEEC------------------CCCCEEEEEEecCC-cccCeEEEEEECCCCEEEEEECCCEEEE
Confidence            8999999999999999999                  66788887766510 223344444432 347889999999999


Q ss_pred             EeC
Q psy11529        237 RMS  239 (244)
Q Consensus       237 wd~  239 (244)
                      ||+
T Consensus       323 wdl  325 (325)
T d1pgua1         323 YEL  325 (325)
T ss_dssp             EET
T ss_pred             EEC
Confidence            996

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=5.9e-32  Score=197.72  Aligned_cols=198  Identities=16%  Similarity=0.121  Sum_probs=150.7

Q ss_pred             eEEeCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEe
Q psy11529          4 VYSFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWT   83 (244)
Q Consensus         4 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd   83 (244)
                      ..+.|.++|++++|+|    |++|+.||.|++||+.+  .       ..+|...|.+++++++ ..+++++.|+++++|+
T Consensus         8 ~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~--~-------~~~h~~~V~~~~~~~~-~~~~s~s~D~~v~~w~   73 (287)
T d1pgua2           8 TISGHNKGITALTVNP----LISGSYDGRIMEWSSSS--M-------HQDHSNLIVSLDNSKA-QEYSSISWDDTLKVNG   73 (287)
T ss_dssp             EECCCSSCEEEEETTT----TEEEETTSCEEETTTTE--E-------ECCCCSCEEEEECCST-TCCEEEETTTEEEETT
T ss_pred             EECCCCCceEEEEECc----EEEEeCCCeEEEEECCC--C-------CCCCCCCEEEEEecCC-CeEEEEeecccccccc
Confidence            3455789999999987    88999999999998865  1       2457777888887764 3467777777777776


Q ss_pred             eeC--------------------------------CCCCc-----------------------------e---------e
Q psy11529         84 QNN--------------------------------DDKKW-----------------------------K---------P   93 (244)
Q Consensus        84 ~~~--------------------------------~~~~~-----------------------------~---------~   93 (244)
                      +..                                .+++.                             .         .
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~  153 (287)
T d1pgua2          74 ITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEV  153 (287)
T ss_dssp             EEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEE
T ss_pred             ccccccccceeeeeeccCCceEEEeecccceeeeccceeeeeeccccceeeeeeccCcceeeeccccceeeeeeccccce
Confidence            420                                00000                             0         0


Q ss_pred             eEE-EeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCC----------CCEE
Q psy11529         94 TLV-LLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPN----------NHLL  162 (244)
Q Consensus        94 ~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~----------~~~l  162 (244)
                      ... ...+...+.+++|+|++.+|++++.|+.|++||+.....   .......|...|.+++|+|.          +.+|
T Consensus       154 ~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~---~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l  230 (287)
T d1pgua2         154 SFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREV---KTSRWAFRTSKINAISWKPAEKGANEEEIEEDLV  230 (287)
T ss_dssp             EEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE---EECCSCCCSSCEEEEEECCCC------CCSCCEE
T ss_pred             eeeeeeccCCceeEEEeccCccccccccccccccceeeccccc---ccccccccccccceeeecccccccccccCCCCee
Confidence            000 012456789999999999999999999999999987753   33445678889999999875          4589


Q ss_pred             EEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeC
Q psy11529        163 GCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMS  239 (244)
Q Consensus       163 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~  239 (244)
                      ++|+.|+.|++||++                 ...+.+..+.+|   ...|++++|+|++ .|++++.|+.|++|++
T Consensus       231 ~sgs~D~~i~iw~~~-----------------~~~~~~~~~~~h---~~~V~~v~~~~~~-~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         231 ATGSLDTNIFIYSVK-----------------RPMKIIKALNAH---KDGVNNLLWETPS-TLVSSGADACIKRWNV  286 (287)
T ss_dssp             EEEETTSCEEEEESS-----------------CTTCCEEETTSS---TTCEEEEEEEETT-EEEEEETTSCEEEEEE
T ss_pred             EeecCCCeEEEEECC-----------------CCCeEEEEeCCC---CCCeEEEEECCCC-EEEEEECCCeEEEEEE
Confidence            999999999999983                 235566777788   8999999999987 5889999999999986

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.4e-31  Score=198.98  Aligned_cols=233  Identities=15%  Similarity=0.052  Sum_probs=161.5

Q ss_pred             eeEEeCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCC-CCeEEEEeCCccEEE
Q psy11529          3 EVYSFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPN-TNRIVTCSADRNAYV   81 (244)
Q Consensus         3 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~i   81 (244)
                      ++.+.|++.|++++|+|++++||+|+.||+|+|||+..... ........+|..+|.+++|+|+ +.+|++|+.|+.|++
T Consensus         5 ~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~-~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~   83 (342)
T d1yfqa_           5 QIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAK-NVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILK   83 (342)
T ss_dssp             ECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTT-EEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEE
T ss_pred             EcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCc-ceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceee
Confidence            44566789999999999999999999999999999976221 1233344469999999999985 558899999999999


Q ss_pred             EeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCC--CCceeEEEecCCC
Q psy11529         82 WTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPI--KSTITCLDWHPNN  159 (244)
Q Consensus        82 wd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~--~~~v~~~~~~p~~  159 (244)
                      |+  ........... ..+........+.+++..+++++.++.+++||++..............+  ........+.+.+
T Consensus        84 w~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (342)
T d1yfqa_          84 VD--LIGSPSFQALT-NNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNS  160 (342)
T ss_dssp             EC--SSSSSSEEECB-SCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECS
T ss_pred             ee--ccccccccccc-ccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccC
Confidence            99  55554322221 2233344555667778899999999999999998765533333322222  2345567778888


Q ss_pred             CEEEEeeCCCeEEEEEeeecccccCCC-----CC-------------CCCccccccc-------------------eeE-
Q psy11529        160 HLLGCGSTDFKVRVFSAYIKDIESAPQ-----ST-------------NWGSKSTLGN-------------------CLV-  201 (244)
Q Consensus       160 ~~l~~~~~dg~i~i~d~~~~~~~~~~~-----~~-------------~~~~~~~~~~-------------------~~~-  201 (244)
                      ..+++++.|+.|++||++.........     ..             ........+.                   ... 
T Consensus       161 ~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~  240 (342)
T d1yfqa_         161 SRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRC  240 (342)
T ss_dssp             SEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEEC
T ss_pred             CceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeee
Confidence            999999999999999986433211100     00             0000000000                   000 


Q ss_pred             -----EecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCCC
Q psy11529        202 -----ELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQV  242 (244)
Q Consensus       202 -----~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~  242 (244)
                           ....|   ...+++++|+|++++|++|+.||.|++||+++.
T Consensus       241 ~~~~~~~~~~---~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~  283 (342)
T d1yfqa_         241 HRLNLKDTNL---AYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTR  283 (342)
T ss_dssp             CCCCTTCCSS---CCCEEEEEECTTTCCEEEEETTSCEEEEETTTT
T ss_pred             eeeccCCCcc---cccceeEEecCCccEEEEECCCCEEEEEECCCC
Confidence                 01122   567899999999999999999999999999864

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.8e-30  Score=190.76  Aligned_cols=202  Identities=12%  Similarity=0.110  Sum_probs=155.6

Q ss_pred             eCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeC
Q psy11529          7 FGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNN   86 (244)
Q Consensus         7 ~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~   86 (244)
                      .+...+.+++|+|+++.+++++ ++.+++|+...      .....  ....+.+++|+|++++|++++.|+.|++||  +
T Consensus        97 ~~~~~~~~~~~s~~g~~~~~~~-~~~i~~~~~~~------~~~~~--~~~~~~~~~~s~~~~~l~~g~~dg~i~~~d--~  165 (299)
T d1nr0a2          97 KLSSQPLGLAVSADGDIAVAAC-YKHIAIYSHGK------LTEVP--ISYNSSCVALSNDKQFVAVGGQDSKVHVYK--L  165 (299)
T ss_dssp             ECSSCEEEEEECTTSSCEEEEE-SSEEEEEETTE------EEEEE--CSSCEEEEEECTTSCEEEEEETTSEEEEEE--E
T ss_pred             cccccccccccccccccccccc-ccccccccccc------ccccc--cccccccccccccccccccccccccccccc--c
Confidence            3467889999999999887765 57899998643      22222  345678899999999999999999999999  5


Q ss_pred             CCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEee
Q psy11529         87 DDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGS  166 (244)
Q Consensus        87 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~  166 (244)
                      .+++.. ......|...|.+++|+|++++|++++.|+.+++||+.++... ........|...|++++|+|++++|++|+
T Consensus       166 ~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~-~~~~~~~~h~~~v~~l~~s~~~~~l~sgs  243 (299)
T d1nr0a2         166 SGASVS-EVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFEL-AHTNSWTFHTAKVACVSWSPDNVRLATGS  243 (299)
T ss_dssp             ETTEEE-EEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEE-SCCCCCCCCSSCEEEEEECTTSSEEEEEE
T ss_pred             cccccc-ccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccceEEEc
Confidence            555433 2334568899999999999999999999999999999877541 11223455778999999999999999999


Q ss_pred             CCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCC
Q psy11529        167 TDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQ  240 (244)
Q Consensus       167 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~  240 (244)
                      .||.|++||++...                .........|+  ...+..+.| +++++|++++.|+.|++||+.
T Consensus       244 ~dg~i~iwd~~~~~----------------~~~~~~~~~~~--~~~v~~~~~-~~~~~l~s~s~D~~i~iWdl~  298 (299)
T d1nr0a2         244 LDNSVIVWNMNKPS----------------DHPIIIKGAHA--MSSVNSVIW-LNETTIVSAGQDSNIKFWNVP  298 (299)
T ss_dssp             TTSCEEEEETTCTT----------------SCCEEETTSST--TSCEEEEEE-EETTEEEEEETTSCEEEEECC
T ss_pred             CCCEEEEEECCCCC----------------cceEEEecCCC--CCcEEEEEE-CCCCEEEEEeCCCEEEEEecc
Confidence            99999999984211                22233333442  456666655 567899999999999999984

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.7e-30  Score=194.38  Aligned_cols=205  Identities=16%  Similarity=0.124  Sum_probs=160.6

Q ss_pred             EeCCCce-EEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEee
Q psy11529          6 SFGINPV-TTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQ   84 (244)
Q Consensus         6 ~~~~~~v-~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~   84 (244)
                      +-|.+.| +|++|  ++++|++|+.||.|+|||+.+  +  +++.++.+|++.|.+++|+|+ .+|++++.|+.|++|+ 
T Consensus         9 ~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~--~--~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~-   80 (355)
T d1nexb2           9 RGHMTSVITCLQF--EDNYVITGADDKMIRVYDSIN--K--KFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWD-   80 (355)
T ss_dssp             ECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTT--T--EEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEE-
T ss_pred             CCcCCCcEEEEEE--CCCEEEEEeCCCeEEEEECCC--C--cEEEEEECCCCCEEEEEEcCC-CEEEEEeccccccccc-
Confidence            3476665 66555  678999999999999999977  5  788999999999999999985 5899999999999999 


Q ss_pred             eCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCce---------------------------
Q psy11529         85 NNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWW---------------------------  137 (244)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~---------------------------  137 (244)
                       .......................+.+++.++++++.|+.|++||++......                           
T Consensus        81 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (355)
T d1nexb2          81 -IKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRG  159 (355)
T ss_dssp             -TTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEEC
T ss_pred             -ccccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeee
Confidence             6666544333333334445667778888889999999999999876532200                           


Q ss_pred             --------------------------------EEEeeecCCCCceeEEEecCCCCEEEEeeCCCeEEEEEeeecccccCC
Q psy11529        138 --------------------------------VAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAP  185 (244)
Q Consensus       138 --------------------------------~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~  185 (244)
                                                      ........+...+.++.|+|+++++++++.|+.|++||+         
T Consensus       160 ~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~---------  230 (355)
T d1nexb2         160 HMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDL---------  230 (355)
T ss_dssp             CSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEET---------
T ss_pred             ccccccccccccceeeeecccceeeeeecccccceeeeeccccccccccccccceeeecccccceEEeeec---------
Confidence                                            001112234456778899999999999999999999998         


Q ss_pred             CCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCCC
Q psy11529        186 QSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQV  242 (244)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~  242 (244)
                               .++..+..+.+|   ...|.+++|+  +++|++++.||.|++||+++.
T Consensus       231 ---------~~~~~~~~~~~h---~~~v~~~~~~--~~~l~~~~~dg~i~iwd~~~~  273 (355)
T d1nexb2         231 ---------ENGELMYTLQGH---TALVGLLRLS--DKFLVSAAADGSIRGWDANDY  273 (355)
T ss_dssp             ---------TTCCEEEEECCC---SSCCCEEEEC--SSEEEEECTTSEEEEEETTTC
T ss_pred             ---------cccccccccccc---cccccccccc--cceeeeeeccccccccccccc
Confidence                     678888889998   8899999886  468999999999999999864

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=3.4e-30  Score=191.76  Aligned_cols=204  Identities=17%  Similarity=0.202  Sum_probs=150.1

Q ss_pred             eeEEeCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEE
Q psy11529          3 EVYSFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVW   82 (244)
Q Consensus         3 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw   82 (244)
                      .+.+.|.+.|.+ +++++|++||+|+.||+|+|||+.+  +  +++.++.+|...|.+++|+|+  +|++++.|+.+++|
T Consensus        10 ~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~--~--~~~~~~~~h~~~V~~v~~~~~--~l~s~s~D~~~~~~   82 (342)
T d2ovrb2          10 KVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVT--G--KCLRTLVGHTGGVWSSQMRDN--IIISGSTDRTLKVW   82 (342)
T ss_dssp             EEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTT--C--CEEEECCCCSSCEEEEEEETT--EEEEEETTSCEEEE
T ss_pred             EEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCC--C--CEEEEEeCCCCCEEEEEeCCC--ccccceeccccccc
Confidence            346678888865 4667899999999999999999977  5  678889999999999999864  77888777777777


Q ss_pred             eee-----------------------------------------------------------------------------
Q psy11529         83 TQN-----------------------------------------------------------------------------   85 (244)
Q Consensus        83 d~~-----------------------------------------------------------------------------   85 (244)
                      +..                                                                             
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~  162 (342)
T d2ovrb2          83 NAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVW  162 (342)
T ss_dssp             ETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEE
T ss_pred             ccccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCeEEEe
Confidence            632                                                                             


Q ss_pred             -----------------------------------------CCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCe
Q psy11529         86 -----------------------------------------NDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARL  124 (244)
Q Consensus        86 -----------------------------------------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~  124 (244)
                                                               ...++  .......|...+.+++++  +++|++++.|+.
T Consensus       163 d~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~d~~~~~--~~~~~~~~~~~v~~~~~~--~~~l~s~s~d~~  238 (342)
T d2ovrb2         163 DPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGN--CIHTLTGHQSLTSGMELK--DNILVSGNADST  238 (342)
T ss_dssp             EGGGTEEEEEECCCSSCEEEEEECSSEEEEEETTSCEEEEETTTCC--EEEEECCCCSCEEEEEEE--TTEEEEEETTSC
T ss_pred             ecccceeeEEEcCcccccccccCCCCEEEEEeCCCeEEEeecccce--eeeEecccccceeEEecC--CCEEEEEcCCCE
Confidence                                                     11111  011122344455556554  468999999999


Q ss_pred             EEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEec
Q psy11529        125 ISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELN  204 (244)
Q Consensus       125 i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (244)
                      |++||+...+... .......|...+.++.++  ++++++|+.||.|++||+                  .+++.+..+.
T Consensus       239 i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~s~s~Dg~i~iwd~------------------~tg~~i~~~~  297 (342)
T d2ovrb2         239 VKIWDIKTGQCLQ-TLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDL------------------KTGEFIRNLV  297 (342)
T ss_dssp             EEEEETTTCCEEE-EECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEET------------------TTCCEEEEEE
T ss_pred             EEEEecccccccc-cccccceeeeceeecccC--CCeeEEEcCCCEEEEEEC------------------CCCCEEEEEe
Confidence            9999988776411 111122344566666665  569999999999999999                  6677776664


Q ss_pred             -----CCCCCCCCeEEEEEecCCCEEEEeeCCCc----EEEEeCCC
Q psy11529        205 -----NSSSGGGWIHSVAFSKDGNKLCWTSHDGS----INVRMSQQ  241 (244)
Q Consensus       205 -----~~~~~~~~v~~~~~s~~~~~l~~~~~dg~----i~vwd~~~  241 (244)
                           +|   ...|++++|+|++.+|++|+.||+    |++||++.
T Consensus       298 ~~~~~~~---~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~~  340 (342)
T d2ovrb2         298 TLESGGS---GGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV  340 (342)
T ss_dssp             ECTTGGG---TCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred             cccCCCC---CCCEEEEEECCCCCEEEEEeCCCCCeeEEEEEeCCC
Confidence                 34   678999999999999999999985    99999874

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=2.9e-30  Score=188.18  Aligned_cols=201  Identities=18%  Similarity=0.244  Sum_probs=138.8

Q ss_pred             EeCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeee
Q psy11529          6 SFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQN   85 (244)
Q Consensus         6 ~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~   85 (244)
                      .-+...|+|++  +|+++||+|+.||.|+|||+.+  +  +++.++.+|...|.+++|  ++++|++|+.|+.|++|++ 
T Consensus        12 ~~~~~~V~c~~--~d~~~l~sgs~Dg~i~vWd~~~--~--~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~-   82 (293)
T d1p22a2          12 SETSKGVYCLQ--YDDQKIVSGLRDNTIKIWDKNT--L--ECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDV-   82 (293)
T ss_dssp             CSSCCCEEEEE--CCSSEEEEEESSSCEEEEESSS--C--CEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEES-
T ss_pred             CCCCCCEEEEE--EcCCEEEEEeCCCeEEEEECCC--C--cEEEEEecCCCCEeeeec--ccceeeccccccccccccc-
Confidence            34477898876  5789999999999999999987  5  788899999999999987  4779999999999999994 


Q ss_pred             CCCCCcee-----------------------------------------eE-----------------------------
Q psy11529         86 NDDKKWKP-----------------------------------------TL-----------------------------   95 (244)
Q Consensus        86 ~~~~~~~~-----------------------------------------~~-----------------------------   95 (244)
                       ..+....                                         ..                             
T Consensus        83 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~d~~i~  161 (293)
T d1p22a2          83 -NTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIK  161 (293)
T ss_dssp             -SSCCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEEEEETTSEEE
T ss_pred             -ccccccccccccccccccccccccceeecccccceeEeeccccccccccccccccccccccceecccccccccCCCcee
Confidence             3221100                                         00                             


Q ss_pred             -----------EEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEE
Q psy11529         96 -----------VLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGC  164 (244)
Q Consensus        96 -----------~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~  164 (244)
                                 .+..+...+..+.+  ++..+++++.|+.|++||+++...    ......+...+..  +++++.+|++
T Consensus       162 ~~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~----~~~~~~~~~~v~~--~~~~~~~l~s  233 (293)
T d1p22a2         162 VWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGAC----LRVLEGHEELVRC--IRFDNKRIVS  233 (293)
T ss_dssp             EEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCE----EEEECCCSSCEEE--EECCSSEEEE
T ss_pred             eecCCCCcEEEEEcccccccccccC--CCCeEEEecCCCEEEEEeccccee----eeeecccceeeee--ccccceEEEE
Confidence                       01111122222222  234666677777777777666543    2333444444443  4556778888


Q ss_pred             eeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEe
Q psy11529        165 GSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRM  238 (244)
Q Consensus       165 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd  238 (244)
                      ++.||.|++||+........         ......+..+.+|   ...|.+++|  ++++|++++.||+|+|||
T Consensus       234 g~~dg~i~iwd~~~~~~~~~---------~~~~~~~~~~~~H---~~~V~~v~~--d~~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         234 GAYDGKIKVWDLVAALDPRA---------PAGTLCLRTLVEH---SGRVFRLQF--DEFQIVSSSHDDTILIWD  293 (293)
T ss_dssp             EETTSCEEEEEHHHHTSTTS---------CTTTTEEEEECCC---SSCCCCEEE--CSSCEEECCSSSEEEEEC
T ss_pred             EcCCCEEEEEECCCCccccc---------cCCceeeEEecCC---CCCEEEEEE--cCCEEEEEecCCEEEEeC
Confidence            88888888888743221110         0234567788888   899999998  567899999999999998

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.98  E-value=2.4e-30  Score=197.31  Aligned_cols=226  Identities=14%  Similarity=0.235  Sum_probs=149.9

Q ss_pred             EeCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCc--ce-----------------------------eeee----
Q psy11529          6 SFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAAND--WS-----------------------------QLDV----   50 (244)
Q Consensus         6 ~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~--~~-----------------------------~~~~----   50 (244)
                      ..|.+.|.++++++  +++++++.|++|+||+.......  ..                             .+..    
T Consensus        11 ~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d   88 (393)
T d1sq9a_          11 KAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFS   88 (393)
T ss_dssp             SCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETT
T ss_pred             CcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEEeCC
Confidence            45789999999875  68999999999999995431000  00                             0000    


Q ss_pred             -----e---------------------ccCCCceEEEEeCCC-----CCeEEEEeCCccEEEEeeeCCCC-------Cce
Q psy11529         51 -----L---------------------DGHDLKVTGIDWAPN-----TNRIVTCSADRNAYVWTQNNDDK-------KWK   92 (244)
Q Consensus        51 -----~---------------------~~~~~~v~~~~~~~~-----~~~l~~~~~d~~i~iwd~~~~~~-------~~~   92 (244)
                           +                     ..+...+..++|.++     +.++++++.|+.+++|++.....       ...
T Consensus        89 g~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~  168 (393)
T d1sq9a_          89 GDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWS  168 (393)
T ss_dssp             SCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCC
T ss_pred             CcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeeeec
Confidence                 0                     012233455666653     45788999999999999531111       000


Q ss_pred             eeEE-------EeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEE--eeecCCCCceeEEEecCCCCEEE
Q psy11529         93 PTLV-------LLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAK--HIKKPIKSTITCLDWHPNNHLLG  163 (244)
Q Consensus        93 ~~~~-------~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~--~~~~~~~~~v~~~~~~p~~~~l~  163 (244)
                      ....       ...+...+.+++|+|++ +|++|+.|++|++||+++++......  .....|...|++++|+|+|++|+
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~  247 (393)
T d1sq9a_         169 PTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLA  247 (393)
T ss_dssp             CEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEE
T ss_pred             cceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccccccceee
Confidence            0110       11234568899999997 89999999999999998876532222  23356788999999999999999


Q ss_pred             EeeCCC---eEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCC
Q psy11529        164 CGSTDF---KVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQ  240 (244)
Q Consensus       164 ~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~  240 (244)
                      +|+.|+   .|++||+...+........     .........+.+|   ...|++++|+||+++|++++.|++|+|||++
T Consensus       248 sgs~D~t~~~i~lwd~~~g~~~~~l~~~-----~~~~~~~~~~~gH---~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~  319 (393)
T d1sq9a_         248 IAHDSNSFGCITLYETEFGERIGSLSVP-----THSSQASLGEFAH---SSWVMSLSFNDSGETLCSAGWDGKLRFWDVK  319 (393)
T ss_dssp             EEEEETTEEEEEEEETTTCCEEEEECBC-------------CCBSB---SSCEEEEEECSSSSEEEEEETTSEEEEEETT
T ss_pred             eecCCCCcceeeecccccceeeeeeccc-----cccccceeeeecc---cCceeeeccCCCCCeeEEECCCCEEEEEECC
Confidence            999886   5899998432211100000     0111222233467   8999999999999999999999999999997


Q ss_pred             CC
Q psy11529        241 QV  242 (244)
Q Consensus       241 ~~  242 (244)
                      +.
T Consensus       320 ~g  321 (393)
T d1sq9a_         320 TK  321 (393)
T ss_dssp             TT
T ss_pred             CC
Confidence            63

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.97  E-value=1.5e-28  Score=182.92  Aligned_cols=172  Identities=16%  Similarity=0.249  Sum_probs=145.4

Q ss_pred             eeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeE
Q psy11529         46 SQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLI  125 (244)
Q Consensus        46 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i  125 (244)
                      +..+++++|.++|++++|+|++++|++|+.||+|++||  ..+++..  ..+..|...|.+++|+|+++++++++.|+.+
T Consensus        46 ~~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd--~~~~~~~--~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i  121 (340)
T d1tbga_          46 RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWD--SYTTNKV--HAIPLRSSWVMTCAYAPSGNYVACGGLDNIC  121 (340)
T ss_dssp             CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEE--TTTTEEE--EEEECSCSCEEEEEECTTSSEEEEEETTCCE
T ss_pred             eeeEEECCCCCCEEEEEECCCCCEEEEEECCCceeeee--cccceeE--EEEecccccEEeeEeeccceeeeeeccccee
Confidence            56778999999999999999999999999999999999  7777643  4456788999999999999999999999999


Q ss_pred             EEEEeecCCCceEEE-----------------------------------------eeecCCCCceeEEEecCCCCEEEE
Q psy11529        126 SVCYFESENDWWVAK-----------------------------------------HIKKPIKSTITCLDWHPNNHLLGC  164 (244)
Q Consensus       126 ~i~d~~~~~~~~~~~-----------------------------------------~~~~~~~~~v~~~~~~p~~~~l~~  164 (244)
                      ++|+...........                                         .....+...+....+.+.+.++++
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (340)
T d1tbga_         122 SIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVS  201 (340)
T ss_dssp             EEEESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred             ecccccccccccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeeccccccceeEE
Confidence            999975543211110                                         111122356777888889999999


Q ss_pred             eeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCCC
Q psy11529        165 GSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQV  242 (244)
Q Consensus       165 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~  242 (244)
                      ++.|+.|++||+                  ..++++..+.+|   ...|++++|+|++++|++++.||.|++||++..
T Consensus       202 ~~~d~~v~i~d~------------------~~~~~~~~~~~h---~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~  258 (340)
T d1tbga_         202 GACDASAKLWDV------------------REGMCRQTFTGH---ESDINAICFFPNGNAFATGSDDATCRLFDLRAD  258 (340)
T ss_dssp             EETTTEEEEEET------------------TTTEEEEEECCC---SSCEEEEEECTTSSEEEEEETTSCEEEEETTTT
T ss_pred             eecCceEEEEEC------------------CCCcEEEEEeCC---CCCeEEEEECCCCCEEEEEeCCCeEEEEeeccc
Confidence            999999999999                  678888999998   899999999999999999999999999999764

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=2.9e-29  Score=191.32  Aligned_cols=209  Identities=15%  Similarity=0.138  Sum_probs=152.7

Q ss_pred             CCceEEEEEcCC-----CCeEEEecCCCeEEEeeeccCCC-----------cc---eeeeeeccCCCceEEEEeCCCCCe
Q psy11529          9 INPVTTHAWNNT-----RQQLAFTPNNQEVHLYQYEKAAN-----------DW---SQLDVLDGHDLKVTGIDWAPNTNR   69 (244)
Q Consensus         9 ~~~v~~~~~~~~-----~~~l~~~~~d~~v~v~~~~~~~~-----------~~---~~~~~~~~~~~~v~~~~~~~~~~~   69 (244)
                      ...+..++|.++     +.++++++.||.+++|++.....           ..   ........+...+.+++|+|++ +
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~  197 (393)
T d1sq9a_         119 KHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-L  197 (393)
T ss_dssp             GSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-E
T ss_pred             CCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeeeeccceecccceecccCCCCcEEEEEECCCC-E
Confidence            455777888775     35788999999999999853110           00   0111223355678999999987 8


Q ss_pred             EEEEeCCccEEEEeeeCCCCCceeeE----EEeccCcceEEEEECCCCCeEEEeeCCC---eEEEEEeecCCCceEE---
Q psy11529         70 IVTCSADRNAYVWTQNNDDKKWKPTL----VLLRINRAATCVKWSPLENKFAAGSGAR---LISVCYFESENDWWVA---  139 (244)
Q Consensus        70 l~~~~~d~~i~iwd~~~~~~~~~~~~----~~~~~~~~v~~~~~~~~~~~l~~~~~d~---~i~i~d~~~~~~~~~~---  139 (244)
                      |++|+.|++|++||  +.+++.....    .+.+|...|++++|+|++++|++|+.|+   .|++||+++++.....   
T Consensus       198 lasgs~Dg~i~iwd--~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~  275 (393)
T d1sq9a_         198 IATGFNNGTVQISE--LSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVP  275 (393)
T ss_dssp             EEEECTTSEEEEEE--TTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC
T ss_pred             EEEEeCCCcEEEEe--ecccccccccccccccccccceEEEcccccccceeeeecCCCCcceeeecccccceeeeeeccc
Confidence            89999999999999  7777644333    2346888999999999999999999886   4899999887652221   


Q ss_pred             ------EeeecCCCCceeEEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCC-----
Q psy11529        140 ------KHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSS-----  208 (244)
Q Consensus       140 ------~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  208 (244)
                            .....+|...|++++|+|++++|++++.|++|++||+                  .+++++.++.+|..     
T Consensus       276 ~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~------------------~~g~~~~~l~gH~~~v~~~  337 (393)
T d1sq9a_         276 THSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDV------------------KTKERITTLNMHCDDIEIE  337 (393)
T ss_dssp             --------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEET------------------TTTEEEEEEECCGGGCSSG
T ss_pred             cccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEEC------------------CCCCEEEEECCcCCcccCC
Confidence                  1123468899999999999999999999999999999                  66777777776620     


Q ss_pred             -------------CCCCeEEEEEecCC----------CEEEEeeCCCcEEEEe
Q psy11529        209 -------------GGGWIHSVAFSKDG----------NKLCWTSHDGSINVRM  238 (244)
Q Consensus       209 -------------~~~~v~~~~~s~~~----------~~l~~~~~dg~i~vwd  238 (244)
                                   ....+.++.|.+.+          +.|++.+.|+.|++|.
T Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ir~~~  390 (393)
T d1sq9a_         338 EDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFR  390 (393)
T ss_dssp             GGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEE
T ss_pred             ccEEEECCCCCEEEEcccceEEECccCceeccccCCCCEEEEEEcCCeEEEEe
Confidence                         02335566666532          3477888888888885

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.97  E-value=8.5e-29  Score=185.89  Aligned_cols=157  Identities=10%  Similarity=-0.062  Sum_probs=130.4

Q ss_pred             eCCCceEEEEEcCCCCeEEEecCCC--eEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEee
Q psy11529          7 FGINPVTTHAWNNTRQQLAFTPNNQ--EVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQ   84 (244)
Q Consensus         7 ~~~~~v~~~~~~~~~~~l~~~~~d~--~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~   84 (244)
                      .|...|.+++|+|||++|++++.+.  .|++|+.++     .....+..|...|.+++|+|++++|++++.++.+++|+ 
T Consensus        40 ~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~-----~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~-  113 (360)
T d1k32a3          40 PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRT-----GKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVD-  113 (360)
T ss_dssp             SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTT-----CCEEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEE-
T ss_pred             cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCC-----CcEEEeeCCCceEEeeeecccccccceecccccccccc-
Confidence            4688999999999999998776543  799999988     45567778999999999999999999999999999999 


Q ss_pred             eCCCCCceeeEEEeccCcceEEEEECCCCCeEEEee----------CCCeEEEEEeecCCCceEEEeeecCCCCceeEEE
Q psy11529         85 NNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGS----------GARLISVCYFESENDWWVAKHIKKPIKSTITCLD  154 (244)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~  154 (244)
                       ..+++..  .....+...+.+++|+|+|++|+.+.          .++.+++|++..++.     .....+...+..++
T Consensus       114 -~~~~~~~--~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~-----~~~~~~~~~~~~~~  185 (360)
T d1k32a3         114 -LETGKPT--VIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKI-----FAATTENSHDYAPA  185 (360)
T ss_dssp             -TTTCCEE--EEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEE-----EECSCSSSBEEEEE
T ss_pred             -cccccee--eeeecccccccchhhccceeeeeeeccccccceeeccccceeeeccccCce-----eeeccccccccccc
Confidence             7777643  33456778899999999999998653          345689999887643     33445567888999


