Psyllid ID: psy11547
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 587 | 2.2.26 [Sep-21-2011] | |||||||
| B0WC46 | 517 | Facilitated trehalose tra | N/A | N/A | 0.749 | 0.851 | 0.297 | 3e-65 | |
| B4HNS1 | 488 | Facilitated trehalose tra | N/A | N/A | 0.773 | 0.930 | 0.300 | 2e-63 | |
| A9ZSY3 | 505 | Facilitated trehalose tra | N/A | N/A | 0.770 | 0.895 | 0.308 | 2e-63 | |
| Q8MKK4 | 488 | Facilitated trehalose tra | no | N/A | 0.792 | 0.952 | 0.297 | 7e-63 | |
| B4QBN3 | 488 | Facilitated trehalose tra | N/A | N/A | 0.773 | 0.930 | 0.298 | 4e-62 | |
| B4HNS0 | 857 | Facilitated trehalose tra | N/A | N/A | 0.770 | 0.527 | 0.296 | 5e-62 | |
| B4QBN2 | 857 | Facilitated trehalose tra | N/A | N/A | 0.770 | 0.527 | 0.298 | 2e-61 | |
| A5LGM7 | 504 | Facilitated trehalose tra | N/A | N/A | 0.747 | 0.871 | 0.299 | 7e-60 | |
| Q17NV8 | 806 | Facilitated trehalose tra | N/A | N/A | 0.749 | 0.545 | 0.299 | 1e-59 | |
| A9ZSY2 | 502 | Facilitated trehalose tra | N/A | N/A | 0.778 | 0.910 | 0.295 | 2e-59 |
| >sp|B0WC46|TRET1_CULQU Facilitated trehalose transporter Tret1 OS=Culex quinquefasciatus GN=Tret1 PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 249 bits (637), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 136/457 (29%), Positives = 248/457 (54%), Gaps = 17/457 (3%)
Query: 104 MVFGFSAAATS-QLIS-RD---SPYRITSDESTWIASLSAIGTMVGCVLGGYMMDLVGRK 158
MV GFS+A TS L+S +D + + +T +W+ + + +VG +LGG +++ +GRK
Sbjct: 68 MVVGFSSAYTSPALVSMKDRNITSFEVTDQSGSWVGGIMPLAGLVGGILGGPLIEYLGRK 127
Query: 159 MTLIITEVPTILGWALIALAPSLPSSILPWIFTGRILTGLGSGMVGAPSRIYTAECSQPH 218
T++ T P I+ W LIA A + + GR L+G G+ +Y E QP
Sbjct: 128 NTILATATPFIISWLLIACATHVAM-----VLVGRALSGFSVGVASLSLPVYLGETVQPE 182
Query: 219 LRGMLSSLASFGVSLGVLFEYSLGAFLSWDTVAAISTIIPVLSIIAGCLMPESPSWLLSQ 278
+RG L L + ++G+L + G ++ W +A + +PV +I L+PE+P W +S+
Sbjct: 183 VRGTLGLLPTAFGNIGILLCFVAGNYMDWSELAFLGATLPVPFLILMFLIPETPRWYVSR 242
Query: 279 GRKDACRNSLRRLRANNYDVEKEVQGLYEFSKRQETQKSRNFKETLAAIVEPACLKPFVI 338
GR D R +L+ LR DV+ E++G+ + + E S++ + +++ LKP +I
Sbjct: 243 GRDDRARKALQWLRGKKADVDPELKGIIKSHQDAERHASQS---AMLDLLKKTNLKPLLI 299
Query: 339 LMLYFLIYQFSGVNPVTFYAVNIFKDAGAHVNNNLAAVIMGIVRLIFTIASCIMMKKMGR 398
+ Q SG+N V FY V IF+DAG+ ++ NL +I+G+V I T + +++ ++GR
Sbjct: 300 SLGLMFFQQLSGINAVIFYTVQIFQDAGSTIDENLCTIIVGVVNFIATFIATLLIDRLGR 359
Query: 399 RSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVV 458
+ L +IS I +++ LG + + + + + +LP+ + F ++G+ +
Sbjct: 360 KMLLYISDIAMIITLMTLGGFFYVKNNGGDV----SHIGWLPLASFVIFVLGFSLGFGPI 415
Query: 459 PWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLTKEGTFLMYGCISLLGT 518
PW+M+GE+ P K+RG + T F+ K++ + G F M+G + ++G
Sbjct: 416 PWLMMGEILPGKIRGSAASVATAFNWSCTFVVTKTFADIIASIGTHGAFWMFGSVCVVGL 475
Query: 519 IFFYVYLPETKNKTLQEIEEQFAGKSKKHHSEIYVKP 555
+F +Y+PET+ K+L++IE + G+ ++ S +KP
Sbjct: 476 VFVIMYVPETQGKSLEDIERKMCGRVRRMSSVANIKP 512
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High-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph. Culex quinquefasciatus (taxid: 7176) |
| >sp|B4HNS1|TRE12_DROSE Facilitated trehalose transporter Tret1-2 homolog OS=Drosophila sechellia GN=Tret1-2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 244 bits (622), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 142/472 (30%), Positives = 253/472 (53%), Gaps = 18/472 (3%)
Query: 77 ATKAGGQKVSLSLTLAVFANLGNVNTGMVFGFSAAATS-QLISRD----SPYRITSDEST 131
+ A G K + + + V A L +V GF +A TS L+S + + +T D +
Sbjct: 14 SVPAEGTKANFTFS-QVLAALSVSLCSLVVGFVSAYTSPALVSMTDRTITSFEVTKDAGS 72
Query: 132 WIASLSAIGTMVGCVLGGYMMDLVGRKMTLIITEVPTILGWALIALAPSLPSSILPWIFT 191
W+ + + + G + GG +++ +GR+ T++ T VP I+ LIA A ++ I
Sbjct: 73 WVGGIMPLAALAGGITGGPLIEYLGRRNTILATAVPFIVSSLLIACAVNVIM-----ILC 127
Query: 192 GRILTGLGSGMVGAPSRIYTAECSQPHLRGMLSSLASFGVSLGVLFEYSLGAFLSWDTVA 251
GR LTG G+ +Y E QP +RG L L + ++G+L Y G+F++W +A
Sbjct: 128 GRFLTGFCVGIASLSLPVYLGETLQPEVRGTLGLLPTALGNIGILVCYVAGSFMNWSILA 187
Query: 252 AISTIIPVLSIIAGCLMPESPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQGLYEFSKR 311
+ +PV +I ++PE+P W +++G+++ R +L+ LR DVE E++ L +
Sbjct: 188 FLGAALPVPFLILMIIIPETPRWFVNRGQEERARKALKWLRGKEADVEPELKDLMQSQAE 247
Query: 312 QETQKSRNFKETLAAIVEPACLKPFVILMLYFLIYQFSGVNPVTFYAVNIFKDAGAHVNN 371
++Q +RN T + + LKP I + QFSG+N V FY V IFKDAG+ +++
Sbjct: 248 ADSQATRN---TCLELFKRINLKPLSISLGLMFFQQFSGINAVIFYTVQIFKDAGSTIDS 304
Query: 372 NLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYK 431
NL +I+GIV T I++ ++GR+ L ++S I ++++ LG + F K P+
Sbjct: 305 NLCTIIVGIVNFFATFMGIILIDRLGRKILLYVSDIAMILTLSILGGF-FYCKAHGPDV- 362
Query: 432 FPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTV 491
+ + +LP+ + + ++G+ +PW+M+GE+ P K+RG + T F F+
Sbjct: 363 --SHLGWLPLSCFVIYILGFSLGFGPIPWLMMGEILPAKIRGPAASVVTAFNWFCTFVVT 420
Query: 492 KSYNMFQTHLTKEGTFLMYGCISLLGTIFFYVYLPETKNKTLQEIEEQFAGK 543
K++ + G F ++G + ++G F +Y+PET+ K+L+EIE + G+
Sbjct: 421 KTFQDLTVAMGPHGAFWLFGVVCIVGLFFVIIYVPETRGKSLEEIERKMMGR 472
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Fails to transport trehalose. Drosophila sechellia (taxid: 7238) |
| >sp|A9ZSY3|TRET1_BOMMO Facilitated trehalose transporter Tret1 OS=Bombyx mori GN=Tret1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 243 bits (621), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 145/470 (30%), Positives = 255/470 (54%), Gaps = 18/470 (3%)
Query: 79 KAGGQKVSL-SLTLAVFA-NLGNVNTGMVFGFSAAATSQLISRDSPYRITSDESTWIASL 136
K+ QK+ L + LA FA ++G++N G G+++ A +++ + IT +E TW+ L
Sbjct: 40 KSTTQKLFLWTQLLAAFAVSVGSMNVGFSSGYTSPA---VLTMNITLDITKEEITWVGGL 96
Query: 137 SAIGTMVGCVLGGYMMDLVGRKMTLIITEVPTILGWALIALAPSLPSSILPWIFTGRILT 196
+ +VG ++GG +++ +GRK T++ T VP +GW LIA A ++ +F GR++
Sbjct: 97 MPLAALVGGIVGGPLIEYLGRKKTIMGTAVPFTIGWMLIANAINVVM-----VFAGRVIC 151
Query: 197 GLGSGMVGAPSRIYTAECSQPHLRGMLSSLASFGVSLGVLFEYSLGAFLSWDTVAAISTI 256
G+ G+V +Y E QP +RG L L + + G+L + +G++L W +A
Sbjct: 152 GVCVGIVSLAFPVYIGETIQPEVRGALGLLPTAFGNTGILLAFLVGSYLDWSNLAFFGAA 211
Query: 257 IPVLSIIAGCLMPESPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQGLYEFSKRQETQK 316
IPV + L PE+P W +S+ R R SLR LR N ++EKE++ L +
Sbjct: 212 IPVPFFLLMILTPETPRWYVSKARVQEARKSLRWLRGKNVNIEKEMRDLTISQTESDRTG 271
Query: 317 SRNFKETLAAIVEPACLKPFVILMLYFLIYQFSGVNPVTFYAVNIFKDAGAHVNNNLAAV 376
FK+ + PA + I + L Q +G+N V FYA +IF+ +G+ V+ NLA++
Sbjct: 272 GNAFKQLFSKRYLPAVM----ISLGLMLFQQLTGINAVIFYAASIFQMSGSSVDENLASI 327
Query: 377 IMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFV 436
I+G+V I T + +++ ++GR+ L +ISS+ ++ LG Y + ++ A+
Sbjct: 328 IIGVVNFISTFIATMLIDRLGRKVLLYISSVAMITTLLALGAYFYLKQN---HIDVTAY- 383
Query: 437 SYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNM 496
+LP+ L+ + +IG+ +PW+M+GE+ P+K+RG L T F+ K++
Sbjct: 384 GWLPLACLVIYVLGFSIGFGPIPWLMLGEILPSKIRGTAASLATGFNWTCTFIVTKTFQN 443
Query: 497 FQTHLTKEGTFLMYGCISLLGTIFFYVYLPETKNKTLQEIEEQFAGKSKK 546
+ GT ++ I + G +F ++PETK K+L+EIE + S++
Sbjct: 444 IIDAIYMHGTLWLFAVICIGGLLFVIFFVPETKGKSLEEIEMKLTSGSRR 493
|
High-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph. Bombyx mori (taxid: 7091) |
| >sp|Q8MKK4|TRE12_DROME Facilitated trehalose transporter Tret1-2 homolog OS=Drosophila melanogaster GN=Tret1-2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 242 bits (617), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 144/484 (29%), Positives = 258/484 (53%), Gaps = 19/484 (3%)
Query: 77 ATKAGGQKVSLSLTLAVFANLGNVNTGMVFGFSAAATS-QLISRD----SPYRITSDEST 131
+ A G K + + + V A L +V GF +A TS L+S + + +T D +
Sbjct: 14 SVPADGLKANFTFS-QVLAALSVSLCSLVVGFVSAYTSPALVSMTDRTITSFEVTKDAGS 72
Query: 132 WIASLSAIGTMVGCVLGGYMMDLVGRKMTLIITEVPTILGWALIALAPSLPSSILPWIFT 191
W+ + + + G + GG +++ +GR+ T++ T VP I+ LIA A ++ I
Sbjct: 73 WVGGIMPLAALAGGITGGPLIEYLGRRSTILATAVPFIVSSLLIACAVNVIM-----ILC 127
Query: 192 GRILTGLGSGMVGAPSRIYTAECSQPHLRGMLSSLASFGVSLGVLFEYSLGAFLSWDTVA 251
GR LTG G+ +Y E QP +RG L L + ++G+L Y G+F++W +A
Sbjct: 128 GRFLTGFCVGIASLSLPVYLGETLQPEVRGTLGLLPTALGNIGILVCYVAGSFMNWSMLA 187
Query: 252 AISTIIPVLSIIAGCLMPESPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQGLYEFSKR 311
+ +PV +I ++PE+P W +++G+++ R +L+ LR DVE E++ L +
Sbjct: 188 FLGAALPVPFLILMIIIPETPRWFVNRGQEERARKALKWLRGKEADVEPELKELMQSQAD 247
Query: 312 QETQKSRNFKETLAAIVEPACLKPFVILMLYFLIYQFSGVNPVTFYAVNIFKDAGAHVNN 371
+ Q ++N T + + LKP I + QFSG+N V FY V IFKDAG+ +++
Sbjct: 248 ADRQATQN---TCLELFKRNNLKPLSISLGLMFFQQFSGINAVIFYTVQIFKDAGSTIDS 304
Query: 372 NLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYK 431
NL+ +I+G+V T I++ ++GR+ L ++S I V+++ LG + F K P+
Sbjct: 305 NLSTIIVGVVNFFATFMGIILIDRLGRKILLYVSDIAMIVTLSILGGF-FYCKAHGPDV- 362
Query: 432 FPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTV 491
+ + +LP+ + + ++G+ +PW+M+GE+ P K+RG + T F F+
Sbjct: 363 --SHLGWLPLTCFVIYILGFSLGFGPIPWLMMGEILPAKIRGPAASVVTAFNWFCTFVVT 420
Query: 492 KSYNMFQTHLTKEGTFLMYGCISLLGTIFFYVYLPETKNKTLQEIEEQFAGKSKKHHSEI 551
K++ + G F ++G I ++G F +++PET+ K+L+EIE + G+ S +
Sbjct: 421 KTFQDLTVAMGAHGAFWLFGAICIVGLFFVIIFVPETRGKSLEEIERKMMGRV-PMSSVV 479
Query: 552 YVKP 555
+KP
Sbjct: 480 NIKP 483
|
Fails to transport trehalose. Drosophila melanogaster (taxid: 7227) |
| >sp|B4QBN3|TRE12_DROSI Facilitated trehalose transporter Tret1-2 homolog OS=Drosophila simulans GN=Tret1-2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 239 bits (611), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 141/472 (29%), Positives = 251/472 (53%), Gaps = 18/472 (3%)
Query: 77 ATKAGGQKVSLSLTLAVFANLGNVNTGMVFGFSAAATS-QLISRD----SPYRITSDEST 131
+ A G K + + + V A L +V GF +A TS L+S + + +T D +
Sbjct: 14 SVPAEGPKANFTFS-QVLAALSVSLCSLVVGFVSAYTSPALVSMTDRTITSFEVTKDAGS 72
Query: 132 WIASLSAIGTMVGCVLGGYMMDLVGRKMTLIITEVPTILGWALIALAPSLPSSILPWIFT 191
W+ + + + G + GG +++ +GR+ T++ T VP I+ LIA A ++ I
Sbjct: 73 WVGGIMPLAALAGGITGGPLIEYLGRRTTILATAVPFIVSSLLIACAVNVIM-----ILC 127
Query: 192 GRILTGLGSGMVGAPSRIYTAECSQPHLRGMLSSLASFGVSLGVLFEYSLGAFLSWDTVA 251
GR LTG G+ +Y E QP +RG L L + ++G+L Y G+F++W +A
Sbjct: 128 GRFLTGFCVGIASLSLPVYLGETLQPEVRGTLGLLPTALGNIGILVCYVAGSFMNWSMLA 187
Query: 252 AISTIIPVLSIIAGCLMPESPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQGLYEFSKR 311
+ +PV +I ++PE+P W +++G+++ R +L+ LR DVE E++ L +
Sbjct: 188 FLGAALPVPFLILMIIIPETPRWFVNRGQEERARKALKWLRGKEADVEPELKDLMQSQAE 247
Query: 312 QETQKSRNFKETLAAIVEPACLKPFVILMLYFLIYQFSGVNPVTFYAVNIFKDAGAHVNN 371
++Q RN T + + LKP I + QFSG+N V FY V IFKDAG+ +++
Sbjct: 248 ADSQARRN---TCLELFKRINLKPLSISLGLMFFQQFSGINAVIFYTVQIFKDAGSTIDS 304
Query: 372 NLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYK 431
NL +I+GIV T +++ ++GR+ L +IS I ++++ LG + F K P+
Sbjct: 305 NLCTIIVGIVNFFATFMGILLIDRLGRKILLYISDIAMILTLSILGGF-FYCKAHGPDV- 362
Query: 432 FPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTV 491
+ + +LP+ + + ++G+ +PW+M+GE+ P K+RG + T F F+
Sbjct: 363 --SHLGWLPLTCFVIYILGFSLGFGPIPWLMMGEILPAKIRGPAASVVTAFNWFCTFVVT 420
Query: 492 KSYNMFQTHLTKEGTFLMYGCISLLGTIFFYVYLPETKNKTLQEIEEQFAGK 543
K++ + G F ++G + ++G F + +PET+ K+L+EIE + G+
Sbjct: 421 KTFQDLTVAMGAHGAFWLFGVVCIVGLFFVIICVPETRGKSLEEIERKMMGR 472
|
Fails to transport trehalose. Drosophila simulans (taxid: 7240) |
| >sp|B4HNS0|TRE11_DROSE Facilitated trehalose transporter Tret1-1 OS=Drosophila sechellia GN=Tret1-1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 239 bits (609), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 138/465 (29%), Positives = 249/465 (53%), Gaps = 13/465 (2%)
Query: 92 AVFANLGNVNTGMVFGFSAAATSQLISRD-SPYRITSDESTWIASLSAIGTMVGCVLGGY 150
A+ +LG++ G V +++ A + R+ + + +T D +W+ + + + G + GG
Sbjct: 400 ALSVSLGSLVVGFVSAYTSPALVSMTDRNITSFEVTQDAGSWVGGIMPLAALAGGITGGP 459
Query: 151 MMDLVGRKMTLIITEVPTILGWALIALAPSLPSSILPWIFTGRILTGLGSGMVGAPSRIY 210
+++ +GR+ T++ T VP I+ LIA A ++ + GR L G G+ +Y
Sbjct: 460 LIEYLGRRNTILATAVPFIVSSLLIACAVNVA-----MVLCGRFLAGFCVGIASLSLPVY 514
Query: 211 TAECSQPHLRGMLSSLASFGVSLGVLFEYSLGAFLSWDTVAAISTIIPVLSIIAGCLMPE 270
E QP +RG L L + ++G+L + G+F++W +A + +PV +I L+PE
Sbjct: 515 LGETVQPEVRGTLGLLPTAFGNIGILLCFVAGSFMNWSMLAFLGAALPVPFLILMFLIPE 574
Query: 271 SPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQGLYEFSKRQETQKSRNFKETLAAIVEP 330
+P W + +G ++ R +L+ LR DVE E++GL + Q SRN T+ +++
Sbjct: 575 TPRWFVGRGLEERARKALKWLRGKEADVEPELKGLMRSQADADRQASRN---TMLELLKL 631
Query: 331 ACLKPFVILMLYFLIYQFSGVNPVTFYAVNIFKDAGAHVNNNLAAVIMGIVRLIFTIASC 390
LKP I + QFSG+N V FY V IFKDAG+ ++ NL +I+GIV + T
Sbjct: 632 NNLKPLSISLGLMFFQQFSGINAVIFYTVQIFKDAGSTIDGNLCTIIVGIVNFLATFIGI 691
Query: 391 IMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAA 450
+++ + GR+ L ++S I +++ LG + F K P+ + + +LP+ + +
Sbjct: 692 VLIDRAGRKILLYVSDIAMVLTLFVLGGF-FYCKANGPDV---SHLGWLPLTCFVIYILG 747
Query: 451 STIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLTKEGTFLMY 510
++G+ +PW+M+GE+ P K+RG + T F F+ K++ + G F ++
Sbjct: 748 FSLGFGPIPWLMMGEILPAKIRGSAASVATAFNWFCTFVVTKTFQDLTVAMGAHGAFWLF 807
Query: 511 GCISLLGTIFFYVYLPETKNKTLQEIEEQFAGKSKKHHSEIYVKP 555
G I +G F +Y+PET+ KTL++IE + G+ ++ S +KP
Sbjct: 808 GAICFVGLFFVIIYVPETQGKTLEDIERKMMGRVRRMSSVANIKP 852
|
Low-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph. Drosophila sechellia (taxid: 7238) |
| >sp|B4QBN2|TRE11_DROSI Facilitated trehalose transporter Tret1-1 OS=Drosophila simulans GN=Tret1-1 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 237 bits (605), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 139/465 (29%), Positives = 250/465 (53%), Gaps = 13/465 (2%)
Query: 92 AVFANLGNVNTGMVFGFSAAATSQLISRD-SPYRITSDESTWIASLSAIGTMVGCVLGGY 150
A+ +LG++ G V +++ A + R+ + + +T D +W+ + + + G + GG
Sbjct: 400 ALSVSLGSLVVGFVSAYTSPALVSMTDRNITSFEVTQDAGSWVGGIMPLAGLAGGIAGGP 459
Query: 151 MMDLVGRKMTLIITEVPTILGWALIALAPSLPSSILPWIFTGRILTGLGSGMVGAPSRIY 210
+++ +GR+ T++ T VP I+ LIA A ++ + GR L G G+ +Y
Sbjct: 460 LIEYLGRRNTILATAVPFIVSSLLIACAVNVA-----MVLCGRFLAGFCVGIASLSLPVY 514
Query: 211 TAECSQPHLRGMLSSLASFGVSLGVLFEYSLGAFLSWDTVAAISTIIPVLSIIAGCLMPE 270
E QP +RG L L + ++G+L + G+F++W +A + +PV +I L+PE
Sbjct: 515 LGETVQPEVRGTLGLLPTAFGNIGILLCFVAGSFMNWSMLAFLGAALPVPFLILMFLIPE 574
Query: 271 SPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQGLYEFSKRQETQKSRNFKETLAAIVEP 330
+P W + +G ++ R +L+ LR DVE E++GL + Q SRN T+ + +
Sbjct: 575 TPRWFVGRGLEERARKALKWLRGKEADVEPELKGLMRSQADADRQASRN---TMLELFKR 631
Query: 331 ACLKPFVILMLYFLIYQFSGVNPVTFYAVNIFKDAGAHVNNNLAAVIMGIVRLIFTIASC 390
LKP I + QFSG+N V FY V IFKDAG+ +++NL +I+GIV T
Sbjct: 632 INLKPLSISLGLMFFQQFSGINAVIFYTVQIFKDAGSTIDSNLCTIIVGIVNFFATFMGI 691
Query: 391 IMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAA 450
+++ ++GR+ L +IS I ++++ LG + F K P+ + + +LP+ + +
Sbjct: 692 LLIDRLGRKILLYISDIAMILTLSILGGF-FYCKAHGPDV---SHLGWLPLTCFVIYILG 747
Query: 451 STIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLTKEGTFLMY 510
++G+ +PW+M+GE+ P K+RG + T F F+ K++ + G F ++
Sbjct: 748 FSLGFGPIPWLMMGEILPAKIRGPAASVVTAFNWFCTFVVTKTFQDLTGAMGAHGAFWLF 807
Query: 511 GCISLLGTIFFYVYLPETKNKTLQEIEEQFAGKSKKHHSEIYVKP 555
G I +G F +Y+PET+ KTL++IE + G+ ++ S +KP
Sbjct: 808 GAICFVGLFFVIIYVPETQGKTLEDIERKMMGRVRRMSSVANIKP 852
|
Low-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph. Drosophila simulans (taxid: 7240) |
| >sp|A5LGM7|TRET1_POLVA Facilitated trehalose transporter Tret1 OS=Polypedilum vanderplanki GN=Tret1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 232 bits (591), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 137/458 (29%), Positives = 250/458 (54%), Gaps = 19/458 (4%)
Query: 104 MVFGFSAAATS-QLISRD----SPYRITSDESTWIASLSAIGTMVGCVLGGYMMDLVGRK 158
MV GF++A TS L+S + +++T E++W+ + + + G + GG ++ +GRK
Sbjct: 55 MVVGFASAYTSPALVSMQNTTITSFKVTEQEASWVGGIMPLAGLAGGIAGGPFIEYLGRK 114
Query: 159 MTLIITEVPTILGWALIALAPSLPSSILPW-IFTGRILTGLGSGMVGAPSRIYTAECSQP 217
T++ T VP I+ W LIA A S+ W + GR L+G G+ +Y E QP
Sbjct: 115 NTILATAVPFIVAWLLIAFANSI------WMVLAGRALSGFCVGIASLSLPVYLGETVQP 168
Query: 218 HLRGMLSSLASFGVSLGVLFEYSLGAFLSWDTVAAISTIIPVLSIIAGCLMPESPSWLLS 277
+RG L L + ++G+L + G +++W +A I +I+P+ ++ L+PE+P W ++
Sbjct: 169 EVRGTLGLLPTAFGNIGILICFVAGKYVNWSGLAFIGSILPIPFMVLTLLIPETPRWFVT 228
Query: 278 QGRKDACRNSLRRLRANNYDVEKEVQGLYEFSKRQETQKSRNFKETLAAIVEPACLKPFV 337
+GR++ R +L+ LR DVE E++G+ + E S+N + +++ + LKP +
Sbjct: 229 RGREERARKALQWLRGKKADVEPELKGIVKSHCEAERHASQN---AIFDLMKRSNLKPLL 285
Query: 338 ILMLYFLIYQFSGVNPVTFYAVNIFKDAGAHVNNNLAAVIMGIVRLIFTIASCIMMKKMG 397
I + Q SG+N V FY V+IFKDAG+ ++ NL +I+G+V T + +++ ++G
Sbjct: 286 IALGLMFFQQLSGINAVIFYTVSIFKDAGSTIDENLCTIIVGVVNFGATFFATVLIDRLG 345
Query: 398 RRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLV 457
R+ L +IS + +++ LG + F K+ + + + +LP+ + + + G
Sbjct: 346 RKILLYISEVAMVITLLTLGTF-FYYKNSGNDV---SNIGWLPLASFVIYVIGFSSGVGP 401
Query: 458 VPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLTKEGTFLMYGCISLLG 517
+PW+M+GE+ P K+RG + T F+ K++ + G F +G I L+G
Sbjct: 402 IPWLMLGEILPGKIRGSAASVATGFNWTCTFIVTKTFADIVAAIGNHGAFWFFGVICLIG 461
Query: 518 TIFFYVYLPETKNKTLQEIEEQFAGKSKKHHSEIYVKP 555
F ++PET+ K+L+EIE + G+ ++ S +KP
Sbjct: 462 LFFVIFFVPETQGKSLEEIERKMMGRVRRMSSVANMKP 499
|
High-capacity facilitative transporter for trehalose, required to induce anhydrobiosis. Anhydrobiotic larvae can survive almost complete dehydration. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph. Polypedilum vanderplanki (taxid: 319348) |
| >sp|Q17NV8|TRET1_AEDAE Facilitated trehalose transporter Tret1 OS=Aedes aegypti GN=Tret1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 231 bits (589), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 137/457 (29%), Positives = 250/457 (54%), Gaps = 17/457 (3%)
Query: 104 MVFGFSAAATS-QLIS-RD---SPYRITSDESTWIASLSAIGTMVGCVLGGYMMDLVGRK 158
MV GFS+A TS L+S +D + + +T +W+ + + + G +LGG +++ +GRK
Sbjct: 357 MVVGFSSAYTSPALVSMKDRNITSFEVTDQSGSWVGGIMPLAGLAGGILGGPLIEYLGRK 416
Query: 159 MTLIITEVPTILGWALIALAPSLPSSILPWIFTGRILTGLGSGMVGAPSRIYTAECSQPH 218
T++ T P I+ W LIA A + + + GR L+G G+ +Y E QP
Sbjct: 417 NTILATATPFIISWLLIACA-----THVAMVLVGRALSGFSVGVASLSLPVYLGETVQPE 471
Query: 219 LRGMLSSLASFGVSLGVLFEYSLGAFLSWDTVAAISTIIPVLSIIAGCLMPESPSWLLSQ 278
+RG L L + ++G+L + G ++ W +A + +P+ ++ L+PE+P W +S+
Sbjct: 472 VRGTLGLLPTAFGNIGILLCFVAGKYMDWSGLAFLGAALPIPFLLLMFLIPETPRWYVSR 531
Query: 279 GRKDACRNSLRRLRANNYDVEKEVQGLYEFSKRQETQKSRNFKETLAAIVEPACLKPFVI 338
GR D R +L+ LR DV+ E++G+ + + E S++ + +++ A LKP +I
Sbjct: 532 GRDDRARKALQWLRGKKADVDPELKGIIKSHQDAERHASQS---AMLDLMKKANLKPLLI 588
Query: 339 LMLYFLIYQFSGVNPVTFYAVNIFKDAGAHVNNNLAAVIMGIVRLIFTIASCIMMKKMGR 398
+ Q SG+N V FY V IF+DAG+ ++ NL +I+G+V I T + +++ ++GR
Sbjct: 589 SLGLMFFQQLSGINAVIFYTVQIFQDAGSTIDENLCTIIVGVVNFIATFIATMLIDRLGR 648
Query: 399 RSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVV 458
+ L +IS + +++ LG + F K+ + + V +LP+ + + ++G+ +
Sbjct: 649 KMLLYISDVAMIITLMTLGGF-FYVKNSGQDV---SQVGWLPLAAFVIYVLGFSLGFGPI 704
Query: 459 PWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLTKEGTFLMYGCISLLGT 518
PW+M+GE+ P K+RG + T F+ K++ + GTF M+G I ++G
Sbjct: 705 PWLMMGEILPGKIRGSAASVATAFNWSCTFIVTKTFADIINAIGTHGTFWMFGSICVIGL 764
Query: 519 IFFYVYLPETKNKTLQEIEEQFAGKSKKHHSEIYVKP 555
F Y+PET+ K+L++IE + G+ ++ S +KP
Sbjct: 765 AFVIFYVPETQGKSLEDIERKMMGRVRRMSSVANIKP 801
|
High-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph. Aedes aegypti (taxid: 7159) |
| >sp|A9ZSY2|TRET1_APILI Facilitated trehalose transporter Tret1 OS=Apis mellifera ligustica GN=Tret1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 231 bits (588), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 142/481 (29%), Positives = 259/481 (53%), Gaps = 24/481 (4%)
Query: 83 QKVSLSLTLAVFANLGNVNTGMVFGFSAAATS-QLIS-RD---SPYRITSDESTWIASLS 137
++ + T+ + A L ++ G+S++ TS L+S RD + + +T D + WI S+
Sbjct: 33 KRSPMRYTMQLLAALAVSMASLMIGYSSSYTSPALVSMRDNTTATFEVTMDMAMWIGSIM 92
Query: 138 AIGTMVGCVLGGYMMDLVGRKMTLIITEVPTILGWALIALAPSLPSSILPWIFTGRILTG 197
+ ++G ++GG ++ +GR+ T++ T +P + GW IALA ++ I GR + G
Sbjct: 93 PLSALIGGIIGGPCIEYIGRRNTILSTALPFLAGWLFIALATNVAM-----ILVGRSICG 147
Query: 198 LGSGMVGAPSRIYTAECSQPHLRGMLSSLASFGVSLGVLFEYSLGAFLSWDTVAAISTII 257
G+ +Y E QP +RG L L + + G+L ++ G +L+W +A + I
Sbjct: 148 FCVGVASLSLPVYLGESIQPEVRGSLGLLPTVFGNSGILMCFTAGMYLAWRNLALLGACI 207
Query: 258 PVLSIIAGCLMPESPSWLLSQGRKDACRNSLRRLRANNYDVEKE---VQGLYEFSKRQET 314
P++ +I L+PE+P W +S+G+ R SL+ LR D+ +E +Q ++ S+R T
Sbjct: 208 PIIFLILMFLIPETPRWYISKGKIKEARKSLQWLRGKTADISEELDSIQKMHIESERIAT 267
Query: 315 QKSRNFKETLAAIVEPACLKPFVILMLYFLIYQFSGVNPVTFYAVNIFKDAGAHVNNNLA 374
+ + L + +KP I + QFSG+N V FY V IFKD+G+ V+ NL+
Sbjct: 268 EGA------LIELFRKNHIKPVFISLGLMFFQQFSGINAVIFYTVQIFKDSGSTVDENLS 321
Query: 375 AVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPA 434
+I+G+V I T + +++ ++GR+ L +ISSI +++ G + F K+ F
Sbjct: 322 TIIVGLVNFISTFVAAMIIDRLGRKMLLYISSILMCITLFTFGTF-FYVKELMDVTAF-- 378
Query: 435 FVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSY 494
++P++ L+ + + G+ +PW+M+GE+ P K+RG + T F+ K+Y
Sbjct: 379 --GWIPLMSLIVYVIGFSFGFGPIPWLMMGEILPVKIRGTAASVATAFNWSCTFVVTKTY 436
Query: 495 NMFQTHLTKEGTFLMYGCISLLGTIFFYVYLPETKNKTLQEIEEQFAGKSKKHHSEIYVK 554
H+ GTF ++G + + IF + +PET+ ++L+EIE +FAG ++ + +K
Sbjct: 437 EDLVLHIGPYGTFWLFGTLVAVAFIFVIICVPETRGRSLEEIERRFAGPVRRTSAIANLK 496
Query: 555 P 555
P
Sbjct: 497 P 497
|
Moderate-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph. Apis mellifera ligustica (taxid: 7469) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 587 | ||||||
| 291461583 | 527 | sugar transporter 12 [Nilaparvata lugens | 0.744 | 0.829 | 0.565 | 1e-150 | |
| 380022321 | 514 | PREDICTED: facilitated trehalose transpo | 0.764 | 0.873 | 0.527 | 1e-140 | |
| 110762820 | 514 | PREDICTED: facilitated trehalose transpo | 0.764 | 0.873 | 0.529 | 1e-140 | |
| 322800745 | 499 | hypothetical protein SINV_13705 [Solenop | 0.763 | 0.897 | 0.524 | 1e-139 | |
| 383854868 | 538 | PREDICTED: facilitated trehalose transpo | 0.764 | 0.834 | 0.525 | 1e-139 | |
| 158285241 | 547 | AGAP007667-PA [Anopheles gambiae str. PE | 0.790 | 0.848 | 0.503 | 1e-138 | |
| 332017821 | 461 | Sugar transporter ERD6-like 6 [Acromyrme | 0.751 | 0.956 | 0.523 | 1e-137 | |
| 340724392 | 541 | PREDICTED: facilitated trehalose transpo | 0.764 | 0.829 | 0.525 | 1e-136 | |
| 312373799 | 645 | hypothetical protein AND_16988 [Anophele | 0.892 | 0.812 | 0.437 | 1e-136 | |
| 345495221 | 523 | PREDICTED: facilitated trehalose transpo | 0.759 | 0.852 | 0.508 | 1e-136 |
| >gi|291461583|dbj|BAI83426.1| sugar transporter 12 [Nilaparvata lugens] | Back alignment and taxonomy information |
|---|
Score = 537 bits (1383), Expect = e-150, Method: Compositional matrix adjust.
Identities = 255/451 (56%), Positives = 333/451 (73%), Gaps = 14/451 (3%)
Query: 95 ANLGNVNTGMVFGFSAAATSQLISRDSPYRITSDESTWIASLSAIGTMVGCVLGGYMMDL 154
AN+G +NTGM FGFSA A QL S +I +++WIASLSA+ T +GC+L GY+MDL
Sbjct: 64 ANIGTINTGMTFGFSAVAIPQLEDLSSEIKIDKFQASWIASLSAVTTPIGCILSGYLMDL 123
Query: 155 VGRKMTLIITEVPTILGWALIALAPSLPSSILPWIFTGRILTGLGSGMVGAPSRIYTAEC 214
+GRK TL+IT++P I+GW +IA A + I+ GR+L GLG GMVGAP+R+YT E
Sbjct: 124 MGRKRTLLITQIPMIIGWLIIAQATRVEE-----IYIGRLLVGLGCGMVGAPARVYTGEV 178
Query: 215 SQPHLRGMLSSLASFGVSLGVLFEYSLGAFLSWDTVAAISTIIPVLSIIAGCLMPESPSW 274
+QPHLRGML+++AS GVSLGV EY GA SW VA +S+ +P ++ I +PE+PSW
Sbjct: 179 TQPHLRGMLAAMASVGVSLGVTLEYMFGALYSWKLVALLSSTVPTVAFICCFFLPETPSW 238
Query: 275 LLSQGRKDACRNSLRRLRANNYDVEKEVQGLYEFSKRQETQKSRNFKETLAAIVEPACLK 334
LLS G+ D CR SL +LR DVE+E+Q + +S + S +KET+ A++ P+ LK
Sbjct: 239 LLSHGQVDKCRKSLVKLRGPTCDVEQELQDMVAYSNKNNLAHSLTWKETIQALIHPSALK 298
Query: 335 PFVILMLYFLIYQFSGVNPVTFYAVNIFKDAGAHVNNNLAAVIMGIVRLIFTIASCIMMK 394
PFVIL LYF+IYQFSGVNPVTFYAV +FKD+GA++N LA V++GIVRL+FT+ +CI+M+
Sbjct: 299 PFVILALYFVIYQFSGVNPVTFYAVEVFKDSGANMNKYLATVLLGIVRLVFTVVACIVMR 358
Query: 395 KMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIG 454
K GRR LTF+SS+ CG SM GLG+Y+ Y F + +LPV ++ F AASTIG
Sbjct: 359 KCGRRPLTFVSSVLCGASMVGLGVYM---------YHFKSSAPWLPVALIFIFIAASTIG 409
Query: 455 YLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLTKEGTFLMYGCIS 514
YLVVPWVMIGEVYPTKVRGI+GGLTTC HF IFL VK++ + Q ++K GTF +YG IS
Sbjct: 410 YLVVPWVMIGEVYPTKVRGIIGGLTTCTAHFSIFLVVKTFPLIQDAISKPGTFCLYGVIS 469
Query: 515 LLGTIFFYVYLPETKNKTLQEIEEQFAGKSK 545
LLGTI+FY+YLPETK +TLQEIE+ F+G++
Sbjct: 470 LLGTIYFYIYLPETKGRTLQEIEDYFSGRTD 500
|
Source: Nilaparvata lugens Species: Nilaparvata lugens Genus: Nilaparvata Family: Delphacidae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|380022321|ref|XP_003694998.1| PREDICTED: facilitated trehalose transporter Tret1-like [Apis florea] | Back alignment and taxonomy information |
|---|
Score = 504 bits (1298), Expect = e-140, Method: Compositional matrix adjust.
Identities = 241/457 (52%), Positives = 333/457 (72%), Gaps = 8/457 (1%)
Query: 92 AVFANLGNVNTGMVFGFSAAATSQLISRDS--PYRITSDESTWIASLSAIGTMVGCVLGG 149
AV A LG +NTGM FGFSA A QL +S P S E +WIAS+S+IGT +GC++ G
Sbjct: 41 AVVAQLGTLNTGMAFGFSAIAVPQLQEPNSSIPIGKGSSEESWIASMSSIGTPIGCLISG 100
Query: 150 YMMDLVGRKMTLIITEVPTILGWALIALAPSLPSSILPWIFTGRILTGLGSGMVGAPSRI 209
YMMD++GRK +LIITE+P +LGW LIA A + I+ GR GLGSGMVGAP+R+
Sbjct: 101 YMMDVLGRKRSLIITEIPALLGWILIACATDVR-----MIYAGRFFVGLGSGMVGAPARV 155
Query: 210 YTAECSQPHLRGMLSSLASFGVSLGVLFEYSLGAFLSWDTVAAISTIIPVLSIIAGCLMP 269
YT E +QPHLRGML++ AS GVS GVL EY LG+ L+W+ AAIS I+P+ +++ P
Sbjct: 156 YTGEVTQPHLRGMLTAFASIGVSTGVLIEYFLGSVLTWNVCAAISGILPLAALLLMFFFP 215
Query: 270 ESPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQGLYEFSKRQETQKSRNFKETLAAIVE 329
E+PS+L+S+ R + R +L+++R + Y++ +E++ L FS ++ ++ + F+E + A+++
Sbjct: 216 ETPSYLISRSRPEKAREALQQVRGSTYNINQEMETLINFSNERDVKRPKGFREIIRALLK 275
Query: 330 PACLKPFVILMLYFLIYQFSGVNPVTFYAVNIFKDAGAHVNNNLAAVIMGIVRLIFTIAS 389
P +KPF +L LYFLIYQ+SG N +TFYAV IF D+GA +N LAAVI+GI+RLI TIA+
Sbjct: 276 PNAIKPFTLLFLYFLIYQWSGTNVITFYAVEIFNDSGATINKYLAAVILGIIRLISTIAA 335
Query: 390 CIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTA 449
CI+ +K GRR LT +SS+GCG+SM GLG Y++ K +W P +++PVL + ++T
Sbjct: 336 CILCRKSGRRPLTMVSSVGCGLSMVGLGGYMW-LKSYWTANNLPFIATWIPVLCIFSYTI 394
Query: 450 ASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLTKEGTFLM 509
A T+G+LV+PW+MIGEVYP +VRGI+GGLTT A H FIF VK+Y + LT GTF+
Sbjct: 395 ACTLGFLVIPWIMIGEVYPVQVRGIIGGLTTMAAHSFIFTVVKTYPYLTSILTTHGTFIF 454
Query: 510 YGCISLLGTIFFYVYLPETKNKTLQEIEEQFAGKSKK 546
YGCISL GTI+FY+ LPETK+KTLQEIE+ F+G++
Sbjct: 455 YGCISLFGTIYFYLCLPETKDKTLQEIEDYFSGRNNN 491
|
Source: Apis florea Species: Apis florea Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|110762820|ref|XP_624970.2| PREDICTED: facilitated trehalose transporter Tret1-like [Apis mellifera] | Back alignment and taxonomy information |
|---|
Score = 504 bits (1297), Expect = e-140, Method: Compositional matrix adjust.
Identities = 242/457 (52%), Positives = 333/457 (72%), Gaps = 8/457 (1%)
Query: 92 AVFANLGNVNTGMVFGFSAAATSQLISRDS--PYRITSDESTWIASLSAIGTMVGCVLGG 149
AV A LG +NTGM FGFSA A QL +S P S E +WIAS+S+IGT +GC++ G
Sbjct: 41 AVVAQLGTLNTGMAFGFSAIAVPQLQEPNSNIPIGKGSSEESWIASMSSIGTPIGCLISG 100
Query: 150 YMMDLVGRKMTLIITEVPTILGWALIALAPSLPSSILPWIFTGRILTGLGSGMVGAPSRI 209
YMMD++GRK +LIITE+P +LGW LIA A + I+ GR GLGSGMVGAP+R+
Sbjct: 101 YMMDVLGRKRSLIITEIPALLGWILIACATDVR-----MIYAGRFFVGLGSGMVGAPARV 155
Query: 210 YTAECSQPHLRGMLSSLASFGVSLGVLFEYSLGAFLSWDTVAAISTIIPVLSIIAGCLMP 269
YT E +QPHLRGML++ AS GVS GVL EY LG+ L+W+ AAIS I+P+ +++ P
Sbjct: 156 YTGEVTQPHLRGMLTAFASIGVSTGVLIEYFLGSVLTWNVCAAISGILPLAALLLMFFFP 215
Query: 270 ESPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQGLYEFSKRQETQKSRNFKETLAAIVE 329
E+PS+L+S+ R + R +L+++R + Y++ +E++ L FS ++ ++ + F+E + A+++
Sbjct: 216 ETPSYLISRSRPEKAREALQQVRGSTYNINQEMETLINFSNERDVKRPKGFREIIRALLK 275
Query: 330 PACLKPFVILMLYFLIYQFSGVNPVTFYAVNIFKDAGAHVNNNLAAVIMGIVRLIFTIAS 389
P +KPF +L LYFLIYQ+SG N +TFYAV IF D+GA +N LAAVI+GI+RLI TIA+
Sbjct: 276 PNAIKPFTLLFLYFLIYQWSGTNVITFYAVEIFNDSGATINKYLAAVILGIIRLISTIAA 335
Query: 390 CIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTA 449
CI+ +K GRR LT +SSIGCG+SM GLG Y++ K +W P +++PVL + ++T
Sbjct: 336 CILCRKSGRRPLTMVSSIGCGLSMVGLGGYMW-LKSYWTANNLPFVATWIPVLCIFSYTI 394
Query: 450 ASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLTKEGTFLM 509
A T+G+LV+PW+MIGEVYP +VRGI+GGLTT A H FIF VK+Y + LT GTF+
Sbjct: 395 ACTLGFLVIPWIMIGEVYPVQVRGIIGGLTTMAAHSFIFTVVKTYPYLTSILTTHGTFIF 454
Query: 510 YGCISLLGTIFFYVYLPETKNKTLQEIEEQFAGKSKK 546
YGCISL GTI+FY+ LPETK+KTLQEIE+ F+G++
Sbjct: 455 YGCISLFGTIYFYLCLPETKDKTLQEIEDYFSGRNNN 491
|
Source: Apis mellifera Species: Apis mellifera Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|322800745|gb|EFZ21649.1| hypothetical protein SINV_13705 [Solenopsis invicta] | Back alignment and taxonomy information |
|---|
Score = 502 bits (1293), Expect = e-139, Method: Compositional matrix adjust.
Identities = 239/456 (52%), Positives = 330/456 (72%), Gaps = 8/456 (1%)
Query: 92 AVFANLGNVNTGMVFGFSAAATSQLISRDS--PYRITSDESTWIASLSAIGTMVGCVLGG 149
A+ A LG +NTGM FGFSA A QL DS P + S E +WIAS+S+IGT +GC+ G
Sbjct: 27 ALVAQLGTINTGMAFGFSAIALPQLQEPDSIIPIKEGSTEESWIASMSSIGTPIGCLASG 86
Query: 150 YMMDLVGRKMTLIITEVPTILGWALIALAPSLPSSILPWIFTGRILTGLGSGMVGAPSRI 209
YMMD+ GRK +LIITEVP +LGW LI A + I+ GR GLGSGMVGAP+R+
Sbjct: 87 YMMDMFGRKRSLIITEVPALLGWLLITFATDIRM-----IYAGRFFVGLGSGMVGAPARV 141
Query: 210 YTAECSQPHLRGMLSSLASFGVSLGVLFEYSLGAFLSWDTVAAISTIIPVLSIIAGCLMP 269
YT+E +QPHLRGML+++AS GVS GVL EY+LG+ L+W+ AAIS I+P+ +++ P
Sbjct: 142 YTSEVTQPHLRGMLTAIASVGVSTGVLIEYALGSMLTWNICAAISGILPLTALLLMFFFP 201
Query: 270 ESPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQGLYEFSKRQETQKSRNFKETLAAIVE 329
E+PS+L+S+ + D + +L++ R + Y+V +E++ L EFS + ++ F+E + A+++
Sbjct: 202 ETPSYLISRSKPDQAKQALQKFRGSTYNVNREMETLVEFSNKNNIKRLTGFREIMCALLK 261
Query: 330 PACLKPFVILMLYFLIYQFSGVNPVTFYAVNIFKDAGAHVNNNLAAVIMGIVRLIFTIAS 389
P LKPF +L LYFLIYQ+SG N +TFYAV IFKD+GA +N LAAVI+GIVRL TI +
Sbjct: 262 PNALKPFTLLFLYFLIYQWSGTNVITFYAVEIFKDSGATMNKYLAAVILGIVRLTSTIVA 321
Query: 390 CIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTA 449
C++ +K GRR LT +SS+GCG SM GLG Y++ K++W P ++ PV+ + ++T
Sbjct: 322 CVLCRKCGRRPLTMVSSVGCGFSMLGLGGYMW-LKNYWFANDMPLVATWFPVMCIFSYTI 380
Query: 450 ASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLTKEGTFLM 509
T+G+LV+PWVMIGEVYP +VRGI+GGLTT H F+F+ VK+Y + LT+ GTF++
Sbjct: 381 TCTLGFLVIPWVMIGEVYPVQVRGIIGGLTTMCAHTFVFMVVKTYPFLASALTRHGTFIL 440
Query: 510 YGCISLLGTIFFYVYLPETKNKTLQEIEEQFAGKSK 545
YGCISL GTI+FY+ LPETK +TLQEIE+ F+G+S
Sbjct: 441 YGCISLFGTIYFYICLPETKGRTLQEIEDYFSGRSN 476
|
Source: Solenopsis invicta Species: Solenopsis invicta Genus: Solenopsis Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|383854868|ref|XP_003702942.1| PREDICTED: facilitated trehalose transporter Tret1-like [Megachile rotundata] | Back alignment and taxonomy information |
|---|
Score = 502 bits (1292), Expect = e-139, Method: Compositional matrix adjust.
Identities = 240/457 (52%), Positives = 336/457 (73%), Gaps = 8/457 (1%)
Query: 92 AVFANLGNVNTGMVFGFSAAATSQLISRDS--PYRITSDESTWIASLSAIGTMVGCVLGG 149
A+ A LG +NTGM FGFSA A QL +S P + S E +WIAS+S+IGT +GC++ G
Sbjct: 64 ALVAQLGTINTGMTFGFSAIALPQLQEPNSTIPIQEGSSEESWIASMSSIGTPIGCLVSG 123
Query: 150 YMMDLVGRKMTLIITEVPTILGWALIALAPSLPSSILPWIFTGRILTGLGSGMVGAPSRI 209
YMMD++GRK +LIITE+P +LGW LIA A ++ I+ GR GLGSGMVGAP+R+
Sbjct: 124 YMMDVLGRKRSLIITEIPALLGWVLIAFATNIE-----MIYAGRFFVGLGSGMVGAPARV 178
Query: 210 YTAECSQPHLRGMLSSLASFGVSLGVLFEYSLGAFLSWDTVAAISTIIPVLSIIAGCLMP 269
YT E +QPHLRGML++ AS GVS GVL EY+LG+ L+W+ AAIS I+P+ +++ L P
Sbjct: 179 YTGEVTQPHLRGMLTAFASIGVSTGVLIEYALGSVLTWNVCAAISGILPLAALLLMFLFP 238
Query: 270 ESPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQGLYEFSKRQETQKSRNFKETLAAIVE 329
E+PS+L+S+ R + R +LR+ R + ++++E++ L FS + ++ F+E ++A+++
Sbjct: 239 ETPSYLISRSRPEKARKALRQFRGSTCNIDQEMETLINFSNKNNIKRLTGFREIVSALLK 298
Query: 330 PACLKPFVILMLYFLIYQFSGVNPVTFYAVNIFKDAGAHVNNNLAAVIMGIVRLIFTIAS 389
P LKPF +L LYFLIYQ+SG N +TFYAV IFKD+G+ +N LAAVI+G+VRL TIA+
Sbjct: 299 PNALKPFTLLFLYFLIYQWSGTNVITFYAVEIFKDSGSALNKYLAAVILGVVRLSSTIAA 358
Query: 390 CIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTA 449
C++ ++ GRR LT +SS+GCG+SM GLG Y++ KD+W Y P ++ PVL + +T
Sbjct: 359 CVLCRRCGRRPLTMVSSVGCGLSMIGLGGYLW-LKDYWTTYNLPLVATWFPVLCIFAYTI 417
Query: 450 ASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLTKEGTFLM 509
T+G+LV+PW+MIGEVYP +VRGI+GGLTT A H FIF+ VK+Y + LT+ GTF++
Sbjct: 418 TCTLGFLVIPWIMIGEVYPVQVRGIIGGLTTMAAHSFIFIVVKTYPFLASALTRHGTFIL 477
Query: 510 YGCISLLGTIFFYVYLPETKNKTLQEIEEQFAGKSKK 546
YGCISL GTI+FY+ LPETK KTLQEIE+ F+G++
Sbjct: 478 YGCISLFGTIYFYLCLPETKGKTLQEIEDYFSGRNNN 514
|
Source: Megachile rotundata Species: Megachile rotundata Genus: Megachile Family: Megachilidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|158285241|ref|XP_308203.4| AGAP007667-PA [Anopheles gambiae str. PEST] gi|157019897|gb|EAA04222.4| AGAP007667-PA [Anopheles gambiae str. PEST] | Back alignment and taxonomy information |
|---|
Score = 499 bits (1285), Expect = e-138, Method: Compositional matrix adjust.
Identities = 239/475 (50%), Positives = 339/475 (71%), Gaps = 11/475 (2%)
Query: 76 RATKAGGQKVSLSLTLAVF-ANLGNVNTGMVFGFSAAATSQLISRDSPYRITSDESTWIA 134
+ KA + ++ +A F AN+G +NTG++FGFSA QL + DS + +S+W+A
Sbjct: 37 QPNKAAERGKAMRQVIAAFVANIGTINTGLIFGFSAVVIPQLQAADSLIPVDESQSSWVA 96
Query: 135 SLSAIGTMVGCVLGGYMMDLVGRKMTLIITEVPTILGWALIALAPSLPSSILPWIFTGRI 194
SLSAIGT +GC+L GY+MD GRK LI T++PTI+GW +IA A S + I+ GR+
Sbjct: 97 SLSAIGTPIGCLLSGYVMDNFGRKKALIATQIPTIIGWIVIACA-----SNVGMIYAGRV 151
Query: 195 LTGLGSGMVGAPSRIYTAECSQPHLRGMLSSLASFGVSLGVLFEYSLGAFLSWDTVAAIS 254
LTG GSGMVGAP+R+YT+E +QPHLRGML +LAS G+SLGVL +Y+LGAF +W ++ +S
Sbjct: 152 LTGFGSGMVGAPARVYTSEVTQPHLRGMLCALASTGISLGVLIQYTLGAFTTWKFLSGVS 211
Query: 255 TIIPVLSIIAGCLMPESPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQGLYEFSKRQET 314
I+PV ++I LMPE+P++L+S+ + + R SL RLR ++Y++++EV+ L F+ +
Sbjct: 212 IIVPVAALILMLLMPETPNYLVSKQKPEKARRSLARLRGSSYNIDREVEQLQSFAAKTNA 271
Query: 315 --QKSRNFKETLAAIVEPACLKPFVILMLYFLIYQFSGVNPVTFYAVNIFKDAGAHVNNN 372
+KS + +ET+ A+V P+CLKPF IL +YF++YQFSGVN +TFYAV IF+D+G ++ N
Sbjct: 272 SGKKSLSLRETVQALVHPSCLKPFAILTIYFMMYQFSGVNTITFYAVEIFRDSGTTMDKN 331
Query: 373 LAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKF 432
+++G+VRLIFTI I++++ GRR LTFIS IGCG +M GLG+Y++ K W
Sbjct: 332 TCTILLGVVRLIFTIVGAILLRRCGRRPLTFISGIGCGFTMVGLGVYLYF-KHQWDTAVP 390
Query: 433 P--AFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLT 490
P ++ PV + F T+G+LVVPWVMIGE+YP KVRG+VGG TTC H F+F+
Sbjct: 391 PIEPTATWFPVACIFIFITTCTVGFLVVPWVMIGELYPMKVRGLVGGFTTCMAHSFVFIV 450
Query: 491 VKSYNMFQTHLTKEGTFLMYGCISLLGTIFFYVYLPETKNKTLQEIEEQFAGKSK 545
VK+Y L + GTF++YGC S +GTIFFY+ LPETK KTLQEIE+ F+G++K
Sbjct: 451 VKTYPFLTHVLERHGTFILYGCFSFVGTIFFYLCLPETKGKTLQEIEDYFSGRTK 505
|
Source: Anopheles gambiae str. PEST Species: Anopheles gambiae Genus: Anopheles Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|332017821|gb|EGI58482.1| Sugar transporter ERD6-like 6 [Acromyrmex echinatior] | Back alignment and taxonomy information |
|---|
Score = 493 bits (1270), Expect = e-137, Method: Compositional matrix adjust.
Identities = 235/449 (52%), Positives = 327/449 (72%), Gaps = 8/449 (1%)
Query: 104 MVFGFSAAATSQLISRDS--PYRITSDESTWIASLSAIGTMVGCVLGGYMMDLVGRKMTL 161
MVFGFSA A QL DS P + S E +WIAS+S+IGT +GC+L GYMMD++GRK +L
Sbjct: 1 MVFGFSAIALPQLQEPDSIIPIKEGSTEESWIASISSIGTPIGCLLSGYMMDMLGRKRSL 60
Query: 162 IITEVPTILGWALIALAPSLPSSILPWIFTGRILTGLGSGMVGAPSRIYTAECSQPHLRG 221
IITE+P ILGW LI A + I+ GR GLGSGMVGAP+R+YT+E +QPHLRG
Sbjct: 61 IITEIPAILGWLLITFATDIRM-----IYAGRFFVGLGSGMVGAPARVYTSEVTQPHLRG 115
Query: 222 MLSSLASFGVSLGVLFEYSLGAFLSWDTVAAISTIIPVLSIIAGCLMPESPSWLLSQGRK 281
ML +LAS GVS GVL EY+LG+ +W+ AAIS I+P+ +++ PE+PS+L+S+ +
Sbjct: 116 MLIALASVGVSTGVLIEYALGSIATWNVCAAISGILPLTALVLMFFFPETPSYLISRSKP 175
Query: 282 DACRNSLRRLRANNYDVEKEVQGLYEFSKRQETQKSRNFKETLAAIVEPACLKPFVILML 341
D + +L++ R + Y+V +E++ L EFS + ++ F+E + A+++P LKPF +L L
Sbjct: 176 DQAKKALQKFRGSTYNVNQELETLVEFSNKNNIKRLTGFREIMCAVLKPNALKPFALLFL 235
Query: 342 YFLIYQFSGVNPVTFYAVNIFKDAGAHVNNNLAAVIMGIVRLIFTIASCIMMKKMGRRSL 401
YFLIYQ+SG N +TFYAV IFKD+GA +N LAAVI+GIVRL TI +C++ ++ GRR L
Sbjct: 236 YFLIYQWSGTNVITFYAVEIFKDSGASMNKYLAAVILGIVRLTSTIVACVLCRRCGRRPL 295
Query: 402 TFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWV 461
T +SSIGCG+SM GLG Y++ K++W E P +++PV+ + +T T+G+LV+PWV
Sbjct: 296 TMVSSIGCGLSMIGLGGYMW-LKNYWIENDLPFVATWVPVMCIFLYTITCTLGFLVIPWV 354
Query: 462 MIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLTKEGTFLMYGCISLLGTIFF 521
MIGEVYP +VRGI+GGLTT H FIF+ VK+Y + LT+ GTF++YGCISL GTI+F
Sbjct: 355 MIGEVYPVQVRGIIGGLTTMCAHSFIFMVVKTYPFLASILTRHGTFILYGCISLFGTIYF 414
Query: 522 YVYLPETKNKTLQEIEEQFAGKSKKHHSE 550
Y+ LPETK++TLQEIE+ F+G++ ++
Sbjct: 415 YICLPETKDRTLQEIEDYFSGRNNALMTD 443
|
Source: Acromyrmex echinatior Species: Acromyrmex echinatior Genus: Acromyrmex Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|340724392|ref|XP_003400566.1| PREDICTED: facilitated trehalose transporter Tret1-like [Bombus terrestris] | Back alignment and taxonomy information |
|---|
Score = 493 bits (1269), Expect = e-136, Method: Compositional matrix adjust.
Identities = 240/457 (52%), Positives = 331/457 (72%), Gaps = 8/457 (1%)
Query: 92 AVFANLGNVNTGMVFGFSAAATSQLISRDSPYRIT--SDESTWIASLSAIGTMVGCVLGG 149
AV A LG +NTGM FGFSA A QL +S I S E +WIAS+S+IGT +GC++ G
Sbjct: 68 AVVAQLGTINTGMTFGFSAIALPQLQEPNSTIPIVEGSSEESWIASMSSIGTPIGCLMSG 127
Query: 150 YMMDLVGRKMTLIITEVPTILGWALIALAPSLPSSILPWIFTGRILTGLGSGMVGAPSRI 209
YMMD++GRK++LIITE+P +LGW LIA A + I+ GR GLGSGMVGAP+R+
Sbjct: 128 YMMDVLGRKLSLIITEIPALLGWILIAFATDIH-----MIYAGRFFVGLGSGMVGAPARV 182
Query: 210 YTAECSQPHLRGMLSSLASFGVSLGVLFEYSLGAFLSWDTVAAISTIIPVLSIIAGCLMP 269
YT E +QPHLRGML++ AS GVS GVL EY LG+ L+W+ AA+S I+P+ +++ L P
Sbjct: 183 YTGEVTQPHLRGMLTAFASIGVSTGVLIEYLLGSVLTWNICAAVSGILPLAALLLMFLFP 242
Query: 270 ESPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQGLYEFSKRQETQKSRNFKETLAAIVE 329
E+PS+L+S+ R D R +LR+ R + ++ +E++ L FS + ++ F+E + A+++
Sbjct: 243 ETPSYLMSRSRPDKAREALRQFRGSTCNINQEMETLINFSNKNNIKRLTGFREIVNALLK 302
Query: 330 PACLKPFVILMLYFLIYQFSGVNPVTFYAVNIFKDAGAHVNNNLAAVIMGIVRLIFTIAS 389
P +KPF +L LYFLIYQ+SG N +TFYAV IF+D+GA +N LAAVI+G+VRL TI +
Sbjct: 303 PNAVKPFTLLFLYFLIYQWSGTNVITFYAVEIFQDSGATLNKYLAAVILGMVRLASTIVA 362
Query: 390 CIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTA 449
CI+ KK GRR LT +SS+GCG+SM GLG Y++ +++W F ++ PVL + ++T
Sbjct: 363 CILCKKCGRRPLTMVSSVGCGLSMIGLGGYMWL-RNYWITNNFQLIATWFPVLCIFSYTV 421
Query: 450 ASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLTKEGTFLM 509
T+G+LV+PWVMIGEVYPT+VRGI+GGLTT A H FIF VK+Y + +T+ GTF++
Sbjct: 422 TCTLGFLVIPWVMIGEVYPTQVRGIIGGLTTMAAHSFIFTVVKTYPFLASSITRHGTFIL 481
Query: 510 YGCISLLGTIFFYVYLPETKNKTLQEIEEQFAGKSKK 546
YGCISL GTI+FY+ LPETK KTLQEIE+ F+G++
Sbjct: 482 YGCISLFGTIYFYLCLPETKGKTLQEIEDYFSGRNDD 518
|
Source: Bombus terrestris Species: Bombus terrestris Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|312373799|gb|EFR21483.1| hypothetical protein AND_16988 [Anopheles darlingi] | Back alignment and taxonomy information |
|---|
Score = 493 bits (1268), Expect = e-136, Method: Compositional matrix adjust.
Identities = 254/581 (43%), Positives = 367/581 (63%), Gaps = 57/581 (9%)
Query: 6 KGSSLKQVAAAVFANLGNVNTGMVFGFSAAATSQLISRDSPYRITSDESTWIGEGSLKGI 65
+G +++QV AA AN+G +NTG++FGFSA QL + DS + +S+W+G
Sbjct: 107 RGKAMRQVIAAFIANIGTINTGLIFGFSAVVIPQLQAPDSLIPVDESQSSWVGT------ 160
Query: 66 WGSPVRLRLLRATKAGGQKVSLSLTLAVFANLGNVNTGMVFGFSAAATSQLISRDSPYRI 125
P + + G V + + A L P R
Sbjct: 161 --YPSSYNHMACCDSNGISVPHAQHMTTKAIL------------------------PKRG 194
Query: 126 TSDESTWIASLSAIGTMVGCVLGGYMMDLVGRKMTLIITEVPTILGWALIALAPSLPSSI 185
ASLSAIGT +GC+L GY+MD GRK LI+T++PTI+GW IA A S
Sbjct: 195 RE------ASLSAIGTPIGCLLSGYVMDTFGRKKALIVTQIPTIIGWITIACASS----- 243
Query: 186 LPWIFTGRILTGLGSGMVGAPSRIYTAECSQPHLRGMLSSLASFGVSLGVLFEYSLGAFL 245
+ WI+ GR+LTG GSGMVGAP+R+YT+E +QPHLRGML +LAS G+SLGVL +Y+LGA
Sbjct: 244 VGWIYAGRVLTGFGSGMVGAPARVYTSEVTQPHLRGMLCALASTGISLGVLIQYTLGAVT 303
Query: 246 SWDTVAAISTIIPVLSIIAGCLMPESPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQGL 305
+W ++ IS I+PVL++I LMPE+P++L+S+ + + SL +LR +NY++++EV L
Sbjct: 304 TWKILSGISIIVPVLALILMLLMPETPNYLVSKQKPEKALKSLAKLRGSNYNLQREVNQL 363
Query: 306 YEFSKRQET--QKSRNFKETLAAIVEPACLKPFVILMLYFLIYQFSGVNPVTFYAVNIFK 363
F+ + + +K F+ET+ A+V P+CLKPF IL +YF++YQFSGVN +TFYAV IF+
Sbjct: 364 QAFAAKTNSGNKKKLTFRETVQALVHPSCLKPFAILTIYFMMYQFSGVNTITFYAVEIFR 423
Query: 364 DAGAHVNNNLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFAT 423
D+G ++ +++G+VRLIFTI I++++ GRR LTF+S IGCG++M GLG+Y++
Sbjct: 424 DSGTTMDKYTCTILLGVVRLIFTILGAILLRRCGRRPLTFVSGIGCGLTMVGLGVYLYFK 483
Query: 424 KDFWPEYKFPAF---VSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTT 480
+ + E P ++ PV + F A T+G+L+VPWVMIGE+YP KVRG++GGLTT
Sbjct: 484 RQW--EMATPPIEPTATWFPVACIFIFIMACTVGFLIVPWVMIGELYPMKVRGLIGGLTT 541
Query: 481 CACHFFIFLTVKSYNMFQTHLTKEGTFLMYGCISLLGTIFFYVYLPETKNKTLQEIEEQF 540
C H F+F VK+Y + L + GTF++YGC S +GTIFFY+ LPETK KTLQEIE+ F
Sbjct: 542 CMAHSFVFAVVKTYPLLTHVLERHGTFILYGCFSFVGTIFFYLCLPETKGKTLQEIEDYF 601
Query: 541 AGKSKK-------HHSEIYVKPSQQKLILSSDDLITSEKPK 574
+G++K + V+ Q+L+ + L+T EK K
Sbjct: 602 SGRTKTLKKGKANGGNGAGVESDGQQLLEAKPQLLTVEKNK 642
|
Source: Anopheles darlingi Species: Anopheles darlingi Genus: Anopheles Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|345495221|ref|XP_001604742.2| PREDICTED: facilitated trehalose transporter Tret1-like [Nasonia vitripennis] | Back alignment and taxonomy information |
|---|
Score = 493 bits (1268), Expect = e-136, Method: Compositional matrix adjust.