Q ss_pred             ecCCCCEEEEeeCCCeEEEEEee
Q psy11529        155 WHPNNHLLGCGSTDFKVRVFSAY  177 (244)
Q Consensus       155 ~~p~~~~l~~~~~dg~i~i~d~~  177 (244)
                      |+|+|++|++++.++.+.+||..
T Consensus       186 ~spdg~~l~~~s~~~~~~~~d~~  208 (360)
T d1k32a3         186 FDADSKNLYYLSYRSLDPSPDRV  208 (360)
T ss_dssp             ECTTSCEEEEEESCCCCCEECSS
T ss_pred             ccCCCCEEEEEeCCCceEccccc
Confidence            99999999999999999999864

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.96  E-value=2.6e-28  Score=183.17  Aligned_cols=191  Identities=9%  Similarity=0.040  Sum_probs=155.7

Q ss_pred             EEEEcC-CCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCC--ccEEEEeeeCCCCC
Q psy11529         14 THAWNN-TRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSAD--RNAYVWTQNNDDKK   90 (244)
Q Consensus        14 ~~~~~~-~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--~~i~iwd~~~~~~~   90 (244)
                      .-.||| ||+++|+++ +|.|++|++.+  +   ....+ .|...|.+++|+|||++|++++.+  ..|++||  .++++
T Consensus         7 ~~~fSP~dG~~~a~~~-~g~v~v~d~~~--~---~~~~~-~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d--~~~~~   77 (360)
T d1k32a3           7 AEDFSPLDGDLIAFVS-RGQAFIQDVSG--T---YVLKV-PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYD--YRTGK   77 (360)
T ss_dssp             EEEEEECGGGCEEEEE-TTEEEEECTTS--S---BEEEC-SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEE--TTTCC
T ss_pred             cccccCCCCCEEEEEE-CCeEEEEECCC--C---cEEEc-cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEE--CCCCc
Confidence            467999 999999987 57999999987  4   33334 589999999999999999877654  3799999  77776


Q ss_pred             ceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEee----
Q psy11529         91 WKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGS----  166 (244)
Q Consensus        91 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~----  166 (244)
                         ...+..+...+.+++|+|++++|++++.++.+++|+++..+.    ......+...+.+++|+|+|++|+.+.    
T Consensus        78 ---~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~spdg~~la~~~~~~~  150 (360)
T d1k32a3          78 ---AEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKP----TVIERSREAMITDFTISDNSRFIAYGFPLKH  150 (360)
T ss_dssp             ---EEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCE----EEEEECSSSCCCCEEECTTSCEEEEEEEECS
T ss_pred             ---EEEeeCCCceEEeeeecccccccceeccccccccccccccce----eeeeecccccccchhhccceeeeeeeccccc
Confidence               344567889999999999999999999999999999988764    445566778899999999999998643    


Q ss_pred             ------CCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCC
Q psy11529        167 ------TDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQ  240 (244)
Q Consensus       167 ------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~  240 (244)
                            .++.+++||+                  ..++.. .+..+   ...+..++|+|||++|++++.|+.+.+|+..
T Consensus       151 ~~~~~~~~~~~~v~d~------------------~~~~~~-~~~~~---~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~  208 (360)
T d1k32a3         151 GETDGYVMQAIHVYDM------------------EGRKIF-AATTE---NSHDYAPAFDADSKNLYYLSYRSLDPSPDRV  208 (360)
T ss_dssp             STTCSCCEEEEEEEET------------------TTTEEE-ECSCS---SSBEEEEEECTTSCEEEEEESCCCCCEECSS
T ss_pred             cceeeccccceeeecc------------------ccCcee-eeccc---ccccccccccCCCCEEEEEeCCCceEccccc
Confidence                  3457899998                  444433 34444   6778999999999999999999999999976


Q ss_pred             CC
Q psy11529        241 QV  242 (244)
Q Consensus       241 ~~  242 (244)
                      ..
T Consensus       209 ~~  210 (360)
T d1k32a3         209 VL  210 (360)
T ss_dssp             SS
T ss_pred             cc
Confidence            43

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=6.9e-28  Score=177.20  Aligned_cols=168  Identities=17%  Similarity=0.278  Sum_probs=150.9

Q ss_pred             eeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeE
Q psy11529         46 SQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLI  125 (244)
Q Consensus        46 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i  125 (244)
                      .....+++|.++|++++|+|++++|++|+.|++|+|||  +.+++..  ..+..|...|.+++|+|++.+++++..++.+
T Consensus         8 ~~~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd--~~~~~~~--~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~   83 (317)
T d1vyhc1           8 PEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWD--YETGDFE--RTLKGHTDSVQDISFDHSGKLLASCSADMTI   83 (317)
T ss_dssp             SCSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEE--TTTCCCC--EEECCCSSCEEEEEECTTSSEEEEEETTSCC
T ss_pred             CccEEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEE--CCCCCEE--EEEeCCCCcEEEEeeeccccccccccccccc
Confidence            44568999999999999999999999999999999999  7777754  4456789999999999999999999999999


Q ss_pred             EEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecC
Q psy11529        126 SVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNN  205 (244)
Q Consensus       126 ~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (244)
                      .+|+......    ......+...+.++.|+|+++.+++++.|+.+++||+                  ..++.+..+..
T Consensus        84 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~------------------~~~~~~~~~~~  141 (317)
T d1vyhc1          84 KLWDFQGFEC----IRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEV------------------QTGYCVKTFTG  141 (317)
T ss_dssp             CEEETTSSCE----EECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEET------------------TTCCEEEEEEC
T ss_pred             cccccccccc----ccccccccccceeeeccCCCceEEeeccCcceeEeec------------------ccceeeeEEcc
Confidence            9999877764    5556677889999999999999999999999999999                  67788888888


Q ss_pred             CCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCCC
Q psy11529        206 SSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQV  242 (244)
Q Consensus       206 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~  242 (244)
                      |   ...+.+++|+|++++|++++.|+.|++|++++.
T Consensus       142 ~---~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~  175 (317)
T d1vyhc1         142 H---REWVRMVRPNQDGTLIASCSNDQTVRVWVVATK  175 (317)
T ss_dssp             C---SSCEEEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred             C---CCcceeeecccCCCEEEEEeCCCeEEEEeeccc
Confidence            8   889999999999999999999999999998764

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=5.3e-26  Score=169.67  Aligned_cols=185  Identities=11%  Similarity=0.173  Sum_probs=148.0

Q ss_pred             EEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCCCCCceeeE
Q psy11529         16 AWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKWKPTL   95 (244)
Q Consensus        16 ~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~   95 (244)
                      .+.+++++++++..|+.|++|++..  +  +.+....++...+.++.|+|++.++++++.|+.|++||  ..++..  ..
T Consensus       166 ~~~~~~~~~~~~~~d~~i~~~d~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d--~~~~~~--~~  237 (355)
T d1nexb2         166 TVSGHGNIVVSGSYDNTLIVWDVAQ--M--KCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWD--LENGEL--MY  237 (355)
T ss_dssp             EEEEETTEEEEEETTSCEEEEETTT--T--EEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEE--TTTCCE--EE
T ss_pred             ccccccceeeeecccceeeeeeccc--c--cceeeeeccccccccccccccceeeecccccceEEeee--cccccc--cc
Confidence            4556788999999999999999977  4  67778888899999999999999999999999999999  777764  34


Q ss_pred             EEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEE-EecCCCCEEEEeeCCCeEEEE
Q psy11529         96 VLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCL-DWHPNNHLLGCGSTDFKVRVF  174 (244)
Q Consensus        96 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~-~~~p~~~~l~~~~~dg~i~i~  174 (244)
                      .+..|...|.+++|++  ++|++++.|+.|++||+++...      ....|...+.++ .++++++++++| .||.|++|
T Consensus       238 ~~~~h~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~g-~d~~i~vw  308 (355)
T d1nexb2         238 TLQGHTALVGLLRLSD--KFLVSAAADGSIRGWDANDYSR------KFSYHHTNLSAITTFYVSDNILVSG-SENQFNIY  308 (355)
T ss_dssp             EECCCSSCCCEEEECS--SEEEEECTTSEEEEEETTTCCE------EEEEECTTCCCCCEEEECSSEEEEE-ETTEEEEE
T ss_pred             cccccccccccccccc--ceeeeeecccccccccccccce------ecccccCCceEEEEEcCCCCEEEEE-eCCEEEEE
Confidence            4567899999999975  6999999999999999987753      122233445554 456677777665 58999999


Q ss_pred             EeeecccccCCCCCCCCccccccceeE-EecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeC
Q psy11529        175 SAYIKDIESAPQSTNWGSKSTLGNCLV-ELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMS  239 (244)
Q Consensus       175 d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~  239 (244)
                      |+                  .+++++. .+.+|   ...|.+++|+|+ .++++++.||+++||.+
T Consensus       309 d~------------------~tg~~~~~~~~~~---~~~V~~v~~~~~-~~~~~~s~dg~~~l~~~  352 (355)
T d1nexb2         309 NL------------------RSGKLVHANILKD---ADQIWSVNFKGK-TLVAAVEKDGQSFLEIL  352 (355)
T ss_dssp             ET------------------TTCCBCCSCTTTT---CSEEEEEEEETT-EEEEEEESSSCEEEEEE
T ss_pred             EC------------------CCCCEEEEEecCC---CCCEEEEEEcCC-eEEEEEECCCcEEEEEE
Confidence            99                  5667664 35566   889999999987 47888899998766643

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.93  E-value=6.3e-25  Score=168.86  Aligned_cols=109  Identities=8%  Similarity=-0.071  Sum_probs=82.6

Q ss_pred             EcCCCC--eEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCCCCCceee
Q psy11529         17 WNNTRQ--QLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKWKPT   94 (244)
Q Consensus        17 ~~~~~~--~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~   94 (244)
                      ++.|.+  ++++.+.||+|+|||+.+  +  +.+.++..| ..+..++|||||+++++++.|+++++||  +.+++....
T Consensus        26 ~~~d~~~~~~V~~~~dg~v~vwD~~t--~--~~~~~l~~g-~~~~~vafSPDGk~l~~~~~d~~v~vwd--~~t~~~~~~   98 (426)
T d1hzua2          26 NDLDLPNLFSVTLRDAGQIALVDGDS--K--KIVKVIDTG-YAVHISRMSASGRYLLVIGRDARIDMID--LWAKEPTKV   98 (426)
T ss_dssp             SCCCGGGEEEEEETTTTEEEEEETTT--C--SEEEEEECC-SSEEEEEECTTSCEEEEEETTSEEEEEE--TTSSSCEEE
T ss_pred             ccCCCCeEEEEEEcCCCEEEEEECCC--C--cEEEEEeCC-CCeeEEEECCCCCEEEEEeCCCCEEEEE--ccCCceeEE
Confidence            444433  457788899999999987  5  777888866 4589999999999999999999999999  777765444


Q ss_pred             EEEe---ccCcceEEEEECCCCCeEEEe-eCCCeEEEEEeec
Q psy11529         95 LVLL---RINRAATCVKWSPLENKFAAG-SGARLISVCYFES  132 (244)
Q Consensus        95 ~~~~---~~~~~v~~~~~~~~~~~l~~~-~~d~~i~i~d~~~  132 (244)
                      ..+.   ++...+.+++|+|||++++++ ..++.+++||...
T Consensus        99 ~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~  140 (426)
T d1hzua2          99 AEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGET  140 (426)
T ss_dssp             EEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTT
T ss_pred             EEEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCc
Confidence            3332   344556677888899887554 4688888888543

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=7e-25  Score=162.49  Aligned_cols=204  Identities=9%  Similarity=0.035  Sum_probs=137.9

Q ss_pred             CCCceEEEEEcCCC-CeEEEecCCCeEEEeeeccCCCcceeeeeecc-CCCceEEEEeCCCCCeEEEEeCCccEEEEeee
Q psy11529          8 GINPVTTHAWNNTR-QQLAFTPNNQEVHLYQYEKAANDWSQLDVLDG-HDLKVTGIDWAPNTNRIVTCSADRNAYVWTQN   85 (244)
Q Consensus         8 ~~~~v~~~~~~~~~-~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~   85 (244)
                      |.++|.+++|+|++ .+|++|+.|+.|++|++..  .  ........ +........+.++...+++++.++.+++||+ 
T Consensus        55 h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~-  129 (342)
T d1yfqa_          55 YKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIG--S--PSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDP-  129 (342)
T ss_dssp             CSSCEEEEEEEESSSEEEEEEETTSCEEEECSSS--S--SSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECH-
T ss_pred             CCCCEEEEEEeCCCCCEEEEcccccceeeeeccc--c--cccccccccccccccccccccccccccccccccccceeec-
Confidence            68999999999864 5799999999999999977  3  22223332 3344445556677889999999999999994 


Q ss_pred             CCCCCceeeEEE--ec--cCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceE-----------------------
Q psy11529         86 NDDKKWKPTLVL--LR--INRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWV-----------------------  138 (244)
Q Consensus        86 ~~~~~~~~~~~~--~~--~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-----------------------  138 (244)
                       +..........  ..  .........+.+.+..+++++.|+.+++|+++.......                       
T Consensus       130 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (342)
T d1yfqa_         130 -RNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEG  208 (342)
T ss_dssp             -HHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCE
T ss_pred             -cccccceeeecccccccccceeeeeeeeccCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCE
Confidence             33222111111  11  112233444555556666666666666666543322000                       


Q ss_pred             -----------------------------EE-----eeecCCCCceeEEEecCCCCEEEEeeCCCeEEEEEeeecccccC
Q psy11529        139 -----------------------------AK-----HIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESA  184 (244)
Q Consensus       139 -----------------------------~~-----~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~  184 (244)
                                                   ..     .....+...+++++|+|++++|++|+.||.|++||+        
T Consensus       209 ~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~--------  280 (342)
T d1yfqa_         209 YACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNL--------  280 (342)
T ss_dssp             EEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEET--------
T ss_pred             EEeecCCCeEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEEC--------
Confidence                                         00     000123346789999999999999999999999999        


Q ss_pred             CCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeC
Q psy11529        185 PQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMS  239 (244)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~  239 (244)
                                .+++.+..+..+    ..+..++|+|++++|++++.|+.+++|..
T Consensus       281 ----------~~~~~l~~~~~~----~~~~~~~~s~~~~~l~~a~sdd~~~~~~~  321 (342)
T d1yfqa_         281 ----------QTRKKIKNFAKF----NEDSVVKIACSDNILCLATSDDTFKTNAA  321 (342)
T ss_dssp             ----------TTTEEEEECCCC----SSSEEEEEEECSSEEEEEEECTHHHHCSS
T ss_pred             ----------CCCcEEEEecCC----CCCEEEEEEeCCCEEEEEEcCCcEEEeee
Confidence                      667778777653    45567889999999999998888777754

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=8.2e-24  Score=154.08  Aligned_cols=152  Identities=13%  Similarity=0.122  Sum_probs=120.9

Q ss_pred             EEEEcCCCCeEEEecCC-CeEEEeeeccCCCcceeeee-eccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCCCCCc
Q psy11529         14 THAWNNTRQQLAFTPNN-QEVHLYQYEKAANDWSQLDV-LDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKW   91 (244)
Q Consensus        14 ~~~~~~~~~~l~~~~~d-~~v~v~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~   91 (244)
                      ..+++++++.+++++.+ +.+++|++.+  .  ..... ...|...+++++|+|++.+|++++.||.|++||  ..++..
T Consensus       123 ~~~~~~~~~~~~v~~~~~~~v~~~~~~~--~--~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d--~~~~~~  196 (287)
T d1pgua2         123 GSAVSLSQNYVAVGLEEGNTIQVFKLSD--L--EVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYD--LQSREV  196 (287)
T ss_dssp             EEEEEECSSEEEEEETTTSCEEEEETTE--E--EEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEE--TTTTEE
T ss_pred             eeeeeccCcceeeeccccceeeeeeccc--c--ceeeeeeeccCCceeEEEeccCcccccccccccccccee--eccccc
Confidence            34567778888877766 4799999866  2  23333 334788999999999999999999999999999  666553


Q ss_pred             eeeEEEeccCcceEEEEECCC----------CCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCE
Q psy11529         92 KPTLVLLRINRAATCVKWSPL----------ENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHL  161 (244)
Q Consensus        92 ~~~~~~~~~~~~v~~~~~~~~----------~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~  161 (244)
                      .. .....|...|.+++|+|.          +.+|++|+.|+.|++||++....   ......+|...|++++|+|++ .
T Consensus       197 ~~-~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~---~~~~~~~h~~~V~~v~~~~~~-~  271 (287)
T d1pgua2         197 KT-SRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMK---IIKALNAHKDGVNNLLWETPS-T  271 (287)
T ss_dssp             EE-CCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTC---CEEETTSSTTCEEEEEEEETT-E
T ss_pred             cc-ccccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCe---EEEEeCCCCCCeEEEEECCCC-E
Confidence            21 223567889999999875          46899999999999999987553   345567899999999999987 5


Q ss_pred             EEEeeCCCeEEEEEe
Q psy11529        162 LGCGSTDFKVRVFSA  176 (244)
Q Consensus       162 l~~~~~dg~i~i~d~  176 (244)
                      |++++.|+.|++|++
T Consensus       272 l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         272 LVSSGADACIKRWNV  286 (287)
T ss_dssp             EEEEETTSCEEEEEE
T ss_pred             EEEEECCCeEEEEEE
Confidence            888999999999996

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=2.8e-23  Score=153.98  Aligned_cols=166  Identities=21%  Similarity=0.207  Sum_probs=125.3

Q ss_pred             ceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCe
Q psy11529         45 WSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARL  124 (244)
Q Consensus        45 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~  124 (244)
                      +++...+++|.+.|.+ +++++|++|++|+.|++|+|||  +.+++..  ..+.+|...|.+++|+|+  +|++++.|+.
T Consensus         6 ~~~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd--~~~~~~~--~~~~~h~~~V~~v~~~~~--~l~s~s~D~~   78 (342)
T d2ovrb2           6 LKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWS--AVTGKCL--RTLVGHTGGVWSSQMRDN--IIISGSTDRT   78 (342)
T ss_dssp             CCCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEE--TTTCCEE--EECCCCSSCEEEEEEETT--EEEEEETTSC
T ss_pred             CCcCEEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEE--CCCCCEE--EEEeCCCCCEEEEEeCCC--ccccceeccc
Confidence            4677889999999865 3666799999999999999999  7787743  445789999999999875  8999999999


Q ss_pred             EEEEEeecCCCceE------------------------------------------------------------------
Q psy11529        125 ISVCYFESENDWWV------------------------------------------------------------------  138 (244)
Q Consensus       125 i~i~d~~~~~~~~~------------------------------------------------------------------  138 (244)
                      +++|+.........                                                                  
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  158 (342)
T d2ovrb2          79 LKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFM  158 (342)
T ss_dssp             EEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSC
T ss_pred             ccccccccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCe
Confidence            99998644321000                                                                  


Q ss_pred             ----------EEeeecCCCCceeEEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCC
Q psy11529        139 ----------AKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSS  208 (244)
Q Consensus       139 ----------~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (244)
                                .......|  ......+.+++.++++++.||.|++||+                  ..++.+..+..|  
T Consensus       159 i~~~d~~~~~~~~~~~~~--~~~~~~~~~~~~~l~s~~~dg~i~~~d~------------------~~~~~~~~~~~~--  216 (342)
T d2ovrb2         159 VKVWDPETETCLHTLQGH--TNRVYSLQFDGIHVVSGSLDTSIRVWDV------------------ETGNCIHTLTGH--  216 (342)
T ss_dssp             EEEEEGGGTEEEEEECCC--SSCEEEEEECSSEEEEEETTSCEEEEET------------------TTCCEEEEECCC--
T ss_pred             EEEeecccceeeEEEcCc--ccccccccCCCCEEEEEeCCCeEEEeec------------------ccceeeeEeccc--
Confidence                      00000111  1223444556778888888888888887                  667788888888  


Q ss_pred             CCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCCC
Q psy11529        209 GGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQV  242 (244)
Q Consensus       209 ~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~  242 (244)
                       ...+.+++++  +++|++++.||.|++||+...
T Consensus       217 -~~~v~~~~~~--~~~l~s~s~d~~i~iwd~~~~  247 (342)
T d2ovrb2         217 -QSLTSGMELK--DNILVSGNADSTVKIWDIKTG  247 (342)
T ss_dssp             -CSCEEEEEEE--TTEEEEEETTSCEEEEETTTC
T ss_pred             -ccceeEEecC--CCEEEEEcCCCEEEEEecccc
Confidence             8888888775  469999999999999998764

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.91  E-value=1.1e-22  Score=151.42  Aligned_cols=199  Identities=13%  Similarity=0.017  Sum_probs=138.9

Q ss_pred             EEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeec-cCCCceEEEEeCCCCCeEE-EEeCCccEEEEeeeCCCCCce
Q psy11529         15 HAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLD-GHDLKVTGIDWAPNTNRIV-TCSADRNAYVWTQNNDDKKWK   92 (244)
Q Consensus        15 ~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~-~~~~d~~i~iwd~~~~~~~~~   92 (244)
                      ++|++++++|++++.+++|.+||+.+  +  +.+.+++ .+...+.+++|+|||++++ ++..++.|.+||  +.+++..
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t--~--~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d--~~t~~~~   75 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVAS--D--TVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGID--LDTCKNT   75 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTT--T--EEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEE--TTTTEEE
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCC--C--CEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEe--CccCeee
Confidence            57899999999999999999999987  5  6667665 3566778999999999875 555789999999  7777654


Q ss_pred             eeEEEecc----CcceEEEEECCCCCeEEEee------------CCCeEEEEEeecCCCceE------------------
Q psy11529         93 PTLVLLRI----NRAATCVKWSPLENKFAAGS------------GARLISVCYFESENDWWV------------------  138 (244)
Q Consensus        93 ~~~~~~~~----~~~v~~~~~~~~~~~l~~~~------------~d~~i~i~d~~~~~~~~~------------------  138 (244)
                      ........    ...+..++|+|||+++++++            .+..+.+|+..++.....                  
T Consensus        76 ~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (346)
T d1jmxb_          76 FHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADD  155 (346)
T ss_dssp             EEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTT
T ss_pred             eeecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCC
Confidence            43332111    12356789999998887764            355566666543221000                  


Q ss_pred             --------------------E-----------------------------------------------------------
Q psy11529        139 --------------------A-----------------------------------------------------------  139 (244)
Q Consensus       139 --------------------~-----------------------------------------------------------  139 (244)
                                          .                                                           
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (346)
T d1jmxb_         156 GSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSV  235 (346)
T ss_dssp             SCEEEESSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEE
T ss_pred             CEEEEeCCcceEEEccCCCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEE
Confidence                                0                                                           


Q ss_pred             --------EeeecCCCCceeEEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCC
Q psy11529        140 --------KHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGG  211 (244)
Q Consensus       140 --------~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (244)
                              .....++...+..+.+++++.+++... ++.|.+||.                  .+++.+..+..    ..
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~v~d~------------------~~~~~~~~~~~----~~  292 (346)
T d1jmxb_         236 DLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDL------------------KQRKLIKAANL----DH  292 (346)
T ss_dssp             ETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE-ESEEEEEET------------------TTTEEEEEEEC----SS
T ss_pred             ECCCCceEEEEeecccceeEEEEEeCCCCEEEEec-CCeEEEEEC------------------CCCcEEEEEcC----CC
Confidence                    000011122344555666665555543 356888887                  66777776664    56


Q ss_pred             CeEEEEEecCCCEEEEeeCCCcEEEEeCCCC
Q psy11529        212 WIHSVAFSKDGNKLCWTSHDGSINVRMSQQV  242 (244)
Q Consensus       212 ~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~  242 (244)
                      .+.+++|+|||++|++++.|+.|++||+++.
T Consensus       293 ~~~~va~s~DG~~l~v~~~d~~v~v~D~~t~  323 (346)
T d1jmxb_         293 TYYCVAFDKKGDKLYLGGTFNDLAVFNPDTL  323 (346)
T ss_dssp             CCCEEEECSSSSCEEEESBSSEEEEEETTTT
T ss_pred             CEEEEEEcCCCCEEEEEeCCCcEEEEECccC
Confidence            7899999999999999999999999999875

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.91  E-value=3.1e-21  Score=140.86  Aligned_cols=201  Identities=11%  Similarity=0.096  Sum_probs=138.0

Q ss_pred             CceEEEEEcCCCCeEE-EecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEE-EeCCccEEEEeeeCC
Q psy11529         10 NPVTTHAWNNTRQQLA-FTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVT-CSADRNAYVWTQNND   87 (244)
Q Consensus        10 ~~v~~~~~~~~~~~l~-~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d~~i~iwd~~~~   87 (244)
                      ..+..++|+|||++|+ +++.++.|++||+.+  +  +.+..+..+. .+..++|++++..++. +..++.+.+|+  ..
T Consensus        32 ~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t--~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~  104 (301)
T d1l0qa2          32 SNPMGAVISPDGTKVYVANAHSNDVSIIDTAT--N--NVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVID--TT  104 (301)
T ss_dssp             SSEEEEEECTTSSEEEEEEGGGTEEEEEETTT--T--EEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEE--TT
T ss_pred             CCceEEEEeCCCCEEEEEECCCCEEEEEECCC--C--ceeeeeeccc-cccccccccccccccccccccceeeecc--cc
Confidence            5578999999999874 566789999999987  4  6677777654 4688999999986654 55678899999  67


Q ss_pred             CCCceeeEEEeccCcceEEEEECCCCCeEEE-eeCCCeEEEEEeecCCCceEEEee------------------------
Q psy11529         88 DKKWKPTLVLLRINRAATCVKWSPLENKFAA-GSGARLISVCYFESENDWWVAKHI------------------------  142 (244)
Q Consensus        88 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d~~i~i~d~~~~~~~~~~~~~------------------------  142 (244)
                      +++....   ..+.....++.|+|+++.++. +..++.+.+|+..+..........                        
T Consensus       105 ~~~~~~~---~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (301)
T d1l0qa2         105 SNTVAGT---VKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMS  181 (301)
T ss_dssp             TTEEEEE---EECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTE
T ss_pred             cceeeee---ccccccceEEEeecCCCeeeeeeccccceeeeeccccceeeecccCCCceEEEeeccccceeeecccccc
Confidence            7653322   345567789999999988755 455788889887665431100000                        


Q ss_pred             -------------ecCCCCceeEEEecCCCCEEEEeeC---CCeEEEEEeeecccccCCCCCCCCccccccceeEEecCC
Q psy11529        143 -------------KKPIKSTITCLDWHPNNHLLGCGST---DFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNS  206 (244)
Q Consensus       143 -------------~~~~~~~v~~~~~~p~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (244)
                                   .......+..++++++++.++++..   ++.|++||+                  .+++.+..+.. 
T Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~------------------~t~~~~~~~~~-  242 (301)
T d1l0qa2         182 ISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDT------------------GTNKITARIPV-  242 (301)
T ss_dssp             EEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEET------------------TTTEEEEEEEC-
T ss_pred             cccccccceeeeecccccCCcceeeccccccccccccccceeeeeeeeec------------------CCCeEEEEEcC-
Confidence                         0000123344556666654443322   245666665                  55666666665 


Q ss_pred             CCCCCCeEEEEEecCCCEE-EEeeCCCcEEEEeCCCC
Q psy11529        207 SSGGGWIHSVAFSKDGNKL-CWTSHDGSINVRMSQQV  242 (244)
Q Consensus       207 ~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~vwd~~~~  242 (244)
                         ...+..++|+|||++| ++++.|+.|++||+++.
T Consensus       243 ---~~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~  276 (301)
T d1l0qa2         243 ---GPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATN  276 (301)
T ss_dssp             ---CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred             ---CCCEEEEEEeCCCCEEEEEECCCCeEEEEECCCC
Confidence               4568999999999976 57778999999999864

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.90  E-value=1.6e-21  Score=144.42  Aligned_cols=199  Identities=10%  Similarity=0.030  Sum_probs=144.5

Q ss_pred             CceEEEEEcCCCCeE-EEecCCCeEEEeeeccCCCcceeeeeeccCC-----CceEEEEeCCCCCeEEEEeC--------
Q psy11529         10 NPVTTHAWNNTRQQL-AFTPNNQEVHLYQYEKAANDWSQLDVLDGHD-----LKVTGIDWAPNTNRIVTCSA--------   75 (244)
Q Consensus        10 ~~v~~~~~~~~~~~l-~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~l~~~~~--------   75 (244)
                      ..+.+++|+|||+++ ++++.++.|.+||+.+  +  +.+..+..+.     ..+..++|+|++++++++..        
T Consensus        34 ~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t--~--~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~  109 (337)
T d1pbyb_          34 PTPMVPMVAPGGRIAYATVNKSESLVKIDLVT--G--ETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTH  109 (337)
T ss_dssp             TCCCCEEECTTSSEEEEEETTTTEEEEEETTT--C--CEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSC
T ss_pred             CCccEEEECCCCCEEEEEECCCCeEEEEECCC--C--cEEEEEecCCCcccccceeeEEEcCCCcEEEEeecCCcceeee
Confidence            457799999999987 4667789999999987  5  5555554443     33457899999999987753        


Q ss_pred             ----CccEEEEeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceE-------------
Q psy11529         76 ----DRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWV-------------  138 (244)
Q Consensus        76 ----d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-------------  138 (244)
                          +..+.+||  ..+++.....   .....+..++|+|+++++++++.+  +.+||..+.+....             
T Consensus       110 ~~~~~~~~~~~d--~~~~~~~~~~---~~~~~~~~~~~s~dg~~l~~~~~~--~~~~d~~~~~~~~~~~~~~~~~~~~~~  182 (337)
T d1pbyb_         110 FEVQPTRVALYD--AETLSRRKAF---EAPRQITMLAWARDGSKLYGLGRD--LHVMDPEAGTLVEDKPIQSWEAETYAQ  182 (337)
T ss_dssp             EEECCCEEEEEE--TTTTEEEEEE---ECCSSCCCEEECTTSSCEEEESSS--EEEEETTTTEEEEEECSTTTTTTTBCC
T ss_pred             ccccccceeecc--ccCCeEEEec---cccCCceEEEEcCCCCEEEEEcCC--cceeeeecCcEEEEeecCCccccceec
Confidence                46788888  6666533322   345678899999999999988654  55677544321000             


Q ss_pred             -------------------------------------------------EEeeecCCCCceeEEEecCCCCEEEEeeCCC
Q psy11529        139 -------------------------------------------------AKHIKKPIKSTITCLDWHPNNHLLGCGSTDF  169 (244)
Q Consensus       139 -------------------------------------------------~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg  169 (244)
                                                                       ......++...+..+.++|++.+++.+  ++
T Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~  260 (337)
T d1pbyb_         183 PDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YN  260 (337)
T ss_dssp             CBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ES
T ss_pred             CCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccceEEEEc--cc
Confidence                                                             001111223455667788888877665  58


Q ss_pred             eEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCCCC
Q psy11529        170 KVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQVL  243 (244)
Q Consensus       170 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~  243 (244)
                      .|++||+                  .+++.+..+..    ...+.+++|+|||++|++++.|++|++||++++.
T Consensus       261 ~i~v~d~------------------~~~~~~~~~~~----~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~  312 (337)
T d1pbyb_         261 VLESFDL------------------EKNASIKRVPL----PHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLE  312 (337)
T ss_dssp             EEEEEET------------------TTTEEEEEEEC----SSCCCEEEECTTSCEEEEESBSSEEEEEETTTCC
T ss_pred             cEEEEEC------------------CCCcEEEEEcC----CCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCc
Confidence            8999999                  67777777764    6678999999999999999999999999998753

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=2.1e-21  Score=140.73  Aligned_cols=163  Identities=13%  Similarity=0.232  Sum_probs=110.7

Q ss_pred             eeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeE
Q psy11529         46 SQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLI  125 (244)
Q Consensus        46 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i  125 (244)
                      +.+.....|...|+|++|  ++++|++|+.||+|+|||  +.+++..  ..+.+|...|.+++|  ++++|++++.|+.+
T Consensus         6 ~~i~~~~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd--~~~~~~~--~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i   77 (293)
T d1p22a2           6 QRIHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWD--KNTLECK--RILTGHTGSVLCLQY--DERVIITGSSDSTV   77 (293)
T ss_dssp             CCEECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEE--SSSCCEE--EEECCCSSCEEEEEC--CSSEEEEEETTSCE
T ss_pred             EEEeccCCCCCCEEEEEE--cCCEEEEEeCCCeEEEEE--CCCCcEE--EEEecCCCCEeeeec--ccceeecccccccc
Confidence            455556678889998765  689999999999999999  7777744  445689999999988  56799999999999


Q ss_pred             EEEEeecCCCce---------------------------------------EEEeeecCCCCceeEEEecCCCCEEEEee
Q psy11529        126 SVCYFESENDWW---------------------------------------VAKHIKKPIKSTITCLDWHPNNHLLGCGS  166 (244)
Q Consensus       126 ~i~d~~~~~~~~---------------------------------------~~~~~~~~~~~~v~~~~~~p~~~~l~~~~  166 (244)
                      ++|++..+....                                       ........+...+..+.+.  ...+++++
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~s  155 (293)
T d1p22a2          78 RVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSAS  155 (293)
T ss_dssp             EEEESSSCCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEE--TTEEEEEE
T ss_pred             cccccccccccccccccccccccccccccceeecccccceeEeeccccccccccccccccccccccceec--cccccccc
Confidence            999986654310                                       0011112233444444443  34677778


Q ss_pred             CCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCC
Q psy11529        167 TDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQ  241 (244)
Q Consensus       167 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~  241 (244)
                      .|+.|++||+                  ..++.+..+.++   ...+..+.++  +.++++++.||.|++||+++
T Consensus       156 ~d~~i~~~d~------------------~~~~~~~~~~~~---~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~  207 (293)
T d1p22a2         156 GDRTIKVWNT------------------STCEFVRTLNGH---KRGIACLQYR--DRLVVSGSSDNTIRLWDIEC  207 (293)
T ss_dssp             TTSEEEEEET------------------TTCCEEEEEECC---SSCEEEEEEE--TTEEEEEETTSCEEEEETTT
T ss_pred             CCCceeeecC------------------CCCcEEEEEccc---ccccccccCC--CCeEEEecCCCEEEEEeccc
Confidence            8888888888                  445555555555   4555554443  34566666666666666654

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.90  E-value=8.8e-22  Score=151.23  Aligned_cols=191  Identities=9%  Similarity=-0.079  Sum_probs=140.8

Q ss_pred             eEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCCCCCceeeEEEe---c
Q psy11529         23 QLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLL---R   99 (244)
Q Consensus        23 ~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~---~   99 (244)
                      ++++.+.+|+|.|||..+  +  +.+..+..+ ..+..++|||||+++++++.|+.+.+||  +.+++......+.   .
T Consensus        34 ~~v~~~d~g~v~v~D~~t--~--~v~~~~~~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d--~~t~~~~~~~~i~~~~~  106 (432)
T d1qksa2          34 FSVTLRDAGQIALIDGST--Y--EIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMID--LWMKEPTTVAEIKIGSE  106 (432)
T ss_dssp             EEEEETTTTEEEEEETTT--C--CEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEE--TTSSSCCEEEEEECCSE
T ss_pred             EEEEEcCCCEEEEEECCC--C--cEEEEEeCC-CCeeEEEECCCCCEEEEEcCCCCEEEEE--eeCCCceEEEEEecCCC
Confidence            457889999999999987  5  777888766 4689999999999999999999999999  6766543333322   3


Q ss_pred             cCcceEEEEECCCCCeE-EEeeCCCeEEEEEeecCCCceEEEee-------ecCCCCceeEEEecCCCCEE-EEeeCCCe
Q psy11529        100 INRAATCVKWSPLENKF-AAGSGARLISVCYFESENDWWVAKHI-------KKPIKSTITCLDWHPNNHLL-GCGSTDFK  170 (244)
Q Consensus       100 ~~~~v~~~~~~~~~~~l-~~~~~d~~i~i~d~~~~~~~~~~~~~-------~~~~~~~v~~~~~~p~~~~l-~~~~~dg~  170 (244)
                      +.+.+.+..|+|||++| +++..++.+++||..+.+........       ..........+.++|+|..+ ++...++.
T Consensus       107 ~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~  186 (432)
T d1qksa2         107 ARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGK  186 (432)
T ss_dssp             EEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTE
T ss_pred             CCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCe
Confidence            44556667788999986 66778999999999888752221110       01123566788999999865 55667899


Q ss_pred             EEEEEeeecccccCCCCCCCCcccccccee--EEecCCCCCCCCeEEEEEecCCCEEEEeeC-CCcEEEEeCCCC
Q psy11529        171 VRVFSAYIKDIESAPQSTNWGSKSTLGNCL--VELNNSSSGGGWIHSVAFSKDGNKLCWTSH-DGSINVRMSQQV  242 (244)
Q Consensus       171 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~vwd~~~~  242 (244)
                      |.+||.                  ...+..  ..+..    ...+..++|+|||+++++++. ++.+.++|.++.
T Consensus       187 i~~~d~------------------~~~~~~~~~~i~~----g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~  239 (432)
T d1qksa2         187 ILLVDY------------------TDLNNLKTTEISA----ERFLHDGGLDGSHRYFITAANARNKLVVIDTKEG  239 (432)
T ss_dssp             EEEEET------------------TCSSEEEEEEEEC----CSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTT
T ss_pred             EEEEEc------------------cCCCcceEEEEcc----cCccccceECCCCCEEEEeccccceEEEeecccc
Confidence            999997                  344433  33332    567899999999998777764 557888888653

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.90  E-value=3.7e-21  Score=147.75  Aligned_cols=161  Identities=7%  Similarity=-0.057  Sum_probs=118.3

Q ss_pred             CceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeee---eccCCCceEEEEeCCCCCeE-EEEeCCccEEEEeee
Q psy11529         10 NPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDV---LDGHDLKVTGIDWAPNTNRI-VTCSADRNAYVWTQN   85 (244)
Q Consensus        10 ~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~iwd~~   85 (244)
                      ..+..++|||||+++++++.|+.|++||+.+  ++......   ..+|.+.+.+..|+|||++| ++++.++.+++||  
T Consensus        62 ~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t--~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d--  137 (432)
T d1qksa2          62 YAVHISRLSASGRYLFVIGRDGKVNMIDLWM--KEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMD--  137 (432)
T ss_dssp             SCEEEEEECTTSCEEEEEETTSEEEEEETTS--SSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEE--
T ss_pred             CCeeEEEECCCCCEEEEEcCCCCEEEEEeeC--CCceEEEEEecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEe--
Confidence            4689999999999999999999999999976  32233333   34566667777889999986 6777899999999  


Q ss_pred             CCCCCceeeEEE---------eccCcceEEEEECCCCCeEE-EeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEe
Q psy11529         86 NDDKKWKPTLVL---------LRINRAATCVKWSPLENKFA-AGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDW  155 (244)
Q Consensus        86 ~~~~~~~~~~~~---------~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~  155 (244)
                      ..+++.......         .........+.++|++..++ +...++.+.+||....+.   ......+....+..++|
T Consensus       138 ~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~---~~~~~i~~g~~~~~~~~  214 (432)
T d1qksa2         138 GETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNN---LKTTEISAERFLHDGGL  214 (432)
T ss_dssp             TTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSE---EEEEEEECCSSEEEEEE
T ss_pred             CccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCc---ceEEEEcccCccccceE
Confidence            788775544321         12345567889999988765 456688999999877654   22222234467889999


Q ss_pred             cCCCCEEEEeeC-CCeEEEEEee
Q psy11529        156 HPNNHLLGCGST-DFKVRVFSAY  177 (244)
Q Consensus       156 ~p~~~~l~~~~~-dg~i~i~d~~  177 (244)
                      +|+|+++++++. ++.+.++|..
T Consensus       215 spdg~~~~va~~~~~~v~v~d~~  237 (432)
T d1qksa2         215 DGSHRYFITAANARNKLVVIDTK  237 (432)
T ss_dssp             CTTSCEEEEEEGGGTEEEEEETT
T ss_pred             CCCCCEEEEeccccceEEEeecc
Confidence            999998777765 4578888864

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.87  E-value=7.4e-20  Score=135.36  Aligned_cols=166  Identities=11%  Similarity=0.022  Sum_probs=110.3

Q ss_pred             CCCceEEEEEcCCCCeEEEe-cCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeC-CccEEEEeee
Q psy11529          8 GINPVTTHAWNNTRQQLAFT-PNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSA-DRNAYVWTQN   85 (244)
Q Consensus         8 ~~~~v~~~~~~~~~~~l~~~-~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~iwd~~   85 (244)
                      +.+.+..++|+|||++|+++ ..|+.|++|++........... ...+...+..++|+|||++|++++. ++.+.+|+  
T Consensus        35 ~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~-~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~--  111 (333)
T d1ri6a_          35 VPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAA-ESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTR--  111 (333)
T ss_dssp             CSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEE-EEECSSCCSEEEECTTSSEEEEEETTTTEEEEEE--
T ss_pred             CCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEee-ecccCCCceEEEEcCCCCEEeecccCCCceeeec--
Confidence            46889999999999988555 4589999999976222112222 2234556778999999999998875 67899998  


Q ss_pred             CCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeC-CCeEEEEEeecCCCceEEE--eeecCCCCceeEEEecCCCCEE
Q psy11529         86 NDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSG-ARLISVCYFESENDWWVAK--HIKKPIKSTITCLDWHPNNHLL  162 (244)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~i~d~~~~~~~~~~~--~~~~~~~~~v~~~~~~p~~~~l  162 (244)
                      ..............+...+.++.++|+++++++++. +..+.+|+...........  ............++|++++.++
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~  191 (333)
T d1ri6a_         112 LEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYA  191 (333)
T ss_dssp             EETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEE
T ss_pred             cccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeE
Confidence            555544444445566778889999999998887765 5678899887665421111  1122233445667777766655


Q ss_pred             EEee-CCCeEEEEEe
Q psy11529        163 GCGS-TDFKVRVFSA  176 (244)
Q Consensus       163 ~~~~-~dg~i~i~d~  176 (244)
                      +... ..+...+++.
T Consensus       192 ~~~~~~~~~~~v~~~  206 (333)
T d1ri6a_         192 YCVNELNSSVDVWEL  206 (333)
T ss_dssp             EEEETTTTEEEEEES
T ss_pred             EeeccccCceEEEee
Confidence            4443 3445555554

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.86  E-value=5.4e-21  Score=146.74  Aligned_cols=74  Identities=3%  Similarity=-0.116  Sum_probs=55.9

Q ss_pred             CCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeee---ccCCCceEEEEeCCCCCeEEEE-eCCccEEEEee
Q psy11529          9 INPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVL---DGHDLKVTGIDWAPNTNRIVTC-SADRNAYVWTQ   84 (244)
Q Consensus         9 ~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~iwd~   84 (244)
                      ...+..++|||||++|++++.|+.|++||+.+  ++......+   .+|...+.+++|+|||++++++ ..++.+.+||.
T Consensus        61 g~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t--~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~  138 (426)
T d1hzua2          61 GYAVHISRMSASGRYLLVIGRDARIDMIDLWA--KEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDG  138 (426)
T ss_dssp             CSSEEEEEECTTSCEEEEEETTSEEEEEETTS--SSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEET
T ss_pred             CCCeeEEEECCCCCEEEEEeCCCCEEEEEccC--CceeEEEEEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcC
Confidence            35689999999999999999999999999977  422333333   3456667777888899887554 46788888873

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.82  E-value=1.2e-17  Score=125.38  Aligned_cols=222  Identities=9%  Similarity=-0.039  Sum_probs=132.2

Q ss_pred             CCCceEEEEEcCCCCeEEEe-----cCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEe--------
Q psy11529          8 GINPVTTHAWNNTRQQLAFT-----PNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCS--------   74 (244)
Q Consensus         8 ~~~~v~~~~~~~~~~~l~~~-----~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--------   74 (244)
                      +..++.+++++|||+.+++.     +..+.|.+||..+  +  +.+.++..+..+  .++|+|||++|++++        
T Consensus        19 ~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~t--g--~~~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~   92 (373)
T d2madh_          19 ADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGS--G--SILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAK   92 (373)
T ss_pred             CCCCccccccCCCCCEEEEEcccccCCCceEEEEECCC--C--CEEEEEeCCCCc--cEEEcCCCCEEEEEeecCCcccc
Confidence            47889999999999998765     2346799999876  5  666777665544  799999999998874        


Q ss_pred             --CCccEEEEeeeCCCCCceeeEEE---------------------------------------------eccCcceEEE
Q psy11529         75 --ADRNAYVWTQNNDDKKWKPTLVL---------------------------------------------LRINRAATCV  107 (244)
Q Consensus        75 --~d~~i~iwd~~~~~~~~~~~~~~---------------------------------------------~~~~~~v~~~  107 (244)
                        .++.|.+||  ..+++.......                                             ..+.....++
T Consensus        93 ~~~~~~v~v~D--~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (373)
T d2madh_          93 GKRTDYVEVFD--PVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLLSSPTCY  170 (373)
T ss_pred             cccceEEEEEE--CCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEeccceeE
Confidence              357899999  666553322110                                             0111223456


Q ss_pred             EECCCCCeE-EEeeCCCeEEEEEeecCCCceEEEeeecCC--CCceeEEEecCCCCEEEEeeCCCeEEEEEeeecccc--
Q psy11529        108 KWSPLENKF-AAGSGARLISVCYFESENDWWVAKHIKKPI--KSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIE--  182 (244)
Q Consensus       108 ~~~~~~~~l-~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~--~~~v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~--  182 (244)
                      .++|+++.+ ++.+.|+.+.+|+.................  ......+.+.+++.+ +..+.++.+.+|+.......  
T Consensus       171 ~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~  249 (373)
T d2madh_         171 HIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRI-VWPVYSGKILQADISAAGATNK  249 (373)
T ss_pred             EEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceE-EEecCCceEEEEEcCCCeEEEE
Confidence            677776654 566778888888877655422111111111  112223334444433 33344555555554321100  


Q ss_pred             --------------cCCCC----------C--------------------CCCccccccceeEEecCCCCCCCCeEEEEE
Q psy11529        183 --------------SAPQS----------T--------------------NWGSKSTLGNCLVELNNSSSGGGWIHSVAF  218 (244)
Q Consensus       183 --------------~~~~~----------~--------------------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  218 (244)
                                    ..+..          .                    ...-...+++.+..+..    ...+..++|
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~~----~~~~~~~a~  325 (373)
T d2madh_         250 APIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISL----GHDVDAISV  325 (373)
T ss_pred             EeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEecC----CCCeeEEEE
Confidence                          00000          0                    00001144555555543    567899999


Q ss_pred             ecCCCE--EEEeeCCCcEEEEeCCCC
Q psy11529        219 SKDGNK--LCWTSHDGSINVRMSQQV  242 (244)
Q Consensus       219 s~~~~~--l~~~~~dg~i~vwd~~~~  242 (244)
                      +|||+.  +++++.|+.|++||+.+.
T Consensus       326 spDG~~~l~vt~~~d~~v~v~D~~tg  351 (373)
T d2madh_         326 AQDGGPDLYALSAGTEVLHIYDAGAG  351 (373)
T ss_pred             CCCCCEEEEEEeCCCCeEEEEECCCC
Confidence            999984  467889999999999875

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.81  E-value=2.8e-17  Score=121.27  Aligned_cols=197  Identities=12%  Similarity=0.055  Sum_probs=132.7

Q ss_pred             eEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEe-CCccEEEEeeeCCCCCceeeE-EEecc
Q psy11529         23 QLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCS-ADRNAYVWTQNNDDKKWKPTL-VLLRI  100 (244)
Q Consensus        23 ~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~-~~~~~  100 (244)
                      .+++++.+++|++|++... +..+.+..+ .|.+.+..++|+|||++|++++ .|+.|++|++  ......... .....
T Consensus         6 v~v~~~~~~~I~v~~~~~~-~~l~~~~~~-~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i--~~~~~~~~~~~~~~~   81 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHE-GALTLTQVV-DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRI--APDDGALTFAAESAL   81 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTT-SCEEEEEEE-ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEE--CTTTCCEEEEEEEEC
T ss_pred             EEEECCCCCcEEEEEEcCC-CCeEEEEEE-cCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEE--eCCCCcEEEeeeccc
Confidence            3567778999999999752 222334444 4889999999999999986554 5899999995  443322222 22334


Q ss_pred             CcceEEEEECCCCCeEEEeeC-CCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEeeC-CCeEEEEEeee
Q psy11529        101 NRAATCVKWSPLENKFAAGSG-ARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGST-DFKVRVFSAYI  178 (244)
Q Consensus       101 ~~~v~~~~~~~~~~~l~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~-dg~i~i~d~~~  178 (244)
                      ...+..++|+|||++|++++. ++.+.+|+......  ........+...+.++.++|+++++++++. +..|.+|+...
T Consensus        82 ~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~  159 (333)
T d1ri6a_          82 PGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLP--VGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSD  159 (333)
T ss_dssp             SSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEE--EEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred             CCCceEEEEcCCCCEEeecccCCCceeeeccccccc--eecccccCCCccceEEEeeecceeeeccccccceeeEEEecc
Confidence            556788999999999998875 77899999887754  222233344567889999999998877764 45799999742


Q ss_pred             cccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEee-CCCcEEEEeCC
Q psy11529        179 KDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTS-HDGSINVRMSQ  240 (244)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~vwd~~  240 (244)
                      ....            ............   ......++|++++.+++... ..+...+|+..
T Consensus       160 ~~~~------------~~~~~~~~~~~~---g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~  207 (333)
T d1ri6a_         160 DGHL------------VAQDPAEVTTVE---GAGPRHMVFHPNEQYAYCVNELNSSVDVWELK  207 (333)
T ss_dssp             TSCE------------EEEEEEEEECST---TCCEEEEEECTTSSEEEEEETTTTEEEEEESS
T ss_pred             CCcc------------eeeeceeeeeec---CCCccEEEEeccceeEEeeccccCceEEEeec
Confidence            2110            000011111122   55678999999999876654 45667777754

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.81  E-value=3.2e-18  Score=126.47  Aligned_cols=145  Identities=12%  Similarity=0.003  Sum_probs=106.9

Q ss_pred             CeEEEecCCCeEEEeeeccCCCcceeeeeecc--CCCceEEEEeCCCCCeEE-EEeCCccEEEEeeeCCCCCceeeEEEe
Q psy11529         22 QQLAFTPNNQEVHLYQYEKAANDWSQLDVLDG--HDLKVTGIDWAPNTNRIV-TCSADRNAYVWTQNNDDKKWKPTLVLL   98 (244)
Q Consensus        22 ~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~-~~~~d~~i~iwd~~~~~~~~~~~~~~~   98 (244)
                      +++++++.|++|+|||+.+  .  +.+..+..  +...+.+++|+|||++++ +++.++.|.+||  ..+++........
T Consensus         2 ~~~vt~~~d~~v~v~D~~s--~--~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D--~~t~~~~~~~~~~   75 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEK--M--AVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKID--LVTGETLGRIDLS   75 (337)
T ss_dssp             EEEEEEETTTEEEEEETTT--T--EEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEE--TTTCCEEEEEECC
T ss_pred             eEEEEEcCCCEEEEEECCC--C--eEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEE--CCCCcEEEEEecC
Confidence            5789999999999999987  5  56666653  445678999999999874 567799999999  7888765444322


Q ss_pred             c---cCcceEEEEECCCCCeEEEeeC------------CCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEE
Q psy11529         99 R---INRAATCVKWSPLENKFAAGSG------------ARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLG  163 (244)
Q Consensus        99 ~---~~~~v~~~~~~~~~~~l~~~~~------------d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~  163 (244)
                      .   +...+..++|+|++++++++..            +..+.+||..+...    .... .....+..++|+|+|++++
T Consensus        76 ~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~----~~~~-~~~~~~~~~~~s~dg~~l~  150 (337)
T d1pbyb_          76 TPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSR----RKAF-EAPRQITMLAWARDGSKLY  150 (337)
T ss_dssp             BTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEE----EEEE-ECCSSCCCEEECTTSSCEE
T ss_pred             CCcccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeE----EEec-cccCCceEEEEcCCCCEEE
Confidence            1   1234567999999999888763            56778888877653    2222 2335678899999999999


Q ss_pred             EeeCCCeEEEEEeeec
Q psy11529        164 CGSTDFKVRVFSAYIK  179 (244)
Q Consensus       164 ~~~~dg~i~i~d~~~~  179 (244)
                      +++.+  +.+||....
T Consensus       151 ~~~~~--~~~~d~~~~  164 (337)
T d1pbyb_         151 GLGRD--LHVMDPEAG  164 (337)
T ss_dssp             EESSS--EEEEETTTT
T ss_pred             EEcCC--cceeeeecC
Confidence            88654  677887543

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.81  E-value=5.6e-17  Score=117.93  Aligned_cols=181  Identities=14%  Similarity=0.118  Sum_probs=134.2

Q ss_pred             EEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEE-EEeCCccEEEEeeeCCCCCceeeEEEeccCc
Q psy11529         24 LAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIV-TCSADRNAYVWTQNNDDKKWKPTLVLLRINR  102 (244)
Q Consensus        24 l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~  102 (244)
                      +++++.++.|.|||+.+  +  +.+.++.. ...+..++|+|+|++|+ +++.++.|.+||  +.+++....+  . ...
T Consensus         5 yV~~~~~~~v~v~D~~t--~--~~~~~i~~-g~~p~~va~spdG~~l~v~~~~~~~i~v~d--~~t~~~~~~~--~-~~~   74 (301)
T d1l0qa2           5 YIANSESDNISVIDVTS--N--KVTATIPV-GSNPMGAVISPDGTKVYVANAHSNDVSIID--TATNNVIATV--P-AGS   74 (301)
T ss_dssp             EEEETTTTEEEEEETTT--T--EEEEEEEC-SSSEEEEEECTTSSEEEEEEGGGTEEEEEE--TTTTEEEEEE--E-CSS
T ss_pred             EEEECCCCEEEEEECCC--C--eEEEEEEC-CCCceEEEEeCCCCEEEEEECCCCEEEEEE--CCCCceeeee--e-ccc
Confidence            34567889999999987  5  66667763 45678999999999875 566789999999  7777644333  2 344


Q ss_pred             ceEEEEECCCCCeEEE-eeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEE-EeeCCCeEEEEEeeecc
Q psy11529        103 AATCVKWSPLENKFAA-GSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLG-CGSTDFKVRVFSAYIKD  180 (244)
Q Consensus       103 ~v~~~~~~~~~~~l~~-~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~-~~~~dg~i~i~d~~~~~  180 (244)
                      .+..++|++++..+++ +..++.+.+|+....+.    .... .+......+.|+|+++.++ ++..++.+.+|+.    
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~-~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~----  145 (301)
T d1l0qa2          75 SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTV----AGTV-KTGKSPLGLALSPDGKKLYVTNNGDKTVSVINT----  145 (301)
T ss_dssp             SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE----EEEE-ECSSSEEEEEECTTSSEEEEEETTTTEEEEEET----
T ss_pred             cccccccccccccccccccccceeeeccccccee----eeec-cccccceEEEeecCCCeeeeeeccccceeeeec----
Confidence            6789999999887655 55678899999887754    2222 2335678899999998765 4556788999998    


Q ss_pred             cccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCC-CcEEEEeCCC
Q psy11529        181 IESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHD-GSINVRMSQQ  241 (244)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-g~i~vwd~~~  241 (244)
                                    .+.+....+..    ...+..++++|+++.+++++.+ +.+.+|+...
T Consensus       146 --------------~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (301)
T d1l0qa2         146 --------------VTKAVINTVSV----GRSPKGIAVTPDGTKVYVANFDSMSISVIDTVT  189 (301)
T ss_dssp             --------------TTTEEEEEEEC----CSSEEEEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred             --------------cccceeeeccc----CCCceEEEeeccccceeeecccccccccccccc
Confidence                          56666776665    4568899999999988877755 5666776654

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.80  E-value=5.3e-18  Score=126.48  Aligned_cols=221  Identities=13%  Similarity=0.034  Sum_probs=141.2

Q ss_pred             CceEEEEEcCCCCeEEEec-----CCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEe----------
Q psy11529         10 NPVTTHAWNNTRQQLAFTP-----NNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCS----------   74 (244)
Q Consensus        10 ~~v~~~~~~~~~~~l~~~~-----~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------   74 (244)
                      +|+.-.+.+||++.+++..     .++.|.+||..+  +  +.+.++..+..+  .++|+|||++|++++          
T Consensus         2 ~p~~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~t--g--~~~~~~~~g~~~--~~a~SpDg~~l~v~~~~~~~~~~g~   75 (355)
T d2bbkh_           2 EPRILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEA--G--RVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGE   75 (355)
T ss_dssp             CCCBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTT--T--EEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEE
T ss_pred             CCcEeEeeCCCCCEEEEEecccCCCcCeEEEEECCC--C--cEEEEEECCCCC--ceEEcCCCCEEEEEeCCCccccccC
Confidence            3455557789999987652     456899999977  5  667777655444  799999999887643          


Q ss_pred             CCccEEEEeeeCCCCCceeeEEEecc-----CcceEEEEECCCCCeEEEee--CCCeEEEEEeecCCCceEEEe------
Q psy11529         75 ADRNAYVWTQNNDDKKWKPTLVLLRI-----NRAATCVKWSPLENKFAAGS--GARLISVCYFESENDWWVAKH------  141 (244)
Q Consensus        75 ~d~~i~iwd~~~~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~--~d~~i~i~d~~~~~~~~~~~~------  141 (244)
                      .|+.|.+||  ..+++..........     ......++|+|+++.++++.  .+..+.+|+..+.+.......      
T Consensus        76 ~d~~v~v~D--~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (355)
T d2bbkh_          76 RTDYVEVFD--PVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHI  153 (355)
T ss_dssp             EEEEEEEEC--TTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEE
T ss_pred             CCCEEEEEE--CCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceE
Confidence            478999999  788876554433211     12345689999999887764  456788888766543111000      


Q ss_pred             ----------e-------------------------ecCCCCceeEEEecCCCCEEEEeeCCCeEEEEEeeecccccCCC
Q psy11529        142 ----------I-------------------------KKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQ  186 (244)
Q Consensus       142 ----------~-------------------------~~~~~~~v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  186 (244)
                                .                         ...+...+....+.+++..++.++.++.+++|++..........
T Consensus       154 ~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  233 (355)
T d2bbkh_         154 FPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPA  233 (355)
T ss_dssp             EEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCC
T ss_pred             eecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEec
Confidence                      0                         00001123345666777788888899999999986443211000


Q ss_pred             ----------------C-CC-----CC------------------------ccccccceeEEecCCCCCCCCeEEEEEec
Q psy11529        187 ----------------S-TN-----WG------------------------SKSTLGNCLVELNNSSSGGGWIHSVAFSK  220 (244)
Q Consensus       187 ----------------~-~~-----~~------------------------~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  220 (244)
                                      . ..     .+                        -...+++.+..+..    ...+.+++|+|
T Consensus       234 ~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~----~~~~~~~a~sp  309 (355)
T d2bbkh_         234 VEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM----GHEIDSINVSQ  309 (355)
T ss_dssp             EESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE----EEEECEEEECC
T ss_pred             cCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEecC----CCCEEEEEEcC
Confidence                            0 00     00                        01223444444443    44578999999


Q ss_pred             CCC--EEEEeeCCCcEEEEeCCCC
Q psy11529        221 DGN--KLCWTSHDGSINVRMSQQV  242 (244)
Q Consensus       221 ~~~--~l~~~~~dg~i~vwd~~~~  242 (244)
                      ||+  ++++++.|+.|++||+++.
T Consensus       310 DG~~~l~v~~~~d~~i~v~D~~tg  333 (355)
T d2bbkh_         310 DEKPLLYALSTGDKTLYIHDAESG  333 (355)
T ss_dssp             SSSCEEEEEETTTTEEEEEETTTC
T ss_pred             CCCeEEEEEECCCCEEEEEECCCC
Confidence            998  4566778999999999864

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.66  E-value=3.9e-15  Score=111.59  Aligned_cols=200  Identities=11%  Similarity=-0.011  Sum_probs=121.4

Q ss_pred             EEEEEcCCCCeEEEec----------CCCeEEEeeeccCCCcceeeeeeccCC-------CceEEEEeCCCCCeEEEEe-
Q psy11529         13 TTHAWNNTRQQLAFTP----------NNQEVHLYQYEKAANDWSQLDVLDGHD-------LKVTGIDWAPNTNRIVTCS-   74 (244)
Q Consensus        13 ~~~~~~~~~~~l~~~~----------~d~~v~v~~~~~~~~~~~~~~~~~~~~-------~~v~~~~~~~~~~~l~~~~-   74 (244)
                      ..++|+|||+.|++++          .++.|++||..+  .  +....+..+.       .....++|+|||++++++. 
T Consensus        68 ~~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t--~--~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~  143 (368)
T d1mdah_          68 SLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVT--F--LPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLF  143 (368)
T ss_dssp             CEEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTT--C--CEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEEC
T ss_pred             CcceECCCCCEEEEEcccCccccccccCCeEEEEECCC--C--cEeeeecCCccceecccCCccceEECCCCCEEEEEeC
Confidence            3589999999988753          367899999977  4  4444443322       1234689999999998775 


Q ss_pred             CCccEEEEeeeCCCCCceeeEEEecc-----CcceEEEEECCCCCeEEEeeC----------------------------
Q psy11529         75 ADRNAYVWTQNNDDKKWKPTLVLLRI-----NRAATCVKWSPLENKFAAGSG----------------------------  121 (244)
Q Consensus        75 ~d~~i~iwd~~~~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~~----------------------------  121 (244)
                      .++.+.+||  +.+++..........     ......+.++++++.++....                            
T Consensus       144 ~~~~v~~~d--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (368)
T d1mdah_         144 GSSAAAGLS--VPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANY  221 (368)
T ss_dssp             SSSCEEEEE--ETTTEEEEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETT
T ss_pred             CCCeEEEEE--CCCCcEeEEeeccCcceEccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeeccccc
Confidence            579999999  677664433322111     112233444555444333222                            


Q ss_pred             --------CCeEEEEEeecCCCceEEEeeecCC----------CCceeEEEecCCCCEEEEeeCC---------CeEEEE
Q psy11529        122 --------ARLISVCYFESENDWWVAKHIKKPI----------KSTITCLDWHPNNHLLGCGSTD---------FKVRVF  174 (244)
Q Consensus       122 --------d~~i~i~d~~~~~~~~~~~~~~~~~----------~~~v~~~~~~p~~~~l~~~~~d---------g~i~i~  174 (244)
                              .+.+.++++......  ........          ......++++|++..++....+         ..|.+|
T Consensus       222 ~g~~~~~~~~~v~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~  299 (368)
T d1mdah_         222 PGMLVWAVASSILQGDIPAAGAT--MKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSV  299 (368)
T ss_dssp             TTEEEECBSSCCEEEECCSSCCE--EECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEE
T ss_pred             CcEEEEecCCCEEEEeecCCceE--EEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEE
Confidence                    122333343333220  00000000          1123457788888766554322         258889