Identities = 233/458 (50%), Positives = 328/458 (71%), Gaps = 12/458 (2%)
Query: 92 AVFANLGNVNTGMVFGFSAAATSQLISRDSPYRITSDESTWIASLSAIGTMVGCVLGGYM 151
A+ A LG VNTGMVF +SA A QL + DS I + +WIAS+SAIGT +GC+ GY+
Sbjct: 57 ALVAQLGTVNTGMVFAYSAIAIPQLKANDSAIPIDDSQQSWIASMSAIGTPIGCLFTGYL 116
Query: 152 MDLVGRKMTLIITEVPTILGWALIALAPSLPSSILPWIFTGRILTGLGSGMVGAPSRIYT 211
MD++GRK +LI+TE+P +LGW LI A S + I+ GR TGLGSGMVGAP+R+YT
Sbjct: 117 MDVLGRKYSLIVTEIPALLGWILIFYA-----SDVRMIYAGRFFTGLGSGMVGAPARVYT 171
Query: 212 AECSQPHLRGMLSSLASFGVSLGVLFEYSLGAFLSWDTVAAISTIIPVLSIIAGCLMPES 271
+E +QPHLRG L+++AS GVS GVL EY+LGA L+W TVA IS I+P +++ L PE+
Sbjct: 172 SEVTQPHLRGTLTAIASVGVSTGVLVEYTLGAVLNWKTVAGISAIVPAAAVVLMFLFPET 231
Query: 272 PSWLLSQGRKDACRNSLRRLRANNYDVEKEVQGLYEFSKRQETQKSRNFKETLAAIVEPA 331
PS+L+S ++ R SL++ R+ +YD+ +E+ L FS + ++ +E L A+V+P
Sbjct: 232 PSYLISVNKQQEARESLQKFRSTSYDLNEEMDTLVNFSNKNNLKRLTGLREILKALVQPN 291
Query: 332 CLKPFVILMLYFLIYQFSGVNPVTFYAVNIFKDAGAHVNNNLAAVIMGIVRLIFTIASCI 391
LKPF +L LYFLIYQ++G N VTFYAV+I D+G +N L AV++G+VRL TIA+CI
Sbjct: 292 ALKPFALLFLYFLIYQWTGTNAVTFYAVDIIADSGIKLNKYLVAVLLGVVRLASTIAACI 351
Query: 392 MMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAAS 451
++ GRR +TFISSIGCGV+M G Y+ + KD Y S++PV+ +M +T A
Sbjct: 352 ACRRFGRRPMTFISSIGCGVAMLSFGSYV-SFKDQLSNY------SWIPVVCIMGYTIAC 404
Query: 452 TIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLTKEGTFLMYG 511
T+G+LV+PW+MIGE+YP ++RG+ GGLTT + HFF+F VK+Y M + L+++G + +YG
Sbjct: 405 TLGFLVIPWIMIGEIYPVQIRGLAGGLTTMSTHFFVFTVVKTYPMLVSSLSQQGVYFLYG 464
Query: 512 CISLLGTIFFYVYLPETKNKTLQEIEEQFAGKSKKHHS 549
IS++GTI+FY+ LPETKNKTLQEIE+ F+G++ H+
Sbjct: 465 TISIVGTIYFYICLPETKNKTLQEIEDYFSGRNNNLHT 502
|
Source: Nasonia vitripennis Species: Nasonia vitripennis Genus: Nasonia Family: Pteromalidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 587 | ||||||
| FB|FBgn0050035 | 857 | Tret1-1 "Trehalose transporter | 0.807 | 0.553 | 0.293 | 1.2e-65 | |
| UNIPROTKB|B4HNS0 | 857 | Tret1-1 "Facilitated trehalose | 0.807 | 0.553 | 0.293 | 4.1e-65 | |
| UNIPROTKB|B4QBN2 | 857 | Tret1-1 "Facilitated trehalose | 0.807 | 0.553 | 0.295 | 4.1e-65 | |
| UNIPROTKB|B0WC46 | 517 | Tret1 "Facilitated trehalose t | 0.775 | 0.880 | 0.304 | 5.2e-65 | |
| UNIPROTKB|Q17NV8 | 806 | Tret1 "Facilitated trehalose t | 0.764 | 0.557 | 0.306 | 3.7e-64 | |
| UNIPROTKB|Q7PIR5 | 793 | Tret1 "Facilitated trehalose t | 0.764 | 0.566 | 0.306 | 3.7e-64 | |
| UNIPROTKB|A9ZSY3 | 505 | Tret1 "Facilitated trehalose t | 0.766 | 0.891 | 0.315 | 7.6e-64 | |
| FB|FBgn0034045 | 521 | CG8249 [Drosophila melanogaste | 0.807 | 0.909 | 0.326 | 1.2e-63 | |
| UNIPROTKB|A9ZSY2 | 502 | Tret1 "Facilitated trehalose t | 0.768 | 0.898 | 0.306 | 1.2e-63 | |
| UNIPROTKB|B4HNS1 | 488 | Tret1-2 "Facilitated trehalose | 0.768 | 0.924 | 0.302 | 1.6e-63 |
| FB|FBgn0050035 Tret1-1 "Trehalose transporter 1-1" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 668 (240.2 bits), Expect = 1.2e-65, P = 1.2e-65
Identities = 144/491 (29%), Positives = 261/491 (53%)
Query: 67 GSPVRLRLLRATKAGGQKVSLSLTLAVFANLGNVNTGMVFGFSAAATSQLISRD-SPYRI 125
G P +L + R T + + A+ +LG++ G V +++ A + R+ + + +
Sbjct: 377 GKP-KLEVYRPT-TNPIYIWTQVLAALSVSLGSLVVGFVSAYTSPALVSMTDRNITSFEV 434
Query: 126 TSDESTWIASLSAIGTMVGCVLGGYMMDLVGRKMTLIITEVPTILGWALIALAPSLPSSI 185
T D +W+ + + + G + GG +++ +GR+ T++ T VP I+ LIA A ++
Sbjct: 435 TQDAGSWVGGIMPLAGLAGGIAGGPLIEYLGRRNTILATAVPFIVSSLLIACAVNVAM-- 492
Query: 186 LPWIFTGRILTGLGSGMVGAPSRIYTAECSQPHLRGMLSSL-ASFGVSLGVLFEYSLGAF 244
+ GR L G G+ +Y E QP +RG L L +FG ++G+L + G+F
Sbjct: 493 ---VLCGRFLAGFCVGIASLSLPVYLGETVQPEVRGTLGLLPTAFG-NIGILLCFVAGSF 548
Query: 245 LSWDTVAAISTIIPVLSIIAGCLMPESPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQG 304
++W +A + +PV +I L+PE+P W + +G ++ R +L+ LR DVE E++G
Sbjct: 549 MNWSMLAFLGAALPVPFLILMFLIPETPRWFVGRGLEERARKALKWLRGKEADVEPELKG 608
Query: 305 LYEFSKRQETQKSRNFKETLAAIVEPACLKPFVILMLYFLIYQFSGVNPVTFYAVNIFKD 364
L + Q SRN T+ +++ LKP I + QFSG+N V FY V IFKD
Sbjct: 609 LMRSQADADRQASRN---TMLELLKLNNLKPLSISLGLMFFQQFSGINAVIFYTVQIFKD 665
Query: 365 AGAHVNNNLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATK 424
AG+ ++ NL +I+GIV + T +++ + GR+ L ++S I +++ LG + + K
Sbjct: 666 AGSTIDGNLCTIIVGIVNFLATFIGIVLIDRAGRKILLYVSDIAMVLTLFVLGGFFYC-K 724
Query: 425 DFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACH 484
+ P+ + + +LP+ + + ++G+ +PW+M+GE+ P K+RG + T
Sbjct: 725 TYGPDV---SHLGWLPLTCFVIYILGFSLGFGPIPWLMMGEILPAKIRGSAASVATAFNW 781
Query: 485 FFIFLTVKSYNMFQTHLTKEGTFLMYGCISLLGTIFFYVYLPETKNKTLQEIEEQFAGKS 544
F F+ K++ + G F ++G I +G F +Y+PET+ KTL++IE + G+
Sbjct: 782 FCTFVVTKTFQDLTVAMGAHGAFWLFGAICFVGLFFVIIYVPETQGKTLEDIERKMMGRV 841
Query: 545 KKHHSEIYVKP 555
++ S +KP
Sbjct: 842 RRMSSVANIKP 852
|
|
| UNIPROTKB|B4HNS0 Tret1-1 "Facilitated trehalose transporter Tret1-1" [Drosophila sechellia (taxid:7238)] | Back alignment and assigned GO terms |
|---|
Score = 663 (238.4 bits), Expect = 4.1e-65, P = 4.1e-65
Identities = 144/491 (29%), Positives = 260/491 (52%)
Query: 67 GSPVRLRLLRATKAGGQKVSLSLTLAVFANLGNVNTGMVFGFSAAATSQLISRD-SPYRI 125
G P +L + R T + + A+ +LG++ G V +++ A + R+ + + +
Sbjct: 377 GKP-KLEVYRPT-TNPIYIWTQVLAALSVSLGSLVVGFVSAYTSPALVSMTDRNITSFEV 434
Query: 126 TSDESTWIASLSAIGTMVGCVLGGYMMDLVGRKMTLIITEVPTILGWALIALAPSLPSSI 185
T D +W+ + + + G + GG +++ +GR+ T++ T VP I+ LIA A ++
Sbjct: 435 TQDAGSWVGGIMPLAALAGGITGGPLIEYLGRRNTILATAVPFIVSSLLIACAVNVAM-- 492
Query: 186 LPWIFTGRILTGLGSGMVGAPSRIYTAECSQPHLRGMLSSL-ASFGVSLGVLFEYSLGAF 244
+ GR L G G+ +Y E QP +RG L L +FG ++G+L + G+F
Sbjct: 493 ---VLCGRFLAGFCVGIASLSLPVYLGETVQPEVRGTLGLLPTAFG-NIGILLCFVAGSF 548
Query: 245 LSWDTVAAISTIIPVLSIIAGCLMPESPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQG 304
++W +A + +PV +I L+PE+P W + +G ++ R +L+ LR DVE E++G
Sbjct: 549 MNWSMLAFLGAALPVPFLILMFLIPETPRWFVGRGLEERARKALKWLRGKEADVEPELKG 608
Query: 305 LYEFSKRQETQKSRNFKETLAAIVEPACLKPFVILMLYFLIYQFSGVNPVTFYAVNIFKD 364
L + Q SRN T+ +++ LKP I + QFSG+N V FY V IFKD
Sbjct: 609 LMRSQADADRQASRN---TMLELLKLNNLKPLSISLGLMFFQQFSGINAVIFYTVQIFKD 665
Query: 365 AGAHVNNNLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATK 424
AG+ ++ NL +I+GIV + T +++ + GR+ L ++S I +++ LG + + K
Sbjct: 666 AGSTIDGNLCTIIVGIVNFLATFIGIVLIDRAGRKILLYVSDIAMVLTLFVLGGFFYC-K 724
Query: 425 DFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACH 484
P+ + + +LP+ + + ++G+ +PW+M+GE+ P K+RG + T
Sbjct: 725 ANGPDV---SHLGWLPLTCFVIYILGFSLGFGPIPWLMMGEILPAKIRGSAASVATAFNW 781
Query: 485 FFIFLTVKSYNMFQTHLTKEGTFLMYGCISLLGTIFFYVYLPETKNKTLQEIEEQFAGKS 544
F F+ K++ + G F ++G I +G F +Y+PET+ KTL++IE + G+
Sbjct: 782 FCTFVVTKTFQDLTVAMGAHGAFWLFGAICFVGLFFVIIYVPETQGKTLEDIERKMMGRV 841
Query: 545 KKHHSEIYVKP 555
++ S +KP
Sbjct: 842 RRMSSVANIKP 852
|
|
| UNIPROTKB|B4QBN2 Tret1-1 "Facilitated trehalose transporter Tret1-1" [Drosophila simulans (taxid:7240)] | Back alignment and assigned GO terms |
|---|
Score = 663 (238.4 bits), Expect = 4.1e-65, P = 4.1e-65
Identities = 145/491 (29%), Positives = 261/491 (53%)
Query: 67 GSPVRLRLLRATKAGGQKVSLSLTLAVFANLGNVNTGMVFGFSAAATSQLISRD-SPYRI 125
G P +L + R T + + A+ +LG++ G V +++ A + R+ + + +
Sbjct: 377 GKP-KLEVYRPT-TNPIYIWTQVLAALSVSLGSLVVGFVSAYTSPALVSMTDRNITSFEV 434
Query: 126 TSDESTWIASLSAIGTMVGCVLGGYMMDLVGRKMTLIITEVPTILGWALIALAPSLPSSI 185
T D +W+ + + + G + GG +++ +GR+ T++ T VP I+ LIA A ++
Sbjct: 435 TQDAGSWVGGIMPLAGLAGGIAGGPLIEYLGRRNTILATAVPFIVSSLLIACAVNVAM-- 492
Query: 186 LPWIFTGRILTGLGSGMVGAPSRIYTAECSQPHLRGMLSSL-ASFGVSLGVLFEYSLGAF 244
+ GR L G G+ +Y E QP +RG L L +FG ++G+L + G+F
Sbjct: 493 ---VLCGRFLAGFCVGIASLSLPVYLGETVQPEVRGTLGLLPTAFG-NIGILLCFVAGSF 548
Query: 245 LSWDTVAAISTIIPVLSIIAGCLMPESPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQG 304
++W +A + +PV +I L+PE+P W + +G ++ R +L+ LR DVE E++G
Sbjct: 549 MNWSMLAFLGAALPVPFLILMFLIPETPRWFVGRGLEERARKALKWLRGKEADVEPELKG 608
Query: 305 LYEFSKRQETQKSRNFKETLAAIVEPACLKPFVILMLYFLIYQFSGVNPVTFYAVNIFKD 364
L + Q SRN T+ + + LKP I + QFSG+N V FY V IFKD
Sbjct: 609 LMRSQADADRQASRN---TMLELFKRINLKPLSISLGLMFFQQFSGINAVIFYTVQIFKD 665
Query: 365 AGAHVNNNLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATK 424
AG+ +++NL +I+GIV T +++ ++GR+ L +IS I ++++ LG + + K
Sbjct: 666 AGSTIDSNLCTIIVGIVNFFATFMGILLIDRLGRKILLYISDIAMILTLSILGGFFYC-K 724
Query: 425 DFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACH 484
P+ + + +LP+ + + ++G+ +PW+M+GE+ P K+RG + T
Sbjct: 725 AHGPDV---SHLGWLPLTCFVIYILGFSLGFGPIPWLMMGEILPAKIRGPAASVVTAFNW 781
Query: 485 FFIFLTVKSYNMFQTHLTKEGTFLMYGCISLLGTIFFYVYLPETKNKTLQEIEEQFAGKS 544
F F+ K++ + G F ++G I +G F +Y+PET+ KTL++IE + G+
Sbjct: 782 FCTFVVTKTFQDLTGAMGAHGAFWLFGAICFVGLFFVIIYVPETQGKTLEDIERKMMGRV 841
Query: 545 KKHHSEIYVKP 555
++ S +KP
Sbjct: 842 RRMSSVANIKP 852
|
|
| UNIPROTKB|B0WC46 Tret1 "Facilitated trehalose transporter Tret1" [Culex quinquefasciatus (taxid:7176)] | Back alignment and assigned GO terms |
|---|
Score = 662 (238.1 bits), Expect = 5.2e-65, P = 5.2e-65
Identities = 146/479 (30%), Positives = 262/479 (54%)
Query: 84 KVSLSLTLAVFA-NLGNVNTGMVFGFSAAATSQ-LIS-RD---SPYRITSDESTWIASLS 137
K + S LA + +LG+ MV GFS+A TS L+S +D + + +T +W+ +
Sbjct: 51 KCTFSQVLAALSVSLGS----MVVGFSSAYTSPALVSMKDRNITSFEVTDQSGSWVGGIM 106
Query: 138 AIGTMVGCVLGGYMMDLVGRKMTLIITEVPTILGWALIALAPSLPSSILPWIFTGRILTG 197
+ +VG +LGG +++ +GRK T++ T P I+ W LIA A + + GR L+G
Sbjct: 107 PLAGLVGGILGGPLIEYLGRKNTILATATPFIISWLLIACATHVAM-----VLVGRALSG 161
Query: 198 LGSGMVGAPSRIYTAECSQPHLRGMLSSL-ASFGVSLGVLFEYSLGAFLSWDTVAAISTI 256
G+ +Y E QP +RG L L +FG ++G+L + G ++ W +A +
Sbjct: 162 FSVGVASLSLPVYLGETVQPEVRGTLGLLPTAFG-NIGILLCFVAGNYMDWSELAFLGAT 220
Query: 257 IPVLSIIAGCLMPESPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQGLYEFSKRQETQK 316
+PV +I L+PE+P W +S+GR D R +L+ LR DV+ E++G+ + + E
Sbjct: 221 LPVPFLILMFLIPETPRWYVSRGRDDRARKALQWLRGKKADVDPELKGIIKSHQDAERHA 280
Query: 317 SRNFKETLAAIVEPACLKPFVILMLYFLIYQFSGVNPVTFYAVNIFKDAGAHVNNNLAAV 376
S++ + +++ LKP +I + Q SG+N V FY V IF+DAG+ ++ NL +
Sbjct: 281 SQS---AMLDLLKKTNLKPLLISLGLMFFQQLSGINAVIFYTVQIFQDAGSTIDENLCTI 337
Query: 377 IMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFV 436
I+G+V I T + +++ ++GR+ L +IS I +++ LG + F K+ + + +
Sbjct: 338 IVGVVNFIATFIATLLIDRLGRKMLLYISDIAMIITLMTLGGF-FYVKNNGGDV---SHI 393
Query: 437 SYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNM 496
+LP+ + F ++G+ +PW+M+GE+ P K+RG + T F+ K++
Sbjct: 394 GWLPLASFVIFVLGFSLGFGPIPWLMMGEILPGKIRGSAASVATAFNWSCTFVVTKTFAD 453
Query: 497 FQTHLTKEGTFLMYGCISLLGTIFFYVYLPETKNKTLQEIEEQFAGKSKKHHSEIYVKP 555
+ G F M+G + ++G +F +Y+PET+ K+L++IE + G+ ++ S +KP
Sbjct: 454 IIASIGTHGAFWMFGSVCVVGLVFVIMYVPETQGKSLEDIERKMCGRVRRMSSVANIKP 512
|
|
| UNIPROTKB|Q17NV8 Tret1 "Facilitated trehalose transporter Tret1" [Aedes aegypti (taxid:7159)] | Back alignment and assigned GO terms |
|---|
Score = 654 (235.3 bits), Expect = 3.7e-64, P = 3.7e-64
Identities = 144/470 (30%), Positives = 258/470 (54%)
Query: 93 VFANLGNVNTG-MVFGFSAAATSQ-LIS-RD---SPYRITSDESTWIASLSAIGTMVGCV 146
V A L +V+ G MV GFS+A TS L+S +D + + +T +W+ + + + G +
Sbjct: 346 VLAAL-SVSLGSMVVGFSSAYTSPALVSMKDRNITSFEVTDQSGSWVGGIMPLAGLAGGI 404
Query: 147 LGGYMMDLVGRKMTLIITEVPTILGWALIALAPSLPSSILPWIFTGRILTGLGSGMVGAP 206
LGG +++ +GRK T++ T P I+ W LIA A + + GR L+G G+
Sbjct: 405 LGGPLIEYLGRKNTILATATPFIISWLLIACATHVAM-----VLVGRALSGFSVGVASLS 459
Query: 207 SRIYTAECSQPHLRGMLSSL-ASFGVSLGVLFEYSLGAFLSWDTVAAISTIIPVLSIIAG 265
+Y E QP +RG L L +FG ++G+L + G ++ W +A + +P+ ++
Sbjct: 460 LPVYLGETVQPEVRGTLGLLPTAFG-NIGILLCFVAGKYMDWSGLAFLGAALPIPFLLLM 518
Query: 266 CLMPESPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQGLYEFSKRQETQKSRNFKETLA 325
L+PE+P W +S+GR D R +L+ LR DV+ E++G+ + + E S++ +
Sbjct: 519 FLIPETPRWYVSRGRDDRARKALQWLRGKKADVDPELKGIIKSHQDAERHASQS---AML 575
Query: 326 AIVEPACLKPFVILMLYFLIYQFSGVNPVTFYAVNIFKDAGAHVNNNLAAVIMGIVRLIF 385
+++ A LKP +I + Q SG+N V FY V IF+DAG+ ++ NL +I+G+V I
Sbjct: 576 DLMKKANLKPLLISLGLMFFQQLSGINAVIFYTVQIFQDAGSTIDENLCTIIVGVVNFIA 635
Query: 386 TIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLM 445
T + +++ ++GR+ L +IS + +++ LG + F K+ + + V +LP+ +
Sbjct: 636 TFIATMLIDRLGRKMLLYISDVAMIITLMTLGGF-FYVKNSGQDV---SQVGWLPLAAFV 691
Query: 446 TFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLTKEG 505
+ ++G+ +PW+M+GE+ P K+RG + T F+ K++ + G
Sbjct: 692 IYVLGFSLGFGPIPWLMMGEILPGKIRGSAASVATAFNWSCTFIVTKTFADIINAIGTHG 751
Query: 506 TFLMYGCISLLGTIFFYVYLPETKNKTLQEIEEQFAGKSKKHHSEIYVKP 555
TF M+G I ++G F Y+PET+ K+L++IE + G+ ++ S +KP
Sbjct: 752 TFWMFGSICVIGLAFVIFYVPETQGKSLEDIERKMMGRVRRMSSVANIKP 801
|
|
| UNIPROTKB|Q7PIR5 Tret1 "Facilitated trehalose transporter Tret1" [Anopheles gambiae (taxid:7165)] | Back alignment and assigned GO terms |
|---|
Score = 654 (235.3 bits), Expect = 3.7e-64, P = 3.7e-64
Identities = 144/470 (30%), Positives = 254/470 (54%)
Query: 93 VFANLGNVNTG-MVFGFSAAATSQ-LIS-RD---SPYRITSDESTWIASLSAIGTMVGCV 146
V A L +V+ G MV GFS+A TS L+S +D + + +T +W+ + + + G +
Sbjct: 333 VLAAL-SVSLGSMVVGFSSAYTSPALVSMKDRNITSFEVTDQSGSWVGGIMPLAGLAGGI 391
Query: 147 LGGYMMDLVGRKMTLIITEVPTILGWALIALAPSLPSSILPWIFTGRILTGLGSGMVGAP 206
LGG M++ +GRK T++ T P I+ W LI A + + GR L+GL G+
Sbjct: 392 LGGPMIEYLGRKNTILATATPFIISWLLIGCATHVAM-----VLVGRALSGLCVGIASLS 446
Query: 207 SRIYTAECSQPHLRGMLSSL-ASFGVSLGVLFEYSLGAFLSWDTVAAISTIIPVLSIIAG 265
+Y E QP +RG L L +FG ++G+L + G +L W +A + +P+ ++
Sbjct: 447 LPVYLGETVQPEVRGTLGLLPTAFG-NIGILLCFVAGKYLDWSGLAFLGAALPIPFLLLM 505
Query: 266 CLMPESPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQGLYEFSKRQETQKSRNFKETLA 325
L+PE+P W +S+ R+D R +L+ LR DVE E++G+ SK + + +
Sbjct: 506 FLIPETPRWYVSRNREDRARKALQWLRGRKADVEPELKGI---SKSHQDAERHASSSAML 562
Query: 326 AIVEPACLKPFVILMLYFLIYQFSGVNPVTFYAVNIFKDAGAHVNNNLAAVIMGIVRLIF 385
++ A LKP +I + Q SG+N V FY V IF+ AG+ ++ L +I+G+V I
Sbjct: 563 DLLNKANLKPLLISLGLMFFQQLSGINAVIFYTVQIFQSAGSTIDEKLCTIIVGVVNFIA 622
Query: 386 TIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLM 445
T + +++ ++GR+ L +IS + +++ LG + F K+ + + + +LP+ +
Sbjct: 623 TFIATVLIDRLGRKILLYISDVAMIITLMTLGTF-FYMKNNGDDV---SEIGWLPLAAFV 678
Query: 446 TFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLTKEG 505
F ++G+ +PW+M+GE+ P K+RG + T F+ K++ + G
Sbjct: 679 VFVVGFSLGFGPIPWLMMGEILPGKIRGSAASVATAFNWSCTFVVTKTFADITASIGNHG 738
Query: 506 TFLMYGCISLLGTIFFYVYLPETKNKTLQEIEEQFAGKSKKHHSEIYVKP 555
F M+G I ++G +F VY+PET+ K+L++IE + G+ ++ S +KP
Sbjct: 739 AFWMFGSICIVGLLFVIVYVPETQGKSLEDIERKMMGRVRRMSSVANIKP 788
|
|
| UNIPROTKB|A9ZSY3 Tret1 "Facilitated trehalose transporter Tret1" [Bombyx mori (taxid:7091)] | Back alignment and assigned GO terms |
|---|
Score = 651 (234.2 bits), Expect = 7.6e-64, P = 7.6e-64
Identities = 149/472 (31%), Positives = 263/472 (55%)
Query: 79 KAGGQKVSL-SLTLAVFA-NLGNVNTGMVFGFSAAATSQLISRDSPYRITSDESTWIASL 136
K+ QK+ L + LA FA ++G++N G G+++ A +++ + IT +E TW+ L
Sbjct: 40 KSTTQKLFLWTQLLAAFAVSVGSMNVGFSSGYTSPA---VLTMNITLDITKEEITWVGGL 96
Query: 137 SAIGTMVGCVLGGYMMDLVGRKMTLIITEVPTILGWALIALAPSLPSSILPWIFTGRILT 196
+ +VG ++GG +++ +GRK T++ T VP +GW LIA A ++ ++ +F GR++
Sbjct: 97 MPLAALVGGIVGGPLIEYLGRKKTIMGTAVPFTIGWMLIANAINV---VM--VFAGRVIC 151
Query: 197 GLGSGMVGAPSRIYTAECSQPHLRGMLSSL-ASFGVSLGVLFEYSLGAFLSWDTVAAIST 255
G+ G+V +Y E QP +RG L L +FG + G+L + +G++L W +A
Sbjct: 152 GVCVGIVSLAFPVYIGETIQPEVRGALGLLPTAFG-NTGILLAFLVGSYLDWSNLAFFGA 210
Query: 256 IIPVLSIIAGCLMPESPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQGLYEFSKRQETQ 315
IPV + L PE+P W +S+ R R SLR LR N ++EKE++ L S+ + +
Sbjct: 211 AIPVPFFLLMILTPETPRWYVSKARVQEARKSLRWLRGKNVNIEKEMRDL-TISQTESDR 269
Query: 316 KSRN-FKETLAAIVEPACLKPFVILMLYFLIYQFSGVNPVTFYAVNIFKDAGAHVNNNLA 374
N FK+ + PA + I + L Q +G+N V FYA +IF+ +G+ V+ NLA
Sbjct: 270 TGGNAFKQLFSKRYLPAVM----ISLGLMLFQQLTGINAVIFYAASIFQMSGSSVDENLA 325
Query: 375 AVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPA 434
++I+G+V I T + +++ ++GR+ L +ISS+ ++ LG Y + ++ A
Sbjct: 326 SIIIGVVNFISTFIATMLIDRLGRKVLLYISSVAMITTLLALGAYFYLKQN---HIDVTA 382
Query: 435 FVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSY 494
+ +LP+ L+ + +IG+ +PW+M+GE+ P+K+RG L T F+ K++
Sbjct: 383 Y-GWLPLACLVIYVLGFSIGFGPIPWLMLGEILPSKIRGTAASLATGFNWTCTFIVTKTF 441
Query: 495 NMFQTHLTKEGTFLMYGCISLLGTIFFYVYLPETKNKTLQEIEEQFAGKSKK 546
+ GT ++ I + G +F ++PETK K+L+EIE + S++
Sbjct: 442 QNIIDAIYMHGTLWLFAVICIGGLLFVIFFVPETKGKSLEEIEMKLTSGSRR 493
|
|
| FB|FBgn0034045 CG8249 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 649 (233.5 bits), Expect = 1.2e-63, P = 1.2e-63
Identities = 161/493 (32%), Positives = 255/493 (51%)
Query: 73 RLLRATKAGGQK--VSLSLTLAVFANLGNVNTGMVFGFSAAATSQLISRDSPYRITSDES 130
RLL+ G Q V + + AN+G +TGM A QL P + ++
Sbjct: 28 RLLKTPPPGEQTRAVRRQVIAVILANVGVFSTGMTLAMPTATLHQLKDTTEPVHLNDSQA 87
Query: 131 TWIASLSAIGTMVGCVLGGYMMDLVGRKMTLIITEVPTILGWALIALAPSLPSSILPW-I 189
+W AS++A+ +G +L G+++D +GRK +LI+ V IL W L+A + W +
Sbjct: 88 SWFASVNALSAPIGGLLSGFLLDRIGRKKSLIVLNVLIILAWILLATPSESDQNAFFWQL 147
Query: 190 FTGRILTGLGSGMVGAPSRIYTAECSQPHLRGMLSSLASFGVSLGVLFEYSLGAFLSWD- 248
R + G+G G+ AP +Y AE S P RG L S V+ G+ Y +G + D
Sbjct: 148 IVSRFMLGVGMGLASAPPGVYAAEISVPKTRGSLILGTSISVAGGITILYGIGYCIRDDF 207
Query: 249 -TVAAISTIIPVLSIIAGCLMPESPSWLLSQGRKDACRNSLRRLRA-NNYDVEKEVQGLY 306
+A I +++++ +PES WLLS+ R + SL R N D Q L
Sbjct: 208 RLIALICCGYQLVALLCVLPLPESHCWLLSKKRVTEAKRSLNYFRGFNKSDEITHPQVLE 267
Query: 307 EFSKRQETQKSRN--FKETL-AAIVEPACLKPFVILMLYFLIYQFSGVNPVTFYAVNIFK 363
EF Q++ + RN KE+ + EP KP VILM F Q +G+ V +AV I +
Sbjct: 268 EFQLLQKSLQQRNTAVKESFWRNLHEPEVYKPLVILMSLFAFQQLTGIFVVIVFAVQISQ 327
Query: 364 DAGAHVNNNLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFAT 423
+AG ++ + AV++G+ RLI T +++ GRR IS++G V M ++ A
Sbjct: 328 EAGIEIDPFMCAVLIGLARLITTCPMGYILEWWGRRRAGIISTLGMSVCM-----FLLAG 382
Query: 424 KDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCAC 483
+ + V YLPV+ ++ F ST+G +P+ MI E++P KVRG GLT
Sbjct: 383 HS---QIEILKEVPYLPVVAIVGFIVLSTLGLYTLPFFMISELFPQKVRGPASGLTVAVG 439
Query: 484 HFFIFLTVKSYNMFQTHLTKEGTFLMYGCISLLGTIFFYVYLPETKNKTLQEIEEQF-AG 542
F F+ +K+Y + +L F+++G ++L IF Y+ LPET+ +TL EIEEQF +G
Sbjct: 440 MFISFVVLKTYPGIKEYLGMSNCFIIFGVMALFALIFVYLALPETRRRTLLEIEEQFRSG 499
Query: 543 KSK-KHHSEIYVK 554
+SK ++ +++ +K
Sbjct: 500 RSKSQNQADVEMK 512
|
|
| UNIPROTKB|A9ZSY2 Tret1 "Facilitated trehalose transporter Tret1" [Apis mellifera ligustica (taxid:7469)] | Back alignment and assigned GO terms |
|---|
Score = 649 (233.5 bits), Expect = 1.2e-63, P = 1.2e-63
Identities = 145/473 (30%), Positives = 256/473 (54%)
Query: 90 TLAVFANLGNVNTGMVFGFSAAATSQ-LIS-RDSP---YRITSDESTWIASLSAIGTMVG 144
T+ + A L ++ G+S++ TS L+S RD+ + +T D + WI S+ + ++G
Sbjct: 40 TMQLLAALAVSMASLMIGYSSSYTSPALVSMRDNTTATFEVTMDMAMWIGSIMPLSALIG 99
Query: 145 CVLGGYMMDLVGRKMTLIITEVPTILGWALIALAPSLPSSILPWIFTGRILTGLGSGMVG 204
++GG ++ +GR+ T++ T +P + GW IALA ++ I GR + G G+
Sbjct: 100 GIIGGPCIEYIGRRNTILSTALPFLAGWLFIALATNVAM-----ILVGRSICGFCVGVAS 154
Query: 205 APSRIYTAECSQPHLRGMLSSLAS-FGVSLGVLFEYSLGAFLSWDTVAAISTIIPVLSII 263
+Y E QP +RG L L + FG S G+L ++ G +L+W +A + IP++ +I
Sbjct: 155 LSLPVYLGESIQPEVRGSLGLLPTVFGNS-GILMCFTAGMYLAWRNLALLGACIPIIFLI 213
Query: 264 AGCLMPESPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQGLYEFSKRQETQKSRNFKET 323
L+PE+P W +S+G+ R SL+ LR D+ +E+ + + E +
Sbjct: 214 LMFLIPETPRWYISKGKIKEARKSLQWLRGKTADISEELDSIQKMHIESERIATEG---A 270
Query: 324 LAAIVEPACLKP-FVILMLYFLIYQFSGVNPVTFYAVNIFKDAGAHVNNNLAAVIMGIVR 382
L + +KP F+ L L F QFSG+N V FY V IFKD+G+ V+ NL+ +I+G+V
Sbjct: 271 LIELFRKNHIKPVFISLGLMFF-QQFSGINAVIFYTVQIFKDSGSTVDENLSTIIVGLVN 329
Query: 383 LIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVL 442
I T + +++ ++GR+ L +ISSI +++ G + F K+ F ++P++
Sbjct: 330 FISTFVAAMIIDRLGRKMLLYISSILMCITLFTFGTF-FYVKELMDVTAF----GWIPLM 384
Query: 443 MLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLT 502
L+ + + G+ +PW+M+GE+ P K+RG + T F+ K+Y H+
Sbjct: 385 SLIVYVIGFSFGFGPIPWLMMGEILPVKIRGTAASVATAFNWSCTFVVTKTYEDLVLHIG 444
Query: 503 KEGTFLMYGCISLLGTIFFYVYLPETKNKTLQEIEEQFAGKSKKHHSEIYVKP 555
GTF ++G + + IF + +PET+ ++L+EIE +FAG ++ + +KP
Sbjct: 445 PYGTFWLFGTLVAVAFIFVIICVPETRGRSLEEIERRFAGPVRRTSAIANLKP 497
|
|
| UNIPROTKB|B4HNS1 Tret1-2 "Facilitated trehalose transporter Tret1-2 homolog" [Drosophila sechellia (taxid:7238)] | Back alignment and assigned GO terms |
|---|
Score = 648 (233.2 bits), Expect = 1.6e-63, P = 1.6e-63
Identities = 142/469 (30%), Positives = 254/469 (54%)
Query: 80 AGGQKVSLSLTLAVFANLGNVNTGMVFGFSAAATSQ-LISRD----SPYRITSDESTWIA 134
A G K + + + V A L +V GF +A TS L+S + + +T D +W+
Sbjct: 17 AEGTKANFTFS-QVLAALSVSLCSLVVGFVSAYTSPALVSMTDRTITSFEVTKDAGSWVG 75
Query: 135 SLSAIGTMVGCVLGGYMMDLVGRKMTLIITEVPTILGWALIALAPSLPSSILPWIFTGRI 194
+ + + G + GG +++ +GR+ T++ T VP I+ LIA A ++ I+ I GR
Sbjct: 76 GIMPLAALAGGITGGPLIEYLGRRNTILATAVPFIVSSLLIACAVNV---IM--ILCGRF 130
Query: 195 LTGLGSGMVGAPSRIYTAECSQPHLRGMLSSLASFGVSLGVLFEYSLGAFLSWDTVAAIS 254
LTG G+ +Y E QP +RG L L + ++G+L Y G+F++W +A +
Sbjct: 131 LTGFCVGIASLSLPVYLGETLQPEVRGTLGLLPTALGNIGILVCYVAGSFMNWSILAFLG 190
Query: 255 TIIPVLSIIAGCLMPESPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQGLYEFSKRQET 314
+PV +I ++PE+P W +++G+++ R +L+ LR DVE E++ L + ++
Sbjct: 191 AALPVPFLILMIIIPETPRWFVNRGQEERARKALKWLRGKEADVEPELKDLMQSQAEADS 250
Query: 315 QKSRNFKETLAAIVEPACLKPFVILMLYFLIYQFSGVNPVTFYAVNIFKDAGAHVNNNLA 374
Q +RN T + + LKP I + QFSG+N V FY V IFKDAG+ +++NL
Sbjct: 251 QATRN---TCLELFKRINLKPLSISLGLMFFQQFSGINAVIFYTVQIFKDAGSTIDSNLC 307
Query: 375 AVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPA 434
+I+GIV T I++ ++GR+ L ++S I ++++ LG + + K P+ +
Sbjct: 308 TIIVGIVNFFATFMGIILIDRLGRKILLYVSDIAMILTLSILGGFFYC-KAHGPDV---S 363
Query: 435 FVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSY 494
+ +LP+ + + ++G+ +PW+M+GE+ P K+RG + T F F+ K++
Sbjct: 364 HLGWLPLSCFVIYILGFSLGFGPIPWLMMGEILPAKIRGPAASVVTAFNWFCTFVVTKTF 423
Query: 495 NMFQTHLTKEGTFLMYGCISLLGTIFFYVYLPETKNKTLQEIEEQFAGK 543
+ G F ++G + ++G F +Y+PET+ K+L+EIE + G+
Sbjct: 424 QDLTVAMGPHGAFWLFGVVCIVGLFFVIIYVPETRGKSLEEIERKMMGR 472
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 587 | |||
| pfam00083 | 449 | pfam00083, Sugar_tr, Sugar (and other) transporter | 2e-53 | |
| TIGR00879 | 481 | TIGR00879, SP, MFS transporter, sugar porter (SP) | 2e-53 | |
| PRK10077 | 479 | PRK10077, xylE, D-xylose transporter XylE; Provisi | 9e-42 | |
| TIGR00898 | 505 | TIGR00898, 2A0119, cation transport protein | 7e-18 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 2e-13 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 1e-12 | |
| TIGR00895 | 398 | TIGR00895, 2A0115, benzoate transport | 2e-10 | |
| TIGR00891 | 405 | TIGR00891, 2A0112, putative sialic acid transporte | 5e-09 | |
| TIGR00887 | 502 | TIGR00887, 2A0109, phosphate:H+ symporter | 6e-08 | |
| PRK11551 | 406 | PRK11551, PRK11551, putative 3-hydroxyphenylpropio | 1e-07 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 1e-06 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 2e-06 | |
| TIGR01299 | 742 | TIGR01299, synapt_SV2, synaptic vesicle protein SV | 5e-06 | |
| TIGR00880 | 141 | TIGR00880, 2_A_01_02, Multidrug resistance protein | 1e-05 | |
| TIGR00883 | 394 | TIGR00883, 2A0106, metabolite-proton symporter | 2e-05 | |
| COG2814 | 394 | COG2814, AraJ, Arabinose efflux permease [Carbohyd | 1e-04 | |
| PRK15075 | 434 | PRK15075, PRK15075, citrate-proton symporter; Prov | 0.004 |
| >gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter | Back alignment and domain information |
|---|
Score = 188 bits (479), Expect = 2e-53
Identities = 109/451 (24%), Positives = 208/451 (46%), Gaps = 27/451 (5%)
Query: 101 NTGMVFGFSAAATSQ----LISRDSPYRITSDESTWIASLSAIGTMVGCVLGGYMMDLVG 156
+TG++ F ++ ++ S I S+ ++G ++G + G + D G
Sbjct: 15 DTGVIGAFLTLIKFFKRFGALTSIGACAASTVLSGLIVSIFSVGCLIGSLFAGKLGDRFG 74
Query: 157 RKMTLIITEVPTILGWALIALAPSLPSSILPWIFTGRILTGLGSGMVGAPSRIYTAECSQ 216
RK +L+I V ++G L A +L GR++ GLG G + +Y +E +
Sbjct: 75 RKKSLLIGNVLFVIGALLQGFAKGKSFYML---IVGRVIVGLGVGGISVLVPMYISEIAP 131
Query: 217 PHLRGMLSSLASFGVSLGVLFEYSLGAFLS-------WDTVAAISTIIPVLSIIAGCLMP 269
LRG L SL G++ G+L +G L+ W + + +L +I +P
Sbjct: 132 KKLRGALGSLYQLGITFGILVAAIIGLGLNKYSNSDGWRIPLGLQFVPAILLLIGLLFLP 191
Query: 270 ESPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQGLYEFSKRQETQKSRNFKETLAAIVE 329
ESP WL+ +G+ + R L +LR DV++E+Q + +R + ++ E
Sbjct: 192 ESPRWLVLKGKLEEARAVLAKLR-GVSDVDQEIQEEKDSLERSVEAEKASWLELFRGKTV 250
Query: 330 PACLKPFVILMLYFLIYQFSGVNPVTFYAVNIFKDAGAHVNNNLAAVIMGIVRLIFTIAS 389
+ ++ ++ + Q +G+N + +Y+ IF+ G ++ L +I+G+V +FT +
Sbjct: 251 R---QRLLMGVMLQIFQQLTGINAIFYYSPTIFETLGL-SDSLLVTIIVGVVNFVFTFIA 306
Query: 390 CIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTA 449
++ + GRR L + + G + LG+ + + ++ ++ F A
Sbjct: 307 IFLVDRFGRRPLLLLGAAGMAICFLVLGVALLGVAK-------SKGAGIVAIVFILLFIA 359
Query: 450 ASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLTKEGTFLM 509
+G+ VPWV++ E++P VR + T A FL + T FL+
Sbjct: 360 FFALGWGPVPWVIVSELFPLGVRPKAMAIATAANWLANFLIGFLF-PIITGAIGGYVFLV 418
Query: 510 YGCISLLGTIFFYVYLPETKNKTLQEIEEQF 540
+ + +L +F + ++PETK +TL+EI+E F
Sbjct: 419 FAGLLVLFILFVFFFVPETKGRTLEEIDELF 449
|
Length = 449 |
| >gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Score = 189 bits (481), Expect = 2e-53
Identities = 110/421 (26%), Positives = 201/421 (47%), Gaps = 18/421 (4%)
Query: 126 TSDESTWIASLSAIGTMVGCVLGGYMMDLVGRKMTLIITEVPTILGWALIALAPSLPSSI 185
+S + S+ +G +G + G++ D GRK +L+I + ++G L+ LA S
Sbjct: 69 SSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSV- 127
Query: 186 LPWIFTGRILTGLGSGMVGAPSRIYTAECSQPHLRGMLSSLASFGVSLGVLFEY------ 239
+ GR+L G+G G+ A +Y +E + LRG L+SL ++ G+L Y
Sbjct: 128 -EMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGK 186
Query: 240 -SLGAFLSWDTVAAISTIIPVLSIIAGCLMPESPSWLLSQGRKDACRNSLRRLRANNYDV 298
SL L W + I L + +PESP WL+ +GR + R SL RLR +
Sbjct: 187 VSLNNTLGWRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTS-GE 245
Query: 299 EKEVQGLYEFSKRQETQKSRNFKETLAAI--VEPACLKPFVILMLYFLIYQFSGVNPVTF 356
+KE+ E + + + R+ + + ++ + + ++ QF+G+N + +
Sbjct: 246 DKELLDELELIDIKRSIEKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMY 305
Query: 357 YAVNIFKDAGAHVNNN-LAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTG 415
Y+ IF++AG ++ L ++I+G V FT + ++ + GRR L I + G + +
Sbjct: 306 YSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFV 365
Query: 416 LGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIV 475
LG+ + + ++ ++ F A +G+ VPWV++ E++P +R
Sbjct: 366 LGILGASF-----VTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKG 420
Query: 476 GGLTTCACHFFIFLTVKSYNMFQTHLTKEGTFLMYGCISLLGTIFFYVYLPETKNKTLQE 535
+ A F+ + + G F+ +G +++LG IF Y +LPETK +TL+E
Sbjct: 421 ISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPETKGRTLEE 480
Query: 536 I 536
I
Sbjct: 481 I 481
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481 |
| >gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Score = 156 bits (397), Expect = 9e-42
Identities = 120/496 (24%), Positives = 218/496 (43%), Gaps = 64/496 (12%)
Query: 87 LSLTLAVFANLGNVNTGMVFGFSAAATSQLISRDSPYRITSDESTWIASLSAIG-----T 141
S+TL A LG G++FG+ A S + + + + A+ S +G
Sbjct: 11 FSITLV--ATLG----GLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASA 64
Query: 142 MVGCVLG----GYMMDLVGRKMTLIITEVPTILGWALIALAPSL-------PSSILPWIF 190
++GC++G GY + GR+ +L I V + AL + P ++ F
Sbjct: 65 LIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFIS-ALGSAWPEFGFTSIGPDNTGYVPEF 123
Query: 191 TG-RILTGLGSGMVGAPSRIYTAECSQPHLRGMLSSLASFGVSLGVLFEYSLGAFLS--- 246
RI+ G+G G+ S +Y AE + H+RG L S F + G L Y + F++
Sbjct: 124 VIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSG 183
Query: 247 ---------WDTVAAISTIIPVLSIIAGCLMPESPSWLLSQGRKDACRNSLRRLRANNYD 297
W + A I +L ++ +PE+P +L+S+G+++ LR++ N
Sbjct: 184 DASWLNTDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKIMGNT-L 242
Query: 298 VEKEVQGLYEFSKRQETQKSRNFKETLAAIVEPACLKPFVILMLYFLIYQFSGVNPVTFY 357
+ +Q + + + IV I ++ + QF G+N V +Y
Sbjct: 243 ATQALQEIKHSLDHGRKTGGKLLMFGVGVIV---------IGVMLSVFQQFVGINVVLYY 293
Query: 358 AVNIFKDAGAHVNNNL-AAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGL 416
A IFK GA + L +I+G++ L FT+ + + + K GR+ L I ++G + M L
Sbjct: 294 APEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSL 353
Query: 417 GLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVG 476
G + + +L ++ + AA + + V WV++ E++P +RG
Sbjct: 354 GTAFYT-----------QAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKAL 402
Query: 477 GLTTCACHFFIFLTVKSYNMFQTHLTKEGTF------LMYGCISLLGTIFFYVYLPETKN 530
+ A + ++ M + F +YGC+ +L +F + ++PETK
Sbjct: 403 AIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKG 462
Query: 531 KTLQEIEEQFAGKSKK 546
KTL+E+E + ++KK
Sbjct: 463 KTLEEMEALWEPETKK 478
|
Length = 479 |
| >gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein | Back alignment and domain information |
|---|
Score = 86.2 bits (214), Expect = 7e-18
Identities = 97/410 (23%), Positives = 168/410 (40%), Gaps = 48/410 (11%)
Query: 135 SLSAIGTMVGCVLGGYMMDLVGRKMTLIITE-VPTILGWALIALAPSLPSSILPWIFTGR 193
S +G ++G + GY+ D GRK L+++ V + G L A +P+ R
Sbjct: 134 SCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGV-LTAFSPNYT-----VFLVFR 187
Query: 194 ILTGLGSGMVGAPSRIYTAECSQPHLRGMLSSLASFGVSLGVLFEYSLGAFL-SWDTVAA 252
+L G+G G + + + E R ++ +L SLG++ + F+ W +
Sbjct: 188 LLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPDWRWLQL 247
Query: 253 ISTIIPVLSIIAGCLMPESPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQGLYEFSKRQ 312
++ L + +PESP WL+SQGR + L+R+ N +K + S +
Sbjct: 248 AVSLPTFLFFLLSWFVPESPRWLISQGRIEEALKILQRIAKING--KKLPAEVLSLSLEK 305
Query: 313 ETQKSRNFKETLAAIVEPACLKPFVILMLYFLIYQFSGVNPVTFYAVNIFKDAGAHVNNN 372
+ S+ L P K + LM+ + FS +Y + + N
Sbjct: 306 DLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWFTTAFS------YYGLVLDL-GNLGGNIY 358
Query: 373 LAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKF 432
L I G+V L + + +++ ++GRR S + GV+ L L +F D
Sbjct: 359 LDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVA---LLLLLFVPVD------L 409
Query: 433 PAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACH-------F 485
+ L VL T+A + YL E+YPT VR + G+ + F
Sbjct: 410 YFLRTALAVLGKFGITSAFQMVYLYTA-----ELYPTVVRNLGVGVCSTMARVGSIISPF 464
Query: 486 FIFLTVKSYNMFQTHLTKEGTFLMYGCISLLGTIFFYVYLPETKNKTLQE 535
++L K + +++G ++LL I ++LPETK L E
Sbjct: 465 LVYLGEKWLFL---------PLVLFGGLALLAGI-LTLFLPETKGVPLPE 504
|
[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 72.0 bits (177), Expect = 2e-13
Identities = 49/177 (27%), Positives = 75/177 (42%), Gaps = 12/177 (6%)
Query: 97 LGNVNTGMVFGFSAAATSQLISRDSPYRITSDESTWIASLSAIGTMVGCVLGGYMMDLVG 156
LG +G+ G + A L +++ ++ I S ++G +G +L GY+ D G
Sbjct: 6 LGFFLSGLDRGLLSPALPLLAEDLG---LSASQAGLIVSAFSLGYALGSLLAGYLSDRFG 62
Query: 157 RKMTLIITEVPTILGWALIALAPSLPSSILPWIFTGRILTGLGSGMVGAPSRIYTAECSQ 216
R+ L++ + LG L+A A SL + GR L GLG G + + AE
Sbjct: 63 RRRVLLLGLLLFALGSLLLAFASSLW-----LLLVGRFLLGLGGGALYPAAAALIAEWFP 117
Query: 217 PHLRGMLSSLASFGVSLGVLFEYSLGAFL----SWDTVAAISTIIPVLSIIAGCLMP 269
P RG L S G LG L LG L W + I I+ +L + +
Sbjct: 118 PKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLFLL 174
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 69.4 bits (170), Expect = 1e-12
Identities = 76/399 (19%), Positives = 129/399 (32%), Gaps = 63/399 (15%)
Query: 97 LGNVNTGMVFGFSAAATSQLISRDSPYRITSDESTWIASLSAIGTMVGCVLGGYMMDLVG 156
L G+ A ++ D I+ E + + ++G + L G + D G
Sbjct: 3 LAAFLAGLGRSLLGPALPLYLAED--LGISPTEIGLLLTAFSLGYALAQPLAGRLSDRFG 60
Query: 157 RKMTLIITEVPTILGWALIALAPSLPSSILPWIFTGRILTGLGSGMVGAPSRIYTAECSQ 216
R+ L+I + LG L+ A SL + R+L GLG G + + A+
Sbjct: 61 RRRVLLIGLLLFALGLLLLLFASSLW-----LLLVLRVLQGLGGGALFPAAAALIADWFP 115
Query: 217 PHLRGMLSSLASFGVSLGVLFEYSLGAFL----SWDTVAAISTIIPVLS-IIAGCLMPES 271
P RG L S G LG LG L W I I+ +L+ ++A L+P
Sbjct: 116 PEERGRALGLLSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILALLAAVLAALLLPRP 175
Query: 272 PSWLLSQGRKDACRNSLRRLRANNYDVEKEVQGLYEFSKRQETQKSRNFKETLAAIVEPA 331
P + K
Sbjct: 176 P-------------------------------------PESKRPKPAEEAPAPLVPAWKL 198
Query: 332 CLKPFVILMLYFLIYQFSGVNPVTFYAVNIFKDAG-AHVNNNLAAVIMGIVRLIFTIASC 390
L+ V+ +L L+ + Y + G + + L + G++ I +
Sbjct: 199 LLRDPVLWLLLALLLFGFAFFALLTYLPLYQEVLGLSALLAGLLLGLAGLLGAIGRLLLG 258
Query: 391 IMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAA 450
+ ++GRR ++ + ++ GL L W L L+L+ F A
Sbjct: 259 RLSDRLGRRRRLLLALLLLILAALGLALLSLTESSLW----------LLVALLLLGFGAG 308
Query: 451 STIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFL 489
L ++ ++ P + RG GL A L
Sbjct: 309 LVFPAL---NALVSDLAPKEERGTASGLYNTAGSLGGAL 344
|
Length = 346 |
| >gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport | Back alignment and domain information |
|---|
Score = 62.4 bits (152), Expect = 2e-10
Identities = 75/389 (19%), Positives = 140/389 (35%), Gaps = 68/389 (17%)
Query: 104 MVFGFSAAATSQLISRDSPYRITSDESTWIASLSAIGTMVGCVLGGYMMDLVGRKMTLII 163
GF+A A S + + + ++ S IG G + G + D +GR+ L+
Sbjct: 34 AAMGFAAPAISA------EWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRRRVLLW 87
Query: 164 TEVPTILGWALIALAPSLPSSILPWIFTGRILTGLGSGMVGAPSRIYTAECSQPHLRGML 223
+ + + L ALA ++ + I R L GLG G + +E + RG
Sbjct: 88 SILLFSVFTLLCALATNVTQLL---IL--RFLAGLGLGGLMPNLNALVSEYAPKRFRGTA 142
Query: 224 SSLASFGVSLGVLFEYSLGAFLS--------WDTVAAISTIIPVLSIIAGCLM---PESP 272
L G +G ++G FL+ W ++ + I P+ ++ LM PES
Sbjct: 143 VGLMFCGYPIG----AAVGGFLAGWLIPVFGWRSLFYVGGIAPL--LLLLLLMRFLPESI 196
Query: 273 SWLLSQGRKDACRNSLRRLRANNYDVEKEVQGLYEFSKRQETQKSRNFKETLAAIVEPAC 332
+L+S+ R + A ++ E Q K + K + A+ +
Sbjct: 197 DFLVSKRP----ETVRRIVNAIAPQMQAEAQSALPEQKATQGTK----RSVFKALFQGKT 248
Query: 333 LKPFVILMLYFLIYQFSGVNPVTFYAVNIF-----KDAGAHVNNNLAAVIMGIVR---LI 384
+ V+L L + + V Y + + + G + +LAA + +I
Sbjct: 249 ARITVLLWLLY------FMLLVGVYFLTNWLPKLMVELGF--SLSLAATGGALFNFGGVI 300
Query: 385 FTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLML 444
+I + ++G R + +G V +G +F+ +L+
Sbjct: 301 GSIIFGWLADRLGPRVTALLLLLG-AVFAVLVGSTLFSPTLL--------------LLLG 345
Query: 445 MTFTAASTIGYLVVPWVMIGEVYPTKVRG 473
G + +M YPT +R
Sbjct: 346 AIAGFFVNGGQSGLYALM-ALFYPTAIRA 373
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398 |
| >gnl|CDD|233172 TIGR00891, 2A0112, putative sialic acid transporter | Back alignment and domain information |
|---|
Score = 58.4 bits (141), Expect = 5e-09
Identities = 68/366 (18%), Positives = 130/366 (35%), Gaps = 47/366 (12%)
Query: 123 YRITSDESTWIASLSAIGTMVGCVLGGYMMDLVGRKMTLIITEVPTILGWALIALAPSLP 182
+ +T+ ++ + S + I G ++ G D GR++ ++ + V G AP
Sbjct: 42 FGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGFAPGYI 101
Query: 183 SSILPWIFTGRILTGLGSGMVGAPSRIYTAECSQPHLRGMLSSLASFGVSLGVLFE---Y 239
+ +F R++ G+G G S Y E HLR S L G ++G + Y
Sbjct: 102 T-----MFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVY 156
Query: 240 SLGAF---LSWDTVAAISTIIPVLSIIAGCLMPESPSWLLSQGRKDACRNSLRRLRANNY 296
SL W + IS + + ++ +PE+ W K R + L
Sbjct: 157 SLVVPVWGDGWRALFFISILPIIFALWLRKNIPEAEDWKEKHAGKALVRTMVDILYGG-- 214
Query: 297 DVEKEVQGLYEFSKRQETQKSRNFKETLAAIVEPACLKPFVILMLYFLIYQFSGVNPVTF 356
E + + AA+V+ A + + L L+ + +
Sbjct: 215 ----------------EHRIANIVMTLAAAMVQSAGKRWPTFVYLVVLVLFANLYSHPIQ 258
Query: 357 YAVNIFKDAGAHVNNNLAAVIMGIVRLIFTIASCI---MMKKMGRRSLTFISSIGCGVSM 413
+ + A ++ + A I+ + + C+ + +GRR + C +
Sbjct: 259 DLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRR-----KAYVCSLLA 313
Query: 414 TGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRG 473
L + P + A V+ L + + I + ++P +GE +PT R
Sbjct: 314 GQLLII--------PVFAIGANVAVLGLGLFFQQMLVQGI-WGILP-KHLGEYFPTDQRA 363
Query: 474 IVGGLT 479
G T
Sbjct: 364 AGLGFT 369
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 405 |
| >gnl|CDD|129965 TIGR00887, 2A0109, phosphate:H+ symporter | Back alignment and domain information |
|---|
Score = 55.1 bits (133), Expect = 6e-08
Identities = 102/468 (21%), Positives = 171/468 (36%), Gaps = 101/468 (21%)
Query: 137 SAIGTMVGCVLGGYMMDLVGRK----MTLIITEVPTILGWALIALAPSLPSSILPWIFTG 192
++IGT+ G + G++ D +GRK M LII + T+ A S P S++ +
Sbjct: 65 ASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATV---ASGLSPGSSPKSVMATLCFW 121
Query: 193 RILTGLGSGMVGAPSRIYTAECSQPHLRGMLSS----------LASFGVSLGVL--FEYS 240
R G+G G S I T+E + RG + + LA V+L VL F++S
Sbjct: 122 RFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHS 181
Query: 241 L-----GAFLSWDTVAAISTIIPVL---SIIAGCL-------MPESPSWLLSQGRKDACR 285
L A + V A+ + +L + L +PE+P + +
Sbjct: 182 LEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRYTADVAKD---- 237
Query: 286 NSLRRLRANNYDVEKEVQGLYEFSKRQETQKSRNFKETLAAIVEPACLKPF------VIL 339
+ D+ +Q E ++ E +K+ E A F +L
Sbjct: 238 -----VEQAASDMSAVLQVKIE-AEPDEVEKASTAVEVPKASWSDFFTHFFKWRHGKHLL 291
Query: 340 ---MLYFLIYQFSGVNPVTFYAVN-----IFKDAG---AHVNNNLAAVIMGIVR--LIFT 386
+FL+ + FY VN I G NN + LI
Sbjct: 292 GTAGSWFLL-------DIAFYGVNLNQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIA 344
Query: 387 IASCI--------MMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSY 438
+A + ++ +GR+ + + V LG FA + F Y
Sbjct: 345 LAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLG---FAYNH-LSTHGF--LAIY 398
Query: 439 LPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHF------FIFLTVK 492
+ F +T +VP GEV+PT+ R G++ + F FL +
Sbjct: 399 VLAQFFANFGPNATT--FIVP----GEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLA 452
Query: 493 SYN----MFQTHLTKEGTFLMYGCISLLGTIFFYVYLPETKNKTLQEI 536
+ + T + ++ LG I F + +PETK K+L+E+
Sbjct: 453 QHGDPTKGYPTGIWMGHVLEIFALFMFLG-ILFTLLIPETKGKSLEEL 499
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Anions]. Length = 502 |
| >gnl|CDD|236927 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 1e-07
Identities = 49/167 (29%), Positives = 77/167 (46%), Gaps = 14/167 (8%)
Query: 132 WIASLSAIGTMVGCVLGGYMMDLVGRKMTLIITEVPTILGWALIALAPSLPSSILPWIFT 191
W S +G + G +LGG + D +GRK LI+ ++ + L +LA + P +
Sbjct: 54 WAFSAGILGLLPGALLGGRLADRIGRKRILIV----SVALFGLFSLATAQAWD-FPSLLV 108
Query: 192 GRILTGLGSGMVGA-PSRI-YTAECSQPHLRGMLSSLASFGVSLGVLFEYSLGAFLS--- 246
R+LTG+G G GA P+ I T+E P LRG SL GV G +G +
Sbjct: 109 ARLLTGVGLG--GALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDA 166
Query: 247 -WDTVAAISTIIPVLSI-IAGCLMPESPSWLLSQGRKDACRNSLRRL 291
W + + + P+L + + +PES ++ + G LR L
Sbjct: 167 AWRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAGKQRAPVLRAL 213
|
Length = 406 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 1e-06
Identities = 35/203 (17%), Positives = 69/203 (33%), Gaps = 18/203 (8%)
Query: 324 LAAIVEPACLKPFVILMLYFLIYQFSGVNPVTFYAVNIFKDAG--AHVNNNLAAVIMGIV 381
L A++ L+ ++L L F + F G + Y ++ + L + G+
Sbjct: 165 LLALLLLFLLRLLLLLALAFFLLSF-GYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLG 223
Query: 382 RLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPV 441
++ + ++ ++GRR L + IG ++ GL L A S +
Sbjct: 224 GILGALLGGLLSDRLGRRRLLLL--IGLLLAALGLLLLALAP-------------SLALL 268
Query: 442 LMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHL 501
L+ + + E+ P + RG GL L +
Sbjct: 269 LVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTG 328
Query: 502 TKEGTFLMYGCISLLGTIFFYVY 524
G FL+ ++LL + +
Sbjct: 329 GYGGVFLILAALALLAALLLLLL 351
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 2e-06
Identities = 39/174 (22%), Positives = 69/174 (39%), Gaps = 8/174 (4%)
Query: 100 VNTGMVFGFSAAATSQLISRDSPYRITSDESTWIASLSAIGTMVGCVLGGYMMDLVGRKM 159
+ FG+ T + +++ E+ + SL +G ++G +LGG + D +GR+
Sbjct: 183 AFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRR 242
Query: 160 TLIITEVPTILGWALIALAPSLPSSILPWIFTGRILTGLGSGMVGAPSRIYTAECSQPHL 219
L++ L A + L + L + +L G G G +E + P
Sbjct: 243 LLLLIG----LLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTLASELAPPEA 298
Query: 220 RGMLSSLASFGVSLGVLFEYSLGAFL----SWDTVAAISTIIPVLSIIAGCLMP 269
RG S L + SLG L L + V I + +L+ + L+P
Sbjct: 299 RGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLLLLP 352
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Score = 49.2 bits (117), Expect = 5e-06
Identities = 47/188 (25%), Positives = 69/188 (36%), Gaps = 22/188 (11%)
Query: 125 ITSDESTWIASLSAIGTMVGCVLGGYMMDLVGRKMTLIITEVPTILGWALIALAPSLPSS 184
I + + +G MVG G + D +GRK L+I A S
Sbjct: 199 IPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVN----GFFAFFSSFVQG 254
Query: 185 ILPWIFTGRILTGLGSGMVGAPSRIYTAECSQPHLRG-MLSSLASFGVSLGVL------- 236
++F R+L+G G G Y AE RG LS L F + G+
Sbjct: 255 YGFFLFC-RLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWA 313
Query: 237 ------FEYSLGA---FLSWDTVAAISTIIPVLSIIAGCLMPESPSWLLSQGRKDACRNS 287
+ + +G+ F SW + V +I A MPESP + L G+ D
Sbjct: 314 IIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFLENGKHDEAWMI 373
Query: 288 LRRLRANN 295
L+ + N
Sbjct: 374 LKLIHDTN 381
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by PFAM model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. Length = 742 |
| >gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 1e-05
Identities = 36/146 (24%), Positives = 63/146 (43%), Gaps = 10/146 (6%)
Query: 131 TWIASLSAIGTMVGCVLGGYMMDLVGRKMTLIITEVPTILGWALIALAPSLPSSILPWIF 190
+ + A+G ++ L G + D GRK L++ +L A+ AL+ ++ +
Sbjct: 1 GLLLAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITV-----LI 55
Query: 191 TGRILTGLGSGMVGAPSRIYTAECSQPHLRGMLSSLASFGVSLGVLFEYSLGAFLS-WDT 249
R L G G+ A+ P RG+ L S G++LG L LG L+ +
Sbjct: 56 IARFLQGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLG 115
Query: 250 VAAISTIIPVLSIIAG----CLMPES 271
A + +L++ A L+PE+
Sbjct: 116 WRAPFLFLAILALAAFILLAFLLPET 141
|
Length = 141 |
| >gnl|CDD|233168 TIGR00883, 2A0106, metabolite-proton symporter | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 2e-05
Identities = 33/109 (30%), Positives = 52/109 (47%), Gaps = 5/109 (4%)
Query: 143 VGCVLGGYMMDLVGRKMTLIITEVPTILGWALIALAPSLPSSILPW----IFTGRILTGL 198
+G ++ G+ D +GRK TL+IT + +G LI L PS ++I W + R++ G
Sbjct: 50 LGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSY-ATIGIWAPILLLLARLIQGF 108
Query: 199 GSGMVGAPSRIYTAECSQPHLRGMLSSLASFGVSLGVLFEYSLGAFLSW 247
G + +Y AE + P RG S G +G+L LS+
Sbjct: 109 SLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSY 157
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc [Transport and binding proteins, Unknown substrate]. Length = 394 |
| >gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 44.5 bits (106), Expect = 1e-04
Identities = 45/186 (24%), Positives = 71/186 (38%), Gaps = 21/186 (11%)
Query: 87 LSLTLAVFANLGNVNTGMVFGFSAAATSQLISRDSPYRITSDESTWIASLSAIGTMVGCV 146
L+L LA FA G I+ D ++ + + + A+G +G
Sbjct: 16 LALALAAFA------IGTTEFVPVGLLPP-IAAD--LGVSEGAAGQLITAYALGVALGAP 66
Query: 147 LGGYMMDLVGRKMTLIITEVPTILGWALIALAPSLPSSILPWIFTGRILTGLGSGMVGAP 206
L + + R+ L+ I+ L ALAPS +L R L GL G+ +
Sbjct: 67 LLALLTGRLERRRLLLGLLALFIVSNLLSALAPSFAVLLL-----ARALAGLAHGVFWSI 121
Query: 207 SRIYTAECSQPHLRGMLSSLASFGVSLGVLFEYSLGAFLS----WDTVAAISTIIPVLSI 262
+ A P RG +L G++L + LG FL W I VL++
Sbjct: 122 AAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFL---AIAVLAL 178
Query: 263 IAGCLM 268
+A L+
Sbjct: 179 LALLLL 184
|
Length = 394 |
| >gnl|CDD|237902 PRK15075, PRK15075, citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Score = 39.5 bits (93), Expect = 0.004
Identities = 53/181 (29%), Positives = 82/181 (45%), Gaps = 30/181 (16%)
Query: 104 MVFGFSAAATSQ-LISRDSPYRITSDESTWIASLSAIGT---M--VGC-VLGGYMMDLVG 156
+FGF A A ++ + + ++ + + + G M +G VLG Y +D VG
Sbjct: 32 FLFGFYATAIAKTFFPAGNEF------ASLMLTFAVFGAGFLMRPLGAIVLGAY-IDRVG 84
Query: 157 RKMTLIITEVPTILGWALIALAPS-----LPSSILPWIFTGRILTGLGSGM-VGAPSRIY 210
R+ LI+T G LIA P L + +L + GR+L G +G+ +G S +Y
Sbjct: 85 RRKGLIVTLSIMASGTLLIAFVPGYATIGLAAPLL--VLLGRLLQGFSAGVELGGVS-VY 141
Query: 211 TAECSQPHLRGMLSSLASFGVSLGVLFE----YSLGAFLSWDTVAAISTIIPVLSIIAGC 266
AE + P +G +S S + V+F Y L +LS +A IP L GC
Sbjct: 142 LAEIATPGRKGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFL---IGC 198
Query: 267 L 267
L
Sbjct: 199 L 199
|
Length = 434 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 587 | |||
| KOG0569|consensus | 485 | 100.0 | ||
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 100.0 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 100.0 | |
| KOG0254|consensus | 513 | 100.0 | ||
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 100.0 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 100.0 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 100.0 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 100.0 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 100.0 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 100.0 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 100.0 | |
| KOG0253|consensus | 528 | 100.0 | ||
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 100.0 | |
| KOG0252|consensus | 538 | 100.0 | ||
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 100.0 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 100.0 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 100.0 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 100.0 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 100.0 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 100.0 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 100.0 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 100.0 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 100.0 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 100.0 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 100.0 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 100.0 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 100.0 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 100.0 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 100.0 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 100.0 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 100.0 | |
| PRK03699 | 394 | putative transporter; Provisional | 100.0 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 100.0 | |
| KOG0255|consensus | 521 | 100.0 | ||
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 100.0 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 100.0 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 100.0 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 100.0 | |
| PRK12382 | 392 | putative transporter; Provisional | 100.0 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 100.0 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 100.0 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 100.0 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.97 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.97 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.97 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.97 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.97 | |
| KOG1330|consensus | 493 | 99.97 | ||
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.97 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.97 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.97 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.97 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.97 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.97 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.97 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.97 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.97 | |
| KOG2533|consensus | 495 | 99.97 | ||
| KOG2532|consensus | 466 | 99.97 | ||
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.97 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.96 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.96 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.96 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.96 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.96 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.96 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.96 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.96 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.96 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.96 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.95 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.95 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.95 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.95 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.95 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.95 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.95 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.95 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.94 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.94 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.94 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.94 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.94 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.94 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 99.94 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.94 | |
| KOG3764|consensus | 464 | 99.93 | ||
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.93 | |
| KOG2504|consensus | 509 | 99.93 | ||
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.93 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.93 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.93 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.92 | |
| KOG2615|consensus | 451 | 99.92 | ||
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.92 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.91 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 99.91 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.89 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.89 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 99.88 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.87 | |
| KOG4686|consensus | 459 | 99.87 | ||
| KOG2563|consensus | 480 | 99.86 | ||
| PRK09669 | 444 | putative symporter YagG; Provisional | 99.85 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.84 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 99.84 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.83 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 99.82 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 99.81 | |
| PRK11462 | 460 | putative transporter; Provisional | 99.81 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.8 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.8 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 99.76 | |
| KOG2325|consensus | 488 | 99.75 | ||
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.74 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.74 | |
| KOG3626|consensus | 735 | 99.71 | ||
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.62 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 99.61 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 99.57 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.49 | |
| KOG2816|consensus | 463 | 99.49 | ||
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 99.44 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.42 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.41 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.38 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 99.37 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.37 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.36 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 99.35 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.34 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.34 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.34 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.34 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.33 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.33 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.32 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.32 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.32 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.31 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.31 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.29 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.28 | |
| KOG3762|consensus | 618 | 99.27 | ||
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.26 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.26 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.26 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.25 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.25 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.24 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.24 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.24 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.24 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.24 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.24 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.24 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.23 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.23 | |
| KOG1330|consensus | 493 | 99.21 | ||
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.21 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.2 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.2 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.2 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.19 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.19 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.19 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.19 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.18 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.17 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.17 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.17 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.16 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.16 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.16 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.16 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.15 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.15 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.14 | |
| KOG3098|consensus | 461 | 99.14 | ||
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.13 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.13 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.13 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.12 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.1 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.1 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.1 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.09 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.09 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.08 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.05 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.04 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.04 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.04 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.01 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.01 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.01 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.01 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 99.01 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 98.99 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 98.98 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 98.97 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 98.96 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 98.95 | |
| KOG3764|consensus | 464 | 98.93 | ||
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 98.92 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 98.91 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 98.91 | |
| KOG2615|consensus | 451 | 98.91 | ||
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 98.9 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 98.9 | |
| KOG0253|consensus | 528 | 98.88 | ||
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 98.88 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 98.87 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 98.87 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 98.87 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 98.85 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 98.85 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 98.84 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 98.83 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 98.82 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 98.82 | |
| KOG2532|consensus | 466 | 98.79 | ||
| KOG0637|consensus | 498 | 98.79 | ||
| KOG3810|consensus | 433 | 98.79 | ||
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 98.78 | |
| KOG0569|consensus | 485 | 98.78 | ||
| KOG2504|consensus | 509 | 98.77 | ||
| PRK09848 | 448 | glucuronide transporter; Provisional | 98.75 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 98.71 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 98.7 | |
| KOG0255|consensus | 521 | 98.68 | ||
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 98.67 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 98.65 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 98.64 | |
| KOG3574|consensus | 510 | 98.62 | ||
| KOG4686|consensus | 459 | 98.61 | ||
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 98.6 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 98.55 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 98.5 | |
| KOG2533|consensus | 495 | 98.5 | ||
| KOG0254|consensus | 513 | 98.48 | ||
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 98.48 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 98.47 | |
| KOG4332|consensus | 454 | 98.45 | ||
| PRK09669 | 444 | putative symporter YagG; Provisional | 98.45 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 98.45 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 98.45 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 98.4 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 98.4 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 98.39 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 98.38 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 98.36 | |
| KOG2816|consensus | 463 | 98.35 | ||
| KOG2325|consensus | 488 | 98.18 | ||
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 98.18 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 98.16 | |
| KOG1237|consensus | 571 | 98.14 | ||
| KOG0252|consensus | 538 | 98.13 | ||
| KOG3762|consensus | 618 | 98.07 | ||
| PRK11462 | 460 | putative transporter; Provisional | 98.03 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 97.99 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 97.94 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 97.89 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 97.82 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 97.64 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 97.54 | |
| PF07672 | 267 | MFS_Mycoplasma: Mycoplasma MFS transporter; InterP | 97.4 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 97.33 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 97.28 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 97.25 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 97.19 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 97.19 | |
| KOG1479|consensus | 406 | 97.12 | ||
| KOG2563|consensus | 480 | 97.1 | ||
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 97.02 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 96.86 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 96.51 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 96.44 | |
| KOG3626|consensus | 735 | 96.44 | ||
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 96.38 | |
| KOG3098|consensus | 461 | 96.21 | ||
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 96.05 | |
| PF01733 | 309 | Nucleoside_tran: Nucleoside transporter; InterPro: | 95.47 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 95.42 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 95.33 | |
| KOG3097|consensus | 390 | 95.21 | ||
| PRK03612 | 521 | spermidine synthase; Provisional | 94.67 | |
| KOG0637|consensus | 498 | 94.53 | ||
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 93.88 | |
| KOG1237|consensus | 571 | 93.65 | ||
| KOG1479|consensus | 406 | 92.7 | ||
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 92.13 | |
| KOG3880|consensus | 409 | 89.96 | ||
| KOG3880|consensus | 409 | 87.95 | ||
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 86.2 | |
| PF01733 | 309 | Nucleoside_tran: Nucleoside transporter; InterPro: | 85.91 | |
| KOG4332|consensus | 454 | 84.88 | ||
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 81.4 |
| >KOG0569|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-44 Score=350.99 Aligned_cols=442 Identities=27% Similarity=0.442 Sum_probs=373.7
Q ss_pred HHHHHHHHHHhhhhhhccccccHHHHHhhhcC-------CCCCccCcch----hHHHHHHHHHHHHHHHHhHHHhhhccc
Q psy11547 88 SLTLAVFANLGNVNTGMVFGFSAAATSQLISR-------DSPYRITSDE----STWIASLSAIGTMVGCVLGGYMMDLVG 156 (587)
Q Consensus 88 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~s~~~----~g~i~s~~~l~~~i~~~~~g~l~dr~G 156 (587)
.......++++.+-.||..+.+++..+.+.+- .++...++.+ .+.+++++.+|.++|+++.|.++||+|
T Consensus 9 L~~~~~~~~~gsf~~Gy~~~~iNap~~~i~~f~n~t~~~r~g~~~s~~~~~~lwS~~vs~f~iG~~~Gs~~~~~la~~~G 88 (485)
T KOG0569|consen 9 LLLAVIVATLGSFQFGYNIGVVNAPQELIKSFINETLIERYGLPLSDSTLDLLWSLIVSIFFIGGMIGSFSSGLLADRFG 88 (485)
T ss_pred HHHHHHHHHHhchhhhhhheecCchHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 55566666777799999999888776554331 1122345443 467889999999999999999999999
Q ss_pred hhHHHHHhhHHHHHHHHHHHhc---CCCCCCcchhhHHhhhhhhccccccccccceeeeeccCCCcchhHhHHHHHHHHH
Q psy11547 157 RKMTLIITEVPTILGWALIALA---PSLPSSILPWIFTGRILTGLGSGMVGAPSRIYTAECSQPHLRGMLSSLASFGVSL 233 (587)
Q Consensus 157 rr~~l~~~~~~~~i~~~~~~~~---~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~ 233 (587)
||..++++.++..++.++..++ +++. .++++|++.|+..|........|+.|..|++.||....+.+.+..+
T Consensus 89 RK~~l~~~~~l~~~~~~~~~~s~~~~~~e-----~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~ 163 (485)
T KOG0569|consen 89 RKNALLLSNLLAVLAALLMGLSKSAPSFE-----MLILGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVVI 163 (485)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhhHH-----HHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHHH
Confidence 9999999999988888877765 5566 8999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhh------hHHHHHHHHHHHHHHHHHHhcccCCCchHHHh-cCCHHHHHHHHHHHhCCCcchHHHHhhHH
Q psy11547 234 GVLFEYSLGAFL------SWDTVAAISTIIPVLSIIAGCLMPESPSWLLS-QGRKDACRNSLRRLRANNYDVEKEVQGLY 306 (587)
Q Consensus 234 G~~i~~~l~~~l------~wr~~f~~~~~~~~~~~~~~~~~~esp~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (587)
|.+++..++.-- .|++.+.+..+++++.+++..++||||+|+.. +++.++|++.++.++..+++.....+..+
T Consensus 164 g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~l~~~PESPk~Ll~~k~~~~~A~~sl~~y~G~~~~~~~~e~~~~ 243 (485)
T KOG0569|consen 164 GILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLALLPFLPESPKYLLIKKGDEEEARKALKFYRGKEDVEAEIEEMLR 243 (485)
T ss_pred HHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHcCCHHHHHHHHHHHhCCCcchhHHHHHHH
Confidence 999998776543 79999999999999999999999999999998 89999999999999988754443333333
Q ss_pred HHHHHHHHHhhhhhhHhHHhhhcCCchHHHHHHHHHHHHHHhccchhhHhcHHHHHHhcCCC-cchHHHHHHHHHHHHHH
Q psy11547 307 EFSKRQETQKSRNFKETLAAIVEPACLKPFVILMLYFLIYQFSGVNPVTFYAVNIFKDAGAH-VNNNLAAVIMGIVRLIF 385 (587)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~i~ 385 (587)
+.++++. .+.+..+.++.++++..++...+.+.+.++.++.+.+...+|...++++.|++ ..+.+.....++..++.
T Consensus 244 e~~~~~~--~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~ 321 (485)
T KOG0569|consen 244 EIEEEEL--EKKKQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLS 321 (485)
T ss_pred HHHHhcc--ccccCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 2222211 22355678899999999999999999999999999999999999999999998 56678888999999999
Q ss_pred HHhHHHhhcccCCchhhHhhhHHHHHHHHHHHHHHHhccCCCCCCCcCccchhHHHHHHHHHHHHHhccccccceeeeec
Q psy11547 386 TIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGE 465 (587)
Q Consensus 386 ~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (587)
++++.++.||+|||++++.+..++.+..+++..........+ ....+..+...+.+...+..|.+|+.+.+.+|
T Consensus 322 t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~------~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aE 395 (485)
T KOG0569|consen 322 TLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFG------SWLSYLCIAAIFLFIISFAIGPGPIPWFIGAE 395 (485)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhh------hHHHHHHHHHHHHHHHhhhcCCCchhHHHHHH
Confidence 999999999999999999999999888888877655521110 01233456777888889999999999999999
Q ss_pred cCCCCchhhHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhHHHHHHHHHHHHHHHhheecccCCCCCHHHHHHHHhcC
Q psy11547 466 VYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLTKEGTFLMYGCISLLGTIFFYVYLPETKNKTLQEIEEQFAGK 543 (587)
Q Consensus 466 ~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 543 (587)
++|++.|..+.++...++++..++....+..+.+..|. ..|+.+.+.+++..++.++.+||||+|+.+|+.++.+++
T Consensus 396 Lf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~~i~~~~~lPETkgr~~~eI~~~~~~~ 472 (485)
T KOG0569|consen 396 LFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAIFLIYLYRYLPETKGRTPYEIIEELEKR 472 (485)
T ss_pred hCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHhC
Confidence 99999999999999999999999999999999999997 688889999999999999999999999999988887665
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-41 Score=354.03 Aligned_cols=419 Identities=19% Similarity=0.234 Sum_probs=322.1
Q ss_pred HHHHHHHHHHHHhhhhhhccccccHHHHHhhhcCCCCCccCcchhHHHHHHHHHHHHHHHHhHHHhhhccchhHHHHHhh
Q psy11547 86 SLSLTLAVFANLGNVNTGMVFGFSAAATSQLISRDSPYRITSDESTWIASLSAIGTMVGCVLGGYMMDLVGRKMTLIITE 165 (587)
Q Consensus 86 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~i~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~ 165 (587)
+++|.++++++++.+.++++...++.++|.+..+ ++++..+.+++.+++.++.+++++++|+++||+|||+++++++
T Consensus 163 ~~~~~l~~i~~l~~~~~g~d~~~is~ilp~i~~~---~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~l 239 (742)
T TIGR01299 163 RFQWALFFVLGLALMADGVEVFVVGFVLPSAEKD---LCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICL 239 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHH
Confidence 4578888888999999999999999999999885 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCcchhhHHhhhhhhccccccccccceeeeeccCCCcchhHhHHHHHHHHHHHHHHHHhhhhh
Q psy11547 166 VPTILGWALIALAPSLPSSILPWIFTGRILTGLGSGMVGAPSRIYTAECSQPHLRGMLSSLASFGVSLGVLFEYSLGAFL 245 (587)
Q Consensus 166 ~~~~i~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l 245 (587)
+++++++++++++++++ .++++|++.|++.|+..++..+++.|++|+++|++.+++..+++.+|.++++.++..+
T Consensus 240 il~~i~~ll~afa~s~~-----~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~i 314 (742)
T TIGR01299 240 SVNGFFAFFSSFVQGYG-----FFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAI 314 (742)
T ss_pred HHHHHHHHHHHHHhhHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998 9999999999999999999999999999999999999999999999999998766433
Q ss_pred -----------------hHHHHHHHHHHHHHHHHHHhcccCCCchHHHhcCCHHHHHHHHHHHhCCCcch---HHHH---
Q psy11547 246 -----------------SWDTVAAISTIIPVLSIIAGCLMPESPSWLLSQGRKDACRNSLRRLRANNYDV---EKEV--- 302 (587)
Q Consensus 246 -----------------~wr~~f~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~--- 302 (587)
+||+.+++.++++++.+++.+++||||+|+..+++.+++.+.+++++..+... +...
T Consensus 315 l~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~lPESPrwL~~~gr~~eA~~iL~~i~~~n~~~~~~~~~~~~~ 394 (742)
T TIGR01299 315 IPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFLENGKHDEAWMILKLIHDTNMRAKGHPEKVFSV 394 (742)
T ss_pred HHhccchhccccccccccHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHCCCHHHHHHHHHHHhcCCCCCcCchhHHHHH
Confidence 59999999888888877777789999999999999999999999987765321 1110
Q ss_pred hhHHHHHHHH---H-HHhhh------------h----hhHhHHhhhcCCchHHHHHHHHHHHHHHhccchhhHhcHHHHH
Q psy11547 303 QGLYEFSKRQ---E-TQKSR------------N----FKETLAAIVEPACLKPFVILMLYFLIYQFSGVNPVTFYAVNIF 362 (587)
Q Consensus 303 ~~~~~~~~~~---~-~~~~~------------~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (587)
.......... + +++.. . +..+. .+.++.++++++++...+++..+ +++.+..|.|.++
T Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~lf~~~~~~~tl~l~~~wf~~~~-~yygl~~w~P~~~ 472 (742)
T TIGR01299 395 NHIKTIHQEDELIEIESDTGTWYQRCFVRALSEGGGIWGNFL-RCFNPEVREITIKLMGVWFTLSF-GYYGLSVWFPDMI 472 (742)
T ss_pred HHHHHhhhhhhhhcccccccchhhcchhhhhhhhhhHHHHHH-HHcCccHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 0010000000 0 00000 0 01222 34566777777777777766555 5777888888765
Q ss_pred Hhc------------------------------------------CCC--------------------------------
Q psy11547 363 KDA------------------------------------------GAH-------------------------------- 368 (587)
Q Consensus 363 ~~~------------------------------------------g~~-------------------------------- 368 (587)
+.. |+.
T Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~ 552 (742)
T TIGR01299 473 KHLQADDYAALTKNFPGDKVAHFSFNFTLENQIHRGGEYDNDKFIGLKFKSVSFEDSLFEECTFDDVTSSNTFFKNCTFI 552 (742)
T ss_pred HHHHHHHHHhhhccccccchhccccccchhhhhccccccccchhhcccccccccccccccccceeeccccchhhhccchh
Confidence 431 000
Q ss_pred ------------------------------------------cchHHHHHHHHHHHHHHHHhHHHhhcccCCchhhHhhh
Q psy11547 369 ------------------------------------------VNNNLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISS 406 (587)
Q Consensus 369 ------------------------------------------~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~~~~~~~~~ 406 (587)
...+....+..++.+++.+++++++||+|||+++.++.
T Consensus 553 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~ 632 (742)
T TIGR01299 553 DTLFENTDFEEYKFIDSEFQNCSFLHNKEGCPIDFDGDDEGAYMIYFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSM 632 (742)
T ss_pred hhhccccchhhhhhhhhhhhhccccccCCccCccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 00123345566888999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCCCcCccchhHHHHHHHHHHHHHhccccccceeeeeccCCCCchhhHHHHHHHHHHHH
Q psy11547 407 IGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFF 486 (587)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g 486 (587)
++.+++++++++. ......++..++++++.. +..+...++++|++|++.|++++|+.++...+|
T Consensus 633 ~lsai~~ll~~~~---------------~s~~~ll~~~~l~g~~~~-~~~~~~~a~~aEl~Pt~~Rgta~Gi~~~~~rlG 696 (742)
T TIGR01299 633 VLSCISCFFLSFG---------------NSESAMIALLCLFGGLSI-AAWNALDVLTVELYPSDKRATAFGFLNALCKAA 696 (742)
T ss_pred HHHHHHHHHHHHH---------------ccHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHH
Confidence 8888887776651 122222333333333333 334555689999999999999999999999999
Q ss_pred HHHHHHhhHHHHHhhhhhhHHHHHHHHHHHHHHHhheecccCCCCC
Q psy11547 487 IFLTVKSYNMFQTHLTKEGTFLMYGCISLLGTIFFYVYLPETKNKT 532 (587)
Q Consensus 487 ~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 532 (587)
.+++|.+++.+.+. +...+|++.+++.++++++.+ ++||++++.