Q ss_pred             EeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCC-E-EEEeeCCCcEEEEeCCCC
Q psy11529        175 SAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGN-K-LCWTSHDGSINVRMSQQV  242 (244)
Q Consensus       175 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~-l~~~~~dg~i~vwd~~~~  242 (244)
                      |.                  .+++.+..+..    ...+..++|+|||+ + ++++..|+.|++||..+.
T Consensus       300 D~------------------~t~~~~~~~~~----~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tg  347 (368)
T d1mdah_         300 TA------------------SVGQTSGPISN----GHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASD  347 (368)
T ss_dssp             ES------------------SSCCEEECCEE----EEEECEEEECCSSSCEEEEEETTTTEEEEEESSSC
T ss_pred             EC------------------CCCcEeEEecC----CCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCC
Confidence            98                  66777776664    56788999999997 3 456677899999998764

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.62  E-value=5.4e-15  Score=109.22  Aligned_cols=157  Identities=10%  Similarity=-0.016  Sum_probs=105.9

Q ss_pred             EEeCCCCCeEEEEeCCccEEEEeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEE-eeCCCeEEEEEeecCCCceEE
Q psy11529         61 IDWAPNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAA-GSGARLISVCYFESENDWWVA  139 (244)
Q Consensus        61 ~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d~~i~i~d~~~~~~~~~~  139 (244)
                      ++|++++++|++++.+++|.+||  +.+++....+.+ .+...+.+++|+|||+++++ +..++.|.+||+.+.+.....
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D--~~t~~~~~t~~~-~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~   78 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVD--VASDTVYKSCVM-PDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHA   78 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEE--TTTTEEEEEEEC-SSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEE--CCCCCEEEEEEc-CCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeee
Confidence            57899999999999999999999  788875444432 34556789999999998755 457899999999988652211


Q ss_pred             EeeecC--CCCceeEEEecCCCCEEEEee------------CCCeEEEEEeeecccccCCCCCCCCccccccceeEEecC
Q psy11529        140 KHIKKP--IKSTITCLDWHPNNHLLGCGS------------TDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNN  205 (244)
Q Consensus       140 ~~~~~~--~~~~v~~~~~~p~~~~l~~~~------------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (244)
                      ......  ....+..++|+|||+++++++            .++.+.+||..                  +++....+..
T Consensus        79 ~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~------------------~~~~~~~~~~  140 (346)
T d1jmxb_          79 NLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTA------------------DGLEAKPVRT  140 (346)
T ss_dssp             ESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGG------------------GGGGBCCSEE
T ss_pred             cccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecc------------------cceeeeEEEe
Confidence            111111  112466899999999887765            36678888873                  2322222211


Q ss_pred             CCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCCC
Q psy11529        206 SSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQV  242 (244)
Q Consensus       206 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~  242 (244)
                      +.. ...+..+.+++++++++++   +.+.+|++.+.
T Consensus       141 ~~~-~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~  173 (346)
T d1jmxb_         141 FPM-PRQVYLMRAADDGSLYVAG---PDIYKMDVKTG  173 (346)
T ss_dssp             EEC-CSSCCCEEECTTSCEEEES---SSEEEECTTTC
T ss_pred             eec-cCceEEEEecCCCEEEEeC---CcceEEEccCC
Confidence            100 3455667778888766653   45788887653

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.58  E-value=5.7e-14  Score=104.26  Aligned_cols=185  Identities=10%  Similarity=0.036  Sum_probs=114.2

Q ss_pred             CceEEEEEcCCCCeEEEec----------CCCeEEEeeeccCCCcceeeeeeccCC-------CceEEEEeCCCCCeEEE
Q psy11529         10 NPVTTHAWNNTRQQLAFTP----------NNQEVHLYQYEKAANDWSQLDVLDGHD-------LKVTGIDWAPNTNRIVT   72 (244)
Q Consensus        10 ~~v~~~~~~~~~~~l~~~~----------~d~~v~v~~~~~~~~~~~~~~~~~~~~-------~~v~~~~~~~~~~~l~~   72 (244)
                      +....++|+|||++|++++          .++.|++||..+  +  +....+..+.       .....++|+|++++++.
T Consensus        47 g~~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t--~--~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v  122 (355)
T d2bbkh_          47 GFLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVT--L--LPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLF  122 (355)
T ss_dssp             CSSCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTT--C--CEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEE
T ss_pred             CCCCceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCC--C--CEEEEEecCCcceeecCCCCceEEEecCCCeeEE
Confidence            3344789999999887653          368999999987  4  4444433221       22356889999998876


Q ss_pred             Ee--CCccEEEEeeeCCCCCceeeEEEe-------------------------------------------ccCcceEEE
Q psy11529         73 CS--ADRNAYVWTQNNDDKKWKPTLVLL-------------------------------------------RINRAATCV  107 (244)
Q Consensus        73 ~~--~d~~i~iwd~~~~~~~~~~~~~~~-------------------------------------------~~~~~v~~~  107 (244)
                      +.  .+..+.+|+  ..+++........                                           .+...+...
T Consensus       123 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (355)
T d2bbkh_         123 YQFSPAPAVGVVD--LEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHP  200 (355)
T ss_dssp             EECSSSCEEEEEE--TTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCC
T ss_pred             ecCCCCceeeeee--cCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccceecceeeec
Confidence            64  456788898  5555432211100                                           000112223


Q ss_pred             EECCCCCeEEEeeCCCeEEEEEeecCCCce----------------------------------E---------------
Q psy11529        108 KWSPLENKFAAGSGARLISVCYFESENDWW----------------------------------V---------------  138 (244)
Q Consensus       108 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~----------------------------------~---------------  138 (244)
                      .+.+++..++.++.++.+.+|++..+....                                  .               
T Consensus       201 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~  280 (355)
T d2bbkh_         201 AYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASR  280 (355)
T ss_dssp             EEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEE
T ss_pred             cccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCC
Confidence            455555566777778888888765543200                                  0               


Q ss_pred             EEeee----------cCCCCceeEEEecCCCC--EEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCC
Q psy11529        139 AKHIK----------KPIKSTITCLDWHPNNH--LLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNS  206 (244)
Q Consensus       139 ~~~~~----------~~~~~~v~~~~~~p~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (244)
                      .....          ......+.+++|+|||+  +++++..|+.|++||+                  .+++.+.++..+
T Consensus       281 ~v~v~d~~t~~~~~~~~~~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~------------------~tg~~~~~i~~~  342 (355)
T d2bbkh_         281 FVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDA------------------ESGEELRSVNQL  342 (355)
T ss_dssp             EEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEETTTTEEEEEET------------------TTCCEEEEECCC
T ss_pred             eEEEEeCCCCcEEEEecCCCCEEEEEEcCCCCeEEEEEECCCCEEEEEEC------------------CCCCEEEEEeCc
Confidence            00000          01123577899999997  4566778999999999                  788888888765


Q ss_pred             CCCCCCeEEEEEecC
Q psy11529        207 SSGGGWIHSVAFSKD  221 (244)
Q Consensus       207 ~~~~~~v~~~~~s~~  221 (244)
                         ......+.+.++
T Consensus       343 ---G~~p~~i~~~d~  354 (355)
T d2bbkh_         343 ---GHGPQVITTADM  354 (355)
T ss_dssp             ---CSSCCEEECCCC
T ss_pred             ---CCCccEEEeCCC
Confidence               555555555443

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.57  E-value=9.6e-14  Score=107.25  Aligned_cols=105  Identities=14%  Similarity=0.140  Sum_probs=79.5

Q ss_pred             CCceEEEEEcCCCCeEEEecC---------CCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccE
Q psy11529          9 INPVTTHAWNNTRQQLAFTPN---------NQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNA   79 (244)
Q Consensus         9 ~~~v~~~~~~~~~~~l~~~~~---------d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i   79 (244)
                      ...|.++.|||||++|++++.         ++.+.|||+.+     .....+..+...+..+.|||||+++|... ++.+
T Consensus        61 ~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~-----~~~~~l~~~~~~~~~~~~SPDG~~ia~~~-~~~l  134 (470)
T d2bgra1          61 GHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNK-----RQLITEERIPNNTQWVTWSPVGHKLAYVW-NNDI  134 (470)
T ss_dssp             SSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTT-----TEECCSSCCCTTEEEEEECSSTTCEEEEE-TTEE
T ss_pred             cCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCC-----CcccccccCCccccccccccCcceeeEee-cccc
Confidence            467899999999999998743         56789999988     45667888899999999999999999864 6789


Q ss_pred             EEEeeeCCCCCceeeEEE-------ec---------cCcceEEEEECCCCCeEEEeeC
Q psy11529         80 YVWTQNNDDKKWKPTLVL-------LR---------INRAATCVKWSPLENKFAAGSG  121 (244)
Q Consensus        80 ~iwd~~~~~~~~~~~~~~-------~~---------~~~~v~~~~~~~~~~~l~~~~~  121 (244)
                      .+|+  ..+++.......       .+         ..+....+.|+|||++|++...
T Consensus       135 ~~~~--~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~  190 (470)
T d2bgra1         135 YVKI--EPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQF  190 (470)
T ss_dssp             EEES--STTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEE
T ss_pred             eEEE--CCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECCCCCccceeEe
Confidence            9999  666653322110       00         1223456889999999988754

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.53  E-value=2e-11  Score=86.90  Aligned_cols=203  Identities=10%  Similarity=0.094  Sum_probs=123.2

Q ss_pred             CCCceEEEEEcCCCCeEEEecCC---CeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeC-CccEEEEe
Q psy11529          8 GINPVTTHAWNNTRQQLAFTPNN---QEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSA-DRNAYVWT   83 (244)
Q Consensus         8 ~~~~v~~~~~~~~~~~l~~~~~d---~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~iwd   83 (244)
                      +...+...+|||||+.||.....   ..+.+.+..+     .....+..+.+......|+|+|+.++.... ++...++.
T Consensus        37 ~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~  111 (269)
T d2hqsa1          37 SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLAN-----GAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYV  111 (269)
T ss_dssp             ESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTT-----CCEEEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEE
T ss_pred             CCCceeeeEECCCCCEEEEEEeeccCcceeeeeccc-----CceeEEeeeecccccceecCCCCeeeEeeecCCccceee
Confidence            36778899999999999977443   2466666655     334455557788889999999998886553 33333333


Q ss_pred             eeCCCCCceeeEEEeccCcceEEEEECCCCCeEEE-eeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEE
Q psy11529         84 QNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAA-GSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLL  162 (244)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l  162 (244)
                      .......   ...............+++++..++. ...++...+|.......   ................|+|+++.+
T Consensus       112 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~---~~~~~~~~~~~~~~~~~spdg~~~  185 (269)
T d2hqsa1         112 MDLASGQ---IRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGG---APQRITWEGSQNQDADVSSDGKFM  185 (269)
T ss_dssp             EETTTCC---EEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSS---CCEECCCSSSEEEEEEECTTSSEE
T ss_pred             ccccccc---ceeeeeccccccccccccccccceecccccCCceEeeeecccc---cceeeeccccccccccccccccee
Confidence            1122222   2222334444556677777666444 44455555555544433   122333345677888999999988


Q ss_pred             EEeeCC-CeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCC---CcEEEEe
Q psy11529        163 GCGSTD-FKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHD---GSINVRM  238 (244)
Q Consensus       163 ~~~~~d-g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~vwd  238 (244)
                      +..+.+ +...+|...                 ......... .+   ........|||||++|+..+..   ..|.+++
T Consensus       186 ~~~~~~~~~~~i~~~~-----------------~~~~~~~~~-~~---~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~  244 (269)
T d2hqsa1         186 VMVSSNGGQQHIAKQD-----------------LATGGVQVL-SS---TFLDETPSLAPNGTMVIYSSSQGMGSVLNLVS  244 (269)
T ss_dssp             EEEEECSSCEEEEEEE-----------------TTTCCEEEC-CC---SSSCEEEEECTTSSEEEEEEEETTEEEEEEEE
T ss_pred             EEEeecCCceeeeEee-----------------cccccceEe-ec---CccccceEECCCCCEEEEEEcCCCCcEEEEEE
Confidence            776654 444444442                 112222222 23   5567788999999988765543   3688888


Q ss_pred             CCCC
Q psy11529        239 SQQV  242 (244)
Q Consensus       239 ~~~~  242 (244)
                      +...
T Consensus       245 ~dg~  248 (269)
T d2hqsa1         245 TDGR  248 (269)
T ss_dssp             TTSC
T ss_pred             CCCC
Confidence            8643

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.50  E-value=6.3e-11  Score=84.99  Aligned_cols=202  Identities=14%  Similarity=0.120  Sum_probs=129.5

Q ss_pred             ceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeee---------------------------------------
Q psy11529         11 PVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVL---------------------------------------   51 (244)
Q Consensus        11 ~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~---------------------------------------   51 (244)
                      .-..++++++|+.+++-..++.|++|+.++     ..+..+                                       
T Consensus        24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~G-----~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~   98 (279)
T d1q7fa_          24 EPSGVAVNAQNDIIVADTNNHRIQIFDKEG-----RFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIY   98 (279)
T ss_dssp             CEEEEEECTTCCEEEEEGGGTEEEEECTTS-----CEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEE
T ss_pred             CccEEEEcCCCCEEEEECCCCEEEEEeCCC-----CEEEEecccCCCcccccccccccccccccccceeccCCccccccc
Confidence            357899999999887766678888888643     111000                                       


Q ss_pred             c-----------cCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEee
Q psy11529         52 D-----------GHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGS  120 (244)
Q Consensus        52 ~-----------~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  120 (244)
                      .           ........+++.+++.++++....+.+.+++   .+++.........+......+++.++++.+++..
T Consensus        99 ~~~g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~---~~g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~  175 (279)
T d1q7fa_          99 NQYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFD---QNGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDN  175 (279)
T ss_dssp             CTTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEEC---TTSCEEEEEECTTTCSSEEEEEECSSSEEEEEEG
T ss_pred             cccccceeecCCCcccccceeccccCCcEEEEeeccceeeEec---cCCceeecccccccccccceeeeccceeEEeeec
Confidence            0           0112234455555666555555455566665   3344333332233456678899999998888888


Q ss_pred             CCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEeeC-CCeEEEEEeeecccccCCCCCCCCccccccce
Q psy11529        121 GARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGST-DFKVRVFSAYIKDIESAPQSTNWGSKSTLGNC  199 (244)
Q Consensus       121 ~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~  199 (244)
                      ..+.|++||......   ...-..+.......+++.|+|+++++-.. ++.|.+|+                   ..++.
T Consensus       176 ~~~~V~~~d~~G~~~---~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~-------------------~~G~~  233 (279)
T d1q7fa_         176 RAHCVKVFNYEGQYL---RQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFT-------------------QDGQL  233 (279)
T ss_dssp             GGTEEEEEETTCCEE---EEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEEC-------------------TTSCE
T ss_pred             cccceeeeecCCcee---eeecccccccCCcccccccCCeEEEEECCCCcEEEEEC-------------------CCCCE
Confidence            888999988654321   11111223345789999999997776543 45799998                   35776


Q ss_pred             eEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCCCCC
Q psy11529        200 LVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQVLP  244 (244)
Q Consensus       200 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~p  244 (244)
                      +..+..... ......+++.|||.++++ +.+..|++|....+-|
T Consensus       234 ~~~~~~~~~-~~~p~~vav~~dG~l~V~-~~n~~v~~fr~~~~~~  276 (279)
T d1q7fa_         234 ISALESKVK-HAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQLAP  276 (279)
T ss_dssp             EEEEEESSC-CSCEEEEEEETTTEEEEE-ETTTEEEEEECSCCCC
T ss_pred             EEEEeCCCC-CCCEeEEEEeCCCcEEEE-eCCCeEEEEEeeeecC
Confidence            666643210 345789999999976554 5789999999998866

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.50  E-value=1.3e-12  Score=98.40  Aligned_cols=203  Identities=10%  Similarity=-0.011  Sum_probs=121.3

Q ss_pred             EEEecCCCeEEEeeeccCCCcceeeeeec------------------------------cCCCceEEEEeCCCCCeEEEE
Q psy11529         24 LAFTPNNQEVHLYQYEKAANDWSQLDVLD------------------------------GHDLKVTGIDWAPNTNRIVTC   73 (244)
Q Consensus        24 l~~~~~d~~v~v~~~~~~~~~~~~~~~~~------------------------------~~~~~v~~~~~~~~~~~l~~~   73 (244)
                      +++++.+|+|+||++..  .  +.++++.                              .|........++|||++|+..
T Consensus        14 f~Sgg~sG~V~V~dlpS--~--r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~   89 (441)
T d1qnia2          14 FWSGGHQGEVRVLGVPS--M--RELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFIN   89 (441)
T ss_dssp             EEECBTTCCEEEEEETT--T--EEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEE
T ss_pred             EEeCCCCCcEEEEeCCC--C--cEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEE
Confidence            66778899999999965  3  3333321                              122344555567899998666


Q ss_pred             e-CCccEEEEeeeCCCCCceeeEEEeccCcceEEEEECCCCCe--EEEeeCCC-----------------eEEEEEeecC
Q psy11529         74 S-ADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENK--FAAGSGAR-----------------LISVCYFESE  133 (244)
Q Consensus        74 ~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--l~~~~~d~-----------------~i~i~d~~~~  133 (244)
                      . .+++|.++|  +.+.+...... ......+..++|+|+++.  ++..+.+.                 .+..+|..+.
T Consensus        90 d~~~~rVavID--l~t~k~~~ii~-iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~  166 (441)
T d1qnia2          90 DKANTRVARIR--LDIMKTDKITH-IPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETM  166 (441)
T ss_dssp             ETTTTEEEEEE--TTTTEEEEEEE-CTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTC
T ss_pred             cCCCCEEEEEE--CCCCcEeeEEe-cCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccc
Confidence            4 588999999  78877554443 234577899999999885  43333322                 1233454444


Q ss_pred             CCceEEEeeecCCCCceeEEEecCCCCEEEEeeCCC---------------eEEEEEeeecccccCCC-CCCCC---c--
Q psy11529        134 NDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDF---------------KVRVFSAYIKDIESAPQ-STNWG---S--  192 (244)
Q Consensus       134 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg---------------~i~i~d~~~~~~~~~~~-~~~~~---~--  192 (244)
                      +.   ..+..  ..+....+.++|+|+++++.+.+.               .|.+.+........+.. ....+   .  
T Consensus       167 ~v---~~qI~--v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~v  241 (441)
T d1qnia2         167 DV---AWQVI--VDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPV  241 (441)
T ss_dssp             SE---EEEEE--ESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCE
T ss_pred             ee---eEEEe--cCCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEE
Confidence            32   11221  224678899999999988877543               23333321110000000 00000   0  


Q ss_pred             --cccccceeEEecCCCCCCCCeEEEEEecCCCEEE-EeeCCCcEEEEeCCCC
Q psy11529        193 --KSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLC-WTSHDGSINVRMSQQV  242 (244)
Q Consensus       193 --~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~i~vwd~~~~  242 (244)
                        .....+.+..+..    ......+.++|||++++ ++..+++|.|||++++
T Consensus       242 vd~~~~~~v~~~IPv----gksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~  290 (441)
T d1qnia2         242 VDGRGESEFTRYIPV----PKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKL  290 (441)
T ss_dssp             EECSSSCSSEEEECC----BSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGH
T ss_pred             EEcccCCceEEEEeC----CCCccCceECCCCCEEEEeCCcCCcEEEEEeehh
Confidence              1122344555555    34467899999999875 5668999999998763

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.48  E-value=1.8e-11  Score=91.27  Aligned_cols=179  Identities=6%  Similarity=-0.072  Sum_probs=117.9

Q ss_pred             CceEEEEEcCCCCeE-EEecCCCeEEEeeeccCCCcceeeeeecc------CCCceEEEEeCCCCCeEEEEeCCccEEEE
Q psy11529         10 NPVTTHAWNNTRQQL-AFTPNNQEVHLYQYEKAANDWSQLDVLDG------HDLKVTGIDWAPNTNRIVTCSADRNAYVW   82 (244)
Q Consensus        10 ~~v~~~~~~~~~~~l-~~~~~d~~v~v~~~~~~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~d~~i~iw   82 (244)
                      ....++.++|+++.+ ++.+.|+.+.+|+...  .  ........      .......+.+++++.++ ..+.++.+.+|
T Consensus       165 ~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~  239 (373)
T d2madh_         165 SSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAG--G--AAGAGLVGAMLTAAQNLLTQPAQANKSGRIV-WPVYSGKILQA  239 (373)
T ss_pred             ccceeEEEecCCCcEEEEEcCCCeEEEEEcCC--c--eeeEEEeeeccccCccceeeeEEECCCceEE-EecCCceEEEE
Confidence            445678899998754 5778899999999876  3  22222221      22233455666666544 55678899999


Q ss_pred             eeeCCCCCceeeEEEec----------cCcceEEEEECCCCCeEE----------EeeCCCeEEEEEeecCCCceEEEee
Q psy11529         83 TQNNDDKKWKPTLVLLR----------INRAATCVKWSPLENKFA----------AGSGARLISVCYFESENDWWVAKHI  142 (244)
Q Consensus        83 d~~~~~~~~~~~~~~~~----------~~~~v~~~~~~~~~~~l~----------~~~~d~~i~i~d~~~~~~~~~~~~~  142 (244)
                      +  ..............          .......++++|++..++          ....++.+.+||..+++.   ..  
T Consensus       240 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~---~~--  312 (373)
T d2madh_         240 D--ISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQT---SS--  312 (373)
T ss_pred             E--cCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcE---EE--
Confidence            8  55544222221111          122334556666665544          445567889999888865   22  


Q ss_pred             ecCCCCceeEEEecCCCC--EEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEec
Q psy11529        143 KKPIKSTITCLDWHPNNH--LLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSK  220 (244)
Q Consensus       143 ~~~~~~~v~~~~~~p~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  220 (244)
                      ...+...+..++|+|||+  ++++++.|+.|++||+                  .+++.+.++..+   ....+.+++.+
T Consensus       313 ~~~~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~------------------~tg~~~~~~~~~---g~~P~~l~~~~  371 (373)
T d2madh_         313 QISLGHDVDAISVAQDGGPDLYALSAGTEVLHIYDA------------------GAGDQDQSTVEL---GSGPQVLSVMN  371 (373)
T ss_pred             EecCCCCeeEEEECCCCCEEEEEEeCCCCeEEEEEC------------------CCCCEEEEECCC---CCCCcEEEEec
Confidence            223456789999999998  4567889999999999                  789999999877   67777777654


Q ss_pred             C
Q psy11529        221 D  221 (244)
Q Consensus       221 ~  221 (244)
                      +
T Consensus       372 ~  372 (373)
T d2madh_         372 E  372 (373)
T ss_pred             C
Confidence            3

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.47  E-value=4.5e-13  Score=103.43  Aligned_cols=150  Identities=16%  Similarity=0.211  Sum_probs=106.7

Q ss_pred             EEEEcCCCCeEEEecCCCeEEEeeeccCCCcceee---eeeccCCCceEEEEeCCCCCeEEEEeC---------CccEEE
Q psy11529         14 THAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQL---DVLDGHDLKVTGIDWAPNTNRIVTCSA---------DRNAYV   81 (244)
Q Consensus        14 ~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~~~~~---------d~~i~i   81 (244)
                      .+.|.++++++..  .++.+.+||+.+  +....+   ..+..|...|.++.|||||++|+.++.         ++.+.+
T Consensus        21 ~~~W~~d~~~~~~--~~~~~~~~~~~t--~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l   96 (470)
T d2bgra1          21 SLRWISDHEYLYK--QENNILVFNAEY--GNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDI   96 (470)
T ss_dssp             CCEECSSSEEEEE--SSSCEEEEETTT--CCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEE
T ss_pred             CCEeCCCCEEEEE--cCCcEEEEECCC--CCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEE
Confidence            5789999987764  468899999987  421211   134456678999999999999998753         567889


Q ss_pred             EeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecC----------------
Q psy11529         82 WTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKP----------------  145 (244)
Q Consensus        82 wd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~----------------  145 (244)
                      ||  +.+++.   ..+..+...+..+.|+|||+.+|... ++.+.+|+...+..   .......                
T Consensus        97 ~d--~~~~~~---~~l~~~~~~~~~~~~SPDG~~ia~~~-~~~l~~~~~~~g~~---~~~t~~~~~~~~~~g~~d~~~~~  167 (470)
T d2bgra1          97 YD--LNKRQL---ITEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPS---YRITWTGKEDIIYNGITDWVYEE  167 (470)
T ss_dssp             EE--TTTTEE---CCSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCC---EECCSCCBTTTEEESBCCHHHHH
T ss_pred             EE--CCCCcc---cccccCCccccccccccCcceeeEee-cccceEEECCCCce---eeeeeccCCCcccccccceeeee
Confidence            99  777763   23456778899999999999999964 67799998877764   1111111                


Q ss_pred             -CCCceeEEEecCCCCEEEEeeCCC-eEEEEEe
Q psy11529        146 -IKSTITCLDWHPNNHLLGCGSTDF-KVRVFSA  176 (244)
Q Consensus       146 -~~~~v~~~~~~p~~~~l~~~~~dg-~i~i~d~  176 (244)
                       ..+....+.|+|||+.|+....|. .+..|++
T Consensus       168 ~~~~~~~~~~wSPDGk~ia~~~~d~~~v~~~~~  200 (470)
T d2bgra1         168 EVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEY  200 (470)
T ss_dssp             HTSSSSBCEEECTTSSEEEEEEEECTTCCEEEE
T ss_pred             eecCCccccEECCCCCccceeEecCCcCceEEE
Confidence             123346688999999999876543 3555544

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.45  E-value=1.5e-10  Score=86.12  Aligned_cols=170  Identities=11%  Similarity=0.014  Sum_probs=105.1

Q ss_pred             CceEEEEeCCCCCeEEEEeC-CccEEEEeeeCCCCCceeeEEE--eccCcceEEEEECCCCCeEEEee-CCCeEEEEEee
Q psy11529         56 LKVTGIDWAPNTNRIVTCSA-DRNAYVWTQNNDDKKWKPTLVL--LRINRAATCVKWSPLENKFAAGS-GARLISVCYFE  131 (244)
Q Consensus        56 ~~v~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~i~d~~  131 (244)
                      ..+.++.|+|+|++++++.. ...|.+|++ ..++........  .......+.++|+|+++++++.. .+++|.+|+++
T Consensus       145 ~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~-~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~  223 (365)
T d1jofa_         145 TGIHGMVFDPTETYLYSADLTANKLWTHRK-LASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVID  223 (365)
T ss_dssp             CCEEEEEECTTSSEEEEEETTTTEEEEEEE-CTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             CcceEEEECCCCCEEEEeeCCCCEEEEEEc-cCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEec
Confidence            34789999999998887754 457888874 233332222211  12345789999999999886655 48899999998


Q ss_pred             cCCCceEEEeeec---------------CCCCceeEEEecCCCCEEEEeeC------CCeEEEEEeeecccccCCCCCCC
Q psy11529        132 SENDWWVAKHIKK---------------PIKSTITCLDWHPNNHLLGCGST------DFKVRVFSAYIKDIESAPQSTNW  190 (244)
Q Consensus       132 ~~~~~~~~~~~~~---------------~~~~~v~~~~~~p~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~  190 (244)
                      ..+..........               ........+.++|||++|+++..      .+.|..|++......        
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~--------  295 (365)
T d1jofa_         224 PATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSI--------  295 (365)
T ss_dssp             TTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCE--------
T ss_pred             CCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCce--------
Confidence            7654221111100               11234567899999998887642      223666766311000        


Q ss_pred             CccccccceeEEecCCCCCCCCeEEEEEec-CCCEEEEe-eCCCcEEEEeCCC
Q psy11529        191 GSKSTLGNCLVELNNSSSGGGWIHSVAFSK-DGNKLCWT-SHDGSINVRMSQQ  241 (244)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~-~~dg~i~vwd~~~  241 (244)
                          .....+......   ......++++| +|++|+++ ..++.|.+|+++.
T Consensus       296 ----~~~~~~~~~~~~---G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~  341 (365)
T d1jofa_         296 ----EKQLFLSPTPTS---GGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKD  341 (365)
T ss_dssp             ----EEEEEEEECSSC---CTTCCCEEECTTCTTEEEEECSSSCEEEEEEEET
T ss_pred             ----eeEeEeeEEEcC---CCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeC
Confidence                000011111222   45567899998 89977666 4678999998653

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.44  E-value=1.1e-10  Score=84.73  Aligned_cols=204  Identities=13%  Similarity=-0.003  Sum_probs=132.1

Q ss_pred             CceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCCCC
Q psy11529         10 NPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDK   89 (244)
Q Consensus        10 ~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~   89 (244)
                      ..+..++++|||+++++...+++|+.++..+     + ...+......+.+++|+++|+++++...++.+..++.....+
T Consensus        28 ~~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g-----~-~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~  101 (302)
T d2p4oa1          28 TFLENLASAPDGTIFVTNHEVGEIVSITPDG-----N-QQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDG  101 (302)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTC-----C-EEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTS
T ss_pred             CCcCCEEECCCCCEEEEeCCCCEEEEEeCCC-----C-EEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEeccccc
Confidence            4588999999999999988899888888655     2 223344567899999999999888888888888888422233


Q ss_pred             CceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEee------ecCCCCceeEEEecCCCCEEE
Q psy11529         90 KWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHI------KKPIKSTITCLDWHPNNHLLG  163 (244)
Q Consensus        90 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~------~~~~~~~v~~~~~~p~~~~l~  163 (244)
                      ... ...........+.+++.++++++++-+.++.+..++.............      ..........+.++. +.+++
T Consensus       102 ~~~-~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~-~~l~~  179 (302)
T d2p4oa1         102 TVE-TLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFG-NFLYV  179 (302)
T ss_dssp             CEE-EEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEET-TEEEE
T ss_pred             cee-eccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccC-Cceee
Confidence            322 2222234456789999999998888777888877776655321000000      001112345566653 33555


Q ss_pred             EeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCC
Q psy11529        164 CGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQ  240 (244)
Q Consensus       164 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~  240 (244)
                      +.+..+.|..++......               ......+..    ......++++++|+++++...++.|..++..
T Consensus       180 ~~~~~~~i~~~~~~~~~~---------------~~~~~~~~~----~~~pdgia~d~dG~l~va~~~~~~V~~i~p~  237 (302)
T d2p4oa1         180 SNTEKMLLLRIPVDSTDK---------------PGEPEIFVE----QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD  237 (302)
T ss_dssp             EETTTTEEEEEEBCTTSC---------------BCCCEEEEE----SCCCSSEEEBTTCCEEEECBTTCCEEEECTT
T ss_pred             ecCCCCeEEecccccccc---------------ccccccccC----CCCCcceEECCCCCEEEEEcCCCcEEEECCC
Confidence            666778888888632110               001111111    3345679999999988888788888888764

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.43  E-value=4.8e-10  Score=81.60  Aligned_cols=197  Identities=10%  Similarity=0.039  Sum_probs=127.1