T Consensus 697 aiigp~i~g~L~~~-~~~~pf~i~a~~lll~~ll~~-~LPET~~~~ 740 (742)
T TIGR01299 697 AVLGILIFGSFVGI-TKAAPILFASAALACGGLLAL-KLPDTRGQV 740 (742)
T ss_pred HHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHH-hCCCCcccc
Confidence 99999999988775 455677777777776666544 558887754
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-39 Score=338.45 Aligned_cols=435 Identities=25% Similarity=0.465 Sum_probs=323.2
Q ss_pred HHHHHHHHHHHhhhhhhccccccHHHHHhhhcCC-----CCCccCcchhHHHHHHHHHHHHHHHHhHHHhhhccchhHHH
Q psy11547 87 LSLTLAVFANLGNVNTGMVFGFSAAATSQLISRD-----SPYRITSDESTWIASLSAIGTMVGCVLGGYMMDLVGRKMTL 161 (587)
Q Consensus 87 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~s~~~~g~i~s~~~l~~~i~~~~~g~l~dr~Grr~~l 161 (587)
++...+++++++.+.++++...+++..|.+.+.. .+++.+..+.+++.+++.++..++++++|+++||+|||+++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~ 88 (479)
T PRK10077 9 YIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSL 88 (479)
T ss_pred HHHHHHHHHHHHHHhcCcccceehHhHHHHHHHhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence 3667777888899999999999999999887641 13488999999999999999999999999999999999999
Q ss_pred HHhhHHHHHHHHHHHhcC---------CCCCCcchhhHHhhhhhhccccccccccceeeeeccCCCcchhHhHHHHHHHH
Q psy11547 162 IITEVPTILGWALIALAP---------SLPSSILPWIFTGRILTGLGSGMVGAPSRIYTAECSQPHLRGMLSSLASFGVS 232 (587)
Q Consensus 162 ~~~~~~~~i~~~~~~~~~---------~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~ 232 (587)
+++.++++++.++++++. ++. .++.++++|+++|++.|...+...+++.|++|+++|++++++.+.+..
T Consensus 89 ~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~ 166 (479)
T PRK10077 89 KIAAVLFFISALGSAWPEFGFTSIGPDNTG--YVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAII 166 (479)
T ss_pred HHHHHHHHHHHHHHHhhccccccccccchh--HHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHH
Confidence 999999999998888642 211 122678999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhh------------hHHHHHHHHHHHHHHHHHHhcccCCCchHHHhcCCHHHHHHHHHHHhCCCcchHH
Q psy11547 233 LGVLFEYSLGAFL------------SWDTVAAISTIIPVLSIIAGCLMPESPSWLLSQGRKDACRNSLRRLRANNYDVEK 300 (587)
Q Consensus 233 ~G~~i~~~l~~~l------------~wr~~f~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (587)
+|.++++.++..+ +||+.|++.+++.++..+..+++||+|+++..+++.+++.+..++....... ..
T Consensus 167 ~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~~~~~-~~ 245 (479)
T PRK10077 167 FGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKIMGNTLA-TQ 245 (479)
T ss_pred HHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHcCCHHHHHHHHHHHcCChhH-HH
Confidence 9999988776432 7999999998888887776777999999988888877776666655432211 11
Q ss_pred HHhhHHHHHHHHHHHhhhhhhHhHHhhhcCCchHHHHHHHHHHHHHHhccchhhHhcHHHHHHhcCCCc-chHHHHHHHH
Q psy11547 301 EVQGLYEFSKRQETQKSRNFKETLAAIVEPACLKPFVILMLYFLIYQFSGVNPVTFYAVNIFKDAGAHV-NNNLAAVIMG 379 (587)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~ 379 (587)
..++..+ .... + .......+. .........+....+.+..+++...++.|.+.++.|.+. .........+
T Consensus 246 ~~~~~~~---~~~~-~---~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~~~~ 316 (479)
T PRK10077 246 ALQEIKH---SLDH-G---RKTGGKLLM--FGVGVIVIGVMLSVFQQFVGINVVLYYAPEIFKTLGASTDIALLQTIIVG 316 (479)
T ss_pred HHHHHHH---HHHH-h---hhhhhhhcc--hhHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHcCCCCchHHHHHHHHH
Confidence 1111100 0000 0 000000010 011112222233344445556667788899888888873 3455666778
Q ss_pred HHHHHHHHhHHHhhcccCCchhhHhhhHHHHHHHHHHHHHHHhccCCCCCCCcCccchhHHHHHHHHHHHHHhccccccc
Q psy11547 380 IVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVP 459 (587)
Q Consensus 380 ~~~~i~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (587)
+..+++.++.+++.||+|||+++..+.++++++.+++...... ..........+.++..++...+.+..
T Consensus 317 ~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (479)
T PRK10077 317 VINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYT-----------QAPGIVALLSMLFYVAAFAMSWGPVC 385 (479)
T ss_pred HHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhc-----------CcccHHHHHHHHHHHHHHhccccchh
Confidence 8899999999999999999999999998888887776543221 11122333344445555555555777
Q ss_pred eeeeeccCCCCchhhHHHHHHHHHHHHHHHHHHhhHHHH------HhhhhhhHHHHHHHHHHHHHHHhheecccCCCCCH
Q psy11547 460 WVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQ------THLTKEGTFLMYGCISLLGTIFFYVYLPETKNKTL 533 (587)
Q Consensus 460 ~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 (587)
+.++.|.+|++.|+++.|+.+...+++.++++.+++.+. +..++...|++++++++++.++.+++.||+|+++.
T Consensus 386 ~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 465 (479)
T PRK10077 386 WVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTL 465 (479)
T ss_pred HHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHHHHHHHhccccCCCCCH
Confidence 789999999999999999999999999999988776554 56777778888888888887777778899999998
Q ss_pred HHHHHHHhcCC
Q psy11547 534 QEIEEQFAGKS 544 (587)
Q Consensus 534 ~~~~~~~~~~~ 544 (587)
+|.++..++..
T Consensus 466 ~~~~~~~~~~~ 476 (479)
T PRK10077 466 EEMEALWEPET 476 (479)
T ss_pred HHHHHHHhhcc
Confidence 88777665443
|
|
| >KOG0254|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-39 Score=333.36 Aligned_cols=449 Identities=30% Similarity=0.490 Sum_probs=367.5
Q ss_pred HHHHHHHHHHhhhhhhcc--ccccHHHHHhhhcCCCC--CccCc--chhHHHHHHHHHHHHHHHHhHHHhhhccchhHHH
Q psy11547 88 SLTLAVFANLGNVNTGMV--FGFSAAATSQLISRDSP--YRITS--DESTWIASLSAIGTMVGCVLGGYMMDLVGRKMTL 161 (587)
Q Consensus 88 ~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~--~~~s~--~~~g~i~s~~~l~~~i~~~~~g~l~dr~Grr~~l 161 (587)
.........++.+..+++ .+..++....+...... ...+. .+.+|+.+++.++..++++++|+++|++|||+.+
T Consensus 43 ~~~~~~~~~~~~~~fg~~g~~g~~s~~~~~~~~~~~~~~~~~~~~~~~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l 122 (513)
T KOG0254|consen 43 VILLALVAALGGLLFGYDGDIGGISGALDFLQRFASLYDLSTGEYSVRQGLLTSILNLGALVGSLLAGRLGDRIGRKKTL 122 (513)
T ss_pred hHHHHHHHHHHHHHhCcccccccchhhHHHHHhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 566777778888888886 67777777777664221 22222 3559999999999999999999999999999999
Q ss_pred HHhhHHHHHHHHHHHhcCCCCCCcchhhHHhhhhhhccccccccccceeeeeccCCCcchhHhHHHHHHHHHHHHHHHHh
Q psy11547 162 IITEVPTILGWALIALAPSLPSSILPWIFTGRILTGLGSGMVGAPSRIYTAECSQPHLRGMLSSLASFGVSLGVLFEYSL 241 (587)
Q Consensus 162 ~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l 241 (587)
+++.+++.++.+++++++|+. .++++|+++|+|.|+...+.+.|++|..|++.||...+..+....+|..++..+
T Consensus 123 ~~~~~~~~iG~ii~~~a~~~~-----~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~ 197 (513)
T KOG0254|consen 123 LLAVVLFLIGAIIIALAPSWY-----QLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLGYCI 197 (513)
T ss_pred HHHHHHHHHHHHHHHHhhhHH-----HHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999 999999999999999999999999999999999999999999999999999888
Q ss_pred hhhh-----hHHHHHHHHHHHHHHHHHHhcccCCCchHHHhcCCHHHHHHHHHHHhCCC-cchHHHHhhHHHHHHHHHHH
Q psy11547 242 GAFL-----SWDTVAAISTIIPVLSIIAGCLMPESPSWLLSQGRKDACRNSLRRLRANN-YDVEKEVQGLYEFSKRQETQ 315 (587)
Q Consensus 242 ~~~l-----~wr~~f~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 315 (587)
+... +||..+.+..+.+++..+..+++||+|+|+.++++.+++++.+++++..+ .+.+.+..... .....+.
T Consensus 198 ~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~pesp~~L~~~g~~~~a~~~l~~l~g~~~~~~~~~~~~~~--~~~~~~~ 275 (513)
T KOG0254|consen 198 NYGTSKVYAGWRIPLGLALIPAVILALGMLFLPESPRWLIEKGRLEEAKRSLKRLRGLSPEDVEVELELLK--IKLLVEA 275 (513)
T ss_pred hhhhccCCccHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHcCChHHHHHHHHHHhCCCCcchHHHHHHHH--HHHHHhh
Confidence 8777 59999999999999988887779999999999999999999999998843 33344433333 1111111
Q ss_pred hhhhhhHhHHhhhcCCchHHHHHHHHHHHHHHhccchhhHhcHHHHHHhcCCCcchHHHHHHHHHHHHHHHHhHHHhhcc
Q psy11547 316 KSRNFKETLAAIVEPACLKPFVILMLYFLIYQFSGVNPVTFYAVNIFKDAGAHVNNNLAAVIMGIVRLIFTIASCIMMKK 395 (587)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~g~l~d~ 395 (587)
.....+..+..+..+..+++..+.+.+..++++++.+...+|.+.+++..|..........+.++..+++.+++.++.||
T Consensus 276 ~~~~~~~~~~~l~~~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~~~~~~~~~~v~~~~t~~~~~lvd~ 355 (513)
T KOG0254|consen 276 EVAEGKASWGELFSPKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDTFLASIILGVVNFLGTLVATYLVDR 355 (513)
T ss_pred hcccccccHHHhcCcchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111112333444778888899999999999999999999999999998887444677777888899999999999999
Q ss_pred cCCchhhHhhhHHHHHHHHHHHHHHHhccCCCCCCCcCccchhHHHHHHHHHHHHHhccccccceeeeeccCCCCchhhH
Q psy11547 396 MGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIV 475 (587)
Q Consensus 396 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~ 475 (587)
+|||+.++.+...+.++.++++........... ......+..+...+++...+..++.++.|.+.+|.+|.+.|+.+
T Consensus 356 ~gRr~lll~s~~~m~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~ 432 (513)
T KOG0254|consen 356 FGRRKLLLFGAAGMSICLVILAVVGVFALYYPN---SSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKG 432 (513)
T ss_pred hccHHHHHHhHHHHHHHHHHHHHHHHHhccCCC---cccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhh
Confidence 999999999999999999988876655221100 01234677778888888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHhhhhhhHHHHHHHHHHHHHH-HhheecccCCCCCHHHHHHHHhcCCCC
Q psy11547 476 GGLTTCACHFFIFLTVKSYNMFQTHLTKEGTFLMYGCISLLGTI-FFYVYLPETKNKTLQEIEEQFAGKSKK 546 (587)
Q Consensus 476 ~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 546 (587)
.++...++++..++....+..+.+..+....|..+++++.+..+ ++++++||+|+++.+++++...++...
T Consensus 433 ~s~~~~~n~~~~~~v~~~~~~~~~~~~~~~~f~~f~~~~~~~~~~fv~~~~pETkg~sleei~~~~~~~~~~ 504 (513)
T KOG0254|consen 433 ASLAVAVNWLWNFLISFFFPFITEALGIGGTFGYFGGICLLSLIIFVFFFVPETKGLTLEEINELFEEGIKP 504 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHheEEcccCCCCcHHHHHHHHHcCCch
Confidence 99999999999988877777777665545577777777777777 788999999999999999877665443
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-40 Score=341.88 Aligned_cols=432 Identities=16% Similarity=0.173 Sum_probs=308.9
Q ss_pred HHHHHHHHHHHHhhhhhhccccccHHHHHhhhcCC--CCCccCcchhHHHHHHHHHHHHHHHHhHHHhhhccchhHHHHH
Q psy11547 86 SLSLTLAVFANLGNVNTGMVFGFSAAATSQLISRD--SPYRITSDESTWIASLSAIGTMVGCVLGGYMMDLVGRKMTLII 163 (587)
Q Consensus 86 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~~~~g~i~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~ 163 (587)
++++.++++++++.+.++++....+.++|.+..+. .+.+.+..+.+++.+.+.+++.++++++|+++||+|||+++.+
T Consensus 12 ~~~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~ 91 (502)
T TIGR00887 12 WQHFRAIVIAGVGFFTDSYDLFCISLVTKMLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGM 91 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHH
Confidence 34777888899999999999999999998876531 1234566678999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhcCCCCCC-cchhhHHhhhhhhccccccccccceeeeeccCCCcchhHhHHHHHHHHHHHHHHHHhh
Q psy11547 164 TEVPTILGWALIALAPSLPSS-ILPWIFTGRILTGLGSGMVGAPSRIYTAECSQPHLRGMLSSLASFGVSLGVLFEYSLG 242 (587)
Q Consensus 164 ~~~~~~i~~~~~~~~~~~~~~-~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~ 242 (587)
+.+++.+++++++++++.... .++.++++|+++|++.|...+....++.|++|+++|++++++.+....+|.++++.++
T Consensus 92 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~ 171 (502)
T TIGR00887 92 ELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVA 171 (502)
T ss_pred HHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998762100 0128999999999999999999999999999999999999999999999999888776
Q ss_pred hhh---------------------------hHHHHHHHHHHHHHHHHHHhcccCCCchHHHhcCCHH-HHHHHHHHHhCC
Q psy11547 243 AFL---------------------------SWDTVAAISTIIPVLSIIAGCLMPESPSWLLSQGRKD-ACRNSLRRLRAN 294 (587)
Q Consensus 243 ~~l---------------------------~wr~~f~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~-~~~~~~~~~~~~ 294 (587)
..+ +||++|.+.++++++.++..+++||||+|+..+++.+ ++.+.+++....
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~~~lpESpr~l~~~~~~~~~a~~~~~~~~~~ 251 (502)
T TIGR00887 172 LIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRYTADVAKDVEQAASDMSAVLQV 251 (502)
T ss_pred HHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhCcchHHHHHHHHHHhcc
Confidence 432 5999999988888888787788999999998887764 466666655443
Q ss_pred CcchHHHHhhHHHHHHHHHHHhhhhhhHhHHhhhcC---CchHHHHHHHHHHHHHHhccchhhHhcHHHHHHhcCCCcc-
Q psy11547 295 NYDVEKEVQGLYEFSKRQETQKSRNFKETLAAIVEP---ACLKPFVILMLYFLIYQFSGVNPVTFYAVNIFKDAGAHVN- 370 (587)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~- 370 (587)
+.+++. ++..+.+++ ++....++.+.++++ +.++..+.....++.. ...++....+.|.++++.|++..
T Consensus 252 ~~~~~~--~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~y~~~~~~p~i~~~~G~~~~~ 324 (502)
T TIGR00887 252 KIEAEP--DEVEKASTA----VEVPKASWSDFFTHFFKWRHGKHLLGTAGSWFLL-DIAFYGVNLNQKVILSAIGYSPPA 324 (502)
T ss_pred ccccCc--ccccchhcc----ccchhhhHHHHHHHHhhhHHHHHHHHHHHHHHHH-HHHHHccccccHHHHHHHcCCCCc
Confidence 221111 111100000 011112344444422 2222222222222222 22344456678888888887622
Q ss_pred hH------------HHHHHHHHHHHHHHHhHHHhhcccCCchhhHhhhHHHHHHHHHHHHHHHhccCCCCCCCcCccchh
Q psy11547 371 NN------------LAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSY 438 (587)
Q Consensus 371 ~~------------~~~~~~~~~~~i~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (587)
.. ....+..++.+++.++.+++.||+|||+.+.++..+.+++++++...... ....
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~------------~~~~ 392 (502)
T TIGR00887 325 ATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNH------------LSTH 392 (502)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHh------------cchh
Confidence 11 12233445667788999999999999999888887777776665543211 0111
Q ss_pred HHHHHHHHHHHHHhccccccceeeeeccCCCCchhhHHHHHHHHHHHHHHHHHHhhHHHHHh----------hhhhhHHH
Q psy11547 439 LPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTH----------LTKEGTFL 508 (587)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~----------~g~~~~~~ 508 (587)
.......++...+..+..+..+.+.+|.+|++.|+++.|+.+.+++++++++|.+.+.+.+. .++...|+
T Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 472 (502)
T TIGR00887 393 GFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLE 472 (502)
T ss_pred HHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHH
Confidence 11122222233344555666778889999999999999999999999999999999999884 33455778
Q ss_pred HHHHHHHHHHHHhheecccCCCCCHHHHH
Q psy11547 509 MYGCISLLGTIFFYVYLPETKNKTLQEIE 537 (587)
Q Consensus 509 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 537 (587)
+++++++++.++ ++++||++++++||++
T Consensus 473 i~~~~~~~~~i~-~~~lpEt~~~~leei~ 500 (502)
T TIGR00887 473 IFALFMFLGILF-TLLIPETKGKSLEELS 500 (502)
T ss_pred HHHHHHHHHHHH-heEeccCCCCCHHhhh
Confidence 888877777664 4677999999887764
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-38 Score=327.79 Aligned_cols=436 Identities=25% Similarity=0.471 Sum_probs=321.2
Q ss_pred HHHHHHHHHHhhhhhhccccccHHHHHhhhcCCCCCccC--------cchhHHHHHHHHHHHHHHHHhHHHhhhccchhH
Q psy11547 88 SLTLAVFANLGNVNTGMVFGFSAAATSQLISRDSPYRIT--------SDESTWIASLSAIGTMVGCVLGGYMMDLVGRKM 159 (587)
Q Consensus 88 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s--------~~~~g~i~s~~~l~~~i~~~~~g~l~dr~Grr~ 159 (587)
.+...+++.++.+..+++.....+.+|.+..+ ++.+ ..+.+++.+++.++..++++++|+++||+|||+
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~ 102 (481)
T TIGR00879 26 VALLSLIAAIGGLMFGYDTGVIGGALALPAFE---FKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKK 102 (481)
T ss_pred HHHHHHHHHHHHHhcccccchhhhhhhcHHHH---HhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHH
Confidence 55666677778888899999998888877764 4444 899999999999999999999999999999999
Q ss_pred HHHHhhHHHHHHHHHHHhcCCCCCCcchhhHHhhhhhhccccccccccceeeeeccCCCcchhHhHHHHHHHHHHHHHHH
Q psy11547 160 TLIITEVPTILGWALIALAPSLPSSILPWIFTGRILTGLGSGMVGAPSRIYTAECSQPHLRGMLSSLASFGVSLGVLFEY 239 (587)
Q Consensus 160 ~l~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~ 239 (587)
+++++.+++.++.+++.+..+.. .++.++++|+++|++.+...+...+++.|++|+++|++++++.+.+..+|.++++
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~ 180 (481)
T TIGR00879 103 SLLIIALLFVIGAILMGLAAFAL--SVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAY 180 (481)
T ss_pred HHHHHHHHHHHHHHHHHHhcccc--chHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHH
Confidence 99999999999999997654432 1126889999999999999999999999999999999999999999999999999
Q ss_pred Hhh---hhh----hHHHHHHHHHHHHHHHHHHhcccCCCchHHHhcCCHHHHHHHHHHHhCCCcchHHHHhhHHHHHHHH
Q psy11547 240 SLG---AFL----SWDTVAAISTIIPVLSIIAGCLMPESPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQGLYEFSKRQ 312 (587)
Q Consensus 240 ~l~---~~l----~wr~~f~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (587)
.++ ... +||+.|++.++..++.++..+++||+|+++..+++.++..+..++....+.................
T Consensus 181 ~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (481)
T TIGR00879 181 GFGSGKVSLNNTLGWRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKELLDELELIDIKR 260 (481)
T ss_pred HHHHHhhcCCCCccHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHcCChHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHH
Confidence 998 443 9999999977777777777777999998877777766655555544433322221111111111111
Q ss_pred HHHhhhhhhHhHHhhhcCC-chHHHHHHHHHHHHHHhccchhhHhcHHHHHHhcCCC-cchHHHHHHHHHHHHHHHHhHH
Q psy11547 313 ETQKSRNFKETLAAIVEPA-CLKPFVILMLYFLIYQFSGVNPVTFYAVNIFKDAGAH-VNNNLAAVIMGIVRLIFTIASC 390 (587)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~i~~~~~g 390 (587)
..+.+.....+.+.++..+ ...+.++...+..+..........++.|.+.++.|++ ...........++.+++.++.+
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g 340 (481)
T TIGR00879 261 SIEKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAI 340 (481)
T ss_pred HHHHhhccccHHHHHhcCchhHHHHHHHHHHHHHHHHhCCeehHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 1011111111222222111 2344445555555555555666778889998888887 4456677778888999999999
Q ss_pred HhhcccCCchhhHhhhHHHHHHHHHHHHHHHhccCCCCCCCcCccchhHHHHHHHHHHHHHhccccccceeeeeccCCCC
Q psy11547 391 IMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTK 470 (587)
Q Consensus 391 ~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 470 (587)
++.||++||+.+..+.++.+++.+++.......... . .....+..+....++..++..+..+....++.|.+|++
T Consensus 341 ~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 415 (481)
T TIGR00879 341 FLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTG-S----SKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLS 415 (481)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCC-c----ccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChH
Confidence 999999999998888777777766665322220000 0 00013334444555556666666677767889999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhHHHHHHHHHHHHHHHhheecccCCCCCH
Q psy11547 471 VRGIVGGLTTCACHFFIFLTVKSYNMFQTHLTKEGTFLMYGCISLLGTIFFYVYLPETKNKTL 533 (587)
Q Consensus 471 ~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 (587)
.|+++.|+.+...++|.++++.+.+.+.+..++...|++.+++++++.++.+++.+|+++++.
T Consensus 416 ~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~~~~~~~ 478 (481)
T TIGR00879 416 LRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPETKGRTL 478 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHHHHHHHHHHheecccCCCCCh
Confidence 999999999999999999999999999999999999999998888888877777787776554
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-37 Score=315.33 Aligned_cols=397 Identities=16% Similarity=0.127 Sum_probs=264.8
Q ss_pred HHHHHHHhhhhhhccccccHHHHHhhhcCCCCCccCcch-hHH-----HHHHHHHHHHHHHHhHHHhhhccchhHHHHHh
Q psy11547 91 LAVFANLGNVNTGMVFGFSAAATSQLISRDSPYRITSDE-STW-----IASLSAIGTMVGCVLGGYMMDLVGRKMTLIIT 164 (587)
Q Consensus 91 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~g~-----i~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~ 164 (587)
..+.+.++++++++|....+...|.+.++ ++.+.++ .++ +.++..+++.++++++|+++||+|||+++.++
T Consensus 17 ~~~~~~~g~~~~~~d~~~~~~~~~~i~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~ 93 (490)
T PRK10642 17 AITAASLGNAMEWFDFGVYGFVAYALGKV---FFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAIT 93 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 55667789999999999999999988875 6433322 122 25788899999999999999999999999999
Q ss_pred hHHHHHHHHHHHhcCCCCCCcc---hhhHHhhhhhhccccccccccceeeeeccCCCcchhHhHHHHHHHHHHHHHHHHh
Q psy11547 165 EVPTILGWALIALAPSLPSSIL---PWIFTGRILTGLGSGMVGAPSRIYTAECSQPHLRGMLSSLASFGVSLGVLFEYSL 241 (587)
Q Consensus 165 ~~~~~i~~~~~~~~~~~~~~~~---~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l 241 (587)
+++++++++++++++++.+... ..++++|+++|++.|+.++...+++.|++|+++||++.++...+..+|.++++.+
T Consensus 94 ~~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~ 173 (490)
T PRK10642 94 IVIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGV 173 (490)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999861110 1278999999999999999999999999999999999999998888888887755
Q ss_pred hhh------------hhHHHHHHHHHHHHHHHHHHhcccCCCchHHHhcCCHHHHHHHHHHHhCCCcchHHHHhhHHHHH
Q psy11547 242 GAF------------LSWDTVAAISTIIPVLSIIAGCLMPESPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQGLYEFS 309 (587)
Q Consensus 242 ~~~------------l~wr~~f~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (587)
... .+||+.|++.++++++.+++...+||+|+|...+++.++..+ ..
T Consensus 174 ~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~~~~~~~~~~esp~~~~~~~~~~~~~~-------~~-------------- 232 (490)
T PRK10642 174 VVLISTIVGEANFLDWGWRIPFFIALPLGIIGLYLRHALEETPAFQQHVDKLEQGDR-------EG-------------- 232 (490)
T ss_pred HHHHHHhcCHHHhcCccHHHHHHHHHHHHHHHHHHHHcCCCChhHHHHHHhhhhhcc-------cc--------------
Confidence 432 289999999887777666665669999987533221110000 00
Q ss_pred HHHHHHhhhhhhHhHHhhhcCCchHHHHHHHHHHHHHHhccchhhHhcHHHHHHh-cCCC-cchHHHHHHHHHHHHHHHH
Q psy11547 310 KRQETQKSRNFKETLAAIVEPACLKPFVILMLYFLIYQFSGVNPVTFYAVNIFKD-AGAH-VNNNLAAVIMGIVRLIFTI 387 (587)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~-~~~~~~~~~~~~~~~i~~~ 387 (587)
. .+.+..++.+.+++ .++.........+ .....++....|.|.++++ .|++ ...........++.+++.+
T Consensus 233 --~---~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~ 304 (490)
T PRK10642 233 --L---QDGPKVSFKEIATK--HWRSLLTCIGLVI-ATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQP 304 (490)
T ss_pred --c---cccccCCHHHHHHH--hHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 0 00001122233332 1222222222222 2223355566778888754 5776 3344555566777888999
Q ss_pred hHHHhhcccCCchhhHhhhHHHHHHHHHHHHHHHhccCCCCCCCcCccchhHHHHHHHHHHHHHhccccccceeeeeccC
Q psy11547 388 ASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVY 467 (587)
Q Consensus 388 ~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (587)
+.|+++||+|||+.+..+.++..++.+.+.... . ...........++.+.+....... ...++.|.+
T Consensus 305 ~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~-~-----------~~~~~~~~~~~~~~g~~~~~~~g~-~~~~~~~~~ 371 (490)
T PRK10642 305 VMGLLSDRFGRRPFVILGSVALFVLAIPAFILI-N-----------SNVIGLIFAGLLMLAVILNCFTGV-MASTLPAMF 371 (490)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH-h-----------CCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHC
Confidence 999999999999988776654333322211111 1 111122222222222222222222 236677899
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHHHhhHHHHHhhh-hhhHHHHHHHHHHHHHHHhheecccCCCCCH
Q psy11547 468 PTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLT-KEGTFLMYGCISLLGTIFFYVYLPETKNKTL 533 (587)
Q Consensus 468 p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 (587)
|++.|+++.|+.+.+..+++.++|.+.+.+.+..+ +...+++..+.++++.+. .++.||++++..
T Consensus 372 p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~-~~~~pes~~~~~ 437 (490)
T PRK10642 372 PTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLIT-GVTMKETANRPL 437 (490)
T ss_pred CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHH-HHHhccccCCCC
Confidence 99999999998777788888899999999887654 454555555555554443 345588766543
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-36 Score=313.58 Aligned_cols=390 Identities=22% Similarity=0.315 Sum_probs=290.1
Q ss_pred HHHHhhhcCCCCCccC---cchhHHHHHHHHHHHHHHHHhHHHhhhccchhHHHHHhhHHHHHHHHHHHhcCCCCCCcch
Q psy11547 111 AATSQLISRDSPYRIT---SDESTWIASLSAIGTMVGCVLGGYMMDLVGRKMTLIITEVPTILGWALIALAPSLPSSILP 187 (587)
Q Consensus 111 ~~~~~~~~~~~~~~~s---~~~~g~i~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~ 187 (587)
+..|.+..| ++++ ..+.+++.+++.++..++++++|+++||+|||++++++.++.+++.++++++++++
T Consensus 110 ~~~~~i~~e---~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~----- 181 (505)
T TIGR00898 110 TFSSTIVTE---WDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYT----- 181 (505)
T ss_pred cccccEEEE---ecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHH-----
Confidence 456777775 9999 89999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHhhhhhhccccccccccceeeeeccCCCcchhHhHHHHHHHHHHHHHHHHhhhhh-hHHHHHHHHHHHHHHHHHHhc
Q psy11547 188 WIFTGRILTGLGSGMVGAPSRIYTAECSQPHLRGMLSSLASFGVSLGVLFEYSLGAFL-SWDTVAAISTIIPVLSIIAGC 266 (587)
Q Consensus 188 ~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l-~wr~~f~~~~~~~~~~~~~~~ 266 (587)
.++++|++.|++.+...+...+++.|++|+++|+++.++...+..+|.++++.++..+ +||+.|++.+++.++..+..+
T Consensus 182 ~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~wr~~~~~~~i~~~~~~~~~~ 261 (505)
T TIGR00898 182 VFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPDWRWLQLAVSLPTFLFFLLSW 261 (505)
T ss_pred HHHHHHHHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999998877 899999999998888877777
Q ss_pred ccCCCchHHHhcCCHHHHHHHHHHHhCCCcchHHHHhhHHHHHHHHHHHhhhhhhHhHHhhhcCCchHHHHHHHHHHHHH
Q psy11547 267 LMPESPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQGLYEFSKRQETQKSRNFKETLAAIVEPACLKPFVILMLYFLIY 346 (587)
Q Consensus 267 ~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (587)
++||+|+|+..+++.+++.+.+++..+.+......... ....+++.+++.+.....+.++++.++...+.....++..
T Consensus 262 ~~~esp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 339 (505)
T TIGR00898 262 FVPESPRWLISQGRIEEALKILQRIAKINGKKLPAEVL--SLSLEKDLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWFTT 339 (505)
T ss_pred hcCCChHHHHHCCCHHHHHHHHHHHHHHcCCCCCHHHH--hhhhhhhhhhccCCCcHHHHhCChHHHHHHHHHHHHHHHH
Confidence 79999999999999998888887765543321111000 0000000011111235567777776666555444433322
Q ss_pred HhccchhhHhcHHHHHHhcCCCcchHHHHHHHHHHHHHHHHhHHHhhcccCCchhhHhhhHHHHHHHHHHHHHHHhccCC
Q psy11547 347 QFSGVNPVTFYAVNIFKDAGAHVNNNLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDF 426 (587)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (587)
.+ ..+..+.+....+. +......+.++..+++.++.+++.||+|||+.+.++.++.+++++++.+..
T Consensus 340 ~~-----~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~------ 406 (505)
T TIGR00898 340 AF-----SYYGLVLDLGNLGG--NIYLDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVP------ 406 (505)
T ss_pred HH-----HHHHHhccccccCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcC------
Confidence 11 11112222222222 344556667788899999999999999999999988888777766655411
Q ss_pred CCCCCcCccchhHHHHHHHHHHHHHhccccccceeeeeccCCCCchhhHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhH
Q psy11547 427 WPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLTKEGT 506 (587)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~ 506 (587)
....+......++..++.. ...+..+.+.+|.+|++.|+++.|+.++...+|++++|.+.+ + +..+....
T Consensus 407 -------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~-~~~~~~~~ 476 (505)
T TIGR00898 407 -------VDLYFLRTALAVLGKFGIT-SAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY-L-GEKWLFLP 476 (505)
T ss_pred -------CCchHHHHHHHHHHHHHHH-HHHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH-H-HHHHHhhH
Confidence 1111222222222222222 233445688999999999999999999999999999999998 4 44566678
Q ss_pred HHHHHHHHHHHHHHhheecccCCCCCHH
Q psy11547 507 FLMYGCISLLGTIFFYVYLPETKNKTLQ 534 (587)
Q Consensus 507 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 (587)
+.+++++.+++.++. +++||+++++++
T Consensus 477 ~~~~~~~~~~~~~~~-~~lpet~~~~l~ 503 (505)
T TIGR00898 477 LVLFGGLALLAGILT-LFLPETKGVPLP 503 (505)
T ss_pred HHHHHHHHHHHHHHH-HcCcCCCCCCCC
Confidence 888887777776654 566888876543
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-35 Score=281.43 Aligned_cols=368 Identities=17% Similarity=0.215 Sum_probs=290.1
Q ss_pred HHHHHHHHHHhhhhhhccccccHHHHHhhhcCCCCCccCcchhHHHHHHHHHHHHHHHHhHHHhhhccchhHHHHHhhHH
Q psy11547 88 SLTLAVFANLGNVNTGMVFGFSAAATSQLISRDSPYRITSDESTWIASLSAIGTMVGCVLGGYMMDLVGRKMTLIITEVP 167 (587)
Q Consensus 88 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~i~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~ 167 (587)
.+..++...++.|..+........++|++.++ +|+|..+.|++.+.|.+++.++.++...+.||+.||++++..+.+
T Consensus 11 ~~~~l~aLa~~~F~igttEfv~~gLLp~iA~d---l~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~l 87 (394)
T COG2814 11 MWLALLALALAAFAIGTTEFVPVGLLPPIAAD---LGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLAL 87 (394)
T ss_pred chHHHHHHHHHHHHHHhHHHHHHhchHHHHHH---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHH
Confidence 44566777788888899999999999999994 999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCcchhhHHhhhhhhccccccccccceeeeeccCCCcchhHhHHHHHHHHHHHHHHHHhhhhh--
Q psy11547 168 TILGWALIALAPSLPSSILPWIFTGRILTGLGSGMVGAPSRIYTAECSQPHLRGMLSSLASFGVSLGVLFEYSLGAFL-- 245 (587)
Q Consensus 168 ~~i~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l-- 245 (587)
+.++++++++++||+ .++++|++.|++.|.+++...++..+..|+++|++++++..++..++.++|.+++.++
T Consensus 88 Fi~~n~l~alAp~f~-----~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~ 162 (394)
T COG2814 88 FIVSNLLSALAPSFA-----VLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQ 162 (394)
T ss_pred HHHHHHHHHHhccHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 999999999999999 9999999999999999999999999999999999999999999999999999999988
Q ss_pred --hHHHHHHHHHHHHHHHHHHhcc-cCCCchHHHhcCCHHHHHHHHHHHhCCCcchHHHHhhHHHHHHHHHHHhhhhhhH
Q psy11547 246 --SWDTVAAISTIIPVLSIIAGCL-MPESPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQGLYEFSKRQETQKSRNFKE 322 (587)
Q Consensus 246 --~wr~~f~~~~~~~~~~~~~~~~-~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (587)
|||..|++.++++++.++..+. +| |+.. .+ ++..+.++
T Consensus 163 ~~GWR~~F~~ia~l~ll~~~~~~~~lP--~~~~--~~-----------------------------------~~~~~~~~ 203 (394)
T COG2814 163 LFGWRATFLAIAVLALLALLLLWKLLP--PSEI--SG-----------------------------------SLPGPLRT 203 (394)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHhCC--CccC--CC-----------------------------------CCCcchhH
Confidence 9999999999999998877766 88 2100 00 02223344
Q ss_pred hHHhhhcCCchHHHHHHHHHHHHHHhccchh-hHhcHHHHHHhcCCC-cchHHHHHHHHHHHHHHHHhHHHhhcccCCch
Q psy11547 323 TLAAIVEPACLKPFVILMLYFLIYQFSGVNP-VTFYAVNIFKDAGAH-VNNNLAAVIMGIVRLIFTIASCIMMKKMGRRS 400 (587)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~~~ 400 (587)
..+.++++..+..+....+.. .+.+. ++|..|.+.+..|++ ....+....+++++++|+.++|++.|| +.|+
T Consensus 204 ~~~~l~~p~v~~~l~~t~l~~-----~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~ 277 (394)
T COG2814 204 LLRLLRRPGVLLGLLATFLFM-----TGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRR 277 (394)
T ss_pred HHHHhcCchHHHHHHHHHHHH-----cchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchh
Confidence 567777776554433333222 23444 444445555557888 566788999999999999999999999 8888
Q ss_pred hhHhhhHHHHHHHHHHHHHHHhccCCCCCCCcCccchhHHHHHHHHHHHHHhccccccceeeeeccCCCCchhhHHHHHH
Q psy11547 401 LTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTT 480 (587)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~ 480 (587)
.+.....+.++..+.+.+.. ...+..+....+++.......... ....++ .-++.++.+.+++.
T Consensus 278 ~l~~~~~l~a~~~l~l~~~~--------------~~~~~~~~~~~~wg~a~~~~~~~~-~~~~a~-~~p~~~~~a~sl~~ 341 (394)
T COG2814 278 ALIAALLLLALALLALTFTG--------------ASPALALALLFLWGFAFSPALQGL-QTRLAR-LAPDAADLAGSLNV 341 (394)
T ss_pred HHHHHHHHHHHHHHHHHHhc--------------chHHHHHHHHHHHHHHhhhhhhHH-HHHhcc-cCCCchHHHHHHHH
Confidence 88877777777776665522 122333333333322222222111 244444 33577799999999
Q ss_pred HHHHHHHHHHHHhhHHHHHhhhhhhHHHHHHHHHHHHHHHhhee
Q psy11547 481 CACHFFIFLTVKSYNMFQTHLTKEGTFLMYGCISLLGTIFFYVY 524 (587)
Q Consensus 481 ~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 524 (587)
...++|..+|..++|.++|+.|+....++.+.+.+++.++.+..
T Consensus 342 aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~~ 385 (394)
T COG2814 342 AAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLALLS 385 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998888888777765543
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-42 Score=355.67 Aligned_cols=428 Identities=31% Similarity=0.490 Sum_probs=334.4
Q ss_pred HHHHhhhhhhccccccHHHHHhhhcCCC-CCcc-------CcchhHHHHHHHHHHHHHHHHhHHHhhhccchhHHHHHhh
Q psy11547 94 FANLGNVNTGMVFGFSAAATSQLISRDS-PYRI-------TSDESTWIASLSAIGTMVGCVLGGYMMDLVGRKMTLIITE 165 (587)
Q Consensus 94 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-------s~~~~g~i~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~ 165 (587)
++.++.+.+|++.+..+...+....... ..+. +..+.+++.+...+|..+|++++|.++||+|||++++++.
T Consensus 4 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~ 83 (451)
T PF00083_consen 4 IASLGGFLFGYDLGLIGSFASLLGFLQFFGWSSSESSCEKSSLLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISA 83 (451)
T ss_pred eeHHHHHHHHHHHHHHhhHHhhhhhhhccccccccccccchHHHHHHHHHHHHhhhcccccccccccccccccccccccc
Confidence 4556678889999888777665552100 0111 2345789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcC---CCCCCcchhhHHhhhhhhccccccccccceeeeeccCCCcchhHhHHHHHHHHHHHHHHHHhh
Q psy11547 166 VPTILGWALIALAP---SLPSSILPWIFTGRILTGLGSGMVGAPSRIYTAECSQPHLRGMLSSLASFGVSLGVLFEYSLG 242 (587)
Q Consensus 166 ~~~~i~~~~~~~~~---~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~ 242 (587)
++..+++++.++++ +++ .+.++|+++|++.|+..+....++.|..|+++|++..++.+.++.+|.+++..++
T Consensus 84 ~~~~i~~~~~~~~~~~~~~~-----~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~ 158 (451)
T PF00083_consen 84 LLMIIGSILIAFAPSYNNFW-----MLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIG 158 (451)
T ss_pred cccccccccccccccccccc-----ccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999 888 9999999999999999999999999999999999999999999999999998877
Q ss_pred hhh----h---HHHHHHHHHHHHHHHHHHhcccCCCchHHHhcCCHHHHHHHHHHHhCCCcchHHHHhhHHHHHHHHHHH
Q psy11547 243 AFL----S---WDTVAAISTIIPVLSIIAGCLMPESPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQGLYEFSKRQETQ 315 (587)
Q Consensus 243 ~~l----~---wr~~f~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (587)
..+ + ||+.+++.++++++.++..+++||||+|+..++|.+++++.++++++.+..+++..+...+.++
T Consensus 159 ~~~~~~~~~~~Wr~~~~~~~~~~l~~~~~~~~~pESP~wL~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~----- 233 (451)
T PF00083_consen 159 YIVSYYSDNWGWRILLIFGAIPSLLVLLLRFFLPESPRWLLSKGRDEEAEKVLRKLRGKEIEDEEIEEIKAEKKE----- 233 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccceeccccccccccccccccccccccccccccccccccc-----
Confidence 654 4 9999999999998888888889999999999999999999888865543222221111111111
Q ss_pred hhhhhhHhHHhhhcCCchHHHHHHHHHHHHHHhccchhhHhcHHHHHHhcCCCcchHHHHHHHHHHHHHHHHhHHHhhcc
Q psy11547 316 KSRNFKETLAAIVEPACLKPFVILMLYFLIYQFSGVNPVTFYAVNIFKDAGAHVNNNLAAVIMGIVRLIFTIASCIMMKK 395 (587)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~g~l~d~ 395 (587)
.++.+..+.+.++++..+++.+....+..+.++.+.....+|.+.+++..+.+.. ........+...++.+++.++.||
T Consensus 234 ~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 312 (451)
T PF00083_consen 234 SQESKASWRDLFRNKKYRKRLLIALLLQFFQQFSGINFIFYYSPSIFENAGISNS-FLATLILGLVNFLGTLLAIFLIDR 312 (451)
T ss_pred ccccceeeeeccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccc
Confidence 1111134555666655566677777777777777777888888888888777744 444555667778888888899999
Q ss_pred cCCchhhHhhhHHHHHHHHHHHH-HHHhccCCCCCCCcCccchhHHHHHHHHHHHHHhccccccceeeeeccCCCCchhh
Q psy11547 396 MGRRSLTFISSIGCGVSMTGLGL-YIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGI 474 (587)
Q Consensus 396 ~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~ 474 (587)
+|||+++..+.++++++.+.++. .... .+.. .......+....++..++..++.+..+.+..|.+|++.|++
T Consensus 313 ~GRr~~~i~~~~~~~~~~~~~~~~~~~~-~~~~------~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~ 385 (451)
T PF00083_consen 313 FGRRKLLIIGLLLMAICSLILGIIFFLG-VSSS------SWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRST 385 (451)
T ss_pred cccccccccccccccccccccccccccc-cccc------cccccccceeeeecccccccccccccccccccccccccccc
Confidence 99999999998888887777651 1111 0000 01133344444455556676778888899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhHHHHHHHHHHHHHHHhheecccCCCCCHHHHHHH
Q psy11547 475 VGGLTTCACHFFIFLTVKSYNMFQTHLTKEGTFLMYGCISLLGTIFFYVYLPETKNKTLQEIEEQ 539 (587)
Q Consensus 475 ~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 539 (587)
+.|+...++++++++++.+.+.+.+..+....+.++++++++..++.++++||+|+++++|+++.
T Consensus 386 ~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~~lpET~g~~l~ei~~~ 450 (451)
T PF00083_consen 386 GIGLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVYFFLPETKGKTLEEIQEM 450 (451)
T ss_pred ccccccccccccccccccccccccccccccccchhhHHHHHHHHhheeEEEeeCCCCCHHHHHhh
Confidence 99999999999999999999988888775667888888888888888999999999999998875
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-37 Score=288.70 Aligned_cols=398 Identities=15% Similarity=0.122 Sum_probs=300.1
Q ss_pred HHHHHHHHHHHhhhhhhccccccHHHHHhhhcCCCCCccCcchhHHHHHHHHHHHHHHHHhHHHhhhccchhHHHHHhhH
Q psy11547 87 LSLTLAVFANLGNVNTGMVFGFSAAATSQLISRDSPYRITSDESTWIASLSAIGTMVGCVLGGYMMDLVGRKMTLIITEV 166 (587)
Q Consensus 87 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~i~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~ 166 (587)
+++.+.+.+.+++....+.+-.++.+.|.+.++ .++|.+|+|++.+++.++|+++-++.|.++||.+.|..+.++++
T Consensus 26 ~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~---~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLi 102 (448)
T COG2271 26 WRIQIFLSIFIGYAAFYLTRKNFNLAMPALIED---GGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLI 102 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHH
Confidence 367788888899999999999999999999995 88999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCcchhhHHhhhhhhccccccccccceeeeeccCCCcchhHhHHHHHHHHHHHHHHHHhh--hh
Q psy11547 167 PTILGWALIALAPSLPSSILPWIFTGRILTGLGSGMVGAPSRIYTAECSQPHLRGMLSSLASFGVSLGVLFEYSLG--AF 244 (587)
Q Consensus 167 ~~~i~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~--~~ 244 (587)
+.++.+++++++++.+ .+.++.+++|..+|.-+|.+...+..|++++|||+..++++++.++|..+.+++. ++
T Consensus 103 lsai~nil~Gfs~s~~-----~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~ 177 (448)
T COG2271 103 LSAIVNILFGFSPSLF-----LFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAF 177 (448)
T ss_pred HHHHHHHHHhhhhHHH-----HHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHH
Confidence 9999999999999999 9999999999999999999999999999999999999999999999999999988 66
Q ss_pred h----hHHHHHHHHHHHHHHHHHHhcc-cCCCchHHHhcCCHHHHHHHHHHHhCCCcchHHHHhhHHHHHHHHHHHhhhh
Q psy11547 245 L----SWDTVAAISTIIPVLSIIAGCL-MPESPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQGLYEFSKRQETQKSRN 319 (587)
Q Consensus 245 l----~wr~~f~~~~~~~~~~~~~~~~-~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (587)
+ +||..|++.++++++..++.++ ++|+|+..-- .+.++ .+++. .+.. +++++.+
T Consensus 178 ~~~~~~w~~~f~~pgiiaiival~~~~~~rd~Pqs~GL-P~ie~-------~~~d~----------~e~~---~~~~~~~ 236 (448)
T COG2271 178 FAFHGGWRAAFYFPGIIAIIVALILLFLLRDRPQSEGL-PPIEE-------YRGDP----------LEIY---EEEKENE 236 (448)
T ss_pred HHhccchhHHHHHHHHHHHHHHHHHHHHhCCCccccCC-CCHHH-------hhcCc----------hhhh---hhhccCC
Confidence 6 8999999999999887777666 8888742100 00111 00000 0000 0001111
Q ss_pred hhHhHHhhhcCCchHHHHHHHHHHHHHHhccchhhHhcHHHHHHh-cCCC-cchHHHHHHHHHHHHHHHHhHHHhhccc-
Q psy11547 320 FKETLAAIVEPACLKPFVILMLYFLIYQFSGVNPVTFYAVNIFKD-AGAH-VNNNLAAVIMGIVRLIFTIASCIMMKKM- 396 (587)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~-~~~~~~~~~~~~~~~i~~~~~g~l~d~~- 396 (587)
..+.++.+.+..+..+.++.+.+..++....-+.+..|.|.|+.+ .+++ .++.....++-.++++|+++.||++||+
T Consensus 237 ~ls~~~i~~~YVL~Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklf 316 (448)
T COG2271 237 GLTAWQIFVKYVLKNKLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLF 316 (448)
T ss_pred CccHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 122333333333333344444444444444577889999999887 6788 6778889999999999999999999997
Q ss_pred -CCchhhHhhhHHHHHHHHHHHHHHHhccCCCCCCCcCccchhHHHHHHHHHHHHHhccccccceeeeeccCCCCchhhH
Q psy11547 397 -GRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIV 475 (587)
Q Consensus 397 -g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~ 475 (587)
|||....+.+.+.....++..+ .. ...++.....++...+++..+...+.-....|..|++.-|++
T Consensus 317 kgrR~p~~~i~~~~i~~~~~~~w--~~-----------~~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA 383 (448)
T COG2271 317 KGRRGPMALIFMLLITASLVLYW--LA-----------PNGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTA 383 (448)
T ss_pred ccccchHHHHHHHHHHHHHHHHH--cC-----------CCccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccch
Confidence 4665554433333222222222 11 112233333333344444444433444677899999999999
Q ss_pred HHHHHHHHHH-HHHHHHHhhHHHHHhhhhhhHHHHHHHHHHHHHHHhheecc
Q psy11547 476 GGLTTCACHF-FIFLTVKSYNMFQTHLTKEGTFLMYGCISLLGTIFFYVYLP 526 (587)
Q Consensus 476 ~g~~~~~~~~-g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 526 (587)
.|+...++++ |.+.+....|.+.|.+||...|+++.+.++++.++......
T Consensus 384 ~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll~~~~~ 435 (448)
T COG2271 384 TGFVGLFAYLIGAALAGLPLGYIADTWGWDGGFIVLSIAALLAILLLLPVWN 435 (448)
T ss_pred hchhhhHHHHhhHHhcCCcceeeEecCCCcchHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999 88889999999999999999999888888777776554443
|
|
| >KOG0253|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-34 Score=261.82 Aligned_cols=417 Identities=18% Similarity=0.210 Sum_probs=315.7
Q ss_pred HHHHHHHHHHHhhhhhhccccccHHHHHhhhcCCCCCccCcchhHHHHHHHHHHHHHHHHhHHHhhhccchhHHHHHhhH
Q psy11547 87 LSLTLAVFANLGNVNTGMVFGFSAAATSQLISRDSPYRITSDESTWIASLSAIGTMVGCVLGGYMMDLVGRKMTLIITEV 166 (587)
Q Consensus 87 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~i~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~ 166 (587)
++|.....+.+++..+.+-.-..+.+.|.+... ++.+..|..++......|..+++..+|.++|++|||+.+.+..+
T Consensus 75 fq~yl~~~ag~gwmad~m~~m~~s~i~~~l~~~---w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l 151 (528)
T KOG0253|consen 75 FQWYLFFVAGMGWMADAMEMMLLSLILPALDEV---WGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFL 151 (528)
T ss_pred chhhHHHHhhhHHHHHHHHHHHHHHHHHHHHhh---hchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHH
Confidence 367777777888777777666667777777775 88999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCcchhhHHhhhhhhccccccccccceeeeeccCCCcchhHhHHHHHHHHHHHHHHHHhhhhh-
Q psy11547 167 PTILGWALIALAPSLPSSILPWIFTGRILTGLGSGMVGAPSRIYTAECSQPHLRGMLSSLASFGVSLGVLFEYSLGAFL- 245 (587)
Q Consensus 167 ~~~i~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l- 245 (587)
..++...+.+.++|+. .+.+.|.+.|+|.|+ .|...++-.|..|..+|+..+-.. ..+.+|.++...++...
T Consensus 152 ~t~v~~~is~~spnf~-----~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm 224 (528)
T KOG0253|consen 152 VTGVFGVISGASPNFA-----SLCVFRALWGFGVGG-LPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVM 224 (528)
T ss_pred HHHHHHHhhcCCCCee-----hhhHHHHHHhccCCC-ccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHH
Confidence 9999999999999999 999999999999999 799999999999999999887777 88999999999888766
Q ss_pred ---hHHHHHHHHHHHHHHHHHHhcccCCCchHHHhcCCHHHHHHHHHHHhCCCcchHH------HHhhHHHHHHH----H
Q psy11547 246 ---SWDTVAAISTIIPVLSIIAGCLMPESPSWLLSQGRKDACRNSLRRLRANNYDVEK------EVQGLYEFSKR----Q 312 (587)
Q Consensus 246 ---~wr~~f~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~----~ 312 (587)
||||.....+.+..+.....+.+||||++...+++++++.+.++++.+.|...-. .....++.++. .
T Consensus 225 ~~~gwr~~l~~~~~pl~~~a~f~~w~~ESpRf~~~~G~~~kAletL~kiArmNg~qlplgvl~~s~~~~~e~e~~~~~~~ 304 (528)
T KOG0253|consen 225 SNFGWRYLLFTSSTPLMFAARFLVWVYESPRFYLAKGDDYKALETLHKIARMNGKQLPLGVLESSAIDRQEQEESDLDDS 304 (528)
T ss_pred HhhhHHHHHHHHHhHHHHHHHHHhhcccCcchhhhcCChHHHHHHHHHHHHhcCCCCCcceeeeehhhhhhhhhhchhhh
Confidence 9999999988777777777777999999999999999999999998776543110 00000000000 0
Q ss_pred HHHhhhhhhHhHHhhhcCCchHHHHHHHHHHHHHHhccchhhHhcHHHHHHhc--------------------CCC-cch
Q psy11547 313 ETQKSRNFKETLAAIVEPACLKPFVILMLYFLIYQFSGVNPVTFYAVNIFKDA--------------------GAH-VNN 371 (587)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------g~~-~~~ 371 (587)
+.+..++.+.-...+..+.+++..+.....++...+..+..+... ..+++.. ..+ ...
T Consensus 305 ~~~a~ke~rg~~~nLlsp~lrkttlllw~iwfgnafsyyg~VLlt-telfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~d 383 (528)
T KOG0253|consen 305 KSSAAKEVRGGTTNLLSPKLRKTTLLLWRIWFGNAFSYYGSVLLT-TELFQSGDACPLYNRFLPTELETRANCPLSVAKD 383 (528)
T ss_pred hhccccccccchHhhcChHHHHHHHHHHHHHHhhHHHHHHHHHHH-HHHHhccCccccchhcchhHHHhhhcCCccchhH
Confidence 000111122233445567777777777777776555533333322 2222211 111 222
Q ss_pred HHHHHHHHHHHHHHHHhHHHhhcccCCchhhHhhhHHHHHHHHHHHHHHHhccCCCCCCCcCccchhHHHHHHHHHHHHH
Q psy11547 372 NLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAAS 451 (587)
Q Consensus 372 ~~~~~~~~~~~~i~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (587)
+.-.++..+..+.|.++.+++.||+|||+.+..++++.+++.+.+.... .........+..-.+.
T Consensus 384 YrdllitslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~---------------~rn~~tvllf~arafi 448 (528)
T KOG0253|consen 384 YRDLLITSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCK---------------TRNAYTVLLFTARAFI 448 (528)
T ss_pred HHHHHHHHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhc---------------CcchhHHHHHHHHHHH
Confidence 3456777889999999999999999999999999998888877766522 2223333344444444
Q ss_pred hccccccceeeeeccCCCCchhhHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhHHHHHHHHHHHHHHHhheecccCCCC
Q psy11547 452 TIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLTKEGTFLMYGCISLLGTIFFYVYLPETKNK 531 (587)
Q Consensus 452 ~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 531 (587)
..++ ...+.|..|++|+..|+++.|.+..++.+|+++.|.+. +........+..+++++++++.+.+.++-.|+|+|
T Consensus 449 sg~f-qvaYvYtPEVyPTavRatgvGtcSsmaRIggI~~p~iA--~~~e~s~sl~i~vy~~~~ilagIavcffPiEtkGR 525 (528)
T KOG0253|consen 449 SGAF-QVAYVYTPEVYPTAVRATGVGTCSSMARIGGIFSPVIA--MRAELSTSLPIFVYGALFILAGIAVCFFPIETKGR 525 (528)
T ss_pred hchh-eEEEEecCcccchhhhhcchhhhhhHHhhhhhhhhHHH--HHhccceeehHHHHHHHHHHHHHHheeeeeccCCC
Confidence 4444 45579999999999999999999999999999999988 44444555677778888888888777777788887
Q ss_pred C
Q psy11547 532 T 532 (587)
Q Consensus 532 ~ 532 (587)
.
T Consensus 526 ~ 526 (528)
T KOG0253|consen 526 S 526 (528)
T ss_pred C
Confidence 5
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=292.88 Aligned_cols=388 Identities=11% Similarity=0.076 Sum_probs=269.4
Q ss_pred HHHHHHHHHHhhhhhhccccccHHHHHhhhcCCCCCccCcchhHHHHHHHHHHHHHHHHhHHHhhhccchhHHHHHhhHH
Q psy11547 88 SLTLAVFANLGNVNTGMVFGFSAAATSQLISRDSPYRITSDESTWIASLSAIGTMVGCVLGGYMMDLVGRKMTLIITEVP 167 (587)
Q Consensus 88 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~i~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~ 167 (587)
+|.+..+++++.+.+++|....+...|.+.++ +|++..+.|++.+++.+++++++++.|+++||+|||+++..++++
T Consensus 6 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~---~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~ 82 (412)
T TIGR02332 6 FRRLIIFLFILFIFSFLDRINIGFAGLTMGKD---LGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVL 82 (412)
T ss_pred hhHHHHHHHHHHHHHHhhhhhHHHHHHhhHhh---cCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHH
Confidence 45577777888889999999999999988885 999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCcchhhHHhhhhhhccccccccccceeeeeccCCCcchhHhHHHHHHHHHHHHHHHHhhhhh--
Q psy11547 168 TILGWALIALAPSLPSSILPWIFTGRILTGLGSGMVGAPSRIYTAECSQPHLRGMLSSLASFGVSLGVLFEYSLGAFL-- 245 (587)
Q Consensus 168 ~~i~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l-- 245 (587)
+++++++++++++++ .+++.|+++|++.+...+....++.|++|+++|++++++++.+.++|.++++++++++
T Consensus 83 ~~~~~~~~~~~~~~~-----~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~ 157 (412)
T TIGR02332 83 WGIASTATMFATGPE-----SLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILA 157 (412)
T ss_pred HHHHHHHHHHhcCHH-----HHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999 9999999999999999999999999999999999999999999999999999988653
Q ss_pred --------hHHHHHHHHHHHHHHHHHHh-cccCCCchHHHhcCCHHHHHHHHHHHhCCCcchHHHHhhHHHHHHHHHHHh
Q psy11547 246 --------SWDTVAAISTIIPVLSIIAG-CLMPESPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQGLYEFSKRQETQK 316 (587)
Q Consensus 246 --------~wr~~f~~~~~~~~~~~~~~-~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (587)
+||+.|++.++++++..++. +++||+|+...- -..++.+...+.......+.+.... ... ++
T Consensus 158 ~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~-------~~~-~~ 228 (412)
T TIGR02332 158 LDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPDKAKW-LDEEDKKALKEMIDNDQLTLEQPEG-------AFA-HA 228 (412)
T ss_pred CCCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCcccCCC-CCHHHHHHHHHHHHhcccccccccc-------ccc-cc
Confidence 89999999888887665544 458998842100 0011111111111111000000000 000 00
Q ss_pred hhhhhHhHHhhhcCCchHHHHHHHHHHHHHHhccchhhHhcHHHHHHhc--CCC-cchHHHHHHHHHHHHHHHHhHHHhh
Q psy11547 317 SRNFKETLAAIVEPACLKPFVILMLYFLIYQFSGVNPVTFYAVNIFKDA--GAH-VNNNLAAVIMGIVRLIFTIASCIMM 393 (587)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~-~~~~~~~~~~~~~~~i~~~~~g~l~ 393 (587)
....+..++.++++. ++......+.....+..+..|.|.++++. +++ ...+.......++.+++.++.|+++
T Consensus 229 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~ 303 (412)
T TIGR02332 229 AMPQRSMLREIFTPA-----IMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHS 303 (412)
T ss_pred cccHHHHHHHhcChH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHh
Confidence 001111122222222 22222233333334566778899999874 444 4456677788889999999999999
Q ss_pred cccCCchhh-HhhhHHHHHHHHHHHHHHHhccCCCCCCCcCccchhHHHHHHHHHHHHHhccccccceeeeeccCCCCch
Q psy11547 394 KKMGRRSLT-FISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVR 472 (587)
Q Consensus 394 d~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r 472 (587)
||+++|+.. ....++..++. ++.. .. ...........+...+.. ...+..+....|.+|++.|
T Consensus 304 dr~~~r~~~~~~~~~~~~~~~-~~~~--~~------------~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~ 367 (412)
T TIGR02332 304 DRLKERKHHTALPYLFAAAGW-LLAS--AT------------DHNLIQLLGIIMASMGSF-SAMAIFWTTPDQSISLQAR 367 (412)
T ss_pred cccCccHHHHHHHHHHHHHHH-HHHH--hc------------CCHHHHHHHHHHHHHHhh-hhhhHHHhhcccccchHHH
Confidence 999977643 33333333322 2111 11 111111111112111111 1123333555788999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhHHHHHhhh-hhhHHHHHHHH
Q psy11547 473 GIVGGLTTCACHFFIFLTVKSYNMFQTHLT-KEGTFLMYGCI 513 (587)
Q Consensus 473 ~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g-~~~~~~~~~~~ 513 (587)
+++.|+.+...++|++++|.+.|.+.|..| |...+++.+++
T Consensus 368 ~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g~~~~~~~~~~~~ 409 (412)
T TIGR02332 368 AIAIAVINATGNIGSALSPFLIGILKDATGSFNSGLWFVAAL 409 (412)
T ss_pred HHHHHHHHHhhhhhhhhhhhhcccccccCCCCchhHHHHHHH
Confidence 999999999999999999999999999875 77777765554
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >KOG0252|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=278.08 Aligned_cols=435 Identities=15% Similarity=0.167 Sum_probs=313.9
Q ss_pred chHHHHHHHHHHHHhhhhhhccccccHHHHHhhhcCCCC-----CccCcchhHHHHHHHHHHHHHHHHhHHHhhhccchh
Q psy11547 84 KVSLSLTLAVFANLGNVNTGMVFGFSAAATSQLISRDSP-----YRITSDESTWIASLSAIGTMVGCVLGGYMMDLVGRK 158 (587)
Q Consensus 84 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~s~~~~g~i~s~~~l~~~i~~~~~g~l~dr~Grr 158 (587)
.|+ +...+.++.++.|.++||...++.+.|.+...... -+.+....+.+..+..+|..+|++++|+++||+|||
T Consensus 36 qw~-~fk~i~iAG~GfftDsYDlF~I~lVt~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK 114 (538)
T KOG0252|consen 36 QWK-HFKAIIIAGMGFFTDSYDLFSISLVTKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRK 114 (538)
T ss_pred hHH-HHHHHHHhhhhhcccchhhhhHHHHHHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcch
Confidence 455 88899999999999999999999998887654211 125566779999999999999999999999999999
Q ss_pred HHHHHhhHHHHHHHHHHHhcCCCCCC--cchhhHHhhhhhhccccccccccceeeeeccCCCcchhHhHHHHHHHHHHHH
Q psy11547 159 MTLIITEVPTILGWALIALAPSLPSS--ILPWIFTGRILTGLGSGMVGAPSRIYTAECSQPHLRGMLSSLASFGVSLGVL 236 (587)
Q Consensus 159 ~~l~~~~~~~~i~~~~~~~~~~~~~~--~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~ 236 (587)
+++...++++.++++++++....... ...++...|++.|+|.|+.+|.+.++.+|...++.||...+...+..++|.+
T Consensus 115 ~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~Gil 194 (538)
T KOG0252|consen 115 KVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGIL 194 (538)
T ss_pred hhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccceeEEEEEecchhHh
Confidence 99999999999999988876544322 1457888999999999999999999999999999999998888888888877
Q ss_pred HHHHhhhhh-------------------hHHHHHHHHHHHHHHHHHHhcccCCCchHHHhcC-CHHHHHHHHHHHhCCCc
Q psy11547 237 FEYSLGAFL-------------------SWDTVAAISTIIPVLSIIAGCLMPESPSWLLSQG-RKDACRNSLRRLRANNY 296 (587)
Q Consensus 237 i~~~l~~~l-------------------~wr~~f~~~~~~~~~~~~~~~~~~esp~~~~~~~-~~~~~~~~~~~~~~~~~ 296 (587)
.|.+++..+ -||..|.+.++++++.+...+.+|||+++..... +.+.+....++.. +.
T Consensus 195 aG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~Rl~M~Et~~Y~al~~~~~~~a~~d~~k~~--~~ 272 (538)
T KOG0252|consen 195 AGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLYFRLKMPETARYTALVSKKLKQAAGDMKKVL--SV 272 (538)
T ss_pred hccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHhhcCHhhhhhcccccc--cc
Confidence 777766654 4999999999999999999999999998752222 2222221111100 00
Q ss_pred chHHHHhhHHHHHHHHHHHhhhhhhHhHHhhhcCCchHHHHHHHHHHHHHHhccchhhHhcHHHHHHhcCCCcch--H--
Q psy11547 297 DVEKEVQGLYEFSKRQETQKSRNFKETLAAIVEPACLKPFVILMLYFLIYQFSGVNPVTFYAVNIFKDAGAHVNN--N-- 372 (587)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~-- 372 (587)
+.+.+.. .+......+.....+.+.+..+ .-+.++..+..++..-.. ++....+...+++..|+.... .
T Consensus 273 ~~~~~~~-----~~~~~~~~~~~~~~F~~~f~~~-hg~~Llgt~~~WFllDia-fy~~nL~~s~I~~~ig~~~~~~~~~~ 345 (538)
T KOG0252|consen 273 DIEAEST-----AESDVPPPSNSFGLFSRLFLRW-HGKHLLGTAGTWFLLDIA-FYGQNLFQSVIFSAIGVIPSANTYHE 345 (538)
T ss_pred ccchhhc-----cccCCCCcccccchHHHHHHHH-HHHHHHHHHHHHHhhhhh-hhccccHHHHHHHhhccCCCcchHHH
Confidence 0000000 0000001111222233333333 334445555555544333 455666677777776665221 1
Q ss_pred -----HHHHH-HHHHHHHHHHhHHHhhcccCCchhhHhhhHHHHHHHHHHHHHHHhccCCCCCCCcCccchhHHHHHHHH
Q psy11547 373 -----LAAVI-MGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMT 446 (587)
Q Consensus 373 -----~~~~~-~~~~~~i~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (587)
....+ .....++|..+..+++|++|||++.+.+++++++..+.++..... ........+...+
T Consensus 346 ~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~y~~-----------~~~~~Gf~v~y~l 414 (538)
T KOG0252|consen 346 LFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAGPYNQ-----------LENTIGFVVLYSL 414 (538)
T ss_pred HHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHhhHHHHHHHHHHHcCCccc-----------ccccCceeehHHH
Confidence 11122 222334466677778999999999999999999888887763221 0122334444555
Q ss_pred HHHHHhccccccceeeeeccCCCCchhhHHHHHHHHHHHHHHHHHHhhHHHHH-----hhhhhhHHHHHHHHHHHHHHHh
Q psy11547 447 FTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQT-----HLTKEGTFLMYGCISLLGTIFF 521 (587)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~-----~~g~~~~~~~~~~~~~~~~~~~ 521 (587)
..++..++.....+.+.+|.+|++.|++..|+....+-+|+.++...+.++.+ ..|.+.++++++++++++.++.
T Consensus 415 ~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T 494 (538)
T KOG0252|consen 415 TFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFT 494 (538)
T ss_pred HHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHhee
Confidence 56666777777778999999999999999999999999999999999999999 7888999999999998887765
Q ss_pred heecccCCCCCHHHHHHHH
Q psy11547 522 YVYLPETKNKTLQEIEEQF 540 (587)
Q Consensus 522 ~~~~~~~~~~~~~~~~~~~ 540 (587)
+++||++++++++++++.
T Consensus 495 -~l~pEtk~~~leei~~e~ 512 (538)
T KOG0252|consen 495 -LLIPETKGKSLEEISNEE 512 (538)
T ss_pred -EEeecccccCHHHhcChh
Confidence 566799999999875443
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-35 Score=296.72 Aligned_cols=395 Identities=13% Similarity=0.074 Sum_probs=270.5
Q ss_pred HHHHHHHHHHhhhhhhccccccHHHHHhhhcCCCCCccCcchhHHHHHHHHHHHHHHHHhHHHhhhccchhHHHHHhhHH
Q psy11547 88 SLTLAVFANLGNVNTGMVFGFSAAATSQLISRDSPYRITSDESTWIASLSAIGTMVGCVLGGYMMDLVGRKMTLIITEVP 167 (587)
Q Consensus 88 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~i~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~ 167 (587)
++.+.....++.+...++....+..+|.+.++ +|+|..+.|++.+.+.+++.+++++.|+++||+|||+++.++.++
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~ 97 (434)
T PRK11663 21 RRHILITMYLGYALFYFTRKSFNAAMPEMLAD---LGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIA 97 (434)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHhhHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHH
Confidence 33444556666777777777788889999885 999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCcchhhHHhhhhhhccccccccccceeeeeccCCCcchhHhHHHHHHHHHHHHHHHHhhhhh--
Q psy11547 168 TILGWALIALAPSLPSSILPWIFTGRILTGLGSGMVGAPSRIYTAECSQPHLRGMLSSLASFGVSLGVLFEYSLGAFL-- 245 (587)
Q Consensus 168 ~~i~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l-- 245 (587)
.+++.++++++++++ .+++.|++.|++.|..++...+++.|++|+++|++++++.+.+..+|.++++.+++++
T Consensus 98 ~~~~~~~~~~~~~~~-----~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~ 172 (434)
T PRK11663 98 TGIINILFGFSSSLW-----AFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIAL 172 (434)
T ss_pred HHHHHHHHHHHhHHH-----HHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998 8999999999999999999999999999999999999999999999999999988877
Q ss_pred --hHHHHHHHHHHHHHHHHHH-hcccCCCchHHHhcCCHHHHHHHHHHHhCCCcchHHHHhhHHHHHHHHHHHhhhhhhH
Q psy11547 246 --SWDTVAAISTIIPVLSIIA-GCLMPESPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQGLYEFSKRQETQKSRNFKE 322 (587)
Q Consensus 246 --~wr~~f~~~~~~~~~~~~~-~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (587)
+||+.|++.+++.++..+. .++++|+|++.......+...+. + +. .++.+.++.+.+.
T Consensus 173 ~~gw~~~f~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~-~-----------------~~-~~~~~~~~~~~~~ 233 (434)
T PRK11663 173 HYGWRYGMMIAGIIAIVVGLFLCWRLRDKPQAMGLPSVGEWRHDA-L-----------------EL-AQQQEGAGLSRKE 233 (434)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHcCCCHhhcCCCCcccccccc-c-----------------cc-chhccccCCChhh
Confidence 9999999988877655443 34478877542111100000000 0 00 0000000001111
Q ss_pred hH--HhhhcCCchHHHHHHHHHHHHHHhccchhhHhcHHHHHH-hcCCC-cchHHHHHHHHHHHHHHHHhHHHhhcccC-
Q psy11547 323 TL--AAIVEPACLKPFVILMLYFLIYQFSGVNPVTFYAVNIFK-DAGAH-VNNNLAAVIMGIVRLIFTIASCIMMKKMG- 397 (587)
Q Consensus 323 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~-~~~~~~~~~~~~~~~i~~~~~g~l~d~~g- 397 (587)
.. ..++++..+ ......+........+..+.|.++. +.|++ .+.........+++++++++.|++.||+.
T Consensus 234 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~ 308 (434)
T PRK11663 234 ILTKYVLLNPYIW-----LLSFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFN 308 (434)
T ss_pred hHHHHHhcChHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhcc
Confidence 11 123333222 2222222222234455667787774 46787 45566777788899999999999999983
Q ss_pred -Cchhh-HhhhHHHHHHHHHHHHHHHhccCCCCCCCcCccchhHHHHHHHHHHHHHhccccccceeeeeccCCCCchhhH
Q psy11547 398 -RRSLT-FISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIV 475 (587)
Q Consensus 398 -~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~ 475 (587)
+|+.. ....+...+..+.+.... . ..........+.++ .+..+........+.|.+|++.|+++
T Consensus 309 ~~r~~~~~~~~~~~~~~~~~~~~~~-~------------~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~g~~ 374 (434)
T PRK11663 309 GNRGPMNLIFAAGILLSVGSLWLMP-F------------ASYVMQAACFFTIG-FFVFGPQMLIGMAAAECSHKEAAGAA 374 (434)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHcc-c------------ccHHHHHHHHHHHH-HHHhhHHHHHHHHHHhcccHhhHHhH
Confidence 33332 222222222222111100 1 11111111111111 11111111222456799999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHhhhhhhHHHHHHHHHHHHHHHhheecccC
Q psy11547 476 GGLTTCACHFFIFLTVKSYNMFQTHLTKEGTFLMYGCISLLGTIFFYVYLPET 528 (587)
Q Consensus 476 ~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (587)
.|+.++..++|.+++|.+.|.+.|..|+...|.+.+++++++.+..+.+.+++
T Consensus 375 ~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~ 427 (434)
T PRK11663 375 TGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALLLLPFLNAQ 427 (434)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999988888887776655544443
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-34 Score=286.02 Aligned_cols=363 Identities=14% Similarity=0.072 Sum_probs=261.5
Q ss_pred HHHHHHhhhhhhccccccHHHHHhhhcCCCCCccCcchhHHHHHHHHHHHHHHHHhHHHhhhccchhHHHHHhhHHHHHH
Q psy11547 92 AVFANLGNVNTGMVFGFSAAATSQLISRDSPYRITSDESTWIASLSAIGTMVGCVLGGYMMDLVGRKMTLIITEVPTILG 171 (587)
Q Consensus 92 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~i~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~ 171 (587)
...+.++.+..........+.+|.+.++ +|.|..+.|++.+++.+++.++++++|+++||+|||+++..+.++.+++
T Consensus 11 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~---~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~ 87 (390)
T PRK03545 11 VVTLALAAFIFNTTEFVPVGLLSDIAQS---FHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIAS 87 (390)
T ss_pred HHHHHHHHHHHHhHHHHHHcchHHHHhH---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH
Confidence 3333444344334433455667888885 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCcchhhHHhhhhhhccccccccccceeeeeccCCCcchhHhHHHHHHHHHHHHHHHHhhhhh----hH
Q psy11547 172 WALIALAPSLPSSILPWIFTGRILTGLGSGMVGAPSRIYTAECSQPHLRGMLSSLASFGVSLGVLFEYSLGAFL----SW 247 (587)
Q Consensus 172 ~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l----~w 247 (587)
+++++++++++ .++++|+++|++.+...+...+++.|++|+++|++++++...+.++|.+++|++++.+ +|
T Consensus 88 ~~~~~~~~~~~-----~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw 162 (390)
T PRK03545 88 HVLSALAWNFT-----VLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGW 162 (390)
T ss_pred HHHHHHhccHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcH
Confidence 99999999999 9999999999999988899999999999999999999999999999999999998876 99
Q ss_pred HHHHHHHHHHHHHHHHHhcc-cCCCchHHHhcCCHHHHHHHHHHHhCCCcchHHHHhhHHHHHHHHHHHhhhhhhHhHHh
Q psy11547 248 DTVAAISTIIPVLSIIAGCL-MPESPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQGLYEFSKRQETQKSRNFKETLAA 326 (587)
Q Consensus 248 r~~f~~~~~~~~~~~~~~~~-~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (587)
|+.|++.++++++..+..+. +||.|+. +. ...++..+.
T Consensus 163 ~~~f~~~~~~~~l~~~~~~~~~~~~~~~-----~~------------------------------------~~~~~~~~~ 201 (390)
T PRK03545 163 RTTFLAIGGGALITLLLLIKLLPLLPSE-----HS------------------------------------GSLKSLPLL 201 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCCC-----Cc------------------------------------chHHHHHHH
Confidence 99999999888776555444 6665320 00 001122334
Q ss_pred hhcCCchHHHHHHHHHHHHHHhccchhhHhcHHHHHHh-cCCC-cchHHHHHHHHHHHHHHHHhHHHhhcccCCchhhHh
Q psy11547 327 IVEPACLKPFVILMLYFLIYQFSGVNPVTFYAVNIFKD-AGAH-VNNNLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFI 404 (587)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~-~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~~~~~~~ 404 (587)
++++..+......+... .. ......+.+.+..+ .|.+ ...+......+++.++++++.+++.||+++|... .
T Consensus 202 ~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~-~ 275 (390)
T PRK03545 202 FRRPALVSLYLLTVVVV----TA-HFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLL-I 275 (390)
T ss_pred HhCcHHHHHHHHHHHHH----HH-HHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHH-H
Confidence 55554332222211111 11 12223344444444 6777 4456677778889999999999999999987643 3
Q ss_pred hhHHHHHHHHHHHHHHHhccCCCCCCCcCccchhHHHHHHHHHHHHHhccccccceeeeeccCCCCchhhHHHHHHHHHH
Q psy11547 405 SSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACH 484 (587)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~ 484 (587)
+..+..++...+.. .. .+.+.......+++.+. ....+.....+.+..| +.|+++.|+.+...+
T Consensus 276 ~~~~~~~~~~~l~~--~~------------~~~~~~~~~~~l~g~~~-~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~ 339 (390)
T PRK03545 276 AIALLLVCLLLLLP--AA------------NSEWHLSVLSIFWGIAI-MCIGLAMQVKVLKLAP-DATDVAMALFSGIFN 339 (390)
T ss_pred HHHHHHHHHHHHHH--Hh------------chHHHHHHHHHHHHHHH-hcchHHHHHHHHHhCC-CcHHHHHHHHHHHHH
Confidence 33333333332221 11 12233333333333332 2333333466667766 578999999999999
Q ss_pred HHHHHHHHhhHHHHHhhhhhhHHHHHHHHHHHHHHHhheec
Q psy11547 485 FFIFLTVKSYNMFQTHLTKEGTFLMYGCISLLGTIFFYVYL 525 (587)
Q Consensus 485 ~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 525 (587)
+|..+||.+.|.+.|..|++..|.+.+++.+++.++.+...