Q ss_pred             eEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeec-cCC----CceEEEEeCCCCCeEEEEeC-----------
Q psy11529         12 VTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLD-GHD----LKVTGIDWAPNTNRIVTCSA-----------   75 (244)
Q Consensus        12 v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~-~~~----~~v~~~~~~~~~~~l~~~~~-----------   75 (244)
                      -..++|.++++.++++...+.+..++.++  .   ....+. ...    ...+.+++.++|++.++-..           
T Consensus        73 P~Gl~~~~dg~~l~vad~~~~i~~~~~~g--~---~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~  147 (314)
T d1pjxa_          73 PAGCQCDRDANQLFVADMRLGLLVVQTDG--T---FEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRS  147 (314)
T ss_dssp             EEEEEECSSSSEEEEEETTTEEEEEETTS--C---EEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBT
T ss_pred             ceeEEEeCCCCEEEEEECCCeEEEEeCCC--c---EEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccce
Confidence            35699999998887777667788888766  2   221111 111    13578999999988776421           


Q ss_pred             ----CccEEEEeeeCCCCCceeeEEEeccCcceEEEEECCCCC----eEEE-eeCCCeEEEEEeecCCCceEEEeee---
Q psy11529         76 ----DRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLEN----KFAA-GSGARLISVCYFESENDWWVAKHIK---  143 (244)
Q Consensus        76 ----d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~----~l~~-~~~d~~i~i~d~~~~~~~~~~~~~~---  143 (244)
                          .|.|..++  . .++....   ...-...+.++|+|++.    .|++ -+..+.|..|++.............   
T Consensus       148 ~~~~~G~v~~~~--~-dg~~~~~---~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~  221 (314)
T d1pjxa_         148 MQEKFGSIYCFT--T-DGQMIQV---DTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIP  221 (314)
T ss_dssp             TSSSCEEEEEEC--T-TSCEEEE---EEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECC
T ss_pred             eccCCceEEEEe--e-cCceeEe---eCCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEcc
Confidence                23444444  2 3442221   22233457889988764    3444 4567889999987654321111111   


Q ss_pred             cCCCCceeEEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCC
Q psy11529        144 KPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGN  223 (244)
Q Consensus       144 ~~~~~~v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  223 (244)
                      .........+++.++|++.++....+.|.+||.                  ..++.+..+..+   ....++++|.||++
T Consensus       222 ~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp------------------~~g~~~~~i~~p---~~~~t~~afg~d~~  280 (314)
T d1pjxa_         222 GTHEGGADGMDFDEDNNLLVANWGSSHIEVFGP------------------DGGQPKMRIRCP---FEKPSNLHFKPQTK  280 (314)
T ss_dssp             CCSSCEEEEEEEBTTCCEEEEEETTTEEEEECT------------------TCBSCSEEEECS---SSCEEEEEECTTSS
T ss_pred             ccccccceeeEEecCCcEEEEEcCCCEEEEEeC------------------CCCEEEEEEECC---CCCEEEEEEeCCCC
Confidence            112234668999999998888888899999996                  445556666655   56789999999997


Q ss_pred             -EEEEeeCCCcEEEEeCC
Q psy11529        224 -KLCWTSHDGSINVRMSQ  240 (244)
Q Consensus       224 -~l~~~~~dg~i~vwd~~  240 (244)
                       ++++.+.+|.|...++.
T Consensus       281 ~lyVt~~~~g~i~~~~~~  298 (314)
T d1pjxa_         281 TIFVTEHENNAVWKFEWQ  298 (314)
T ss_dssp             EEEEEETTTTEEEEEECS
T ss_pred             EEEEEECCCCcEEEEECC
Confidence             55666677888887765

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.39  E-value=2.1e-10  Score=81.32  Aligned_cols=195  Identities=9%  Similarity=-0.011  Sum_probs=124.7

Q ss_pred             ceEEEEEcCCCCeEEEe-cCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCCCC
Q psy11529         11 PVTTHAWNNTRQQLAFT-PNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDK   89 (244)
Q Consensus        11 ~v~~~~~~~~~~~l~~~-~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~   89 (244)
                      .-.++++.++|+.+++. +..+.+..++...  . ........+ ......++++++++.+++....+.+++++  ..+.
T Consensus        15 ~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~--~-~~~~~~~~~-~~~p~gvav~~~g~i~v~d~~~~~i~~~~--~~~~   88 (260)
T d1rwia_          15 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGS--T-GTTVLPFNG-LYQPQGLAVDGAGTVYVTDFNNRVVTLAA--GSNN   88 (260)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEEC-------CEEECCCCS-CCSCCCEEECTTCCEEEEETTTEEEEECT--TCSC
T ss_pred             CCCEEEEcCCCCEEEEEcCCCCEEEEEcCCC--c-eEEEeccCC-ccCceEEEEcCCCCEEEeeeeeceeeeee--eccc
Confidence            34789999999976654 4557777777655  1 022222222 23456889999998877776666776666  3333


Q ss_pred             CceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEeeCCC
Q psy11529         90 KWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDF  169 (244)
Q Consensus        90 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg  169 (244)
                      .   .............+++.++++++++-.....+..++......    .............++++|+++++++...++
T Consensus        89 ~---~~~~~~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~----~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~  161 (260)
T d1rwia_          89 Q---TVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQ----TVLPFTGLNDPDGVAVDNSGNVYVTDTDNN  161 (260)
T ss_dssp             C---EECCCCSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSC----EECCCCSCCSCCEEEECTTCCEEEEEGGGT
T ss_pred             e---eeeeeeeeeecccccccccceeEeecccccccccccccccee----eeeeecccCCcceeeecCCCCEeeeccccc
Confidence            3   111122335678999999998877766666666665544432    111112234567899999999888888888


Q ss_pred             eEEEEEeeecccccCCCCCCCCccccccceeEEec-CCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCC
Q psy11529        170 KVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELN-NSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQ  240 (244)
Q Consensus       170 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~  240 (244)
                      .|..+|..                   +.....+. ..   ......+++.++|+++++....+.|..++..
T Consensus       162 ~i~~~d~~-------------------~~~~~~~~~~~---~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~  211 (260)
T d1rwia_         162 RVVKLEAE-------------------SNNQVVLPFTD---ITAPWGIAVDEAGTVYVTEHNTNQVVKLLAG  211 (260)
T ss_dssp             EEEEECTT-------------------TCCEEECCCSS---CCSEEEEEECTTCCEEEEETTTTEEEEECTT
T ss_pred             cccccccc-------------------cceeeeeeccc---cCCCccceeeeeeeeeeeecCCCEEEEEeCC
Confidence            89999862                   22222222 22   4567889999999888887778888887764

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.38  E-value=2.2e-10  Score=81.26  Aligned_cols=195  Identities=12%  Similarity=-0.037  Sum_probs=128.2

Q ss_pred             ceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCCCCC
Q psy11529         11 PVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKK   90 (244)
Q Consensus        11 ~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~   90 (244)
                      ....++++++|+.+++....+.+++++-..  .  ....... ......++++.++++++++-.....+..++  .....
T Consensus        58 ~p~gvav~~~g~i~v~d~~~~~i~~~~~~~--~--~~~~~~~-~~~~p~~iavd~~g~i~v~d~~~~~~~~~~--~~~~~  130 (260)
T d1rwia_          58 QPQGLAVDGAGTVYVTDFNNRVVTLAAGSN--N--QTVLPFD-GLNYPEGLAVDTQGAVYVADRGNNRVVKLA--AGSKT  130 (260)
T ss_dssp             SCCCEEECTTCCEEEEETTTEEEEECTTCS--C--CEECCCC-SCCSEEEEEECTTCCEEEEEGGGTEEEEEC--TTCSS
T ss_pred             CceEEEEcCCCCEEEeeeeeceeeeeeecc--c--eeeeeee-eeeecccccccccceeEeeccccccccccc--cccce
Confidence            346788999998887776666666665443  2  2222222 234568999999998877766666777777  43332


Q ss_pred             ceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEeeCCCe
Q psy11529         91 WKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFK  170 (244)
Q Consensus        91 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~  170 (244)
                       . .............++++|+++.+++...++.|..++.+....    .......-.....++++++|+++++....+.
T Consensus       131 -~-~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~----~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~  204 (260)
T d1rwia_         131 -Q-TVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQ----VVLPFTDITAPWGIAVDEAGTVYVTEHNTNQ  204 (260)
T ss_dssp             -C-EECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCE----EECCCSSCCSEEEEEECTTCCEEEEETTTTE
T ss_pred             -e-eeeeecccCCcceeeecCCCCEeeecccccccccccccccee----eeeeccccCCCccceeeeeeeeeeeecCCCE
Confidence             1 111122234567899999999888877788888887665542    2222233356789999999998888877888


Q ss_pred             EEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeC
Q psy11529        171 VRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMS  239 (244)
Q Consensus       171 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~  239 (244)
                      |..++.                   .+.....+....  -.....++++++|.++++-..++.|+..+.
T Consensus       205 i~~~~~-------------------~~~~~~~~~~~~--~~~P~~i~~d~~g~l~vad~~~~rI~~i~~  252 (260)
T d1rwia_         205 VVKLLA-------------------GSTTSTVLPFTG--LNTPLAVAVDSDRTVYVADRGNDRVVKLTS  252 (260)
T ss_dssp             EEEECT-------------------TCSCCEECCCCS--CCCEEEEEECTTCCEEEEEGGGTEEEEECC
T ss_pred             EEEEeC-------------------CCCeEEEEccCC--CCCeEEEEEeCCCCEEEEECCCCEEEEEeC
Confidence            888874                   222222222210  345789999999998877667777776553

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.37  E-value=1.7e-10  Score=86.72  Aligned_cols=206  Identities=10%  Similarity=-0.008  Sum_probs=124.3

Q ss_pred             ceEEEEEcCCCCeEEEe-cCCCeEEEeeeccCCCcceeeeeec-cCCCceEEEEeCCCCCe--EEEEeCCc---------
Q psy11529         11 PVTTHAWNNTRQQLAFT-PNNQEVHLYQYEKAANDWSQLDVLD-GHDLKVTGIDWAPNTNR--IVTCSADR---------   77 (244)
Q Consensus        11 ~v~~~~~~~~~~~l~~~-~~d~~v~v~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~--l~~~~~d~---------   77 (244)
                      .......+|||++|++. ..++.|.++|+.+  .  +....+. .+...+..++|+|+|+.  ++..+.+.         
T Consensus        73 ~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t--~--k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~  148 (441)
T d1qnia2          73 HISMTDGRYDGKYLFINDKANTRVARIRLDI--M--KTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTD  148 (441)
T ss_dssp             EEEEETTEEEEEEEEEEETTTTEEEEEETTT--T--EEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSC
T ss_pred             CcceecccCCCCEEEEEcCCCCEEEEEECCC--C--cEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccc
Confidence            34455668999988665 4688999999987  4  4444333 25678899999999884  43333221         


Q ss_pred             --------cEEEEeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCC---------------eEEEEE-----
Q psy11529         78 --------NAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGAR---------------LISVCY-----  129 (244)
Q Consensus        78 --------~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~---------------~i~i~d-----  129 (244)
                              .+..+|  ..+.+......   .......+.|+|+|+++++.+.+.               .+.+.+     
T Consensus       149 ~~~~~~~~~~~~iD--~~t~~v~~qI~---v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~  223 (441)
T d1qnia2         149 FSLDNSYTMFTAID--AETMDVAWQVI---VDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIA  223 (441)
T ss_dssp             CCGGGEEEEEEEEE--TTTCSEEEEEE---ESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHH
T ss_pred             cccccccceEEeec--CccceeeEEEe---cCCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceE
Confidence                    123456  55544332222   235678899999999988776432               122222     


Q ss_pred             ---------------------eecCCCceEEEeeecCCCCceeEEEecCCCCEEE-EeeCCCeEEEEEeeecccccCCCC
Q psy11529        130 ---------------------FESENDWWVAKHIKKPIKSTITCLDWHPNNHLLG-CGSTDFKVRVFSAYIKDIESAPQS  187 (244)
Q Consensus       130 ---------------------~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~  187 (244)
                                           ....+.   ....  +.......+.++|||++++ ++..+++|.+||+...+...... 
T Consensus       224 ~~~~dGk~~~v~~~~v~vvd~~~~~~v---~~~I--PvgksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~-  297 (441)
T d1qnia2         224 AAVKAGNFKTIGDSKVPVVDGRGESEF---TRYI--PVPKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDK-  297 (441)
T ss_dssp             HHHHTTCCBCCTTCCCCEEECSSSCSS---EEEE--CCBSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTS-
T ss_pred             EEecCCCEEEeCCCCcEEEEcccCCce---EEEE--eCCCCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhcc-
Confidence                                 111111   1111  1123467899999999765 56678999999985422110000 


Q ss_pred             CCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCC
Q psy11529        188 TNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQ  240 (244)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~  240 (244)
                            ......+......   .-.....+|+++|..+.+...|..|..|++.
T Consensus       298 ------~~~~~~~~~~~~~---glgplh~~fd~~g~~yts~~~ds~v~kw~~~  341 (441)
T d1qnia2         298 ------IELRDTIVAEPEL---GLGPLHTTFDGRGNAYTTLFIDSQVCKWNIA  341 (441)
T ss_dssp             ------SCGGGGEEECCBC---CSCEEEEEECSSSEEEEEETTTTEEEEEEHH
T ss_pred             ------CCcceEEEeeccc---ccCcccceecCCceEEEcccccceEEEeccc
Confidence                  0111111111111   3345567899999888888899999999974

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.36  E-value=7.6e-10  Score=82.31  Aligned_cols=166  Identities=9%  Similarity=0.040  Sum_probs=99.5

Q ss_pred             CCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeE--EEEe-CCccEEEEeee
Q psy11529          9 INPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRI--VTCS-ADRNAYVWTQN   85 (244)
Q Consensus         9 ~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l--~~~~-~d~~i~iwd~~   85 (244)
                      ..++.-++|+|+++.|.++. .+.+..|.+..+.+ ...... .........+.++++++.+  +++. ..+.+..+.+.
T Consensus        39 ~~~~s~la~s~d~~~ly~~~-~~~~~~~~i~~~~~-~~~~~~-~~~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~  115 (365)
T d1jofa_          39 DEPISWMTFDHERKNIYGAA-MKKWSSFAVKSPTE-IVHEAS-HPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFY  115 (365)
T ss_dssp             TCCCSEEEECTTSSEEEEEE-BTEEEEEEEEETTE-EEEEEE-EECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEES
T ss_pred             CCCCCEEEEcCCCCEEEEEe-CCcEEEEEEeCCCC-eEEEee-ecCCCCcEEEEECCCCCEEEEEEecCCCCEEEEeEcc
Confidence            44566799999999988775 46788888865222 111111 1123344577888888743  3332 23555554421


Q ss_pred             C-----------CCCCceeeE-E-EeccCcceEEEEECCCCCeEEEeeC-CCeEEEEEeecCCCceEEEee-ecCCCCce
Q psy11529         86 N-----------DDKKWKPTL-V-LLRINRAATCVKWSPLENKFAAGSG-ARLISVCYFESENDWWVAKHI-KKPIKSTI  150 (244)
Q Consensus        86 ~-----------~~~~~~~~~-~-~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~i~d~~~~~~~~~~~~~-~~~~~~~v  150 (244)
                      .           ..+...... . .......+.++.|+|+|+++++++. ...|.+|++............ ........
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gP  195 (365)
T d1jofa_         116 KFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHP  195 (365)
T ss_dssp             SSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCE
T ss_pred             CCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCce
Confidence            0           111110000 0 0112335789999999998888764 557888887765442222222 22234678


Q ss_pred             eEEEecCCCCEEEEee-CCCeEEEEEee
Q psy11529        151 TCLDWHPNNHLLGCGS-TDFKVRVFSAY  177 (244)
Q Consensus       151 ~~~~~~p~~~~l~~~~-~dg~i~i~d~~  177 (244)
                      ..++|+|+++++++.. .+++|.+|++.
T Consensus       196 r~i~f~pdg~~~yv~~e~~~~V~v~~~~  223 (365)
T d1jofa_         196 RWVAMHPTGNYLYALMEAGNRICEYVID  223 (365)
T ss_dssp             EEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             EEEEECCCCceEEEeccCCCEEEEEEec
Confidence            9999999999876655 57899999984

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.27  E-value=7.1e-09  Score=75.51  Aligned_cols=211  Identities=9%  Similarity=0.042  Sum_probs=123.5

Q ss_pred             CceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCC--ccEEEEeeeCC
Q psy11529         10 NPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSAD--RNAYVWTQNND   87 (244)
Q Consensus        10 ~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--~~i~iwd~~~~   87 (244)
                      ..+..++|.++|+++++-...+.|..|+.++  +  .....+.........++++++|+.+++...+  ....++.++..
T Consensus        40 ~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g--~--~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~  115 (319)
T d2dg1a1          40 LQLEGLNFDRQGQLFLLDVFEGNIFKINPET--K--EIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATEN  115 (319)
T ss_dssp             CCEEEEEECTTSCEEEEETTTCEEEEECTTT--C--CEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTT
T ss_pred             cCcEeCEECCCCCEEEEECCCCEEEEEECCC--C--eEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCC
Confidence            3457899999999877777788888888766  3  2333344455677899999999877765332  23333332144


Q ss_pred             CCCceeeEEEeccCcceEEEEECCCCCeEEEeeCC----CeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEE
Q psy11529         88 DKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGA----RLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLG  163 (244)
Q Consensus        88 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~  163 (244)
                      .................+.+++.++|++.++....    ..-.+|.+......  ...... .-...+.++|+|+++.|+
T Consensus       116 ~~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~--~~~~~~-~~~~pnGia~s~dg~~ly  192 (319)
T d2dg1a1         116 GDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRT--VTPIIQ-NISVANGIALSTDEKVLW  192 (319)
T ss_dssp             SCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCC--EEEEEE-EESSEEEEEECTTSSEEE
T ss_pred             CceeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccce--eEEEee-ccceeeeeeeccccceEE
Confidence            44432222111223457789999999866653221    12234444433220  111111 123457899999998654


Q ss_pred             -EeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCC
Q psy11529        164 -CGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQ  240 (244)
Q Consensus       164 -~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~  240 (244)
                       +-+..++|..|++........          ............   ......+++.++|++.++....+.|.++|.+
T Consensus       193 vad~~~~~I~~~d~~~~g~~~~----------~~~~~~~~~~~~---~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p~  257 (319)
T d2dg1a1         193 VTETTANRLHRIALEDDGVTIQ----------PFGATIPYYFTG---HEGPDSCCIDSDDNLYVAMYGQGRVLVFNKR  257 (319)
T ss_dssp             EEEGGGTEEEEEEECTTSSSEE----------EEEEEEEEECCS---SSEEEEEEEBTTCCEEEEEETTTEEEEECTT
T ss_pred             EecccCCceEEEEEcCCCceec----------cccceeeeccCC---ccceeeeeEcCCCCEEEEEcCCCEEEEECCC
Confidence             445678999999742110000          000111111111   2345689999999988888888999999864

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.27  E-value=2.7e-09  Score=77.16  Aligned_cols=195  Identities=13%  Similarity=0.027  Sum_probs=125.1

Q ss_pred             CCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCC
Q psy11529          8 GINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNND   87 (244)
Q Consensus         8 ~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~   87 (244)
                      ....+.+++|++||+++++...++.+..++.....+....+.... .....+.+++.++++++++-+.++.+..++  ..
T Consensus        66 ~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~--~~  142 (302)
T d2p4oa1          66 VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLP-DAIFLNGITPLSDTQYLTADSYRGAIWLID--VV  142 (302)
T ss_dssp             CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECT-TCSCEEEEEESSSSEEEEEETTTTEEEEEE--TT
T ss_pred             CCCCcceEEEcCCCCeEEEecCCceEEEEEecccccceeeccccC-CccccceeEEccCCCEEeeccccccceeee--cc
Confidence            367889999999999998887888888888755222222222222 355688999999999888887788888877  55


Q ss_pred             CCCceeeEEEe--------ccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCC
Q psy11529         88 DKKWKPTLVLL--------RINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNN  159 (244)
Q Consensus        88 ~~~~~~~~~~~--------~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~  159 (244)
                      .+.........        ........+.+.. +..+++.+..+.|..++.............  ........++++++|
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~-~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~pdgia~d~dG  219 (302)
T d2p4oa1         143 QPSGSIWLEHPMLARSNSESVFPAANGLKRFG-NFLYVSNTEKMLLLRIPVDSTDKPGEPEIF--VEQTNIDDFAFDVEG  219 (302)
T ss_dssp             TTEEEEEEECGGGSCSSTTCCSCSEEEEEEET-TEEEEEETTTTEEEEEEBCTTSCBCCCEEE--EESCCCSSEEEBTTC
T ss_pred             CCcceeEecCCccceeeccCcccccccccccC-CceeeecCCCCeEEeccccccccccccccc--cCCCCCcceEECCCC
Confidence            55422111110        0112345666653 234555566788888887765431111111  112346679999999


Q ss_pred             CEEEEeeCCCeEEEEEeeecccccCCCCCCCCcccccccee--EEecCCCCCCCCeEEEEE---ecCCCEEEEeeC
Q psy11529        160 HLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCL--VELNNSSSGGGWIHSVAF---SKDGNKLCWTSH  230 (244)
Q Consensus       160 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~v~~~~~---s~~~~~l~~~~~  230 (244)
                      +++++...+++|..++.                   .++..  ......   -...++++|   ++|++.|+.++.
T Consensus       220 ~l~va~~~~~~V~~i~p-------------------~G~~~~~~~~~~~---~~~pt~vafg~~~~D~~~Lyvtt~  273 (302)
T d2p4oa1         220 NLYGATHIYNSVVRIAP-------------------DRSTTIIAQAEQG---VIGSTAVAFGQTEGDCTAIYVVTN  273 (302)
T ss_dssp             CEEEECBTTCCEEEECT-------------------TCCEEEEECGGGT---CTTEEEEEECCSTTTTTEEEEEEC
T ss_pred             CEEEEEcCCCcEEEECC-------------------CCCEEEEEecCCC---CCCceEEEEcCCCCCCCEEEEECC
Confidence            98888888899988874                   34432  223322   456889999   678887766544

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.24  E-value=2.7e-10  Score=84.80  Aligned_cols=153  Identities=9%  Similarity=-0.118  Sum_probs=96.8

Q ss_pred             CCceEEEEEcCCCCeE--E-EecCCCe--EEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEe---------
Q psy11529          9 INPVTTHAWNNTRQQL--A-FTPNNQE--VHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCS---------   74 (244)
Q Consensus         9 ~~~v~~~~~~~~~~~l--~-~~~~d~~--v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---------   74 (244)
                      .++...++..++++..  + .+..++.  |.++|..+  +  +.+..+..+...  .++|+|||+.|++.+         
T Consensus        19 ~g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~--~--~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g   92 (368)
T d1mdah_          19 DGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGC--G--VTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKG   92 (368)
T ss_dssp             CCCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTT--T--EEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSS
T ss_pred             CCCccccccCCCCcceeEEeeccCCCcceEEEEeCCC--C--cEEEEEeCCCCC--cceECCCCCEEEEEcccCcccccc
Confidence            4555666778888853  2 2344454  55556655  4  666677665544  589999999888754         


Q ss_pred             -CCccEEEEeeeCCCCCceeeEEEecc-----CcceEEEEECCCCCeEEEee-CCCeEEEEEeecCCCceEEEeeecCCC
Q psy11529         75 -ADRNAYVWTQNNDDKKWKPTLVLLRI-----NRAATCVKWSPLENKFAAGS-GARLISVCYFESENDWWVAKHIKKPIK  147 (244)
Q Consensus        75 -~d~~i~iwd~~~~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~  147 (244)
                       .|+.|.+||  ..+++..........     ......++|+|||++|+++. .++.+.+||+.+.+.   ......+. 
T Consensus        93 ~~d~~v~v~D--~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~---~~~~~~~~-  166 (368)
T d1mdah_          93 KRTDYVEVFD--PVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSAS-  166 (368)
T ss_dssp             SEEEEEEEEC--TTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSS-
T ss_pred             ccCCeEEEEE--CCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcE---eEEeeccC-
Confidence             477899999  788776555443221     12234689999999998876 579999999988764   22222221 


Q ss_pred             CceeEEEecC-CCCEEEEeeCCCeEEEEEee
Q psy11529        148 STITCLDWHP-NNHLLGCGSTDFKVRVFSAY  177 (244)
Q Consensus       148 ~~v~~~~~~p-~~~~l~~~~~dg~i~i~d~~  177 (244)
                      ..    .+.| ....++..+.||.+.++++.
T Consensus       167 ~~----~~~~~~~~~~v~~~~Dg~~~~~~~~  193 (368)
T d1mdah_         167 CF----HIHPGAAATHYLGSCPASLAASDLA  193 (368)
T ss_dssp             CC----CCEEEETTEEECCCCTTSCEEEECC
T ss_pred             cc----eEccCCCceEEEEcCCCCEEEEEec
Confidence            11    1122 22355556667777777663

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.20  E-value=1.3e-07  Score=68.69  Aligned_cols=198  Identities=9%  Similarity=-0.043  Sum_probs=118.2

Q ss_pred             CCceEEEEEcCCCCeEEEecC--CCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeC------CccEE
Q psy11529          9 INPVTTHAWNNTRQQLAFTPN--NQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSA------DRNAY   80 (244)
Q Consensus         9 ~~~v~~~~~~~~~~~l~~~~~--d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------d~~i~   80 (244)
                      ......+++++||+++++...  .....++.+............-..-....+.+++.++|++.++...      .+.+.
T Consensus        81 ~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~  160 (319)
T d2dg1a1          81 KANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVY  160 (319)
T ss_dssp             SSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEE
T ss_pred             CCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCceeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeE
Confidence            345678999999988776532  2233344433211211111111112345788999999987665432      12344


Q ss_pred             EEeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEe-eCCCeEEEEEeecCCCceEEE----eeecCCCCceeEEEe
Q psy11529         81 VWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAG-SGARLISVCYFESENDWWVAK----HIKKPIKSTITCLDW  155 (244)
Q Consensus        81 iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~----~~~~~~~~~v~~~~~  155 (244)
                      .++  ...+.....   ...-...+.++|+|+++.|+++ +..+.|..|+++.........    ............+++
T Consensus       161 ~~~--~dg~~~~~~---~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~v  235 (319)
T d2dg1a1         161 YVS--PDFRTVTPI---IQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCI  235 (319)
T ss_dssp             EEC--TTSCCEEEE---EEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEE
T ss_pred             EEe--cccceeEEE---eeccceeeeeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeE
Confidence            444  333332211   2223456789999999876555 457899999987654311111    111222234678999


Q ss_pred             cCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCC---CCCCCeEEEEEecCCCEEEEeeC
Q psy11529        156 HPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSS---SGGGWIHSVAFSKDGNKLCWTSH  230 (244)
Q Consensus       156 ~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~s~~~~~l~~~~~  230 (244)
                      .++|++.++....+.|.+||.                   .++.+..+....   .....+++++|.+++..+++...
T Consensus       236 D~~G~l~Va~~~~g~V~~~~p-------------------~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~~  294 (319)
T d2dg1a1         236 DSDDNLYVAMYGQGRVLVFNK-------------------RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSN  294 (319)
T ss_dssp             BTTCCEEEEEETTTEEEEECT-------------------TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEE
T ss_pred             cCCCCEEEEEcCCCEEEEECC-------------------CCcEEEEEeCCCcCCCcCceeeeEEEeCCCCEEEEEcC
Confidence            999998888888999999994                   577777665320   00335789999998776655443

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.20  E-value=5.2e-08  Score=68.83  Aligned_cols=168  Identities=14%  Similarity=0.202  Sum_probs=101.3

Q ss_pred             eEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCC-c--cEEEEeeeCCCCCceeeEEEeccCcceEEEE
Q psy11529         32 EVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSAD-R--NAYVWTQNNDDKKWKPTLVLLRINRAATCVK  108 (244)
Q Consensus        32 ~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-~--~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~  108 (244)
                      .|.|.|.++  .   ....+..+...+...+|||||+.||..... +  .+.+.+  ...+.   ......+........
T Consensus        20 ~l~i~d~dG--~---~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~--~~~~~---~~~~~~~~~~~~~~~   89 (269)
T d2hqsa1          20 ELRVSDYDG--Y---NQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQT--LANGA---VRQVASFPRHNGAPA   89 (269)
T ss_dssp             EEEEEETTS--C---SCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEE--TTTCC---EEEEECCSSCEEEEE
T ss_pred             EEEEEcCCC--C---CcEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeee--cccCc---eeEEeeeecccccce
Confidence            588888776  3   334444457778899999999999876543 2  355555  55554   233345677788999


Q ss_pred             ECCCCCeEEEeeC-CCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEE-eeCCCeEEEEEeeecccccCCC
Q psy11529        109 WSPLENKFAAGSG-ARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGC-GSTDFKVRVFSAYIKDIESAPQ  186 (244)
Q Consensus       109 ~~~~~~~l~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~  186 (244)
                      |+|+|+.++.... ++...++.......   ................+++++..++. ...+|...+|...         
T Consensus        90 ~spdg~~i~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~---------  157 (269)
T d2hqsa1          90 FSPDGSKLAFALSKTGSLNLYVMDLASG---QIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVN---------  157 (269)
T ss_dssp             ECTTSSEEEEEECTTSSCEEEEEETTTC---CEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEE---------
T ss_pred             ecCCCCeeeEeeecCCccceeecccccc---cceeeeeccccccccccccccccceecccccCCceEeeee---------
Confidence            9999998887554 33444444443332   12222233344556677777765444 4445554444442         


Q ss_pred             CCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCC
Q psy11529        187 STNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDG  232 (244)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg  232 (244)
                              ........+...   ........|+|+++.++..+.++
T Consensus       158 --------~~~~~~~~~~~~---~~~~~~~~~spdg~~~~~~~~~~  192 (269)
T d2hqsa1         158 --------INGGAPQRITWE---GSQNQDADVSSDGKFMVMVSSNG  192 (269)
T ss_dssp             --------TTSSCCEECCCS---SSEEEEEEECTTSSEEEEEEECS
T ss_pred             --------cccccceeeecc---cccccccccccccceeEEEeecC
Confidence                    112222333333   56677889999999888766543

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=1.1e-09  Score=83.90  Aligned_cols=153  Identities=12%  Similarity=0.110  Sum_probs=97.2

Q ss_pred             EEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeecc-CCCceEEEEeCCCCCeEEEEe---------CCccEEEEee
Q psy11529         15 HAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDG-HDLKVTGIDWAPNTNRIVTCS---------ADRNAYVWTQ   84 (244)
Q Consensus        15 ~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~---------~d~~i~iwd~   84 (244)
                      ..|.+++.++.. ..+|.|.+|++.+  +..+.+..... ....+....||||+++++...         ..+.+.++| 
T Consensus        22 ~~W~~~~~~~~~-~~~g~i~~~~~~~--~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d-   97 (465)
T d1xfda1          22 AKWISDTEFIYR-EQKGTVRLWNVET--NTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSK-   97 (465)
T ss_dssp             CCBSSSSCBCCC-CSSSCEEEBCGGG--CCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEE-
T ss_pred             CEEeCCCcEEEE-eCCCcEEEEECCC--CCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEE-
Confidence            468888876644 4578999999977  32122222211 234677888999999987764         246788999 


Q ss_pred             eCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCC-----------------
Q psy11529         85 NNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIK-----------------  147 (244)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~-----------------  147 (244)
                       +.+++.............+....|||||+.+|... ++.+.+.+...+..   ......+..                 
T Consensus        98 -~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~---~~lt~~g~~~~i~nG~~d~vyeee~~  172 (465)
T d1xfda1          98 -IPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQA---IRVVSTGKEGVIYNGLSDWLYEEEIL  172 (465)
T ss_dssp             -SSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCC---EEEECCCBTTTEEEEECCHHHHHTTS
T ss_pred             -ccCCceeeccCccCCccccceeeeccCCceEEEEe-cceEEEEecCCCce---EEEecccCcceeeccccchhhhhhhc
Confidence             77776443322222344566789999999999876 45677766655543   111111111                 


Q ss_pred             CceeEEEecCCCCEEEEeeC-CCeEEEEEe
Q psy11529        148 STITCLDWHPNNHLLGCGST-DFKVRVFSA  176 (244)
Q Consensus       148 ~~v~~~~~~p~~~~l~~~~~-dg~i~i~d~  176 (244)
                      +.-.++-|||||++||.... +..+..+.+
T Consensus       173 ~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~  202 (465)
T d1xfda1         173 KTHIAHWWSPDGTRLAYAAINDSRVPIMEL  202 (465)
T ss_dssp             SSSEEEEECTTSSEEEEEEEECTTSCEEEE
T ss_pred             cccceEEECCCCCeEEEEEecccccceeec
Confidence            11246789999999988763 455666655

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=3e-09  Score=81.52  Aligned_cols=105  Identities=15%  Similarity=0.156  Sum_probs=71.1

Q ss_pred             CceEEEEEcCCCCeEEEec---------CCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEE
Q psy11529         10 NPVTTHAWNNTRQQLAFTP---------NNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAY   80 (244)
Q Consensus        10 ~~v~~~~~~~~~~~l~~~~---------~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~   80 (244)
                      -.+....||||+++++.+.         ..+.+.++|+.+  +....+.........+....|||||+.+|... ++.+.
T Consensus        61 ~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~--~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~  137 (465)
T d1xfda1          61 LRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPH--GDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIY  137 (465)
T ss_dssp             TTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSS--CCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEE
T ss_pred             cccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccC--CceeeccCccCCccccceeeeccCCceEEEEe-cceEE
Confidence            4567788999999887763         357889999987  43344443444455667789999999998875 66788


Q ss_pred             EEeeeCCCCCceeeEEEeccCc-----------------ceEEEEECCCCCeEEEee
Q psy11529         81 VWTQNNDDKKWKPTLVLLRINR-----------------AATCVKWSPLENKFAAGS  120 (244)
Q Consensus        81 iwd~~~~~~~~~~~~~~~~~~~-----------------~v~~~~~~~~~~~l~~~~  120 (244)
                      +.+  ..++...... ..+...                 .-..+-|||||++||...
T Consensus       138 ~~~--~~~~~~~~lt-~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~  191 (465)
T d1xfda1         138 YCA--HVGKQAIRVV-STGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAA  191 (465)
T ss_dssp             EES--SSSSCCEEEE-CCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEE
T ss_pred             EEe--cCCCceEEEe-cccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEE
Confidence            888  5555432222 111111                 124678999999999864

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.14  E-value=1.2e-07  Score=68.76  Aligned_cols=210  Identities=10%  Similarity=0.047  Sum_probs=122.3

Q ss_pred             CCceEEEEEcCCCCeEEEecC-------CCeEEEeeeccCCCcceeeeee--ccCCCceEEEEeCCCCCeEEEEeCCccE
Q psy11529          9 INPVTTHAWNNTRQQLAFTPN-------NQEVHLYQYEKAANDWSQLDVL--DGHDLKVTGIDWAPNTNRIVTCSADRNA   79 (244)
Q Consensus         9 ~~~v~~~~~~~~~~~l~~~~~-------d~~v~v~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d~~i   79 (244)
                      -.....++|.|+|+++++...       +++|..|+..+  +........  ......-..++|.++++.++++...+.+
T Consensus        17 ~~g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~--~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i   94 (314)
T d1pjxa_          17 IPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKT--GKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGL   94 (314)
T ss_dssp             CTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTT--CCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEE
T ss_pred             CCCCeEeEEeCCCCEEEEECccccccccCCEEEEEECCC--CcEEEEECCccccCCCcceeEEEeCCCCEEEEEECCCeE
Confidence            345678899999998776433       35688888766  321221111  1112335789999999988887776778


Q ss_pred             EEEeeeCCCCCceeeEEEecc---CcceEEEEECCCCCeEEEeeC-------------CCeEEEEEeecCCCceEEEeee
Q psy11529         80 YVWTQNNDDKKWKPTLVLLRI---NRAATCVKWSPLENKFAAGSG-------------ARLISVCYFESENDWWVAKHIK  143 (244)
Q Consensus        80 ~iwd~~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~~-------------d~~i~i~d~~~~~~~~~~~~~~  143 (244)
                      ...+  ...+... .......   -...+.+++.++|++.++-..             ...-++|.+......   ....
T Consensus        95 ~~~~--~~g~~~~-~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg~~---~~~~  168 (314)
T d1pjxa_          95 LVVQ--TDGTFEE-IAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQM---IQVD  168 (314)
T ss_dssp             EEEE--TTSCEEE-CCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSCE---EEEE
T ss_pred             EEEe--CCCcEEE-EEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeecCce---eEee
Confidence            8888  5443211 1111111   123578999999987766321             112244545443321   1111


Q ss_pred             cCCCCceeEEEecCCCC-----EEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEE
Q psy11529        144 KPIKSTITCLDWHPNNH-----LLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAF  218 (244)
Q Consensus       144 ~~~~~~v~~~~~~p~~~-----~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  218 (244)
                      . .-...+.++|+|++.     ++++-+..+.|..||+......            ...+....+....  ......+++
T Consensus       169 ~-~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~------------~~~~~~~~~~~~~--~~~pdGiav  233 (314)
T d1pjxa_         169 T-AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKI------------ENKKVWGHIPGTH--EGGADGMDF  233 (314)
T ss_dssp             E-EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEE------------EEEEEEEECCCCS--SCEEEEEEE
T ss_pred             C-CcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCcccc------------ceeeEEEEccccc--cccceeeEE
Confidence            1 113446899998764     4455567788999987422110            1112222333221  234568999


Q ss_pred             ecCCCEEEEeeCCCcEEEEeCCC
Q psy11529        219 SKDGNKLCWTSHDGSINVRMSQQ  241 (244)
Q Consensus       219 s~~~~~l~~~~~dg~i~vwd~~~  241 (244)
                      ..+|++.++....+.|.+||.+.
T Consensus       234 D~~GnlyVa~~~~g~I~~~dp~~  256 (314)
T d1pjxa_         234 DEDNNLLVANWGSSHIEVFGPDG  256 (314)
T ss_dssp             BTTCCEEEEEETTTEEEEECTTC
T ss_pred             ecCCcEEEEEcCCCEEEEEeCCC
Confidence            99999888877788999998763

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.13  E-value=1.4e-08  Score=72.22  Aligned_cols=97  Identities=8%  Similarity=0.108  Sum_probs=65.9

Q ss_pred             EEcCC--CCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeC-C-----ccEEEEeeeCC
Q psy11529         16 AWNNT--RQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSA-D-----RNAYVWTQNND   87 (244)
Q Consensus        16 ~~~~~--~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d-----~~i~iwd~~~~   87 (244)
                      ..+||  |+.+|..+ ++.|.+.++.+  +   ....+..+.+.+...+|||||+.||.... +     ..|.+++  ..
T Consensus         5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~--g---~~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~--~~   76 (281)
T d1k32a2           5 LLNPDIHGDRIIFVC-CDDLWEHDLKS--G---STRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYN--GE   76 (281)
T ss_dssp             CEEEEEETTEEEEEE-TTEEEEEETTT--C---CEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEE--TT
T ss_pred             ccCCCCCCCEEEEEe-CCcEEEEECCC--C---CEEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEE--ec
Confidence            46788  99998875 46799999987  3   34456667788899999999999986542 2     2355555  66


Q ss_pred             CCCceeeEEE----eccCcceEEEEECCCCCeEEEee
Q psy11529         88 DKKWKPTLVL----LRINRAATCVKWSPLENKFAAGS  120 (244)
Q Consensus        88 ~~~~~~~~~~----~~~~~~v~~~~~~~~~~~l~~~~  120 (244)
                      +++.......    ...........|+|+|+.|+...
T Consensus        77 ~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~  113 (281)
T d1k32a2          77 NGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTD  113 (281)
T ss_dssp             TTEEEECCCCCEEEETTEECSEEEEECTTCCEEEEEC
T ss_pred             CCceEEeeecCCCccCccccccccccCCCCCEEEEEE
Confidence            6653322111    11223456789999999988753

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.12  E-value=2.9e-07  Score=66.04  Aligned_cols=187  Identities=11%  Similarity=0.019  Sum_probs=124.9

Q ss_pred             CCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccC--CCceEEEEeCCCCCeEEEEeC----CccEEEE
Q psy11529          9 INPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGH--DLKVTGIDWAPNTNRIVTCSA----DRNAYVW   82 (244)
Q Consensus         9 ~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~----d~~i~iw   82 (244)
                      ...+.++++.++|++++++ . ..+.++|..+  ++.+.+......  ...++.+.+.|+|++.++...    .+.-.+|
T Consensus        58 ~~~~~~i~~~~dg~l~va~-~-~gl~~~d~~t--g~~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~  133 (295)
T d2ghsa1          58 PFMGSALAKISDSKQLIAS-D-DGLFLRDTAT--GVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIY  133 (295)
T ss_dssp             SSCEEEEEEEETTEEEEEE-T-TEEEEEETTT--CCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEE
T ss_pred             CCCcEEEEEecCCCEEEEE-e-CccEEeeccc--ceeeEEeeeecCCCcccceeeEECCCCCEEEEeccccccccceeEe
Confidence            5678889999998777654 4 4588899877  433433333222  235789999999987765432    2344566


Q ss_pred             eeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEe-eCCCeEEEEEeecCCCc----eEEEeeecCCCCceeEEEecC
Q psy11529         83 TQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAG-SGARLISVCYFESENDW----WVAKHIKKPIKSTITCLDWHP  157 (244)
Q Consensus        83 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~i~d~~~~~~~----~~~~~~~~~~~~~v~~~~~~p  157 (244)
                      .  ...++....   ...-...+.++|+++++.++.+ +..+.|..|+++.....    ...........+....+++..
T Consensus       134 ~--~~~g~~~~~---~~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~  208 (295)
T d2ghsa1         134 H--VAKGKVTKL---FADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDA  208 (295)
T ss_dssp             E--EETTEEEEE---EEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECT
T ss_pred             e--ecCCcEEEE---eeccCCcceeeecCCCceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcC
Confidence            6  445543222   2233456789999999876554 45788988888654321    011112223446688899999


Q ss_pred             CCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEe-cCCCEEE
Q psy11529        158 NNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFS-KDGNKLC  226 (244)
Q Consensus       158 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~  226 (244)
                      +|++.++.-..+.|..||                   ..++.+..+...   ...+++++|- ||.+.|+
T Consensus       209 ~GnlWva~~~~g~V~~~d-------------------p~G~~~~~i~lP---~~~~T~~~FGG~d~~~Ly  256 (295)
T d2ghsa1         209 EGHIWNARWGEGAVDRYD-------------------TDGNHIARYEVP---GKQTTCPAFIGPDASRLL  256 (295)
T ss_dssp             TSCEEEEEETTTEEEEEC-------------------TTCCEEEEEECS---CSBEEEEEEESTTSCEEE
T ss_pred             CCCEEeeeeCCCceEEec-------------------CCCcEeeEecCC---CCceEEEEEeCCCCCEEE
Confidence            999888877788999999                   468888888776   6679999996 5766444

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.04  E-value=1.2e-07  Score=67.61  Aligned_cols=155  Identities=8%  Similarity=0.033  Sum_probs=106.0

Q ss_pred             CceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeee--ccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCC
Q psy11529         10 NPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVL--DGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNND   87 (244)
Q Consensus        10 ~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~   87 (244)
                      .....+++.++|+++++....+.+.+++.+.     +.+..+  ..+......+++.++++.+++....+.|++||  . 
T Consensus       114 ~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g-----~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d--~-  185 (279)
T d1q7fa_         114 QHPRGVTVDNKGRIIVVECKVMRVIIFDQNG-----NVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFN--Y-  185 (279)
T ss_dssp             SCEEEEEECTTSCEEEEETTTTEEEEECTTS-----CEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEE--T-
T ss_pred             cccceeccccCCcEEEEeeccceeeEeccCC-----ceeecccccccccccceeeeccceeEEeeeccccceeeee--c-
Confidence            4456788888898888777778888888765     444443  33556778899999998888888889999999  3 


Q ss_pred             CCCceeeEEEeccCcceEEEEECCCCCeEEEeeC-CCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEee
Q psy11529         88 DKKWKPTLVLLRINRAATCVKWSPLENKFAAGSG-ARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGS  166 (244)
Q Consensus        88 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~  166 (244)
                      +++....+...+.......+++.++|+.+++-.. ++.|.+|+.+ ++.  ...............+++.|+|++++ ++
T Consensus       186 ~G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~-G~~--~~~~~~~~~~~~p~~vav~~dG~l~V-~~  261 (279)
T d1q7fa_         186 EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD-GQL--ISALESKVKHAQCFDVALMDDGSVVL-AS  261 (279)
T ss_dssp             TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT-SCE--EEEEEESSCCSCEEEEEEETTTEEEE-EE
T ss_pred             CCceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECCC-CCE--EEEEeCCCCCCCEeEEEEeCCCcEEE-Ee
Confidence            4553333221233445789999999987666433 4568887633 321  11111122234678999999997555 56


Q ss_pred             CCCeEEEEEe
Q psy11529        167 TDFKVRVFSA  176 (244)
Q Consensus       167 ~dg~i~i~d~  176 (244)
                      .+.+|++|..
T Consensus       262 ~n~~v~~fr~  271 (279)
T d1q7fa_         262 KDYRLYIYRY  271 (279)
T ss_dssp             TTTEEEEEEC
T ss_pred             CCCeEEEEEe
Confidence            7899999987

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.80  E-value=6.4e-06  Score=58.84  Aligned_cols=200  Identities=8%  Similarity=0.039  Sum_probs=121.8

Q ss_pred             EEEEEcCCCCeE-EEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCCCCCc
Q psy11529         13 TTHAWNNTRQQL-AFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKW   91 (244)
Q Consensus        13 ~~~~~~~~~~~l-~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~   91 (244)
                      .+..|++....| .+--..+.|.-||..+  +   ....+. ....+.++++.++|.++++ +.+ .+.++|  ..+++.
T Consensus        21 Egp~wd~~~~~l~wvDi~~~~I~r~d~~~--g---~~~~~~-~~~~~~~i~~~~dg~l~va-~~~-gl~~~d--~~tg~~   90 (295)
T d2ghsa1          21 EGPTFDPASGTAWWFNILERELHELHLAS--G---RKTVHA-LPFMGSALAKISDSKQLIA-SDD-GLFLRD--TATGVL   90 (295)
T ss_dssp             EEEEEETTTTEEEEEEGGGTEEEEEETTT--T---EEEEEE-CSSCEEEEEEEETTEEEEE-ETT-EEEEEE--TTTCCE
T ss_pred             eCCeEECCCCEEEEEECCCCEEEEEECCC--C---eEEEEE-CCCCcEEEEEecCCCEEEE-EeC-ccEEee--ccccee
Confidence            456788754444 4434568899999877  3   333333 4567889999988877665 444 588899  777774


Q ss_pred             eeeEEEec--cCcceEEEEECCCCCeEEEeeC----CCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEE-E
Q psy11529         92 KPTLVLLR--INRAATCVKWSPLENKFAAGSG----ARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLG-C  164 (244)
Q Consensus        92 ~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~----d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~-~  164 (244)
                      ........  ....++.+.+.|+|++.++...    .+.-.+|.+..++.    ..... .-...+.++|+++++.++ +
T Consensus        91 ~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~----~~~~~-~~~~~Ng~~~s~d~~~l~~~  165 (295)
T d2ghsa1          91 TLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKV----TKLFA-DISIPNSICFSPDGTTGYFV  165 (295)
T ss_dssp             EEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEE----EEEEE-EESSEEEEEECTTSCEEEEE
T ss_pred             eEEeeeecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcE----EEEee-ccCCcceeeecCCCceEEEe
Confidence            43322111  1235789999999987665432    23456676766542    12211 123557899999998554 4


Q ss_pred             eeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCC
Q psy11529        165 GSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQ  240 (244)
Q Consensus       165 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~  240 (244)
                      -+..+.|..|++........          ........+...   ......+++..+|++.++.-..+.|..||.+
T Consensus       166 dt~~~~I~~~~~d~~~~~~~----------~~~~~~~~~~~~---~g~pdG~~vD~~GnlWva~~~~g~V~~~dp~  228 (295)
T d2ghsa1         166 DTKVNRLMRVPLDARTGLPT----------GKAEVFIDSTGI---KGGMDGSVCDAEGHIWNARWGEGAVDRYDTD  228 (295)
T ss_dssp             ETTTCEEEEEEBCTTTCCBS----------SCCEEEEECTTS---SSEEEEEEECTTSCEEEEEETTTEEEEECTT
T ss_pred             ecccceeeEeeecccccccc----------cceEEEeccCcc---cccccceEEcCCCCEEeeeeCCCceEEecCC
Confidence            45577888888732211100          001112223333   4567788888888877776667778888754

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.24  E-value=6.2e-05  Score=55.46  Aligned_cols=165  Identities=10%  Similarity=-0.007  Sum_probs=94.2

Q ss_pred             CCCeEEEEe-CCccEEEEeeeCCCCCceeeEEEeccCcceEEEEECC--CCCeEEEeeCCC------------------e
Q psy11529         66 NTNRIVTCS-ADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSP--LENKFAAGSGAR------------------L  124 (244)
Q Consensus        66 ~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~------------------~  124 (244)
                      ||++++... .+++|.+.|  +.+.+......+ .....+..+...+  +..+++..+.+.                  .
T Consensus        98 DGrylFVNDkan~RVAvId--l~~fkt~kIi~i-Pn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~  174 (459)
T d1fwxa2          98 DGRFLFMNDKANTRVARVR--CDVMKCDAILEI-PNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNV  174 (459)
T ss_dssp             EEEEEEEEETTTTEEEEEE--TTTTEEEEEEEC-SSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEE
T ss_pred             ceeEEEEEcCCCceEEEEE--CcceeeeEEEec-CCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceE
Confidence            688887765 478899999  777775555543 3445566666654  455666665532                  2


Q ss_pred             EEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEeeCCC---------------eEEEEEeeecccc-------
Q psy11529        125 ISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDF---------------KVRVFSAYIKDIE-------  182 (244)
Q Consensus       125 i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg---------------~i~i~d~~~~~~~-------  182 (244)
                      +.++|.++.+.   ..+...  .+....++++|+|+++++.+.+.               .+.+++....+..       
T Consensus       175 ~t~ID~~tm~V---~~QV~V--~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~  249 (459)
T d1fwxa2         175 FTAVDADKWEV---AWQVLV--SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQ  249 (459)
T ss_dssp             EEEEETTTTEE---EEEEEE--SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSE
T ss_pred             EEEEecCCceE---EEEeee--CCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcE
Confidence            45566665543   222221  24667899999999988876431               2455554211100       


Q ss_pred             cCCCCCCCC-ccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEee-CCCcEEEEeCCCC
Q psy11529        183 SAPQSTNWG-SKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTS-HDGSINVRMSQQV  242 (244)
Q Consensus       183 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~vwd~~~~  242 (244)
                      ......... ........+..+..    ......+.++|||+++++++ .+.++.|+|++++
T Consensus       250 eingV~VVD~~~~~~~~v~~yIPV----pKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki  307 (459)
T d1fwxa2         250 ELNGVKVVDGRKEASSLFTRYIPI----ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRF  307 (459)
T ss_dssp             EETTEEEEECSGG--CSSEEEEEE----ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGH
T ss_pred             EeCCceeecccccCCcceeEEEec----CCCCCceEECCCCCEEEEeCCcCCcEEEEEehhh
Confidence            000000000 00011122333333    33456789999999887666 6889999999754

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.19  E-value=0.00031  Score=51.74  Aligned_cols=207  Identities=12%  Similarity=0.018  Sum_probs=116.9

Q ss_pred             EEEEcC---CCCeEEEec-CCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCC--CCCeEEEEeCC-----------
Q psy11529         14 THAWNN---TRQQLAFTP-NNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAP--NTNRIVTCSAD-----------   76 (244)
Q Consensus        14 ~~~~~~---~~~~l~~~~-~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d-----------   76 (244)
                      .+.+..   ||+++++.. .++.|.+.|++.  -+...+..+. ....+..+...+  +..|++..+.+           
T Consensus        89 ~~S~TdGtyDGrylFVNDkan~RVAvIdl~~--fkt~kIi~iP-n~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l  165 (459)
T d1fwxa2          89 HMSFTEGKYDGRFLFMNDKANTRVARVRCDV--MKCDAILEIP-NAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNM  165 (459)
T ss_dssp             EEEEETTEEEEEEEEEEETTTTEEEEEETTT--TEEEEEEECS-SCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSST
T ss_pred             cccccCCccceeEEEEEcCCCceEEEEECcc--eeeeEEEecC-CCCCCceeecccCCCeEEEEccCccccccCCCCccc
Confidence            445543   788877664 578999999977  3222333443 344556666654  55577766542           


Q ss_pred             -------ccEEEEeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCC---------------eEEEEEe----
Q psy11529         77 -------RNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGAR---------------LISVCYF----  130 (244)
Q Consensus        77 -------~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~---------------~i~i~d~----  130 (244)
                             +.+.+.|  ..+.+.......   ......+.++|+|+++++.+.+.               .+.++++    
T Consensus       166 ~d~~~y~~~~t~ID--~~tm~V~~QV~V---~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie  240 (459)
T d1fwxa2         166 EDVANYVNVFTAVD--ADKWEVAWQVLV---SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIE  240 (459)
T ss_dssp             TCGG-EEEEEEEEE--TTTTEEEEEEEE---SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHH
T ss_pred             cchhhcceEEEEEe--cCCceEEEEeee---CCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhH
Confidence                   2355667  666554333332   34567899999999988866421               1334443    


Q ss_pred             -------------------ecCCCceEEEeeecCCCCceeEEEecCCCCEEEEee-CCCeEEEEEeeecccccCCCCCCC
Q psy11529        131 -------------------ESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGS-TDFKVRVFSAYIKDIESAPQSTNW  190 (244)
Q Consensus       131 -------------------~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~  190 (244)
                                         +.........  ..+.......+..+|||+++++++ -+.++.|+|++.-+.......   
T Consensus       241 ~av~~Gk~~eingV~VVD~~~~~~~~v~~--yIPVpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~---  315 (459)
T d1fwxa2         241 KAIAAGDYQELNGVKVVDGRKEASSLFTR--YIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENA---  315 (459)
T ss_dssp             HHHHHTCSEEETTEEEEECSGG--CSSEE--EEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC---
T ss_pred             HhhhcCCcEEeCCceeecccccCCcceeE--EEecCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccC---
Confidence                               2110000000  111123456789999999887766 478999999853321110000   


Q ss_pred             CccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCC
Q psy11529        191 GSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQ  240 (244)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~  240 (244)
                         ........+...    .-.-..-+|...|.-..+---|..|.-|++.
T Consensus       316 ---~~~~~~~~e~el----glgPLht~fd~~g~aytslfids~v~kw~~~  358 (459)
T d1fwxa2         316 ---DPRSAVVAEPEL----GLGPLHTAFDGRGNAYTSLFLDSQVVKWNIE  358 (459)
T ss_dssp             ----GGGGEEECCBC----CSCEEEEEECTTSEEEEEETTTTEEEEEEHH
T ss_pred             ---CccccEEeeccc----CcCccccccCCCceEEEEeeccceEEEEecc
Confidence               011122222222    4445667888887655555579999999974

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.13  E-value=0.0002  Score=49.93  Aligned_cols=97  Identities=12%  Similarity=0.133  Sum_probs=60.7

Q ss_pred             EeCCC--CCeEEEEeCCccEEEEeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeC----CCeEEEEEeecCCC
Q psy11529         62 DWAPN--TNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSG----ARLISVCYFESEND  135 (244)
Q Consensus        62 ~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----d~~i~i~d~~~~~~  135 (244)
                      ..+|+  |+.++..+ ++.|.+.|  +.+++.   ..+..+.......+|||||+.||....    +....+|-++....
T Consensus         5 ~~sPdi~G~~v~f~~-~~dl~~~d--~~~g~~---~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g   78 (281)
T d1k32a2           5 LLNPDIHGDRIIFVC-CDDLWEHD--LKSGST---RKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENG   78 (281)
T ss_dssp             CEEEEEETTEEEEEE-TTEEEEEE--TTTCCE---EEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTT
T ss_pred             ccCCCCCCCEEEEEe-CCcEEEEE--CCCCCE---EEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCC
Confidence            35788  99888765 45677778  777763   334556778889999999999987542    22233444443332


Q ss_pred             ceEEEeeec------CCCCceeEEEecCCCCEEEEee
Q psy11529        136 WWVAKHIKK------PIKSTITCLDWHPNNHLLGCGS  166 (244)
Q Consensus       136 ~~~~~~~~~------~~~~~v~~~~~~p~~~~l~~~~  166 (244)
                        .......      ..........|+|+|+.|+...
T Consensus        79 --~~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~  113 (281)
T d1k32a2          79 --EIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTD  113 (281)
T ss_dssp             --EEEECCCCCEEEETTEECSEEEEECTTCCEEEEEC
T ss_pred             --ceEEeeecCCCccCccccccccccCCCCCEEEEEE
Confidence              1111111      1123456788999999888754

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.67  E-value=0.0034  Score=43.51  Aligned_cols=198  Identities=9%  Similarity=-0.018  Sum_probs=114.4

Q ss_pred             CCceEEEEEcCCCCeEEEe-cCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEE-eCCccEEEEeeeC
Q psy11529          9 INPVTTHAWNNTRQQLAFT-PNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTC-SADRNAYVWTQNN   86 (244)
Q Consensus         9 ~~~v~~~~~~~~~~~l~~~-~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~iwd~~~   86 (244)
                      ...+.+++|.+..+.+..+ ..++.|+..++++  .  .....+......+.++++..-+..|+.+ ...+.|.+.+  +
T Consensus        35 ~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g--~--~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~--~  108 (263)
T d1npea_          35 AKVIIGLAFDCVDKVVYWTDISEPSIGRASLHG--G--EPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAK--M  108 (263)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEEESSS--C--CCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEE--T
T ss_pred             CCcEEEEEEEeCCCEEEEEECCCCeEEEEEccc--C--CcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEe--c
Confidence            3456778998877766655 4567888888876  3  2222233233567889998756666544 4567899998  5


Q ss_pred             CCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCC-CeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEe
Q psy11529         87 DDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGA-RLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCG  165 (244)
Q Consensus        87 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~  165 (244)
                      ...... .+ .......+..++++|...+++..... +..+|+........  ........-.....+++++.++.|+.+
T Consensus       109 dg~~~~-~l-~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~--~~~i~~~~~~~P~glaiD~~~~~lYw~  184 (263)
T d1npea_         109 DGTQRR-VL-FDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN--RRILAQDNLGLPNGLTFDAFSSQLCWV  184 (263)
T ss_dssp             TSCSCE-EE-ECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC--CEEEECTTCSCEEEEEEETTTTEEEEE
T ss_pred             CCceEE-EE-ecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCC--ceeeeeecccccceEEEeecCcEEEEE
Confidence            544321 22 22334668899999987776654432 33345544332220  112222223566899999887777655


Q ss_pred             -eCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEee-CCCcEEEEeCC
Q psy11529        166 -STDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTS-HDGSINVRMSQ  240 (244)
Q Consensus       166 -~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~vwd~~  240 (244)
                       ...+.|...++.                  .......+.+    .....++++.  +.+|+... ..+.|...|..
T Consensus       185 d~~~~~I~~~~~~------------------g~~~~~v~~~----~~~P~~lav~--~~~lYwtd~~~~~I~~~~~~  237 (263)
T d1npea_         185 DAGTHRAECLNPA------------------QPGRRKVLEG----LQYPFAVTSY--GKNLYYTDWKTNSVIAMDLA  237 (263)
T ss_dssp             ETTTTEEEEEETT------------------EEEEEEEEEC----CCSEEEEEEE--TTEEEEEETTTTEEEEEETT
T ss_pred             eCCCCEEEEEECC------------------CCCeEEEECC----CCCcEEEEEE--CCEEEEEECCCCEEEEEECC
Confidence             456788888872                  1222222232    2234577775  44555443 55677776664

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.63  E-value=0.004  Score=43.19  Aligned_cols=187  Identities=17%  Similarity=0.097  Sum_probs=106.1

Q ss_pred             eEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEe-CCccEEEEeeeCCCCCceeeEEEeccC
Q psy11529         23 QLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCS-ADRNAYVWTQNNDDKKWKPTLVLLRIN  101 (244)
Q Consensus        23 ~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~  101 (244)
                      +|+.+. ...|+-.++++  .   ....+......+.+++|++..+.++-.. ..+.|.-.+++-...............
T Consensus         3 fLl~s~-~~~I~~~~l~~--~---~~~~~~~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~   76 (266)
T d1ijqa1           3 YLFFTN-RHEVRKMTLDR--S---EYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI   76 (266)
T ss_dssp             EEEEEC-BSSEEEEETTS--C---CCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSC
T ss_pred             EEEEEC-CCeEEEEECCC--C---cceeeeCCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCC
Confidence            344443 34688888877  3   2222223455677999999877777654 355566555211111111122223334


Q ss_pred             cceEEEEECCCCCeEEEe-eCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEee--CCCeEEEEEeee
Q psy11529        102 RAATCVKWSPLENKFAAG-SGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGS--TDFKVRVFSAYI  178 (244)
Q Consensus       102 ~~v~~~~~~~~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~--~dg~i~i~d~~~  178 (244)
                      ..+..+++.+.+..|+.+ ...+.|.+.+++....    .............++++|...+|....  ..+.|.-.++  
T Consensus        77 ~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~----~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~--  150 (266)
T d1ijqa1          77 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR----KTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGL--  150 (266)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSE----EEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEET--
T ss_pred             CCcceEEEeeccceEEEEecCCCEEEeEecCCceE----EEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEecc--
Confidence            567788988766666555 4567899988876653    222333345678999999665555443  2345555554  


Q ss_pred             cccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEe-eCCCcEEEEeCC
Q psy11529        179 KDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWT-SHDGSINVRMSQ  240 (244)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~vwd~~  240 (244)
                                       .+.....+....  -.....+++.+.++.|+.+ ...+.|...++.
T Consensus       151 -----------------dGs~~~~l~~~~--~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~d  194 (266)
T d1ijqa1         151 -----------------NGVDIYSLVTEN--IQWPNGITLDLLSGRLYWVDSKLHSISSIDVN  194 (266)
T ss_dssp             -----------------TSCCEEEEECSS--CSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             -----------------CCCceecccccc--cceeeEEEeeccccEEEEecCCcCEEEEEECC
Confidence                             233333332211  3556888998877766655 345677776664

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.59  E-value=0.0072  Score=45.02  Aligned_cols=101  Identities=10%  Similarity=0.109  Sum_probs=61.3

Q ss_pred             eEEEEEcCCCCeEEEe-----cCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCC----------
Q psy11529         12 VTTHAWNNTRQQLAFT-----PNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSAD----------   76 (244)
Q Consensus        12 v~~~~~~~~~~~l~~~-----~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----------   76 (244)
                      +..+++|||++++|.+     +..-.++++|+.+  ++... ..+..  .....++|+++++.|+....+          
T Consensus       127 ~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~t--g~~~~-~~i~~--~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~  201 (430)
T d1qfma1         127 LRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDG--AKELP-DVLER--VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTE  201 (430)
T ss_dssp             EEEEEECTTSSEEEEEEEETTCSCEEEEEEETTT--TEEEE-EEEEE--ECSCCEEECTTSSEEEEEECCCCSSCCSSSC
T ss_pred             ecceEecCCCCEEEEEeccccCchheeEEeccCc--ceecc-ccccc--ccccceEEcCCCCEEEEEEeccccCcccccc
Confidence            3467889999998865     2235799999988  52211 22221  122468899999987754322          