T Consensus 340 ~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 380 (390)
T PRK03545 340 IGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSILIF 380 (390)
T ss_pred HHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999988888888777665544
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-34 Score=287.58 Aligned_cols=381 Identities=18% Similarity=0.168 Sum_probs=270.1
Q ss_pred HHHHHHHHHHhhhhhhccccccHHHHHhhhcCCCCCccCcchhHHHHHHHHHHHHHHHHhHHHhhhccchhHHHHHhhHH
Q psy11547 88 SLTLAVFANLGNVNTGMVFGFSAAATSQLISRDSPYRITSDESTWIASLSAIGTMVGCVLGGYMMDLVGRKMTLIITEVP 167 (587)
Q Consensus 88 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~i~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~ 167 (587)
+|.....+.++.+.++++....+++.|.+.++ +|++..+.+++.+++.++..+++++.|+++||+|||++++++.++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~ 86 (405)
T TIGR00891 10 QWNAFSAAWLGWLLDAFDFFLVALVLAEVAGE---FGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVL 86 (405)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 66777888899999999999999999999885 999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCcchhhHHhhhhhhccccccccccceeeeeccCCCcchhHhHHHHHHHHHHHHHHHHhhhhh--
Q psy11547 168 TILGWALIALAPSLPSSILPWIFTGRILTGLGSGMVGAPSRIYTAECSQPHLRGMLSSLASFGVSLGVLFEYSLGAFL-- 245 (587)
Q Consensus 168 ~~i~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l-- 245 (587)
.++++++++++++++ .+++.|++.|++.+...+...+++.|++|+++|++++++...+..+|.++++.++..+
T Consensus 87 ~~~~~~~~~~~~~~~-----~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~ 161 (405)
T TIGR00891 87 FSAGTLACGFAPGYI-----TMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVP 161 (405)
T ss_pred HHHHHHHHHHhccHH-----HHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999 9999999999999999999999999999999999999999999999999999988876
Q ss_pred --h--HHHHHHHHHHHHHHHHHHhcccCCCchHHHhcCCHHHHHHHHHHHhCCCcchHHHHhhHHHHHHHHHHHhhhhhh
Q psy11547 246 --S--WDTVAAISTIIPVLSIIAGCLMPESPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQGLYEFSKRQETQKSRNFK 321 (587)
Q Consensus 246 --~--wr~~f~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (587)
+ ||+.|++.++..++.++....+||++++...+++.++..+..++..+...... . ..+....
T Consensus 162 ~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~---~~~~~~~ 227 (405)
T TIGR00891 162 VWGDGWRALFFISILPIIFALWLRKNIPEAEDWKEKHAGKALVRTMVDILYGGEHRIA-----------N---IVMTLAA 227 (405)
T ss_pred hcCccHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHhhhhhhhhhHHHHHhccchhhh-----------h---hhhhhhH
Confidence 4 99999987777666666555688887553322221111111111111000000 0 0000000
Q ss_pred HhHHhhhcCCchHHHHHHHHHHHHHHhccchhhHhcHHHHHH-hcCCC-cchHHHHHHHHHHHHHHHHhHHHhhcccCCc
Q psy11547 322 ETLAAIVEPACLKPFVILMLYFLIYQFSGVNPVTFYAVNIFK-DAGAH-VNNNLAAVIMGIVRLIFTIASCIMMKKMGRR 399 (587)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~-~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~~ 399 (587)
...+ ..+..+...........+.... ......+.|.++. +.|.+ .+.+.......++.+++.++.+++.||++||
T Consensus 228 ~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~ 304 (405)
T TIGR00891 228 AMVQ--SAGKRWPTFVYLVVLVLFANLY-SHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRR 304 (405)
T ss_pred Hhhh--hhhhhhHHHHHHHHHHHHHHHH-HhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCch
Confidence 0000 0011111112222222221221 2233445555554 46777 4556677778889999999999999999999
Q ss_pred hhhHhhhHHHHHHHHHHHHHHHhccCCCCCCCcCccchhHHHHHHHHHHHHHhccccccceeeeeccCCCCchhhHHHHH
Q psy11547 400 SLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLT 479 (587)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~ 479 (587)
+.+.++.++..+....+.. .. ...+...+..++.. ....+..+....++.|.+|++.|+++.|+.
T Consensus 305 ~~~~~~~~~~~~~~~~~~~--~~------------~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 369 (405)
T TIGR00891 305 KAYVCSLLAGQLLIIPVFA--IG------------ANVAVLGLGLFFQQ-MLVQGIWGILPKHLGEYFPTDQRAAGLGFT 369 (405)
T ss_pred hhhHHHHHHHHHHHHHHHH--hC------------CchHHHHHHHHHHH-HHHccchhhHHHHHhhhCCcchhHHHhhHH
Confidence 9887776654332222211 01 12222222222222 223333344457889999999999999999
Q ss_pred HHHHHHHHHHHHHhhHHHHHhhh-hhhHHH
Q psy11547 480 TCACHFFIFLTVKSYNMFQTHLT-KEGTFL 508 (587)
Q Consensus 480 ~~~~~~g~~i~~~~~g~l~~~~g-~~~~~~ 508 (587)
+.+..+|..++|.+.|.+.|..| +...+.
T Consensus 370 ~~~~~~g~~~g~~~~g~l~~~~g~~~~~~~ 399 (405)
T TIGR00891 370 YQLGNLGGALAPIIGALLAQRLDEYGTALA 399 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccchhHH
Confidence 99999999999999999999988 654444
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-35 Score=301.26 Aligned_cols=390 Identities=14% Similarity=0.049 Sum_probs=270.0
Q ss_pred HHHHHHHHHHhhhhhhccccccHHHHHhhhcCCCCCccCcchhHHHHHHHHHHHHHHHHhHHHhhhccchhHHHHHhhHH
Q psy11547 88 SLTLAVFANLGNVNTGMVFGFSAAATSQLISRDSPYRITSDESTWIASLSAIGTMVGCVLGGYMMDLVGRKMTLIITEVP 167 (587)
Q Consensus 88 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~i~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~ 167 (587)
.+.+...++++++....++..+++.+|.+.++ +|++..+.|++.+++.++++++++++|+++||+|||+++.+++++
T Consensus 27 ~~~i~~~~~~~~~~~y~~r~~~~~~~~~i~~~---~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~ 103 (467)
T PRK09556 27 FMQSYLVVFIGYLTMYLIRKNFKAAQNDMIST---YGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLIL 103 (467)
T ss_pred HHHHHHHHHHHHHHHHHHhcChhhhhHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHH
Confidence 55566777778888888999999999999985 999999999999999999999999999999999999999999888
Q ss_pred HHHHHHHHHh-----cCCCCCCcchhhHHhhhhhhccccccccccceeeeeccCCCcchhHhHHHHHHHHHHHHHHHHhh
Q psy11547 168 TILGWALIAL-----APSLPSSILPWIFTGRILTGLGSGMVGAPSRIYTAECSQPHLRGMLSSLASFGVSLGVLFEYSLG 242 (587)
Q Consensus 168 ~~i~~~~~~~-----~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~ 242 (587)
++++.++.++ +++++ .+++.|+++|++.+...+...+++.||+|+++||++++++..+.++|.+++++++
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~-----~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~ 178 (467)
T PRK09556 104 SAICMLGFGASLGSGSVSLG-----LMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVA 178 (467)
T ss_pred HHHHHHHHHHHHhcccchHH-----HHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHH
Confidence 8887777665 57787 9999999999999999999999999999999999999999999999999999887
Q ss_pred hhh-------hHHHHHHHHHHHHHHHHHHhcc-cCCCchHHHhcCCHHHHHHHHHHHhCCCcchHHHHhhHHHHHHHHHH
Q psy11547 243 AFL-------SWDTVAAISTIIPVLSIIAGCL-MPESPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQGLYEFSKRQET 314 (587)
Q Consensus 243 ~~l-------~wr~~f~~~~~~~~~~~~~~~~-~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (587)
.++ +||..|.+.+++.++..++.++ .+++|+..... +.++ . ... ....+. +..+
T Consensus 179 ~~~~~~~~~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~~~~~~-~~~~---~---~~~-~~~~~~----------~~~~ 240 (467)
T PRK09556 179 LWGANYFFDGHVIGMFIFPSIIALIIGFIGLRYGSDSPEELGWG-KAEE---I---FGE-PISEED----------KETE 240 (467)
T ss_pred HHHHHhhccCcchhHHHHHHHHHHHHHHHHHHhCCCChhhcCCC-Chhh---c---ccC-ccchhh----------hccc
Confidence 644 4899998888887766555444 56665421101 0000 0 000 000000 0000
Q ss_pred HhhhhhhH-hH-HhhhcCCchHHHHHHHHHHHHHHhccchhhHhcHHHHHHh-cCCC-cchHHHHHHHHHHHHHHHHhHH
Q psy11547 315 QKSRNFKE-TL-AAIVEPACLKPFVILMLYFLIYQFSGVNPVTFYAVNIFKD-AGAH-VNNNLAAVIMGIVRLIFTIASC 390 (587)
Q Consensus 315 ~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~-~~~~~~~~~~~~~~~i~~~~~g 390 (587)
+++..... .. ..++++..+. ..+..+...........+.|.++++ .|++ .+.+.......++.+++.++.|
T Consensus 241 ~~~~~~~~~~~~~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G 315 (467)
T PRK09556 241 STDMTKWQIFVEYVLKNPVIWL-----LCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWG 315 (467)
T ss_pred cccCcHHHHHHHHHHcChHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000011 11 1344443332 2222222222344567788877754 7887 4556677778888999999999
Q ss_pred HhhcccCCchhhHhhhHHHHHHHHHHHHHHHhccCCCCCCCcCccchhHHHHHHHHHHHHHhccccccceeeeeccCCCC
Q psy11547 391 IMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTK 470 (587)
Q Consensus 391 ~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 470 (587)
+++||++||+.+.....+..++..++.. .. ..+.+...+..++++.+ ..+..........|.+|++
T Consensus 316 ~lsDr~g~r~~~~~~~~~~~~~~~~~~~--~~-----------~~~~~~~~~~~~~~G~~-~~~~~~~~~~~~~~~~p~~ 381 (467)
T PRK09556 316 WLSDLANGRRALVACIALALIIFTLGVY--QH-----------ATSEYMYLASLFALGFL-VFGPQLLIGVAAVGFVPKK 381 (467)
T ss_pred HHHHHHCCCchHHHHHHHHHHHHHHHHH--Hh-----------cCcHHHHHHHHHHHHHH-HhhHHHHHHHHHHhhcchh
Confidence 9999999988766544433332222211 11 11222222222222222 1121111124566999999
Q ss_pred chhhHHHHHHHHHHH-HHHHHHHhhHHHHH------------hhhhhhHHHHHHHHHHHHHHHhh
Q psy11547 471 VRGIVGGLTTCACHF-FIFLTVKSYNMFQT------------HLTKEGTFLMYGCISLLGTIFFY 522 (587)
Q Consensus 471 ~r~~~~g~~~~~~~~-g~~i~~~~~g~l~~------------~~g~~~~~~~~~~~~~~~~~~~~ 522 (587)
.+|++.|+.+..+++ |.+++|.+.|.+.| ..||...|.+.+++++++.+..+
T Consensus 382 ~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~ 446 (467)
T PRK09556 382 AIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMA 446 (467)
T ss_pred hHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHHH
Confidence 999999999999997 77999999999999 57888899888777777665544
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-33 Score=284.76 Aligned_cols=380 Identities=16% Similarity=0.130 Sum_probs=247.5
Q ss_pred HHHHHHHHHHhhhhhhccccccHHHHHhhhcCCCCCccCcchhHHHH---HHHHHHHHHHHHhHHHhhhccchhHHHHHh
Q psy11547 88 SLTLAVFANLGNVNTGMVFGFSAAATSQLISRDSPYRITSDESTWIA---SLSAIGTMVGCVLGGYMMDLVGRKMTLIIT 164 (587)
Q Consensus 88 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~i~---s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~ 164 (587)
++..+..++++.+.+.+|....+...|.+.++....+.+..+.+.+. +...++..++++++|+++||+|||+++..+
T Consensus 20 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~~ 99 (432)
T PRK10406 20 RIWAIVGASSGNLVEWFDFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLIS 99 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 44466667788999999999999999998886111134555544444 444555559999999999999999999999
Q ss_pred hHHHHHHHHHHHhcCCCCC---CcchhhHHhhhhhhccccccccccceeeeeccCCCcchhHhHHHHHHHHHHHHHHHHh
Q psy11547 165 EVPTILGWALIALAPSLPS---SILPWIFTGRILTGLGSGMVGAPSRIYTAECSQPHLRGMLSSLASFGVSLGVLFEYSL 241 (587)
Q Consensus 165 ~~~~~i~~~~~~~~~~~~~---~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l 241 (587)
+++++++++++++++++.. ..+..++++|+++|++.|+.++...+++.|++|+++|+++.++.+.+...|.++++.+
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~ 179 (432)
T PRK10406 100 VCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLV 179 (432)
T ss_pred HHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998751 0122588999999999999999999999999999999999999988888888887765
Q ss_pred hhh------------hhHHHHHHHHHHHHHHHHHHhcccCCCchHHHhcCCHHHHHHHHHHHhCCCcchHHHHhhHHHHH
Q psy11547 242 GAF------------LSWDTVAAISTIIPVLSIIAGCLMPESPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQGLYEFS 309 (587)
Q Consensus 242 ~~~------------l~wr~~f~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (587)
... .+||++|++.++++++.+++...+||+|++..++
T Consensus 180 ~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~~~~~~~~~e~~~~~~~~------------------------------- 228 (432)
T PRK10406 180 VVVLQQTLEDAELREWGWRIPFALGAVLAVVALWLRRQLDETSQQETRA------------------------------- 228 (432)
T ss_pred HHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHhcCCCCchHHHhh-------------------------------
Confidence 432 2899999998888877666555588876431000
Q ss_pred HHHHHHhhhhhhHhHHhhhcCCchHHHHHHHHHHHHHHhccchhhHhcHHHHHHh-cCCC-cchHHHHHHHHHHHHHHHH
Q psy11547 310 KRQETQKSRNFKETLAAIVEPACLKPFVILMLYFLIYQFSGVNPVTFYAVNIFKD-AGAH-VNNNLAAVIMGIVRLIFTI 387 (587)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~-~~~~~~~~~~~~~~~i~~~ 387 (587)
. .+..+..+.++++.. +.......+.....++....|.|.++.+ .|++ .+......+..+...++.+
T Consensus 229 ------~-~~~~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~ 297 (432)
T PRK10406 229 ------L-KEAGSLKGLWRNRRA----FIMVLGFTAAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQP 297 (432)
T ss_pred ------h-cccccHHHHHhhHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 0 000122333333221 1111111222122344456677777754 6776 3445556666677788888
Q ss_pred hHHHhhcccCCchhhHhhhHHHHHHHHHHHHHHHhccCCCCCCCcCccchhHHHHHHHHHHHHHhccccccceeeeeccC
Q psy11547 388 ASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVY 467 (587)
Q Consensus 388 ~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (587)
+.|+++||++||+.+.++.++.++....+...... .......+....+....... ..+..+.+.+|.+
T Consensus 298 ~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~e~f 365 (432)
T PRK10406 298 LIGALSDKIGRRTSMLCFGSLAALFTVPILSALQN-----------VSSPYAAFGLVMCALLIVSF-YTSISGILKAEMF 365 (432)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHc-----------CCcHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHC
Confidence 99999999999987766555433332211111111 01112111111111111111 1223347789999
Q ss_pred CCCchhhHHHHHHHHHHH-HHHHHHHhhHHHHHhhh-hhhHHHHHHHHHHHHHHHhh
Q psy11547 468 PTKVRGIVGGLTTCACHF-FIFLTVKSYNMFQTHLT-KEGTFLMYGCISLLGTIFFY 522 (587)
Q Consensus 468 p~~~r~~~~g~~~~~~~~-g~~i~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~ 522 (587)
|++.|+++.|+.+..+++ .+...|.+.+. .+..| +...++..+++.+++.+..+
T Consensus 366 p~~~r~t~~g~~~~~g~~~~g~~~p~~~~~-l~~~g~~~~~~~~~~~~~~i~~~~~~ 421 (432)
T PRK10406 366 PAQVRALGVGLSYAVANALFGGSAEYVALS-LKSIGMETAFFWYVTLMAVVAFLVSL 421 (432)
T ss_pred CCCccchhhhHHHHHHHHHHHhHHHHHHHH-HHHhCCCcHHHHHHHHHHHHHHHHHH
Confidence 999999999999988765 34457777774 45556 33344545455555544433
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-34 Score=288.87 Aligned_cols=374 Identities=18% Similarity=0.196 Sum_probs=275.8
Q ss_pred HHHHHHHHHHHhhhhhhccccccHHHHHhhhcCCCCCccCcchhHHHHHHHHHHHHHHHHhHHHhhhccchhHHHHHhhH
Q psy11547 87 LSLTLAVFANLGNVNTGMVFGFSAAATSQLISRDSPYRITSDESTWIASLSAIGTMVGCVLGGYMMDLVGRKMTLIITEV 166 (587)
Q Consensus 87 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~i~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~ 166 (587)
++|....++++..+.++++....+...|.+.++ +|.++.+.|++.+.+.++..+++++.|+++||+|||+++..+.+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~ 88 (406)
T PRK11551 12 RLALTIGLCFLVALLEGLDLQSAGVAAPRMAQE---FGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVA 88 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHH
Confidence 478888888889999999999999999999885 99999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCcchhhHHhhhhhhccccccccccceeeeeccCCCcchhHhHHHHHHHHHHHHHHHHhhhhh-
Q psy11547 167 PTILGWALIALAPSLPSSILPWIFTGRILTGLGSGMVGAPSRIYTAECSQPHLRGMLSSLASFGVSLGVLFEYSLGAFL- 245 (587)
Q Consensus 167 ~~~i~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l- 245 (587)
+..++.++++++++++ .+++.|+++|++.+...+...+++.|++|+++|++++++.+.+..+|..+++.++..+
T Consensus 89 ~~~~~~~~~~~~~~~~-----~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~ 163 (406)
T PRK11551 89 LFGLFSLATAQAWDFP-----SLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAA 163 (406)
T ss_pred HHHHHHHHHHHhccHH-----HHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 9999999999999998 9999999999999999999999999999999999999999999999999999988766
Q ss_pred ---hHHHHHHHHHHHHHHHHHHh-cccCCCchHHHhcCCHHHHHHHHHHHhCCCcchHHHHhhHHHHHHHHHHHhhhhhh
Q psy11547 246 ---SWDTVAAISTIIPVLSIIAG-CLMPESPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQGLYEFSKRQETQKSRNFK 321 (587)
Q Consensus 246 ---~wr~~f~~~~~~~~~~~~~~-~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (587)
+||+.|++.+++.++..++. .++||+|++...+.+.++.. .
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--------------------------------~--- 208 (406)
T PRK11551 164 GDAAWRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAGKQRA--------------------------------P--- 208 (406)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhccCcchhhh--------------------------------h---
Confidence 89999999887766655444 34888875432211100000 0
Q ss_pred HhHHhhhcCCchHHHHHHHHHHHHHHhccchhhHhcHHHHHHhcCCC-cchHHHHHHHHHHHHHHHHhHHHhhcccCCch
Q psy11547 322 ETLAAIVEPACLKPFVILMLYFLIYQFSGVNPVTFYAVNIFKDAGAH-VNNNLAAVIMGIVRLIFTIASCIMMKKMGRRS 400 (587)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~~~ 400 (587)
.....++.+..++ .... ....+......+....+.|.++++.|++ ...+.......++.+++.++.|++.||++||+
T Consensus 209 ~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~ 286 (406)
T PRK11551 209 VLRALFGEGRATA-TLLL-WISYFFTLIVLYFLLNWLPSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRR 286 (406)
T ss_pred hHHHHhhhhhhhH-HHHH-HHHHHHHHHHHHHHHHHHHHHHHhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 0000011111001 1111 1111111222344556778888888887 55667777888899999999999999999999
Q ss_pred hhHhhhHHHHHHHHHHHHHHHhccCCCCCCCcCccchhHHHHHHHHHHHHHhccccccceeeeeccCCCCchhhHHHHHH
Q psy11547 401 LTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTT 480 (587)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~ 480 (587)
.+..+.+...++.+.+.. ....+...+...+.+. ...+..+..+++..|.+|++.|+++.|+.+
T Consensus 287 ~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~ 350 (406)
T PRK11551 287 VVLLIYAGILASLAALAA---------------APSFAGMLLAGFAAGL-FVVGGQSVLYALAPLFYPTQVRGTGVGAAV 350 (406)
T ss_pred HHHHHHHHHHHHHHHHHh---------------cCcHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHcchhhhhhhhhHHH
Confidence 887766655555444333 1122222222222222 222334455578899999999999999999
Q ss_pred HHHHHHHHHHHHhhHHHHHhhhhh-hHHHHHHHHHHHHHHHh
Q psy11547 481 CACHFFIFLTVKSYNMFQTHLTKE-GTFLMYGCISLLGTIFF 521 (587)
Q Consensus 481 ~~~~~g~~i~~~~~g~l~~~~g~~-~~~~~~~~~~~~~~~~~ 521 (587)
....+|.+++|.+.|.+.++.+.. ..++....+.+++.+..
T Consensus 351 ~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (406)
T PRK11551 351 AVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAA 392 (406)
T ss_pred HhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999875543 34444444444444433
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-33 Score=284.13 Aligned_cols=388 Identities=16% Similarity=0.151 Sum_probs=255.2
Q ss_pred HHHHHHHHHHhhhhhhccccccHHHHHhhhcCCCCC--ccCcchhHHHH-----HHHHHHHHHHHHhHHHhhhccchhHH
Q psy11547 88 SLTLAVFANLGNVNTGMVFGFSAAATSQLISRDSPY--RITSDESTWIA-----SLSAIGTMVGCVLGGYMMDLVGRKMT 160 (587)
Q Consensus 88 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~s~~~~g~i~-----s~~~l~~~i~~~~~g~l~dr~Grr~~ 160 (587)
++.......++++.+++|....+.+.|.+..+ ++ +.++. .+++. ++..++..+++++.|+++||+|||++
T Consensus 20 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr~~ 96 (438)
T PRK09952 20 ARRAALGSFAGAVVDWYDFLLYGITAALVFNR--EFFPQVSPA-MGTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRKRM 96 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hcCCCCCcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccHHH
Confidence 34466777788999999999988887754322 13 45555 45553 35567788999999999999999999
Q ss_pred HHHhhHHHHHHHHHHHhcCCCCCCc---chhhHHhhhhhhccccccccccceeeeeccCCCcchhHhHHHHHHHHHHHHH
Q psy11547 161 LIITEVPTILGWALIALAPSLPSSI---LPWIFTGRILTGLGSGMVGAPSRIYTAECSQPHLRGMLSSLASFGVSLGVLF 237 (587)
Q Consensus 161 l~~~~~~~~i~~~~~~~~~~~~~~~---~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i 237 (587)
++++.++++++++++++++++.... ++.++++|+++|++.|+.++....++.|++|+++|++..+..+.+..+|.++
T Consensus 97 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l 176 (438)
T PRK09952 97 LMLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLL 176 (438)
T ss_pred HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHH
Confidence 9999999999999999999986110 1137789999999999999999999999999999999999999999999998
Q ss_pred HHHhhhh------------hhHHHHHHHHHHHHHHHHHHhcccCCCchHHHhcCCHHHHHHHHHHHhCCCcchHHHHhhH
Q psy11547 238 EYSLGAF------------LSWDTVAAISTIIPVLSIIAGCLMPESPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQGL 305 (587)
Q Consensus 238 ~~~l~~~------------l~wr~~f~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (587)
+..+... .+||++|++.+++.++...+...+||+|++...+++.++.
T Consensus 177 ~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~~~l~~~~~es~~~~~~~~~~~~~--------------------- 235 (438)
T PRK09952 177 STGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLIALWVRNGMEESAEFEQQQHEQAAA--------------------- 235 (438)
T ss_pred HHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHhhcccc---------------------
Confidence 8765543 2899999998887766555444588988653222110000
Q ss_pred HHHHHHHHHHhhhhhhHhHH-hhhcCCchHHHHHHHHHHHHHHhccchhhHhcHHHHHH-hcCCCcc-hHHHHHHHHHHH
Q psy11547 306 YEFSKRQETQKSRNFKETLA-AIVEPACLKPFVILMLYFLIYQFSGVNPVTFYAVNIFK-DAGAHVN-NNLAAVIMGIVR 382 (587)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~-~~~~~~~~~~~~ 382 (587)
+ . .....+ .+++++.+. ......++ .....+....+.|.+++ ..|++.. ......+.++..
T Consensus 236 ----------~-~-~~~~~~~l~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~ 299 (438)
T PRK09952 236 ----------K-K-RIPVIEALLRHPGAFL---KIIALRLC-ELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLS 299 (438)
T ss_pred ----------c-c-cCCHHHHHHHchHHHH---HHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 0 0 000111 222222221 11111221 12223345556666664 3566532 223444556677
Q ss_pred HHHHHhHHHhhcccCCchhhHhhhHHHHHHHHHHHHHHHhccCCCCCCCcCccchhHHHHHHHHHHHHHhccccccceee
Q psy11547 383 LIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVM 462 (587)
Q Consensus 383 ~i~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (587)
+++.++.|+++||+|||+.+..+.++..++.+.+...... ....+..+....+...+.... .+..+++
T Consensus 300 ~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~l~~~~~~~~-~~~~~~~ 367 (438)
T PRK09952 300 CLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEA-----------QSIFWIVFFSIMLANIAHDMV-VCVQQPM 367 (438)
T ss_pred HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHc-----------CChHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 8888999999999999998877766554443322221111 011222222222222222222 3334578
Q ss_pred eeccCCCCchhhHHHHHHHHHH-HHHHHHHHhhHHHHHhhh--hhhHHHHHHHHHHHHHHHhheecccC
Q psy11547 463 IGEVYPTKVRGIVGGLTTCACH-FFIFLTVKSYNMFQTHLT--KEGTFLMYGCISLLGTIFFYVYLPET 528 (587)
Q Consensus 463 ~~~~~p~~~r~~~~g~~~~~~~-~g~~i~~~~~g~l~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (587)
+.|.+|++.|+++.|+.+.... +++.++|.+.+.+.+..+ |...+...+++.+++.+.. +..+++
T Consensus 368 ~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~-~~~~~~ 435 (438)
T PRK09952 368 FTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTA-LLMKDN 435 (438)
T ss_pred HHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHH-HHcccc
Confidence 8999999999999999776655 889999999999988543 5566666666666655544 334543
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-33 Score=289.03 Aligned_cols=407 Identities=16% Similarity=0.143 Sum_probs=273.5
Q ss_pred HHHHHHHHHHhhhhhhccccccHHHHHhhhcCCCCCccCcchhHHHHHHHHHHHHHHHHhHHHhhhccchhHHHHHhhHH
Q psy11547 88 SLTLAVFANLGNVNTGMVFGFSAAATSQLISRDSPYRITSDESTWIASLSAIGTMVGCVLGGYMMDLVGRKMTLIITEVP 167 (587)
Q Consensus 88 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~i~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~ 167 (587)
++.....+.++.+.++++....++.+|.+.++ +|++..+.+++.+.+.+++.+++++.|+++||+|||++++.+.++
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~---~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~ 94 (496)
T PRK03893 18 QWKAFSAAWLGYLLDGFDFVLITLVLTEVQGE---FGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVL 94 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 55567777788888999999999999999885 999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCcchhhHHhhhhhhccccccccccceeeeeccCCCcchhHhHHHHHHHHHHHHHHHHhhhhh--
Q psy11547 168 TILGWALIALAPSLPSSILPWIFTGRILTGLGSGMVGAPSRIYTAECSQPHLRGMLSSLASFGVSLGVLFEYSLGAFL-- 245 (587)
Q Consensus 168 ~~i~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l-- 245 (587)
.+++.++++++++++ .+++.|++.|++.+...+....++.|++|+++|++++++...+..+|.++++.+++.+
T Consensus 95 ~~~~~~~~~~~~~~~-----~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~ 169 (496)
T PRK03893 95 FSVGTLACGFAPGYW-----TLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVP 169 (496)
T ss_pred HHHHHHHHHHHhHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999998 9999999999999999999999999999999999999999999999999999999877
Q ss_pred --hHHHHHHHHHHHHHHHHHHhcccCCCchHHHhcCCHHHHHHHHHHHhCCCcchHHHHhhHH---HHHHHHHHHhhhhh
Q psy11547 246 --SWDTVAAISTIIPVLSIIAGCLMPESPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQGLY---EFSKRQETQKSRNF 320 (587)
Q Consensus 246 --~wr~~f~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 320 (587)
+||+.|++..+..++.++....+||++++...+++.++..+..+.....+........... ..............
T Consensus 170 ~~~w~~~f~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (496)
T PRK03893 170 VWGWRALFFIGILPIIFALWLRKNLPEAEDWKEKHAGKAPVRTMVDILYRGEHRIINILLTLAAAAALWFCFAGNLQNAA 249 (496)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhccccccchhHHHHHhcchhHHHHHHHHHHHHHHHHHHHHhhhcchh
Confidence 8999998865555544444444788765432221111111111100000000000000000 00000000000000
Q ss_pred h----------HhHH-hhhcCCchHHHHHHHHHHHHHHhccchhhHhcHHHHHH-hcCCC-cchHHHHHHHHHHHHHHHH
Q psy11547 321 K----------ETLA-AIVEPACLKPFVILMLYFLIYQFSGVNPVTFYAVNIFK-DAGAH-VNNNLAAVIMGIVRLIFTI 387 (587)
Q Consensus 321 ~----------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~-~~~~~~~~~~~~~~~i~~~ 387 (587)
. .... .......+.+.........+..+........+.|.+++ +.|++ .+.+.......++.+++.+
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~ 329 (496)
T PRK03893 250 IVAVLGLLCAAIFISFMVQSSGKRWPTGVMLMVVVLFAFLYSWPIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCC 329 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhccchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 0 0000 00000111111111122222222222234566777875 67887 5567778888899999999
Q ss_pred hHHHhhcccCCchhhHhhhHHHHHHHHHHHHHHHhccCCCCCCCcCccchhHHHHHHHHHHHHHhccccccceeeeeccC
Q psy11547 388 ASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVY 467 (587)
Q Consensus 388 ~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (587)
+.|++.||++||+.+..+.++..+..+.+.. . ................+...+..+...+++.|.+
T Consensus 330 ~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~---~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (496)
T PRK03893 330 VGGFLGDWLGTRKAYVCSLLISQLLIIPVFA---I-----------GGANVWVLGLLLFFQQMLGQGISGLLPKLIGGYF 395 (496)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHHhh---c-----------cccHHHHHHHHHHHHHHHhcccchhhHHHHHhhC
Confidence 9999999999999887766555544433222 1 0112222222222222223333344446788999
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhHHHHHHHHHHH
Q psy11547 468 PTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLTKEGTFLMYGCISLL 516 (587)
Q Consensus 468 p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~ 516 (587)
|++.|++++|+.+....+|..++|.+.|.+.|..|+...+...++++.+
T Consensus 396 ~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~~~~~~~~ 444 (496)
T PRK03893 396 DTEQRAAGLGFTYNVGALGGALAPILGALIAQRLDLGTALASLSFSLTF 444 (496)
T ss_pred CHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCChHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999988777655544433
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-33 Score=285.63 Aligned_cols=368 Identities=16% Similarity=0.138 Sum_probs=265.4
Q ss_pred HHHHHHHHHHhhhhhhccccccHHHHHhhhcCCCCCccCcchhHHHHHHHHHHHHHHHHhHHHhhhccchhHHHHHhhHH
Q psy11547 88 SLTLAVFANLGNVNTGMVFGFSAAATSQLISRDSPYRITSDESTWIASLSAIGTMVGCVLGGYMMDLVGRKMTLIITEVP 167 (587)
Q Consensus 88 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~i~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~ 167 (587)
++...+.+.++.+.++++.....+.+|.+.++ +|+++.+.+++.+++.+++.+++++.|+++||+|||+++.++.++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~---~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~ 92 (426)
T PRK12307 16 QKNALFSAWLGYVFDGFDFMLIFYIMYLIKAD---LGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVA 92 (426)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHH
Confidence 44456677788888999999999999999885 999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCcchhhHHhhhhhhccccccccccceeeeeccCCCcchhHhHHHHHHHHHHHHHHHHhhhhh--
Q psy11547 168 TILGWALIALAPSLPSSILPWIFTGRILTGLGSGMVGAPSRIYTAECSQPHLRGMLSSLASFGVSLGVLFEYSLGAFL-- 245 (587)
Q Consensus 168 ~~i~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l-- 245 (587)
.++++++++++++++ .++++|+++|++.|..++....++.|++|+++|++++++...+..+|.++++.+...+
T Consensus 93 ~~~~~~~~~~~~~~~-----~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~ 167 (426)
T PRK12307 93 YSVGTGLSGLASGVI-----MLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAE 167 (426)
T ss_pred HHHHHHHHHHHhHHH-----HHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcc
Confidence 999999999999998 9999999999999999999999999999999999999999999999999999888766
Q ss_pred --hHHHHHHHHHHHHHHHHHHhcccCCCchHHHhcCCHHHHHHHHHHHhCCCcchHHHHhhHHHHHHHHHHHhhhhhhHh
Q psy11547 246 --SWDTVAAISTIIPVLSIIAGCLMPESPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQGLYEFSKRQETQKSRNFKET 323 (587)
Q Consensus 246 --~wr~~f~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (587)
+||+.|++..+..++.+.+....||++++..++.+. .+... +...+......
T Consensus 168 ~~~w~~~f~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~------------~~~~~--------------~~~~~~~~~~~ 221 (426)
T PRK12307 168 AYGWRAAFFVGLLPVLLVIYIRARAPESKEWEEAKLSG------------KGKHS--------------QSAWSVFSLSM 221 (426)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHCCCChHHHHhhhhc------------ccccc--------------ccchhhhhHHH
Confidence 899999986554444333333356665432111000 00000 00000011233
Q ss_pred HHhhhcCCchHHHHHHHHHHHHHHhccchhhHhcHHHHHHhcCCC-cchHHHHHHHHHHHHHHHHhHHHhhcccCCchhh
Q psy11547 324 LAAIVEPACLKPFVILMLYFLIYQFSGVNPVTFYAVNIFKDAGAH-VNNNLAAVIMGIVRLIFTIASCIMMKKMGRRSLT 402 (587)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~~~~~ 402 (587)
.+.++++.++..... ....+ ..+.....+..+.|.++++.|.+ ...+.......++.+++.++.+++.||++||+.+
T Consensus 222 ~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~ 299 (426)
T PRK12307 222 KGLFNRAQFPLTLCV-FIVLF-SIFGANWPIFGLLPTYLAGEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTF 299 (426)
T ss_pred HHHHhhchHHHHHHH-HHHHH-HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence 445555443322221 11111 12222333455678888887776 3445666777888999999999999999999988
Q ss_pred HhhhHHHHHHHHHHHHHHHhccCCCCCCCcCccchhHHHHHHHHHHHH-HhccccccceeeeeccCCCCchhhHHHHHHH
Q psy11547 403 FISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAA-STIGYLVVPWVMIGEVYPTKVRGIVGGLTTC 481 (587)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~ 481 (587)
..+.++..+..+.+... . ..... .....+++.+ ...+..+....++.|.+|++.|+++.|+.+.
T Consensus 300 ~~~~~~~~~~~~~~~~~--~------------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~ 364 (426)
T PRK12307 300 SIGLLMSFLFIFPLFRI--P------------QDNYL-LLGACLFGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYN 364 (426)
T ss_pred HHHHHHHHHHHHHHHHH--c------------cccHH-HHHHHHHHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHH
Confidence 87776655544433221 1 11111 1122222222 1222233334677899999999999999999
Q ss_pred HHHHHHHHHHHhhHHHHHhhhhhhH
Q psy11547 482 ACHFFIFLTVKSYNMFQTHLTKEGT 506 (587)
Q Consensus 482 ~~~~g~~i~~~~~g~l~~~~g~~~~ 506 (587)
+..+++.++|.+.|.+.+..|+...
T Consensus 365 ~~~~~~~~gp~~~g~l~~~~g~~~~ 389 (426)
T PRK12307 365 LAATSGTFNSMAATWLGITMGLGAA 389 (426)
T ss_pred HHhHHHHHHHHHHHHHHHcccHHHH
Confidence 9999999999999999999886644
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-33 Score=278.20 Aligned_cols=372 Identities=12% Similarity=0.093 Sum_probs=266.0
Q ss_pred HHHHHHHHHHhhhhhhccccccHHHHHhhhcCCCCCccCcchhHHHHHHHHHHHHHHHHhHHHhhhccchhHHHHHhhHH
Q psy11547 88 SLTLAVFANLGNVNTGMVFGFSAAATSQLISRDSPYRITSDESTWIASLSAIGTMVGCVLGGYMMDLVGRKMTLIITEVP 167 (587)
Q Consensus 88 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~i~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~ 167 (587)
.|......+++.+..... ...++.+|.+.++ +|+|..+.|++.+.+.+++.+++++.|+++||+|||+++..+.++
T Consensus 8 ~~~~~~~~~~~~~~~~~~-~~~~~~lp~i~~~---~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l 83 (393)
T PRK09705 8 NFMLLVLVLIGLNMRPLL-TSVGPLLPQLRQA---SGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLL 83 (393)
T ss_pred HHHHHHHHHHHHHcchhh-hccchhHHHHHHH---hCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHH
Confidence 455555555555443333 5667899999985 999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCcchhhHHhhhhhhccccccccccceeeeeccCCCcchhHhHHHHHHHHHHHHHHHHhhhhh--
Q psy11547 168 TILGWALIALAPSLPSSILPWIFTGRILTGLGSGMVGAPSRIYTAECSQPHLRGMLSSLASFGVSLGVLFEYSLGAFL-- 245 (587)
Q Consensus 168 ~~i~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l-- 245 (587)
++++.++++++++++ .++++|+++|++.+...+....++.+++| ++|+++++++..+..+|..+++.++.++
T Consensus 84 ~~~~~~~~~~a~~~~-----~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~ 157 (393)
T PRK09705 84 IAVGALMRELYPQSA-----LLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQ 157 (393)
T ss_pred HHHHHHHHHHCcchH-----HHHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999 99999999999999999999999999997 7799999999988888888888877765
Q ss_pred ---hHHHHHHHHHHHHHHHHHHhccc-CCCchHHHhcCCHHHHHHHHHHHhCCCcchHHHHhhHHHHHHHHHHHhhhhhh
Q psy11547 246 ---SWDTVAAISTIIPVLSIIAGCLM-PESPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQGLYEFSKRQETQKSRNFK 321 (587)
Q Consensus 246 ---~wr~~f~~~~~~~~~~~~~~~~~-~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (587)
+||+.+.+.++..++.++..+.. ++.|+ ++. ++ ..
T Consensus 158 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~----------------------------------~~--~~ 196 (393)
T PRK09705 158 HSETWYQTLAWWALPAVVALFAWWWQSAREVA-----SSH----------------------------------KT--TT 196 (393)
T ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHhcCCCc-----ccc----------------------------------CC--Cc
Confidence 79998877666655443333222 22110 000 00 00
Q ss_pred HhHHhhhcCCchHHHHHHHHHHHHHHhccchhhHhcHHHHHHhcCCC-cchHHHHHHHHHHHHHHHHhHHHhhcccCCch
Q psy11547 322 ETLAAIVEPACLKPFVILMLYFLIYQFSGVNPVTFYAVNIFKDAGAH-VNNNLAAVIMGIVRLIFTIASCIMMKKMGRRS 400 (587)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~~~ 400 (587)
...+.++++..+. ... ..+.....+.....+.|.++.+.|.+ .+.+....+.+++.++++++.+++.||++||+
T Consensus 197 ~~~~~l~~~~~~~----l~~-~~~~~~~~~~~~~~~lp~~l~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~ 271 (393)
T PRK09705 197 TPVRVVFTPRAWT----LGV-YFGLINGGYASLIAWLPAFYIEIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRK 271 (393)
T ss_pred CCcccccCHhHHH----HHH-HHHHHHHHHHHHHHHHHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchH
Confidence 0112222222221 111 11122223455667788888888887 45677788889999999999999999999999
Q ss_pred hhHhhhHHHHHHHHHHHHHHHhccCCCCCCCcCccchhHHHHHHHHHHHHHhccccccceeeeeccC-CCCchhhHHHHH
Q psy11547 401 LTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVY-PTKVRGIVGGLT 479 (587)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~r~~~~g~~ 479 (587)
.+..+..+..++.+++.... ...... ...+.+.+.+. ..+.......+.. |++.+++..|+.
T Consensus 272 ~~~~~~~l~~~~~~~~~~~~--------------~~~~~~--~~~l~g~g~g~-~~~~~~~~~~~~~~~~~~~g~~~g~~ 334 (393)
T PRK09705 272 LLMLALVLQLVGFCGFIWLP--------------LQLPVL--WAMVCGLGLGG-AFPLCLLLALDHSVQPAIAGKLVAFM 334 (393)
T ss_pred HHHHHHHHHHHHHHHHHHcc--------------chHHHH--HHHHHHHhccc-hHHHHHHHHHhhcCCHHHHHHHHHHH
Confidence 88887766666655443210 111111 12222222222 2233334445555 467889999999
Q ss_pred HHHHHHHHHHHHHhhHHHHHhhh-hhhHHHHHHHHHHHHHHHhheecccCCCCC
Q psy11547 480 TCACHFFIFLTVKSYNMFQTHLT-KEGTFLMYGCISLLGTIFFYVYLPETKNKT 532 (587)
Q Consensus 480 ~~~~~~g~~i~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 532 (587)
+...+++..++|.+.|++.|..| +...|.+.++++++..+..+.+.+|++.+.
T Consensus 335 ~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (393)
T PRK09705 335 QGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAPARFPQL 388 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccccccch
Confidence 99999999999999999999987 555677666666666666666777766543
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=280.11 Aligned_cols=360 Identities=18% Similarity=0.195 Sum_probs=238.4
Q ss_pred HHHHHHHHHhhhhhhccccccHHHHHhhhcCCCCCccCcchhHHHH-HHH-----HHHHHHHHHhHHHhhhccchhHHHH
Q psy11547 89 LTLAVFANLGNVNTGMVFGFSAAATSQLISRDSPYRITSDESTWIA-SLS-----AIGTMVGCVLGGYMMDLVGRKMTLI 162 (587)
Q Consensus 89 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~i~-s~~-----~l~~~i~~~~~g~l~dr~Grr~~l~ 162 (587)
+......+++.+.+.+|...++...|.+.++ ++.++.+.+.+. +.. .++..+++++.|+++||+|||++++
T Consensus 14 ~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~ 90 (434)
T PRK15075 14 ARAILRVTSGNFLEMFDFFLFGFYATAIAKT---FFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLI 90 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHH
Confidence 3357778889999999999999999999986 888887765443 332 2333578999999999999999999
Q ss_pred HhhHHHHHHHHHHHhcCCCCCCc---chhhHHhhhhhhccccccccccceeeeeccCCCcchhHhHHHHHHHHHHHHHHH
Q psy11547 163 ITEVPTILGWALIALAPSLPSSI---LPWIFTGRILTGLGSGMVGAPSRIYTAECSQPHLRGMLSSLASFGVSLGVLFEY 239 (587)
Q Consensus 163 ~~~~~~~i~~~~~~~~~~~~~~~---~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~ 239 (587)
.+.+++++++++++++++++... ...++++|+++|++.|...+....++.|++|+++|++++++...+..+|..+++
T Consensus 91 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~ 170 (434)
T PRK15075 91 VTLSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAA 170 (434)
T ss_pred HHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999976100 012588999999999999999999999999999999999999888777777766
Q ss_pred Hhhhhh------------hHHHHHHHHHHHHHHHHHHhcccCCCchHHHhcCCHHHHHHHHHHHhCCCcchHHHHhhHHH
Q psy11547 240 SLGAFL------------SWDTVAAISTIIPVLSIIAGCLMPESPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQGLYE 307 (587)
Q Consensus 240 ~l~~~l------------~wr~~f~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (587)
.++..+ +||++|++..+..++........||++++...++
T Consensus 171 ~~g~~l~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~---------------------------- 222 (434)
T PRK15075 171 LLGYLLNQWLSPAQMAEWGWRIPFLIGCLIVPFIFLIRRSLEETEEFLARKH---------------------------- 222 (434)
T ss_pred HHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhhh----------------------------
Confidence 665542 8999999865543332222222445432110000
Q ss_pred HHHHHHHHhhhhhhHhH-HhhhcCCchHHHHHHHHHHHHHHhccchhhHhcHHHHHHh-cCCC-cchHHHHHHHHHHHHH
Q psy11547 308 FSKRQETQKSRNFKETL-AAIVEPACLKPFVILMLYFLIYQFSGVNPVTFYAVNIFKD-AGAH-VNNNLAAVIMGIVRLI 384 (587)
Q Consensus 308 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~-~~~~~~~~~~~~~~~i 384 (587)
+ .+.+... ...+++ +....... ..+.....++....|.|.++++ .|++ .+......+..+++++
T Consensus 223 --------~-~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~ 289 (434)
T PRK15075 223 --------R-PSMREIFRSLAANW---RIVLAGML-MVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFI 289 (434)
T ss_pred --------c-cccccHHHHHHHhH---HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 0 0000001 111111 11111112 2222233355677788888876 6887 4445666677888899
Q ss_pred HHHhHHHhhcccCCchhhHhhhHHHHHHHHHHHHHHHhccCCCCCCCcCccchhHHHHHHHHHHHHHhccccccceeeee
Q psy11547 385 FTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIG 464 (587)
Q Consensus 385 ~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (587)
+.++.|+++||++||+.+..+..+..+........... ............+.+.+.+ ...+..+.+..
T Consensus 290 ~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~ 357 (434)
T PRK15075 290 WLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVA-----------APSFARMLAVELWLSFLYG-SYNGAMVVALT 357 (434)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHc-----------CCchHHHHHHHHHHHHHHH-HHHhhHHHHHH
Confidence 99999999999999998776554433221111111101 0111111111222222222 22233346788
Q ss_pred ccCCCCchhhHHHHHHHHHHH-HHHHHHHhhHHHHHhhhhh
Q psy11547 465 EVYPTKVRGIVGGLTTCACHF-FIFLTVKSYNMFQTHLTKE 504 (587)
Q Consensus 465 ~~~p~~~r~~~~g~~~~~~~~-g~~i~~~~~g~l~~~~g~~ 504 (587)
|.+|++.|+++.|+.+..... ++.++|.+.|.+.|..|+.
T Consensus 358 e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g~~ 398 (434)
T PRK15075 358 EVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTGDK 398 (434)
T ss_pred HHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcCCc
Confidence 999999999999997666654 5888999999999988853
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-33 Score=283.52 Aligned_cols=391 Identities=13% Similarity=0.060 Sum_probs=254.2
Q ss_pred HHHHHHHHHHhhhhhhccccccHHHHHhhhcCCCCCccCcchhHHHHHHHHHHHHHHHHhHHHhhhccchhHHHHHhhHH
Q psy11547 88 SLTLAVFANLGNVNTGMVFGFSAAATSQLISRDSPYRITSDESTWIASLSAIGTMVGCVLGGYMMDLVGRKMTLIITEVP 167 (587)
Q Consensus 88 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~i~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~ 167 (587)
.|.++...++.......+....+..+|.+.+ + |++..+.|++.+++.++++++++++|+++||+|||++++++.++
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~---~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~ 102 (452)
T PRK11273 27 RWQIFLGIFFGYAAYYLVRKNFALAMPYLVE---Q-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLIL 102 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH---c-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHH
Confidence 3444455555555566666556677887765 4 89999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcC----CCCCCcchhhHHhhhhhhccccccccccceeeeeccCCCcchhHhHHHHHHHHHHHH-HHHHhh
Q psy11547 168 TILGWALIALAP----SLPSSILPWIFTGRILTGLGSGMVGAPSRIYTAECSQPHLRGMLSSLASFGVSLGVL-FEYSLG 242 (587)
Q Consensus 168 ~~i~~~~~~~~~----~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~-i~~~l~ 242 (587)
.+++.+++++++ +++ .+++.|++.|++.+...+.....+.|++|+++|+++++++..+.++|.. ++++++
T Consensus 103 ~~i~~~~~~~~~~~~~~~~-----~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~ 177 (452)
T PRK11273 103 AAAVMLFMGFVPWATSSIA-----VMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFL 177 (452)
T ss_pred HHHHHHHHHhhhcccccHH-----HHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 999999988864 455 7888999999999988888888899999999999999999999998864 455543
Q ss_pred hhh----hHHHHHHHHHHHHHHHHHHh-cccCCCchHHHhcCCHHHHHHHHHHHhCCCcchHHHHhhHHHHHHHHHHHhh
Q psy11547 243 AFL----SWDTVAAISTIIPVLSIIAG-CLMPESPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQGLYEFSKRQETQKS 317 (587)
Q Consensus 243 ~~l----~wr~~f~~~~~~~~~~~~~~-~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (587)
..+ +||+.|++.+++.++..++. +++||+|+....+.+ ++... +... .. +. .++++
T Consensus 178 ~~~~~~~gw~~~f~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~---~~~~-------~~-------~~-~~~~~ 238 (452)
T PRK11273 178 LGMAWFNDWHAALYMPAFAAILVALFAFAMMRDTPQSCGLPPI-EEYKN---DYPD-------DY-------NE-KHEQE 238 (452)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCHhhcCCCCh-hhhhh---cccc-------cc-------cc-ccCCC
Confidence 322 99999999888777654444 457887753211111 11000 0000 00 00 00000
Q ss_pred hhhhH-hH-HhhhcCCchHHHHHHHHHHHHHHhccchhhHhcHHHHHHh-cCCC-cchHHHHHHHHHHHHHHHHhHHHhh
Q psy11547 318 RNFKE-TL-AAIVEPACLKPFVILMLYFLIYQFSGVNPVTFYAVNIFKD-AGAH-VNNNLAAVIMGIVRLIFTIASCIMM 393 (587)
Q Consensus 318 ~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~-~~~~~~~~~~~~~~~i~~~~~g~l~ 393 (587)
.+.++ .. ..++++..+... +..+......+....+.|.++++ .|++ ...+....+..++.+++.++.|+++
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~-----l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~ 313 (452)
T PRK11273 239 LTAKQIFMQYVLPNKLLWYIA-----IANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMS 313 (452)
T ss_pred ccHHHHHHHHHHcChHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00111 11 123333322211 11111112234466788888876 5777 4556666777888899999999999
Q ss_pred ccc--CCchhhH-hhhHHHHHHHHHHHHHHHhccCCCCCCCcCccchhHHHHHHHHHHHHHhccccccceeeeeccCCCC
Q psy11547 394 KKM--GRRSLTF-ISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTK 470 (587)
Q Consensus 394 d~~--g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 470 (587)
||+ +||.... ....+..++.+++.. .. ....+........++... .+.......++.|.+|++
T Consensus 314 dr~~~~r~~~~~~~~~~l~~~~~~~~~~--~~-----------~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~p~~ 379 (452)
T PRK11273 314 DKVFRGNRGATGVFFMTLVTIATIVYWL--NP-----------AGNPTVDMACMIVIGFLI-YGPVMLIGLHALELAPKK 379 (452)
T ss_pred HHHccCCcchHHHHHHHHHHHHHHHHHH--hc-----------ccChHHHHHHHHHHHHHH-HhHHHHHHHHHHHHcChh
Confidence 999 4444322 222222222222211 01 011222222222222211 111112224567999999
Q ss_pred chhhHHHHHHHHHHHHHHH-HHHhhHHHHHhhhhhhHHHHHHHHHHHHHHHhheec
Q psy11547 471 VRGIVGGLTTCACHFFIFL-TVKSYNMFQTHLTKEGTFLMYGCISLLGTIFFYVYL 525 (587)
Q Consensus 471 ~r~~~~g~~~~~~~~g~~i-~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 525 (587)
.||++.|+.+...++|+.+ +|.+.|.+.|..|+...|++.+++++++.+....+.
T Consensus 380 ~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~ 435 (452)
T PRK11273 380 AAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVM 435 (452)
T ss_pred hhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999888765 799999999999999999888887777766655443
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-33 Score=273.31 Aligned_cols=346 Identities=12% Similarity=0.104 Sum_probs=237.2
Q ss_pred cccHHHHHhhhcCCCCCccCcchhHHHHHHHHHHHHHHHHhHHHhhhccchhHHHHHhhHHHHHHHHHHHhcCCCCCCcc
Q psy11547 107 GFSAAATSQLISRDSPYRITSDESTWIASLSAIGTMVGCVLGGYMMDLVGRKMTLIITEVPTILGWALIALAPSLPSSIL 186 (587)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~s~~~~g~i~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~ 186 (587)
...++.+|.+.++ +|+|..+.|++.+.+.+++.+++++.|+++||+|||+++..+.+....+.+.....++++
T Consensus 8 ~~~~~~lp~i~~~---~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~---- 80 (368)
T TIGR00903 8 VTFSPVLSLVAED---IDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYE---- 80 (368)
T ss_pred HHHHhhHHHHHHH---hCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHH----
Confidence 3456888999885 999999999999999999999999999999999999987766555555443333337888
Q ss_pred hhhHHhhhhhhccccccccccceeeeeccCCCcchhHhHHHHHHHHHHHHHHHHhhhhh----hHHHHHHHHHHHHHHHH
Q psy11547 187 PWIFTGRILTGLGSGMVGAPSRIYTAECSQPHLRGMLSSLASFGVSLGVLFEYSLGAFL----SWDTVAAISTIIPVLSI 262 (587)
Q Consensus 187 ~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l----~wr~~f~~~~~~~~~~~ 262 (587)
.++++|+++|++.+. .+.....+.|++|+++|++++++.+.+..+|.+++++++.++ +||+.|++.++++++..
T Consensus 81 -~l~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~ 158 (368)
T TIGR00903 81 -WLLACQLLAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGI 158 (368)
T ss_pred -HHHHHHHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHH
Confidence 999999999999986 456666679999999999999999999999999999999888 99999999888877766
Q ss_pred HHhc-ccCCCchHHHhcCCHHHHHHHHHHHhCCCcchHHHHhhHHHHHHHHHHHhhhhhhHhHHhhhcCCchHHHHHHHH
Q psy11547 263 IAGC-LMPESPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQGLYEFSKRQETQKSRNFKETLAAIVEPACLKPFVILML 341 (587)
Q Consensus 263 ~~~~-~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (587)
++.+ ++||+|++.. +..+ . + +..+.+.+.++++..+.. .
T Consensus 159 ~~~~~~lp~~p~~~~---~~~~--------------~-----------------~-~~~~~~~~ll~~~~~~~~-----~ 198 (368)
T TIGR00903 159 ILVLAALPALPFQAA---EGFG--------------F-----------------K-DAVKEFGALAGRKDLWII-----G 198 (368)
T ss_pred HHHHHHcCCCCCCCC---CCcc--------------h-----------------H-HHHHHHHHHHcChhHHHH-----H
Confidence 5554 4899885421 0000 0 0 000123455665544322 2
Q ss_pred HHHHHHhccchhhHhcHHHHHHhcCCCcchHHHHHHHHHHHHHHHHhHHHhhcccCCc---hhhHh-hhHHHHHHHHHHH
Q psy11547 342 YFLIYQFSGVNPVTFYAVNIFKDAGAHVNNNLAAVIMGIVRLIFTIASCIMMKKMGRR---SLTFI-SSIGCGVSMTGLG 417 (587)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~~---~~~~~-~~~~~~~~~~~~~ 417 (587)
...+......+.+..|.|.++++.|++...+....+..+. +.+..+++.||..|| +.... ..++.++....+.
T Consensus 199 ~~~~~~~~~~~~~~~wlp~~L~~~g~s~~~~~~~~l~~~~---g~~g~~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~~ 275 (368)
T TIGR00903 199 AILGFGVALFDNLAIWLEAALRPAGLEDIAGDAVALAILA---GLIGVAVIPDRVARAGLRSIYIRAAALLIAAFFLALA 275 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCChHHHHHHHHHHHH---HHHHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 2222233345567789999998877774333333333333 344457788877543 32222 2222232222222
Q ss_pred HHHHhccCCCCCCCcCccchhHHHHHHHHHHHHHhccccccceeeeeccCCCCchhhHHHHHHHHHHHHHHHHHHhhHHH
Q psy11547 418 LYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMF 497 (587)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l 497 (587)
. . .......... ....++.....+..+++.+|.+|++.|+++.|+.+..+++++.++|.+.+.+
T Consensus 276 ~---~------------~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~ 339 (368)
T TIGR00903 276 F---E------------LNRLALFAFI-GIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLF 339 (368)
T ss_pred H---c------------cccHHHHHHH-HHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHH
Confidence 1 1 1122222222 2222223333344457889999999999999999999999999999999887
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHHhh
Q psy11547 498 QTHLTKEGTFLMYGCISLLGTIFFY 522 (587)
Q Consensus 498 ~~~~g~~~~~~~~~~~~~~~~~~~~ 522 (587)
.. +....|.++++..+++.+...
T Consensus 340 ~~--~~~~~f~~~~~~~~i~~~~~~ 362 (368)
T TIGR00903 340 IS--SAEAYFTFLAILITIAFAIAL 362 (368)
T ss_pred hc--CHHHHHHHHHHHHHHHHHHHH
Confidence 74 666778888877777776653
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-32 Score=279.86 Aligned_cols=387 Identities=13% Similarity=0.092 Sum_probs=273.6
Q ss_pred HHHHHHHHHHhhhhhhccccccHHHHHhhhcCCCCCccCcchhHHHHHHHHHHHHHHHHhHHHhhhccchhHHHHHhhHH
Q psy11547 88 SLTLAVFANLGNVNTGMVFGFSAAATSQLISRDSPYRITSDESTWIASLSAIGTMVGCVLGGYMMDLVGRKMTLIITEVP 167 (587)
Q Consensus 88 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~i~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~ 167 (587)
+|..+..++++.++..+|..+++..+|.+.++ +|.+..+.+|+.+.|.++..++.+++|+++||+|||++++.+.++
T Consensus 4 ~~~~~~~~~~~~~~~~ld~tiv~~a~p~i~~~---l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~ 80 (495)
T PRK14995 4 QWLTLVIIVLVYIPVAIDATVLHVAAPTLSMT---LGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTL 80 (495)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 56678888999999999999999999999985 999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCcchhhHHhhhhhhccccccccccceeeeecc-CCCcchhHhHHHHHHHHHHHHHHHHhhhhh-
Q psy11547 168 TILGWALIALAPSLPSSILPWIFTGRILTGLGSGMVGAPSRIYTAECS-QPHLRGMLSSLASFGVSLGVLFEYSLGAFL- 245 (587)
Q Consensus 168 ~~i~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~-~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l- 245 (587)
+.++++++++++|++ .++++|+++|+|.+...+.....+.+++ |+++|+++++++.....+|.++||.+++++
T Consensus 81 ~~~~~~~~~~a~~~~-----~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~ 155 (495)
T PRK14995 81 FGLASLAAAFSPTAS-----WLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILL 155 (495)
T ss_pred HHHHHHHHHHcCCHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999 9999999999999998888888887766 678899999999999999999999999988
Q ss_pred ---hHHHHHHHHHHHHHHHHHHhcc-cCCCchHHHhcCCHHHHHH----------HHHHHhCCCcchHHHHhh----HHH
Q psy11547 246 ---SWDTVAAISTIIPVLSIIAGCL-MPESPSWLLSQGRKDACRN----------SLRRLRANNYDVEKEVQG----LYE 307 (587)
Q Consensus 246 ---~wr~~f~~~~~~~~~~~~~~~~-~~esp~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~----~~~ 307 (587)
+|||.|++...++++.+++.++ +||.+....++.+...... .++............... ...
T Consensus 156 ~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~~~~~~~~d~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (495)
T PRK14995 156 EHFYWGSVFLINVPIVLVVMGLTARYVPRQAGRRDQPLNLGHALMLIVAILLLVYSAKTALKGFLSLWVTSLTLLTGALL 235 (495)
T ss_pred ccCChHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCChHhHHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHH
Confidence 9999999988887776655444 7776532111111111000 000000000000000000 000
Q ss_pred H-HHHHHHHhhhhhhHhHHhhhcCCchHHHHHHHHHHHHHHhccchhhHhcHHHHHHh-cCCC-cchHHHHHHHHHHHHH
Q psy11547 308 F-SKRQETQKSRNFKETLAAIVEPACLKPFVILMLYFLIYQFSGVNPVTFYAVNIFKD-AGAH-VNNNLAAVIMGIVRLI 384 (587)
Q Consensus 308 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~-~~~~~~~~~~~~~~~i 384 (587)
. .....+.+...+.-..+.++++.+....+..+. .........++.|.+++. .|++ .+.+.......++..+
T Consensus 236 l~~f~~~e~~~~~p~~~~~lf~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~ 310 (495)
T PRK14995 236 LGLFIRTQLAASRPMIDMRLFTHRIILSGVVMAMT-----AMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGF 310 (495)
T ss_pred HHHHHHHHhcCCCCCcCHHHhCCcccHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 0 000000011111112455665554332222222 111233455677777765 6887 6677888888899999
Q ss_pred HHHhHHHhhcccCCchhhHhhhHHHHHHHHHHHHHHHhccCCCCCCCcCccchhHHHHHHHHHHHHHhccccccceeeee
Q psy11547 385 FTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIG 464 (587)
Q Consensus 385 ~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (587)
+.++.|++.||+|+|+.+..+.++.+++.+++..... ....+.......+.+.+.+....+. ...+.
T Consensus 311 ~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~------------~~~~~~~~~~~~l~G~g~g~~~~~~-~~~~~ 377 (495)
T PRK14995 311 SGPIAGILVSRLGLRLVATGGMALSALSFYGLAMTDF------------STQQWQAWGLMALLGFSAASALLAS-TSAIM 377 (495)
T ss_pred HHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhcC------------CCchHHHHHHHHHHHHhHHHHHHHH-HHHHH
Confidence 9999999999999999888787777666655443211 1122333334444444444433333 36677
Q ss_pred ccCCCCchhhHHHHHHHHHHHHHHHHHHhhHHHHHh
Q psy11547 465 EVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTH 500 (587)
Q Consensus 465 ~~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~ 500 (587)
+..|++.++.+.++.++...+|..+|+.+.|.+.+.
T Consensus 378 ~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~~ 413 (495)
T PRK14995 378 AAAPPEKAAAAGAIETMAYELGAGLGIAIFGLLLSR 413 (495)
T ss_pred hcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999999999999999988753
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-31 Score=265.13 Aligned_cols=360 Identities=16% Similarity=0.156 Sum_probs=251.9
Q ss_pred HHHHHHHhhhhhhccccccHHHHHhhhcCCCCCccCcchhHHHHHHHHHHHHHHHHhHHHhhhccchhHHHHHhhHHHHH
Q psy11547 91 LAVFANLGNVNTGMVFGFSAAATSQLISRDSPYRITSDESTWIASLSAIGTMVGCVLGGYMMDLVGRKMTLIITEVPTIL 170 (587)
Q Consensus 91 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~i~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i 170 (587)
..+++.++.+..........+.+|.+.++ +|+++.+.|+..+++.++..+++++.|+++||+|||++++.+.++.++
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~ 97 (394)
T PRK10213 21 AVFSVAFCVACLIIVEFLPVSLLTPMAQD---LGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTL 97 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHH---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHH
Confidence 33333333333333333444567788774 999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCCcchhhHHhhhhhhccccccccccceeeeeccCCCcchhHhHHHHHHHHHHHHHHHHhhhhh----h
Q psy11547 171 GWALIALAPSLPSSILPWIFTGRILTGLGSGMVGAPSRIYTAECSQPHLRGMLSSLASFGVSLGVLFEYSLGAFL----S 246 (587)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l----~ 246 (587)
+.++++++++++ .++++|+++|++.+...+...+++.|++|+++|++++++...+.++|.+++|++++.+ +
T Consensus 98 ~~~~~~~~~~~~-----~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~g 172 (394)
T PRK10213 98 SCLLVSFANSFS-----LLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIG 172 (394)
T ss_pred HHHHHHHHChHH-----HHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 999999999999 9999999999999999999999999999999999999999999999999999999987 9
Q ss_pred HHHHHHHHHHHHHHHHHHhcc-cCCCchHHHhcCCHHHHHHHHHHHhCCCcchHHHHhhHHHHHHHHHHHhhhhhhHhHH
Q psy11547 247 WDTVAAISTIIPVLSIIAGCL-MPESPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQGLYEFSKRQETQKSRNFKETLA 325 (587)
Q Consensus 247 wr~~f~~~~~~~~~~~~~~~~-~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (587)
||+.|++.++++++..+..+. +||+|+. +. ...+..++
T Consensus 173 w~~~f~~~~~l~~~~~l~~~~~~p~~~~~-----~~------------------------------------~~~~~~~~ 211 (394)
T PRK10213 173 WRNVFNAAAVMGVLCIFWIIKSLPSLPGE-----PS------------------------------------HQKQNTFR 211 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCcc-----cc------------------------------------cchhHHHH
Confidence 999999988777765544433 6765421 00 00011223
Q ss_pred hhhcCCchHHHHHHHHHHHHHHhccchh-hHhcHHHHHHhcCCC-cchHHHHHHHHHHHHHHHHhHHHhhcccCCchhhH
Q psy11547 326 AIVEPACLKPFVILMLYFLIYQFSGVNP-VTFYAVNIFKDAGAH-VNNNLAAVIMGIVRLIFTIASCIMMKKMGRRSLTF 403 (587)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~~~~~~ 403 (587)
.++++..+...+..+... ..... ..+..|.+.++.|++ ...+......+++.+++.++.+++.||.++ +.+.
T Consensus 212 ~l~~~~~~~~~~~~~~~~-----~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~~-~~l~ 285 (394)
T PRK10213 212 LLQRPGVMAGMIAIFMSF-----AGQFAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSVK-LALA 285 (394)
T ss_pred HhcCHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccch-hHHH
Confidence 444444333222111111 11222 233357777777887 345666777888899999999999999644 4433
Q ss_pred hhhHHHHHHHHHHHHHHHhccCCCCCCCcCccchhHHHHHHHHHHHHHhccccccceeeeeccCCCCchhhHHHHHHHHH
Q psy11547 404 ISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCAC 483 (587)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~ 483 (587)
.+..+..++.+.+... ....+.......+.+.++... .+...+++.+..| +.++...++.....
T Consensus 286 ~~~~~~~~~~~~l~~~--------------~~~~~~~~~~~~l~G~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 349 (394)
T PRK10213 286 GAPLVLAVSALVLTLW--------------GSDKIVATGVAIIWGLTFALV-PVGWSTWITRSLA-DQAEKAGSIQVAVI 349 (394)
T ss_pred HHHHHHHHHHHHHHHH--------------hhhHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHCc-ccHHHHHHHHHHHH
Confidence 3333323322222211 112333333444444444333 3333356777777 44567778888888
Q ss_pred HHHHHHHHHhhHHHHHhhhhhhHHHHHHHHHHHHHHHh
Q psy11547 484 HFFIFLTVKSYNMFQTHLTKEGTFLMYGCISLLGTIFF 521 (587)
Q Consensus 484 ~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~ 521 (587)
++|..+|+.+.|.+.|..|+...+...+++.++..+++
T Consensus 350 ~lg~~~G~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~ 387 (394)
T PRK10213 350 QLANTCGAAIGGYALDNIGLTSPLMLSGTLMLLTALLV 387 (394)
T ss_pred HHHHHHHHHHHHHHHhccChhhHHHHHHHHHHHHHHHH
Confidence 99999999999999999998877777666655555443
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-32 Score=273.84 Aligned_cols=351 Identities=15% Similarity=0.070 Sum_probs=254.7
Q ss_pred ccccHHHHHhhhcCCCCCccCcchhHHHHHHHHHHHHHHHHhHHHhhhccchhHHHHHhhHHHHHHHHHHHhcCCCCCCc
Q psy11547 106 FGFSAAATSQLISRDSPYRITSDESTWIASLSAIGTMVGCVLGGYMMDLVGRKMTLIITEVPTILGWALIALAPSLPSSI 185 (587)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~s~~~~g~i~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~ 185 (587)
....++.+|.+.++ +|++..+.|++.+++.+++.++++++|+++||+|||+++.++.++.+++.++++++++++
T Consensus 19 ~~~~~~~~~~~~~~---~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~--- 92 (377)
T TIGR00890 19 VYTWTLLAPPLGRY---FGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSLA--- 92 (377)
T ss_pred HhhhhhHHHHHHHH---hCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHHHHH---
Confidence 33456788999885 999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHhhhhhhccccccccccceeeeeccCCCcchhHhHHHHHHHHHHHHHHHHhhhhh----hHHHHHHHHHHHHHHH
Q psy11547 186 LPWIFTGRILTGLGSGMVGAPSRIYTAECSQPHLRGMLSSLASFGVSLGVLFEYSLGAFL----SWDTVAAISTIIPVLS 261 (587)
Q Consensus 186 ~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l----~wr~~f~~~~~~~~~~ 261 (587)
.++++|++.|++.+..++.....+.+++| ++|+++.++...+.++|.++++++...+ +||+.|++.+++.++.
T Consensus 93 --~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~ 169 (377)
T TIGR00890 93 --ALYLTYGLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYMGIIFLLV 169 (377)
T ss_pred --HHHHHHHHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 99999999999999888888888889887 5699999999999999988766555554 8999999999888877
Q ss_pred HHHhcc-cCCCchHHHhcCCHHHHHHHHHHHhCCCcchHHHHhhHHHHHHHHHHHhhhhhhHhHHhhhcCCchHHHHHHH
Q psy11547 262 IIAGCL-MPESPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQGLYEFSKRQETQKSRNFKETLAAIVEPACLKPFVILM 340 (587)
Q Consensus 262 ~~~~~~-~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (587)
.+..++ ++++|+... +++.+ .+.+.+...+.++++..+......
T Consensus 170 ~~~~~~~~~~~~~~~~-~~~~~---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~- 214 (377)
T TIGR00890 170 IVLGAFLIGYPPGQLI-KTNIE---------------------------------VSVKDYTVWEMLRTPQFWVLYLSF- 214 (377)
T ss_pred HHHHHHheecCchhcc-ccCcc---------------------------------cchhhhhHHHHHcCccHHHHHHHH-
Confidence 666554 555432100 00000 000011223344444433221111
Q ss_pred HHHHHHHhccchhhHhcHHHHHHhcCCC-cchHHHHHHHHHHHHHHHHhHHHhhcccCCchhhHhhhHHHHHHHHHHHHH
Q psy11547 341 LYFLIYQFSGVNPVTFYAVNIFKDAGAH-VNNNLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLY 419 (587)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~ 419 (587)
+.... .......+.+.+.++.+.+ ........+..+..++++++.+++.||++||+.+.++.++.+++.+.+...
T Consensus 215 ---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~ 290 (377)
T TIGR00890 215 ---FLNAV-SGLLLIGLYKPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFI 290 (377)
T ss_pred ---HHHhH-HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHc
Confidence 11111 1222333445556667766 345567777888999999999999999999999888877777766655431
Q ss_pred HHhccCCCCCCCcCccchhHHHHHHHHHHHHHhccccccceeeeeccCCCCchhhHHHHHHHHHHHHHHHHHHhhHHHHH
Q psy11547 420 IFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQT 499 (587)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~ 499 (587)
. ............+.+.+.+. ..+....++.|.+|++.|+++.|+.+....+|..++|.+.|.+.+
T Consensus 291 ~-------------~~~~~~~~~~~~~~g~~~g~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~ 356 (377)
T TIGR00890 291 P-------------MLNDVLFLATVALVFFTWGG-TISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALT 356 (377)
T ss_pred c-------------cchhHHHHHHHHHHHHHhcc-chhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1 01111121222223322222 223334678899999999999999999999999999999999999
Q ss_pred hhhhhhHHHHHHHHHHHHH
Q psy11547 500 HLTKEGTFLMYGCISLLGT 518 (587)
Q Consensus 500 ~~g~~~~~~~~~~~~~~~~ 518 (587)
..|+...|.+.+++++++.
T Consensus 357 ~~g~~~~f~~~~~~~~~~~ 375 (377)
T TIGR00890 357 EIGFEYTFIVTGAFALTSL 375 (377)
T ss_pred hhchhhHHHHHHHHHHHhc
Confidence 9999988888777666543
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-31 Score=269.82 Aligned_cols=360 Identities=15% Similarity=0.167 Sum_probs=252.4
Q ss_pred HHhhhhhhccccccHHHHHhhhcCCCCCccCcchhHHHHHHHHHHHHHHHHhHHHhhhccchhHHHHHhhHHHHHHHHHH
Q psy11547 96 NLGNVNTGMVFGFSAAATSQLISRDSPYRITSDESTWIASLSAIGTMVGCVLGGYMMDLVGRKMTLIITEVPTILGWALI 175 (587)
Q Consensus 96 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~i~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~ 175 (587)
.+..+...++.+...+.+|....+ ++|.|..+.|++.+++.+++.+++++.|+++||+|||++++.+.++++++.+++
T Consensus 21 ~~~~~~~~~~~~~~~~~l~~~i~~--~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~ 98 (399)
T PRK05122 21 VMFTFISYLTIGLPLAVLPGYVHD--QLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGLLY 98 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--hcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHHHHH
Confidence 334444556666677888874432 499999999999999999999999999999999999999999999988887766
Q ss_pred Hhc---CCCCCCcchhhHHhhhhhhccccccccccceeeeeccCCCcchhHhHHHHHHHHHHHHHHHHhhhhh----hHH
Q psy11547 176 ALA---PSLPSSILPWIFTGRILTGLGSGMVGAPSRIYTAECSQPHLRGMLSSLASFGVSLGVLFEYSLGAFL----SWD 248 (587)
Q Consensus 176 ~~~---~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l----~wr 248 (587)
+++ ++.....++.+++.|+++|++.+...+...+++.|++|+++|++++++...+..+|.++|+.+++.+ +||
T Consensus 99 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~ 178 (399)
T PRK05122 99 LLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYHWGGLA 178 (399)
T ss_pred HHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHHcccHH
Confidence 554 2211111227889999999999999999999999999999999999999999999999999998877 899
Q ss_pred HHHHHHHHHHHHHHHHhcccCCCchHHHhcCCHHHHHHHHHHHhCCCcchHHHHhhHHHHHHHHHHHhhhhhhHhHHhhh
Q psy11547 249 TVAAISTIIPVLSIIAGCLMPESPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQGLYEFSKRQETQKSRNFKETLAAIV 328 (587)
Q Consensus 249 ~~f~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (587)
+.+++.+++.++..+.....|+++.. +++. .+..+.++
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~---------------------------------------~~~~~~~~ 216 (399)
T PRK05122 179 GLGLLIMLLALLGLLLARPRPAVPPV---KGER---------------------------------------LPFRRVLG 216 (399)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCC---Cccc---------------------------------------hhHHHHHH
Confidence 99988777665544443323432210 0000 00001111
Q ss_pred cCCchHHHHHHHHHHHHHHhccchhhHhcHHHHHHhcCCCcchHHHHHHHHHHHHHHHHhHHHhhcccCCchhhHhhhHH
Q psy11547 329 EPACLKPFVILMLYFLIYQFSGVNPVTFYAVNIFKDAGAHVNNNLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIG 408 (587)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~~~~~~~~~~~ 408 (587)
+ .+........... .......+.+.+..+.+.+ ..........++.+++.++.+++.||+++|+.+..+.++
T Consensus 217 ~--~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~ 288 (399)
T PRK05122 217 R--VWPYGMGLALASI-----GFGTIATFITLYYAARGWD-GAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLV 288 (399)
T ss_pred H--HHHHHHHHHHHHH-----HHHHHHHHHHHHHHHcccc-cchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 0 0111111111111 1223444556666665553 344555667788889999999999999999988877777
Q ss_pred HHHHHHHHHHHHHhccCCCCCCCcCccchhHHHHHHHHHHHHHhccccccceeeeeccCCCCchhhHHHHHHHHHHHHHH
Q psy11547 409 CGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIF 488 (587)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~ 488 (587)
.+++.+++.. ..+.+...+...+.+.+.... .+.......|.+|++.|+++.|+.+....+|..
T Consensus 289 ~~~~~~~~~~---------------~~~~~~~~~~~~l~G~~~~~~-~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ 352 (399)
T PRK05122 289 EILGLLLLWL---------------APSPWMALIGAALTGFGFSLV-FPALGVEAVKRVPPQNRGAALGAYSVFLDLSLG 352 (399)
T ss_pred HHHHHHHHHH---------------hccHHHHHHHHHHHHHhHHHH-HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH
Confidence 7766655544 122233333333344433332 233335567889999999999999999999999
Q ss_pred HHHHhhHHHHHhhhhhhHHHHHHHHHHHHHHHhhe
Q psy11547 489 LTVKSYNMFQTHLTKEGTFLMYGCISLLGTIFFYV 523 (587)
Q Consensus 489 i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 523 (587)
+++.+.|.+.+..|++..+++.+++++++.++.++
T Consensus 353 ~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 387 (399)
T PRK05122 353 ITGPLAGLVASWFGYPSIFLAAALAALLGLALTWL 387 (399)
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998888877777665543
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-31 Score=268.15 Aligned_cols=367 Identities=11% Similarity=0.046 Sum_probs=265.0
Q ss_pred HHHHHHHHHHhhhhhhccccccHHHHHhhhcCCCCCccCcchhHHHHHHHHHHHHHHHHhHHHhhhccchhHHHHHhhHH
Q psy11547 88 SLTLAVFANLGNVNTGMVFGFSAAATSQLISRDSPYRITSDESTWIASLSAIGTMVGCVLGGYMMDLVGRKMTLIITEVP 167 (587)
Q Consensus 88 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~i~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~ 167 (587)
++.+...++++.+..+.+....++.+|.+.++ +|+|..+.+++.+.+.+++.++++++|++.||+|||+++..+.++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~---~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~ 81 (394)
T PRK03699 5 RIKLTWISFLSYALTGALVIVTGMVMGPIAEY---FNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFAL 81 (394)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH---hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 33455566777888888888889999999885 999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCcchhhHHhhhhhhccccccccccceeeeeccCCCcchhHhHHHHHHHHHHHHHHHHhhhhh--
Q psy11547 168 TILGWALIALAPSLPSSILPWIFTGRILTGLGSGMVGAPSRIYTAECSQPHLRGMLSSLASFGVSLGVLFEYSLGAFL-- 245 (587)
Q Consensus 168 ~~i~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l-- 245 (587)
.+++.++++++++++ .+++.|+++|++.|...+...+++.|++|+++|+++++.......+|..++|.+.+.+
T Consensus 82 ~~i~~~l~~~~~~~~-----~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~ 156 (394)
T PRK03699 82 MILAVAGLMFSHSLA-----LFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLA 156 (394)
T ss_pred HHHHHHHHHHcchHH-----HHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999988 8999999999999999999999999999999999999999888999998988887654
Q ss_pred ---hHHHHHHHHHHHHHHHHHHhcccCCCchHHHhcCCHHHHHHHHHHHhCCCcchHHHHhhHHHHHHHHHHHhhhhhhH
Q psy11547 246 ---SWDTVAAISTIIPVLSIIAGCLMPESPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQGLYEFSKRQETQKSRNFKE 322 (587)
Q Consensus 246 ---~wr~~f~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (587)
+||+.|.+.+++.++..++.++ .+.|+. ++++.+ + ++..