Q ss_pred             ------ccEEEEeeeCCCCCceeeEEEeccC--cceEEEEECCCCCeEEEe
Q psy11529         77 ------RNAYVWTQNNDDKKWKPTLVLLRIN--RAATCVKWSPLENKFAAG  119 (244)
Q Consensus        77 ------~~i~iwd~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~  119 (244)
                            ..+..+.  +.+.............  ..+..+..++++++++..
T Consensus       202 ~~~~~~~~v~~h~--lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~  250 (430)
T d1qfma1         202 TSTNLHQKLYYHV--LGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLS  250 (430)
T ss_dssp             CCCCCCCEEEEEE--TTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEE
T ss_pred             cccCCcceEEEEE--CCCCccccccccccccCCceEEeeeccCCcceeeEE
Confidence                  2577777  5554433333333322  345667788998887643

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.54  E-value=0.0025  Score=46.57  Aligned_cols=115  Identities=9%  Similarity=-0.002  Sum_probs=73.1

Q ss_pred             EEEeCCCCCeEEEEeCCc-----------cEEEEeeeCCCCCceeeEEEe-ccCcceEEEEECCCCCeEEEeeCC-CeEE
Q psy11529         60 GIDWAPNTNRIVTCSADR-----------NAYVWTQNNDDKKWKPTLVLL-RINRAATCVKWSPLENKFAAGSGA-RLIS  126 (244)
Q Consensus        60 ~~~~~~~~~~l~~~~~d~-----------~i~iwd~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d-~~i~  126 (244)
                      ......+|+.++.|+.+.           .+.+||  ..++++....... .+.......++.++++.++.|+.+ ..+.
T Consensus        24 ~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd--~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~  101 (387)
T d1k3ia3          24 AAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWD--PSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTS  101 (387)
T ss_dssp             EEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEEC--TTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEE
T ss_pred             EEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEE--CCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCccee
Confidence            333445777777776421           367899  7888765543332 233345567889999998888654 5899


Q ss_pred             EEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEeeCC------CeEEEEEeeec
Q psy11529        127 VCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTD------FKVRVFSAYIK  179 (244)
Q Consensus       127 i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d------g~i~i~d~~~~  179 (244)
                      +||..+..-  ..... .+.......++..+||++++.|+.+      ..+.+||....
T Consensus       102 ~yd~~~~~w--~~~~~-~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~  157 (387)
T d1k3ia3         102 LYDSSSDSW--IPGPD-MQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSK  157 (387)
T ss_dssp             EEEGGGTEE--EECCC-CSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTT
T ss_pred             EecCccCcc--ccccc-ccccccccceeeecCCceeeeccccccccccceeeeecCCCC
Confidence            999887642  22111 1122334567777899998888753      35888998544

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.47  E-value=0.0031  Score=46.04  Aligned_cols=120  Identities=16%  Similarity=0.164  Sum_probs=77.5

Q ss_pred             CceEEEEEcCCCCeEEEecCC-----C------eEEEeeeccCCCcceeeeeec-cCCCceEEEEeCCCCCeEEEEeCC-
Q psy11529         10 NPVTTHAWNNTRQQLAFTPNN-----Q------EVHLYQYEKAANDWSQLDVLD-GHDLKVTGIDWAPNTNRIVTCSAD-   76 (244)
Q Consensus        10 ~~v~~~~~~~~~~~l~~~~~d-----~------~v~v~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d-   76 (244)
                      .++.......+|+.++.|+.+     +      .+.+||..+  +.+....... .+.......++.+++++++.|+.+ 
T Consensus        20 ~~~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t--~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~   97 (387)
T d1k3ia3          20 VPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPST--GIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDA   97 (387)
T ss_dssp             CCSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTT--CCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSST
T ss_pred             cccEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCC--CcEeecCCCCCCcccceeEEEEecCCcEEEeecCCC
Confidence            445555566688988888742     1      377899987  5555443332 233334466788999999888654 


Q ss_pred             ccEEEEeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCC------CeEEEEEeecCC
Q psy11529         77 RNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGA------RLISVCYFESEN  134 (244)
Q Consensus        77 ~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------~~i~i~d~~~~~  134 (244)
                      ..+.+||  ..+..+.....+ .....-...+..++++.++.++.+      ..+.+||..+.+
T Consensus        98 ~~~~~yd--~~~~~w~~~~~~-~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~  158 (387)
T d1k3ia3          98 KKTSLYD--SSSDSWIPGPDM-QVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT  158 (387)
T ss_dssp             TCEEEEE--GGGTEEEECCCC-SSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred             cceeEec--CccCcccccccc-cccccccceeeecCCceeeeccccccccccceeeeecCCCCc
Confidence            6899999  677665433222 122334567778899998888753      357888876653

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.43  E-value=0.0077  Score=41.63  Aligned_cols=192  Identities=10%  Similarity=0.040  Sum_probs=110.7

Q ss_pred             CCeEEEecCCCeEEEeeeccCC-CcceeeeeeccCCCceEEEEeCCCCCeEEEEe-CCccEEEEeeeCCCCCceeeEEEe
Q psy11529         21 RQQLAFTPNNQEVHLYQYEKAA-NDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCS-ADRNAYVWTQNNDDKKWKPTLVLL   98 (244)
Q Consensus        21 ~~~l~~~~~d~~v~v~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~   98 (244)
                      |.+|+.+. .+.|+-.+++... ........+..+...+.+++|.+..+.++.+. .++.|+..+  +...... .. ..
T Consensus         1 ~~fLl~s~-~~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~--l~g~~~~-~v-~~   75 (263)
T d1npea_           1 GTHLLFAQ-TGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRAS--LHGGEPT-TI-IR   75 (263)
T ss_dssp             CEEEEEEE-EEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEE--SSSCCCE-EE-EC
T ss_pred             CCEEEEeC-CCeEEEEECCCccccccccccccccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEE--cccCCcE-EE-EE
Confidence            34555554 3678777876511 00112223344455678899998777776654 467787777  5544322 22 22


Q ss_pred             ccCcceEEEEECCCCCeEEEe-eCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEeeCC-CeEEEEEe
Q psy11529         99 RINRAATCVKWSPLENKFAAG-SGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTD-FKVRVFSA  176 (244)
Q Consensus        99 ~~~~~v~~~~~~~~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d-g~i~i~d~  176 (244)
                      .....+..+++..-+..|+.+ ...+.|.+.+++....    ..........+..++++|...+++..... +.-+|+..
T Consensus        76 ~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~----~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~  151 (263)
T d1npea_          76 QDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR----RVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETS  151 (263)
T ss_dssp             TTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC----EEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEE
T ss_pred             eccccccEEEEeccCCeEEEeccCCCEEEEEecCCceE----EEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEe
Confidence            334568889998766666554 4567899988876654    22223333568899999977766654322 23345544


Q ss_pred             eecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEee-CCCcEEEEeCC
Q psy11529        177 YIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTS-HDGSINVRMSQ  240 (244)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~vwd~~  240 (244)
                      .                 ..+.....+....  -.....+++.+.++.|+... ..+.|...+++
T Consensus       152 ~-----------------~dG~~~~~i~~~~--~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~  197 (263)
T d1npea_         152 H-----------------MDGTNRRILAQDN--LGLPNGLTFDAFSSQLCWVDAGTHRAECLNPA  197 (263)
T ss_dssp             E-----------------TTSCCCEEEECTT--CSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             c-----------------CCCCCceeeeeec--ccccceEEEeecCcEEEEEeCCCCEEEEEECC
Confidence            2                 1122222222110  35567899988777776553 46677777664

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.36  E-value=0.0098  Score=41.16  Aligned_cols=160  Identities=9%  Similarity=-0.059  Sum_probs=91.9

Q ss_pred             CCceEEEEEcCCCCeEEEec-CCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEE-eCCccEEEEeeeC
Q psy11529          9 INPVTTHAWNNTRQQLAFTP-NNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTC-SADRNAYVWTQNN   86 (244)
Q Consensus         9 ~~~v~~~~~~~~~~~l~~~~-~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~iwd~~~   86 (244)
                      ...+.+++|.+..+.|..+. ..+.|.-.++.+..........+......+.++++.+.+..|+.+ ...++|.+.+  +
T Consensus        29 ~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~--~  106 (266)
T d1ijqa1          29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVAD--T  106 (266)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEE--T
T ss_pred             CCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccceEEEEecCCCEEEeEe--c
Confidence            34567888888777666553 456676666643111001122223233456778888755555544 4567899999  5


Q ss_pred             CCCCceeeEEEeccCcceEEEEECCCCCeEEEeeC--CCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEE
Q psy11529         87 DDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSG--ARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGC  164 (244)
Q Consensus        87 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~  164 (244)
                      ..... .. ...........++++|...+|+....  .+.|.-.+++....    .......-.....+++++.++.|+.
T Consensus       107 ~g~~~-~~-~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~----~~l~~~~~~~p~gl~iD~~~~~lYw  180 (266)
T d1ijqa1         107 KGVKR-KT-LFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI----YSLVTENIQWPNGITLDLLSGRLYW  180 (266)
T ss_dssp             TSSSE-EE-EEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE----EEEECSSCSCEEEEEEETTTTEEEE
T ss_pred             CCceE-EE-EEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCce----ecccccccceeeEEEeeccccEEEE
Confidence            54432 22 22344566889999987666665543  33455544444332    2222222356789999998776666


Q ss_pred             e-eCCCeEEEEEe
Q psy11529        165 G-STDFKVRVFSA  176 (244)
Q Consensus       165 ~-~~dg~i~i~d~  176 (244)
                      + ...+.|...++
T Consensus       181 ~d~~~~~I~~~~~  193 (266)
T d1ijqa1         181 VDSKLHSISSIDV  193 (266)
T ss_dssp             EETTTTEEEEEET
T ss_pred             ecCCcCEEEEEEC
Confidence            5 44678888886

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=97.19  E-value=0.02  Score=41.22  Aligned_cols=199  Identities=12%  Similarity=0.065  Sum_probs=108.3

Q ss_pred             CCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeC------CCCCeEEEEeC--C--ccEEEEeeeCCCC
Q psy11529         20 TRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWA------PNTNRIVTCSA--D--RNAYVWTQNNDDK   89 (244)
Q Consensus        20 ~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~------~~~~~l~~~~~--d--~~i~iwd~~~~~~   89 (244)
                      +..+++.....+-|++||+++     +.+..+.  .+.++.+..-      ....-++.++.  +  .+|.+|.++....
T Consensus        39 ~~SlI~gTdK~~Gl~vYdL~G-----~~l~~~~--~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~  111 (353)
T d1h6la_          39 QNSKLITTNKKSGLAVYSLEG-----KMLHSYH--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNG  111 (353)
T ss_dssp             GGCEEEEEETTSCCEEEETTC-----CEEEECC--SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTT
T ss_pred             CccEEEEEcCcCCEEEEcCCC-----cEEEecc--cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCccc
Confidence            445666666666799999987     5555554  3566665533      22223444442  2  3677888532222


Q ss_pred             CceeeEE-----EeccCcceEEEEE--CCC-CC-eEEEeeCCCeEEEEEeecCCC--ceEEEeeecCCCCceeEEEecCC
Q psy11529         90 KWKPTLV-----LLRINRAATCVKW--SPL-EN-KFAAGSGARLISVCYFESEND--WWVAKHIKKPIKSTITCLDWHPN  158 (244)
Q Consensus        90 ~~~~~~~-----~~~~~~~v~~~~~--~~~-~~-~l~~~~~d~~i~i~d~~~~~~--~~~~~~~~~~~~~~v~~~~~~p~  158 (244)
                      .. ....     .......++.+++  +|. +. ++++...+|.+..|.+.....  ..............+..|.+.+.
T Consensus       112 ~l-~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~~q~EGCVvDde  190 (353)
T d1h6la_         112 TL-QSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMNSQTEGMAADDE  190 (353)
T ss_dssp             EE-EECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECSSCEEEEEEETT
T ss_pred             cc-ccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCCCccceEEEeCC
Confidence            11 1110     0111234666666  665 44 456667789999988754332  11111112233467899999999


Q ss_pred             CCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecC-CCCCCCCeEEEEEec--CCC-EE-EEeeCCCc
Q psy11529        159 NHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNN-SSSGGGWIHSVAFSK--DGN-KL-CWTSHDGS  233 (244)
Q Consensus       159 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~s~--~~~-~l-~~~~~dg~  233 (244)
                      .+.|+.+-++..|..++......             .....+....+ +-  ...+..++.-.  ++. || ++.-.+++
T Consensus       191 ~~~LyisEE~~Giw~~~a~~~~~-------------~~~~~i~~~~g~~l--~~D~EGlaiy~~~~~~GylivSsQG~n~  255 (353)
T d1h6la_         191 YGSLYIAEEDEAIWKFSAEPDGG-------------SNGTVIDRADGRHL--TPDIEGLTIYYAADGKGYLLASSQGNSS  255 (353)
T ss_dssp             TTEEEEEETTTEEEEEESSTTSC-------------SCCEEEEECSSSSC--CSCEEEEEEEECGGGCEEEEEEEGGGTE
T ss_pred             CCcEEEecCccceEEEEeccCCC-------------ccceeeecccCccc--cCCccccEEEEcCCCCeEEEEEcCCCCe
Confidence            88999988876665555421110             11222222222 11  45677776543  333 44 44446788


Q ss_pred             EEEEeCCC
Q psy11529        234 INVRMSQQ  241 (244)
Q Consensus       234 i~vwd~~~  241 (244)
                      ..|||.+.
T Consensus       256 f~vydr~~  263 (353)
T d1h6la_         256 YAIYERQG  263 (353)
T ss_dssp             EEEEESST
T ss_pred             EEEEecCC
Confidence            99999764

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=97.16  E-value=0.021  Score=40.98  Aligned_cols=161  Identities=9%  Similarity=0.095  Sum_probs=90.9

Q ss_pred             ceEEEEEcCCCCeEEEecC------------CCeEEEeeeccCCCcceeeeeeccC-----CCceEEEEe--CCCCC-eE
Q psy11529         11 PVTTHAWNNTRQQLAFTPN------------NQEVHLYQYEKAANDWSQLDVLDGH-----DLKVTGIDW--APNTN-RI   70 (244)
Q Consensus        11 ~v~~~~~~~~~~~l~~~~~------------d~~v~v~~~~~~~~~~~~~~~~~~~-----~~~v~~~~~--~~~~~-~l   70 (244)
                      ...+++..|+|..+++++.            .|.|.++|+.++......+ .+.+.     .-.-..+..  .++++ +|
T Consensus        36 G~EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l-~~~~~~~~~~~f~PhGi~l~~~~dg~~~L  114 (340)
T d1v04a_          36 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSEL-EIIGNTLDISSFNPHGISTFIDDDNTVYL  114 (340)
T ss_dssp             CCCEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEEC-EEECSSSCGGGCCEEEEEEEECTTCCEEE
T ss_pred             CcceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEE-EecCCCCCCcceeccceeEEEcCCCcEEE
Confidence            3456888899987766542            4899999987632211111 22211     112234443  45665 34


Q ss_pred             EEEe---CCccEEEEeeeCCCCCceeeEEEec-cCcceEEEEECCCCCeEEEeeC---------------CCeEEEEEee
Q psy11529         71 VTCS---ADRNAYVWTQNNDDKKWKPTLVLLR-INRAATCVKWSPLENKFAAGSG---------------ARLISVCYFE  131 (244)
Q Consensus        71 ~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~---------------d~~i~i~d~~  131 (244)
                      ++..   ...+|.+|++.....+......... .....+.+++..++..+++-..               -....+|.++
T Consensus       115 ~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~  194 (340)
T d1v04a_         115 LVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYS  194 (340)
T ss_dssp             EEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEEC
T ss_pred             EEEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEc
Confidence            4432   3567888885333333222222211 2345788888888887777311               1234566665


Q ss_pred             cCCCceEEEeeecCCCCceeEEEecCCCCEEEEe-eCCCeEEEEEee
Q psy11529        132 SENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCG-STDFKVRVFSAY  177 (244)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~-~~dg~i~i~d~~  177 (244)
                      .+..    ..... .-...+.++++||+++|+++ +..++|+.|++.
T Consensus       195 ~~~~----~~~~~-~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~  236 (340)
T d1v04a_         195 PNDV----RVVAE-GFDFANGINISPDGKYVYIAELLAHKIHVYEKH  236 (340)
T ss_dssp             SSCE----EEEEE-EESSEEEEEECTTSSEEEEEEGGGTEEEEEEEC
T ss_pred             CCce----EEEcC-CCCccceeEECCCCCEEEEEeCCCCeEEEEEeC
Confidence            5543    11111 22467899999999876655 457789999984

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.00  E-value=0.026  Score=39.34  Aligned_cols=109  Identities=12%  Similarity=0.213  Sum_probs=68.5

Q ss_pred             EEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCCCCCcee
Q psy11529         14 THAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKWKP   93 (244)
Q Consensus        14 ~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~   93 (244)
                      +.-.+|..+.||.-+ ..+++|||++.  .  +.+..+. ..+.|.--.|-.+ +.|+..+ +..|+-|+  ++... .+
T Consensus        67 sAIMhP~~~IiALra-g~~LQiFnlet--K--~klks~~-~~e~VvfWkWis~-~~L~lVT-~taVYHW~--~~g~s-~P  135 (327)
T d1utca2          67 SAIMNPASKVIALKA-GKTLQIFNIEM--K--SKMKAHT-MTDDVTFWKWISL-NTVALVT-DNAVYHWS--MEGES-QP  135 (327)
T ss_dssp             EEEECSSSSEEEEEE-TTEEEEEETTT--T--EEEEEEE-CSSCCCEEEESSS-SEEEEEC-SSEEEEEE--SSSSC-CC
T ss_pred             hhhcCCCCcEEEEec-CCeEEEEehhH--h--hhhceEE-cCCCcEEEEecCC-CEEEEEc-CCceEEEc--ccCCC-Cc
Confidence            345678888887765 56899999988  4  5555555 4567777788753 4555554 55899999  43322 23


Q ss_pred             eEEEecc----CcceEEEEECCCCCeEEEeeC-------CCeEEEEEeecC
Q psy11529         94 TLVLLRI----NRAATCVKWSPLENKFAAGSG-------ARLISVCYFESE  133 (244)
Q Consensus        94 ~~~~~~~----~~~v~~~~~~~~~~~l~~~~~-------d~~i~i~d~~~~  133 (244)
                      ...+..|    ...|-.-..+++.++++..+-       .|.+.+|..+..
T Consensus       136 ~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~  186 (327)
T d1utca2         136 VKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK  186 (327)
T ss_dssp             EEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT
T ss_pred             hhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccC
Confidence            4333443    345667777888887665431       345666665443

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=96.77  E-value=0.049  Score=39.02  Aligned_cols=161  Identities=11%  Similarity=0.086  Sum_probs=90.3

Q ss_pred             ceEEEEeCCCCCeEEEEeC------------CccEEEEeeeCCCCCcee-eEEEeccC-----cceEEEEE--CCCCCe-
Q psy11529         57 KVTGIDWAPNTNRIVTCSA------------DRNAYVWTQNNDDKKWKP-TLVLLRIN-----RAATCVKW--SPLENK-  115 (244)
Q Consensus        57 ~v~~~~~~~~~~~l~~~~~------------d~~i~iwd~~~~~~~~~~-~~~~~~~~-----~~v~~~~~--~~~~~~-  115 (244)
                      ....++..|+|..+++++.            .|.|.++|  +.+..... .+...+..     -....+..  .+++.. 
T Consensus        36 G~EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~d--l~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~  113 (340)
T d1v04a_          36 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMD--LNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVY  113 (340)
T ss_dssp             CCCEEEECTTSEEEEEECCCC--------CCCCEEEEEE--TTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEE
T ss_pred             CcceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEe--cCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEE
Confidence            3456788888877766542            38899999  55443221 22222111     12334443  455553 


Q ss_pred             EEEee---CCCeEEEEEeecCCCceE-EEeeecCCCCceeEEEecCCCCEEEEeeC---C------------CeEEEEEe
Q psy11529        116 FAAGS---GARLISVCYFESENDWWV-AKHIKKPIKSTITCLDWHPNNHLLGCGST---D------------FKVRVFSA  176 (244)
Q Consensus       116 l~~~~---~d~~i~i~d~~~~~~~~~-~~~~~~~~~~~v~~~~~~p~~~~l~~~~~---d------------g~i~i~d~  176 (244)
                      |++..   ...+|.+|++........ ......+.....+++++..++.+++|-..   +            +.-.+|..
T Consensus       114 L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~  193 (340)
T d1v04a_         114 LLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYY  193 (340)
T ss_dssp             EEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEE
T ss_pred             EEEEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEE
Confidence            55543   356788999876654111 12222333456789999999988887321   1            12233333


Q ss_pred             eecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEe-eCCCcEEEEeCCC
Q psy11529        177 YIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWT-SHDGSINVRMSQQ  241 (244)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~vwd~~~  241 (244)
                                        ..++......+    -...+.++++||+++|+.+ +..+.|++|+++.
T Consensus       194 ------------------~~~~~~~~~~~----l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~  237 (340)
T d1v04a_         194 ------------------SPNDVRVVAEG----FDFANGINISPDGKYVYIAELLAHKIHVYEKHA  237 (340)
T ss_dssp             ------------------CSSCEEEEEEE----ESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred             ------------------cCCceEEEcCC----CCccceeEECCCCCEEEEEeCCCCeEEEEEeCC
Confidence                              11222111222    3567899999999877655 4677899988763

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=96.69  E-value=0.085  Score=40.66  Aligned_cols=79  Identities=15%  Similarity=0.126  Sum_probs=46.8

Q ss_pred             eEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEe
Q psy11529        124 LISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVEL  203 (244)
Q Consensus       124 ~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (244)
                      .+.-+|+++++..|..........+.     ....+.++++|+.||.++-+|.                  .+++.+-++
T Consensus       445 ~l~AiD~~TG~~~W~~~~~~~~~~g~-----l~TagglVf~G~~dg~l~A~Da------------------~tGe~lW~~  501 (571)
T d2ad6a1         445 QIRAFDLTTGKAKWTKWEKFAAWGGT-----LYTKGGLVWYATLDGYLKALDN------------------KDGKELWNF  501 (571)
T ss_dssp             EEEEECTTTCCEEEEEEESSCCCSBC-----EEETTTEEEEECTTSEEEEEET------------------TTCCEEEEE
T ss_pred             cEEEeccCCCceeeEcCCCCCCCcce-----eEecCCEEEEECCCCeEEEEEC------------------CCCcEEEEE
Confidence            45555666665544333221111111     1224667888999999999999                  789999887


Q ss_pred             cCCCCCCCCeEEEEEecCCC-EEEE
Q psy11529        204 NNSSSGGGWIHSVAFSKDGN-KLCW  227 (244)
Q Consensus       204 ~~~~~~~~~v~~~~~s~~~~-~l~~  227 (244)
                      ....  ...-.-+.|..||+ |++.
T Consensus       502 ~l~~--~~~a~P~ty~~dGkqYi~v  524 (571)
T d2ad6a1         502 KMPS--GGIGSPMTYSFKGKQYIGS  524 (571)
T ss_dssp             ECSS--CCCSCCEEEEETTEEEEEE
T ss_pred             ECCC--CceecceEEEECCEEEEEE
Confidence            6531  22222366777887 5543

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.52  E-value=0.091  Score=38.85  Aligned_cols=117  Identities=8%  Similarity=0.008  Sum_probs=68.6

Q ss_pred             CCceEEEEeCCCCCeEEEEe-----CCccEEEEeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCC-------
Q psy11529         55 DLKVTGIDWAPNTNRIVTCS-----ADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGA-------  122 (244)
Q Consensus        55 ~~~v~~~~~~~~~~~l~~~~-----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-------  122 (244)
                      .-.+..+++||++++++.+-     ....++++|  +.+++..... +.  ......++|.++++.|+....+       
T Consensus       124 ~~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~D--l~tg~~~~~~-i~--~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~  198 (430)
T d1qfma1         124 TVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMK--VDGAKELPDV-LE--RVKFSCMAWTHDGKGMFYNAYPQQDGKSD  198 (430)
T ss_dssp             CEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEE--TTTTEEEEEE-EE--EECSCCEEECTTSSEEEEEECCCCSSCCS
T ss_pred             cceecceEecCCCCEEEEEeccccCchheeEEec--cCcceecccc-cc--cccccceEEcCCCCEEEEEEeccccCccc
Confidence            33455678899999888542     234688999  8888754322 21  1223578999999987765432       


Q ss_pred             ---------CeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEeeC---CCeEEEEEe
Q psy11529        123 ---------RLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGST---DFKVRVFSA  176 (244)
Q Consensus       123 ---------~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~---dg~i~i~d~  176 (244)
                               ..+..+.+.+.................+..+..++++++++....   ++...+|-+
T Consensus       199 ~~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~  264 (430)
T d1qfma1         199 GTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYC  264 (430)
T ss_dssp             SSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEE
T ss_pred             ccccccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEe
Confidence                     246666665554322222222222345667888999998764332   334445544

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=96.46  E-value=0.1  Score=38.86  Aligned_cols=57  Identities=11%  Similarity=0.133  Sum_probs=40.3

Q ss_pred             CCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeec------cCCCceEEEEeCCC
Q psy11529          8 GINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLD------GHDLKVTGIDWAPN   66 (244)
Q Consensus         8 ~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~------~~~~~v~~~~~~~~   66 (244)
                      .-+.-++|+|.|||++|++--..|.|++++..+  +....+..+.      .-+.....++|+|+
T Consensus        25 ~L~~P~~la~~pdg~llVter~~G~i~~v~~~~--g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          25 NLNKPHALLWGPDNQIWLTERATGKILRVNPES--GSVKTVFQVPEIVNDADGQNGLLGFAFHPD   87 (450)
T ss_dssp             CCSSEEEEEECTTSCEEEEETTTCEEEEECTTT--CCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             CCCCceEEEEeCCCeEEEEEecCCEEEEEECCC--CcEeecccCCccccccCCCCceeeEEeCCC
Confidence            345677999999999988875579999998766  4334433332      12456789999994

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.21  E-value=0.18  Score=39.06  Aligned_cols=79  Identities=13%  Similarity=0.078  Sum_probs=47.2

Q ss_pred             CeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEE
Q psy11529        123 RLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVE  202 (244)
Q Consensus       123 ~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (244)
                      |.+.-||..+++..|........     ..-.++..|.+++.|+.||.++-+|.                  .+++.+-+
T Consensus       453 G~l~A~D~~TG~~~W~~~~~~~~-----~gg~lsTagglVF~G~~Dg~l~A~Da------------------~TGe~LW~  509 (596)
T d1w6sa_         453 GQIKAYNAITGDYKWEKMERFAV-----WGGTMATAGDLVFYGTLDGYLKARDS------------------DTGDLLWK  509 (596)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCC-----CSBCEEETTTEEEEECTTSEEEEEET------------------TTCCEEEE
T ss_pred             ceEEEEeCCCCceecccCCCCCC-----ccceeEecCCEEEEECCCCeEEEEEC------------------CCCcEeeE
Confidence            34556666666554433222111     11122335678888999999999999                  78999988


Q ss_pred             ecCCCCCCCCeEEEEEecCCC-EEE
Q psy11529        203 LNNSSSGGGWIHSVAFSKDGN-KLC  226 (244)
Q Consensus       203 ~~~~~~~~~~v~~~~~s~~~~-~l~  226 (244)
                      +....  ...-.-+.|..||+ |++
T Consensus       510 ~~~~~--~~~a~P~tY~~dGkQYva  532 (596)
T d1w6sa_         510 FKIPS--GAIGYPMTYTHKGTQYVA  532 (596)
T ss_dssp             EECSS--CCCSCCEEEEETTEEEEE
T ss_pred             EECCC--CcccCCeEEEECCEEEEE
Confidence            87542  12222355667887 444

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=96.16  E-value=0.16  Score=37.86  Aligned_cols=110  Identities=10%  Similarity=0.059  Sum_probs=63.3

Q ss_pred             CceEEEEeCCCCCeEEEEeCCccEEEEeeeCCCCCceeeEEEe------ccCcceEEEEECCC---CCeEEEeeC-----
Q psy11529         56 LKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLL------RINRAATCVKWSPL---ENKFAAGSG-----  121 (244)
Q Consensus        56 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~------~~~~~v~~~~~~~~---~~~l~~~~~-----  121 (244)
                      ..-++|+|.|+++.|++--..|+|++++  ..++.......+.      ........|+|+|+   ..++.....     
T Consensus        27 ~~P~~la~~pdg~llVter~~G~i~~v~--~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~iYvsyt~~~~~  104 (450)
T d1crua_          27 NKPHALLWGPDNQIWLTERATGKILRVN--PESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPK  104 (450)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEEC--TTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTT
T ss_pred             CCceEEEEeCCCeEEEEEecCCEEEEEE--CCCCcEeecccCCccccccCCCCceeeEEeCCCCccCCEEEEEEecCCCC
Confidence            4567999999999887764579999988  6676644333322      12356788999996   334443211     


Q ss_pred             ------CC--eEEEEEeecCCCceEE-----EeeecCCCCceeEEEecCCCCEEEEeeC
Q psy11529        122 ------AR--LISVCYFESENDWWVA-----KHIKKPIKSTITCLDWHPNNHLLGCGST  167 (244)
Q Consensus       122 ------d~--~i~i~d~~~~~~~~~~-----~~~~~~~~~~v~~~~~~p~~~~l~~~~~  167 (244)
                            ..  .+..+..+........     .............+.|.|||.++++.++
T Consensus       105 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~H~gg~l~fgpDG~LYvs~Gd  163 (450)
T d1crua_         105 STDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD  163 (450)
T ss_dssp             C--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred             CcccccccceEEEeeecccccccccceEEEeecccccccccccceeEcCCCCEEEEecC
Confidence                  01  2334444433321111     1111122235678999999987666553

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.14  E-value=0.11  Score=36.11  Aligned_cols=156  Identities=10%  Similarity=0.021  Sum_probs=94.6

Q ss_pred             CCceEEEEEcCCCCeEEEec-------CCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCC---CeEEEEe---C
Q psy11529          9 INPVTTHAWNNTRQQLAFTP-------NNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNT---NRIVTCS---A   75 (244)
Q Consensus         9 ~~~v~~~~~~~~~~~l~~~~-------~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~---~   75 (244)
                      ...|-.-..+++.++++..+       -.|.+.+|+.+.     +..+.+++|.+.-..+...-+.   ..++.+.   .
T Consensus       147 ~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er-----~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~  221 (327)
T d1utca2         147 GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-----KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQA  221 (327)
T ss_dssp             TCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTT-----TEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETT
T ss_pred             CceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEecc-----CcCccccceeeeeEEEEcCCCCCCceEEEEEECCCC
Confidence            35666777788888766542       247899999988     6778889887665555544221   2343332   2


Q ss_pred             CccEEEEeeeCC-CCCce---eeEEEe----ccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCC
Q psy11529         76 DRNAYVWTQNND-DKKWK---PTLVLL----RINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIK  147 (244)
Q Consensus        76 d~~i~iwd~~~~-~~~~~---~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~  147 (244)
                      .+++++.++... .+...   ....+.    ...+-.-++..++.-..++..+.-|.+.+||++++...+..+.    ..
T Consensus       222 ~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~G~i~lyDleTgt~i~~nRI----s~  297 (327)
T d1utca2         222 GGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRI----SG  297 (327)
T ss_dssp             EEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEEC----CS
T ss_pred             CcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEecCcEEEEEEcccccEEEEeec----CC
Confidence            368888885321 11111   011111    1134456788888878899999999999999999986222221    23


Q ss_pred             CceeEEEecCCCCEEEEeeCCCeEEE
Q psy11529        148 STITCLDWHPNNHLLGCGSTDFKVRV  173 (244)
Q Consensus       148 ~~v~~~~~~p~~~~l~~~~~dg~i~i  173 (244)
                      ..|...+-+.+..-++.-..+|.|..
T Consensus       298 ~~iF~~a~~~~~~Gi~~VNr~GqVl~  323 (327)
T d1utca2         298 ETIFVTAPHEATAGIIGVNRKGQVLS  323 (327)
T ss_dssp             SCEEEEEEETTTTEEEEEETTSEEEE
T ss_pred             CceEEeccCCCCceEEEECCCCeEEE
Confidence            45554444444445555567776654

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=96.09  E-value=0.2  Score=38.46  Aligned_cols=80  Identities=14%  Similarity=0.115  Sum_probs=48.9

Q ss_pred             CeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEE
Q psy11529        123 RLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVE  202 (244)
Q Consensus       123 ~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (244)
                      |.+.-+|+.+++..|......     ....-.+.-.+.++++|+.||.++-+|.                  .+++.+-+
T Consensus       438 G~l~A~D~~tGk~~W~~~~~~-----~~~gg~l~TagglVF~G~~dg~l~A~Da------------------~tGe~LW~  494 (560)
T d1kv9a2         438 GALLAWDPVKQKAAWKVPYPT-----HWNGGTLSTAGNLVFQGTAAGQMHAYSA------------------DKGEALWQ  494 (560)
T ss_dssp             EEEEEEETTTTEEEEEEEESS-----SCCCCEEEETTTEEEEECTTSEEEEEET------------------TTCCEEEE
T ss_pred             cceEEEeCCCCeEeeeccCCC-----CCCCceeEECCCEEEEECCCCcEEEEEC------------------CCCcEeEE
Confidence            456677777776544433221     1111122335668888999999999999                  78999888


Q ss_pred             ecCCCCCCCCeEEEEEecCCC-EEEE
Q psy11529        203 LNNSSSGGGWIHSVAFSKDGN-KLCW  227 (244)
Q Consensus       203 ~~~~~~~~~~v~~~~~s~~~~-~l~~  227 (244)
                      ++...  ...-.-+.|..+|+ ||+.
T Consensus       495 ~~l~~--~~~~~P~ty~~dGkqyv~v  518 (560)
T d1kv9a2         495 FEAQS--GIVAAPMTFELAGRQYVAI  518 (560)
T ss_dssp             EECSS--CCCSCCEEEEETTEEEEEE
T ss_pred             EECCC--CccccCEEEEECCEEEEEE
Confidence            77642  11112356667887 5543

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.96  E-value=0.2  Score=38.65  Aligned_cols=79  Identities=19%  Similarity=0.156  Sum_probs=48.9

Q ss_pred             CeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEE
Q psy11529        123 RLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVE  202 (244)
Q Consensus       123 ~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (244)
                      |.+.-+|+.+++..|.....     .++..-..+..+.++++|+.||.++-+|.                  .+++.+-+
T Consensus       466 G~l~AiD~~TG~i~W~~~~~-----~p~~~g~lstagglVF~Gt~dg~l~A~Da------------------~TGe~LW~  522 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKEH-----LPLWAGVLATAGNLVFTGTGDGYFKAFDA------------------KSGKELWK  522 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEES-----SCCCSCCEEETTTEEEEECTTSEEEEEET------------------TTCCEEEE
T ss_pred             CeEEEEcCCCCcEEeecCCC-----CCCccceeEEcCCeEEEeCCCCeEEEEEC------------------CCCcEeEE
Confidence            44666666666654433221     11222123345778888999999999999                  78999988


Q ss_pred             ecCCCCCCCCeEEEEEecCCC-EEE
Q psy11529        203 LNNSSSGGGWIHSVAFSKDGN-KLC  226 (244)
Q Consensus       203 ~~~~~~~~~~v~~~~~s~~~~-~l~  226 (244)
                      ++...  ...-.-+.|..+|+ |++
T Consensus       523 ~~~~~--~~~~~P~ty~~~G~qYv~  545 (582)
T d1flga_         523 FQTGS--GIVSPPITWEQDGEQYLG  545 (582)
T ss_dssp             EECSS--CCCSCCEEEEETTEEEEE
T ss_pred             EECCC--CccccCEEEEECCEEEEE
Confidence            87642  11122367778997 544

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.89  E-value=0.19  Score=36.44  Aligned_cols=145  Identities=4%  Similarity=-0.024  Sum_probs=85.7

Q ss_pred             CCceEEEEEcCCCCeEEEecCCCeEEEeeecc---------CCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccE
Q psy11529          9 INPVTTHAWNNTRQQLAFTPNNQEVHLYQYEK---------AANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNA   79 (244)
Q Consensus         9 ~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~---------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i   79 (244)
                      .....-++.++...++++|+.+ .+.|..+..         ....++....    -..|..++|+.+  .++.. .++.+
T Consensus        36 ~~~~~LLAVsn~~GLl~aa~~~-~l~V~~t~~l~~~~~~~~~~~~~~~~~~----ip~v~~vafs~d--~l~v~-~~~~l  107 (381)
T d1xipa_          36 FASLQNLDISNSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEKE----IPDVIFVCFHGD--QVLVS-TRNAL  107 (381)
T ss_dssp             SSCCBCEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEEE----CTTEEEEEEETT--EEEEE-ESSEE
T ss_pred             ccccceEEEeCCCCEEEEECCC-EEEEEEHHHHHHHhhccCCCCcceeccC----CCCeEEEEeeCC--EEEEE-eCCCE
Confidence            3456678888877788887766 467776432         0011111111    235888999744  45544 45567


Q ss_pred             EEEeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEe-eecCCCCceeEEEecCC
Q psy11529         80 YVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKH-IKKPIKSTITCLDWHPN  158 (244)
Q Consensus        80 ~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~~~~~v~~~~~~p~  158 (244)
                      ..++  ...-.  ...........+..+.++|.  .++....++.+.++++...+....... ....-.+.+.+++|++.
T Consensus       108 ~~~~--~~~l~--~~~~~~~~~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~k  181 (381)
T d1xipa_         108 YSLD--LEELS--EFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLKDR  181 (381)
T ss_dssp             EEEE--SSSTT--CEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEEEEETTS
T ss_pred             EEEE--eeccc--cccccccccccccceecCCc--eeEEEecCCCEEEEEeccCccccccCCcceEEecCCceEEEEeCC
Confidence            7777  33322  12222334566788888875  567777789999988877753111100 00111356888888888


Q ss_pred             CCEEEEeeC
Q psy11529        159 NHLLGCGST  167 (244)
Q Consensus       159 ~~~l~~~~~  167 (244)
                      |+.++++..
T Consensus       182 gkq~v~~~g  190 (381)
T d1xipa_         182 SFQSFAWRN  190 (381)
T ss_dssp             CEEEEEEET
T ss_pred             cEEEEEeCC
Confidence            888877743

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=95.81  E-value=0.12  Score=39.83  Aligned_cols=49  Identities=18%  Similarity=0.255  Sum_probs=34.7

Q ss_pred             CCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCC-EEE
Q psy11529        158 NNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGN-KLC  226 (244)
Q Consensus       158 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~  226 (244)
                      .+.++++|+.||.++.+|.                  .+++.+-+++...  ...-.-+.|..+|+ |++
T Consensus       487 agglVF~G~~dg~l~A~Da------------------~TGe~LW~~~~~~--~~~~~P~ty~~~GkQYv~  536 (573)
T d1kb0a2         487 AGNVVFQGTADGRLVAYHA------------------ATGEKLWEAPTGT--GVVAAPSTYMVDGRQYVS  536 (573)
T ss_dssp             TTTEEEEECTTSEEEEEET------------------TTCCEEEEEECSS--CCCSCCEEEEETTEEEEE
T ss_pred             cCCEEEEECCCCeEEEEEC------------------CCCcEeEEEECCC--CccccCEEEEECCEEEEE
Confidence            5778888999999999999                  7899998877641  11111256667887 443

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=95.17  E-value=0.47  Score=36.40  Aligned_cols=52  Identities=8%  Similarity=0.100  Sum_probs=34.6

Q ss_pred             CCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCC-EEEEee
Q psy11529        112 LENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNH-LLGCGS  166 (244)
Q Consensus       112 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~-~l~~~~  166 (244)
                      .+.++++++.|+.++.+|.++++.+|...........+   +.|.-+|+ |++..+
T Consensus       487 agglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P---~ty~~~GkQYv~v~~  539 (573)
T d1kb0a2         487 AGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAP---STYMVDGRQYVSVAV  539 (573)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCC---EEEEETTEEEEEEEE
T ss_pred             cCCEEEEECCCCeEEEEECCCCcEeEEEECCCCccccC---EEEEECCEEEEEEEe
Confidence            46688889999999999999999866555433222223   44555775 554433

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=95.02  E-value=0.37  Score=34.41  Aligned_cols=151  Identities=11%  Similarity=0.097  Sum_probs=86.8

Q ss_pred             CCCeEEEEeCCccEEEEeeeCCCCCceeeEEEeccCcceEEEEEC------CCCCeEEEeeC-C---CeEEEEEeecCCC
Q psy11529         66 NTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWS------PLENKFAAGSG-A---RLISVCYFESEND  135 (244)
Q Consensus        66 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~------~~~~~l~~~~~-d---~~i~i~d~~~~~~  135 (244)
                      +..+++...+.+-+.+||  +. |+.+...    ..+.++.+..-      ....-+++++. +   .+|.+|.++....
T Consensus        39 ~~SlI~gTdK~~Gl~vYd--L~-G~~l~~~----~~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~  111 (353)
T d1h6la_          39 QNSKLITTNKKSGLAVYS--LE-GKMLHSY----HTGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNG  111 (353)
T ss_dssp             GGCEEEEEETTSCCEEEE--TT-CCEEEEC----CSSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTT
T ss_pred             CccEEEEEcCcCCEEEEc--CC-CcEEEec----ccCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCccc
Confidence            456666666676799999  54 5532222    23444444432      22223555542 2   3688888875443


Q ss_pred             ceEEEeeecC------CCCceeEEEe--cCC-CC-EEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecC
Q psy11529        136 WWVAKHIKKP------IKSTITCLDW--HPN-NH-LLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNN  205 (244)
Q Consensus       136 ~~~~~~~~~~------~~~~v~~~~~--~p~-~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (244)
                        ........      ....+..+|+  +|. |. ++++...+|.+..|.+......           ....+.+..+..
T Consensus       112 --~l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g-----------~v~~~lvr~f~~  178 (353)
T d1h6la_         112 --TLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNG-----------YISGKKVRAFKM  178 (353)
T ss_dssp             --EEEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTS-----------SEEEEEEEEEEC
T ss_pred             --ccccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCC-----------ceeeEeeeccCC
Confidence              11111111      1134667777  664 44 4566667899999987432100           012355666665


Q ss_pred             CCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCC
Q psy11529        206 SSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQ  240 (244)
Q Consensus       206 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~  240 (244)
                          ...+..+++.+....|+.+-++.-|..++++
T Consensus       179 ----~~q~EGCVvDde~~~LyisEE~~Giw~~~a~  209 (353)
T d1h6la_         179 ----NSQTEGMAADDEYGSLYIAEEDEAIWKFSAE  209 (353)
T ss_dssp             ----SSCEEEEEEETTTTEEEEEETTTEEEEEESS
T ss_pred             ----CCccceEEEeCCCCcEEEecCccceEEEEec
Confidence                5678999999988888888777655555543

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=94.23  E-value=0.61  Score=35.67  Aligned_cols=24  Identities=17%  Similarity=0.217  Sum_probs=19.0

Q ss_pred             ecCCCEEEEeeCCCcEEEEeCCCC
Q psy11529        219 SKDGNKLCWTSHDGSINVRMSQQV  242 (244)
Q Consensus       219 s~~~~~l~~~~~dg~i~vwd~~~~  242 (244)
                      +-.+.+++.|+.||.++.+|.++-
T Consensus       466 ~TagglVF~G~~dg~l~A~Da~tG  489 (560)
T d1kv9a2         466 STAGNLVFQGTAAGQMHAYSADKG  489 (560)
T ss_dssp             EETTTEEEEECTTSEEEEEETTTC
T ss_pred             EECCCEEEEECCCCcEEEEECCCC
Confidence            335667888999999999998763

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=93.61  E-value=1.1  Score=34.26  Aligned_cols=57  Identities=7%  Similarity=-0.169  Sum_probs=32.5

Q ss_pred             ccEEEEeeeCCCCCceeeEEEeccCc-------ceEEEEECCCCC---eEEEeeCCCeEEEEEeecCCC
Q psy11529         77 RNAYVWTQNNDDKKWKPTLVLLRINR-------AATCVKWSPLEN---KFAAGSGARLISVCYFESEND  135 (244)
Q Consensus        77 ~~i~iwd~~~~~~~~~~~~~~~~~~~-------~v~~~~~~~~~~---~l~~~~~d~~i~i~d~~~~~~  135 (244)
                      ..+.-.|  .++++.........|..       .........+++   .++..+.+|.+.++|.++++.
T Consensus       272 ~svvAld--~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~~  338 (571)
T d2ad6a1         272 MTIWGRD--LDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNL  338 (571)
T ss_dssp             TEEEEEE--TTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCE
T ss_pred             cceeeee--ccchhheecccccCccccccccccccceeeeeccCccccceeeccccceEEEEecCCCcE
Confidence            3455666  78888665554333221       111122222332   466778899999988887765

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.24  E-value=0.75  Score=31.19  Aligned_cols=21  Identities=19%  Similarity=0.257  Sum_probs=15.5

Q ss_pred             CCCEEEEeeCCC-----cEEEEeCCC
Q psy11529        221 DGNKLCWTSHDG-----SINVRMSQQ  241 (244)
Q Consensus       221 ~~~~l~~~~~dg-----~i~vwd~~~  241 (244)
                      ++++++.|+.++     .+.+||+++
T Consensus       242 ~~~l~v~GG~~~~~~~~~v~~yd~~~  267 (288)
T d1zgka1         242 QGRIYVLGGYDGHTFLDSVECYDPDT  267 (288)
T ss_dssp             TTEEEEECCBCSSCBCCEEEEEETTT
T ss_pred             CCEEEEEecCCCCeecceEEEEECCC
Confidence            788888877654     378898875

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.14  E-value=1  Score=32.45  Aligned_cols=138  Identities=9%  Similarity=0.030  Sum_probs=78.0

Q ss_pred             CceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCCCC
Q psy11529         10 NPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDK   89 (244)
Q Consensus        10 ~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~   89 (244)
                      ..|..++|+.|  .|++.. ++.+..++....    ........-..++.++.++|.  .++....++.+.+++  +.++
T Consensus        87 p~v~~vafs~d--~l~v~~-~~~l~~~~~~~l----~~~~~~~~~~~~~~~~~~~p~--~~~l~~~~~~~~~~~--l~~~  155 (381)
T d1xipa_          87 PDVIFVCFHGD--QVLVST-RNALYSLDLEEL----SEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALD--LRTK  155 (381)
T ss_dssp             TTEEEEEEETT--EEEEEE-SSEEEEEESSST----TCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEE--TTTC
T ss_pred             CCeEEEEeeCC--EEEEEe-CCCEEEEEeecc----ccccccccccccccceecCCc--eeEEEecCCCEEEEE--eccC
Confidence            35888999755  455543 466777776541    222233334567888888875  455566688999999  6666


Q ss_pred             CceeeE---EEeccCcceEEEEECCCCCeEEEeeCCCeEEEE-EeecCCCceEEEeee--cCCCCceeEEEecCCCCEEE
Q psy11529         90 KWKPTL---VLLRINRAATCVKWSPLENKFAAGSGARLISVC-YFESENDWWVAKHIK--KPIKSTITCLDWHPNNHLLG  163 (244)
Q Consensus        90 ~~~~~~---~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~-d~~~~~~~~~~~~~~--~~~~~~v~~~~~~p~~~~l~  163 (244)
                      ......   ....-.+.+.++.|++.|..++++..+. ..+- ++...      ....  ......+.++.|-.+..+++
T Consensus       156 ~~~~~~~~v~~~~~~~~~~~v~ws~kgkq~v~~~g~~-~q~k~~i~~~------~~~~~p~~~~~~v~sI~WL~~~~F~v  228 (381)
T d1xipa_         156 STKQLAQNVTSFDVTNSQLAVLLKDRSFQSFAWRNGE-MEKQFEFSLP------SELEELPVEEYSPLSVTILSPQDFLA  228 (381)
T ss_dssp             CEEEEEESEEEEEECSSEEEEEETTSCEEEEEEETTE-EEEEEEECCC------HHHHTSCTTTSEEEEEEESSSSEEEE
T ss_pred             ccccccCCcceEEecCCceEEEEeCCcEEEEEeCCCc-eeeccCCCCc------cccCCCcCCCcceeEEEEecCceEEE
Confidence            533221   1112346677888888887777764332 2110 11110      0001  11235678899887666665


Q ss_pred             Ee
Q psy11529        164 CG  165 (244)
Q Consensus       164 ~~  165 (244)
                      +-
T Consensus       229 vy  230 (381)
T d1xipa_         229 VF  230 (381)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=86.53  E-value=5.4  Score=30.36  Aligned_cols=81  Identities=11%  Similarity=0.064  Sum_probs=48.7

Q ss_pred             ccEEEEeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEec
Q psy11529         77 RNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWH  156 (244)
Q Consensus        77 ~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~  156 (244)
                      |.+.-+|  +.+++..-....   ..++..-..+..+.++++++.|+.++.+|.++++.+|........+.   .-+.|.
T Consensus       466 G~l~AiD--~~TG~i~W~~~~---~~p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~---~P~ty~  537 (582)
T d1flga_         466 GSLRAMD--PVSGKVVWEHKE---HLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVS---PPITWE  537 (582)
T ss_dssp             EEEEEEC--TTTCCEEEEEEE---SSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCS---CCEEEE
T ss_pred             CeEEEEc--CCCCcEEeecCC---CCCCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccc---cCEEEE
Confidence            4566677  677765544432   12222212233566888899999999999999998666554332222   225666


Q ss_pred             CCCC-EEEEe
Q psy11529        157 PNNH-LLGCG  165 (244)
Q Consensus       157 p~~~-~l~~~  165 (244)
                      .+|+ |+++.
T Consensus       538 ~~G~qYv~i~  547 (582)
T d1flga_         538 QDGEQYLGVT  547 (582)
T ss_dssp             ETTEEEEEEE
T ss_pred             ECCEEEEEEE
Confidence            7885 55543

>d2ebsa1 b.69.13.1 (A:4-430) Oligoxyloglucan reducing end-specific cellobiohydrolase {Yeast (Geotrichum sp. M128) [TaxId: 203496]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Oligoxyloglucan reducing end-specific cellobiohydrolase
family: Oligoxyloglucan reducing end-specific cellobiohydrolase
domain: Oligoxyloglucan reducing end-specific cellobiohydrolase
species: Yeast (Geotrichum sp. M128) [TaxId: 203496]

Probab=82.36  E-value=6.8  Score=28.13  Aligned_cols=145  Identities=14%  Similarity=0.158  Sum_probs=71.0

Q ss_pred             CCceEEEEEcCC-CCeEEEecCCCeEEEeeeccCCCcceeeeee----ccCCCceEEEEeCCCC-CeEEEEeCC----cc
Q psy11529          9 INPVTTHAWNNT-RQQLAFTPNNQEVHLYQYEKAANDWSQLDVL----DGHDLKVTGIDWAPNT-NRIVTCSAD----RN   78 (244)
Q Consensus         9 ~~~v~~~~~~~~-~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~----~~~~~~v~~~~~~~~~-~~l~~~~~d----~~   78 (244)
                      .+.|.+|+++|. .+.+.+++..|-|  |...+.+..++.+...    ......+.+|+++|.. ..+..+..+    ..
T Consensus        11 gg~~~~i~~~P~~~~~~ya~~~~gGv--~~S~dgG~tW~~~~~~~~~~~~~~~~~~~iavdp~np~~vy~~tg~~~~~~~   88 (427)
T d2ebsa1          11 GGYITGIVAHPKTKDLLYARTDIGGA--YRWDAGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEW   88 (427)
T ss_dssp             CSCEEEEEECSSSTTCEEEEESSSCE--EEEETTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSC
T ss_pred             CCcEEEEEECCCCCCEEEEEecCCCE--EEEECCCCceEECCCCCCCCCcccccEeEEEECCCCCCEEEEEeccccCCcC
Confidence            578999999995 4456566655544  4333322444443221    1123468899999943 455444321    12


Q ss_pred             EEEEeeeCCCCCceeeEEEec--------cCcceEEEEECCC-CCeEEEeeCCCeEEEEEeecCCCceEEEeee---cCC
Q psy11529         79 AYVWTQNNDDKKWKPTLVLLR--------INRAATCVKWSPL-ENKFAAGSGARLISVCYFESENDWWVAKHIK---KPI  146 (244)
Q Consensus        79 i~iwd~~~~~~~~~~~~~~~~--------~~~~v~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---~~~  146 (244)
                      ..||.  ..++-..-......        .......+.++|. ...+++++.++.|  |.-......+......   ...
T Consensus        89 ~gi~~--S~DgG~TW~~~~~~~~~~~~~~~~~~~~~i~v~P~~~~~v~~~~~~~gl--~~S~D~G~tW~~~~~~~~~~~~  164 (427)
T d2ebsa1          89 AAFYV--SEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGI--WKSSDRAKTWTNVTSIPDAFTN  164 (427)
T ss_dssp             CEEEE--ESSTTSEEEEEECSSCCCTTSTTTTSCCCEEECTTCTTCEEEECSSSCE--EEESSTTSSCEECTTSSCCCCS
T ss_pred             ccEEE--eCCCCccceeecCCcccCccccCccceeEEEECCCccCcccccccccce--eeecCCCceeeecccCcccccC
Confidence            34554  23222111111111        1123556889986 4556666655444  3233332222221111   112


Q ss_pred             CCceeEEEecCCC
Q psy11529        147 KSTITCLDWHPNN  159 (244)
Q Consensus       147 ~~~v~~~~~~p~~  159 (244)
                      ...+..+.++|..
T Consensus       165 ~~~~~~i~~~p~~  177 (427)
T d2ebsa1         165 GIGYTSVIFDPER  177 (427)
T ss_dssp             SSCEEEEEECTTS
T ss_pred             CccceEEEecccc
Confidence            2347789998854

>d1tl2a_ b.67.1.1 (A:) Tachylectin-2 {Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]}

class: All beta proteins
fold: 5-bladed beta-propeller
superfamily: Tachylectin-2
family: Tachylectin-2
domain: Tachylectin-2
species: Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]

Probab=81.39  E-value=4.9  Score=25.77  Aligned_cols=147  Identities=11%  Similarity=0.069  Sum_probs=77.3

Q ss_pred             CceEEEEEcCCCCeEEEecCCCeEEEeeeccCC-CcceeeeeeccC--CCceEEEEeCCCCCeEEEEeCCccEEEEeeeC
Q psy11529         10 NPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAA-NDWSQLDVLDGH--DLKVTGIDWAPNTNRIVTCSADRNAYVWTQNN   86 (244)
Q Consensus        10 ~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~-~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~   86 (244)
                      ..+.-++|||+|++.++-.  +.++.=.+...+ ..+-...+..+.  =..-..+-|+|+|-+.++.  ++  .+|.-..
T Consensus        40 ~n~~~i~fsP~G~LyaVr~--~~lY~Gp~~s~~nq~wf~~atrIG~ggWn~FkflffdP~G~LyaVt--~~--~LYr~~p  113 (235)
T d1tl2a_          40 SNFKFLFLSPGGELYGVLN--DKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAVS--KD--KLYKASP  113 (235)
T ss_dssp             TTCSEEEECTTSCEEEEET--TEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEEE--TT--EEEEESC
T ss_pred             cceeEEEECCCCcEEEEEC--CeEEECCCCCcchHHHHHhhhhcccCcccceEEEEECCCceEEEec--Cc--ceecCCc
Confidence            4456699999999888763  355544333211 111111111111  1234567889988665555  34  5665212


Q ss_pred             CCCC---ceeeEEE--eccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCC-ce--EEEeeecCCCCceeEEEecCC
Q psy11529         87 DDKK---WKPTLVL--LRINRAATCVKWSPLENKFAAGSGARLISVCYFESEND-WW--VAKHIKKPIKSTITCLDWHPN  158 (244)
Q Consensus        87 ~~~~---~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~-~~--~~~~~~~~~~~~v~~~~~~p~  158 (244)
                      .+.+   ++.....  ...-+.+..+-|.|+|.+.++ ..++ +.-+.-..+.. .+  ........+-.....+.|+|+
T Consensus       114 Ptn~~q~W~g~a~~vG~~gw~df~~lFFdP~G~LYaV-~~~~-l~k~~pP~~~~d~WL~~st~igr~~w~~~~fi~Fs~d  191 (235)
T d1tl2a_         114 PQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAV-HGQQ-FYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSV  191 (235)
T ss_dssp             CCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEE-ETTE-EEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTT
T ss_pred             CcccchhhhhhhhhhccCCcCceeEEEECCCceEEEE-ECCc-EEEcCCCCCCCchhhhhhhhhccCcccCceEEEECCC
Confidence            2221   1111111  223346778999999987777 4443 44444322221 01  111233344456778999999


Q ss_pred             CCEEEE
Q psy11529        159 NHLLGC  164 (244)
Q Consensus       159 ~~~l~~  164 (244)
                      |++..+
T Consensus       192 G~L~~v  197 (235)
T d1tl2a_         192 GTLFGV  197 (235)
T ss_dssp             SCEEEE
T ss_pred             CcEEEE
Confidence            987766

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=80.82  E-value=10  Score=28.99  Aligned_cols=71  Identities=14%  Similarity=0.165  Sum_probs=43.5

Q ss_pred             CCeEEEEeCCccEEEEeeeCCCCCceeeEEEeccCcceEEEEECCC--CCeEEEeeC------CCeEEEEEeecCCCceE
Q psy11529         67 TNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPL--ENKFAAGSG------ARLISVCYFESENDWWV  138 (244)
Q Consensus        67 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~------d~~i~i~d~~~~~~~~~  138 (244)
                      +.+++.++.|+.+.-.|  .++++............. ..+.-.|-  +..++++..      .|.|+-+|.++++..|.
T Consensus       121 ~~~v~~~t~dg~l~Ald--a~tG~~~w~~~~~d~~~~-~~~t~~P~v~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~  197 (596)
T d1w6sa_         121 PALILKTQLDGNVAALN--AETGETVWKVENSDIKVG-STLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWR  197 (596)
T ss_dssp             CCEEEEECTTSEEEEEE--TTTCCEEEEEECCCGGGT-CBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEE
T ss_pred             ceEEEEEeCCCCeEeec--cccCceeccccccccccc-cccccCCcEECCeEEEeeccccccccCceEEEECCCCcEEEE
Confidence            34688888899999889  889986555432111110 11111221  345555543      48899999999988665


Q ss_pred             EE
Q psy11529        139 AK  140 (244)
Q Consensus       139 ~~  140 (244)
                      ..
T Consensus       198 ~~  199 (596)
T d1w6sa_         198 AY  199 (596)
T ss_dssp             EE
T ss_pred             ee
Confidence            44

>d2ebsa1 b.69.13.1 (A:4-430) Oligoxyloglucan reducing end-specific cellobiohydrolase {Yeast (Geotrichum sp. M128) [TaxId: 203496]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Oligoxyloglucan reducing end-specific cellobiohydrolase
family: Oligoxyloglucan reducing end-specific cellobiohydrolase
domain: Oligoxyloglucan reducing end-specific cellobiohydrolase
species: Yeast (Geotrichum sp. M128) [TaxId: 203496]

Probab=80.37  E-value=8.1  Score=27.71  Aligned_cols=116  Identities=16%  Similarity=0.170  Sum_probs=60.3

Q ss_pred             CCCceEEEEeCC-CCCeEEEEeCCccEEEEeeeCCCCCceeeEEE----eccCcceEEEEECCCC-CeEEEeeCC----C
Q psy11529         54 HDLKVTGIDWAP-NTNRIVTCSADRNAYVWTQNNDDKKWKPTLVL----LRINRAATCVKWSPLE-NKFAAGSGA----R  123 (244)
Q Consensus        54 ~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~----~~~~~~v~~~~~~~~~-~~l~~~~~d----~  123 (244)
                      -.+.|.+|+++| +..++++++..+-|..-+  -....+......    ......+.+|+++|.. +.++.+..+    .
T Consensus        10 ~gg~~~~i~~~P~~~~~~ya~~~~gGv~~S~--dgG~tW~~~~~~~~~~~~~~~~~~~iavdp~np~~vy~~tg~~~~~~   87 (427)
T d2ebsa1          10 GGGYITGIVAHPKTKDLLYARTDIGGAYRWD--AGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDE   87 (427)
T ss_dssp             BCSCEEEEEECSSSTTCEEEEESSSCEEEEE--TTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSS
T ss_pred             CCCcEEEEEECCCCCCEEEEEecCCCEEEEE--CCCCceEECCCCCCCCCcccccEeEEEECCCCCCEEEEEeccccCCc
Confidence            467899999999 566777777666554332  122222211100    1123357889999863 445544322    1


Q ss_pred             eEEEEEeecCCCceEEEeeecC------CCCceeEEEecCCC-CEEEEeeCCCeE
Q psy11529        124 LISVCYFESENDWWVAKHIKKP------IKSTITCLDWHPNN-HLLGCGSTDFKV  171 (244)
Q Consensus       124 ~i~i~d~~~~~~~~~~~~~~~~------~~~~v~~~~~~p~~-~~l~~~~~dg~i  171 (244)
                      ...||.-..+...|........      .......+.++|.. ..+..++.++.|
T Consensus        88 ~~gi~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~i~v~P~~~~~v~~~~~~~gl  142 (427)
T d2ebsa1          88 WAAFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGI  142 (427)
T ss_dssp             CCEEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEECTTCTTCEEEECSSSCE
T ss_pred             CccEEEeCCCCccceeecCCcccCccccCccceeEEEECCCccCcccccccccce
Confidence            2345544444443333222111      12345678899854 566666655543

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.27  E-value=6.2  Score=26.28  Aligned_cols=56  Identities=11%  Similarity=0.143  Sum_probs=30.5

Q ss_pred             CeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeC---------CccEEEEeeeCCCCCce
Q psy11529         31 QEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSA---------DRNAYVWTQNNDDKKWK   92 (244)
Q Consensus        31 ~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---------d~~i~iwd~~~~~~~~~   92 (244)
                      ..+.+||..+  +.|..+..+......-..+..  +++.++.|+.         -..+.+||  ..+.++.
T Consensus        19 ~~~~~yd~~t--~~W~~~~~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd--~~~~~w~   83 (288)
T d1zgka1          19 SYLEAYNPSN--GTWLRLADLQVPRSGLAGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYN--PMTNQWS   83 (288)
T ss_dssp             CCEEEEETTT--TEEEECCCCSSCCBSCEEEEE--TTEEEEECCEEEETTEEEECCCEEEEE--TTTTEEE
T ss_pred             ceEEEEECCC--CeEEECCCCCCccceeEEEEE--CCEEEEEeCcccCCCCccccchhhhcc--ccccccc
Confidence            3688999988  666666555432222222222  4555565542         13566777  6665543