T Consensus 157 ~~~gw~~~f~~~~~~~~~~~~~~~~-~~~p~~--~~~~~~------------~--------------------~~~~--- 198 (394)
T PRK03699 157 RSIEWYWVYACIGLVYVAIFILTLF-SEFPAL--GKHAPK------------A--------------------DKPV--- 198 (394)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHh-cCCccc--cccCcc------------c--------------------cCcc---
Confidence 8999999988877766554433 222210 000000 0 0000
Q ss_pred hHHhhhcCCchHHHHHHHHHHHHHHhccchhhHhcHHHHHHh-cCCC-cchHHHHHHHHHHHHHHHHhHHHhhcccCCch
Q psy11547 323 TLAAIVEPACLKPFVILMLYFLIYQFSGVNPVTFYAVNIFKD-AGAH-VNNNLAAVIMGIVRLIFTIASCIMMKKMGRRS 400 (587)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~-~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~~~ 400 (587)
.+ ....+..... ....+........+..|.|.++++ .|++ .+.+.......++..+++++.+++.||+++|+
T Consensus 199 ----~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~ 272 (394)
T PRK03699 199 ----AK-EKWGIGVLFL-AIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQR 272 (394)
T ss_pred ----cc-ccCChHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhh
Confidence 00 0011112222 222222222344566788888854 6887 45567777788889999999999999999998
Q ss_pred hhHhhhHHHHHHHHHHHHHHHhccCCCCCCCcCccchhHHHHHHHHHHHHHhccccccceeeeeccCCCCchhhHHHHHH
Q psy11547 401 LTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTT 480 (587)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~ 480 (587)
.+.....+..+...++.. . .+.+......+..+.+.. +..+...++..+..|.+ ++...+...
T Consensus 273 ~l~~~~~~~~~~~~~~~~---~------------~~~~~~~~~~~~~G~~~~-~~~~~~~~~~~~~~~~~-~~~~~g~~~ 335 (394)
T PRK03699 273 ILTVLAGLALVLMYLFVN---T------------DDPSHLLYAILGLGFFSS-AIYTTIITLGSQQTKVA-SPKLVNFIL 335 (394)
T ss_pred HHHHHHHHHHHHHHHHHH---c------------CCchHHHHHHHHHHHHHH-HHHHHHHHHHHHHccCC-CHHHHHHHH
Confidence 887666555544433322 1 122222222333333222 23333335566666544 577788888
Q ss_pred HHHHHHHHHHHHhhHHHHHhhhhhhHHHHHHHHHHHHHHHhhe
Q psy11547 481 CACHFFIFLTVKSYNMFQTHLTKEGTFLMYGCISLLGTIFFYV 523 (587)
Q Consensus 481 ~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 523 (587)
....+|..++|.+.|.+.+..|++..+++.+++++++.+.+..
T Consensus 336 ~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 378 (394)
T PRK03699 336 TCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFVMCIL 378 (394)
T ss_pred HhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHHHHHH
Confidence 9999999999999999999999998888888777776654433
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-32 Score=273.66 Aligned_cols=384 Identities=16% Similarity=0.164 Sum_probs=266.7
Q ss_pred hhhhccccccHHHHHhhhcCCCCCccCcchhHHHHHHHHHHHHHHHHhHHHhhhccchhHHHHHhhHHHHHHHHHHHhcC
Q psy11547 100 VNTGMVFGFSAAATSQLISRDSPYRITSDESTWIASLSAIGTMVGCVLGGYMMDLVGRKMTLIITEVPTILGWALIALAP 179 (587)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~i~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~ 179 (587)
+...++....+...|.+.++ +|.+..+.+++.+++.++..++.++.|+++||+|||+++..+.++.+++.+++++++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~---~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~ 80 (399)
T TIGR00893 4 VINYLDRANLSFAAPMLQED---LGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAG 80 (399)
T ss_pred hHHHHHHHhhhHhHHHHHHh---hCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHc
Confidence 34456666777888888875 999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcchhhHHhhhhhhccccccccccceeeeeccCCCcchhHhHHHHHHHHHHHHHHHHhhhhh----hHHHHHHHHH
Q psy11547 180 SLPSSILPWIFTGRILTGLGSGMVGAPSRIYTAECSQPHLRGMLSSLASFGVSLGVLFEYSLGAFL----SWDTVAAIST 255 (587)
Q Consensus 180 ~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l----~wr~~f~~~~ 255 (587)
+++ .++++|+++|++.+...+...+++.|++|+++|++++++......+|.++++.+++.+ +||+.|++.+
T Consensus 81 ~~~-----~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~ 155 (399)
T TIGR00893 81 AYV-----SLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEG 155 (399)
T ss_pred CHH-----HHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHH
Confidence 998 9999999999999999999999999999999999999999999999999999999876 9999999988
Q ss_pred HHHHHHHHHhcc-cCCCchHHHhcCCHHHHHHHHHHHhCCCcchHHHHhhHHHHHHHHHHHhhhhhhHhHHhhhcCCchH
Q psy11547 256 IIPVLSIIAGCL-MPESPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQGLYEFSKRQETQKSRNFKETLAAIVEPACLK 334 (587)
Q Consensus 256 ~~~~~~~~~~~~-~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (587)
++.++..++.++ .||+|+.... .+.++.....++...+ .+.+++++.......+.++++..+.
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (399)
T TIGR00893 156 VLGIIWGVLWLKFIPDPPQKAKW-LTEEEKYIVVGGLLAE---------------QQGKGPSTPKKYQIKELLKDRRVWG 219 (399)
T ss_pred HHHHHHHHHhhheecCCCCcccc-CCHHHHhhcchhhccc---------------cccccccCCCccchHHHhcCHHHHH
Confidence 887776665554 6666532110 0111100000000000 0000001112223344454443222
Q ss_pred HHHHHHHHHHHHHhccchhhHhcHHHHHHh-cCCC-cchHHHHHHHHHHHHHHHHhHHHhhcccCCchhhH-hhhHHHHH
Q psy11547 335 PFVILMLYFLIYQFSGVNPVTFYAVNIFKD-AGAH-VNNNLAAVIMGIVRLIFTIASCIMMKKMGRRSLTF-ISSIGCGV 411 (587)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~-~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~~~~~~-~~~~~~~~ 411 (587)
.. ...+...........+.|.++.+ .+.+ .+.+.......++.+++.++.+++.||++||+... .......+
T Consensus 220 ----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 294 (399)
T TIGR00893 220 ----LA-LGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAII 294 (399)
T ss_pred ----HH-HHHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHH
Confidence 22 22222222344556667777654 6676 45567777888889999999999999999886211 11111111
Q ss_pred HHHHHHHHHHhccCCCCCCCcCccchhHHHHHHHHHHHHHhccccccceeeeeccCCCCchhhHHHHHHHHHHHHHHHHH
Q psy11547 412 SMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTV 491 (587)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~~ 491 (587)
+.+.......... .............+ .++..+..+..++++.|.+|++.|+++.|+.+....+|..++|
T Consensus 295 ~~~~~~~~~~~~~---------~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~ 364 (399)
T TIGR00893 295 AGLVLSLLMFATN---------YVNIPYAALALVAL-GFFGLGAGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGP 364 (399)
T ss_pred HHHHHHHHHHHhc---------cchhHHHHHHHHHH-HHhchhhhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhh
Confidence 1111111111100 01112222222222 2233335566678999999999999999999999999999999
Q ss_pred HhhHHHHHhhh-hhhHHHHHHHHHHHHHHHhh
Q psy11547 492 KSYNMFQTHLT-KEGTFLMYGCISLLGTIFFY 522 (587)
Q Consensus 492 ~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~ 522 (587)
.+.|.+.|..| +...+.+.+++.+++.+..+
T Consensus 365 ~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 396 (399)
T TIGR00893 365 IVIGAIAATTGSFAGALMVVAALALIGALSYL 396 (399)
T ss_pred HHhhhhccCCCchhHHHHHHHHHHHHHHHHHH
Confidence 99999999988 88888887777776665543
|
|
| >KOG0255|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-30 Score=271.64 Aligned_cols=390 Identities=22% Similarity=0.252 Sum_probs=290.7
Q ss_pred CCccCcchhHHHHHHHHHHHHHHHHhHHHhhhccchhHHHHHhhHHHHHHHHHHHhcCCCCCCcchhhHHhhhhhhcccc
Q psy11547 122 PYRITSDESTWIASLSAIGTMVGCVLGGYMMDLVGRKMTLIITEVPTILGWALIALAPSLPSSILPWIFTGRILTGLGSG 201 (587)
Q Consensus 122 ~~~~s~~~~g~i~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g 201 (587)
.+..+.....+..+++.+|..+|++++|+++||+|||+++++++++..++.++.++++|++ .+++.|+++|++.+
T Consensus 112 ~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~-----~~~~~Rfl~G~~~~ 186 (521)
T KOG0255|consen 112 LVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYW-----MFLIFRFLSGFFGS 186 (521)
T ss_pred eeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHH-----HHHHHHHHHHhhcc
Confidence 4777888999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred ccccccceeeeeccCCCcchhHhHHHHHHHHHHHHHHHHhhhhh--hHHHHHHHHHHHHHHHHHHhcccCCCchHHHhcC
Q psy11547 202 MVGAPSRIYTAECSQPHLRGMLSSLASFGVSLGVLFEYSLGAFL--SWDTVAAISTIIPVLSIIAGCLMPESPSWLLSQG 279 (587)
Q Consensus 202 ~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l--~wr~~f~~~~~~~~~~~~~~~~~~esp~~~~~~~ 279 (587)
+...+...++.|++++++|+.+..+ ......|..+++.+++++ +||+.+++..+++++.+++.++.||+|+|+..++
T Consensus 187 ~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~~Wr~~~~~~~~~~~~~~~~~~l~~Es~rwl~~~g 265 (521)
T KOG0255|consen 187 GPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITRDWRWLFWIISIPSGLFLLLWFLPPESPRWLLSKG 265 (521)
T ss_pred chhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHccCcChHHHHHcC
Confidence 9999999999999999999999999 666666666666666666 8999999999999988888666789999999999
Q ss_pred CHHHHHHHHHHHhCCCc---chHHHHhhHHHHHHHHHHHhhhhhhHhHHhhhcCCchHHHHHHHHHHHHHHhccchhhHh
Q psy11547 280 RKDACRNSLRRLRANNY---DVEKEVQGLYEFSKRQETQKSRNFKETLAAIVEPACLKPFVILMLYFLIYQFSGVNPVTF 356 (587)
Q Consensus 280 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (587)
+.+++.+.+++..+.+. .......... ..+........+...+.+.++.+..++..+.....++.. ...+
T Consensus 266 ~~~~a~~~l~~~a~~n~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~------~~~y 338 (521)
T KOG0255|consen 266 RIDEAIKILKKIAKLNGRKLSVKELLRLEL-LLRPLKLLFTEPKISFLDLFRTPRLRYRTLYLLFIWFVF------SLVY 338 (521)
T ss_pred chHHHHHHHHHHHhhcCCCCCcHHHHHHHH-HhhHhhhhccCCCCchhhhhcCHHHHHHHHHHHHHHHHH------hHHH
Confidence 99999999999876542 1111111111 111111112223345677777776666666555555321 1222
Q ss_pred cHHHHHHhcCCCcchHHHHHHHHHHHHHHHHhHHHhhcccCCchhhHhhhHHHHHHHHHHHHHHHhccCCCCCCCcCccc
Q psy11547 357 YAVNIFKDAGAHVNNNLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFV 436 (587)
Q Consensus 357 ~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (587)
+... +...+++.+.+....+.+.....+....+...|++|||.....+.++..+++++.++.... ..
T Consensus 339 ~gl~-~~~~~lg~~~~~~~~~~~~~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~------------~~ 405 (521)
T KOG0255|consen 339 YGLS-LNVSGLGGNIYLNFTLSGLVELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDD------------LG 405 (521)
T ss_pred Hhhh-hhhhhcCchHHHHHHHHHHHHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhcc------------ch
Confidence 2211 2222344456666666667888888888999999999999999999999998888875543 11
Q ss_pred hhHHHHHHHHHHHHHhccccccceeeeeccCCCCchhhHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhHHHHHHHHHHH
Q psy11547 437 SYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLTKEGTFLMYGCISLL 516 (587)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~ 516 (587)
.+...+...+..++...++... +.+.+|++|+..|+.+.+.......++.+++|.+...... ......+.+++.+..+
T Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~-~~~~~~~~~~~~~~~l 483 (521)
T KOG0255|consen 406 GWLHWILPLLGKFFIGSAFNLI-FLYSAELIPTVVRNTAVGAISAAARLGSILAPLFPLLLRQ-MFPLLGLILFGWLALL 483 (521)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH-HHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hcccchHHHHHHHHHH
Confidence 1233333333344444444444 6889999999999999999999999999999887654433 2333333335667777
Q ss_pred HHHHhheecccCCCCCHHHHHHH
Q psy11547 517 GTIFFYVYLPETKNKTLQEIEEQ 539 (587)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~~ 539 (587)
.++++.+++||++++.+.+..++
T Consensus 484 ~~~~~~~~lpet~~~~l~~t~~~ 506 (521)
T KOG0255|consen 484 LGLLSLLLLPETKGKPLPGTLLD 506 (521)
T ss_pred HHHHHHhcCcccCCCCCchhHHH
Confidence 77777788999999887554433
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-31 Score=271.57 Aligned_cols=367 Identities=15% Similarity=0.116 Sum_probs=263.9
Q ss_pred cccccHHHHHhhhcCCCCCccCcchhHHHHHHHHHHHHHHHHhHHHhhhccchhHHHHHhhHHHHHHHHHHHh-----cC
Q psy11547 105 VFGFSAAATSQLISRDSPYRITSDESTWIASLSAIGTMVGCVLGGYMMDLVGRKMTLIITEVPTILGWALIAL-----AP 179 (587)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~s~~~~g~i~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~-----~~ 179 (587)
..+...+.+|.+..+ ++.+..+.|++.+.+.++..+++++.|+++||+|||+++..+.++.+++.+..++ .+
T Consensus 32 ~~~~~~~~~~~~~~~---~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 108 (417)
T PRK10489 32 GLGLLGVAVPVQIQM---MTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFLPEP 108 (417)
T ss_pred HHHHHHHHHHHHHHH---HHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHcCCC
Confidence 344556777887764 7889999999999999999999999999999999999999998888877766543 34
Q ss_pred CCCCCcchhhHHhhhhhhccccccccccceeeeeccCCCcchhHhHHHHHHHHHHHHHHHHhhhhh----hHHHHHHHHH
Q psy11547 180 SLPSSILPWIFTGRILTGLGSGMVGAPSRIYTAECSQPHLRGMLSSLASFGVSLGVLFEYSLGAFL----SWDTVAAIST 255 (587)
Q Consensus 180 ~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l----~wr~~f~~~~ 255 (587)
+++ .+++.|+++|++.+...+...+++.|++|+++|+++.++...+..+|..+|+.+++.+ +|++.|++.+
T Consensus 109 ~~~-----~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~ 183 (417)
T PRK10489 109 SLL-----AIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLAA 183 (417)
T ss_pred cHH-----HHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHH
Confidence 556 8889999999998888888899999999999999999999999999999999999877 8999999988
Q ss_pred HHHHHHHHHhcccCCCchHHHhcCCHHHHHHHHHHHhCCCcchHHHHhhHHHHHHHHHHHhhhhhhHhHHhhhcCCchHH
Q psy11547 256 IIPVLSIIAGCLMPESPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQGLYEFSKRQETQKSRNFKETLAAIVEPACLKP 335 (587)
Q Consensus 256 ~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (587)
+..++..++.+.+|++++.. +++.+. .+...+.....++++..+..
T Consensus 184 ~~~~~~~~~~~~l~~~~~~~--~~~~~~--------------------------------~~~~~~~~~~~~~~~~~~~~ 229 (417)
T PRK10489 184 AGTFITLLPLLRLPALPPPP--QPREHP--------------------------------LRSLLAGFRFLLASPVVGGI 229 (417)
T ss_pred HHHHHHHHHHHhCCCCCCCC--cccccc--------------------------------hHHHHHHHHHHHcChHHHHH
Confidence 88777766666677754210 000000 00001112223333332221
Q ss_pred HHHHHHHHHHHHhccchhhHhcHHHHHHh-cCCC-cchHHHHHHHHHHHHHHHHhHHHhhcccCCchhhHhhhHHHHHHH
Q psy11547 336 FVILMLYFLIYQFSGVNPVTFYAVNIFKD-AGAH-VNNNLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSM 413 (587)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~-~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~~~~~~~~~~~~~~~~ 413 (587)
. +...... . ......+.|.+.++ .|.+ ...+.......++.+++.++.+++.||.++++.+..+.++.+++.
T Consensus 230 ~-~~~~~~~---~--~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~ 303 (417)
T PRK10489 230 A-LLGGLLT---M--ASAVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAV 303 (417)
T ss_pred H-HHHHHHH---H--HHhHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHH
Confidence 1 1111111 1 22344566777776 6777 445677777888899999999999999877777777776666665
Q ss_pred HHHHHHHHhccCCCCCCCcCccchhHHHHHHHHHHHHHhccccccceeeeeccCCCCchhhHHHHHHHHHHHHHHHHHHh
Q psy11547 414 TGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKS 493 (587)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~~~~ 493 (587)
+++.. ....+...+..++++.+.. ...+...+++.|..|++.||++.|+.+....+|..+++.+
T Consensus 304 ~~~~~---------------~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l 367 (417)
T PRK10489 304 GLFGL---------------MPMWILAVLCLALFGYLSA-ISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAAL 367 (417)
T ss_pred HHHHc---------------cchHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHH
Confidence 54443 1122222233333333222 2234445788899999999999999999999999999999
Q ss_pred hHHHHHhhhhhhHHHHHHHHHHHHHHHhheecccCCCCCHHH
Q psy11547 494 YNMFQTHLTKEGTFLMYGCISLLGTIFFYVYLPETKNKTLQE 535 (587)
Q Consensus 494 ~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (587)
.|.+.+..|+...+...+++.++..++.....++.|+++.+|
T Consensus 368 ~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (417)
T PRK10489 368 LGGLGAMMTPVASASASGFGLLIIGVLLLLVLGELRRFRQTP 409 (417)
T ss_pred HHHHHHHhchhhHHHHHHHHHHHHHHHHHHhccccccccccc
Confidence 999999999888888888777777776666667766655443
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-31 Score=273.31 Aligned_cols=402 Identities=14% Similarity=0.059 Sum_probs=261.9
Q ss_pred HHHHHHHHHhhhhhhccccccHHHHHhhhcCCCCCccCcchhHHHHHHHHHHHHHHHHhHHHhhhccchhHHHHHhhHHH
Q psy11547 89 LTLAVFANLGNVNTGMVFGFSAAATSQLISRDSPYRITSDESTWIASLSAIGTMVGCVLGGYMMDLVGRKMTLIITEVPT 168 (587)
Q Consensus 89 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~i~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~ 168 (587)
+.......++......+........|.+.+ +|+++++.+++.+++.++..+++++.|+++||+|||+++.++.++.
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~----~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~ 101 (438)
T TIGR00712 26 WQVFLGIFFGYAAYYLVRKNFALAMPYLVE----QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILS 101 (438)
T ss_pred HHHHHHHHHHHHHHHHHhccHHhhhHHHHH----cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHH
Confidence 444455555666666666666777787765 6899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCcchhhHHhhhhhhccccccccccceeeeeccCCCcchhHhHHHHHHHHHHHHHHHHhhhhh---
Q psy11547 169 ILGWALIALAPSLPSSILPWIFTGRILTGLGSGMVGAPSRIYTAECSQPHLRGMLSSLASFGVSLGVLFEYSLGAFL--- 245 (587)
Q Consensus 169 ~i~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l--- 245 (587)
+++.+++++.++.. ...+.+.+.|++.|++.|..++....++.|++|+++|++++++++.+..+|..+++.+....
T Consensus 102 ~~~~~~~~~~~~~~-~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~ 180 (438)
T TIGR00712 102 AAVMLLMGFVPWAT-SSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAW 180 (438)
T ss_pred HHHHHHHhcccccc-chHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 99998887754221 01126778999999999999898889999999999999999999999999999988766543
Q ss_pred --hHHHHHHHHHHHHHHHHHHh-cccCCCchHHHhcCCHHHHHHHHHHHhCCCcchHHHHhhHHHHHHHHHHHhhhhhhH
Q psy11547 246 --SWDTVAAISTIIPVLSIIAG-CLMPESPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQGLYEFSKRQETQKSRNFKE 322 (587)
Q Consensus 246 --~wr~~f~~~~~~~~~~~~~~-~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (587)
+||+.|++.++++++..++. +++||+|+....+. .++. +.+.... .. ++.+ .+...++.
T Consensus 181 ~~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~-------~~~~~~~--~~-------~~~~-~~~~~~~~ 242 (438)
T TIGR00712 181 FNDWHAALYFPAICAIIVALFAFAMMRDTPQSCGLPP-IEEY-------RNDYPDD--YN-------EKAE-QELTAKEI 242 (438)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhccCCHHhcCCCC-chhc-------ccccccc--cc-------cccc-cccchHHH
Confidence 89999999988887765444 44788765321000 0000 0000000 00 0000 00000111
Q ss_pred h-HHhhhcCCchHHHHHHHHHHHHHHhccchhhHhcHHHHHHh-cCCC-cchHHHHHHHHHHHHHHHHhHHHhhcccCCc
Q psy11547 323 T-LAAIVEPACLKPFVILMLYFLIYQFSGVNPVTFYAVNIFKD-AGAH-VNNNLAAVIMGIVRLIFTIASCIMMKKMGRR 399 (587)
Q Consensus 323 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~-~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~~ 399 (587)
. ...++++.++...+... ......+....+.|.++++ .|++ ...+....+..+.++++.++.+++.||++++
T Consensus 243 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~ 317 (438)
T TIGR00712 243 FMQYVLPNKLLWYIAIANV-----FVYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKG 317 (438)
T ss_pred HHHHHccCchHHHHHHHHH-----HHHHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 1 12344444332222111 1122234466678888876 5776 4556777778888999999999999999654
Q ss_pred hhhHhhhHHHHHHHHHHHHHHHhccCCCCCCCcCccchhHHHHHHHHHHHHHhccccccceeeeeccCCCCchhhHHHHH
Q psy11547 400 SLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLT 479 (587)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~ 479 (587)
+....+.....+..+........ . ....+......+.++.+ ..+..........|.+|++.|+++.|+.
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~--~--------~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~g~~~g~~ 386 (438)
T TIGR00712 318 NRGATGVFFMTLVTIAVIVYWMN--P--------AGNPLVDMICMIVIGFL-IYGPVMLIGLHALELAPKKAAGTAAGFT 386 (438)
T ss_pred cccHHHHHHHHHHHHHHHHHHhc--C--------CCchHHHHHHHHHHHHH-HccHHHHHHHHHHHhcChhheeeehhhh
Confidence 32222322222221111111111 0 01122221222222211 1111111123567899999999999999
Q ss_pred HHHHHHHH-HHHHHhhHHHHHhhhhhhHHHHHHHHHHHHHHHhheecccCC
Q psy11547 480 TCACHFFI-FLTVKSYNMFQTHLTKEGTFLMYGCISLLGTIFFYVYLPETK 529 (587)
Q Consensus 480 ~~~~~~g~-~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 529 (587)
+...++++ +++|.+.|.+.|..|+...+.+.+++.+++.+..++..+|.|
T Consensus 387 ~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (438)
T TIGR00712 387 GLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEK 437 (438)
T ss_pred chHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 99988875 689999999999999999998888888888777777777655
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-31 Score=271.28 Aligned_cols=364 Identities=14% Similarity=0.104 Sum_probs=233.3
Q ss_pred hhhhccccccHHHHHhhhcCCCCCccCcchhHHHHHHHHHHHHHHHHhHHHhhhccchhHHHHHhhHHHHHHHHHHHhcC
Q psy11547 100 VNTGMVFGFSAAATSQLISRDSPYRITSDESTWIASLSAIGTMVGCVLGGYMMDLVGRKMTLIITEVPTILGWALIALAP 179 (587)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~i~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~ 179 (587)
+...+......+.+|.+.++ +|++..+.+++.+.+.+++.+++++.|+++||+|||+++.++.++++++.+++++++
T Consensus 46 ~~~~~~~~~~~~~~~~l~~~---~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~ 122 (476)
T PLN00028 46 FTCFVSTFAAAPLLPIIRDN---LNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLVS 122 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHH---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhc
Confidence 33344444566788888885 999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcchhhHHhhhhhhccccccccccceeeeeccCCCcchhHhHHHHHHHHHHHHHHHHhhhh-------------hh
Q psy11547 180 SLPSSILPWIFTGRILTGLGSGMVGAPSRIYTAECSQPHLRGMLSSLASFGVSLGVLFEYSLGAF-------------LS 246 (587)
Q Consensus 180 ~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~-------------l~ 246 (587)
+++ .++++|+++|++.+.. .....++.|++|+++|++++++......+|..+++.+... .+
T Consensus 123 s~~-----~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~g 196 (476)
T PLN00028 123 SAT-----GFIAVRFFIGFSLATF-VSCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTA 196 (476)
T ss_pred CHH-----HHHHHHHHHHHHHHhh-HHHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhh
Confidence 998 8999999999988765 3455678999999999999999976666666555443322 27
Q ss_pred HHHHHHHHHHHHHHHHHHhcccC-CCchHHHhcCCHHHHHHHHHHHhCCCcchHHHHhhHHHHHHHHHHHhhhhhhHhHH
Q psy11547 247 WDTVAAISTIIPVLSIIAGCLMP-ESPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQGLYEFSKRQETQKSRNFKETLA 325 (587)
Q Consensus 247 wr~~f~~~~~~~~~~~~~~~~~~-esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (587)
||+.|++.+++.++..++.++++ +.|+ ++.++.. +.. +.++....+.+.+
T Consensus 197 Wr~~f~i~g~l~l~~~l~~~~~~~~~p~-----~~~~~~~-------~~~-----------------~~~~~~~~~~~~~ 247 (476)
T PLN00028 197 WRIAFFVPGLLHIIMGILVLTLGQDLPD-----GNYRELK-------KSG-----------------TMPKDSFSKVLRY 247 (476)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHcCcCCC-----CchhhHH-------hcC-----------------ccccccHHHHHHH
Confidence 99999999998887766665544 3331 1100000 000 0000001122333
Q ss_pred hhhcCCchHHHHHHHHHHHHHHhccchhhHhcHHHHHHh-cCCC-cchHHHHHHHHHHHHHHHHhHHHhhcccCCch---
Q psy11547 326 AIVEPACLKPFVILMLYFLIYQFSGVNPVTFYAVNIFKD-AGAH-VNNNLAAVIMGIVRLIFTIASCIMMKKMGRRS--- 400 (587)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~-~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~~~--- 400 (587)
.++++..+...+ ..+ ..+........+.|.++.+ .|++ ...+....+..++.+++++++|+++||++||.
T Consensus 248 ~~~~~~~~~~~~----~~~-~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~ 322 (476)
T PLN00028 248 GVTNYRTWILAL----TYG-YSFGVELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMR 322 (476)
T ss_pred HHcCchhHHHHH----HHH-HHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcc
Confidence 444444332111 111 1111122344556666554 6887 55667777888999999999999999998652
Q ss_pred ----hhHhhhHHHHHHHHHHHHHHHhccCCCCCCCcCccchhHHHHHHHHHHHHHhccccccceeeeeccCCCCchhhHH
Q psy11547 401 ----LTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVG 476 (587)
Q Consensus 401 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~ 476 (587)
...+..++.++..+++.. ..+.+.....++++..+..... +..+++..+..| +.+|++.
T Consensus 323 ~r~~~~~~~~~l~~i~~~~~~~---------------~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~-~~~g~~~ 385 (476)
T PLN00028 323 GRLWALWIVQTLGGVFCIWLGR---------------ANSLGAAIVVMILFSIFVQAAC-GATFGIVPFVSR-RSLGVIS 385 (476)
T ss_pred hhHHHHHHHHHHHHHHHHHhcc---------------cchHHHHHHHHHHHHHHHHHhh-hhhcccCcccCh-hhchhhh
Confidence 111222222121111111 1122222222333333322222 223455666554 6789999
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHhhhhhhHHHHHHHHHHHHHHHhhee
Q psy11547 477 GLTTCACHFFIFLTVKSYNMFQTHLTKEGTFLMYGCISLLGTIFFYVY 524 (587)
Q Consensus 477 g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 524 (587)
|+.+..+.+|+++++.+.+ ..+..+|...|++.+++.+++.++.++.
T Consensus 386 g~~~~~g~lg~~i~~~l~~-~~~~~~y~~~f~~~~~~~~i~~~~~~~~ 432 (476)
T PLN00028 386 GLTGAGGNVGAVLTQLLFF-TGSSYSTETGISLMGVMIIACTLPVAFI 432 (476)
T ss_pred hhhhccccHHHHHHHHHHH-hcCCccHhhHHHHHHHHHHHHHHHHHhe
Confidence 9988877778877776654 2233457888888887777776655433
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-31 Score=262.97 Aligned_cols=359 Identities=14% Similarity=0.123 Sum_probs=252.5
Q ss_pred HHHHhhhhhhccccccHHHHHhhhcCCCCCccCcchhHHHHHHHHHHHHHHHHhHHHhhhccchhHHHHHhhHHHHHHHH
Q psy11547 94 FANLGNVNTGMVFGFSAAATSQLISRDSPYRITSDESTWIASLSAIGTMVGCVLGGYMMDLVGRKMTLIITEVPTILGWA 173 (587)
Q Consensus 94 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~i~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~ 173 (587)
...++.+..+.......+.+|.+.++ +|.+..+.|++.+.+.+++.++++++|+++||+|||+++.++.++.+++.+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~ 83 (382)
T PRK10091 7 SLALGTFGLGMAEFGIMGVLTELAHD---VGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNA 83 (382)
T ss_pred HHHHHHHHHHhhHHHHHhChHHHHHH---cCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHH
Confidence 34445556677777777888998885 999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCCcchhhHHhhhhhhccccccccccceeeeeccCCCcchhHhHHHHHHHHHHHHHHHHhhhhh----hHHH
Q psy11547 174 LIALAPSLPSSILPWIFTGRILTGLGSGMVGAPSRIYTAECSQPHLRGMLSSLASFGVSLGVLFEYSLGAFL----SWDT 249 (587)
Q Consensus 174 ~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l----~wr~ 249 (587)
+++++++++ .+++.|+++|++.+...+...+++.|++++++|++++++...+..+|..+++++++++ +||+
T Consensus 84 l~~~~~~~~-----~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~ 158 (382)
T PRK10091 84 MFTLSSSYL-----MLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRY 158 (382)
T ss_pred HHHHhCcHH-----HHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHH
Confidence 999999999 9999999999999988888888899999999999999999999999999999998877 8999
Q ss_pred HHHHHHHHHHHHHHHhc-ccCCCchHHHhcCCHHHHHHHHHHHhCCCcchHHHHhhHHHHHHHHHHHhhhhhhHhHHhhh
Q psy11547 250 VAAISTIIPVLSIIAGC-LMPESPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQGLYEFSKRQETQKSRNFKETLAAIV 328 (587)
Q Consensus 250 ~f~~~~~~~~~~~~~~~-~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (587)
.|++.+++.++..+..+ .+||.++. .+.+ .+...+.++
T Consensus 159 ~f~~~~~~~~~~~~~~~~~lp~~~~~----~~~~-------------------------------------~~~~~~~~~ 197 (382)
T PRK10091 159 TFLLIAVFNIAVLASIYFWVPDIRDE----AKGG-------------------------------------LREQFHFLR 197 (382)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCcc----cccC-------------------------------------HHHHHHHhc
Confidence 99999888776655444 37775310 0000 000112233
Q ss_pred cCCchHHHHHHHHHHHHHHhccchhhHhcHHHHHH-hcCCC-cchHHHHHHHHHHHHHHHHhHHHhhcccCCchhhHhhh
Q psy11547 329 EPACLKPFVILMLYFLIYQFSGVNPVTFYAVNIFK-DAGAH-VNNNLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISS 406 (587)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~-~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~~~~~~~~~ 406 (587)
++..+.. ..... ....+......+.+.++. ..|++ ...+......+++.+++.++.+++.||+++|+.+..+.
T Consensus 198 ~~~~~~~----~~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~ 272 (382)
T PRK10091 198 SPAPWLI----FAATM-FGNAGVFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTD 272 (382)
T ss_pred ChHHHHH----HHHHH-HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHH
Confidence 3322211 11111 111112222334444444 46777 45567778888999999999999999999999888877
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCCCcCccchhHHHHHHHHHHHHHhccccccceeeeeccCCCCchhhHHHHHHHHHHHH
Q psy11547 407 IGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFF 486 (587)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g 486 (587)
.+.+++.+++.... ...+......++...+......+.......+..+.+.++.+ ..+....+|
T Consensus 273 ~~~~i~~~~~~~~~--------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g 336 (382)
T PRK10091 273 FIIVLALLMLFFFG--------------GMKTASLIFAFICCAGLFALSAPLQILLLQNAKGGELLGAA--GGQIAFNLG 336 (382)
T ss_pred HHHHHHHHHHHHHH--------------hhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcchHHHHH--HHHHHHHHH
Confidence 77666665443311 11222222222232222222222222333444455554443 446778899
Q ss_pred HHHHHHhhHHHHHh-hhhhhHHHHHHHHHHHHHHHhh
Q psy11547 487 IFLTVKSYNMFQTH-LTKEGTFLMYGCISLLGTIFFY 522 (587)
Q Consensus 487 ~~i~~~~~g~l~~~-~g~~~~~~~~~~~~~~~~~~~~ 522 (587)
.++||.+.|.+.|. .++...+...++++++......
T Consensus 337 ~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (382)
T PRK10091 337 SAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSLL 373 (382)
T ss_pred HHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHHHH
Confidence 99999999999996 5787777776666555544433
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-31 Score=265.06 Aligned_cols=349 Identities=15% Similarity=0.159 Sum_probs=245.5
Q ss_pred hccccccHHHHHhhhcCCCCCccCcchhHHHHHHHHHHHHHHHHhHHHhhhccchhHHHHHhhHHHHHHHHHHH---hc-
Q psy11547 103 GMVFGFSAAATSQLISRDSPYRITSDESTWIASLSAIGTMVGCVLGGYMMDLVGRKMTLIITEVPTILGWALIA---LA- 178 (587)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~i~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~---~~- 178 (587)
....+...+.+|....+ ++|.|..+.|++.+++.+++.++++++|+++||+|||++++.+.++..++.+... +.
T Consensus 28 ~~~~~~~~p~l~~~l~~--~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~ 105 (392)
T PRK12382 28 YMTVGLPLPVIPLFVHH--DLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLLAAILP 105 (392)
T ss_pred HHHHHHHhhhhhHHHHH--hcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhhhccc
Confidence 34455556777764332 4999999999999999999999999999999999999999999888777655432 22
Q ss_pred ----CCCCCCcchhhHHhhhhhhccccccccccceeeeeccCCCcchhHhHHHHHHHHHHHHHHHHhhhhh----hHHHH
Q psy11547 179 ----PSLPSSILPWIFTGRILTGLGSGMVGAPSRIYTAECSQPHLRGMLSSLASFGVSLGVLFEYSLGAFL----SWDTV 250 (587)
Q Consensus 179 ----~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l----~wr~~ 250 (587)
++++ .++++|+++|++.+...+...+++.|++|+++|++++++.+.+..+|.+++|++++.+ +||+.
T Consensus 106 ~~~~~~~~-----~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~ 180 (392)
T PRK12382 106 VSAPFKFA-----LLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHFGFAAL 180 (392)
T ss_pred cchhHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhccChHHH
Confidence 3445 8899999999999988888888999999999999999999999999999999998876 89988
Q ss_pred HHHHHHHHHHHHHHhcccCCCchHHHhcCCHHHHHHHHHHHhCCCcchHHHHhhHHHHHHHHHHHhhhhhhHhHHhhhcC
Q psy11547 251 AAISTIIPVLSIIAGCLMPESPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQGLYEFSKRQETQKSRNFKETLAAIVEP 330 (587)
Q Consensus 251 f~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (587)
+.+..+..++.+......||.+.. ++ ++.+.++..+.+
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~---~~------------------------------------~~~~~~~~~~~~--- 218 (392)
T PRK12382 181 ALTTMVLPLLAWAFNGTVRKVPAH---AG------------------------------------ERPSLWSVVGLI--- 218 (392)
T ss_pred HHHHHHHHHHHHHHHHhccCCCCC---cc------------------------------------cCchHHHHHHHH---
Confidence 777665554443332224443210 00 000000001111
Q ss_pred CchHHHHHHHHHHHHHHhccchhhHhcHHHHHHhcCCCcchHHHHHHHHHHHHHHHHhHHHhhcccCCchhhHhhhHHHH
Q psy11547 331 ACLKPFVILMLYFLIYQFSGVNPVTFYAVNIFKDAGAHVNNNLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCG 410 (587)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~~~~~~~~~~~~~ 410 (587)
+...+...... ........+.+.++++.+.+ ..+......+++.+++.++.+++.||+++|+.+..+..+.+
T Consensus 219 --~~~~~~~~l~~-----~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~ 290 (392)
T PRK12382 219 --WKPGLGLALQG-----VGFAVIGTFVSLYFASKGWA-MAGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVET 290 (392)
T ss_pred --HHhHHHHHHHH-----HHHhHHHHHHHHHHHhcCCc-hhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHH
Confidence 11111111111 11223445566666766655 34455556677788899999999999999998888877777
Q ss_pred HHHHHHHHHHHhccCCCCCCCcCccchhHHHHHHHHHHHHHhccccccceeeeeccCCCCchhhHHHHHHHHHHHHHHHH
Q psy11547 411 VSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLT 490 (587)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~ 490 (587)
++.+++.. ..+.+.......+.+.+.+. ..+...+...+.+|++.|+++.|+.++...+|..++
T Consensus 291 ~~~~~~~~---------------~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig 354 (392)
T PRK12382 291 VGLLLLWL---------------APTAWVALAGAALTGAGCSL-IFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVS 354 (392)
T ss_pred HHHHHHHH---------------cccHHHHHHHHHHHHHHHHh-HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 76655443 11223333333333333332 233334667788999999999999999999999999
Q ss_pred HHhhHHHHHhhhhhhHHHHHHHHHHHHHHHhhee
Q psy11547 491 VKSYNMFQTHLTKEGTFLMYGCISLLGTIFFYVY 524 (587)
Q Consensus 491 ~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 524 (587)
|.+.|.+.|..|+...|.+.+++.+++.++.+..
T Consensus 355 ~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 388 (392)
T PRK12382 355 GPLAGMLATSFGYPSVFLAGAISAVLGIIVTILS 388 (392)
T ss_pred HHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999998888877777665443
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-32 Score=276.44 Aligned_cols=387 Identities=15% Similarity=0.130 Sum_probs=253.6
Q ss_pred HHHHHHHHHhhhhhhccccccHHHHHhhhcCCCCCccCcchhHHHHHHHHHHHHHHHHhHHHhhhccchhHHHHHhhHHH
Q psy11547 89 LTLAVFANLGNVNTGMVFGFSAAATSQLISRDSPYRITSDESTWIASLSAIGTMVGCVLGGYMMDLVGRKMTLIITEVPT 168 (587)
Q Consensus 89 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~i~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~ 168 (587)
|.++..+.++...........+..+|.+.++ +|.+.++.+++.+.+.++..++.+++|+++||+|||++++.+.++.
T Consensus 18 w~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~---~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~ 94 (455)
T TIGR00892 18 WVVLGATFVSIGFSYAFPKAVTVFFKELQQI---FQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLA 94 (455)
T ss_pred hHHHHHHHHHHHHHHhhhcchhhhHHHHHHH---hCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHH
Confidence 3344444444333233345566778888885 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCcchhhHH-hhhhhhccccccccccceeeeeccCCCcchhHhHHHHHHHHHHHHHHHHhhhhh--
Q psy11547 169 ILGWALIALAPSLPSSILPWIFT-GRILTGLGSGMVGAPSRIYTAECSQPHLRGMLSSLASFGVSLGVLFEYSLGAFL-- 245 (587)
Q Consensus 169 ~i~~~~~~~~~~~~~~~~~~l~~-~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l-- 245 (587)
++++++++++++++ .+++ .|+++|++.+...+...+++.++++ ++|+++.++...+..+|..++|++++.+
T Consensus 95 ~~~~~~~~~~~~~~-----~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~ 168 (455)
T TIGR00892 95 SLGMILASFSSNVI-----ELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFE 168 (455)
T ss_pred HHHHHHHHHhhhHH-----HHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 99999999999988 7764 5799999998877777888889996 6799999999999999999999988877
Q ss_pred --hHHHHHHHHHHHHHHHHHHhccc-CCCchHHHhcCCHHHHHHHHHHHhCCCcchHHHHhhHHHHHHHHHHHhhhhhhH
Q psy11547 246 --SWDTVAAISTIIPVLSIIAGCLM-PESPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQGLYEFSKRQETQKSRNFKE 322 (587)
Q Consensus 246 --~wr~~f~~~~~~~~~~~~~~~~~-~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (587)
+||+.|++.+++.++..+..+++ ++.+... +.+.++ . ......+. .+ +.. .....++.....
T Consensus 169 ~~gwr~~f~~~~~~~~~~~v~~~~~~~~~~~~~--~~~~~~-~---~~~~~~~~-~~----~~~----~~~~~~~~~~~~ 233 (455)
T TIGR00892 169 SFGWRGSFLILGGLLLHCCVCGALMRPVGPSQR--VSKSKS-K---EGLPPDGS-TK----KLS----KKSTAEKINRFL 233 (455)
T ss_pred HhChHHHHHHHHHHHHHHHHHHHHhCCCCcccc--cccccc-c---ccCCCCCc-cc----ccc----ccchhhhhhhhc
Confidence 99999999998877665554443 3222100 000000 0 00000000 00 000 000000000001
Q ss_pred hHHhhhcCCchHHHHHHHHHHHHHHhccchhhHhcHHHHHHhcCCC-cchHHHHHHHHHHHHHHHHhHHHhhccc--CCc
Q psy11547 323 TLAAIVEPACLKPFVILMLYFLIYQFSGVNPVTFYAVNIFKDAGAH-VNNNLAAVIMGIVRLIFTIASCIMMKKM--GRR 399 (587)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~i~~~~~g~l~d~~--g~~ 399 (587)
..+.++++.++.... ..+...........+.+.+.++.|++ ...+....+.+++.++++++.+++.||. +++
T Consensus 234 ~~~~~~~~~~~~~~~-----~~~l~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~ 308 (455)
T TIGR00892 234 DFSLFTHRGFLVYLS-----GNVIMFLGFFAPIIFLVPYAKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPH 308 (455)
T ss_pred chHHhcCchHHHHHH-----HHHHHHHHccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHH
Confidence 123455544332211 11111222334455667777777887 5556777778888999999999999974 333
Q ss_pred hhhHhhh--HHHHHHHHHHHHHHHhccCCCCCCCcCccchhHHHHHHHHHHHHHhccccccceeeeeccCCCCchhhHHH
Q psy11547 400 SLTFISS--IGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGG 477 (587)
Q Consensus 400 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g 477 (587)
+...++. ++.+++.++... . .+.+...+..++++.+.+ ...+...+++.|.+|++.++++.|
T Consensus 309 ~~~~~~~~~~~~~l~~ll~~~---~------------~~~~~~~i~~~~~G~~~g-~~~~~~~~~~~~~~~~~~~g~~~g 372 (455)
T TIGR00892 309 VQYLFSFALLFNGLTHLLCAL---A------------GDYTGLVIYCIFFGLSFG-SVGALLFEVLMDLVGAQRFSSAVG 372 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---h------------chHHHHHHHHHHHHHHhc-hHHHHHHHHHHHHhhHHHHhhHHh
Confidence 3333222 222222222211 1 223333333344443333 333444578889999999999999
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHhhh-hhhHHHHHHHHHHHHHHH
Q psy11547 478 LTTCACHFFIFLTVKSYNMFQTHLT-KEGTFLMYGCISLLGTIF 520 (587)
Q Consensus 478 ~~~~~~~~g~~i~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~ 520 (587)
+.+....+|.+++|.++|.+.+..| +...|++.+++.+++.+.
T Consensus 373 ~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~~ 416 (455)
T TIGR00892 373 LVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGLF 416 (455)
T ss_pred HHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHHH
Confidence 9999999999999999999999874 778888777766665543
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-30 Score=257.14 Aligned_cols=367 Identities=14% Similarity=0.069 Sum_probs=259.4
Q ss_pred HHHhhhhhhccccccHHHHHhhhcCCCCCccCcchhHHHHHHHHHHHHHHHHhHHHhhhccchhHHHHHhhHHHHHHHHH
Q psy11547 95 ANLGNVNTGMVFGFSAAATSQLISRDSPYRITSDESTWIASLSAIGTMVGCVLGGYMMDLVGRKMTLIITEVPTILGWAL 174 (587)
Q Consensus 95 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~i~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~ 174 (587)
..++.+..-......+++.+.+.++ ++|+|.+|.+++.+++.+++.++.++.|++.||+|.|+++.++.+++++.+++
T Consensus 39 s~~~f~~~F~~w~~~~~l~~~~~~~--~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~ 116 (462)
T PRK15034 39 SVSCLLLAFCVWMLFSAVTVNLNKI--GFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVW 116 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhh--hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHH
Confidence 3333444444555667777777653 49999999999999999999999999999999999999999999999999999
Q ss_pred HHhc-----CCCCCCcchhhHHhhhhhhccccccccccceeeeeccCCCcchhHhHHHHHHHHHHHHHHHHhhhhh----
Q psy11547 175 IALA-----PSLPSSILPWIFTGRILTGLGSGMVGAPSRIYTAECSQPHLRGMLSSLASFGVSLGVLFEYSLGAFL---- 245 (587)
Q Consensus 175 ~~~~-----~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l---- 245 (587)
.+++ ++++ .+++.|++.|++ |..++.....+++|+|+++||+++++.....++|..+++++...+
T Consensus 117 ~~~a~~~~~~s~~-----~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~ 190 (462)
T PRK15034 117 LGIAVQNPNTPFG-----IFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVP 190 (462)
T ss_pred HHHHHcccCCCHH-----HHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 9987 7787 999999999997 778899999999999999999999999766666665554433221
Q ss_pred ------------------hHHHHHHHHHHHHHHHHHHhcc-cCCCchHHHhcCCHHHHHHHHHHHhCCCcchHHHHhhHH
Q psy11547 246 ------------------SWDTVAAISTIIPVLSIIAGCL-MPESPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQGLY 306 (587)
Q Consensus 246 ------------------~wr~~f~~~~~~~~~~~~~~~~-~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (587)
+||..+++.+++.++..++.++ +++.|.
T Consensus 191 l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~~--------------------------------- 237 (462)
T PRK15034 191 VFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDIAS--------------------------------- 237 (462)
T ss_pred HHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCccc---------------------------------
Confidence 3788888888877776666555 443321
Q ss_pred HHHHHHHHHhhhhhhHhHHhhhcCCchHHHHHHHHHHHHHHhccchhhHhcHHHHHHhcCCC-cchHHHHHHHHHHHHHH
Q psy11547 307 EFSKRQETQKSRNFKETLAAIVEPACLKPFVILMLYFLIYQFSGVNPVTFYAVNIFKDAGAH-VNNNLAAVIMGIVRLIF 385 (587)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~i~ 385 (587)
.+...++..+.+|++..|...++. +..+..+..+.++.|++.++ .++ ........+..+...+.
T Consensus 238 ---------~~~~~~~~~~vlk~~~~Wllslly-----~~tFG~fvg~s~~lp~~~~~-~~~~~~~l~~~~l~~l~~~l~ 302 (462)
T PRK15034 238 ---------SRASIADQLPVLQRLHLWLLSLLY-----LATFGSFIGFSAGFAMLAKT-QFPDVNILRLAFFGPFIGAIA 302 (462)
T ss_pred ---------cccCHHHHHHHhCCCchhHHHHHH-----HHHHHHHHHHHHHHHHHHHH-HcChHHHHHHHHHHHHHHHHH
Confidence 111233455667777654432222 22333455567778888766 344 22233344566788899
Q ss_pred HHhHHHhhcccCCchhhHhhhHHHHHHHHHHHHHHHhccCCCCCCCcCccchhHHHHHHHHHHHHHhccccccceeeeec
Q psy11547 386 TIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGE 465 (587)
Q Consensus 386 ~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (587)
++++|+++||+|+++++.++++.+.++...+...... +. ....+.....++.+....+.+..++ +-++.+
T Consensus 303 rplgG~LADRiG~~~vl~~~~i~~~i~~~~~~l~lp~--~~-------~~~~~~~~~~~~~l~~~~G~gngsv-fk~ip~ 372 (462)
T PRK15034 303 RSVGGAISDKFGGVRVTLINFIFMAIFSALLFLTLPG--TG-------SGNFIAFYAVFMGLFLTAGLGSGST-FQMIAV 372 (462)
T ss_pred HHhhHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhcc--cc-------ccHHHHHHHHHHHHHHHhcccchHH-HHhhHH
Confidence 9999999999999999998888776665443332211 00 0112222222333333444444343 467777
Q ss_pred cCCC---------------------CchhhHHHHHHHHHHHHHHHHHHhhHHHHHhhh-hhhHHHHHHHHHHHHHHHhhe
Q psy11547 466 VYPT---------------------KVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLT-KEGTFLMYGCISLLGTIFFYV 523 (587)
Q Consensus 466 ~~p~---------------------~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~ 523 (587)
++|+ +.-|.+.|+....+.+|+++.|.++|...+..| +...|+.+.+..+++.++.+.
T Consensus 373 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~ 452 (462)
T PRK15034 373 IFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWL 452 (462)
T ss_pred HHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHH
Confidence 7774 145788999999999999999999999988866 555788888888888887776
Q ss_pred eccc
Q psy11547 524 YLPE 527 (587)
Q Consensus 524 ~~~~ 527 (587)
++-+
T Consensus 453 ~y~r 456 (462)
T PRK15034 453 VYGR 456 (462)
T ss_pred Hhcc
Confidence 5443
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-31 Score=267.06 Aligned_cols=377 Identities=18% Similarity=0.218 Sum_probs=265.0
Q ss_pred HHHHHHHHHHhhhhhhccccccHHHHHhhhcCCCCCccCcchhHHHHHHHHHHHHHHHHhHHHhhhccchhHHHHHhhHH
Q psy11547 88 SLTLAVFANLGNVNTGMVFGFSAAATSQLISRDSPYRITSDESTWIASLSAIGTMVGCVLGGYMMDLVGRKMTLIITEVP 167 (587)
Q Consensus 88 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~i~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~ 167 (587)
.+.......+..+..+++........|.+.++ +|.+..+.+++.+.+.++..++.++.|+++||+|||+++..+.++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~ 91 (398)
T TIGR00895 15 QWRAIILSFLIMLMDGYDLAAMGFAAPAISAE---WGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILL 91 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhc---cCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHH
Confidence 44555666667777788888888888998885 999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCcchhhHHhhhhhhccccccccccceeeeeccCCCcchhHhHHHHHHHHHHHHHHHHhhhhh--
Q psy11547 168 TILGWALIALAPSLPSSILPWIFTGRILTGLGSGMVGAPSRIYTAECSQPHLRGMLSSLASFGVSLGVLFEYSLGAFL-- 245 (587)
Q Consensus 168 ~~i~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l-- 245 (587)
.+++.++++++++++ .+++.|++.|++.+...+...+++.|++|+++|++++++...+..+|..+++.+++.+
T Consensus 92 ~~~~~~~~~~~~~~~-----~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~ 166 (398)
T TIGR00895 92 FSVFTLLCALATNVT-----QLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIP 166 (398)
T ss_pred HHHHHHHHHHccchH-----HHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhh
Confidence 999999999999988 8999999999999999999999999999999999999999999999999999998877
Q ss_pred --hHHHHHHHHHHHHHHHHHH-hcccCCCchHHHhcCCHHHHHHHHHHHhCCCcchHHHHhhHHHHHHHHHHHhhhhhhH
Q psy11547 246 --SWDTVAAISTIIPVLSIIA-GCLMPESPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQGLYEFSKRQETQKSRNFKE 322 (587)
Q Consensus 246 --~wr~~f~~~~~~~~~~~~~-~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (587)
+||+.|++.+++.++..++ ..++||++++...+ +.++..+..++........... .. .+++.+....+.
T Consensus 167 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~-----~~~~~~~~~~~~ 238 (398)
T TIGR00895 167 VFGWRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSK-RPETVRRIVNAIAPQMQAEAQS--AL-----PEQKATQGTKRS 238 (398)
T ss_pred cccceeehhhhhhHHHHHHHHHHHhCCCCChHHHhc-CHHHHHHHHHHHHHhccccccc--cc-----cccccccchhhH
Confidence 8999999987665555444 44589988765444 3333322222221111000000 00 000001111222
Q ss_pred hHHhhhcCCchHHHHHHHHHHHHHHhccchhhHhcHHHHHHhcCCC-cchHHHHHHHHHHHHHHHHhHHHhhcccCCchh
Q psy11547 323 TLAAIVEPACLKPFVILMLYFLIYQFSGVNPVTFYAVNIFKDAGAH-VNNNLAAVIMGIVRLIFTIASCIMMKKMGRRSL 401 (587)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~~~~ 401 (587)
..+.++++...+.......... ...........+.|.+.++.+.+ ...+.......++.+++.++.+++.||+++|..
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 317 (398)
T TIGR00895 239 VFKALFQGKTARITVLLWLLYF-MLLVGVYFLTNWLPKLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVT 317 (398)
T ss_pred HHHHHhcchhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHH
Confidence 2333333333333222222222 22233445666778777778887 455677778888999999999999999999844
Q ss_pred hHhhhHHHHHHHHHHHHHHHhccCCCCCCCcCccchhHHHHHHHHHHHHHhccccccceeeeeccCCCCchhhHHHHHHH
Q psy11547 402 TFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTC 481 (587)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~ 481 (587)
+. +..+..+...++.. .. ...+......++.+.+.+.. .+..++++.|.+|++.|+++.|+.+.
T Consensus 318 ~~-~~~~~~~~~~~~~~--~~------------~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~g~~~g~~~~ 381 (398)
T TIGR00895 318 AL-LLLLGAVFAVLVGS--TL------------FSPTLLLLLGAIAGFFVNGG-QSGLYALMALFYPTAIRATGVGWAIG 381 (398)
T ss_pred HH-HHHHHHHHHHHHHH--Hh------------hCHHHHHHHHHHHHHHHHHH-HHHHHHHHhhcCCHHHHHHHHHHHHH
Confidence 33 33333333222222 11 12233333333444333333 34556889999999999999999999
Q ss_pred HHHHHHHHHHHhhHHH
Q psy11547 482 ACHFFIFLTVKSYNMF 497 (587)
Q Consensus 482 ~~~~g~~i~~~~~g~l 497 (587)
+..+|.+++|.+.|.+
T Consensus 382 ~~~~g~~~g~~~~G~l 397 (398)
T TIGR00895 382 IGRLGAIIGPILAGYL 397 (398)
T ss_pred HHHHHHHHHHHhHHhc
Confidence 9999999999998865
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.5e-30 Score=260.82 Aligned_cols=370 Identities=14% Similarity=0.026 Sum_probs=262.4
Q ss_pred HHHHHHHHHHhhhhhhccccccHHHHHhhhcCCCCCccCcchhHHHHHHHHHHHHHHHHhHHHhhhccchhHHHHHhhHH
Q psy11547 88 SLTLAVFANLGNVNTGMVFGFSAAATSQLISRDSPYRITSDESTWIASLSAIGTMVGCVLGGYMMDLVGRKMTLIITEVP 167 (587)
Q Consensus 88 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~i~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~ 167 (587)
.++..+.+.+..+...+......+.+|.+.++ +|.+..+.++..+.+.+++.+++++.|+++||+|||++++++.++
T Consensus 11 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~ 87 (406)
T PRK15402 11 ALLFPLCLVLFEFATYIANDMIQPGMLAVVED---FNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAF 87 (406)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHhcchHHHHHH---hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHH
Confidence 67777777888888888888888889988875 999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCcchhhHHhhhhhhccccccccccceeeeeccCCCcchhHhHHHHHHHHHHHHHHHHhhhhh--
Q psy11547 168 TILGWALIALAPSLPSSILPWIFTGRILTGLGSGMVGAPSRIYTAECSQPHLRGMLSSLASFGVSLGVLFEYSLGAFL-- 245 (587)
Q Consensus 168 ~~i~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l-- 245 (587)
.+++.++++++++++ .+++.|+++|++.+...+...+++.|++|+++|++++++......+|..++|.+++.+
T Consensus 88 ~~~~~~~~~~~~~~~-----~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~ 162 (406)
T PRK15402 88 FILTCLAILLAQSIE-----QFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIH 162 (406)
T ss_pred HHHHHHHHHHHccHH-----HHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998 8999999999999988888899999999999999999999888888999999988776
Q ss_pred --hHHHHHHHHHHHHHHHHHHhcc-cCCCchHHHhcCCHHHHHHHHHHHhCCCcchHHHHhhHHHHHHHHHHHhhhhhhH
Q psy11547 246 --SWDTVAAISTIIPVLSIIAGCL-MPESPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQGLYEFSKRQETQKSRNFKE 322 (587)
Q Consensus 246 --~wr~~f~~~~~~~~~~~~~~~~-~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (587)
+||+.|++.+++.++..+..++ +||+++...++.+ .++..+.
T Consensus 163 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------------~~~~~~~ 207 (406)
T PRK15402 163 VLPWRGMFVLFAALAALSFFGLWRAMPETAGRVGEKLS-----------------------------------LKELGRD 207 (406)
T ss_pred ccCccHHHHHHHHHHHHHHHHHHHhCCCCCcccccccc-----------------------------------HHHHHHH
Confidence 8999999988887776665443 7776421000000 0001122
Q ss_pred hHHhhhcCCchHHHHHHHHHHHHHHhccchhhHhcHHHHHH-hcCCC-cchHHHHHHHHHHHHHHHHhHHHhhcccCCch
Q psy11547 323 TLAAIVEPACLKPFVILMLYFLIYQFSGVNPVTFYAVNIFK-DAGAH-VNNNLAAVIMGIVRLIFTIASCIMMKKMGRRS 400 (587)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~-~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~~~ 400 (587)
....++++.++...+....... .......+.|.++. ..+.+ .+.+.......++.+++.++.+++.||+++|+
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~ 282 (406)
T PRK15402 208 YKLVLKNRRFVAGALALGLVSL-----PLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRS 282 (406)
T ss_pred HHHHHcCcHHHHHHHHHHHHHH-----HHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 3344555543322221111111 12223344565554 46676 33445555566678889999999999999999
Q ss_pred hhHhhhHHHHHHHHHHHHHHHhccCCCCCCCcCccchhHHHHHHHHHHHHHhccccccceeeeeccCCCCchhhHHHHHH
Q psy11547 401 LTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTT 480 (587)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~ 480 (587)
.+.++.++..++.+++...... . ....+.......+++.+.+... +........ .+++.+|++.++.+
T Consensus 283 ~~~~~~~~~~~g~~~~~~~~~~-~---------~~~~~~~~~~~~~~g~g~~~~~-~~~~~~~~~-~~~~~~g~~~~~~~ 350 (406)
T PRK15402 283 LIRMGLWPMVAGLLLAALATVI-S---------SHAYLWLTAGLSLYAFGIGLAN-AGLYRLTLF-SSDVSKGTVSAAMG 350 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHc-c---------cccHHHHHHHHHHHHHHHHHHh-hhHHHHHhh-hccccccHHHHHHH
Confidence 8888877777666666553221 0 1122222333333443333332 222233322 34478899999999
Q ss_pred HHHHHHHHHHHHhhHHHHHhhhhhhHHHHHHHHHHHH
Q psy11547 481 CACHFFIFLTVKSYNMFQTHLTKEGTFLMYGCISLLG 517 (587)
Q Consensus 481 ~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~ 517 (587)
....++..+++.+.+.+.+..+.....+..++..++.
T Consensus 351 ~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~ 387 (406)
T PRK15402 351 MLSMLIFTVGIELSKHAYLGGGNGLFNLFNLANGLLW 387 (406)
T ss_pred HHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHHHH
Confidence 9999999999999999988877654444433333333
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-30 Score=269.30 Aligned_cols=393 Identities=14% Similarity=0.125 Sum_probs=263.3
Q ss_pred HHHHHHHHHHhhhhhhccccccHHHHHhhhcC-------------------CCCCccCcchhHHHHHHHHHHHHHHHHhH
Q psy11547 88 SLTLAVFANLGNVNTGMVFGFSAAATSQLISR-------------------DSPYRITSDESTWIASLSAIGTMVGCVLG 148 (587)
Q Consensus 88 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~s~~~~g~i~s~~~l~~~i~~~~~ 148 (587)
++.+..+++++......|+...+...+.+.++ ..+++++..+.|++.+.+.+++.++++++
T Consensus 17 r~~i~~~~~~~~~~~y~dr~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~ 96 (465)
T TIGR00894 17 RLFLSFLLHICNVIIIAQRICLSLTMVAMVNKENSTDLACLSAENELDNIKNPNFKWSGALQGLILSSHFYGQIIIQIPV 96 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHhhheEEEEEcccCCCCCCccccccccccccccCCCCCCCHHHhhHHHHHHHHHHHHHHcch
Confidence 56666777777777777877777777666541 11589999999999999999999999999
Q ss_pred HHhhhccchhHHHHHhhHHHHHHHHHHHhc--CCCCCCcchhhHHhhhhhhccccccccccceeeeeccCCCcchhHhHH
Q psy11547 149 GYMMDLVGRKMTLIITEVPTILGWALIALA--PSLPSSILPWIFTGRILTGLGSGMVGAPSRIYTAECSQPHLRGMLSSL 226 (587)
Q Consensus 149 g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~--~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~ 226 (587)
|+++||+|||+++..+.++++++.+++.++ .+++ .+++.|+++|++.+...+....++.||+|+++|++++++
T Consensus 97 g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~-----~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 171 (465)
T TIGR00894 97 GYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIA-----LVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGM 171 (465)
T ss_pred HHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCch-----HHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHHH
Confidence 999999999999999999999998887554 5677 899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhh-----hHHHHHHHHHHHHHHHHHHhcc-cCCCchHHHhcCCHHHHHHHHHHHhCCCcchHH
Q psy11547 227 ASFGVSLGVLFEYSLGAFL-----SWDTVAAISTIIPVLSIIAGCL-MPESPSWLLSQGRKDACRNSLRRLRANNYDVEK 300 (587)
Q Consensus 227 ~~~~~~~G~~i~~~l~~~l-----~wr~~f~~~~~~~~~~~~~~~~-~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (587)
...+..+|.++++++++.+ +||+.|++.++++++..++.++ .+|+|+... +.+.++. +.+++.
T Consensus 172 ~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~~~~-~~~~~~~-~~i~~~--------- 240 (465)
T TIGR00894 172 STSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADDPSIHP-CISKFEK-KYINSS--------- 240 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCCcccCC-CCCHHHH-HHHHhh---------
Confidence 9999999999999998876 7999999999988777666555 666664211 1111111 101000
Q ss_pred HHhhHHHHHHHHHHHhhhhhhHhHHhhhcCCchHHHHHHHHHHHHHHhccchhhHhcHHHHHHh-cCCC-cchHHHHHHH
Q psy11547 301 EVQGLYEFSKRQETQKSRNFKETLAAIVEPACLKPFVILMLYFLIYQFSGVNPVTFYAVNIFKD-AGAH-VNNNLAAVIM 378 (587)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~-~~~~~~~~~~ 378 (587)
.+. +.++......+.+.++++.. +......+......+.+..|.|.++++ .|++ ...+....+.
T Consensus 241 --------~~~-~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~ 306 (465)
T TIGR00894 241 --------LQG-QKGSTRQSLPIKAIPKSLPV-----WAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLP 306 (465)
T ss_pred --------ccc-ccCCCCCCCCHHHHhcCHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHH
Confidence 000 00001111234444444432 222222333333455667788888765 6777 4556777788
Q ss_pred HHHHHHHHHhHHHhhcccCCchhhH---hhhHHHHHHH---HHHHHHHHhccCCCCCCCcCccchhHHHHHHHHHHHHHh
Q psy11547 379 GIVRLIFTIASCIMMKKMGRRSLTF---ISSIGCGVSM---TGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAAST 452 (587)
Q Consensus 379 ~~~~~i~~~~~g~l~d~~g~~~~~~---~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (587)
.++.+++.++.|+++||+++|+... ...+...++. .+..+.... . ....+..+..+ .+.++..
T Consensus 307 ~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---------~~~~~~~~~~~-~l~~~~~ 375 (465)
T TIGR00894 307 YLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPY-L---------SAAFYLTIIIL-TLANAVS 375 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH-c---------CCchHHHHHHH-HHHHHHh
Confidence 8899999999999999876443211 0011111111 111111111 0 01122222222 2222222
Q ss_pred ccccccceeeeeccCCCCchhhHHHHHHHHHHHHHHHHHHhhHHHHHhh---hhhhHHHHHHHHHHHHHHHhh
Q psy11547 453 IGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHL---TKEGTFLMYGCISLLGTIFFY 522 (587)
Q Consensus 453 ~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~~---g~~~~~~~~~~~~~~~~~~~~ 522 (587)
....+..+....|..|. .+|.+.|+.++.+.++++++|.+.|.+.+.. +|...|.+.+++.+++.++..
T Consensus 376 ~~~~~~~~~~~~~~~~~-~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~ 447 (465)
T TIGR00894 376 SGPLAGVLINSLDLAPR-FLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYL 447 (465)
T ss_pred hhhhhhhhhchhhcChh-HHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHee
Confidence 22223333455566665 7899999999999999999999999887653 367788888777777766543
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-29 Score=254.34 Aligned_cols=353 Identities=10% Similarity=0.037 Sum_probs=253.6
Q ss_pred HHHHhhhhhhccccccHHHHHhhhcCCCCCccCcchhHHHHHHHHHHHHHHHHhHHHhhhccchhHHHHHhhHHHHHHHH
Q psy11547 94 FANLGNVNTGMVFGFSAAATSQLISRDSPYRITSDESTWIASLSAIGTMVGCVLGGYMMDLVGRKMTLIITEVPTILGWA 173 (587)
Q Consensus 94 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~i~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~ 173 (587)
.+.++.+..+...+...+.+|.+.++ +|.|..+.|++.+.+.++..+++++.|+++||+|||+++..+.++.+++.+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~lp~~~~~---~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~ 86 (381)
T PRK03633 10 LLLCGLLLLTLAIAVLNTLVPLWLAQ---EHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCA 86 (381)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHH---cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666788888889999999985 899999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCCcchhhHHhhhhhhccccccccccceeeeeccCCCcchhHhHHHHHHHHHHHHHHHHhhhhh---hHHHH
Q psy11547 174 LIALAPSLPSSILPWIFTGRILTGLGSGMVGAPSRIYTAECSQPHLRGMLSSLASFGVSLGVLFEYSLGAFL---SWDTV 250 (587)
Q Consensus 174 ~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l---~wr~~ 250 (587)
+++++++++ .++++|+++|++.+...+...+.+.+..++++|+++++++..+.++|..+|+.+++.+ .++..
T Consensus 87 ~~~~~~~~~-----~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~ 161 (381)
T PRK03633 87 GLGLMVGFW-----SWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTELMSVL 161 (381)
T ss_pred HHHHhccHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchH
Confidence 999999998 9999999999999988888888888888999999999999999999999999999887 12222
Q ss_pred HHHHHHHHHHHHHHhc-ccCCCchHHHhcCCHHHHHHHHHHHhCCCcchHHHHhhHHHHHHHHHHHhhhhhhHhHHhhhc
Q psy11547 251 AAISTIIPVLSIIAGC-LMPESPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQGLYEFSKRQETQKSRNFKETLAAIVE 329 (587)
Q Consensus 251 f~~~~~~~~~~~~~~~-~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (587)
++..+......+.+.+ ..++++. + + ++.++..+.+++
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~------~-----------------------------------~-~~~~~~~~~~~~ 199 (381)
T PRK03633 162 PWVTGLVLAAILPLLFTRILNQQA------E-----------------------------------N-HDSTSIWPMLKL 199 (381)
T ss_pred HHHHHHHHHHHHHHHHhcccCCCC------C-----------------------------------C-CCCCCHHHHHHh
Confidence 3332222222221111 1222110 0 0 001122334455
Q ss_pred CCchHHHHHHHHHHHHHHhccchhhHhcHHHHHHhcCCC-cchHHHHHHHHHHHHHHHHhHHHhhcccCCchhhHhhhHH
Q psy11547 330 PACLKPFVILMLYFLIYQFSGVNPVTFYAVNIFKDAGAH-VNNNLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIG 408 (587)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~~~~~~~~~~~ 408 (587)
+..+......+. . .........+.|.+.++.|.+ ...+.......+..+++++..+++.||+++|+.+..+..+
T Consensus 200 ~~~~~~~~~~~~-~----~~~~~~~~~~lp~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~ 274 (381)
T PRK03633 200 RQARLGVNGCII-S----GIVLGSLYGLMPLYLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFV 274 (381)
T ss_pred cchHHHHHHHHH-H----HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHH
Confidence 543321111111 1 111233445678888877777 4455667777788999999999999999999988877776
Q ss_pred HHHHHHHHHHHHHhccCCCCCCCcCccchhHHHHHHHHHHHHHhccccccceeeeeccCCCCchhhHHHHHHHHHHHHHH
Q psy11547 409 CGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIF 488 (587)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~ 488 (587)
..++.+.+.. . ........+++.+ .....|...+.+.|..|++.++...+..+...++|.+
T Consensus 275 ~~~~~~~~~~---~---------------~~~~~~~~l~g~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~ 335 (381)
T PRK03633 275 VILGSIAMLS---Q---------------AAMAPALFILGAA-GFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSL 335 (381)
T ss_pred HHHHHHHHhh---h---------------HHHHHHHHHHHHH-HHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHH
Confidence 6665543321 1 1111122222222 2233455557778888888878888888888899999
Q ss_pred HHHHhhHHHHHhhhhhhHHHHHHHHHHHHHHH
Q psy11547 489 LTVKSYNMFQTHLTKEGTFLMYGCISLLGTIF 520 (587)
Q Consensus 489 i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~ 520 (587)
++|.+.|.+.|+.|+...|.+.+.+.++..+.
T Consensus 336 igp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~ 367 (381)
T PRK03633 336 LGPSFTAMLMQNYSDNLLFIMIASVSFIYLLM 367 (381)
T ss_pred HHHHHHHHHHHHhCccHHHHHHHHHHHHHHHH
Confidence 99999999999999988888877777655543
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-29 Score=257.17 Aligned_cols=362 Identities=14% Similarity=0.152 Sum_probs=255.7
Q ss_pred HhhhhhhccccccHHHHHhhhcCCCCCccCcch-----hHHHHHHHHHHHHHHHHhHHHhhhccchhHHHHHhhHHHHHH
Q psy11547 97 LGNVNTGMVFGFSAAATSQLISRDSPYRITSDE-----STWIASLSAIGTMVGCVLGGYMMDLVGRKMTLIITEVPTILG 171 (587)
Q Consensus 97 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-----~g~i~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~ 171 (587)
++.++.++......+.+|.+.++ +|.+..+ .|++.+++.++..++++++|+++||+|||++++.+.++.+++
T Consensus 21 ~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~ 97 (408)
T PRK09874 21 LGCFLTGAAFSLVMPFLPLYVEQ---LGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIV 97 (408)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHH---hCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHH
Confidence 34455566666777888888875 8887654 489999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCcchhhHHhhhhhhccccccccccceeeeeccCCCcchhHhHHHHHHHHHHHHHHHHhhhhh----hH
Q psy11547 172 WALIALAPSLPSSILPWIFTGRILTGLGSGMVGAPSRIYTAECSQPHLRGMLSSLASFGVSLGVLFEYSLGAFL----SW 247 (587)
Q Consensus 172 ~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l----~w 247 (587)
.++++++++++ .+++.|++.|++.+ ..+....++.+++|+++|++++++...+..+|.++++.+++.+ +|
T Consensus 98 ~~~~~~~~~~~-----~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 171 (408)
T PRK09874 98 MVLMGLAQNIW-----QFLILRALLGLLGG-FVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSYGL 171 (408)
T ss_pred HHHHHHHhhHH-----HHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCH
Confidence 99999999988 99999999999765 5577778889999999999999999999999999999999877 89
Q ss_pred HHHHHHHHHHHHHHHHHhcc-cCCCchHHHhcCCHHHHHHHHHHHhCCCcchHHHHhhHHHHHHHHHHHhhhhhhHhHHh
Q psy11547 248 DTVAAISTIIPVLSIIAGCL-MPESPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQGLYEFSKRQETQKSRNFKETLAA 326 (587)
Q Consensus 248 r~~f~~~~~~~~~~~~~~~~-~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (587)
|+.|++.+++.++..+..++ +||+++.. ++.+ ..+.++..+.
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~----------------------------------~~~~~~~~~~ 214 (408)
T PRK09874 172 RPVFFITASVLFLCFLVTLFCIRENFQPV---SKKE----------------------------------MLHMREVVTS 214 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCcccc---cchh----------------------------------hhHHHHHHHh
Confidence 99999988887766655444 66643110 0000 0001112233
Q ss_pred hhcCCchHHHHHHHHHHHHHHhccchhhHhcHHHHHHhcCCC-cc----hHHHHHHHHHHHHHHHHhHHHhhcccCCchh
Q psy11547 327 IVEPACLKPFVILMLYFLIYQFSGVNPVTFYAVNIFKDAGAH-VN----NNLAAVIMGIVRLIFTIASCIMMKKMGRRSL 401 (587)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~----~~~~~~~~~~~~~i~~~~~g~l~d~~g~~~~ 401 (587)
++++..+........... . .......+.+.+..+.+.+ .+ .+....+.+++.+++.+..+++.||++||+.
T Consensus 215 ~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~ 290 (408)
T PRK09874 215 LKNPKLVLSLFVTTLIIQ---V-ATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKI 290 (408)
T ss_pred CcCCchHHHHHHHHHHHH---H-HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchh
Confidence 444443332222111111 1 1122333344444443222 11 1233445567778888899999999999998
Q ss_pred hHhhhHHHHHHHHHHHHHHHhccCCCCCCCcCccchhHHHHHHHHHHHHHhccccccceeeeeccCCCCchhhHHHHHHH
Q psy11547 402 TFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTC 481 (587)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~ 481 (587)
+..+..+..++.+.+.. ....+...+...+.+.+.+ ...+...+++.+..|++.+++..++.+.
T Consensus 291 ~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 354 (408)
T PRK09874 291 LITALIFSVLLLIPMSF---------------VQTPLQLGILRFLLGAADG-ALLPAVQTLLVYNSSNQIAGRIFSYNQS 354 (408)
T ss_pred HHHHHHHHHHHHHHHHH---------------hccHHHHHHHHHHHHhhhH-hhHHHHHHHHHHhCCcccceeeehHHHH
Confidence 88877766655544433 1122333333333333333 2334444666788899999999999999
Q ss_pred HHHHHHHHHHHhhHHHHHhhhhhhHHHHHHHHHHHHHHHhhee
Q psy11547 482 ACHFFIFLTVKSYNMFQTHLTKEGTFLMYGCISLLGTIFFYVY 524 (587)
Q Consensus 482 ~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 524 (587)
...+|..++|.+.|.+.+..|+...|++.+++.+++.++.++.
T Consensus 355 ~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~ 397 (408)
T PRK09874 355 FRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWNS 397 (408)
T ss_pred HHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998888888877765543
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-30 Score=269.74 Aligned_cols=384 Identities=14% Similarity=0.127 Sum_probs=271.4
Q ss_pred HHHHHHHhhhhhhccccccHHHHHhhhcCCCCCccCcchhHHHHHHHHHHHHHHHHhHHHhhhccchhHHHHHhhHHHHH
Q psy11547 91 LAVFANLGNVNTGMVFGFSAAATSQLISRDSPYRITSDESTWIASLSAIGTMVGCVLGGYMMDLVGRKMTLIITEVPTIL 170 (587)
Q Consensus 91 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~i~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i 170 (587)
+...++++.+...++.....+.+|.+.++ +|.+..+.+++.+.+.++..++.++.|+++||+|||++++++.++.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~---~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~ 79 (485)
T TIGR00711 3 LTIVLMLGTFMAVLDSTIVNVAIPTIAGD---LGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTL 79 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHH
Confidence 34556677888889999999999999985 999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCCcchhhHHhhhhhhccccccccccceeeeeccCCCcchhHhHHHHHHHHHHHHHHHHhhhhh----h
Q psy11547 171 GWALIALAPSLPSSILPWIFTGRILTGLGSGMVGAPSRIYTAECSQPHLRGMLSSLASFGVSLGVLFEYSLGAFL----S 246 (587)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l----~ 246 (587)
++++++++++++ .++++|+++|++.+...+...+++.|++|+++|+++++++..+..+|..+++.+++++ +
T Consensus 80 ~~~~~~~~~~~~-----~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~ 154 (485)
T TIGR00711 80 GSLLCGVAPNLE-----LMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYH 154 (485)
T ss_pred HHHHHhCcCCHH-----HHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcC
Confidence 999999999999 9999999999999999999999999999999999999999999999999999999887 9
Q ss_pred HHHHHHHHHHHHHHHHHHhcc-cCCCchHHHhcCCHHHHHHHH--------H-HH-hCCC--cchHHHHhhHH-----H-
Q psy11547 247 WDTVAAISTIIPVLSIIAGCL-MPESPSWLLSQGRKDACRNSL--------R-RL-RANN--YDVEKEVQGLY-----E- 307 (587)
Q Consensus 247 wr~~f~~~~~~~~~~~~~~~~-~~esp~~~~~~~~~~~~~~~~--------~-~~-~~~~--~~~~~~~~~~~-----~- 307 (587)
||+.|++.++++++..++.++ +||+++. .+++.+.....+ . .. .... ...+....... .
T Consensus 155 w~~~f~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~d~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (485)
T TIGR00711 155 WRWIFLINVPIGIIVVVVAFFILPRDKPA--ASENFDFLGLLLLSVGLGSLLYGLSEGPERGWFDSNEILILSITGLVAI 232 (485)
T ss_pred ceehhhhhhHHHHHHHHHHHHHcCCcccc--ccCCCcHHHHHHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHH
Confidence 999999988887776655544 6665421 111111111000 0 00 0000 00010000000 0
Q ss_pred HHHHHHHHhhhhhhHhHHhhhcCCchHHHHHHHHHHHHHHhccchhhHhcHHHHHHh-cCCC-cchHHHHHHHHHHHHHH
Q psy11547 308 FSKRQETQKSRNFKETLAAIVEPACLKPFVILMLYFLIYQFSGVNPVTFYAVNIFKD-AGAH-VNNNLAAVIMGIVRLIF 385 (587)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~-~~~~~~~~~~~~~~~i~ 385 (587)
......+.+..++....+.++++.++...+..+.... ......++.|.++++ .|++ .+.+.......++.+++
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~ 307 (485)
T TIGR00711 233 IAFVVWELTDDNPLVDLRLFKYRNFTIGCVYMSLLGL-----GLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLS 307 (485)
T ss_pred HHHHHHHHcCCCCccCHHHHcCCChHHHHHHHHHHHH-----HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 0000000011111122345666655443322222222 233455677777765 6777 45667777788899999
Q ss_pred HHhHHHhhcccCCchhhHhhhHHHHHHHHHHHHHHHhccCCCCCCCcCccchhHHHHHHHHHHHHHhccccccceeeeec
Q psy11547 386 TIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGE 465 (587)
Q Consensus 386 ~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (587)
.++.|++.||++||+.+.++..+.+++..++...... ....+.......+.+.+.+....+.. ....+
T Consensus 308 ~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~l~g~g~~~~~~~~~-~~~~~ 375 (485)
T TIGR00711 308 SPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFTP-----------DTPFLAIALPQFIRGFGMGCFFMPLT-TIALS 375 (485)
T ss_pred HHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccCCC-----------CCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHh
Confidence 9999999999999999888877777766655421111 11222333333344444433333433 55567
Q ss_pred cCCCCchhhHHHHHHHHHHHHHHHHHHhhHHHHHhh
Q psy11547 466 VYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHL 501 (587)
Q Consensus 466 ~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~~ 501 (587)
..|++.++++.|+.++...+|+.+++.+.+.+.++.
T Consensus 376 ~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~~~ 411 (485)
T TIGR00711 376 GLPPHKIARGSSLSNFTRQLGGSIGTALITTILTNR 411 (485)
T ss_pred cCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999999999999999988753
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >KOG1330|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.6e-31 Score=251.32 Aligned_cols=363 Identities=14% Similarity=0.097 Sum_probs=257.8
Q ss_pred HHHHHHHHHHhhhhhhccccccHHHHHhhhcCCCCCccCcchhHHHHHHHHHHHHHHHHhHHHhhhccchhHHHHHhhHH
Q psy11547 88 SLTLAVFANLGNVNTGMVFGFSAAATSQLISRDSPYRITSDESTWIASLSAIGTMVGCVLGGYMMDLVGRKMTLIITEVP 167 (587)
Q Consensus 88 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~i~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~ 167 (587)
.++.++++++.+.+...|...+..+++.++.. +|++++..|++.+.+.+.+.+++|++|+++|||.||+++.+|..+
T Consensus 31 ~~~~l~il~~vnlmny~Dr~~iagv~~~v~~~---fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~i 107 (493)
T KOG1330|consen 31 PTLTLVILCLVNLMNYADRYTIAGVLKEVQTY---FNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFI 107 (493)
T ss_pred chHHHHHHHHHHHHHHhhhhhhhhhhHHHHHh---cCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHH
Confidence 45567778888999999999999999999885 999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCcchhhHHhhhhhhccccccccccceeeeeccCCCcchhHhHHHHHHHHHHHHHHHHhhhhh--
Q psy11547 168 TILGWALIALAPSLPSSILPWIFTGRILTGLGSGMVGAPSRIYTAECSQPHLRGMLSSLASFGVSLGVLFEYSLGAFL-- 245 (587)
Q Consensus 168 ~~i~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l-- 245 (587)
|.++.++++++..|| +++++|.+.|+|.+...|+++++++|.+|..+|++++++++.+..+|..+|.+.+..+
T Consensus 108 W~~Av~~~~fs~~Fw-----q~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~ 182 (493)
T KOG1330|consen 108 WTLAVFASGFSNHFW-----QVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVAS 182 (493)
T ss_pred HHHHHHHHHHHHHHH-----HHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeecc
Confidence 999999999998888 9999999999999999999999999999999999999999999999999999998887
Q ss_pred ---hHHHHHHHHHHHHHHHHHHhcc-cCCCchHHHhcCCHHHHHHHHHHHhCCCcchHHHHhhHHHHHHHHHHHhhhhhh
Q psy11547 246 ---SWDTVAAISTIIPVLSIIAGCL-MPESPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQGLYEFSKRQETQKSRNFK 321 (587)
Q Consensus 246 ---~wr~~f~~~~~~~~~~~~~~~~-~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (587)
.|||.|++.+++++++.++.++ ++|+++- ..++... ++ +.........+
T Consensus 183 ~~~~Wr~af~~~avl~vi~~~L~~~f~~eP~rg-----a~~~~~~-------~~---------------~~~~~~ts~~k 235 (493)
T KOG1330|consen 183 LTFWWRWAFRGSAVLGVIVGLLVFLFVREPERG-----ARDEVDG-------EN---------------KMVKPFTSVWK 235 (493)
T ss_pred CccceEEEEEeehHHHHHHHHHHHhhccCcccc-----ccccccc-------CC---------------cCCCCccchHH
Confidence 5999999999999988877765 7776521 1111000 00 00001222344
Q ss_pred HhHHhhhcCCchHHHHHHHHHHHHHHhccchhhHhcHHHH----HHhcCCC-cchHHHHHHHHHHHHHHHHhHHHhhccc
Q psy11547 322 ETLAAIVEPACLKPFVILMLYFLIYQFSGVNPVTFYAVNI----FKDAGAH-VNNNLAAVIMGIVRLIFTIASCIMMKKM 396 (587)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~g~~-~~~~~~~~~~~~~~~i~~~~~g~l~d~~ 396 (587)
+.+...+.+.+....+-.....+. ...+.++.|.+ .+-.+++ ....+...+...++.+|.+++|.++||+
T Consensus 236 Dl~~l~~~~v~v~~sl~~~a~~fv-----~Gs~sww~p~~~~~~~~~~~~~~~~~~ifg~vt~~~G~lGvl~Ggiisd~~ 310 (493)
T KOG1330|consen 236 DLKVLAKIKVFVLSSLGIIAAQFV-----IGSLSWWAPAFIYYSYELIGFDHNATLIFGGVTCAGGSLGVLFGGIISDKL 310 (493)
T ss_pred HHHHHHccCceeeehHHHHHHHHh-----ccccchhhhhHHHHHHHHhCCccccchhhhhHHHhhchhhheehHHHHHHH
Confidence 555555555554444444433332 22334444433 3334555 4456777788888999999999999994
Q ss_pred C----CchhhHhhhHHHHHHH----HHHHHHHHhccCCCCCCCcCccchhHHHHHHHHHHHHHhccccccceeeeeccCC
Q psy11547 397 G----RRSLTFISSIGCGVSM----TGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYP 468 (587)
Q Consensus 397 g----~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 468 (587)
. +-.......+..+.+. ..+...... ........+.+++++............-+..|+.|
T Consensus 311 ~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~~~~~-----------~~~s~~~~~il~~~g~~~~~~~~a~n~~i~l~vV~ 379 (493)
T KOG1330|consen 311 SRIFPNSGTLRASQLSAALGAPLSIPFLFLFPAF-----------TSSSMIFGLILFLVGETISWFNWATNNPIFLEVVP 379 (493)
T ss_pred HHhcccccchhHHHHHHhhhhhHHHHHHHHHHhh-----------hhHHHHHHHHHHHHHHHHHhcccccccceeeEecC
Confidence 3 2122222222222111 111111111 11223333333333333333333344477889999
Q ss_pred CCchhhHHHHHHHHHHHHH-HHHHHhhHHHHHhh
Q psy11547 469 TKVRGIVGGLTTCACHFFI-FLTVKSYNMFQTHL 501 (587)
Q Consensus 469 ~~~r~~~~g~~~~~~~~g~-~i~~~~~g~l~~~~ 501 (587)
++.|.++.++...+..+.+ +-+|.+.|.+.|+.
T Consensus 380 p~~Rt~a~a~~~~~~h~fgd~~~p~ivGilsd~l 413 (493)
T KOG1330|consen 380 PSRRTTAYALDTVFEHIFGDAASPYIVGILSDKL 413 (493)
T ss_pred cccccHHHHHHHHHHHHhccCCCcceehhHHHHh
Confidence 9999999999988776544 44555999998874
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-30 Score=261.91 Aligned_cols=368 Identities=14% Similarity=0.078 Sum_probs=248.0
Q ss_pred hhhhhccccccHHHHHhhhcCCCCCccCcchhHHHHHHHHHHHHHHHHhHHHhhhccchhHHHHHhhHHHHHHHHHHHhc
Q psy11547 99 NVNTGMVFGFSAAATSQLISRDSPYRITSDESTWIASLSAIGTMVGCVLGGYMMDLVGRKMTLIITEVPTILGWALIALA 178 (587)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~i~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~ 178 (587)
++...++....+...|.+.++ +|.+..+.|++.+++.++..+++++.|+++||+|||++++++.++.+++.++++++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~---~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~ 80 (379)
T TIGR00881 4 YAAYYLVRKNFALAMPYLVEE---IGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFS 80 (379)
T ss_pred hhHHHHhHHhhhhhhHHHHHH---hCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHh
Confidence 445566777778888988875 99999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcchhhHHhhhhhhccccccccccceeeeeccCCCcchhHhHHHHHHHHHHHHHHH-Hhhhhh----hHHHHHHH
Q psy11547 179 PSLPSSILPWIFTGRILTGLGSGMVGAPSRIYTAECSQPHLRGMLSSLASFGVSLGVLFEY-SLGAFL----SWDTVAAI 253 (587)
Q Consensus 179 ~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~-~l~~~l----~wr~~f~~ 253 (587)
++++ .+++.|++.|++.+...+...+++.|++|+++|++++++...+..+|.++++ .++..+ +||+.|++
T Consensus 81 ~~~~-----~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 155 (379)
T TIGR00881 81 TSLW-----VMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIV 155 (379)
T ss_pred hhHH-----HHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHH
Confidence 9998 9999999999999999999999999999999999999999999999999999 455544 89999999
Q ss_pred HHHHHHHHHHHhc-ccCCCchHHHhcCCHHHHHHHHHHHhCCCcchHHHHhhHHHHHHHHHHHhhhhhhHhHHhhhcCCc
Q psy11547 254 STIIPVLSIIAGC-LMPESPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQGLYEFSKRQETQKSRNFKETLAAIVEPAC 332 (587)
Q Consensus 254 ~~~~~~~~~~~~~-~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (587)
.+++.++..++.+ +.+|+|+....+...++.. ...+.+ .++.+++.+.........++++..
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~ 218 (379)
T TIGR00881 156 PGIIAIIVSLICFLLLRDSPQSCGLPPAEEMPN--------EEPDGD---------AEKKEEELTKKQIFLQYVLLNKVL 218 (379)
T ss_pred HHHHHHHHHHHHheeeCCCccccccCccccCcc--------cccccc---------cccccccccchHHHHHHHHhcchH
Confidence 8887776554444 4777653211100000000 000000 000000001111223334445443
Q ss_pred hHHHHHHHHHHHHHHhccchhhHhcHHHHHHh-cCCC-cchHHHHHHHHHHHHHHHHhHHHhhcccCCchhhHhhhHHHH
Q psy11547 333 LKPFVILMLYFLIYQFSGVNPVTFYAVNIFKD-AGAH-VNNNLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCG 410 (587)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~-~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~~~~~~~~~~~~~ 410 (587)
+...+.... ..........+.|.++.+ .|.+ .+.+.......++.+++.++.+++.||..+++..........
T Consensus 219 ~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~ 293 (379)
T TIGR00881 219 WYISLGYVF-----VYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMA 293 (379)
T ss_pred HHHHHHHHH-----HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHH
Confidence 322221111 111233455566776654 5777 455677778888999999999999998643322222222111
Q ss_pred HHHHHHHHHHHhccCCCCCCCcCccchhHHHHHHHHHHHHHhccccccceeeeeccCCCCchhhHHHHHHHHHHHHHHHH
Q psy11547 411 VSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLT 490 (587)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~ 490 (587)
...+.+...... . ....+.........+ ....+..+....+..|.+|++.|+++.|+.+....+|..++
T Consensus 294 ~~~~~~~~~~~~--~--------~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~ 362 (379)
T TIGR00881 294 LIIVSLLVYWLN--P--------AANPLMDLICLFALG-FLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILA 362 (379)
T ss_pred HHHHHHHHHhcC--c--------chhHHHHHHHHHHHH-HHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhh
Confidence 111111111110 0 011122222222222 22223333334678899999999999999999999999999
Q ss_pred HHhhHHHHHhhhhhhHH
Q psy11547 491 VKSYNMFQTHLTKEGTF 507 (587)
Q Consensus 491 ~~~~g~l~~~~g~~~~~ 507 (587)
|.+.|.+.|..||+..|
T Consensus 363 ~~~~g~l~~~~g~~~~f 379 (379)
T TIGR00881 363 GLPLGYLADGFGWAGAF 379 (379)
T ss_pred hhhHHHHHHhhcccccC
Confidence 99999999998887543
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=4e-29 Score=251.91 Aligned_cols=341 Identities=16% Similarity=0.126 Sum_probs=244.8
Q ss_pred hhhhccccccHHHHHhhhcCCCCCccCcchhHHHHHHHHHHHHHHHHhHHHhhhccchhHHHHHhhHHHHHHHHHHHhcC
Q psy11547 100 VNTGMVFGFSAAATSQLISRDSPYRITSDESTWIASLSAIGTMVGCVLGGYMMDLVGRKMTLIITEVPTILGWALIALAP 179 (587)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~i~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~ 179 (587)
+..........+.+|.+.++ +|.+..+.+++.+++.++..++++++|+++||+|||+++..+.++.+++.+++++++
T Consensus 15 ~~~~~~~~~~~~~~p~~~~~---~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~ 91 (385)
T TIGR00710 15 ILGPLGIDMYLPAFPEIAAD---LSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSN 91 (385)
T ss_pred HHHHHHHHHhcccHHHHHHH---hCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHc
Confidence 34455666667888888885 999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcchhhHHhhhhhhccccccccccceeeeeccCCCcchhHhHHHHHHHHHHHHHHHHhhhhh----hHHHHHHHHH
Q psy11547 180 SLPSSILPWIFTGRILTGLGSGMVGAPSRIYTAECSQPHLRGMLSSLASFGVSLGVLFEYSLGAFL----SWDTVAAIST 255 (587)
Q Consensus 180 ~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l----~wr~~f~~~~ 255 (587)
+++ .+++.|++.|++.+...+...+++.|++|+++|++++++.+....+|..+++.+++.+ +||+.|++.+
T Consensus 92 ~~~-----~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~ 166 (385)
T TIGR00710 92 NIE-----TLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLS 166 (385)
T ss_pred cHH-----HHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 998 9999999999999999999999999999999999999999999999999999999877 8999999988
Q ss_pred HHHHHHHHHhcc-cCCCchHHHhcCCHHHHHHHHHHHhCCCcchHHHHhhHHHHHHHHHHHhhhhhhHhHHhhhcCCchH
Q psy11547 256 IIPVLSIIAGCL-MPESPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQGLYEFSKRQETQKSRNFKETLAAIVEPACLK 334 (587)
Q Consensus 256 ~~~~~~~~~~~~-~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (587)
++.++..+..++ .||+++.. ++ ++ .+...+...+.++++..+.
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~---~~-~~--------------------------------~~~~~~~~~~~~~~~~~~~ 210 (385)
T TIGR00710 167 LAGILLSALIFFILPETLPYE---AR-IQ--------------------------------ISTYFETFLLLLKSKMFWG 210 (385)
T ss_pred HHHHHHHHHHHHhCCCCCCCc---cc-CC--------------------------------HHHHHHHHHHHHcCchhHH
Confidence 887776655544 67654210 00 00 0001122334455554433
Q ss_pred HHHHHHHHHHHHHhccchhhHhcHHHHHH-hcCCC-cchHHHHHHHHHHHHHHHHhHHHhhcccCCchhhHhhhHHHHHH
Q psy11547 335 PFVILMLYFLIYQFSGVNPVTFYAVNIFK-DAGAH-VNNNLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVS 412 (587)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~-~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~~~~~~~~~~~~~~~ 412 (587)
..+...... ........+.|.+++ +.+.+ ...+.......++.+++.++.+++.||+++|+.+..+..+..++
T Consensus 211 ~~~~~~~~~-----~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~ 285 (385)
T TIGR00710 211 YALIYGASF-----GGFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVS 285 (385)
T ss_pred HHHHHHHHH-----HHHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 222211111 123334555566655 56776 44566677788889999999999999999999888877776666
Q ss_pred HHHHHHHHHhccCCCCCCCcCccchhHHHH-HHHHHHHHHhccccccceeeeeccCCCCchhhHHHHHHHHHHHHHHHHH
Q psy11547 413 MTGLGLYIFATKDFWPEYKFPAFVSYLPVL-MLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTV 491 (587)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~~ 491 (587)
.+++...... ....+.... ...+.+.+... ..+.......|..| +.++++.++.+.....++.+.+
T Consensus 286 ~~~~~~~~~~-----------~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~ 352 (385)
T TIGR00710 286 AVLLEITAIL-----------GLGSWAMIIGPMMFVGIGNSM-ISSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVG 352 (385)
T ss_pred HHHHHHHHHh-----------ccchHHHHHHHHHHHHHHHHH-HHHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHH
Confidence 6555442222 111222222 22223232332 23344466677777 5689999999988887666766
Q ss_pred HhhHHHHHhhh
Q psy11547 492 KSYNMFQTHLT 502 (587)
Q Consensus 492 ~~~g~l~~~~g 502 (587)
.+.+.+.+..+
T Consensus 353 ~~~~~~~~~~~ 363 (385)
T TIGR00710 353 YLVSLIHGNTA 363 (385)
T ss_pred HHHHhccccCh
Confidence 66674444333
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.6e-29 Score=259.68 Aligned_cols=383 Identities=14% Similarity=0.125 Sum_probs=263.9
Q ss_pred HHHHHhhhhhhccccccHHHHHhhhcCCCCCccCcchhHHHHHHHHHHHHHHHHhHHHhhhccchhHHHHHhhHHHHHHH
Q psy11547 93 VFANLGNVNTGMVFGFSAAATSQLISRDSPYRITSDESTWIASLSAIGTMVGCVLGGYMMDLVGRKMTLIITEVPTILGW 172 (587)
Q Consensus 93 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~i~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~ 172 (587)
..++++.++..++.....+.+|.+.++ +|.+..+.+++.+.+.++..++.+++|+++||+|||++++.+.++.+++.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~p~~~~~---~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~ 89 (471)
T PRK10504 13 WIVAFGFFMQSLDTTIVNTALPSMAQS---LGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGS 89 (471)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHH---hCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHH
Confidence 344556677788888888899999885 99999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCCcchhhHHhhhhhhccccccccccceeeeeccCCCcchhHhHHHHHHHHHHHHHHHHhhhhh----hHH
Q psy11547 173 ALIALAPSLPSSILPWIFTGRILTGLGSGMVGAPSRIYTAECSQPHLRGMLSSLASFGVSLGVLFEYSLGAFL----SWD 248 (587)
Q Consensus 173 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l----~wr 248 (587)
++++++++++ .++++|+++|++.+...+...+++.|++|+++|+++.++.....++|..++|.+++.+ +||
T Consensus 90 ~~~~~~~~~~-----~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~ 164 (471)
T PRK10504 90 LFCALSGTLN-----ELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWH 164 (471)
T ss_pred HHHHHhCCHH-----HHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHH
Confidence 9999999888 8999999999999999999999999999999999999999999999999999999887 999
Q ss_pred HHHHHHHHHHHHHHHHhcc-cCCCchHHHhcCCHHHHHHHHH-------H--HhCCCc-c-hHHHHhhH-----HHH-HH
Q psy11547 249 TVAAISTIIPVLSIIAGCL-MPESPSWLLSQGRKDACRNSLR-------R--LRANNY-D-VEKEVQGL-----YEF-SK 310 (587)
Q Consensus 249 ~~f~~~~~~~~~~~~~~~~-~~esp~~~~~~~~~~~~~~~~~-------~--~~~~~~-~-~~~~~~~~-----~~~-~~ 310 (587)
+.|++..+..++..++... .|+.+.. +.+.+....... . ...... . ........ ... ..
T Consensus 165 ~~f~~~~~~~~l~~~~~~~~~~~~~~~---~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (471)
T PRK10504 165 WIFLINIPVGIIGAIATLMLMPNYTMQ---TRRFDLSGFLLLAVGMATLTLALDGSKGLGLSPLAIAGLVAVGVVALLLY 241 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCcccc---CCCCChHHHHHHHHHHHHHHHHHhcCCcCCcchHHHHHHHHHHHHHHHHH
Confidence 9999988777666555544 5544311 111111111000 0 000000 0 00000000 000 00
Q ss_pred HHHHHhhhhhhHhHHhhhcCCchHHHHHHHHHHHHHHhccchhhHhcHHHHHHh-cCCC-cchHHHHHHHHHHHHHHHHh
Q psy11547 311 RQETQKSRNFKETLAAIVEPACLKPFVILMLYFLIYQFSGVNPVTFYAVNIFKD-AGAH-VNNNLAAVIMGIVRLIFTIA 388 (587)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~-~~~~~~~~~~~~~~~i~~~~ 388 (587)
..+++...+.....+.++++.++......++.. .......++.|++++. .|.+ ...+.......++.+++.++
T Consensus 242 ~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~ 316 (471)
T PRK10504 242 LLHARNNNRALFSLKLFRTRTFSLGLAGSFAGR-----IGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRI 316 (471)
T ss_pred HHHHhcCCCCccCHHHhcccchHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 000011111112234566665443222222211 1234455667777774 6776 45556666677778888899
Q ss_pred HHHhhcccCCchhhHhhhHHHHHHHHHHHHHHHhccCCCCCCCcCccchhHHHHHHHHHHHHHhccccccceeeeeccCC
Q psy11547 389 SCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYP 468 (587)
Q Consensus 389 ~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 468 (587)
.+++.||+|+|+++..+..+.++..+++.+.... ...+.......+.+.+.+....+ ...+..+..|
T Consensus 317 ~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~ 383 (471)
T PRK10504 317 VVQVVNRFGYRRVLVATTLGLALVSLLFMLVALL------------GWYYLLPFVLFLQGMVNSTRFSS-MNTLTLKDLP 383 (471)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHHHHHHhcccc------------ccHHHHHHHHHHHHHHHHHHHHH-HHHHHHHcCC
Confidence 9999999999999988887777666555441111 11121222222333333333333 3467778899
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHhhHHHHHhhhhh
Q psy11547 469 TKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLTKE 504 (587)
Q Consensus 469 ~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~ 504 (587)
++.++.+.|+.++...+|..+++.+.|.+.+..|+.
T Consensus 384 ~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~~~g~~ 419 (471)
T PRK10504 384 DNLASSGNSLLSMIMQLSMSIGVTIAGLLLGLFGQQ 419 (471)
T ss_pred HHhccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 999999999999999999999999999998887753
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-28 Score=231.02 Aligned_cols=361 Identities=15% Similarity=0.202 Sum_probs=270.6
Q ss_pred ccccHHHHHhhhcCCCCCccCcchhHHHHHHHHHHHHHHHHhHHHhhhccchhHHHHHhhHHHHHHHHHHHhcCCCCCCc
Q psy11547 106 FGFSAAATSQLISRDSPYRITSDESTWIASLSAIGTMVGCVLGGYMMDLVGRKMTLIITEVPTILGWALIALAPSLPSSI 185 (587)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~s~~~~g~i~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~ 185 (587)
..+.+++.+.+.+ ++++|+.|.+++.++..+...+..++.|.+.||||.|++..++.++..+-++..+++.+++.
T Consensus 30 W~l~s~l~~~i~~---~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~~~-- 104 (417)
T COG2223 30 WTLFSPLGVFIKS---DFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPS-- 104 (417)
T ss_pred HHHHHHHHhhhcc---ccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHccCCc--
Confidence 3444566666665 59999999999999999999999999999999999999999999999999999999876552
Q ss_pred chhhHHhhhhhhccccccccccceeeeeccCCCcchhHhHHHHHHHHHHHHHHHHhhhhh----h---HHHHHHHHHHHH
Q psy11547 186 LPWIFTGRILTGLGSGMVGAPSRIYTAECSQPHLRGMLSSLASFGVSLGVLFEYSLGAFL----S---WDTVAAISTIIP 258 (587)
Q Consensus 186 ~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l----~---wr~~f~~~~~~~ 258 (587)
++++++++++.|++ |+.+.+...++++|+||+++|.++|++. ..++|..+...++..+ + ||....+..+..
T Consensus 105 ~~~ll~~gll~G~~-GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l 182 (417)
T COG2223 105 TWQLLVIGLLLGLA-GASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVAL 182 (417)
T ss_pred hHHHHHHHHHHhcc-cceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 24899999999996 6778999999999999999999999998 7777776666665555 7 999999988888
Q ss_pred HHHHHHhcc-cCCCchHHHhcCCHHHHHHHHHHHhCCCcchHHHHhhHHHHHHHHHHHhhhhhhHhHHhhhcCCchHHHH
Q psy11547 259 VLSIIAGCL-MPESPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQGLYEFSKRQETQKSRNFKETLAAIVEPACLKPFV 337 (587)
Q Consensus 259 ~~~~~~~~~-~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (587)
++..++.++ +.|.|......++ ..........+++..|.
T Consensus 183 ~v~~v~~~~~~~d~p~~r~~~~~-------------------------------------~~~~~~~~v~~~~~~W~--- 222 (417)
T COG2223 183 AIAAVLAWLGMNDVPEHRASVKP-------------------------------------QLPAQLKAVFSNKDTWL--- 222 (417)
T ss_pred HHHHHHHHHHhCCChhhhccccc-------------------------------------cchhHHHHHhcCcchHH---
Confidence 887666665 6666532110000 00022333444444332
Q ss_pred HHHHHHHHHHhccchhhHhcHHHHHHh-cCCC-cchHHHHHHHHHHHHHHHHhHHHhhcccCCchhhHhhhHHHHHHHHH
Q psy11547 338 ILMLYFLIYQFSGVNPVTFYAVNIFKD-AGAH-VNNNLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTG 415 (587)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~-~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~ 415 (587)
+.+..+..+.++..+..+.|.++++ ++.+ .+++.......+.+.+.++++|+++||+|.++++...+..++++..+
T Consensus 223 --lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~ 300 (417)
T COG2223 223 --LSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAAL 300 (417)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHH
Confidence 2222233344566677777877765 7777 56668888888999999999999999999999999988888888877
Q ss_pred HHHHHHhccCCCCCCCcCccchhHHHHHHHHHHHHHhccccccceeeeeccCCCCchhhHHHHHHHHHHHHHHHHHHhhH
Q psy11547 416 LGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYN 495 (587)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g 495 (587)
+......... ..+.............+.+.+.... +.++..++|.+. |.+.|+....+.+|++.-|...+
T Consensus 301 l~~~~~~~~~--------~~~~~~~~~~~l~l~~~~G~GnGsv-fk~Ip~if~~~~-G~v~G~vga~G~lGGf~lp~~~g 370 (417)
T COG2223 301 LSLFLTGFGH--------GGSFVVFVAVFLALFVFAGLGNGSV-FKMIPVIFPKET-GAVTGIVGAIGGLGGFFLPLAFG 370 (417)
T ss_pred HHcccccccc--------CcchHHHHHHHHHHHHHhccCcchh-eeechHHHHhhh-hHHHHHHHHhccccccchhHHHH
Confidence 7763322000 1223333333444444455554444 688888888754 89999999999999999999999
Q ss_pred HHHHhhh-hhhHHHHHHHHHHHHHHHhheec
Q psy11547 496 MFQTHLT-KEGTFLMYGCISLLGTIFFYVYL 525 (587)
Q Consensus 496 ~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~ 525 (587)
...+.+| +...|+++..+.+++.++.+...
T Consensus 371 ~~~~~tg~~~~~f~~~~~~~~~a~v~~~~~y 401 (417)
T COG2223 371 VSLDLTGSYTGAFMLLLAFYLVALVLTWALY 401 (417)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998 67788888888888877665443
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-29 Score=253.74 Aligned_cols=347 Identities=11% Similarity=0.039 Sum_probs=250.9
Q ss_pred HhhhhhhccccccHHHHHhhhcCCCCCccCcchhHHHHHHHHHHHHHHHHhHHHhhhccchhHHHHHhhHHHHHHHHHHH
Q psy11547 97 LGNVNTGMVFGFSAAATSQLISRDSPYRITSDESTWIASLSAIGTMVGCVLGGYMMDLVGRKMTLIITEVPTILGWALIA 176 (587)
Q Consensus 97 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~i~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~ 176 (587)
++.+...+..+...+.+|.+..+ ++.+..+.|++.+++.++..++++++|+++||+|||++++.+.++.+++.++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~---~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~ 82 (365)
T TIGR00900 6 AAQLISLIGTAITQVALPLYVLA---GTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLP 82 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---hhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHH
Confidence 33444455566667888888775 889999999999999999999999999999999999999999999999988888
Q ss_pred hcC-----CCCCCcchhhHHhhhhhhccccccccccceeeeeccCCCcchhHhHHHHHHHHHHHHHHHHhhhhh----hH
Q psy11547 177 LAP-----SLPSSILPWIFTGRILTGLGSGMVGAPSRIYTAECSQPHLRGMLSSLASFGVSLGVLFEYSLGAFL----SW 247 (587)
Q Consensus 177 ~~~-----~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l----~w 247 (587)
++. +++ .+++.|+++|++.+...+...+++.|++|+++|++++++.+.+..+|.++++.+++.+ +|
T Consensus 83 ~~~~~~~~~~~-----~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~ 157 (365)
T TIGR00900 83 FVALLGGLNIW-----QVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGI 157 (365)
T ss_pred HHHHcCCCcHH-----HHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 877 777 8999999999999999999999999999999999999999999999999999999887 89
Q ss_pred HHHHHHHHHHHHHHHHHhcc--cCCCchHHHhcCCHHHHHHHHHHHhCCCcchHHHHhhHHHHHHHHHHHhhhhhhHhHH
Q psy11547 248 DTVAAISTIIPVLSIIAGCL--MPESPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQGLYEFSKRQETQKSRNFKETLA 325 (587)
Q Consensus 248 r~~f~~~~~~~~~~~~~~~~--~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (587)
|+.|++.++..++..+..+. .||.++. ++.+.++ + . .++..+....
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~--~--------------~--------------~~~~~~~~~~ 205 (365)
T TIGR00900 158 KWAIWVDAVGFAISALLIVSVRIPELAAS--EIQALSN--A--------------V--------------LRDTREGIKF 205 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccCCCc--cccccch--h--------------H--------------HHHHHhHHHH
Confidence 99999988777666554444 3332210 0000000 0 0 0001112233
Q ss_pred hhhcCCchHHHHHHHHHHHHHHhccchhhHhcHHHHHHh-cCCC-cchHHHHHHHHHHHHHHHHhHHHhhcccCCchhhH
Q psy11547 326 AIVEPACLKPFVILMLYFLIYQFSGVNPVTFYAVNIFKD-AGAH-VNNNLAAVIMGIVRLIFTIASCIMMKKMGRRSLTF 403 (587)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~-~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~~~~~~ 403 (587)
.++++..+........... ........+.|.+.++ .+.+ .+.+.......++.+++.++.+++.||++||+.+.
T Consensus 206 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 281 (365)
T TIGR00900 206 VLKNPLLRTLLLLALLFNL----VFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMT 281 (365)
T ss_pred HHcCcHHHHHHHHHHHHHH----HHHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHH
Confidence 3444443322222121111 1112222566777765 6676 45567777788889999999999999999999888
Q ss_pred hhhHHHHHHHHHHHHHHHhccCCCCCCCcCccchhHHHHHHHHHHHHHhccccccceeeeeccCCCCchhhHHHHHHHHH
Q psy11547 404 ISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCAC 483 (587)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~ 483 (587)
.+..+.+++...+... ..+.+...+..++.+.+... ..+...+++.|.+|++.|+++.|+.++..
T Consensus 282 ~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 346 (365)
T TIGR00900 282 GAIFVIGLAILVVGLT--------------PPNFPLFLVLWFAIGVGYGP-INVPQGTLLQRRVPAELLGRVFGAQFSLS 346 (365)
T ss_pred HHHHHHHHHHHHHHhh--------------chhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 7766666655554441 01123333333333333333 34455588899999999999999999999
Q ss_pred HHHHHHHHHhhHHHHHhhh
Q psy11547 484 HFFIFLTVKSYNMFQTHLT 502 (587)
Q Consensus 484 ~~g~~i~~~~~g~l~~~~g 502 (587)
.++..+++.+.|.+.|..|
T Consensus 347 ~~~~~~g~~~~g~l~~~~g 365 (365)
T TIGR00900 347 HAAWPLGLILAGPLADHLG 365 (365)
T ss_pred HHHHHHHHHHHHHHHHHcC
Confidence 9999999999999998754
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-28 Score=245.66 Aligned_cols=339 Identities=23% Similarity=0.312 Sum_probs=276.6
Q ss_pred HHHhhhhhhccccccHHHHHhhhcCCCCCccCcchhHHHHHHHHHHHHHHHHhHHHhhhccchhHHHHHhhHHHHHHHHH
Q psy11547 95 ANLGNVNTGMVFGFSAAATSQLISRDSPYRITSDESTWIASLSAIGTMVGCVLGGYMMDLVGRKMTLIITEVPTILGWAL 174 (587)
Q Consensus 95 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~i~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~ 174 (587)
..++.+...++.....+..|.+.++ ++.+..+.+++.+.+.++..+++++.|+++||+|||+.+..+.++..++.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~ 80 (352)
T cd06174 4 LFLGFFLSGLDRGLLSPALPLLAED---LGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLL 80 (352)
T ss_pred HHHHHHHHHHhhhhhHhhHHHHHHH---cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHH
Confidence 4455666777788888888888875 8999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCCCcchhhHHhhhhhhccccccccccceeeeeccCCCcchhHhHHHHHHHHHHHHHHHHhhhhh----hHHHH
Q psy11547 175 IALAPSLPSSILPWIFTGRILTGLGSGMVGAPSRIYTAECSQPHLRGMLSSLASFGVSLGVLFEYSLGAFL----SWDTV 250 (587)
Q Consensus 175 ~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l----~wr~~ 250 (587)
..++++++ .++++|++.|++.+...+...+++.|++|+++|++.+++......+|..+++.+++.+ +||+.
T Consensus 81 ~~~~~~~~-----~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 155 (352)
T cd06174 81 LAFASSLW-----LLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWL 155 (352)
T ss_pred HHHhccHH-----HHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 99999988 9999999999999999999999999999999999999999999999999999999888 79999
Q ss_pred HHHHHHHHHHHHHHhcccCCCchHHHhcCCHHHHHHHHHHHhCCCcchHHHHhhHHHHHHHHHHHhhhhhhHhHHhhhcC
Q psy11547 251 AAISTIIPVLSIIAGCLMPESPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQGLYEFSKRQETQKSRNFKETLAAIVEP 330 (587)
Q Consensus 251 f~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (587)
|++.+++.++..+...+++
T Consensus 156 ~~~~~~~~~~~~~~~~~~~------------------------------------------------------------- 174 (352)
T cd06174 156 FLILAILGLLLALLLLFLL------------------------------------------------------------- 174 (352)
T ss_pred HHHHHHHHHHHHHHHHHHH-------------------------------------------------------------
Confidence 9998888877766554332
Q ss_pred CchHHHHHHHHHHHHHHhccchhhHhcHHHHHHhc-CCC-cchHHHHHHHHHHHHHHHHhHHHhhcccCCch-hhHhhhH
Q psy11547 331 ACLKPFVILMLYFLIYQFSGVNPVTFYAVNIFKDA-GAH-VNNNLAAVIMGIVRLIFTIASCIMMKKMGRRS-LTFISSI 407 (587)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~-~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~~~-~~~~~~~ 407 (587)
+. +.......+...........+.+.+.++. +.+ .+.+.......++.+++.++.+++.||++||+ .+..+..
T Consensus 175 ---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 250 (352)
T cd06174 175 ---RL-LLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLL 250 (352)
T ss_pred ---HH-HHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 11 11122222223333555667777777764 666 55677788888999999999999999999999 8888888
Q ss_pred HHHHHHHHHHHHHHhccCCCCCCCcCccchhHHHHHHHHHHHHHhccccccceeeeeccCCCCchhhHHHHHHHHHHHHH
Q psy11547 408 GCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFI 487 (587)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~ 487 (587)
+..++.+.+.. ..+.+.......+.+.+. ....+...+++.|..|++.|++..|+.+....++.
T Consensus 251 ~~~i~~~~~~~---------------~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (352)
T cd06174 251 LAALGLLLLAL---------------APSLALLLVALLLLGFGL-GFAFPALLTLASELAPPEARGTASGLFNTFGSLGG 314 (352)
T ss_pred HHHHHHHHHHH---------------hccHHHHHHHHHHHHHHH-hccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHH
Confidence 87777776665 122333333333444333 34456666899999999999999999999999999
Q ss_pred HHHHHhhHHHHHhhhhhhHHHHHHHHHHHHHHHhh
Q psy11547 488 FLTVKSYNMFQTHLTKEGTFLMYGCISLLGTIFFY 522 (587)
Q Consensus 488 ~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 522 (587)
.+++.+.+.+.+..++...+.+.+++.+++.++.+
T Consensus 315 ~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~~ 349 (352)
T cd06174 315 ALGPLLAGLLLDTGGYGGVFLILAALALLAALLLL 349 (352)
T ss_pred HHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHhe
Confidence 99999999999989999999988888887776543
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-28 Score=247.31 Aligned_cols=353 Identities=12% Similarity=0.122 Sum_probs=235.2
Q ss_pred HHHHhhhcCCCCCccCcchhHHHHHHHHHHHHHHHHhHHHhhhccchhHHHHHhhHHHHHHHHHHH---hc-CCCCCCcc
Q psy11547 111 AATSQLISRDSPYRITSDESTWIASLSAIGTMVGCVLGGYMMDLVGRKMTLIITEVPTILGWALIA---LA-PSLPSSIL 186 (587)
Q Consensus 111 ~~~~~~~~~~~~~~~s~~~~g~i~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~---~~-~~~~~~~~ 186 (587)
+.++.+.++ +|.+..+.|++.+.+.+++.++++++|+++||+|||+++..+.++++++++++. +. ++++
T Consensus 34 ~~~~~~~~~---~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~---- 106 (402)
T TIGR00897 34 GWLSPFLKA---LGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGHANYP---- 106 (402)
T ss_pred HhHHHHHHH---hCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCccHH----
Confidence 344555553 899999999999999999999999999999999999999999999999877653 32 4566
Q ss_pred hhhHHhhhhhhccccccccccceeeeeccCCCcchhHhHHHHHHHHHHH-HHHHHhhhhh----hHHHHHHHHHHHHHHH
Q psy11547 187 PWIFTGRILTGLGSGMVGAPSRIYTAECSQPHLRGMLSSLASFGVSLGV-LFEYSLGAFL----SWDTVAAISTIIPVLS 261 (587)
Q Consensus 187 ~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~-~i~~~l~~~l----~wr~~f~~~~~~~~~~ 261 (587)
.+++.|+++|++.+...+...+++.+++|+++|++++++.+.+.++|. ++++.+++.+ +|+..++......++.
T Consensus 107 -~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~ 185 (402)
T TIGR00897 107 -LILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSALAFVLTG 185 (402)
T ss_pred -HHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHH
Confidence 788899999999988878888888899999999999999999999997 5788888765 7655555443333332
Q ss_pred HHHh-cccCCCchHHHhcCCHHHHHHHHHHHhCCCcchHHHHhhHHHHHHHHHHHhhhhhhHhHHhhhcCCchHHHHHHH
Q psy11547 262 IIAG-CLMPESPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQGLYEFSKRQETQKSRNFKETLAAIVEPACLKPFVILM 340 (587)
Q Consensus 262 ~~~~-~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (587)
.++. ++.++.++... ++++++ .++..+.....++++..+...+
T Consensus 186 ~~~~~~~~~~~~~~~~-~~~~~~--------------------------------~~~~~~~~~~~~~~~~~~~~~~--- 229 (402)
T TIGR00897 186 GVIALFSNKDIFTPQH-MQTREK--------------------------------FSELGKAATILFTNPNVLLGGM--- 229 (402)
T ss_pred HHHHHhccCCCCCccc-ccCCcc--------------------------------hhhHHHHHHHHHcChhHHHHHH---
Confidence 2222 22444321000 000000 0000112223445554332221
Q ss_pred HHHHHHHhccchhhHhcHHHHHHhcCCC-cchHHHHHHHHHHHHHHHHhHHHhhcccCCchhhH-hhhHHHHHHHHHHHH
Q psy11547 341 LYFLIYQFSGVNPVTFYAVNIFKDAGAH-VNNNLAAVIMGIVRLIFTIASCIMMKKMGRRSLTF-ISSIGCGVSMTGLGL 418 (587)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~~~~~~-~~~~~~~~~~~~~~~ 418 (587)
. .+...........+.|.+.++.|++ .+.+.......++.+++.++.|++.||++||+.+. .+.+...++.+.+..
T Consensus 230 -~-~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~ 307 (402)
T TIGR00897 230 -V-RIINTIGLFGFAVFLPMFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYY 307 (402)
T ss_pred -H-HHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHH
Confidence 1 1122223455667888888888887 44456666778889999999999999999887654 233333333222222
Q ss_pred HHHhccCCCCCCCcCccchhHHHHHHHHHHHHHhccccccceeeeeccCCCCchhhHHHHHHHHHHHHHHHHHHhhHHHH
Q psy11547 419 YIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQ 498 (587)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~ 498 (587)
.... . ....+...+...+++.+.. ...+.. ....|..| +.|+++.|+.+....++..++|.+.|.+.
T Consensus 308 ~~~~--~--------~~~~~~~~~~~~~~G~~~~-~~~~~~-~~~~~~~~-~~~g~~~g~~~~~~~lg~~~gp~i~g~l~ 374 (402)
T TIGR00897 308 IPQH--F--------GHSFAVALIIAIALGIFLA-GYVPLA-AVFPTLAP-KHKGAAMSVLNLSAGLSAFLAPAIAVLFI 374 (402)
T ss_pred HHHc--c--------CCcHHHHHHHHHHHHHHHH-HHHHHH-HHHHhhCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 0 1122223333333333332 223332 44566555 57999999999999999999999999999
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHhh
Q psy11547 499 THLTKEGTFLMYGCISLLGTIFFY 522 (587)
Q Consensus 499 ~~~g~~~~~~~~~~~~~~~~~~~~ 522 (587)
+..|+...+++.+++.+++.++..
T Consensus 375 ~~~g~~~~~~~~a~~~~i~~~~~~ 398 (402)
T TIGR00897 375 GFFGAIGVVWIFAALYVVSAFLTA 398 (402)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHH
Confidence 999999999988888777666543
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-28 Score=248.68 Aligned_cols=362 Identities=17% Similarity=0.179 Sum_probs=239.5
Q ss_pred hhhhccccccHHHHHhhhcCCCCCccCcchhHHHHHH-----HHHHHHHHHHhHHHhhhccchhHHHHHhhHHHHHHHHH
Q psy11547 100 VNTGMVFGFSAAATSQLISRDSPYRITSDESTWIASL-----SAIGTMVGCVLGGYMMDLVGRKMTLIITEVPTILGWAL 174 (587)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~i~s~-----~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~ 174 (587)
+.+.++....+...+.+.++. ..+.++.+.+.+.+. ..++..+++++.|+++||+|||+++.++.++..++.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~ 81 (394)
T TIGR00883 3 AVEWFDFYLYGFAAVLVFHTF-FPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLL 81 (394)
T ss_pred chhHHHHHHHHHHHHHHHHHh-cCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 345566666666666666541 123556666665543 33444578999999999999999999999999999999
Q ss_pred HHhcCCCCCCc---chhhHHhhhhhhccccccccccceeeeeccCCCcchhHhHHHHHHHHHHHHHHHHhhhhh------
Q psy11547 175 IALAPSLPSSI---LPWIFTGRILTGLGSGMVGAPSRIYTAECSQPHLRGMLSSLASFGVSLGVLFEYSLGAFL------ 245 (587)
Q Consensus 175 ~~~~~~~~~~~---~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l------ 245 (587)
+++++++.... .+.++++|+++|++.+...+...+++.|++++++|++..++...+..+|.++++.++..+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~ 161 (394)
T TIGR00883 82 IGLLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGD 161 (394)
T ss_pred HhhCCChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 99999875111 113788999999999999999999999999999999999999999999999998876432
Q ss_pred ------hHHHHHHHHHHHHHHHHHHhcccCCCchHHHhcCCHHHHHHHHHHHhCCCcchHHHHhhHHHHHHHHHHHhhhh
Q psy11547 246 ------SWDTVAAISTIIPVLSIIAGCLMPESPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQGLYEFSKRQETQKSRN 319 (587)
Q Consensus 246 ------~wr~~f~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (587)
+||+.|++.+++.++..++...+||+|++..++++ ++..
T Consensus 162 ~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------------~~~~ 206 (394)
T TIGR00883 162 DALLEWGWRIPFLVSAVLVLIGLYLRRNLEETPVFEKAQEK-----------------------------------HKKK 206 (394)
T ss_pred HHhhccchHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHhc-----------------------------------cccc
Confidence 79999998887777666555557776543111000 0001
Q ss_pred hhHhHHhhhcCCchHHHHHHHHHHHHHHhccchhhHhcHHHHH-HhcCCC-cchHHHHHHHHHHHHHHHHhHHHhhcccC
Q psy11547 320 FKETLAAIVEPACLKPFVILMLYFLIYQFSGVNPVTFYAVNIF-KDAGAH-VNNNLAAVIMGIVRLIFTIASCIMMKKMG 397 (587)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~-~~~~~~~~~~~~~~~i~~~~~g~l~d~~g 397 (587)
..+..+.++++. +.........+ ...........+.|.+. ++.+.+ ...+.......+..+++.++.+++.||+|
T Consensus 207 ~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g 283 (394)
T TIGR00883 207 RGPIRETLTKHR--KPFLLGLGLVI-ATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIG 283 (394)
T ss_pred cCCHHHHHHhch--HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 112233333332 11222222222 22223444556677777 446676 44556677778889999999999999999
Q ss_pred CchhhHhhhHHHHHHHHHHHHHHHhccCCCCCCCcCccchhHHHHHHHHHHHHHhccccccceeeeeccCCCCchhhHHH
Q psy11547 398 RRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGG 477 (587)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g 477 (587)
||+.+.....+..+..+.+...... ....+.......+.+.+.... .+...+++.|.+|++.|+++.+
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~p~~~~~~~~~ 351 (394)
T TIGR00883 284 RRPVLIIFTVLAALLAVPLLMALLD-----------SGSFTLFFFLVLGLALIGGMY-TGPMGSFLPELFPTEVRYTGAS 351 (394)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhc-----------CCchHHHHHHHHHHHHHHHHH-hhhHHHHHHHhCCccceeeEee
Confidence 9987765544433322111111111 112223333333333333333 3444588999999999999999
Q ss_pred HHH-HHHHHHHHHHHHhhHHHHHhhh-hhhHHHHHHH
Q psy11547 478 LTT-CACHFFIFLTVKSYNMFQTHLT-KEGTFLMYGC 512 (587)
Q Consensus 478 ~~~-~~~~~g~~i~~~~~g~l~~~~g-~~~~~~~~~~ 512 (587)
+.. ....+|..++|.+.|.+.++.| +...++..++
T Consensus 352 ~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~ 388 (394)
T TIGR00883 352 LAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAA 388 (394)
T ss_pred ehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHH
Confidence 854 4456788899999999999988 6555544443
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.7e-28 Score=246.23 Aligned_cols=368 Identities=13% Similarity=0.060 Sum_probs=246.2
Q ss_pred HHHHHHHHHhhhhhhccccccHHHHHhhhcCCCCCccCcchhHHHHHHHHHHHHHHHHhHHHhhhccchhHHHHHhhHHH
Q psy11547 89 LTLAVFANLGNVNTGMVFGFSAAATSQLISRDSPYRITSDESTWIASLSAIGTMVGCVLGGYMMDLVGRKMTLIITEVPT 168 (587)
Q Consensus 89 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~i~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~ 168 (587)
........+..+...++.....+.+|.+.++ ++.+..+.++..+++.++++++++++|+++||+|||++++.+.+++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~p~l~~i~~~---~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~ 91 (413)
T PRK15403 15 LFFPMALILYDFAAYLTTDLIQPGIINVVRD---FNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIF 91 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCHHHHHHH---hCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHH
Confidence 3334444556666777788888999998885 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCcchhhHHhhhhhhccccccccccceeeeeccCCCcchhHhHHHHHHHHHHHHHHHHhhhhh---
Q psy11547 169 ILGWALIALAPSLPSSILPWIFTGRILTGLGSGMVGAPSRIYTAECSQPHLRGMLSSLASFGVSLGVLFEYSLGAFL--- 245 (587)
Q Consensus 169 ~i~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l--- 245 (587)
++++++++++++++ .++++|+++|++.+...+...+++.|++|+++|++++++...+..+|.++||++++.+
T Consensus 92 ~~~~~~~~~a~~~~-----~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~ 166 (413)
T PRK15403 92 TLACAATLFTTSMT-----QFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHF 166 (413)
T ss_pred HHHHHHHHHcCCHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999 9999999999998877777778889999999999999999999999999999999877
Q ss_pred -hHHHHHHHHHHHHHHHHHHhc-ccCCCchHHHhcCCHHHHHHHHHHHhCCCcchHHHHhhHHHHHHHHHHHhhhhhhHh
Q psy11547 246 -SWDTVAAISTIIPVLSIIAGC-LMPESPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQGLYEFSKRQETQKSRNFKET 323 (587)
Q Consensus 246 -~wr~~f~~~~~~~~~~~~~~~-~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (587)
+||+.|++.+++.++..+..+ .+||+++. +++... .+...+.+
T Consensus 167 ~gw~~~f~~~~~~~~i~~~~~~~~lp~~~~~---~~~~~~--------------------------------~~~~~~~~ 211 (413)
T PRK15403 167 VHWKVLFAIIAVMGLIAFVGLLLAMPETVKR---GAVPFS--------------------------------AKSVLRDF 211 (413)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHhCCCCccc---cCCCCC--------------------------------hHHHHHHH
Confidence 899999999988877766544 48887521 000000 00112234
Q ss_pred HHhhhcCCchHHHHHHHHHHHHHHhccchhhHhcHHHHHHh-cCCC-cchHHHHHHHHHHHHHHHHhHHHhhcccCCchh
Q psy11547 324 LAAIVEPACLKPFVILMLYFLIYQFSGVNPVTFYAVNIFKD-AGAH-VNNNLAAVIMGIVRLIFTIASCIMMKKMGRRSL 401 (587)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~-~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~~~~ 401 (587)
.+.++++.++...+.. +........+..+.|.++++ .|++ .+.++......++.+++..+.+.+.++..+++.
T Consensus 212 ~~ll~~~~~~~~~l~~-----~~~~~~~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~ 286 (413)
T PRK15403 212 RNVFRNRLFLTGAATL-----SLSYIPMMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRF 286 (413)
T ss_pred HHHHcCHHHHHHHHHH-----HHHHHHHHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhH
Confidence 4556665444322221 11222233455566777766 4677 334555555666777777777776655444343
Q ss_pred hHhhhHHHHHHHHHHHHHHHhccCCCCCCCcCccchhHHHHHHHHHHHHHhccccccceeeeeccCCCCchhhHHHHHHH
Q psy11547 402 TFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTC 481 (587)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~ 481 (587)
......+..++.+++....... ....+.......+++.+.+... |...... ..-....+|++.++.+.
T Consensus 287 ~~~~~~~~~ig~~l~~~~~~~~----------~~~~~~~~~~~~l~~~G~~~~~-p~~~~~a-l~~~~~~~G~a~a~~~~ 354 (413)
T PRK15403 287 IWRAVPIQLVGLALLIVGNLLW----------PHVWLWSVLGTSLYAFGIGLIF-PTLFRFT-LFSNNLPKGTVSASLNM 354 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHc----------cccHHHHHHHHHHHHHHHHHHh-HHHHHHH-hccCCCCCcHHHHHHHH
Confidence 3322233333333332211110 1111122333333444433332 2222111 11122236999999999
Q ss_pred HHHHHHHHHHHhhHHHHHhhhhhhHHHHHHHHHHHH
Q psy11547 482 ACHFFIFLTVKSYNMFQTHLTKEGTFLMYGCISLLG 517 (587)
Q Consensus 482 ~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~ 517 (587)
....+..+++...+++.+. +....|...++++.+.
T Consensus 355 ~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~ 389 (413)
T PRK15403 355 VILMVMAVSVEIGRWLWFN-GGRLPFHLLAVVAGVI 389 (413)
T ss_pred HHHHHHHHHHHHHHHHHHc-CCchHHHHHHHHHHHH
Confidence 9999999999999988776 5556666555555443
|
|
| >KOG2533|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-29 Score=252.01 Aligned_cols=285 Identities=16% Similarity=0.163 Sum_probs=221.3
Q ss_pred CCchHHHHHHHHHHHHhhhhhhccccccHHHHHhhhcCCCCCccCcchhHHHHHHHHHHHHHHHHhHHHhhhccchhHHH
Q psy11547 82 GQKVSLSLTLAVFANLGNVNTGMVFGFSAAATSQLISRDSPYRITSDESTWIASLSAIGTMVGCVLGGYMMDLVGRKMTL 161 (587)
Q Consensus 82 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~i~s~~~l~~~i~~~~~g~l~dr~Grr~~l 161 (587)
+..++..+.++..+++..+....+...++- +.+....+|.+....+.+++.+++.++++++.+++|.+.||++-.+.+
T Consensus 37 ~l~~K~dl~i~~~~~~~y~~~~~d~~si~~--a~l~g~~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l 114 (495)
T KOG2533|consen 37 KLLRKLDLFILPFLCYLYFHAYLDKSSIVN--ASLSGLKEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGL 114 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcchhcchh--HHHcCCccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHH
Confidence 334455666777777777777776655543 344433347999999999999999999999999999999999999999
Q ss_pred HHhhHHHHHHHHHHHhcCCCCCCcchhhHHhhhhhhccccccccccceeeeeccCCCcchhHhHHHHHHHHHHHHHHHHh
Q psy11547 162 IITEVPTILGWALIALAPSLPSSILPWIFTGRILTGLGSGMVGAPSRIYTAECSQPHLRGMLSSLASFGVSLGVLFEYSL 241 (587)
Q Consensus 162 ~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l 241 (587)
....+++++..++....+|++ .+++.|++.|+..+..+|....+++.|+.+++|++.++++.+..++|.++|+++
T Consensus 115 ~~~~~~w~~~~~~~~~~~s~~-----~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggli 189 (495)
T KOG2533|consen 115 SVSGILWGLFGFLTAAVHSFP-----GLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLI 189 (495)
T ss_pred HHHHHHHHHHHHHHHHHhhhH-----HHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHH
Confidence 999999999999999999999 999999999999999999999999999999999999999999999999999999
Q ss_pred hhhh----------hHHHHHHHHHHHHHHHHHHhcc-cCCCch--HHHhcCCHHHHHHHHHHHhCCCcchHHHHhhHHHH
Q psy11547 242 GAFL----------SWDTVAAISTIIPVLSIIAGCL-MPESPS--WLLSQGRKDACRNSLRRLRANNYDVEKEVQGLYEF 308 (587)
Q Consensus 242 ~~~l----------~wr~~f~~~~~~~~~~~~~~~~-~~esp~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (587)
+..+ ||||.|++.++++++..++.++ +|+.|. +...+++.+-. .++.+..+..
T Consensus 190 A~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~~~~fl~~~ek~~~---~~~~~~~~~~----------- 255 (495)
T KOG2533|consen 190 AYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDNPSKAWFLTDEEKELV---VERLRESPSG----------- 255 (495)
T ss_pred HHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecCChhhccccchHHHHHH---HHHHHhccCC-----------
Confidence 9883 9999999999999988877766 999986 22222111111 1111111100
Q ss_pred HHHHHHHhhhhhhHhHHhhhcCCchHHHHHHHHHHHHHHhccchhhHhcHHHHHHh-cCCC-cchHHHHHHHHHHHHHHH
Q psy11547 309 SKRQETQKSRNFKETLAAIVEPACLKPFVILMLYFLIYQFSGVNPVTFYAVNIFKD-AGAH-VNNNLAAVIMGIVRLIFT 386 (587)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~-~~~~~~~~~~~~~~~i~~ 386 (587)
...++.+++.+.+.++++..|. ..++.++.....+.+.+|+|.++++ .+++ .++....+...++++++.
T Consensus 256 ----~~~~~~~~~~~~~a~~dp~vw~-----~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~ 326 (495)
T KOG2533|consen 256 ----GIENKFKWKGFKEALKDPGVWP-----FSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGL 326 (495)
T ss_pred ----CcccccCHHHHHHHHhchhHHH-----HHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHH
Confidence 0001134566777777776443 3333333444567789999999998 4576 677788899999999999
Q ss_pred HhHHHhhccc
Q psy11547 387 IASCIMMKKM 396 (587)
Q Consensus 387 ~~~g~l~d~~ 396 (587)
++.|+++||+
T Consensus 327 i~ag~lsdr~ 336 (495)
T KOG2533|consen 327 ILAGYLSDRL 336 (495)
T ss_pred HHHHHHHHHH
Confidence 9999999995
|
|
| >KOG2532|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.2e-29 Score=250.24 Aligned_cols=360 Identities=19% Similarity=0.215 Sum_probs=262.9
Q ss_pred CCccCcchhHHHHHHHHHHHHHHHHhHHHhhhccchhHHHHHhhHHHHHHHHHHHhcCCCCCCcchhhHHhhhhhhcccc
Q psy11547 122 PYRITSDESTWIASLSAIGTMVGCVLGGYMMDLVGRKMTLIITEVPTILGWALIALAPSLPSSILPWIFTGRILTGLGSG 201 (587)
Q Consensus 122 ~~~~s~~~~g~i~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g 201 (587)
+++++..|.|++.+.++.|+.+++++.|+++||||-|+++..+.++.++++++..++.+.. ++.+++.|++||++.|
T Consensus 67 ~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~---~~~~~~~R~lqGl~~g 143 (466)
T KOG2532|consen 67 EYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIG---FYLLLVLRFLQGLGQG 143 (466)
T ss_pred eecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhc---chhhHHHHHHhHHHHh
Confidence 5899999999999999999999999999999999999999999999999999999886543 1277999999999999
Q ss_pred ccccccceeeeeccCCCcchhHhHHHHHHHHHHHHHHHHhhhhh-----hHHHHHHHHHHHHHHHHHHhcc-cCCCchHH
Q psy11547 202 MVGAPSRIYTAECSQPHLRGMLSSLASFGVSLGVLFEYSLGAFL-----SWDTVAAISTIIPVLSIIAGCL-MPESPSWL 275 (587)
Q Consensus 202 ~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l-----~wr~~f~~~~~~~~~~~~~~~~-~~esp~~~ 275 (587)
..+|+...+..+|.|++||++..++...+..+|.+++.++++++ ||+++|++.++++++..+++++ ..|+|...
T Consensus 144 ~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~~h 223 (466)
T KOG2532|consen 144 VLFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDSPSKH 223 (466)
T ss_pred HHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCCcccC
Confidence 99999999999999999999999999999999999999999988 8999999999999988877765 66777421
Q ss_pred HhcCCHHHHHHHHHHHhCCCcchHHHHhhHHHHHHHHHHHhhhhhhHhHHhhhcCCchHHHHHHHHHHHHHHhccchhhH
Q psy11547 276 LSQGRKDACRNSLRRLRANNYDVEKEVQGLYEFSKRQETQKSRNFKETLAAIVEPACLKPFVILMLYFLIYQFSGVNPVT 355 (587)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (587)
+.-..+|. +.+++.+.+.. .++....+++++++++. ++.+.+..+....++..+.
T Consensus 224 -~~is~~El------------------~~I~~~k~~~~-~~~~~~vP~~~i~ts~~-----vwai~~~~f~~~~~~~~l~ 278 (466)
T KOG2532|consen 224 -PNISEKEL------------------KYIEKGKSEAH-VKKKPPVPYKAILTSPP-----VWAIWISAFGGNWGFYLLL 278 (466)
T ss_pred -CCCCHHHH------------------HHHHhcccccc-cCCCCCCCHHHHHcCHH-----HHHHHHHHHHHHHHHHHHH
Confidence 11111111 11111111100 01113456677777664 4444555555556678889
Q ss_pred hcHHHHHHh-cCCC-cchHHHHHHHHHHHHHHHHhHHHhhcccCCc---------hhhHhhhHHHHHHHHHHHHHHHhcc
Q psy11547 356 FYAVNIFKD-AGAH-VNNNLAAVIMGIVRLIFTIASCIMMKKMGRR---------SLTFISSIGCGVSMTGLGLYIFATK 424 (587)
Q Consensus 356 ~~~~~~~~~-~g~~-~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~~---------~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (587)
.|.|.|+++ .+++ .+.++...+..+...+..+++|.++||+.+| ..-.++....+++++.+++...
T Consensus 279 ~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~~~--- 355 (466)
T KOG2532|consen 279 TYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFTSD--- 355 (466)
T ss_pred HHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeecCC---
Confidence 999999987 7888 7778899999999999999999999988652 2223344444444444443111
Q ss_pred CCCCCCCcCccchhHHHHHHHHHHHHHhccccccceeeeeccCCCCchhhHHHHHHHHHHHHHHHHHHhhHHHHH---hh
Q psy11547 425 DFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQT---HL 501 (587)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~---~~ 501 (587)
...+..++.+.+.....+.. .+..+.-..+. .++..+..+|+.+....+.++++|.+.|.+.. ..
T Consensus 356 ----------~~~~~a~~~l~~~~~~~g~~-~~Gf~~~~~~~-apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~ 423 (466)
T KOG2532|consen 356 ----------EHRLLAVILLTIAIGLSGFN-ISGFYKNHQDI-APQHAGFVMGIINFVGALAGFIAPLLVGIIVTDNTRE 423 (466)
T ss_pred ----------CcchHHHHHHHHHHHHcccc-hhhhHhhhhhc-cchHHHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHH
Confidence 12222222222222222221 11111222222 45677999999999999999999999999883 34
Q ss_pred hhhhHHHHHHHHHHHHHHHhhee
Q psy11547 502 TKEGTFLMYGCISLLGTIFFYVY 524 (587)
Q Consensus 502 g~~~~~~~~~~~~~~~~~~~~~~ 524 (587)
.|+.+|++.+++.+++.++..++
T Consensus 424 eW~~VF~i~a~i~~~~~i~f~~f 446 (466)
T KOG2532|consen 424 EWRIVFLIAAGILIVGNIIFLFF 446 (466)
T ss_pred HHHHHHHHHHHHHHHhchheeEe
Confidence 78999999999998888654444
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-28 Score=246.02 Aligned_cols=356 Identities=14% Similarity=0.086 Sum_probs=245.9
Q ss_pred hhhhhhccccccHHHHHhhhcCCCCCccCcchhHHHHHHHHHHHHHHHHhHHHhhhccchhHHHHH-hhHHHHHHHHHHH
Q psy11547 98 GNVNTGMVFGFSAAATSQLISRDSPYRITSDESTWIASLSAIGTMVGCVLGGYMMDLVGRKMTLII-TEVPTILGWALIA 176 (587)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~i~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~-~~~~~~i~~~~~~ 176 (587)
.++..++..+...+.+|.+..+ ++|.|..+.|++.+++.++..+.+++.|+++||+||||.++. +.++..++.++++
T Consensus 5 ~~~~~~~~~~~~~~~l~~~l~~--~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~ 82 (375)
T TIGR00899 5 VAFLTGIAGALQFPTLSLFLSE--EVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFA 82 (375)
T ss_pred HHHHHHHHHHHHhhHHHHHHHc--ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHH
Confidence 3555666777777888875432 499999999999999999999999999999999999887654 5666677788899
Q ss_pred hcCCCCCCcchhhHHhhhhhhccccccccccceeeeeccCCCcchhH--hHHHHHHHHHHHHHHHHhhhhh----hHHHH
Q psy11547 177 LAPSLPSSILPWIFTGRILTGLGSGMVGAPSRIYTAECSQPHLRGML--SSLASFGVSLGVLFEYSLGAFL----SWDTV 250 (587)
Q Consensus 177 ~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~--~~~~~~~~~~G~~i~~~l~~~l----~wr~~ 250 (587)
++++++ .+++.|+++|.+.+...|...+++.|+.|+++|++. .++...+.++|.++++.+++.+ +||+.
T Consensus 83 ~~~~~~-----~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~ 157 (375)
T TIGR00899 83 WNRNYF-----LLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVM 157 (375)
T ss_pred hcchHH-----HHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHH
Confidence 999988 888999999988888888888888898887777654 5777888889999999988877 89999
Q ss_pred HHHHHHHHHHHHHHhcc-cCCCchHHHhcCCHHHHHHHHHHHhCCCcchHHHHhhHHHHHHHHHHHhhhhhhHhHHhhhc
Q psy11547 251 AAISTIIPVLSIIAGCL-MPESPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQGLYEFSKRQETQKSRNFKETLAAIVE 329 (587)
Q Consensus 251 f~~~~~~~~~~~~~~~~-~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (587)
|++.+++.++..++.++ +||.|++...+. + ..+..+.+++
T Consensus 158 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------~---~~~~~~~~~~ 198 (375)
T TIGR00899 158 FLTAALAFVLCGVLVWLFLPSYPRGAPGAL------------------------------------T---RLEVRGLLAS 198 (375)
T ss_pred HHHHHHHHHHHHHHHHHhCCCcccCccccc------------------------------------C---cchhhhhhcC
Confidence 99998887776665544 888763210000 0 0001112333
Q ss_pred CCchHHHHHHHHHHHHHHhccchhhHhcHHHHH-HhcCCC-cchHHHHHHHHHHHHHHHHhHHHhhcccCCchhhHhhhH
Q psy11547 330 PACLKPFVILMLYFLIYQFSGVNPVTFYAVNIF-KDAGAH-VNNNLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSI 407 (587)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~-~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~~~~~~~~~~ 407 (587)
+..+......+.... .......+.|.++ ++.|.+ ...+.......+..+++.++.+++.||++||+.+.++.+
T Consensus 199 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~ 273 (375)
T TIGR00899 199 RDTRLLFVACTLMWG-----CNILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAAL 273 (375)
T ss_pred cchHHHHHHHHHHHH-----HHHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHH
Confidence 333222111111111 1122333445554 456776 334455555556677788999999999999998877665
Q ss_pred HHHHHHHHHHHHHHhccCCCCCCCcCccchhHHHHHHHHHHHHHhccccccceeeeeccCCCCchhhHHHHHHHHHHHHH
Q psy11547 408 GCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFI 487 (587)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~ 487 (587)
+..+..+.+.. . .+.+.......+.+.+.+.. .+....+..|..|++ ++++.++.+...++|.
T Consensus 274 ~~~~~~~~~~~---~------------~~~~~~~~~~~~~g~~~g~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~ 336 (375)
T TIGR00899 274 AGVAFYTGLAA---D------------NSLWALLMLQLLNAIFIGIL-AGIGMLYFQDLMPGR-AGAATTLYTNTGRVGW 336 (375)
T ss_pred HHHHHHHHHHH---H------------HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCcch-hhHHHHHHHHHHHHHH
Confidence 54444333222 1 12222222222323333222 344446778888765 5799999999999999
Q ss_pred HHHHHhhHHHHHhhhhhhHHHHHHHHHHHHHHHh
Q psy11547 488 FLTVKSYNMFQTHLTKEGTFLMYGCISLLGTIFF 521 (587)
Q Consensus 488 ~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~ 521 (587)
.++|.+.|.+.+..|+...|++.+++++++.++.
T Consensus 337 ~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~ 370 (375)
T TIGR00899 337 IIAGSVGGILAERWSYHAVYWFAIVMLIVALFCL 370 (375)
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHH
Confidence 9999999999999999989988888777766654
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.3e-28 Score=244.60 Aligned_cols=338 Identities=15% Similarity=0.073 Sum_probs=240.2
Q ss_pred hccccccHHHHHhhhcCCCCCccCcchhHHHHHHHHHHHHHHHHhHHHhhhccchhHHHHHhhHHHHHHHHHHHhcCCCC
Q psy11547 103 GMVFGFSAAATSQLISRDSPYRITSDESTWIASLSAIGTMVGCVLGGYMMDLVGRKMTLIITEVPTILGWALIALAPSLP 182 (587)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~i~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~ 182 (587)
.+......|.+|.+.++ +|.++.+.+++.+++.++..++++++|+++||+|||+++..+.++..++.++++++++++
T Consensus 19 ~~~~~~~~p~~~~i~~~---~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~ 95 (401)
T PRK11043 19 FLATDMYLPAFKAIQAD---LQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVESAA 95 (401)
T ss_pred HHHHHHHHhhHHHHHHH---HCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 34455666778888775 999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCcchhhHHhhhhhhccccccccccceeeeeccCCCcchhHhHHHHHHHHHHHHHHHHhhhhh----hHHHHHHHHHHHH
Q psy11547 183 SSILPWIFTGRILTGLGSGMVGAPSRIYTAECSQPHLRGMLSSLASFGVSLGVLFEYSLGAFL----SWDTVAAISTIIP 258 (587)
Q Consensus 183 ~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l----~wr~~f~~~~~~~ 258 (587)
.+++.|+++|++.+...+...+++.|+++++++++..+.......+|..++|.+++++ +||+.|++.+++.
T Consensus 96 -----~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~ 170 (401)
T PRK11043 96 -----QLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAIT 170 (401)
T ss_pred -----HHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 9999999999998888888888899999999999999999888899999999988877 9999999988888
Q ss_pred HHHHHHhcccCCCchHHHhcCCHHHHHHHHHHHhCCCcchHHHHhhHHHHHHHHHHHhhhhhhHhHHhhhcCCchHHHHH
Q psy11547 259 VLSIIAGCLMPESPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQGLYEFSKRQETQKSRNFKETLAAIVEPACLKPFVI 338 (587)
Q Consensus 259 ~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (587)
++..+..++++|+++. ++. +.+..+.++.++++.++...+.
T Consensus 171 ~~~~~~~~~~~~~~~~----~~~-----------------------------------~~~~~~~~~~~~~~~~~~~~~~ 211 (401)
T PRK11043 171 LLLILPTLRLKPSKKA----RKQ-----------------------------------SQDALTFKQLLKSKTYLGNVLI 211 (401)
T ss_pred HHHHHHHHHcCCCCCc----ccc-----------------------------------chHHHHHHHHHcChhHHHHHHH
Confidence 7776666555554310 000 0001123344455444332222
Q ss_pred HHHHHHHHHhccchhhHhcHHHHHHhcCCC-cchHHHHHHHHHHHHHHHHhHHHhhcccCCchhhHhhhHHHHHHHHHHH
Q psy11547 339 LMLYFLIYQFSGVNPVTFYAVNIFKDAGAH-VNNNLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLG 417 (587)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~ 417 (587)
..... ........+.|.++++.|++ ...+.......++.+++.++.+++.||+++|+.+....+..+++.+.+.
T Consensus 212 ~~~~~-----~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~ 286 (401)
T PRK11043 212 FAACS-----AAFFAWLTGSPFILEQMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIW 286 (401)
T ss_pred HHHHH-----HHHHHHHHHhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHH
Confidence 11111 11233455677777777777 3445555666778888999999999999998876665555555444333
Q ss_pred HHHHhccCCCCCCCcCccchhHHHHHHHHHHHHHhccccccceeeeeccCCCCchhhHHHHHHHHHHHHHHHHHHhhHHH
Q psy11547 418 LYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMF 497 (587)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l 497 (587)
..... . ....+.......+.+.+.+ ...+.......+..| +.++++.|+.++.+..++..++.+.|.+
T Consensus 287 ~~~~~-~---------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~l 354 (401)
T PRK11043 287 LASLL-S---------HPSLVPLLIPFCVMAAANG-AIYPIVVAQALRPFP-QATGKAAALQNTLQLGLCFLASLLVSAL 354 (401)
T ss_pred HHHHh-c---------cCcHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 22211 0 1122222222233333333 233444455556666 5689999999999999999999999988
Q ss_pred HHhhhhh
Q psy11547 498 QTHLTKE 504 (587)
Q Consensus 498 ~~~~g~~ 504 (587)
.+.....
T Consensus 355 ~~~~~~~ 361 (401)
T PRK11043 355 ISTPLLT 361 (401)
T ss_pred cCCChhH
Confidence 8754333
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.3e-28 Score=245.83 Aligned_cols=362 Identities=11% Similarity=-0.007 Sum_probs=248.4
Q ss_pred HHHHHHHHHhhhhhhccccccHHHHHhhhcCCCCCccCcchhHHHHHHHHHHHHHHHHhHHHhhhccchhHHHHHhhHHH
Q psy11547 89 LTLAVFANLGNVNTGMVFGFSAAATSQLISRDSPYRITSDESTWIASLSAIGTMVGCVLGGYMMDLVGRKMTLIITEVPT 168 (587)
Q Consensus 89 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~i~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~ 168 (587)
...++.+++..+..++......+.+|.++++ +|+++.+.|++.+.+.+++.+++++.|++.||+|||+++.++.+++
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~---~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~ 101 (438)
T PRK10133 25 IIPFALLCSLFFLWAVANNLNDILLPQFQQA---FTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLY 101 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 3344555566677788888899999999874 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH---HhcCCCCCCcchhhHHhhhhhhccccccccccceeeeeccCCCcchhHhHHHHHHHHHHHHHHHHhhhh-
Q psy11547 169 ILGWALI---ALAPSLPSSILPWIFTGRILTGLGSGMVGAPSRIYTAECSQPHLRGMLSSLASFGVSLGVLFEYSLGAF- 244 (587)
Q Consensus 169 ~i~~~~~---~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~- 244 (587)
+++++++ +++++++ .++++|+++|+|.|...+...+++.|+.++++|.+.+++.+..+.+|..+++.++..
T Consensus 102 ~~~~~l~~~~~~a~~~~-----~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l 176 (438)
T PRK10133 102 ALGAALFWPAAEIMNYT-----LFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSL 176 (438)
T ss_pred HHHHHHHHHHHhcCCHH-----HHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999886 4678888 999999999999999999999999998777777778999999999999998877542
Q ss_pred -----------------------------hhHHHHHHHHH-HHHHHHHHHhcc-cCCCchHHHhcCCHHHHHHHHHHHhC
Q psy11547 245 -----------------------------LSWDTVAAIST-IIPVLSIIAGCL-MPESPSWLLSQGRKDACRNSLRRLRA 293 (587)
Q Consensus 245 -----------------------------l~wr~~f~~~~-~~~~~~~~~~~~-~~esp~~~~~~~~~~~~~~~~~~~~~ 293 (587)
.+||++|+... +..++.+++.+. +||.+.. + +.++
T Consensus 177 ~~~~~~~~~~~~~~~l~~~~~~~w~~~~~~~w~~~f~~~~~v~~~~~~~~~~~~~p~~~~~---~-~~~~---------- 242 (438)
T PRK10133 177 ILSNVPHQSQDVLDKMTPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSD---N-HSDA---------- 242 (438)
T ss_pred HhcCCcccchhhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcc---c-cccc----------
Confidence 15666675433 333333332222 5543210 0 0000
Q ss_pred CCcchHHHHhhHHHHHHHHHHHhhhhhhHhHHhhhcCCchHHHHHHHHHHHHHHhccchhhHhcHHHH-HH-hcCCC-cc
Q psy11547 294 NNYDVEKEVQGLYEFSKRQETQKSRNFKETLAAIVEPACLKPFVILMLYFLIYQFSGVNPVTFYAVNI-FK-DAGAH-VN 370 (587)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~g~~-~~ 370 (587)
+.....+...+.++++.++...+..++... .......|.+.+ .+ ..|++ ..
T Consensus 243 ---------------------~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~~g~s~~~ 296 (438)
T PRK10133 243 ---------------------KQGSFSASLSRLARIRHWRWAVLAQFCYVG-----AQTACWSYLIRYAVEEIPGMTAGF 296 (438)
T ss_pred ---------------------cccchhhhHHHHHhCchHHHHHHHHHHHHH-----HHHHHHHHHHHHHhhhcCCCCHHH
Confidence 000011223345566654432222211111 122233345545 34 35777 45
Q ss_pred hHHHHHHHHHHHHHHHHhHHHhhcccCCchhhHhhhHHHHHHHHHHHHHHHhccCCCCCCCcCccchhHHHHHHHHHHHH
Q psy11547 371 NNLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAA 450 (587)
Q Consensus 371 ~~~~~~~~~~~~~i~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (587)
.+.......++.++++++++++.||+++|+++..+.++.++++++..+ . .. ......+.+++.+
T Consensus 297 ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~---~------------~~-~~~~~~~~l~glg 360 (438)
T PRK10133 297 AANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAF---A------------GG-HVGLIALTLCSAF 360 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH---c------------CC-hHHHHHHHHHHHH
Confidence 677788889999999999999999999999888876666555444332 1 11 1222233344444
Q ss_pred HhccccccceeeeeccCCCCchhhHHHHHHHHHHHHHHHHHHhhHHHHHhhh-hhhHHHHHHHHHHHH
Q psy11547 451 STIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLT-KEGTFLMYGCISLLG 517 (587)
Q Consensus 451 ~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g-~~~~~~~~~~~~~~~ 517 (587)
.+. ..|..++...+.+|++ .+.+.++.. ...+|+.++|.+.|.+.|..| .+..|++...+.+..
T Consensus 361 ~~~-i~P~~~s~a~~~~~~~-~~~as~l~~-~~~~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~~~~~ 425 (438)
T PRK10133 361 MSI-QYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVI 425 (438)
T ss_pred HHH-HHHHHHHHHHcccchh-hccchhHHh-HHhccchHHHHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence 443 3455567788887764 477777775 455788999999999999887 666776544444433
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.3e-28 Score=246.43 Aligned_cols=339 Identities=14% Similarity=0.159 Sum_probs=234.8
Q ss_pred hccccccHHHHHhhhcCCCCCccCcchhHHHHHHHHHHHHHHHHhHHHhhhccchhHHHHHhhHHHHHHHHHHHhcCCCC
Q psy11547 103 GMVFGFSAAATSQLISRDSPYRITSDESTWIASLSAIGTMVGCVLGGYMMDLVGRKMTLIITEVPTILGWALIALAPSLP 182 (587)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~i~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~ 182 (587)
........+.+|.+.++ +|.+..+.+++.+.+.++..+++++.|+++||+|||++++.+.++.+++.+++.++++++
T Consensus 16 ~~~~~~~~~~lp~~~~~---~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~~~~ 92 (392)
T PRK10473 16 PAGIDMYLVGLPRIAAD---LNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAETSS 92 (392)
T ss_pred HHHHHHHhhhHHHHHHH---hCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhCcHH
Confidence 33334444778888885 999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCcchhhHHhhhhhhccccccccccceeeeeccCCCcchhHhHHHHHHHHHHHHHHHHhhhhh----hHHHHHHHHHHHH
Q psy11547 183 SSILPWIFTGRILTGLGSGMVGAPSRIYTAECSQPHLRGMLSSLASFGVSLGVLFEYSLGAFL----SWDTVAAISTIIP 258 (587)
Q Consensus 183 ~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l----~wr~~f~~~~~~~ 258 (587)
.+++.|+++|++.+...+...+++.|++|+++|+++.++.+....+|.+++|.+++.+ +||+.|++.+++.
T Consensus 93 -----~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~ 167 (392)
T PRK10473 93 -----LFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMG 167 (392)
T ss_pred -----HHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHH
Confidence 8999999999999998999999999999999999999999999999999999998876 8999999988887
Q ss_pred HHHHHHhc-ccCCCchHHHhcCCHHHHHHHHHHHhCCCcchHHHHhhHHHHHHHHHHHhhhhhhHhHHhhhcCCchHHHH
Q psy11547 259 VLSIIAGC-LMPESPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQGLYEFSKRQETQKSRNFKETLAAIVEPACLKPFV 337 (587)
Q Consensus 259 ~~~~~~~~-~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (587)
++..++.+ ++||++... +++. ....+...+.++++.++....
T Consensus 168 ~i~~~~~~~~~~~~~~~~--~~~~-----------------------------------~~~~~~~~~~~~~~~~~~~~~ 210 (392)
T PRK10473 168 ILVLLLSLFILKETRPAR--APAA-----------------------------------SSKPRENSESLLNRFFLSRLV 210 (392)
T ss_pred HHHHHHHHHHcCCCCCcc--cCCc-----------------------------------cchHHHHHHHHhCHHHHHHHH
Confidence 77665543 477764210 0000 000011123344443333222
Q ss_pred HHHHHHHHHHhccchhhHhcHHHHH-HhcCCC-cchHHHHHHHHHHHHHHHHhHHHhhcccCCchhhHhhhHHHHHHHHH
Q psy11547 338 ILMLYFLIYQFSGVNPVTFYAVNIF-KDAGAH-VNNNLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTG 415 (587)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~-~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~ 415 (587)
........ ......+.|.++ ++.|++ ...+......+++.+++.++.+++.||+|+|+.+..+.++..++.+.
T Consensus 211 ~~~~~~~~-----~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~ 285 (392)
T PRK10473 211 ITTLSVTV-----ILTFVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGIT 285 (392)
T ss_pred HHHHHHHH-----HHHHHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 22111111 112333345444 456777 34456667788889999999999999999999988887777766665
Q ss_pred HHHHHHhccCCCCCCCcCccchhHHHHHHHHHHHHHhccccccceeeeeccCCCCchhhHHHHHHHHHHHHHHHHHHhhH
Q psy11547 416 LGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYN 495 (587)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g 495 (587)
+.... ..+.......+...+...+... ....+..|.+.|+ |.......++..+++.+.+
T Consensus 286 ~~~~~---------------~~~~~~~~~~l~~~g~~~~~~~---~~~~~~~~~~~~~---g~~~~~~~~~~~~g~~~~~ 344 (392)
T PRK10473 286 LALSP---------------SHAVSLFGITLICAGFSVGFGV---AMSQALGPFSLRA---GVASSTLGIAQVCGSSLWI 344 (392)
T ss_pred HHHHH---------------HHHHHHHHHHHHHHHHHHHhHH---HHHHHhccCcccc---cHHHHHHHHHHHHHHHHHH
Confidence 55421 1122222222222333322221 2233444544443 4445556677778888888
Q ss_pred HHHHhhhhhhHHHHHHH
Q psy11547 496 MFQTHLTKEGTFLMYGC 512 (587)
Q Consensus 496 ~l~~~~g~~~~~~~~~~ 512 (587)
.+.+..|+.....+.+.
T Consensus 345 ~l~~~~g~~~~~~~~~~ 361 (392)
T PRK10473 345 WLAAVLGISAWNMLIGI 361 (392)
T ss_pred HHHHHhccchhHHHHHH
Confidence 88888887654444443
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.8e-28 Score=241.02 Aligned_cols=362 Identities=11% Similarity=0.055 Sum_probs=240.6
Q ss_pred hhhhhccccccHHHHHhhhcCCCCCccCcchhHHHHHHHHHHHHHHHHhHHHhhhccchhHHHHHhhHHHHHHHHHHHhc
Q psy11547 99 NVNTGMVFGFSAAATSQLISRDSPYRITSDESTWIASLSAIGTMVGCVLGGYMMDLVGRKMTLIITEVPTILGWALIALA 178 (587)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~i~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~ 178 (587)
.++..+.........+.+.. +++.+..+.+++.+.+.+++.++.+++|+++||+|||++++++.+++++++++++++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~---~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~ 88 (393)
T PRK11195 12 QFFSALADNALLFAAIALLK---ELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFG 88 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHH
Confidence 33334433323344444455 388899999999999999999999999999999999999999999999998887775
Q ss_pred CCCCCCcchhhHHhhhhhhccccccccccceeeeeccCCCcchhHhHHHHHHHHHHHHHHHHhhhhh---hHHHHHHHHH
Q psy11547 179 PSLPSSILPWIFTGRILTGLGSGMVGAPSRIYTAECSQPHLRGMLSSLASFGVSLGVLFEYSLGAFL---SWDTVAAIST 255 (587)
Q Consensus 179 ~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l---~wr~~f~~~~ 255 (587)
.+ .++.|+++|++.+...|+..+++.|++|+++|++++++.+....+|.++||.+++.+ .|+..+.+.+
T Consensus 89 ~~--------~~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~~~~~~~~i~~ 160 (393)
T PRK11195 89 IH--------PLLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADPHAEAALAVCA 160 (393)
T ss_pred HH--------HHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43 367899999999999999999999999999999999999999999999999999988 5566666555
Q ss_pred HHHHHHHHHhcccCCCchHHHhcCCHHHHHHHHHHHhCCCcchHHHHhhHHHHHHHHHHHhhhhhhHhHHhhhcCCchHH
Q psy11547 256 IIPVLSIIAGCLMPESPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQGLYEFSKRQETQKSRNFKETLAAIVEPACLKP 335 (587)
Q Consensus 256 ~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (587)
...++..+..+.+||+|.+...++. +. .... .+ ..+.....++++..+..
T Consensus 161 ~~~~~~~~~~~~l~~~~~~~~~~~~-~~-~~~~-----------------~~-----------~~~~~~~l~~~~~~~~~ 210 (393)
T PRK11195 161 LIYLLAALFNLFIPRLGARRPGQSW-NP-IALL-----------------RD-----------FFHACRVLWRDKLGRFS 210 (393)
T ss_pred HHHHHHHHHHhcCCCCcccccccCC-CH-HHHH-----------------HH-----------HHHHHHHHHhCchhHHH
Confidence 5544444444558886532110000 00 0000 00 00112233444544332
Q ss_pred HHHHHHHHHHHHhccchhhHhcHHHHHHh-cCCC-cchHHHHHHHHHHHHHHHHhHHHhhcccCCchhhHhhhHHHHHHH
Q psy11547 336 FVILMLYFLIYQFSGVNPVTFYAVNIFKD-AGAH-VNNNLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSM 413 (587)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~-~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~~~~~~~~~~~~~~~~ 413 (587)
.....+.+.+ .....+..+.+.++ .|.+ .+.+......+++.++++++.+++.||.++++.+..+.. .++..
T Consensus 211 ~~~~~~~~~~-----~~~~~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~~-~~~~~ 284 (393)
T PRK11195 211 LAGTTLFWGA-----GATLRFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGIL-MGLVV 284 (393)
T ss_pred HHHHHHHHHH-----HHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHH-HHHHH
Confidence 2222222111 12233333444443 5666 456677788888999999999999999988877766643 33332
Q ss_pred HHHHHHHHhccCCCCCCCcCccchhHHHHHHHHHHHHHhccccccceeeeeccCCCCc-hhhHHHHHHHHHHHHHHHHHH
Q psy11547 414 TGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKV-RGIVGGLTTCACHFFIFLTVK 492 (587)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-r~~~~g~~~~~~~~g~~i~~~ 492 (587)
+.+.. . .+.+.......+.+.+.+....+. .+.+.+..|++. +|++.++.+...+++..++..
T Consensus 285 ~~~~~---~------------~~~~~~~~~~~~~G~~~g~~~~~~-~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~ 348 (393)
T PRK11195 285 LLMAL---Q------------HSLLPAYPLLILIGALGGFFVVPM-NALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLG 348 (393)
T ss_pred HHHHH---H------------hHHHHHHHHHHHHHHhhhhhhhhH-HHHHHhhCcccccchhHHHHHhHHHHHHHHHHHH
Confidence 22222 1 122323333334444444333333 466777766654 799999999999999999999
Q ss_pred hhHHHHHhhhhhhHHHHHHHHHHHHHHHhhee
Q psy11547 493 SYNMFQTHLTKEGTFLMYGCISLLGTIFFYVY 524 (587)
Q Consensus 493 ~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 524 (587)
+++.+ +..|....+.+.+...+++..+.+.+
T Consensus 349 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (393)
T PRK11195 349 LYSLL-VKLGVPVVAVIVGFGLLVALAMALLW 379 (393)
T ss_pred HHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 98854 67788877777666666555554444
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.1e-29 Score=249.45 Aligned_cols=341 Identities=23% Similarity=0.315 Sum_probs=244.3
Q ss_pred HHhhhhhhccccccHHHHH-hhhcCCCCCccCcchhHHHHHHHHHHHHHHHHhHHHhhhccchhHHHHHhhHHHHHHHHH
Q psy11547 96 NLGNVNTGMVFGFSAAATS-QLISRDSPYRITSDESTWIASLSAIGTMVGCVLGGYMMDLVGRKMTLIITEVPTILGWAL 174 (587)
Q Consensus 96 ~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~g~i~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~ 174 (587)
+++.+...+......+.+| .+.++ +|.+..+.+++.+++.++..+++++.|+++||+|||++++++.++.+++.++
T Consensus 2 ~l~~~~~~~~~~~~~~~~~~~~~~~---~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~ 78 (352)
T PF07690_consen 2 FLAFFLSGFGFSIISPALPLYLAEE---LGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLL 78 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHCC---STTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHc---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHH
Confidence 3445556666777788888 67674 9999999999999999999999999999999999999999999999999777
Q ss_pred HHhcCCCCCCcchhhHHhhhhhhccccccccccceeeeeccCCCcchhHhHHHHHHHHHHHHHHHHhhhhh----hHHHH
Q psy11547 175 IALAPSLPSSILPWIFTGRILTGLGSGMVGAPSRIYTAECSQPHLRGMLSSLASFGVSLGVLFEYSLGAFL----SWDTV 250 (587)
Q Consensus 175 ~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l----~wr~~ 250 (587)
..++++++ .++++|++.|++.+...+...+++.|++|+++|++++++...+..+|.++++.+++.+ +||+.
T Consensus 79 ~~~~~~~~-----~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~ 153 (352)
T PF07690_consen 79 LAFASNFW-----LLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWA 153 (352)
T ss_dssp HHHHCCHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCH
T ss_pred hhhhhhHH-----HHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccccccc
Confidence 77778887 8999999999999999999999999999999999999999999999999999999988 89999
Q ss_pred HHHHHHHHHHHHHHh-cccCCCchHHHhcCCHHHHHHHHHHHhCCCcchHHHHhhHHHHHHHHHHHhhhhhhH-hHHhhh
Q psy11547 251 AAISTIIPVLSIIAG-CLMPESPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQGLYEFSKRQETQKSRNFKE-TLAAIV 328 (587)
Q Consensus 251 f~~~~~~~~~~~~~~-~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 328 (587)
|++.+++.++..++. .+++++++....+.+.++. .+.+.+..+ .....+
T Consensus 154 ~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~ 204 (352)
T PF07690_consen 154 FLISAILSLIAAILFILFLPEPPPPRERESPKESE-----------------------------SKKPKPLKPGFKSLFK 204 (352)
T ss_dssp HHHHHHHHHHHHHHHHCCC---STTTT--SSTTTT-------------------------------HHHCCCH-CTHHHH
T ss_pred cccccchhhhhhhhHhhhhhhcccccccccccccc-----------------------------cccccccccccccccc
Confidence 999999998887643 3354443211111100000 001111111 333344
Q ss_pred cCCchHHHHHHHHHHHHHHhccchhhHhcHHHH-HHhcCCC--cchHHHHHHHHHHHHHHHHhHHHhhcccCCchhhHhh
Q psy11547 329 EPACLKPFVILMLYFLIYQFSGVNPVTFYAVNI-FKDAGAH--VNNNLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFIS 405 (587)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~--~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~~~~~~~~ 405 (587)
++..+ ..+...... .........+.|.+ .+..+.+ .+.+....+..+.++++.++.+++.||+++++.....
T Consensus 205 ~~~~~-~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 279 (352)
T PF07690_consen 205 NPVLW-ILLIAFFLF----FFVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIA 279 (352)
T ss_dssp HHCCH-HHHHHHHHH----HHHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cchhh-hhhhhhhHH----HHHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 44443 111111111 11233466677776 4556666 3445567778888888899999999999998777766
Q ss_pred hHHHHHHHHHHHHHHHhccCCCCCCCcCccchhHHHHHHHHHHHHHhccccccceeeeeccCCCCchhhHHHHHHHHHHH
Q psy11547 406 SIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHF 485 (587)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~ 485 (587)
.....+..+.+...... ...........+.+.+.+. ..+...+++.+.+|++.+|++.|+.++..++
T Consensus 280 ~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~ 346 (352)
T PF07690_consen 280 ILLLILGALGLLLLPFS------------SSPVWLIIALFLIGFGFGI-VFPILFSLIQELVPPEYRGTAFGLFNSIGSL 346 (352)
T ss_dssp HHHHHHHHHHHCCSHHH------------CHHHHHHHHHHHHHHHHHH-HCHHHHHHHHCCCHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh------------hhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 66665555554432221 1223333344444443333 3455568999999999999999999999999
Q ss_pred HHHHHH
Q psy11547 486 FIFLTV 491 (587)
Q Consensus 486 g~~i~~ 491 (587)
+..++|
T Consensus 347 ~~~igP 352 (352)
T PF07690_consen 347 GGIIGP 352 (352)
T ss_dssp HHHHHH
T ss_pred HHHHCC
Confidence 999887
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.8e-28 Score=243.78 Aligned_cols=354 Identities=11% Similarity=0.066 Sum_probs=244.7
Q ss_pred hhccccccHHHHHhhhcCCCCCccCcchhHHHHHHHHHHHHHHHHhHHHhhhccchhHHHHHhhHHHHHHHHHHHhcCCC
Q psy11547 102 TGMVFGFSAAATSQLISRDSPYRITSDESTWIASLSAIGTMVGCVLGGYMMDLVGRKMTLIITEVPTILGWALIALAPSL 181 (587)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~i~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~ 181 (587)
.....+...+.+|.+..+ ++|++..+.|++.+.+.+++.+++++.|+++||+|||++++++.++.+++.++.++++++
T Consensus 19 ~~~g~~~~~~~l~~~l~~--~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~~~~ 96 (395)
T PRK10054 19 LTIGRGATLPFMTIYLSR--QYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLVNNV 96 (395)
T ss_pred HHHHHHHHHHHHHHHHHH--HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHhHH
Confidence 344444445666655433 499999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCcchhhHHhhhhhhccccccccccceeeeeccCCCcchhHhHHHHHHHHHHHHHHHHhhhhh---hHHHHHHHHHHHH
Q psy11547 182 PSSILPWIFTGRILTGLGSGMVGAPSRIYTAECSQPHLRGMLSSLASFGVSLGVLFEYSLGAFL---SWDTVAAISTIIP 258 (587)
Q Consensus 182 ~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l---~wr~~f~~~~~~~ 258 (587)
+ .++++|++.|.+.+...+...++..|.+|+++|++++++.....++|.+++|.+++++ +|+..|++.+++.
T Consensus 97 ~-----~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~~g~~~~f~~~~~~~ 171 (395)
T PRK10054 97 T-----LVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVMQSINLPFWLAAICS 171 (395)
T ss_pred H-----HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence 8 8888999999887877888889999999999999999999999999999999999987 8999999988887
Q ss_pred HHHHHHhcc-cCCCchHHHhcCCHHHHHHHHHHHhCCCcchHHHHhhHHHHHHHHHHHhhhhhhHhHHhhhcCCchHHHH
Q psy11547 259 VLSIIAGCL-MPESPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQGLYEFSKRQETQKSRNFKETLAAIVEPACLKPFV 337 (587)
Q Consensus 259 ~~~~~~~~~-~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (587)
++.+++..+ +||+++. ++.++ + +..+..+.++++.++...+
T Consensus 172 ~i~~i~~~~~~~~~~~~----~~~~~--------------------------------~--~~~~~~~~~~~~~~~~~~~ 213 (395)
T PRK10054 172 AFPLVFIQIWVQRSEKA----IATET--------------------------------G--SVWSPSVLLQDKALLWFTC 213 (395)
T ss_pred HHHHHHHHHHHhccccc----cccch--------------------------------h--hhhhhhhhccCceehHHHH
Confidence 776554433 5554210 00000 0 0011133455555544333
Q ss_pred HHHHHHHHHHhccchhhHhcHHHHHH---hcCCCc-chHHHHHHHHHHHHHHHHhHHHhhcccCCchhhHhhhHHHHHHH
Q psy11547 338 ILMLYFLIYQFSGVNPVTFYAVNIFK---DAGAHV-NNNLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSM 413 (587)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~g~~~-~~~~~~~~~~~~~~i~~~~~g~l~d~~g~~~~~~~~~~~~~~~~ 413 (587)
..++.... ......+.+.+.. +.+.+. ..+.......+..+......+++.||.++|+.+..+.++..++.
T Consensus 214 ~~~l~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~ 288 (395)
T PRK10054 214 SGFLASFV-----SGAFASCISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGL 288 (395)
T ss_pred HHHHHHHH-----HHHhhhhHHHHHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHH
Confidence 32222221 1112223333332 222321 22334444445555556788899999999998888877776666
Q ss_pred HHHHHHHHhccCCCCCCCcCccchhHHHHHHHHHHHHHhccccccceeeeeccCCCCchhhHHHHHHHHHHHHHHHHHHh
Q psy11547 414 TGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKS 493 (587)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~~~~ 493 (587)
+.+... ..+.+...+...+++.+. ....|...+.+.+..|++.++++.+..+ ...+|..+||.+
T Consensus 289 ~~~~~~--------------~~~~~~~~~~~~~~~~g~-~~~~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~ 352 (395)
T PRK10054 289 VGFIFS--------------GNSLLLWGMSAAVFTVGE-IIYAPGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLV 352 (395)
T ss_pred HHHHHc--------------chHHHHHHHHHHHHHHHH-HHHHhhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHH
Confidence 555431 012222233333333332 2334455577888999999999988754 677899999999
Q ss_pred hHHHHHhhhhhhHHHHHHHHHHHHHHHh
Q psy11547 494 YNMFQTHLTKEGTFLMYGCISLLGTIFF 521 (587)
Q Consensus 494 ~g~l~~~~g~~~~~~~~~~~~~~~~~~~ 521 (587)
+|.+.|+.|+...|++.+.+..+..++.
T Consensus 353 ~G~l~~~~g~~~~~~~~~~~~~~~~~~~ 380 (395)
T PRK10054 353 SGVILTTLPPWSLFVILALAIVAAWLLM 380 (395)
T ss_pred HHHHHHHcChhhHHHHHHHHHHHHHHHH
Confidence 9999999998878877666655555444
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1e-27 Score=241.06 Aligned_cols=345 Identities=16% Similarity=0.137 Sum_probs=236.7
Q ss_pred ccHHHHHhh-hcCCCCCccCcchhHHHHHHHHHHHHHHHHhHHHhhhccchhHHHHHhhHHHHHHHHHHHhcCCCCCCcc
Q psy11547 108 FSAAATSQL-ISRDSPYRITSDESTWIASLSAIGTMVGCVLGGYMMDLVGRKMTLIITEVPTILGWALIALAPSLPSSIL 186 (587)
Q Consensus 108 ~~~~~~~~~-~~~~~~~~~s~~~~g~i~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~ 186 (587)
...+.+|.. .+ ++|+|..+.|++.+.+.++..+.++++|+++||+|||+++..+.++.+++.+++.++++++
T Consensus 28 ~~~~~~~~~~~~---~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~---- 100 (400)
T PRK11646 28 VVFPLISIRFVD---QLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAHEPW---- 100 (400)
T ss_pred HHHHHHHHHHHH---HhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhccHH----
Confidence 334555544 34 4899999999999999999999999999999999999999999999999999999999888
Q ss_pred hhhHHhhhhhhccccccccccceeeeeccCCCcchhHhHHHHHHHHHHHHHHHHhhhhh---hHHHHHHHHHHHHHHHHH
Q psy11547 187 PWIFTGRILTGLGSGMVGAPSRIYTAECSQPHLRGMLSSLASFGVSLGVLFEYSLGAFL---SWDTVAAISTIIPVLSII 263 (587)
Q Consensus 187 ~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l---~wr~~f~~~~~~~~~~~~ 263 (587)
.+++.|+++|++.+...+...+++.|++|+++|++++++......+|..+||.+++++ +||+.|++.+++.++..+
T Consensus 101 -~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~~~g~~~~f~~~~~~~~~~~i 179 (400)
T PRK11646 101 -LLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLLQYDFRLVCATGAVLFVLAAA 179 (400)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 8999999999999888899999999999999999999999999999999999999988 999999998877766544
Q ss_pred Hh-cccCCCchHHHhcCCHHHHHHHHHHHhCCCcchHHHHhhHHHHHHHHHHHhhhhhhHhHHhhhcCCchHHHHHHHHH
Q psy11547 264 AG-CLMPESPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQGLYEFSKRQETQKSRNFKETLAAIVEPACLKPFVILMLY 342 (587)
Q Consensus 264 ~~-~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (587)
+. +++||.+. ++. ++...+...+.++++.++...+.....
T Consensus 180 ~~~~~~~~~~~-----~~~----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (400)
T PRK11646 180 FNAWLLPAYKL-----STV----------------------------------RTPVREGMTRVLRDKRFVTYVLTLTGY 220 (400)
T ss_pred HHHHhCCcccc-----ccc----------------------------------chhhHHHHHHHHcCchHHHHHHHHHHH
Confidence 43 33555210 000 000011233444555433221111111
Q ss_pred HHHHHhccchhhHhcHHHHHHhcCCC-cchHHHHHHHHHHHHHHHHhHHHhh-cccCCchhhHhhhHHHHHHHHHHHHHH
Q psy11547 343 FLIYQFSGVNPVTFYAVNIFKDAGAH-VNNNLAAVIMGIVRLIFTIASCIMM-KKMGRRSLTFISSIGCGVSMTGLGLYI 420 (587)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~i~~~~~g~l~-d~~g~~~~~~~~~~~~~~~~~~~~~~~ 420 (587)
.. .......+.|.+.++.+.+ ...+......++....+....+++. ||++.++.+..+.++.+++.+++..
T Consensus 221 ~~-----~~~~~~~~~p~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~-- 293 (400)
T PRK11646 221 YM-----LAVQVMLMLPIMVNDIAGSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGM-- 293 (400)
T ss_pred HH-----HHHHHHHhhhhhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHH--
Confidence 11 1112344667777775444 3344555555555554444445554 5566566666666666666554443
Q ss_pred HhccCCCCCCCcCccchhHHHHHHHHHHHHHhccccccceeeeeccCCCCchhhHHHHHHHHHHHHHHHHHHhhHHHHHh
Q psy11547 421 FATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTH 500 (587)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~ 500 (587)
.+..+.......+++.+.. ...|...+++.+..|++.||++.|+.+....+|..++|.+.|.+.|.
T Consensus 294 -------------~~~~~~~~~~~~l~~~g~~-~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~ 359 (400)
T PRK11646 294 -------------VSNLQQLFTLICLFYIGSI-IAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDL 359 (400)
T ss_pred -------------hhhHHHHHHHHHHHHHHHH-HHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHH
Confidence 1122222222233333333 22344457888999999999999999999999999999999999988
Q ss_pred hh----hhhHHHHHHHHHHHHHHH
Q psy11547 501 LT----KEGTFLMYGCISLLGTIF 520 (587)
Q Consensus 501 ~g----~~~~~~~~~~~~~~~~~~ 520 (587)
.+ ....+++.+++++++.+.
T Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~ 383 (400)
T PRK11646 360 GKALNQPELPWMMLGIIGLITLLA 383 (400)
T ss_pred HhhcCCcchHHHHHHHHHHHHHHH
Confidence 53 234455545555544443
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.6e-27 Score=245.07 Aligned_cols=367 Identities=14% Similarity=0.134 Sum_probs=249.9
Q ss_pred HHhhhhhhccccccHHHHHhhhcCCCCCccCcchhHHHHHHHHHHHHHHHHhHHHhhhcc-----chhHH-HHHhhHHHH
Q psy11547 96 NLGNVNTGMVFGFSAAATSQLISRDSPYRITSDESTWIASLSAIGTMVGCVLGGYMMDLV-----GRKMT-LIITEVPTI 169 (587)
Q Consensus 96 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~i~s~~~l~~~i~~~~~g~l~dr~-----Grr~~-l~~~~~~~~ 169 (587)
.+..+..|.......+.+|....+ .|.+..++|.+ +.....+ ++.+++|+++||+ |||+. ++.+.++.+
T Consensus 18 ~~l~~~~gl~~~~~~~~l~~~l~~---~g~~~~~ig~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~ 92 (491)
T PRK11010 18 LILGFASGLPLALTSGTLQAWMTV---ENIDLKTIGFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLL 92 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh---CCCCHHHHHHH-HHHHHHH-HHHHHHHHHHHcccccCCCCchHHHHHHHHHHH
Confidence 333455677777888889988875 78899999987 4444444 5889999999999 99875 778888888
Q ss_pred HHHHHHHhcC---CCCCCcchhhHHhhhhhhccccccccccceeeeeccCCCcchhHhHHHHHHHHHHHHHHHHhhhhh-
Q psy11547 170 LGWALIALAP---SLPSSILPWIFTGRILTGLGSGMVGAPSRIYTAECSQPHLRGMLSSLASFGVSLGVLFEYSLGAFL- 245 (587)
Q Consensus 170 i~~~~~~~~~---~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l- 245 (587)
++.+++++.+ +++ .+.+.+++.|++.+...+...+++.|++|+++|+++.++...+..+|.++++.++.++
T Consensus 93 ~~~~~~a~~~~~~~l~-----~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~ 167 (491)
T PRK11010 93 VAIAAMGFLEPGTQLR-----WLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLA 167 (491)
T ss_pred HHHHHHHHcCCcchHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888887764 444 7888999999999999999999999999999999999999999999999999877765
Q ss_pred ----hHHHHHHHHHHHHHHHHHHhcccCCCchHHHhcCCHHHHHHHHHHHhCCCcchHHHHhhHHHHHHHHHHHhhhhhh
Q psy11547 246 ----SWDTVAAISTIIPVLSIIAGCLMPESPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQGLYEFSKRQETQKSRNFK 321 (587)
Q Consensus 246 ----~wr~~f~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (587)
|||..|++.+++.++..+..+++||+++.. ++.++. ++....
T Consensus 168 ~~~~GWr~~f~i~a~l~ll~~l~~~~~~e~~~~~---~~~~~~-------------------------------~~~~~~ 213 (491)
T PRK11010 168 DRYLGWQGMYWLMAALLIPCIIATLLAPEPTDTI---PVPKTL-------------------------------EQAVVA 213 (491)
T ss_pred hcccCHHHHHHHHHHHHHHHHHHHHhcCCCcccc---ccccch-------------------------------hhhHHH
Confidence 799999999988877766666678865310 000000 000011
Q ss_pred HhHHhhhcCCchHHHHHHHHHHHHHHhccchhhHhcHHHH-HHhcCCC-cchHHHH-HHHHHHHHHHHHhHHHhhcccCC
Q psy11547 322 ETLAAIVEPACLKPFVILMLYFLIYQFSGVNPVTFYAVNI-FKDAGAH-VNNNLAA-VIMGIVRLIFTIASCIMMKKMGR 398 (587)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~-~~~~~~~-~~~~~~~~i~~~~~g~l~d~~g~ 398 (587)
+..+.++++..+......+... .. ......+.+.+ .++.|++ .+.+... ....++.+++.+++|++.||+++
T Consensus 214 ~l~~~~~~~~~~~~ll~~~l~~----~~-~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~ 288 (491)
T PRK11010 214 PLRDFFGRNNAWLILLLIVLYK----LG-DAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSL 288 (491)
T ss_pred HHHHHHcCcCHHHHHHHHHHHH----HH-HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 2334444444332222221111 11 11222333444 4557887 3444544 34557889999999999999999
Q ss_pred chhhHhhhHHHHHHHHHHHHHHHhccCCCCCCCcCccchhHHHHHHHHHHHHHhccccccceeeeeccCCCCchhhHHHH
Q psy11547 399 RSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGL 478 (587)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~ 478 (587)
|+.+.++.++.++..+.+...... ..+.+.......+.....+.+... .+++..+..+++.+++..|+
T Consensus 289 ~~~l~i~~~l~~l~~l~~~~l~~~-----------~~~~~~l~~~~~l~~~~~g~~~~~-~~a~~~~l~~~~~~~t~~gl 356 (491)
T PRK11010 289 FRALMIFGILQGVSNAGYWLLSIT-----------DKNLYSMGAAVFFENLCGGMGTAA-FVALLMTLCNKSFSATQFAL 356 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc-----------cccHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHcCCCCcHHHHHH
Confidence 887776665555544333221111 111222221222212222222222 24777888899999999999
Q ss_pred HHHHHHHHHHHHHHhhHHHHHhhhhhhHHHHHHHHHHHHHHHhhe
Q psy11547 479 TTCACHFFIFLTVKSYNMFQTHLTKEGTFLMYGCISLLGTIFFYV 523 (587)
Q Consensus 479 ~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 523 (587)
.+....+|..+++.+.|.+.|..||...|.+.+++++++.+..+.
T Consensus 357 ~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~ 401 (491)
T PRK11010 357 LSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLV 401 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999988888888877777665543
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.9e-27 Score=238.96 Aligned_cols=350 Identities=9% Similarity=-0.009 Sum_probs=249.1
Q ss_pred HHHHHHhhhhhhccccccHHHHHhhhcCCCCCccCcchhHHHHHHHHHHHHHHHHhHHHhhhccchhHHHHHhhHHHHHH
Q psy11547 92 AVFANLGNVNTGMVFGFSAAATSQLISRDSPYRITSDESTWIASLSAIGTMVGCVLGGYMMDLVGRKMTLIITEVPTILG 171 (587)
Q Consensus 92 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~i~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~ 171 (587)
.+++++..+..|+..+..++.+|.++++ +|++..+.|++.+.+.+++.+++++.|++.||+|||+++.++.++++++
T Consensus 5 ~~~~~~~f~~~G~~~~~~~~l~~~~~~~---~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g 81 (410)
T TIGR00885 5 FALITSLFALWGFANDITNPMVPQFQQA---FTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALG 81 (410)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHH---hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHH
Confidence 3455667777888889999999999885 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHHh---cCCCCCCcchhhHHhhhhhhccccccccccceeeeeccCCCcchhHhHHHHHHHHHHHHHHHHhhhhh---
Q psy11547 172 WALIAL---APSLPSSILPWIFTGRILTGLGSGMVGAPSRIYTAECSQPHLRGMLSSLASFGVSLGVLFEYSLGAFL--- 245 (587)
Q Consensus 172 ~~~~~~---~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l--- 245 (587)
.+++.. .++++ .+++.|++.|+|.|...+....++.++.|+++|++.+++.+...++|..+++.++..+
T Consensus 82 ~~l~~~~~~~~~~~-----~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~ 156 (410)
T TIGR00885 82 AFLFWPAAEIMNYT-----LFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILS 156 (410)
T ss_pred HHHHHHHHhhccHH-----HHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 988654 35677 8999999999999999999999999999999999999999999999999999887654
Q ss_pred ---------------------------hHHHHHHHHHHHHHHHHHHhcc--cCCCchHHHhcCCHHHHHHHHHHHhCCCc
Q psy11547 246 ---------------------------SWDTVAAISTIIPVLSIIAGCL--MPESPSWLLSQGRKDACRNSLRRLRANNY 296 (587)
Q Consensus 246 ---------------------------~wr~~f~~~~~~~~~~~~~~~~--~~esp~~~~~~~~~~~~~~~~~~~~~~~~ 296 (587)
+||++|++.+++.++..++..+ .||.++ ++.+
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~~~~~p~~~~-----~~~~-------------- 217 (410)
T TIGR00885 157 NLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIMLTKMPALNH-----SDAK-------------- 217 (410)
T ss_pred CCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc-----cccc--------------
Confidence 3999999988877766555433 444211 0000
Q ss_pred chHHHHhhHHHHHHHHHHHhhhhhhHhHHhhhcCCchHHHHHHHHHHHHHHhccchhhHhcHHHHHHhcCCCcc---hHH
Q psy11547 297 DVEKEVQGLYEFSKRQETQKSRNFKETLAAIVEPACLKPFVILMLYFLIYQFSGVNPVTFYAVNIFKDAGAHVN---NNL 373 (587)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~---~~~ 373 (587)
+........+.++++..+...+..++ +. . .......+.+.+.++.+.+.+ ...
T Consensus 218 -------------------~~~~~~~~~~~~~~~~~~~~~l~~f~-yv---g-~e~~~~s~l~~y~~~~~~~~~~~~a~~ 273 (410)
T TIGR00885 218 -------------------QISFSASLSRLARIRHYREGVIAQFF-YV---G-VQIMCWTFIIQYAVRLIPGMTAGFAAN 273 (410)
T ss_pred -------------------cccchhhHHHHHhChhHHHHHHHHHH-HH---H-HHHHHHHHHHHHHhhccCCCCHHHHHH
Confidence 00000112233444443332221111 11 1 122334566666665433312 223
Q ss_pred HHHHHHHHHHHHHHhHHHhhcccCCchhhHhhhHHHHHHHHHHHHHHHhccCCCCCCCcCccchhHHHHHHHHHHHHHhc
Q psy11547 374 AAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTI 453 (587)
Q Consensus 374 ~~~~~~~~~~i~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (587)
..........+|+++++++.||+++|+++.++.++.++++++... .. .......+.+.+.+.+.
T Consensus 274 ~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~---------------~~-~~~~~~~l~~~glf~s~ 337 (410)
T TIGR00885 274 YNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIF---------------AG-GHVGLYCLTLCSAFMSL 337 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH---------------cC-ChHHHHHHHHHHHHHHH
Confidence 444455678899999999999999999888877777766666554 11 12233344444444444
Q ss_pred cccccceeeeeccCCCCchhhHHHHHHHHHHHHHHHHHHhhHHHHHhh------hhhhHHHHHH
Q psy11547 454 GYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHL------TKEGTFLMYG 511 (587)
Q Consensus 454 ~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~~------g~~~~~~~~~ 511 (587)
.+ |..++...+..+++.+..+.++.... +|++++|.+.|.+.|.. +....|++..
T Consensus 338 ~f-p~i~sl~~~~~g~~~~~~s~~l~~~~--~Gga~~p~l~G~~~d~~~~~~~~~~~~~~~~~~ 398 (410)
T TIGR00885 338 MF-PTIYGIALKGLGQDTKYGAAGLVMAI--IGGGIVPPLQGFIIDMKEIAAAPAVNTSFILPL 398 (410)
T ss_pred HH-HHHHHHHHhhhhhhhhhhHHHHHHHH--hccchHHHHHHHHHHHhcccccCccchHHHHHH
Confidence 44 66678888988877755455554443 99999999999999954 3555666533
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.9e-27 Score=237.44 Aligned_cols=329 Identities=13% Similarity=0.148 Sum_probs=227.3
Q ss_pred ccccHHHHHhhhcCCCCCccCcchhHHHHHHHHHHHHHHHHhHHHhhhccchhHHHHHhhHHHHHHHHHHHhcCCCCCCc
Q psy11547 106 FGFSAAATSQLISRDSPYRITSDESTWIASLSAIGTMVGCVLGGYMMDLVGRKMTLIITEVPTILGWALIALAPSLPSSI 185 (587)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~s~~~~g~i~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~ 185 (587)
.....|.+|.+.++ +|++..+.+++.+++.++..++.+++|+++||+|||+++..+.++.+++.+++.++++++
T Consensus 7 ~~~~~p~~~~~~~~---~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~--- 80 (377)
T PRK11102 7 IDMYLPALPVIAAD---FGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTID--- 80 (377)
T ss_pred HHHHhccHHHHHHH---hCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHH---
Confidence 34455788888875 999999999999999999999999999999999999999999999999999999999998
Q ss_pred chhhHHhhhhhhccccccccccceeeeeccCCCcchhHhHHHHHHHHHHHHHHHHhhhhh----hHHHHHHHHHHHHHHH
Q psy11547 186 LPWIFTGRILTGLGSGMVGAPSRIYTAECSQPHLRGMLSSLASFGVSLGVLFEYSLGAFL----SWDTVAAISTIIPVLS 261 (587)
Q Consensus 186 ~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l----~wr~~f~~~~~~~~~~ 261 (587)
.+++.|+++|++.+...+...+++.|++|+++|++++++...+..+|..+++.+++.+ +||+.|++.+++.++.
T Consensus 81 --~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 158 (377)
T PRK11102 81 --QLIYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILA 158 (377)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999998877 8999999988887776
Q ss_pred HHHh-cccCCCchHHHhcCCHHHHHHHHHHHhCCCcchHHHHhhHHHHHHHHHHHhhhhhhHhHHhhhcCCchHHHHHHH
Q psy11547 262 IIAG-CLMPESPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQGLYEFSKRQETQKSRNFKETLAAIVEPACLKPFVILM 340 (587)
Q Consensus 262 ~~~~-~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (587)
.++. +++||+++.. ++.+ .+ .+...+...+.++++..+...+
T Consensus 159 ~~~~~~~~~~~~~~~---~~~~-------------~~------------------~~~~~~~~~~~~~~~~~~~~~~--- 201 (377)
T PRK11102 159 AALVFFFIPETLPKE---RRQP-------------FH------------------LRTTIRNFASLFRHKRVLGYML--- 201 (377)
T ss_pred HHHHHHhCCccCccc---ccCC-------------CC------------------hHHHHHHHHHHHcChHHHHHHH---
Confidence 5554 4477754210 0000 00 0001122333444443322111
Q ss_pred HHHHHHHhccchhhHhcHHHHH-HhcCCC-cchHHHHHHHHHHHHHHHHhHHHhhcccCCchhhHhhhHHHHHHHHHHHH
Q psy11547 341 LYFLIYQFSGVNPVTFYAVNIF-KDAGAH-VNNNLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGL 418 (587)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~-~~~g~~-~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~ 418 (587)
..+..+.+......+.|.++ +..|.+ .+.+.......+..+++.++.+++.||+|+|+.+..+..+..+..+.+..
T Consensus 202 --~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~ 279 (377)
T PRK11102 202 --ASGFSFAGMFSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVV 279 (377)
T ss_pred --HHHHHHHHHHHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Confidence 11112222333444445444 446777 45567777888889999999999999999999888777654443333322
Q ss_pred HHHhccCCCCCCCcCccchhHHHHHHHHHHHHHhccccccceeeeeccCCCCchhhHHHHHHHHHH-HHHHHHHHhh
Q psy11547 419 YIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACH-FFIFLTVKSY 494 (587)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~-~g~~i~~~~~ 494 (587)
.... ....+........+..+.... .+....++.|..| +.++++.++.+.... ++..+++.+.
T Consensus 280 ~~~~-----------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~g~~~~ 343 (377)
T PRK11102 280 SALL-----------DLGFWALVVGVAAFVGCVSMI-SSNAMAVILDEFP-HMAGTASSLAGTLRFGIGAIVGALLS 343 (377)
T ss_pred HHHH-----------hhhHHHHHHHHHHHHHHHHHh-hHHHHHHHhcccc-ccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 2111 111222222222222222222 2222345667666 778999998777644 4555555443
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-26 Score=235.71 Aligned_cols=364 Identities=14% Similarity=0.092 Sum_probs=226.6
Q ss_pred cccHHHHHhhhcCCCCCccCcchhHHHHHHHHHHHHHHHHhHHHhhhccchhHHHHHhhHHHHHHHHHHH---hcCCCCC
Q psy11547 107 GFSAAATSQLISRDSPYRITSDESTWIASLSAIGTMVGCVLGGYMMDLVGRKMTLIITEVPTILGWALIA---LAPSLPS 183 (587)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~s~~~~g~i~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~---~~~~~~~ 183 (587)
+...+.+|.+..+ ++|++..+.|++.+++.++..++++++|+++||+|||++++++..+.+++..... .++....
T Consensus 27 ~~~~~~~~~~l~~--~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (420)
T PRK09528 27 SSWFSFFPIWLHD--INGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFFIYVFAPLLQY 104 (420)
T ss_pred HHHHHHHHHHHHH--hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666665553 4899999999999999999999999999999999999999887666655433221 1111110
Q ss_pred CcchhhHHhhhhhhccccccccccceeeeeccC--CCcchhHhHHHHHHHHHHHHHHHHhhhhh---hHHHHHHHHHHHH
Q psy11547 184 SILPWIFTGRILTGLGSGMVGAPSRIYTAECSQ--PHLRGMLSSLASFGVSLGVLFEYSLGAFL---SWDTVAAISTIIP 258 (587)
Q Consensus 184 ~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~--~~~r~~~~~~~~~~~~~G~~i~~~l~~~l---~wr~~f~~~~~~~ 258 (587)
......++++++.|.+.....+. +.++.+ .+++++.++......++|..+++++++.+ +|++.|++.+++.
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~f~~~~~~~ 180 (420)
T PRK09528 105 NILLGAIVGGIYLGFGFLAGAGA----IEAYIERVSRRSGFEYGRARMWGSLGWALCAFIAGILFNINPQINFWLGSGSA 180 (420)
T ss_pred HHHHHHHHHHHHhhhhhccchhh----hhhHHHHHHhhccccchhhHHhhhHHHHHHHHHHHHHHhcCchHhHHHHHHHH
Confidence 00001223344444433333333 333332 34567788888888999999999999888 8999999988888
Q ss_pred HHHHHHhccc-CCCchHHHhcCCHHHHHHHHHHHhCCCcchHHHHhhHHHHHHHHHHHhhhhhhHhHHhhhcCCchHHHH
Q psy11547 259 VLSIIAGCLM-PESPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQGLYEFSKRQETQKSRNFKETLAAIVEPACLKPFV 337 (587)
Q Consensus 259 ~~~~~~~~~~-~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (587)
++.+++.+++ +|.++....+ +.++ +++++...+...+.++++.++...+
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~-~~~~-----------------------------~~~~~~~~~~~~~~l~~~~~~~l~l 230 (420)
T PRK09528 181 LILLVLLFFAKPDAPSTAKVA-NALG-----------------------------ANASAVSLKDALALLKLPKFWFLVL 230 (420)
T ss_pred HHHHHHHhcccccccchhhhc-cchh-----------------------------cccccccHHHHHHHccCCCeEeehH
Confidence 7776666554 3432110000 0000 0001111233445666666554332
Q ss_pred HHHHHHHHHHhccchhhHhcHHHHHHh----cCCC-cchHHHHHHHHHHHHHHHHhHHHhhcccCCchhhHhhhHHHHHH
Q psy11547 338 ILMLYFLIYQFSGVNPVTFYAVNIFKD----AGAH-VNNNLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVS 412 (587)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~~-~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~~~~~~~~~~~~~~~ 412 (587)
.......+ +.....+.|.++.+ .+.+ ...+....+..+...++.++.|++.||+++|+.+..+.++.+++
T Consensus 231 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~ 305 (420)
T PRK09528 231 YVIGVACF-----YDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVR 305 (420)
T ss_pred HHHHHHHH-----HHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHH
Confidence 22222221 11122223333332 2333 23356666677788899999999999999999988887777776
Q ss_pred HHHHHHHHHhccCCCCCCCcCccchhHHHHHHHHHHHHHhccccccceeeeeccCCCCchhhHHHH-HHHHHHHHHHHHH
Q psy11547 413 MTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGL-TTCACHFFIFLTV 491 (587)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~-~~~~~~~g~~i~~ 491 (587)
.+++.+ ..+.+.......+.+...... .+....++.+.+|++.+++..++ .++...+|.++++
T Consensus 306 ~~l~~~---------------~~~~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~ 369 (420)
T PRK09528 306 IIGSGF---------------ATGPLEVSILKLLHAFEVPFL-LVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLS 369 (420)
T ss_pred HHHHHh---------------cccHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHH
Confidence 666554 122333333233333222222 22234677888999999888766 5677889999999
Q ss_pred HhhHHHHHhhhhhhHHHHHHHHHHHHHHHhheeccc
Q psy11547 492 KSYNMFQTHLTKEGTFLMYGCISLLGTIFFYVYLPE 527 (587)
Q Consensus 492 ~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 527 (587)
.+.|.+.|..|++..|.+.+++.++..++.++..++
T Consensus 370 ~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~~~~~ 405 (420)
T PRK09528 370 TLAGNLYDSIGFQGTYLILGGIVLLFTLISVFTLSG 405 (420)
T ss_pred HHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999998888877776655554443
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.2e-26 Score=232.29 Aligned_cols=333 Identities=14% Similarity=0.127 Sum_probs=227.4
Q ss_pred hccccccHHHHHhhhcCCCCCccCcchhHHHHHHHHHHHHHHHHhHHHhhhccchhHHHHHhhHHHHHHHHHHHhcCCCC
Q psy11547 103 GMVFGFSAAATSQLISRDSPYRITSDESTWIASLSAIGTMVGCVLGGYMMDLVGRKMTLIITEVPTILGWALIALAPSLP 182 (587)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~i~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~ 182 (587)
.+......+.+|.+.++ +|.++.+.+++.+++.++..++++++|+++||+|||+++.++.++..++.+++.++++++
T Consensus 21 ~~~~~~~~p~~~~i~~~---~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~ 97 (394)
T PRK11652 21 QMAQTIYVPAIADMARD---LNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFAHSLT 97 (394)
T ss_pred HHHHHHHhccHHHHHHH---hCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHH
Confidence 34445556778888875 999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCcchhhHHhhhhhhccccccccccceeeeeccCCCcchhHhHHHHHHHHHHHHHHHHhhhhh----hHHHHHHHHHHHH
Q psy11547 183 SSILPWIFTGRILTGLGSGMVGAPSRIYTAECSQPHLRGMLSSLASFGVSLGVLFEYSLGAFL----SWDTVAAISTIIP 258 (587)
Q Consensus 183 ~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l----~wr~~f~~~~~~~ 258 (587)
.+++.|++.|++.+...+....+..|++++++|+++.++...+..+|..++|.+++.+ +||+.|++.++..
T Consensus 98 -----~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~ 172 (394)
T PRK11652 98 -----VLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLG 172 (394)
T ss_pred -----HHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHH
Confidence 9999999999999888888888889999999999999999999999999999998877 8999999988777
Q ss_pred HHHHHH-hcccCCCchHHHhcCCHHHHHHHHHHHhCCCcchHHHHhhHHHHHHHHHHHhhhhhhHhHHhhhcCCchHHHH
Q psy11547 259 VLSIIA-GCLMPESPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQGLYEFSKRQETQKSRNFKETLAAIVEPACLKPFV 337 (587)
Q Consensus 259 ~~~~~~-~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (587)
++..++ .+++||+++.. ++.. ...+.+.+.++++..+....
T Consensus 173 ~~~~~~~~~~~~~~~~~~---~~~~-----------------------------------~~~~~~~~~~~~~~~~~~~~ 214 (394)
T PRK11652 173 AGVTFSMARWMPETRPAD---ARRT-----------------------------------RVLASYRTLLSNRRFNCYLL 214 (394)
T ss_pred HHHHHHHHHhCCccCccc---cchh-----------------------------------HHHHHHHHHHcChHHHHHHH
Confidence 655444 34478764210 0000 00112233344444332222
Q ss_pred HHHHHHHHHHhccchhhHhcHHHHHHh-cCCC-cchHHHHHHHHHHHHHHHHhHHHhhcccCCchhhHhhhHHHHHHHHH
Q psy11547 338 ILMLYFLIYQFSGVNPVTFYAVNIFKD-AGAH-VNNNLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTG 415 (587)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~-~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~ 415 (587)
..+.. +.+......+.+.++++ .|.+ ...+.......++.+++..+.+++.||++++.. .......++.+.
T Consensus 215 ~~~~~-----~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~--~~~~~~~~~~~~ 287 (394)
T PRK11652 215 MLIGT-----LAGIAVFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMW--QSVICCLLAGLL 287 (394)
T ss_pred HHHHH-----HHHHHHHHHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 11111 11122233344555555 6766 344555556667777888888888888873222 222222222222
Q ss_pred HHHHHHhccCCCCCCCcCccchhHHHHHHHHHHHHHhccccccceeeeeccCCCCchhhHHHHHHHHHHHHHHHHHHhhH
Q psy11547 416 LGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYN 495 (587)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g 495 (587)
+...... . ....+.......+.+.+.+. ..+...++..|.+| +.++++.++.+....+|..+++.+.+
T Consensus 288 ~~~~~~~-~---------~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~ 355 (394)
T PRK11652 288 MWIPGWF-G---------VMNVWTLLVPAALFFFGAGM-LFPLATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSA 355 (394)
T ss_pred HHHHHHh-c---------cccHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 2211111 0 01223333333333333333 33444567778887 56799999999999999999999988
Q ss_pred HHHHh
Q psy11547 496 MFQTH 500 (587)
Q Consensus 496 ~l~~~ 500 (587)
.+.+.
T Consensus 356 ~~~~~ 360 (394)
T PRK11652 356 MLPQT 360 (394)
T ss_pred HccCC
Confidence 77654
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.8e-26 Score=230.78 Aligned_cols=352 Identities=12% Similarity=0.069 Sum_probs=223.1
Q ss_pred hhhccccccHHHHHhhhcCCCCCccCcchhHHHHHHHHH-HHHHHHHhHHHhhhccchhHHH-HHhhHHHHHHHHHHHhc
Q psy11547 101 NTGMVFGFSAAATSQLISRDSPYRITSDESTWIASLSAI-GTMVGCVLGGYMMDLVGRKMTL-IITEVPTILGWALIALA 178 (587)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~i~s~~~l-~~~i~~~~~g~l~dr~Grr~~l-~~~~~~~~i~~~~~~~~ 178 (587)
..++......+.+|....+ ++|++.++.|++.+...+ ++.++.+++|+ +||+||||.+ ..+.++.+++.++.+++
T Consensus 26 ~~~~~~~~~~p~~~~~l~~--~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~~~~~~ 102 (393)
T PRK15011 26 LTGIAGALQTPTLSIFLTD--EVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACTLFAWN 102 (393)
T ss_pred HHHHHHHHHHHHHHHHHHh--hcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHHHHHHh
Confidence 3344444455766665433 599999999999876655 66666655666 9999998875 55666667888888899
Q ss_pred CCCCCCcchhhHHhhhhhhccccccccccceeeeeccCCCcc--hhHhHHHHHHHHHHHHHHHHhhhhh----hHHHHHH
Q psy11547 179 PSLPSSILPWIFTGRILTGLGSGMVGAPSRIYTAECSQPHLR--GMLSSLASFGVSLGVLFEYSLGAFL----SWDTVAA 252 (587)
Q Consensus 179 ~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r--~~~~~~~~~~~~~G~~i~~~l~~~l----~wr~~f~ 252 (587)
++++ .+++.+.+.|...+...|...+++.++.++++| +...++.+.+.++|.+++|++++.+ |||..|+
T Consensus 103 ~~~~-----~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~ 177 (393)
T PRK15011 103 RNYF-----VLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYL 177 (393)
T ss_pred hHHH-----HHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHH
Confidence 8888 766555544444456778888888888776655 3456788889999999999999887 9999999
Q ss_pred HHHHHHHHHHHHhcc-cCCCchHHHhcCCHHHHHHHHHHHhCCCcchHHHHhhHHHHHHHHHHHhhhhhhHhHHhhhcCC
Q psy11547 253 ISTIIPVLSIIAGCL-MPESPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQGLYEFSKRQETQKSRNFKETLAAIVEPA 331 (587)
Q Consensus 253 ~~~~~~~~~~~~~~~-~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (587)
+.++..++..+..++ +||.++. +++.+ + + .+.. .++++
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~---~-----------------------------~---~~~~---~~~~~ 216 (393)
T PRK15011 178 SAAVAFIVCGVMVWLFLPSMRKE---LPLAT---G-----------------------------T---LEAP---RRNRR 216 (393)
T ss_pred HHHHHHHHHHHHHHhhcCccCCC---Ccccc---c-----------------------------c---cccc---ccccc
Confidence 998887776655544 7876421 00000 0 0 0000 00111
Q ss_pred chHHHHHHHHHHHHHHhccchhhHhcHHHHHH-hcCCC-cchHHHHHHHHHHHHHHHHhHHHhhcccCCchhhHhhhHHH
Q psy11547 332 CLKPFVILMLYFLIYQFSGVNPVTFYAVNIFK-DAGAH-VNNNLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGC 409 (587)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~-~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~~~~~~~~~~~~ 409 (587)
... ........ .+.....+..+.|.+++ +.+++ ...+.......+..+++.++.|+++||++||+.+..+.+..
T Consensus 217 ~~~---~~~~~~~~-~~~~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~ 292 (393)
T PRK15011 217 DTL---LLFVICTL-MWGTNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAG 292 (393)
T ss_pred cHH---HHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHH
Confidence 111 11111111 11123334455666665 46676 34455555556677888999999999999998776665544
Q ss_pred HHHHHHHHHHHHhccCCCCCCCcCccchhHHHHHHHHHHHHHhccccccceeeeeccCCCCchhhHHHHHHHHHHHHHHH
Q psy11547 410 GVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFL 489 (587)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i 489 (587)
.+....+.. . ...+..+....+.....+... +....+..|.+|++ ++++.++.+...++|..+
T Consensus 293 ~~~~~~~~~---~------------~~~~~~l~~~~l~~~~~g~~~-~~~~~~~~~~~p~~-~g~~~~~~~~~~~lg~~~ 355 (393)
T PRK15011 293 VCFYAGMLM---A------------HSPAILLGLQLLNAIYIGILG-GIGMLYFQDLMPGQ-AGSATTLYTNTSRVGWII 355 (393)
T ss_pred HHHHHHHHH---H------------hhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCCC-cchHHHHHHHHHHHHHHH
Confidence 433322221 1 122222222222222222211 12235567888864 899999999999999999
Q ss_pred HHHhhHHHHHhhhhhhHHHHHHHHHHHHHHHhh
Q psy11547 490 TVKSYNMFQTHLTKEGTFLMYGCISLLGTIFFY 522 (587)
Q Consensus 490 ~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 522 (587)
++.+.|.+.+..|+...+.+.+++++++.+..+
T Consensus 356 g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~ 388 (393)
T PRK15011 356 AGSLAGIVAEIWNYHAVFWFALVMIIATLFCLL 388 (393)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998888877776666555443
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.2e-26 Score=231.16 Aligned_cols=370 Identities=12% Similarity=0.125 Sum_probs=240.8
Q ss_pred HhhhhhhccccccHHHHHhhhcCCCCCccCcchhHHHHHHHHHHHHHHHHhHHHhhhccch-hHHHHHhhHHHHHHHHHH
Q psy11547 97 LGNVNTGMVFGFSAAATSQLISRDSPYRITSDESTWIASLSAIGTMVGCVLGGYMMDLVGR-KMTLIITEVPTILGWALI 175 (587)
Q Consensus 97 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~i~s~~~l~~~i~~~~~g~l~dr~Gr-r~~l~~~~~~~~i~~~~~ 175 (587)
+..|.+....+...+.++....+ ++|++..|.|++.+++.++..++++++|+++||+|| |+++.++.++.+++..+.
T Consensus 9 ~~~~~~~~~~~~~~~~l~~~l~~--~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~ 86 (418)
T TIGR00889 9 FMSFLQWFIWGSWLVTLGSYMSK--TLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFA 86 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 33444445555554444444433 489999999999999999999999999999999965 788898999998998888
Q ss_pred HhcCCCCCCcchhhHHhhhhhhccccccccccceeee--------eccCCCcchhHhHHHHHHHHHHHHHHHHhhhhh--
Q psy11547 176 ALAPSLPSSILPWIFTGRILTGLGSGMVGAPSRIYTA--------ECSQPHLRGMLSSLASFGVSLGVLFEYSLGAFL-- 245 (587)
Q Consensus 176 ~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~--------e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l-- 245 (587)
.+.++++ .+++.|++.|++.+...+...++.. |......|.+..| .+|.++++.+++.+
T Consensus 87 ~~~~~~~-----~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~~l~g~l~~ 155 (418)
T TIGR00889 87 AQVTTPA-----GMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMG------TIGFIAAMWAVSLLDI 155 (418)
T ss_pred HHhcCHH-----HHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeeh------hHHHHHHHHHHHHhcc
Confidence 9998888 8899999999987766665554421 2222233455555 35666667666655
Q ss_pred --hHHHHHHHHHHHHHHHHHHhcccCCCchHHHhcCCHHHHHHHHHHHhCCCcchHHHHhhHHHHHHHHHHHhhhhhhHh
Q psy11547 246 --SWDTVAAISTIIPVLSIIAGCLMPESPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQGLYEFSKRQETQKSRNFKET 323 (587)
Q Consensus 246 --~wr~~f~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (587)
.|+ +|++.+++.++..++.+++||+|+. +++.+. .. ++....+.
T Consensus 156 ~~~~~-~f~~~~~~~~~~~~~~~~~~e~~~~---~~~~~~---------------------------~~---~~~~~~~~ 201 (418)
T TIGR00889 156 ELSNI-QLYITAGSSALLGVFALTLPDIPVA---KSTAKM---------------------------SI---KVMLGLDA 201 (418)
T ss_pred cchhH-HHHHHHHHHHHHHHHHhcCCCCCCC---cccccc---------------------------CH---HHHhhhhH
Confidence 344 4556666666655555668887531 000000 00 00001122
Q ss_pred HHhhhcCCchHHHHHHHHHHHHHHhccchhhHhcHHHHHHhcCCC---------cchHHHHHHHHHHHHHHHHhHHHhhc
Q psy11547 324 LAAIVEPACLKPFVILMLYFLIYQFSGVNPVTFYAVNIFKDAGAH---------VNNNLAAVIMGIVRLIFTIASCIMMK 394 (587)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~---------~~~~~~~~~~~~~~~i~~~~~g~l~d 394 (587)
.+.++++.++...+..++.... ......+.+.++++.|.+ ...+....+..+..+++.++.+++.|
T Consensus 202 ~~~~k~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~d 276 (418)
T TIGR00889 202 FILFKNKRMAIFFFFSMLLGAP-----LQITNIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLK 276 (418)
T ss_pred HHHhcCCCeeeHHHHHHHHHhH-----HHHHHHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666554332222222221 122334456666665543 22356667777788899999999999
Q ss_pred ccCCchhhHhhhHHHHHHHHHHHHHHHhccCCCCCCCcCccchhHHHHHHHHHHHHHhccccccceeeeeccCCCCchhh
Q psy11547 395 KMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGI 474 (587)
Q Consensus 395 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~ 474 (587)
|+|+|+++.++.++.+++.+++...... ....+...+..++.+.+... ..+....++.|.+|++.|++
T Consensus 277 r~g~r~~l~~~~~~~~v~~~l~~~~~~~-----------~~~~~~l~l~~~l~g~~~~~-~~~~~~~~i~~~~p~~~~g~ 344 (418)
T TIGR00889 277 RFGIKKVMLLSLVAWALRFGFFAYGDPE-----------YFGYALLFLSMIVYGCAFDF-FNISGSVFVEKEVPVHIRAS 344 (418)
T ss_pred HhCcHHHHHHHHHHHHHHHHHHHHcCcc-----------hhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCHHHHHH
Confidence 9999999999888877776555441000 00112222223333333332 23443477899999999999
Q ss_pred HHHHHH-HHHHHHHHHHHHhhHHHHHhh------hhhhHHHHHHHHHHHHHHHhheecccCCC
Q psy11547 475 VGGLTT-CACHFFIFLTVKSYNMFQTHL------TKEGTFLMYGCISLLGTIFFYVYLPETKN 530 (587)
Q Consensus 475 ~~g~~~-~~~~~g~~i~~~~~g~l~~~~------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 530 (587)
+.|+.+ ....+|.+++|.+.|.+.|.. ||+..|.+.+++.+++.++.+++.+++++
T Consensus 345 ~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~~ 407 (418)
T TIGR00889 345 AQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYSHN 407 (418)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCccc
Confidence 999997 567899999999999999984 47888888888888887777777776543
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.5e-26 Score=227.74 Aligned_cols=355 Identities=14% Similarity=0.068 Sum_probs=248.6
Q ss_pred HHhhhhhhccccccHHHHHhhhcCCCCCccCcchhHHHHHHHHHHHHHHHHhHHHhhhccchhHHH----HHhhHHHHHH
Q psy11547 96 NLGNVNTGMVFGFSAAATSQLISRDSPYRITSDESTWIASLSAIGTMVGCVLGGYMMDLVGRKMTL----IITEVPTILG 171 (587)
Q Consensus 96 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~i~s~~~l~~~i~~~~~g~l~dr~Grr~~l----~~~~~~~~i~ 171 (587)
.+..+...+..+...|.+|.+.++ +|.|..++|++.+++.++..++++++|+++||+|||+.. ..+..+..+
T Consensus 10 ~~~~~~~~~~~~~~~p~l~~~l~~---~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~- 85 (382)
T TIGR00902 10 ALGFFGYFCAYGIFLPFFPAWLKG---IGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAA- 85 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH-
Confidence 344555555667778889999885 999999999999999999999999999999999985433 233222222
Q ss_pred HHHHHhcCCCCCCcchhhHHhhhhhhccccccccccceeeeeccCCCcchhHhHHHHHHHHHHHHHHHHhhhhh----hH
Q psy11547 172 WALIALAPSLPSSILPWIFTGRILTGLGSGMVGAPSRIYTAECSQPHLRGMLSSLASFGVSLGVLFEYSLGAFL----SW 247 (587)
Q Consensus 172 ~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l----~w 247 (587)
..+..+++++ .+++.|+++|.+.+...|...++..++ +++|++..+....+.++|.+++|++++.+ ||
T Consensus 86 -~~~~~~~~~~-----~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~ 157 (382)
T TIGR00902 86 -AFSAGAHNAW-----LLFIAIGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDE 157 (382)
T ss_pred -HHHHhhhhHH-----HHHHHHHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcCh
Confidence 2445678888 899999999999888889888887654 46789999999999999999999998887 99
Q ss_pred HHHHHHHHHHHHHHHHHhcccCCCchHHHhcCCHHHHHHHHHHHhCCCcchHHHHhhHHHHHHHHHHHhhhhhhHhHHhh
Q psy11547 248 DTVAAISTIIPVLSIIAGCLMPESPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQGLYEFSKRQETQKSRNFKETLAAI 327 (587)
Q Consensus 248 r~~f~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (587)
|..|++.++..++.++. +.++|+++. +++.++ ++....+...+.+
T Consensus 158 ~~~f~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~-------------------------------~~~~~~~~~~~~l 202 (382)
T TIGR00902 158 QNILAILTAGLAFMLIG-FLIKPTIPP---KDAIPE-------------------------------DESQGDSAFIALL 202 (382)
T ss_pred hHHHHHHHHHHHHHHHH-HHcCCCCCC---Cccccc-------------------------------cccccchhHHHHH
Confidence 99998876653333332 233333210 000000 0001122344556
Q ss_pred hcCCchHHHHHHHHHHHHHHhccchhhHhcHHHHHHhcCCC-cchHHHHHHHHHHHHHHHHhHHHhhcccCCchhhHhhh
Q psy11547 328 VEPACLKPFVILMLYFLIYQFSGVNPVTFYAVNIFKDAGAH-VNNNLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISS 406 (587)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~~~~~~~~~ 406 (587)
+++.++...+..++. .........+.+.++++.|.+ ...+....+..+..+++.++.+++.||++.|+.+.++.
T Consensus 203 ~~~~~~~~l~~~~l~-----~~~~~~~~~~~~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~ 277 (382)
T TIGR00902 203 KNPMNLRFLAAVCLI-----QGAHAAYYGFSAIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISA 277 (382)
T ss_pred cChHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHH
Confidence 665543322222221 122444555667777888887 45566677788888999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCCCcCccchhHHHHHHHHHHHHHhccccccceeeeeccCCCCchhhHHHHHHH-HHHH
Q psy11547 407 IGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTC-ACHF 485 (587)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~-~~~~ 485 (587)
+...+....+.+ .++.+..+....+.+..++..... ...++.+. |++.+++++++.+. ...+
T Consensus 278 ~~~~~~~~~~~~---------------~~~~~~~~~~q~l~g~~~~~~~~~-~~~~i~~~-~~~~~~~~q~~~~~~~~g~ 340 (382)
T TIGR00902 278 IACVGRWAIIGA---------------IEAFPLIFLLQILHCGTFAVCHLA-AMRYIAAQ-PGSEIAKLQALYNALAMGG 340 (382)
T ss_pred HHHHHHHHHHHh---------------HhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHhC-CHhhHHHHHHHHHHHHHHH
Confidence 888888776654 123344444444555555444433 34778887 98899999999874 5679
Q ss_pred HHHHHHHhhHHHHHhhhhhhHHHHHHHHHHHHHHH
Q psy11547 486 FIFLTVKSYNMFQTHLTKEGTFLMYGCISLLGTIF 520 (587)
Q Consensus 486 g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~ 520 (587)
|..+++.+.|.+.|+.|. ..|++.+++.+++.++
T Consensus 341 g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~~~ 374 (382)
T TIGR00902 341 LIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAFFL 374 (382)
T ss_pred HHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHH
Confidence 999999999999999986 5677777777665443
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.7e-26 Score=228.15 Aligned_cols=333 Identities=13% Similarity=0.132 Sum_probs=232.1
Q ss_pred hhhhccccccHHHHHhhhcCCCCCccCcchhHHHHHHHHHHHHHHHHhHHHhhhccchhHHHHHhhHHHHHHHHHHHhcC
Q psy11547 100 VNTGMVFGFSAAATSQLISRDSPYRITSDESTWIASLSAIGTMVGCVLGGYMMDLVGRKMTLIITEVPTILGWALIALAP 179 (587)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~i~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~ 179 (587)
+.........++.+|.+.++ +|++.++.|++.+++.+++.+++++.|+++||+|||+++.++.++..++.+++ .++
T Consensus 10 ~~~~~~~~~~~~~lp~l~~~---~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~ 85 (355)
T TIGR00896 10 LNLRPALTSVGPLLPQIRSA---LGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAP 85 (355)
T ss_pred hcccCccccCcccHHHHHHH---hCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-Hhc
Confidence 33333445667899999985 99999999999999999999999999999999999999999999988888877 778
Q ss_pred CCCCCcchhhHHhhhhhhccccccccccceeeeeccCCCcchhHhHHHHHHHHHHHHHHHHhhhhh------hHHHHHHH
Q psy11547 180 SLPSSILPWIFTGRILTGLGSGMVGAPSRIYTAECSQPHLRGMLSSLASFGVSLGVLFEYSLGAFL------SWDTVAAI 253 (587)
Q Consensus 180 ~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l------~wr~~f~~ 253 (587)
+++ .+++.|++.|++.+...+....++.|+++ ++|++++++...+.++|..+++.++..+ +||+.|.+
T Consensus 86 ~~~-----~l~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~ 159 (355)
T TIGR00896 86 GTA-----LLFAGTALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAW 159 (355)
T ss_pred cHH-----HHHHHHHHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 887 88999999999999888888888889886 5799999999999999999998887766 39999887
Q ss_pred HHHHHHHHHHHhcccCCCchHHHhcCCHHHHHHHHHHHhCCCcchHHHHhhHHHHHHHHHHHhhhhhhHhHHhhhcCCch
Q psy11547 254 STIIPVLSIIAGCLMPESPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQGLYEFSKRQETQKSRNFKETLAAIVEPACL 333 (587)
Q Consensus 254 ~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (587)
.+++.++..+ .++|+.++. + +. + ++......++.++++..+
T Consensus 160 ~~~~~~~~~~--~~~~~~~~~---~-~~-------------~--------------------~~~~~~~~~~~~~~~~~~ 200 (355)
T TIGR00896 160 WALPALLALL--AWIPQVRRR---V-AA-------------N--------------------QTTTRLTPVRIWRSPLAW 200 (355)
T ss_pred HHHHHHHHHH--HHhhhhccc---c-CC-------------C--------------------CCCCCCCCchhhcCHhHH
Confidence 7665444322 223433210 0 00 0 000001122334444332
Q ss_pred HHHHHHHHHHHHHHhccchhhHhcHHHHHHhcCCC-cchHHHHHHHHHHHHHHHHhHHHhhcccC-CchhhHhhhHHHHH
Q psy11547 334 KPFVILMLYFLIYQFSGVNPVTFYAVNIFKDAGAH-VNNNLAAVIMGIVRLIFTIASCIMMKKMG-RRSLTFISSIGCGV 411 (587)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~i~~~~~g~l~d~~g-~~~~~~~~~~~~~~ 411 (587)
...+ ..+.....+.....+.|.++++.|.+ ...+.......++.++++++.|++.||++ ||+.+..+.++.++
T Consensus 201 ~~~~-----~~~~~~~~~~~~~~~lp~~~~~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~ 275 (355)
T TIGR00896 201 QVTV-----FFGLQSGLYYSLIGWLPAILISHGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLV 275 (355)
T ss_pred HHHH-----HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHH
Confidence 2111 11112222344566788888888887 45567788888999999999999999994 56666666666666
Q ss_pred HHHHHHHHHHhccCCCCCCCcCccchhHHHHHHHHHHHHHhccccccceeeeecc-CCCCchhhHHHHHHHHHHHHHHHH
Q psy11547 412 SMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEV-YPTKVRGIVGGLTTCACHFFIFLT 490 (587)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~~~r~~~~g~~~~~~~~g~~i~ 490 (587)
+.+.+.+.. ..... ....+++.+.+ ...+...+.+.+. .+++.++...++.+...+++.+++
T Consensus 276 ~~~~~~~~~---------------~~~~~-~~~~l~g~~~g-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g 338 (355)
T TIGR00896 276 GLCGLLFAP---------------MHGLW-AWALVLGLGQG-GAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALG 338 (355)
T ss_pred HHHHHHHhh---------------hhHHH-HHHHHHHHhhh-hHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 655544311 11111 12223333332 2223333444433 345667889999999999999999
Q ss_pred HHhhHHHHHhhhh
Q psy11547 491 VKSYNMFQTHLTK 503 (587)
Q Consensus 491 ~~~~g~l~~~~g~ 503 (587)
|.+.|.+.|+.|.
T Consensus 339 p~~~G~l~~~~g~ 351 (355)
T TIGR00896 339 PLFVGVLHDISGN 351 (355)
T ss_pred HHHHHHHHHHhcc
Confidence 9999999998774
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-25 Score=227.44 Aligned_cols=365 Identities=13% Similarity=0.142 Sum_probs=243.3
Q ss_pred HhhhhhhccccccHHHHHhhhcCCCCCccCcchhHHHHHHHHHHHHHHHHhHHHhhhcc-----chhH-HHHHhhHHHHH
Q psy11547 97 LGNVNTGMVFGFSAAATSQLISRDSPYRITSDESTWIASLSAIGTMVGCVLGGYMMDLV-----GRKM-TLIITEVPTIL 170 (587)
Q Consensus 97 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~i~s~~~l~~~i~~~~~g~l~dr~-----Grr~-~l~~~~~~~~i 170 (587)
.-++.+|+..+.....+|.+.++ .|+|.+++|++..+... .+..+++|+++||+ |||| ++.++.++.++
T Consensus 6 ~l~~~~~~~~~~~~~~~~~~l~~---~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l 80 (402)
T PRK11902 6 LLGFASGLPLALTSGTLQAWMTV---EGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAA 80 (402)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHH---cCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHH
Confidence 34667788888889999999886 89999999999777776 58899999999999 8765 78888999988
Q ss_pred HHHHHHhcCCCCCCcchhhHHhhhhhhccccccccccceeeeeccCCCcchhHhHHHHHHHHHHHHHHHHhhhhh-----
Q psy11547 171 GWALIALAPSLPSSILPWIFTGRILTGLGSGMVGAPSRIYTAECSQPHLRGMLSSLASFGVSLGVLFEYSLGAFL----- 245 (587)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l----- 245 (587)
+..+.++.+... ..+.+++..++.++..+...++..+++.|++|+++|+++.++...+..+|.++++.++..+
T Consensus 81 ~~~~l~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~ 158 (402)
T PRK11902 81 SIAAMAFCPPHA--ALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVL 158 (402)
T ss_pred HHHHHHhcCccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhccc
Confidence 888888874321 1226777888888888889999999999999999999999999999999999999877665
Q ss_pred hHHHHHHHHHHHHHHHHHHhcccCCCchHHHhcCCHHHHHHHHHHHhCCCcchHHHHhhHHHHHHHHHHHhhhhhhHhHH
Q psy11547 246 SWDTVAAISTIIPVLSIIAGCLMPESPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQGLYEFSKRQETQKSRNFKETLA 325 (587)
Q Consensus 246 ~wr~~f~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (587)
+||..|++.+++.++..+..+++||+++.. ++.++. ++...+.+.+
T Consensus 159 gw~~~f~i~a~~~l~~~l~~~~~~e~~~~~---~~~~~~-------------------------------~~~~~~~~~~ 204 (402)
T PRK11902 159 GWGNTYLLMAGLMLAGALTTLWAPEPEVPA---RPPRSL-------------------------------GEAVVGPLRD 204 (402)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCcccc---cccchh-------------------------------HHHHHHHHHH
Confidence 899999998888777666555677764310 000000 0001223445
Q ss_pred hhhcCCchHHHHHHHHHHHHHHhccchhhHhcHHHHHHhcCCCc-chHHHHHHH-HHHHHHHHHhHHHhhcccCCchhhH
Q psy11547 326 AIVEPACLKPFVILMLYFLIYQFSGVNPVTFYAVNIFKDAGAHV-NNNLAAVIM-GIVRLIFTIASCIMMKKMGRRSLTF 403 (587)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~-~~~~~i~~~~~g~l~d~~g~~~~~~ 403 (587)
.++++..+.......+......+ ......+.+.++.|.+. ..+...... .++.+++.++++++.||+++|+.+.
T Consensus 205 l~~~~~~~~~l~~~~l~~~~~~~----~~~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~ 280 (402)
T PRK11902 205 FFSRRGAWALLLLIVLYKLGDAF----AGSLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLM 280 (402)
T ss_pred HHhCcCHHHHHHHHHHHHhHHHH----HHHHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 56666544433322222221111 11222344445577773 334443333 3457889999999999999998877
Q ss_pred hhhHHHHHHHHHHHHHHHhccCCCCCCCcCccchhHHHHHHHH---HHHHHhccccccceeeeeccCCCCchhhHHHHHH
Q psy11547 404 ISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMT---FTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTT 480 (587)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~ 480 (587)
.+.++..+..+.+...... ....+.......+ ..+.......+....++.+.+|.+ ..++..
T Consensus 281 ~~~~~~~l~~l~~~~~~~~-----------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 345 (402)
T PRK11902 281 LFGVLQAVSNLGYWVLAVT-----------PKHLWTMALAIGIENLCGGMGTAAFVALLMALCNRSFSAT----QYALLS 345 (402)
T ss_pred HHHHHHHHHHHHHHHHHhc-----------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHH----HHHHHH
Confidence 6666655554433322211 1122222222211 111222222233345666666644 455556
Q ss_pred HHHHHHHHHHHHhhHHHHHhhhhhhHHHHHHHHHHHHHHHh
Q psy11547 481 CACHFFIFLTVKSYNMFQTHLTKEGTFLMYGCISLLGTIFF 521 (587)
Q Consensus 481 ~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~ 521 (587)
....++..+++.+.|.+.|..|+...|.+.+++++++.++.
T Consensus 346 ~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~ 386 (402)
T PRK11902 346 ALASVGRVYVGPTSGYLVEAYGWPGFYLMTVVIALPGLALL 386 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHH
Confidence 66677777777789999999999988888888777766554
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.5e-26 Score=228.75 Aligned_cols=337 Identities=13% Similarity=0.130 Sum_probs=219.7
Q ss_pred hhhhhhccccccHHHHHh-hhcCCCCCccCcchhHHHHHHHHHHHHHHHHhHHHhhhccchhHHHHHhhHHHHHHHHHHH
Q psy11547 98 GNVNTGMVFGFSAAATSQ-LISRDSPYRITSDESTWIASLSAIGTMVGCVLGGYMMDLVGRKMTLIITEVPTILGWALIA 176 (587)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~s~~~~g~i~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~ 176 (587)
+.+..........+.+|. +.++ +|++..+.+++.+++.+++.++++++|+++||+|||++++++.++..++.++++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~---~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~ 85 (366)
T TIGR00886 9 GFFLSFSVWFAFSPLAVQMIKDD---LGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAG 85 (366)
T ss_pred HHHHHHHHHHHhHHhhhHHHHHH---hCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHH
Confidence 333344455556788885 6664 999999999999999999999999999999999999999999999999999999
Q ss_pred hcC-CCCCCcchhhHHhhhhhhccccccccccceeeeeccCCCcchhHhHHHHHHHHHHHHHHHHhhhhh----------
Q psy11547 177 LAP-SLPSSILPWIFTGRILTGLGSGMVGAPSRIYTAECSQPHLRGMLSSLASFGVSLGVLFEYSLGAFL---------- 245 (587)
Q Consensus 177 ~~~-~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l---------- 245 (587)
+++ +++ .+++.|+++|++.+. .+....++.|++|+++|++++++......+|..+++.++..+
T Consensus 86 ~~~~~~~-----~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~ 159 (366)
T TIGR00886 86 LAVQSYS-----VLLLLRLFIGIAGGS-FASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGL 159 (366)
T ss_pred HHhhhHH-----HHHHHHHHHHHhchh-hHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999 988 899999999998654 566788999999999999999999866666666665554332
Q ss_pred ----hHHHHH-HHHHHHHHHHHHHh-cccCCCchHHHhcCCHHHHHHHHHHHhCCCcchHHHHhhHHHHHHHHHHHhhhh
Q psy11547 246 ----SWDTVA-AISTIIPVLSIIAG-CLMPESPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQGLYEFSKRQETQKSRN 319 (587)
Q Consensus 246 ----~wr~~f-~~~~~~~~~~~~~~-~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (587)
+||+.| +..+++.++..++. .+.+|.|+.. .+.++.. ..+... . .++..
T Consensus 160 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-------~~~~~~------------~---~~~~~ 214 (366)
T TIGR00886 160 PAHLAWGWAFVIVPAGILLLPALLIFFVGADTPPGK---PATGKLS-------FKGARW------------S---VGTGA 214 (366)
T ss_pred cccccccchhHHHHHHHHHHHHHHHHHhcccCCccc---ccchhcc-------cccccc------------c---ccchh
Confidence 599999 44455544443333 3466665311 0000000 000000 0 00001
Q ss_pred hhHhHHhhhcCCchHHHHHHHHHHHHHHhccchhhHhcHHHHHHh-cCCC-cchHHHHHHHHHHHHHHHHhHHHhhcccC
Q psy11547 320 FKETLAAIVEPACLKPFVILMLYFLIYQFSGVNPVTFYAVNIFKD-AGAH-VNNNLAAVIMGIVRLIFTIASCIMMKKMG 397 (587)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~-~~~~~~~~~~~~~~~i~~~~~g~l~d~~g 397 (587)
.+...+.++++..+...+.... ..........+.+.++++ .|.+ .+.+....+..+.+++++++.+++.||+|
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g 289 (366)
T TIGR00886 215 LGDQLKVFRDRHTWILALLYSV-----TFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLG 289 (366)
T ss_pred HHHHHHHHhccchhhHHHHHHH-----HHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhc
Confidence 1133445555554332222111 111233455566667654 5776 44556677788889999999999999999
Q ss_pred CchhhHhhhHHHHHHHHHHHHHHHhccCCCCCCCcCccchhHHHHHHHHHHHHHhccccccceeeeeccCCCCchhhHHH
Q psy11547 398 RRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGG 477 (587)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g 477 (587)
+|+.+..+......+..++...... ....+.......+...+.+.+. +..+.++.+..| +.+|++.|
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~-~~~g~~~g 356 (366)
T TIGR00886 290 GARKLLMSFLGVAMGAFLVVLGLVS-----------PLSLAVFIVLFVALFFFSGAGN-GSTFALVPHIFR-RATGAVSG 356 (366)
T ss_pred cchhHHHHHHHHHHHHHHHHhcCCC-----------cchHHHHHHHHHHHHHHhcccc-chhhhcchhhch-hhcccHHH
Confidence 9887776666555554444331100 0022222233333333333333 334577888887 57899999
Q ss_pred HHHHHHHHH
Q psy11547 478 LTTCACHFF 486 (587)
Q Consensus 478 ~~~~~~~~g 486 (587)
+.+..+++|
T Consensus 357 ~~~~~~~~g 365 (366)
T TIGR00886 357 LVGAIGNLG 365 (366)
T ss_pred HHHHhccCC
Confidence 998887765
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.5e-25 Score=223.09 Aligned_cols=377 Identities=14% Similarity=0.126 Sum_probs=229.8
Q ss_pred HHHHhhhhhhccccccHHHHHhhhcCCCCCccCcchhHHHHHHHHHHHHHHHHhHHHhhhccchhHHHHHhhHHHHHHHH
Q psy11547 94 FANLGNVNTGMVFGFSAAATSQLISRDSPYRITSDESTWIASLSAIGTMVGCVLGGYMMDLVGRKMTLIITEVPTILGWA 173 (587)
Q Consensus 94 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~i~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~ 173 (587)
..++......+.....+.+++.+..+ +|-+ ....|+.+.+.++.+++.++.|+++|.||||.+++.+.++..+|++
T Consensus 48 ~~~~~~~~~~~~~~~~a~~l~~I~~d---iG~~-~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~I 123 (599)
T PF06609_consen 48 AFSLAVIAAYFVLVLPASILPYINAD---IGGS-DNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSI 123 (599)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHh---cCCC-ccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHH
Confidence 34444444555666667778888774 7754 7788999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCCcchhhHHhhhhhhccccccccccceeeeeccCCCcchhHhHHHHHHHHHHHHHHHHhhhhh----hHHH
Q psy11547 174 LIALAPSLPSSILPWIFTGRILTGLGSGMVGAPSRIYTAECSQPHLRGMLSSLASFGVSLGVLFEYSLGAFL----SWDT 249 (587)
Q Consensus 174 ~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l----~wr~ 249 (587)
+++.++|.. .++++..+.|+|.|... .....++|..|.+.|+...++......+...+++.++..+ +|||
T Consensus 124 v~atA~~~~-----~~iag~~l~GvgaG~~~-~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw 197 (599)
T PF06609_consen 124 VCATAQNMN-----TFIAGMVLYGVGAGVQE-LAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRW 197 (599)
T ss_pred HhhcCCcHH-----HHHHHHHHHHHhhHHHH-HHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcch
Confidence 999999999 99999999999987775 4455689999999998888777766666666677777666 8999
Q ss_pred HHHHHHHHHHHHHHHhcc--cCCCchHHHhc-CCHHHHHHHHHHH----------------h--CC---CcchHHHHhhH
Q psy11547 250 VAAISTIIPVLSIIAGCL--MPESPSWLLSQ-GRKDACRNSLRRL----------------R--AN---NYDVEKEVQGL 305 (587)
Q Consensus 250 ~f~~~~~~~~~~~~~~~~--~~esp~~~~~~-~~~~~~~~~~~~~----------------~--~~---~~~~~~~~~~~ 305 (587)
.|++.++...+.+++.++ .|.+.+.+..+ ....+..+.++.+ . .. ..+.......+
T Consensus 198 ~~~~~~i~~~i~~vl~~~fY~PP~~~~~~~~~~s~~~~l~~lD~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~Sa~VIa~l 277 (599)
T PF06609_consen 198 IFYIFIIWSGIALVLIFFFYFPPPRAQLHGRKLSKREQLKELDWIGIFLFIAGLALFLLGLSWGGYPYYPWKSAHVIAPL 277 (599)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCchhhhccccCcHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccchhhH
Confidence 999998887776655444 34332111111 1112222222111 0 00 00111110000
Q ss_pred H----HHH--HHHHHHhh-hhhhHhHHhhhcCCchHHHHHHHHHHHHHHhccchhh-HhcHHHHHHhcCCCc----chHH
Q psy11547 306 Y----EFS--KRQETQKS-RNFKETLAAIVEPACLKPFVILMLYFLIYQFSGVNPV-TFYAVNIFKDAGAHV----NNNL 373 (587)
Q Consensus 306 ~----~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~----~~~~ 373 (587)
. -.. --.+.... +.+.-..+++++++.. ...+...+...+. ++.. .+|.......++-+. ..++
T Consensus 278 viG~~~Lv~F~~wE~~~~~~~Pl~P~~Lf~~~r~~---~~~lvi~fi~G~~-~~s~~~l~p~~~~~vf~~d~~~~~~~~~ 353 (599)
T PF06609_consen 278 VIGFVLLVAFVVWEWFGAPKDPLFPHRLFKDRRGF---AALLVISFISGMN-FFSVNILWPQQVVNVFGSDPISITEIGW 353 (599)
T ss_pred HHHHHHHHHHHHhhhhccCCCCcCCHHHhccchHH---HHHHHHHHHHHHH-HHHHHHHHHHHHhhhccCCCcccceeeh
Confidence 0 000 00010011 1122233455543221 1111222222111 2233 333333333333331 3456
Q ss_pred HHHHHHHHHHHHHHhHHHhhcccCC-chhhHhhhHHHHHHHHHHHHHHHhccCCCCCCCcCccchhHHHHHHHHHHHHHh
Q psy11547 374 AAVIMGIVRLIFTIASCIMMKKMGR-RSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAAST 452 (587)
Q Consensus 374 ~~~~~~~~~~i~~~~~g~l~d~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (587)
.....+++..++.++.+.+..+++| |+.++++.+++.+++.+++..-. ++....+.+..+.+.+.+
T Consensus 354 ~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~ta~~Gama~~~~-------------~n~~~~i~~~~l~g~giG 420 (599)
T PF06609_consen 354 ISSPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVLMTAFCGAMAAVRP-------------DNKNAAIAFLVLAGFGIG 420 (599)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHccC-------------CCcchHHHHHHHHHHhHH
Confidence 6677788888888899999988887 55556666666555444443111 111122222333333333
Q ss_pred ccccccceeeeeccCCCCchhhHHHHHHHHHHHHHHHHHHhhHHHH
Q psy11547 453 IGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQ 498 (587)
Q Consensus 453 ~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~ 498 (587)
....+. ...++-..|++.-+++.|+..++..+|+.++..++..+.
T Consensus 421 ~~~~~~-~~~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy~~I~ 465 (599)
T PF06609_consen 421 GILVPA-IVIAQLIVPDEDIGTATGLTGSIRSIGGSIGYAIYNAIF 465 (599)
T ss_pred HHHHHH-HHeeEeeeCchHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 333233 356666789999999999999999999999998886544
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.6e-25 Score=221.21 Aligned_cols=348 Identities=14% Similarity=0.055 Sum_probs=234.0
Q ss_pred hhccccccHHHHHhhhcCCCCCccCcchhHHHHHHHHHHHHHHHHhHHHhhhccchh----HHHHHhhHHHHHHHHHHHh
Q psy11547 102 TGMVFGFSAAATSQLISRDSPYRITSDESTWIASLSAIGTMVGCVLGGYMMDLVGRK----MTLIITEVPTILGWALIAL 177 (587)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~i~s~~~l~~~i~~~~~g~l~dr~Grr----~~l~~~~~~~~i~~~~~~~ 177 (587)
.....+...|.+|.+.++ +|.|..++|++.+++.++..++++++|+++||+||| +.+.++..+. .......
T Consensus 16 ~~~~~g~~~p~l~~~l~~---~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~--~~~~~~~ 90 (382)
T PRK11128 16 YFFAYGVFLPFWSVWLKG---QGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLF--AVAFWFG 90 (382)
T ss_pred HHHHHHHHhhhHHHHHHh---cCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHH--HHHHHHh
Confidence 344456667888888875 899999999999999999999999999999999984 3333332222 2233444
Q ss_pred cCCCCCCcchhhHHhhhhhhccccccccccceeeeeccCCCcchhHhHHHHHHHHHHHHHHHHhhhhh----hHHHHHHH
Q psy11547 178 APSLPSSILPWIFTGRILTGLGSGMVGAPSRIYTAECSQPHLRGMLSSLASFGVSLGVLFEYSLGAFL----SWDTVAAI 253 (587)
Q Consensus 178 ~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l----~wr~~f~~ 253 (587)
+++++ .+++.|++.|++.+...+...+++.++ +++|+++.+......++|.++||++++++ +||..|++
T Consensus 91 ~~~~~-----~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~ 163 (382)
T PRK11128 91 AHSFW-----LLFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWI 163 (382)
T ss_pred cccHH-----HHHHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHH
Confidence 57787 888999999999988889888877776 35588888889999999999999999987 99999998
Q ss_pred HHHHHHHHHHHhcccCCCchHHHhcCCHHHHHHHHHHHhCCCcchHHHHhhHHHHHHHHHHHhhhhhhHhHHhhhcCCch
Q psy11547 254 STIIPVLSIIAGCLMPESPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQGLYEFSKRQETQKSRNFKETLAAIVEPACL 333 (587)
Q Consensus 254 ~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (587)
.++..++..+...+.||.++ +++.++ +.+...+++.+.++++..+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~----~~~~~~-------------------------------~~~~~~~~~~~i~~~~~~~ 208 (382)
T PRK11128 164 LTAGVASMLLGQLLRPTIMP----QGESRQ-------------------------------QESAGWPAWKALLKEPTVW 208 (382)
T ss_pred HHHHHHHHHHHHHccCCCCC----cccccc-------------------------------ccccccchHHHHHcChhHH
Confidence 77665554444444555321 000000 0000122345566666554
Q ss_pred HHHHHHHHHHHHHHhccchhhHhcHHHHHHhcCCC-cchHHHHHHHHHHHHHHHHhHHHhhcccCCchhhHhhhHHHHHH
Q psy11547 334 KPFVILMLYFLIYQFSGVNPVTFYAVNIFKDAGAH-VNNNLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVS 412 (587)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~~~~~~~~~~~~~~~ 412 (587)
......++... .......+.+.+.++.|.+ ...+....+..+..++..++.+++.||+++|+.+..+.+..+++
T Consensus 209 ~~~~~~~l~~~-----~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~ 283 (382)
T PRK11128 209 RFLLCVSLLQG-----SHAAYYGFSAIYWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVR 283 (382)
T ss_pred HHHHHHHHHHH-----HhHhHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
Confidence 43322222222 1233444556676777777 44566666777788888899999999999999988888877776
Q ss_pred HHHHHHHHHhccCCCCCCCcCccchhHHHHHHHHHHHHHhccccccceeeeeccCCCCchhhHHHHHHHH-HHHHHHHHH
Q psy11547 413 MTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCA-CHFFIFLTV 491 (587)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~-~~~g~~i~~ 491 (587)
.+.+.. .++.+..++..++.+.+..... +....+..+. +++.+++..++.+.. ..+|..++|
T Consensus 284 ~~~~~~---------------~~~~~~~~~~~~l~g~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~ 346 (382)
T PRK11128 284 WGLMGS---------------TTALPWLIVIQILHCGTFTVCH-LAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMT 346 (382)
T ss_pred HHHHHh---------------hhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 655543 1233444444444444444332 3333666665 455568888887644 467778999
Q ss_pred HhhHHHHHhhhhhhHHHHHHHHHHHHHH
Q psy11547 492 KSYNMFQTHLTKEGTFLMYGCISLLGTI 519 (587)
Q Consensus 492 ~~~g~l~~~~g~~~~~~~~~~~~~~~~~ 519 (587)
.+.|.+.|..|. ..++..+++.+++.+
T Consensus 347 ~i~G~l~~~~g~-~~~~~~~~~~~~~~~ 373 (382)
T PRK11128 347 VLSGFLYQHLGA-GVFWVMALVALPALF 373 (382)
T ss_pred HHHHHHHHhccH-HHHHHHHHHHHHHHH
Confidence 999999999886 456655555554433
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.3e-25 Score=224.80 Aligned_cols=366 Identities=13% Similarity=0.111 Sum_probs=235.0
Q ss_pred hhccccccHHHHHhhhcCCCCCccCcchhHHHHHHHHHHHHHHHHhHHHhhhccchhHHHHHhhHHHHHHHHHH---Hhc
Q psy11547 102 TGMVFGFSAAATSQLISRDSPYRITSDESTWIASLSAIGTMVGCVLGGYMMDLVGRKMTLIITEVPTILGWALI---ALA 178 (587)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~i~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~---~~~ 178 (587)
.....+...+.+|.+..+ ++|.+..+.|++.+++.++..+++++.|+++||+|||+.++.+++..+++.... .+.
T Consensus 14 ~~~~~~~~~~~~~~~~~~--~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~ 91 (396)
T TIGR00882 14 YFFIMSAYFPFFPIWLHD--VNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFFIYVFG 91 (396)
T ss_pred HHHHHHHHHHHHHHHHHH--hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344444555777766543 489999999999999999999999999999999999999998777665544332 222
Q ss_pred CCCCCCcchhhHHhhhhhhccccccccccceeeeeccCCCcchhHhHHHHHHHHHHHHHHHHhhhhh---hHHHHHHHHH
Q psy11547 179 PSLPSSILPWIFTGRILTGLGSGMVGAPSRIYTAECSQPHLRGMLSSLASFGVSLGVLFEYSLGAFL---SWDTVAAIST 255 (587)
Q Consensus 179 ~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l---~wr~~f~~~~ 255 (587)
+.........+++.|++.|++.+...+....++.+.. ++++...+......++|.++++.+++.+ +||.+|++.+
T Consensus 92 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~f~~~~ 169 (396)
T TIGR00882 92 PLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVS--RNSNFEYGKARMFGCVGWALCASIAGILFSIDPQIVFWLGS 169 (396)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhh--hhcccccchhhhhcccHHHHHHHHHhhhhccCchHHHHHHH
Confidence 2110000114566788999988888888777766643 2345667777788889999999998877 9999999998
Q ss_pred HHHHHHHHHhcc-cCCCchHHHhcCCHHHHHHHHHHHhCCCcchHHHHhhHHHHHHHHHHHhhhhhhHhHHhhhcCCchH
Q psy11547 256 IIPVLSIIAGCL-MPESPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQGLYEFSKRQETQKSRNFKETLAAIVEPACLK 334 (587)
Q Consensus 256 ~~~~~~~~~~~~-~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (587)
++.++..++.+. .||+|+.. +.++. .+. ++++.+.++..+.++++..+.
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~----~~~~~-------~~~-------------------~~~~~~~~~~~~~l~~~~~~~ 219 (396)
T TIGR00882 170 GFALILMLLLMFAKPKAPSSA----TVANA-------LGA-------------------NASAFSLKLALELFRQRKFWM 219 (396)
T ss_pred HHHHHHHHHHHHhCCCCchhh----hhhcc-------ccc-------------------ccCCCCHHHHHHHHcCCcHHH
Confidence 888877655554 45443210 00000 000 001112234556666665443
Q ss_pred HHHHHHHHHHHHHhccchhhHhcHHHHHHhc----CCC-cchHHHHHHHHHHHHHHHHhHHHhhcccCCchhhHhhhHHH
Q psy11547 335 PFVILMLYFLIYQFSGVNPVTFYAVNIFKDA----GAH-VNNNLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGC 409 (587)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----g~~-~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~~~~~~~~~~~~ 409 (587)
..+..+.... .+.....+.+.++++. +.+ ...+....+..+...++.+..+++.||+++|+.+.++.++.
T Consensus 220 ~~l~~~~~~~-----~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~ 294 (396)
T TIGR00882 220 FVLYVVGVAC-----VYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIM 294 (396)
T ss_pred HHHHHHHHHH-----HHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHH
Confidence 2222211111 1222222344444442 233 22355566677778888899999999999999988887777
Q ss_pred HHHHHHHHHHHHhccCCCCCCCcCccchhHHHHHHHHHHHHHhccccccceeeeeccCCCCchhhHHHH-HHHHHHHHHH
Q psy11547 410 GVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGL-TTCACHFFIF 488 (587)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~-~~~~~~~g~~ 488 (587)
++...+... ..+.+.......+.+.+.... ......+..+..+++.++++.+. .+....+|.+
T Consensus 295 ~l~~~~~~~---------------~~~~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~ 358 (396)
T TIGR00882 295 SVRIIGSSF---------------ATTALEVVILKMLHAFEVPFL-LVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMI 358 (396)
T ss_pred HHHHHHHHh---------------cCChHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHH
Confidence 776655443 122333333333333322221 11222456677788888887766 5678899999
Q ss_pred HHHHhhHHHHHhhhhhhHHHHHHHHHHHHHHHhh
Q psy11547 489 LTVKSYNMFQTHLTKEGTFLMYGCISLLGTIFFY 522 (587)
Q Consensus 489 i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 522 (587)
+++.+.|.+.|..|+..+|.+.+++.++..++..
T Consensus 359 ~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~~~ 392 (396)
T TIGR00882 359 FLSTLAGNMYDSIGFQGAYLVLGCIVLLFTLISV 392 (396)
T ss_pred HHHHhHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988888877766543
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.9e-25 Score=250.72 Aligned_cols=338 Identities=14% Similarity=0.060 Sum_probs=222.9
Q ss_pred CcchhHHHHHHHHHHHHHHHHhHHHhhhccchhHHHHHhhHHHHHHHHHHH---hcCCCCCCcchhhHHhhhhhhccccc
Q psy11547 126 TSDESTWIASLSAIGTMVGCVLGGYMMDLVGRKMTLIITEVPTILGWALIA---LAPSLPSSILPWIFTGRILTGLGSGM 202 (587)
Q Consensus 126 s~~~~g~i~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~---~~~~~~~~~~~~l~~~r~l~G~~~g~ 202 (587)
+....+++.+++.+++.++++++|+++||+|||++++++.++.+++.++.. .+++++ .++++|+++|++.+.
T Consensus 45 ~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~-----~l~~~r~l~G~~~~~ 119 (1146)
T PRK08633 45 QVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFW-----LAFAVTFLLGAQSAI 119 (1146)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHH-----HHHHHHHHHHHHHHh
Confidence 345579999999999999999999999999999999999877666555444 446777 999999999999999
Q ss_pred cccccceeeeeccCCCcchhHhHHHHHHHHHHHHHHHHhhhhh--h-----------HHHHHHHHHHH-HHHHHHHhccc
Q psy11547 203 VGAPSRIYTAECSQPHLRGMLSSLASFGVSLGVLFEYSLGAFL--S-----------WDTVAAISTII-PVLSIIAGCLM 268 (587)
Q Consensus 203 ~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l--~-----------wr~~f~~~~~~-~~~~~~~~~~~ 268 (587)
..++..+++.|++|+++|++++++..++..+|.++|+++++++ . |++.+.+..+. .++.+++.+.+
T Consensus 120 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (1146)
T PRK08633 120 YSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVLLAVAVLGLIFAYRL 199 (1146)
T ss_pred hchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999877 2 23343333333 33333444457
Q ss_pred CCCchHHHhcCCHHHHHHHHHHHhCCCcchHHHHhhHHHHHHHHHHHhhhhhhHhHHhhhcCCchHHHHHHHHHHHHHHh
Q psy11547 269 PESPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQGLYEFSKRQETQKSRNFKETLAAIVEPACLKPFVILMLYFLIYQF 348 (587)
Q Consensus 269 ~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (587)
||+|.....+.+.++ . . ........+...++++.++...+...+.+.
T Consensus 200 ~~~~~~~~~~~~~~~-~-----------------~-----------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~---- 246 (1146)
T PRK08633 200 PKVPAAAPEVFDKKK-Y-----------------L-----------FPKLLWRNLKLLRSDRVLWLAIIGLSYFWF---- 246 (1146)
T ss_pred cCCCCCCcccccccc-c-----------------c-----------cHHHHHHHHHHHhcCcHHHHHHHHHHHHHH----
Confidence 877643111000000 0 0 000011122333344433322222222111
Q ss_pred ccchhhHhcHHHHHH-hcCCC-c-chHHHHHHHHHHHHHHHHhHHHhhcccCCchhhHhhhHHHHHHHHHHHHHHHhccC
Q psy11547 349 SGVNPVTFYAVNIFK-DAGAH-V-NNNLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKD 425 (587)
Q Consensus 349 ~~~~~~~~~~~~~~~-~~g~~-~-~~~~~~~~~~~~~~i~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (587)
.......+.|.++. ..|.+ . ..++......++.+++.++.+++.||+++++.+.++.++.+++.+++.+.
T Consensus 247 -~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~------ 319 (1146)
T PRK08633 247 -ISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTA------ 319 (1146)
T ss_pred -HHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHh------
Confidence 12223344455554 46777 3 45677777888899999999999999999888877777776666555541
Q ss_pred CCCCCCcCccchhHHHHHHHHHHHHHhccccccceeeeeccCCCCchhhHHHHHHHHHHHHHHHHHHhhHHHHHh-hhhh
Q psy11547 426 FWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTH-LTKE 504 (587)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~-~g~~ 504 (587)
...+..++..++++.+.+... +...+++.+..|++.||+++|+.+++..+|.++++.+.+.+... .++.
T Consensus 320 ---------~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~ 389 (1146)
T PRK08633 320 ---------PSLASVLVLFFLFGFSAGLFI-VPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSGLGLSPA 389 (1146)
T ss_pred ---------hhHHHHHHHHHHHHHHHHHhh-HHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCHH
Confidence 122333333444444444333 33358888999999999999999999999988887776655431 2333
Q ss_pred hHHHHHHHHHHHHH
Q psy11547 505 GTFLMYGCISLLGT 518 (587)
Q Consensus 505 ~~~~~~~~~~~~~~ 518 (587)
..+++.+.++++..
T Consensus 390 ~~~~~~~~~~~~~~ 403 (1146)
T PRK08633 390 GLFYLIALVTLIGT 403 (1146)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444333
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.6e-25 Score=250.12 Aligned_cols=348 Identities=13% Similarity=0.054 Sum_probs=227.3
Q ss_pred chhHHHHHHHHHHHHHHHHhHHHhhhccchhHHHHH---hhHHHHHHHHHHHhcCCCCCCcchhhHHhhhhhhccccccc
Q psy11547 128 DESTWIASLSAIGTMVGCVLGGYMMDLVGRKMTLII---TEVPTILGWALIALAPSLPSSILPWIFTGRILTGLGSGMVG 204 (587)
Q Consensus 128 ~~~g~i~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~---~~~~~~i~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~ 204 (587)
...++..+++.++++++++++|+++||+|||+++.. +.++..+..+++...++++ .++++|+++|++.+...
T Consensus 52 ~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~~s~~-----~l~~~~~l~gi~~a~~~ 126 (1140)
T PRK06814 52 ALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHLNSVP-----LLFAALFLMGIHSALFG 126 (1140)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhHH-----HHHHHHHHHHHHHHhhc
Confidence 457888999999999999999999999999997633 3333333333444457888 99999999999999999
Q ss_pred cccceeeeeccCCCcchhHhHHHHHHHHHHHHHHHHhhhhh----hHHHHHHHHHHHHHHHHHHhcccCCCchHHHhcCC
Q psy11547 205 APSRIYTAECSQPHLRGMLSSLASFGVSLGVLFEYSLGAFL----SWDTVAAISTIIPVLSIIAGCLMPESPSWLLSQGR 280 (587)
Q Consensus 205 ~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l----~wr~~f~~~~~~~~~~~~~~~~~~esp~~~~~~~~ 280 (587)
|+..+++.+++++++|++++++.+++.++|.++||++++++ +|++.|++.++..++.+++.+++|+++... ++.
T Consensus 127 p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 204 (1140)
T PRK06814 127 PIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGNFVILVALLMGIAVLGWLASLFIPKTGNAA--PDL 204 (1140)
T ss_pred hHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHhhCCCCCCCC--CCC
Confidence 99999999999999999999999999999999999999998 899999666666666666666677654210 000
Q ss_pred HHHHHHHHHHHhCCCcchHHHHhhHHHHHHHHHHHhhhhhhHhHHhhhcCCchHHHHHHHHHHHHHHhccchhhHhcHHH
Q psy11547 281 KDACRNSLRRLRANNYDVEKEVQGLYEFSKRQETQKSRNFKETLAAIVEPACLKPFVILMLYFLIYQFSGVNPVTFYAVN 360 (587)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (587)
..+ ... .+.....+....+++.++...+...+.++ ....+..+.|.
T Consensus 205 ~~~-~~~----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~p~ 250 (1140)
T PRK06814 205 KID-RNI----------------------------IRSTITLLKYAKADKRIWLAILGISWFWL-----VGAVVLSQLPL 250 (1140)
T ss_pred eec-cch----------------------------HHHHHHHHHHHhcCchHHHHHHHHHHHHH-----HHHHHHHHhHH
Confidence 000 000 00001123333444443332222222222 12334456677
Q ss_pred HHHh-cCCC-cchHHHHHHHHHHHHHHHHhHHHhhcccCCchhhHhhhHHHHHHHHHHHHHHHhccCCCCCC-----CcC
Q psy11547 361 IFKD-AGAH-VNNNLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEY-----KFP 433 (587)
Q Consensus 361 ~~~~-~g~~-~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~ 433 (587)
++.+ .|.+ ...+......+++.+++.++.+++.++..+++.+..+.++.+++.+.+.+........+... ...
T Consensus 251 ~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 330 (1140)
T PRK06814 251 LAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLS 330 (1140)
T ss_pred HHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccchhhhhc
Confidence 7665 5666 45667788888999999999999998887776666555555544443333100000000000 000
Q ss_pred ccchhHHHHHHHHHHHHHhccccccceeeeeccCCCCchhhHHHHHHHHHHHHHHHHHHhhHHHHHh-hhhhhHHHHHHH
Q psy11547 434 AFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTH-LTKEGTFLMYGC 512 (587)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~-~g~~~~~~~~~~ 512 (587)
....+...+..++++.+.+....+ ..+++.+.+|++.+|+++|+.+++..++..+++.+.+.+.+. .++...+++.++
T Consensus 331 ~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~ 409 (1140)
T PRK06814 331 KRHGWRILIDLFGLAAAGGLYIVP-LFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQALGFSIPWIILFIAL 409 (1140)
T ss_pred ccccHHHHHHHHHHHHHHHHhHHH-HHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 022333333344444444433333 458899999999999999999999999999999999988753 345545554444
Q ss_pred HHHHH
Q psy11547 513 ISLLG 517 (587)
Q Consensus 513 ~~~~~ 517 (587)
+.++.
T Consensus 410 ~~~~~ 414 (1140)
T PRK06814 410 ANLIV 414 (1140)
T ss_pred HHHHH
Confidence 43333
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.6e-25 Score=213.69 Aligned_cols=356 Identities=12% Similarity=0.101 Sum_probs=234.1
Q ss_pred ccccHHHHHhhhcCCCCCccCcch-hHHHHHHHHHHHHHHHHhHHHhhhccchhHHHHHhhHHHHHHHHHHHhcCCCCCC
Q psy11547 106 FGFSAAATSQLISRDSPYRITSDE-STWIASLSAIGTMVGCVLGGYMMDLVGRKMTLIITEVPTILGWALIALAPSLPSS 184 (587)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~s~~~-~g~i~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~ 184 (587)
+...+.+.|.+.++ +|+|..| .|.+.++++.+|+++.++.|+++||+|.|+++.++.+.+++.+++.+++.++.
T Consensus 42 R~n~s~a~p~L~~e---lglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~-- 116 (511)
T TIGR00806 42 RPGESFITPYLLTV---LNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSVW-- 116 (511)
T ss_pred hchHHHHHHHHHHH---cCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 45556778888875 9999999 99999999999999999999999999999999999999999999999999998
Q ss_pred cchhhHHhhhhhhccccccccccceeeeeccCCCcchhHhHHHHHHHHHHHHHHHHhhhhh---hHHHHHHH---HHHHH
Q psy11547 185 ILPWIFTGRILTGLGSGMVGAPSRIYTAECSQPHLRGMLSSLASFGVSLGVLFEYSLGAFL---SWDTVAAI---STIIP 258 (587)
Q Consensus 185 ~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l---~wr~~f~~---~~~~~ 258 (587)
.+.+.|++.|++.|..+ +...++..|+|+++|+++.++...+..+|.+++++++.++ +||+.+.+ .....
T Consensus 117 ---~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~s~gWr~y~~Ln~Isl~s~ 192 (511)
T TIGR00806 117 ---HMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLVTLGWISYSTLNIISLVFM 192 (511)
T ss_pred ---HHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence 99999999999999999 9999999999999999999999999999999999999988 88876544 33334
Q ss_pred HHHHHHhcccCCCchHHHhcCCHHHHHHHHHHHhCCCcchHHHHhhHHHHHHHHHHHhhhhhhHhHHhhhcCCchHHHHH
Q psy11547 259 VLSIIAGCLMPESPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQGLYEFSKRQETQKSRNFKETLAAIVEPACLKPFVI 338 (587)
Q Consensus 259 ~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (587)
.+.+++.+++|..++-+.-+.+.+.......+......+.. .+.....+......-..-..++....+++...+..++
T Consensus 193 ~~a~~~a~~LP~~~~sl~f~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~y~n~~vl~WSlW 270 (511)
T TIGR00806 193 TFSVFLALFLKRPKRSLFFNRLEDVRGALPCELDQMVPGPG--GKLEDYLGTCRDSFLVRMLSELVTIYRNPQLLLWSLW 270 (511)
T ss_pred HHHHHHHHhCCCCchhhhhccccccccccccccccCCCCCc--cccchhhhhhhhHHHHHHHHHHHHHhcCcchhhhhHH
Confidence 44555666788655533322221100000000000000000 0000000000000011123334444555554433333
Q ss_pred HHHHHHHHHhccchhhHhcHHHHHHhcCCCc--chHHHHHHHHHHHHHHHHhHHHhhcccCCchhhHhhhH--HHHHHHH
Q psy11547 339 LMLYFLIYQFSGVNPVTFYAVNIFKDAGAHV--NNNLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSI--GCGVSMT 414 (587)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~~~~~~~~~~~~~i~~~~~g~l~d~~g~~~~~~~~~~--~~~~~~~ 414 (587)
.....++++.+..|...+.++..-+. -.+..-.+..+.+.+.++..|++-.++.+-..+.++.+ +.+..++
T Consensus 271 -----wa~a~~g~~qv~~Y~Q~LW~~v~~~~~~yNG~veA~~tllga~~a~~ag~~~~~w~~~~~l~l~v~s~~~~gll~ 345 (511)
T TIGR00806 271 -----WVFNSAGYYLITYYVHTLWGTLDESLNKYNGAVDAASTLLGAITSFIAGFVNIRWARWSKLLIAVVSAIQAGLVF 345 (511)
T ss_pred -----HHHHhhHHHHHHHHHHHHHHHcCCCccccCCHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHhh
Confidence 33444467778888888887753321 22344555666677788888998665544223333322 2222222
Q ss_pred HHHHHHHhccCCCCCCCcCccchhHHHHHHHHHHHHHhccccccceeeeeccCCCCchhhHHHHHHHHHHHHHHHHHHh
Q psy11547 415 GLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKS 493 (587)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~~~~ 493 (587)
++.. ..+.|...+..+++...+.+.. ++...-+++....+.-|..+|+++++..+-..+...+
T Consensus 346 ~m~~---------------t~~Iw~~Y~~yvlf~~~y~fli-tia~~~iA~~L~~~~~aLvFGiNtfvAl~LQtilT~i 408 (511)
T TIGR00806 346 WMSQ---------------SHDIWVLYVTYVLFRGIYQFLV-PIATFQIASSLSKELCALVFGINTFVATALKTIITAV 408 (511)
T ss_pred hhhc---------------ccchHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcccceEEEEecHHHHHHHHHHheEEE
Confidence 2222 2456666666677776666554 3434566666777777999999888877666655543
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-24 Score=203.68 Aligned_cols=358 Identities=12% Similarity=0.073 Sum_probs=267.4
Q ss_pred HHHHHhhhhhhccccccHHHHHhhhcCCCCCccCcchhHHHHHHHHHHHHHHHHhHHHhhhccchhHHHHHhhHHHHHHH
Q psy11547 93 VFANLGNVNTGMVFGFSAAATSQLISRDSPYRITSDESTWIASLSAIGTMVGCVLGGYMMDLVGRKMTLIITEVPTILGW 172 (587)
Q Consensus 93 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~i~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~ 172 (587)
+.++...++.|+......+.+|++++. ++++..|.+++...++.|+.+++++.|++.+|+|+|+.+++|+.++++++
T Consensus 16 v~~t~lFfl~G~~~~l~diLip~l~~~---f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~ 92 (422)
T COG0738 16 VLLTSLFFLWGFITCLNDILIPHLKEV---FDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGA 92 (422)
T ss_pred HHHHHHHHHHHHHhhcchhhHHHHHHH---hCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 444455677788889999999999996 99999999999999999999999999999999999999999999999999
Q ss_pred HHHH---hcCCCCCCcchhhHHhhhhhhccccccccccceeeeeccCCCcchhHhHHHHHHHHHHHHHHHHhhhhh----
Q psy11547 173 ALIA---LAPSLPSSILPWIFTGRILTGLGSGMVGAPSRIYTAECSQPHLRGMLSSLASFGVSLGVLFEYSLGAFL---- 245 (587)
Q Consensus 173 ~~~~---~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l---- 245 (587)
.+.. ...+|. .++++-|+.|.|.+...+....++....++++..+.+++.+...++|.+++|+++..+
T Consensus 93 ~lF~pAa~~~~y~-----~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~ 167 (422)
T COG0738 93 ALFWPAASSKSYG-----FFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSG 167 (422)
T ss_pred HHHhhhhhhhhHH-----HHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhh
Confidence 9985 445666 8899999999999999999999999999998899999999999999999999999876
Q ss_pred -------------------hHHHHHHHHHHHHHHHHHHhcc--cCCCchHHHhcCCHHHHHHHHHHHhCCCcchHHHHhh
Q psy11547 246 -------------------SWDTVAAISTIIPVLSIIAGCL--MPESPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQG 304 (587)
Q Consensus 246 -------------------~wr~~f~~~~~~~~~~~~~~~~--~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (587)
.|+++|...+...+++.+.... .|+.+.- ..+
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k~p~~~~~-----~~~---------------------- 220 (422)
T COG0738 168 VALTMSAAQILAIKGADASSVQFPYLILAGLLVLLAVLILLSKLPDLQVA-----APS---------------------- 220 (422)
T ss_pred hhhccCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCCcCCcc-----ccc----------------------
Confidence 3788888887777766666554 4543210 000
Q ss_pred HHHHHHHHHHHhhhhhhHhHHhhhcCCchHHHHHHHHHHHHHHhccchhhHhcHHHHHHh-cCCC-cchHHHHHHHHHHH
Q psy11547 305 LYEFSKRQETQKSRNFKETLAAIVEPACLKPFVILMLYFLIYQFSGVNPVTFYAVNIFKD-AGAH-VNNNLAAVIMGIVR 382 (587)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~-~~~~~~~~~~~~~~ 382 (587)
..+.+.....+.++++..+...+..+++... -.....+.+.++.+ .|.+ .+.....+....+.
T Consensus 221 ----------~~~~~~~~~~~l~~~~~~~~gvl~~FlYVG~-----Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~ 285 (422)
T COG0738 221 ----------LGASGSAGLSSLFQNKHLRLGVLAIFLYVGA-----EVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGF 285 (422)
T ss_pred ----------ccccccchHHHHHhChHHHHHHHHHHHHHhH-----HHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHH
Confidence 0001111345566666554433333332222 33455666777777 6777 56678888889999
Q ss_pred HHHHHhHHHhhcccCCchhhHhhhHHHHHHHHHHHHHHHhccCCCCCCCcCccchhHHHHHHHHHHHHHhccccccceee
Q psy11547 383 LIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVM 462 (587)
Q Consensus 383 ~i~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (587)
++|++++.++..|+...+.+.+..++..+.++...+ ......+....+ .+.+.....|..++.
T Consensus 286 ~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~~~~l----------------~~g~v~~~~l~~-ig~F~simfPTIfsl 348 (422)
T COG0738 286 MVGRFIGSALMSRIKPEKYLAFYALIAILLLLAVAL----------------IGGVVALYALFL-IGLFNSIMFPTIFSL 348 (422)
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH----------------hcChHHHHHHHH-HHHHhHHHHHHHHHH
Confidence 999999999999999888887776665555555444 112233333333 344444555776788
Q ss_pred eeccCCCCchhhHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhHHHHHHHHHHHHHH
Q psy11547 463 IGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLTKEGTFLMYGCISLLGTI 519 (587)
Q Consensus 463 ~~~~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~ 519 (587)
..+..|. . ....|......-+|+++.|++.|++.|..|....+.....+|.+..+
T Consensus 349 al~~l~~-~-ts~~s~~l~maivGGAiiP~l~G~i~d~~g~~~~~~~~pllc~lyV~ 403 (422)
T COG0738 349 ALKNLGE-H-TSVGSGLLVMAIVGGAIIPPLQGVIADMFGIQLTFLIVPLLCYLYVL 403 (422)
T ss_pred HHhccCc-c-ccccceeeeeheecchHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 8888883 3 34445556677889999999999999999988777766666655553
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-24 Score=220.77 Aligned_cols=376 Identities=15% Similarity=0.151 Sum_probs=261.1
Q ss_pred CCchHHHHHHHHHHHHhhhhhhccccccHHHHHhhhcCCCCCccCcchhHHHHHHHHHHHHHHHHhHHHhhhccchhHHH
Q psy11547 82 GQKVSLSLTLAVFANLGNVNTGMVFGFSAAATSQLISRDSPYRITSDESTWIASLSAIGTMVGCVLGGYMMDLVGRKMTL 161 (587)
Q Consensus 82 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~i~s~~~l~~~i~~~~~g~l~dr~Grr~~l 161 (587)
.+..++.|..-++..++..+.... ++-+..+ ..-|+...+++..+..+...+.++++|.++||+.||+++
T Consensus 9 ~~~Fr~lw~a~~iS~lG~~~~~va-------~~wlv~~---lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrril 78 (524)
T PF05977_consen 9 NRNFRRLWIAQLISNLGDWMQTVA-------LAWLVTQ---LTGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRIL 78 (524)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHH-------HHHHHHH---HhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHH
Confidence 344454566666666665554433 3333332 455888999999999999999999999999999999999
Q ss_pred HHhhHHHHHHHHHHHhcCCCCCCcchhhHHhhhhhhccccccccccceeeeeccCCCcchhHhHHHHHHHHHHHHHHHHh
Q psy11547 162 IITEVPTILGWALIALAPSLPSSILPWIFTGRILTGLGSGMVGAPSRIYTAECSQPHLRGMLSSLASFGVSLGVLFEYSL 241 (587)
Q Consensus 162 ~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l 241 (587)
+.+.++.++..++.++.........+.+++.-++.|++.+...|+..+++.|.+|+++...++++.++..++..++||.+
T Consensus 79 i~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPal 158 (524)
T PF05977_consen 79 ILSQLLRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPAL 158 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchH
Confidence 99999887776665544222222344888999999999999999999999999999999999999999999999999999
Q ss_pred hhhh----hHHHHHHHHHHHHHHHHHHhcccCCCchHHHhcCCHHHHHHHHHHHhCCCcchHHHHhhHHHHHHHHHHHhh
Q psy11547 242 GAFL----SWDTVAAISTIIPVLSIIAGCLMPESPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQGLYEFSKRQETQKS 317 (587)
Q Consensus 242 ~~~l----~wr~~f~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (587)
++.+ |-.+.|.+.++..++.++....++..+.. +...++ + -.
T Consensus 159 gG~Lva~~G~~~~f~inalsfl~~i~~l~~~~~~~~~---~~~~~e--~-----------------------------~~ 204 (524)
T PF05977_consen 159 GGILVAFFGAAAAFLINALSFLISILALLRWKPPPPP---SSLPRE--R-----------------------------FF 204 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccc---cccchh--h-----------------------------hh
Confidence 9987 77888888877666554444333322100 000000 0 00
Q ss_pred hhhhHhHHhhhcCCchHHHHHHHHHHHHHHhccchhhHhcHHHHHHh-cCCC-cchHHHHHHHHHHHHHHHHhHHHhhcc
Q psy11547 318 RNFKETLAAIVEPACLKPFVILMLYFLIYQFSGVNPVTFYAVNIFKD-AGAH-VNNNLAAVIMGIVRLIFTIASCIMMKK 395 (587)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~-~~~~~~~~~~~~~~~i~~~~~g~l~d~ 395 (587)
...+.-.+..++.+..+..+....+..+ ....+...+|.+.++ .+.+ ..-++.....+++.++|+++.+++.+|
T Consensus 205 ~~l~~G~ryv~~~~~l~~~l~~~~~~~l----~~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~ 280 (524)
T PF05977_consen 205 SALREGLRYVRSSPPLRSVLLRSFLFNL----FASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRR 280 (524)
T ss_pred hhHHHHHHHHhcchHHHHHHHHHHHHHH----hhhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 0111122223322222222222211111 122233456766654 5555 444677888999999999999999999
Q ss_pred cCCchhhHhhhHHHHHHHHHHHHHHHhccCCCCCCCcCccchhHHHHHHHHHHHHHhccccccceeeeeccCCCCchhhH
Q psy11547 396 MGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIV 475 (587)
Q Consensus 396 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~ 475 (587)
+++++++..+.++.+++++.+++ ..+.+.....+++.+.+..... ....+.+.+..|++.||++
T Consensus 281 ~~~~~lv~~~~~~~a~~~~~lal---------------~~~~~~~~~~l~l~G~~~~~~~-~~~~t~~Q~~~P~~~~GRv 344 (524)
T PF05977_consen 281 LSSRRLVLLASLLFALALLLLAL---------------SPSFWLALIALFLAGAAWIIAN-SSLNTLVQLSVPDWVRGRV 344 (524)
T ss_pred cCcchhhHHHHHHHHHHHHHHhc---------------chHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCHHHHhHH
Confidence 99988888888887777776665 2234444444444444444333 3345788999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHhhhhhhHHHHHHHHHHHHHHHh
Q psy11547 476 GGLTTCACHFFIFLTVKSYNMFQTHLTKEGTFLMYGCISLLGTIFF 521 (587)
Q Consensus 476 ~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~ 521 (587)
+++..++...+..+|..+.|.+.+..|...++.+.+++.+++.++.
T Consensus 345 ~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~ 390 (524)
T PF05977_consen 345 FSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIA 390 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999888877666555555544
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >KOG3764|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=4e-27 Score=217.88 Aligned_cols=373 Identities=14% Similarity=0.094 Sum_probs=266.5
Q ss_pred HHHHHHHHhhhhhhccccccHHHHHhhhcC-----------------------------------------------CCC
Q psy11547 90 TLAVFANLGNVNTGMVFGFSAAATSQLISR-----------------------------------------------DSP 122 (587)
Q Consensus 90 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-----------------------------------------------~~~ 122 (587)
.++.+++++.+.+.+....+.|.+|.+..+ ..+
T Consensus 21 lilviv~ialllDnmL~~vivPiiP~~L~d~~~~p~~~~~~~~is~~~~~~~~~~~~~~~~~~~~~t~a~~~~~~~~~~~ 100 (464)
T KOG3764|consen 21 LILVIVSIALLLDNMLYTVIVPIIPGYLYDIQAEPTIIQPFFPISTAPIPPGSMSSFSSLNISTESTNASAGKSPAEAIS 100 (464)
T ss_pred eEEEEEehhhhccCccceeeeccCccHHHHhccCCccCccccccccCCCCCccccceecccCCccccccccccCchhccC
Confidence 445566677777777777777777755332 124
Q ss_pred CccCcchhHHHHHHHHHHHHHHHHhHHHhhhccchhHHHHHhhHHHHHHHHHHHhcCCCCCCcchhhHHhhhhhhccccc
Q psy11547 123 YRITSDESTWIASLSAIGTMVGCVLGGYMMDLVGRKMTLIITEVPTILGWALIALAPSLPSSILPWIFTGRILTGLGSGM 202 (587)
Q Consensus 123 ~~~s~~~~g~i~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~ 202 (587)
.+-+++++|++.+++.+.+.+..++.|.+.||+|+|..|++|++++..+++++++..+++ .++++|.+||+|.+.
T Consensus 101 ~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~-----~l~vAR~LQgvgsA~ 175 (464)
T KOG3764|consen 101 LDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYP-----MLFVARSLQGVGSAF 175 (464)
T ss_pred ccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhH-----HHHHHHHHhhhhHHH
Confidence 556678999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred cccccceeeeeccCCCc-chhHhHHHHHHHHHHHHHHHHhhhhh----hHHHHHHHHHHHHHHHHHHhcccCCCchHHHh
Q psy11547 203 VGAPSRIYTAECSQPHL-RGMLSSLASFGVSLGVLFEYSLGAFL----SWDTVAAISTIIPVLSIIAGCLMPESPSWLLS 277 (587)
Q Consensus 203 ~~~~~~~~i~e~~~~~~-r~~~~~~~~~~~~~G~~i~~~l~~~l----~wr~~f~~~~~~~~~~~~~~~~~~esp~~~~~ 277 (587)
..++..++++|.+|+++ |++++|+.-.+.++|.++||++|+.+ |.+.+|++.+++.++-..+.+++-|..+
T Consensus 176 ~~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~---- 251 (464)
T KOG3764|consen 176 ADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTE---- 251 (464)
T ss_pred HHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCccc----
Confidence 99999999999998765 79999999999999999999999998 9999999999999998888777433210
Q ss_pred cCCHHHHHHHHHHHhCCCcchHHHHhhHHHHHHHHHHHhhhhhhHhHHhhhcCCchHHHHHHHHHHHHHHhccchhhHhc
Q psy11547 278 QGRKDACRNSLRRLRANNYDVEKEVQGLYEFSKRQETQKSRNFKETLAAIVEPACLKPFVILMLYFLIYQFSGVNPVTFY 357 (587)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (587)
.+. +...+....+++++++..+..... ......+....--.
T Consensus 252 -~~~---------------------------------~~~~~~~~~~~Ll~dP~I~~~aga-----i~~~n~~lafLePt 292 (464)
T KOG3764|consen 252 -MDP---------------------------------DSTEQGTPMWSLLMDPYILLIAGA-----ITFSNSSLAFLEPT 292 (464)
T ss_pred -cCc---------------------------------cccccCccHHHHHhCchHhhhhcc-----hhhccchHHHhCcc
Confidence 000 011223446677777654322211 11111112222222
Q ss_pred HHH-HHHhcCCC-cchHHHHHHHHHHHHHHHHhHHHhhcccCCchhhH--hhhHHHHHHHHHHHHHHHhccCCCCCCCcC
Q psy11547 358 AVN-IFKDAGAH-VNNNLAAVIMGIVRLIFTIASCIMMKKMGRRSLTF--ISSIGCGVSMTGLGLYIFATKDFWPEYKFP 433 (587)
Q Consensus 358 ~~~-~~~~~g~~-~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (587)
++. +.++...+ ...+...+...+...++..+.|.+.||++..+.+. .+.+..+++.....++...
T Consensus 293 lslwm~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~~~~----------- 361 (464)
T KOG3764|consen 293 LSLWMLETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFATSI----------- 361 (464)
T ss_pred cHHHHHHhccCCCcceeeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhhhhH-----------
Confidence 333 33444433 35667777888899999999999999999433322 2333333333222221111
Q ss_pred ccchhHHHHHHHHHHHHHhccccccceeeeeccCCCC---chhhHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhHHHHH
Q psy11547 434 AFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTK---VRGIVGGLTTCACHFFIFLTVKSYNMFQTHLTKEGTFLMY 510 (587)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~---~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~ 510 (587)
...|.....+.+.+........|.. .+..+.-..+ ..|...++......+|.++||.+.|.+.+..|+.|...+.
T Consensus 362 -~~L~vp~~~l~~~i~~~dasl~P~l-~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~iGF~wl~~ii 439 (464)
T KOG3764|consen 362 -AQLWVPNFGLGFGIGLADASLIPTL-GYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAIGFEWLMTII 439 (464)
T ss_pred -HHHhhhhHHHHHHHHHHHHHHhhhh-HHhcchhhccccceeeeHHHHHHHHHHHhhhccccccchheeehhHHHHHHHH
Confidence 1122333333333333444444553 4555554444 6789999999999999999999999999999999998888
Q ss_pred HHHHHHHHHHhhe
Q psy11547 511 GCISLLGTIFFYV 523 (587)
Q Consensus 511 ~~~~~~~~~~~~~ 523 (587)
+...++..-++.+
T Consensus 440 g~~n~iyapvl~l 452 (464)
T KOG3764|consen 440 GILNLIYAPVLLL 452 (464)
T ss_pred HHHHHHHHHHHHH
Confidence 8888877665443
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.7e-24 Score=220.43 Aligned_cols=329 Identities=18% Similarity=0.139 Sum_probs=218.3
Q ss_pred CCccCcchhHHHHHHHHHHHHHHHHhHHHhhhc----cch-hHHHHHhhHHHHHHHHHHHhcCCCCCCc-chhhHHhhhh
Q psy11547 122 PYRITSDESTWIASLSAIGTMVGCVLGGYMMDL----VGR-KMTLIITEVPTILGWALIALAPSLPSSI-LPWIFTGRIL 195 (587)
Q Consensus 122 ~~~~s~~~~g~i~s~~~l~~~i~~~~~g~l~dr----~Gr-r~~l~~~~~~~~i~~~~~~~~~~~~~~~-~~~l~~~r~l 195 (587)
++|+++.++|++.++..+..++..++.|+++|| +|| |+.++.+.+..+++.+++.+.++..... .+.+++.+++
T Consensus 29 ~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (437)
T TIGR00792 29 VLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKLVYAYITYIL 108 (437)
T ss_pred ccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHH
Confidence 489999999999999999999999999999997 787 4578888889998988888877653211 2356778889
Q ss_pred hhccccccccccceeeeecc-CCCcchhHhHHHHHHHHHHHHHHHHhhhhh-----------hHHHHHHHHHHHHHHHHH
Q psy11547 196 TGLGSGMVGAPSRIYTAECS-QPHLRGMLSSLASFGVSLGVLFEYSLGAFL-----------SWDTVAAISTIIPVLSII 263 (587)
Q Consensus 196 ~G~~~g~~~~~~~~~i~e~~-~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l-----------~wr~~f~~~~~~~~~~~~ 263 (587)
.+++.+...+...++..|.. ++++|++..++.+.+..+|.++++.+...+ +||+.+.+.++++++..+
T Consensus 109 ~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~~~~~~ 188 (437)
T TIGR00792 109 LGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALIGVVSLI 188 (437)
T ss_pred HHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHHHH
Confidence 99988888788888888987 468899999999888888876665443222 799999999988877766
Q ss_pred Hhcc-cCCCchHHHhcCCHHHHHHHHHHHhCCCcchHHHHhhHHHHHHHHHHHhhhhhhHhHHhhhcCCchHHHHHHHHH
Q psy11547 264 AGCL-MPESPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQGLYEFSKRQETQKSRNFKETLAAIVEPACLKPFVILMLY 342 (587)
Q Consensus 264 ~~~~-~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (587)
+.++ ++|.++.. +.++ +++....+..+..++++.++......++.
T Consensus 189 ~~~~~~~e~~~~~----~~~~------------------------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 234 (437)
T TIGR00792 189 ICFFGTKERYSEI----PKNI------------------------------EKKLSLKQIFKALFKNDQLLILCLAYLFY 234 (437)
T ss_pred HHHcCCEecCCCC----Cccc------------------------------ccCCCHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 5544 77754110 0000 00001112233344454433322222221
Q ss_pred HHHHHhccchhhHhcHHHHHHh-cCCCcchHHHHHHHHHHHHHHHHhHHHhhcccCCchhhHhhhHHHHHHHHHHHHHHH
Q psy11547 343 FLIYQFSGVNPVTFYAVNIFKD-AGAHVNNNLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIF 421 (587)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~ 421 (587)
... ......+.+++.+. .+.....+....+..++.+++.++.+++.||+|+|+.+..+.++.+++.+.+.+..
T Consensus 235 ~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~- 308 (437)
T TIGR00792 235 NLA-----FNIKNGVQVYYFTYVLGDPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAG- 308 (437)
T ss_pred HHH-----HHHHcchhheeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcc-
Confidence 111 22222233333332 22222334555666788899999999999999999998888877776665554311
Q ss_pred hccCCCCCCCcCccchhHHHHHHHHHHHHHhccccccceeeeeccCC-------CCchhhHHHHHHHHHHHHHHHHHHhh
Q psy11547 422 ATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYP-------TKVRGIVGGLTTCACHFFIFLTVKSY 494 (587)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~r~~~~g~~~~~~~~g~~i~~~~~ 494 (587)
...+...+...+.+.+.+.. .+..+++++|..+ ++.+|.+.|+.++...+|..+++.+.
T Consensus 309 -------------~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~ 374 (437)
T TIGR00792 309 -------------SNLPLILVLIILAGFGQNFV-TGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLV 374 (437)
T ss_pred -------------hhHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 11222222323333333222 3444567777654 55679999999999999999999999
Q ss_pred HHHHHhhhhh
Q psy11547 495 NMFQTHLTKE 504 (587)
Q Consensus 495 g~l~~~~g~~ 504 (587)
|.+.+..|+.
T Consensus 375 g~ll~~~G~~ 384 (437)
T TIGR00792 375 GLILGIIGYV 384 (437)
T ss_pred HHHHHHcCCC
Confidence 9999887763
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >KOG2504|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.1e-26 Score=229.73 Aligned_cols=401 Identities=17% Similarity=0.204 Sum_probs=274.8
Q ss_pred HHHHHHHHHHhhhhhhccccccHHHHHhhhcCCCCCccCcchhHHHHHHHHHHHHHHHHhHHHhhhccchhHHHHHhhHH
Q psy11547 88 SLTLAVFANLGNVNTGMVFGFSAAATSQLISRDSPYRITSDESTWIASLSAIGTMVGCVLGGYMMDLVGRKMTLIITEVP 167 (587)
Q Consensus 88 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~i~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~ 167 (587)
-|.+++..++..+...-.....+...+.+.++ ++.+.++++|+.++......+.+++.+.+.||||.|++.++|.++
T Consensus 44 gWvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~---f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v 120 (509)
T KOG2504|consen 44 GWVVVFASFLVNLSTDGLINSFGLLFEELMDY---FGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLV 120 (509)
T ss_pred eeeeeHhHHHHHHhhhcchheehhhHHHHHHH---hCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHH
Confidence 34455555444433332333344677788875 899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCcchhhH-HhhhhhhccccccccccceeeeeccCCCcchhHhHHHHHHHHHHHHHHHHhhhhh-
Q psy11547 168 TILGWALIALAPSLPSSILPWIF-TGRILTGLGSGMVGAPSRIYTAECSQPHLRGMLSSLASFGVSLGVLFEYSLGAFL- 245 (587)
Q Consensus 168 ~~i~~~~~~~~~~~~~~~~~~l~-~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l- 245 (587)
.+++.++.+++++++ .++ ..-++.|+|.|..+..+..++..+|++ +|+.+.|+...+.++|.++-|.+..++
T Consensus 121 ~~~g~~lssF~~~i~-----~l~lt~gvi~G~G~~~~~~paiviv~~YF~k-kR~lA~Gia~~GsG~G~~~~~~l~~~l~ 194 (509)
T KOG2504|consen 121 AALGLLLSSFATSLW-----QLYLTFGVIGGLGLGLIYLPAVVILGTYFEK-KRALATGIAVSGTGVGTVVFPPLLKYLL 194 (509)
T ss_pred HHHHHHHHHHHhhHH-----HHHHHHHHHhhccchhhhcchhhhhhhHhHH-HHHHHHhhhhccCCcceeeHHHHHHHHH
Confidence 999999999999998 555 579999999999999999999988865 599999999999999999999988887
Q ss_pred ---hHHHHHHHHHHHHHHHHHHhccc-CCCchHHHhcCCHHHHHHHHHHHh--------C----CCcchHH-HHhhHHHH
Q psy11547 246 ---SWDTVAAISTIIPVLSIIAGCLM-PESPSWLLSQGRKDACRNSLRRLR--------A----NNYDVEK-EVQGLYEF 308 (587)
Q Consensus 246 ---~wr~~f~~~~~~~~~~~~~~~~~-~esp~~~~~~~~~~~~~~~~~~~~--------~----~~~~~~~-~~~~~~~~ 308 (587)
|||+.+++.+.+.+-.++....+ |.++..... .++..+...... . .+..... ........
T Consensus 195 ~~~G~r~~~l~~~~~~l~~~~~~~~~rp~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (509)
T KOG2504|consen 195 SKYGWRGALLIFGGISLNVLVAGALLRPLSPPKKPN---EEKDLRNSAASVESTPKPVELRISERDSGLKKLSLSNLATL 271 (509)
T ss_pred HHhCcHHHHHHHHHHHHHHHHHHHHcCCCCcCCCch---hhhhhccccccccccccccccccccCCCCCCcccccchhhh
Confidence 99999999888887666655553 322211000 000000000000 0 0000000 00000000
Q ss_pred HHHHHHHh-hhhhhHh----HHhhhcCCchHHHHHHHHHHHHHHhccchhhHhcHHHHHHhcCCC-cchHHHHHHHHHHH
Q psy11547 309 SKRQETQK-SRNFKET----LAAIVEPACLKPFVILMLYFLIYQFSGVNPVTFYAVNIFKDAGAH-VNNNLAAVIMGIVR 382 (587)
Q Consensus 309 ~~~~~~~~-~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~ 382 (587)
....++.. ...+... .++++++ .++...+...+...++.....+++.+.+..+++ .+......+.++..
T Consensus 272 ~~~~~~~~~~~~~~~~~~~d~~ll~~~-----~fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~ 346 (509)
T KOG2504|consen 272 KRGPDKWRNSPLQAFLSMLDLSLLKDP-----KFLLLALSNLFAYLGFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSD 346 (509)
T ss_pred hhCCccccccchhhhhhhhhHHHHcCc-----hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhh
Confidence 00000000 0111111 3455553 344555555555556777888889999999888 67788999999999
Q ss_pred HHHHHhHHHhhcccCC--chhhHhhhHHHHHHHHHHHHHHHhccCCCCCCCcCccchhHHHHHHHHHHHHHhccccccce
Q psy11547 383 LIFTIASCIMMKKMGR--RSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPW 460 (587)
Q Consensus 383 ~i~~~~~g~l~d~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (587)
++++++.|++.|+... +.+..++.++.+++.+.+.. ...+..+....++.+.....+..+..
T Consensus 347 i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~----------------~~~~~~l~~~~~~fG~~~g~~~~l~~ 410 (509)
T KOG2504|consen 347 IIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFLPF----------------ATTYVGLIVFSILFGFCVGSFSSLTP 410 (509)
T ss_pred hhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHH----------------hccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999884 34444555555555533333 12233333333333333333444444
Q ss_pred eeeeccCCCCchhhHHHHHHHHHHHHHHHHHHhhHHHHHhhh-hhhHHHHHHHHHHHHHHHh
Q psy11547 461 VMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLT-KEGTFLMYGCISLLGTIFF 521 (587)
Q Consensus 461 ~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~ 521 (587)
..+.|+.+.+.-..+.|+...+..++..+||++.|.+.|..| |...|+..+++.+++.++.
T Consensus 411 ~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~ 472 (509)
T KOG2504|consen 411 VILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLL 472 (509)
T ss_pred HHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHHH
Confidence 678899999999999999999999999999999999999988 7778887777777766543
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=4e-24 Score=218.70 Aligned_cols=402 Identities=10% Similarity=0.071 Sum_probs=235.5
Q ss_pred hccccccHHHHHhhhcCCCCCccCcchhHHHHHHHHHHHHHHHHhHHHhhhc-cchhHHHHHhhHHHHHHHHHHHhcCCC
Q psy11547 103 GMVFGFSAAATSQLISRDSPYRITSDESTWIASLSAIGTMVGCVLGGYMMDL-VGRKMTLIITEVPTILGWALIALAPSL 181 (587)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~i~s~~~l~~~i~~~~~g~l~dr-~Grr~~l~~~~~~~~i~~~~~~~~~~~ 181 (587)
.+......+.++.+..+ ++|++..+.+++.+.+.....+..+++|+++|| +||||+++++.+++++++++++++.+.
T Consensus 27 r~~~y~~~~~l~~yl~~--~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~~~ 104 (489)
T PRK10207 27 RFGYYGVQGILAVFFVK--QLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSLLK 104 (489)
T ss_pred HHHHHHHHHHHHHHHHH--HcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhccc
Confidence 33333333444444332 499999999999999999999999999999999 999999999999999999999998775
Q ss_pred CCCcchhhHHhhhhhhccccccccccceeeeeccCCC--cchhHhHHHHHHHHHHHHHHHHhhhhh----hHHHHHHHHH
Q psy11547 182 PSSILPWIFTGRILTGLGSGMVGAPSRIYTAECSQPH--LRGMLSSLASFGVSLGVLFEYSLGAFL----SWDTVAAIST 255 (587)
Q Consensus 182 ~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~--~r~~~~~~~~~~~~~G~~i~~~l~~~l----~wr~~f~~~~ 255 (587)
.. .++++|+++|+|.|...+...+++.|++|++ +|+++++++..+.++|.++||.+++++ |||+.|++.+
T Consensus 105 ~~----ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~ 180 (489)
T PRK10207 105 PD----LIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCG 180 (489)
T ss_pred hh----HHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHH
Confidence 50 3558999999999999999999999999877 457799999999999999999999988 9999999975
Q ss_pred HHHHHHHHHhcccCCCchHHH--hcCCHHHHHHHHH----------H--HhCCCcchHHHHhhHHHHHH---HHHHHhhh
Q psy11547 256 IIPVLSIIAGCLMPESPSWLL--SQGRKDACRNSLR----------R--LRANNYDVEKEVQGLYEFSK---RQETQKSR 318 (587)
Q Consensus 256 ~~~~~~~~~~~~~~esp~~~~--~~~~~~~~~~~~~----------~--~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 318 (587)
+..++.++...+.++..+... .+++..+...... . .................... -..++.+.
T Consensus 181 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~~~ 260 (489)
T PRK10207 181 AGLIIALLVYFACRGMVKDIGSEPDHKPMSFSKLLLVLLGSVVMIFVCAWLMHNVEVANLVLIVLSIVVTIIFFREAFKL 260 (489)
T ss_pred HHHHHHHHHHHHcchhhcccCCCCCccchhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 543333333333332111000 0011011000000 0 00000000000000000000 00000000
Q ss_pred hhhHhHHhhhcCCchHHHHHHHHHHHHHHhccchhhHhcHHHHHHh------cCCCcchHHHHHHHHHHHHHHHHhHHHh
Q psy11547 319 NFKETLAAIVEPACLKPFVILMLYFLIYQFSGVNPVTFYAVNIFKD------AGAHVNNNLAAVIMGIVRLIFTIASCIM 392 (587)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~~~~~~~i~~~~~g~l 392 (587)
+ +..+++.+....+ +......+..+....+..+.+.++ .|+...+.....+..+..++.+++.+++
T Consensus 261 ~-----~~~r~r~~~~~~l---~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii~~pl~~~l 332 (489)
T PRK10207 261 D-----KTGRNKMFVAFVL---MLEAVVFYILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVVASPILAGI 332 (489)
T ss_pred C-----HHHHHHHHHHHHH---HHHHHHHHHHHHHcccHHHHHHHHhccccccceEECHHHHHhHhHHHHHHHHHHHHHH
Confidence 0 1222221111110 100111111122222333333332 1333334455555666777888888999
Q ss_pred hcccCCchh-------hHhhhHHHHHHHHHHHHHHHhccCCCCCCCcCccchhHHHHHHHHHHHHHhccccccceeeeec
Q psy11547 393 MKKMGRRSL-------TFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGE 465 (587)
Q Consensus 393 ~d~~g~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (587)
.||+++|+. +.+++++.+++.+.+........... ...+.++.+ ...++.+.......+...+++.+
T Consensus 333 ~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~-----~~~s~~~~i-~~~~l~g~Ge~~~~~~g~~~~~~ 406 (489)
T PRK10207 333 YTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQ-----GLTSPWFIV-LVYLFQSLGELFISALGLAMIAA 406 (489)
T ss_pred HHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-----CccCHHHHH-HHHHHHHHHHHHHhHHHHHHHHH
Confidence 999998863 66777777766654432111100000 011233333 33333444444455665688889
Q ss_pred cCCCCchhhHHHHHHHHHHHHHHHHHHhhHHHHH----------hhhhhhHHHHHHHHHHHHHHHhhee
Q psy11547 466 VYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQT----------HLTKEGTFLMYGCISLLGTIFFYVY 524 (587)
Q Consensus 466 ~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~----------~~g~~~~~~~~~~~~~~~~~~~~~~ 524 (587)
..|++.++.++|+.+....+|+.++..+...... ...+.+.|...++.++++.++.++.
T Consensus 407 ~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~v~~~~~ 475 (489)
T PRK10207 407 LVPQHLMGFILGMWFLTQAAAFLLGGYVATFTAVPDNITDPLETLPVYTNVFGKIGLVTLGVAVVMALM 475 (489)
T ss_pred hChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999877754421 1123456666666666665554443
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-23 Score=215.10 Aligned_cols=408 Identities=11% Similarity=0.037 Sum_probs=249.2
Q ss_pred hhhhhccccccHHHHHhhhcCCCCCccCcchhHHHHHHHHHHHHHHHHhHHHhhhc-cchhHHHHHhhHHHHHHHHHHHh
Q psy11547 99 NVNTGMVFGFSAAATSQLISRDSPYRITSDESTWIASLSAIGTMVGCVLGGYMMDL-VGRKMTLIITEVPTILGWALIAL 177 (587)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~i~s~~~l~~~i~~~~~g~l~dr-~Grr~~l~~~~~~~~i~~~~~~~ 177 (587)
.+...+......+.+|.+..+..++|++..+.|++.+.+.++..++++++|+++|| +|||+++.++.++.+++.++.++
T Consensus 19 ~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~ 98 (475)
T TIGR00924 19 ELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAM 98 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHh
Confidence 33344444445566777665422389999999999999999999999999999999 89999999999999999999999
Q ss_pred cCCCCCCcchhhHHhhhhhhccccccccccceeeeeccCCCc---chhHhHHHHHHHHHHHHHHHHhhhhh----hHHHH
Q psy11547 178 APSLPSSILPWIFTGRILTGLGSGMVGAPSRIYTAECSQPHL---RGMLSSLASFGVSLGVLFEYSLGAFL----SWDTV 250 (587)
Q Consensus 178 ~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~---r~~~~~~~~~~~~~G~~i~~~l~~~l----~wr~~ 250 (587)
+++++ .++++|++.|+|.|...+...++++|++|+++ |+.+++++..+.++|.++||.+++++ +|++.
T Consensus 99 ~~~~~-----~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~ 173 (475)
T TIGR00924 99 SIYPD-----LIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVG 173 (475)
T ss_pred cccHh-----HHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHH
Confidence 98887 88899999999999999999999999998764 88899999999999999999999987 89999
Q ss_pred HHHHHHHHHHHHHHhcccC----CCchHHHhcCCHHHHHHHHHH--------------HhCCCcchHHHHhh---HHHHH
Q psy11547 251 AAISTIIPVLSIIAGCLMP----ESPSWLLSQGRKDACRNSLRR--------------LRANNYDVEKEVQG---LYEFS 309 (587)
Q Consensus 251 f~~~~~~~~~~~~~~~~~~----esp~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~---~~~~~ 309 (587)
|++.++..++..+..++.+ +.|+.. .+.+.++....... ....+......... .....
T Consensus 174 f~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (475)
T TIGR00924 174 FNLAAVGMVIGLLTFFAGRHMLRDIGSVP-DPLSGQGKTYGKLLLALLAALALVFFCAWLMHHVVIANILLMTVTLAVII 252 (475)
T ss_pred HHHHHHHHHHHHHHHHHcccccccCCCCC-CCcchhhhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 9998765555444333322 222100 00000100000000 00000000000000 00000
Q ss_pred HHHHHHhhhhhhHhHHhhhcCCchHHHHHHHHHHHHHHhccchhhHhcHHHHHHh-c-----CCCcchHHHHHHHHHHHH
Q psy11547 310 KRQETQKSRNFKETLAAIVEPACLKPFVILMLYFLIYQFSGVNPVTFYAVNIFKD-A-----GAHVNNNLAAVIMGIVRL 383 (587)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----g~~~~~~~~~~~~~~~~~ 383 (587)
.......+ + ...+.-+++ . .. ++.++......+..+.......+.+.++ . ++.........+.++..+
T Consensus 253 ~~~~~~~~-~--~~~~~~~~~-~-~~-~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~ii 326 (475)
T TIGR00924 253 FFFRLAFK-P--RLDAVARNK-M-YA-YIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVV 326 (475)
T ss_pred HHHHHHHh-c--cCCHHHHhH-H-HH-HHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHH
Confidence 00000000 0 000000011 0 11 1111111111111222223323333333 1 122235566677777766
Q ss_pred HHHHhHHH----hhcc-cCCchhh--HhhhHHHHHHHHHHHHHHHhccCCCCCCCcCccchhHHHHHHHHHHHHHhcccc
Q psy11547 384 IFTIASCI----MMKK-MGRRSLT--FISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYL 456 (587)
Q Consensus 384 i~~~~~g~----l~d~-~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (587)
+..++..+ +.+| .+.+... .++.++.+++.+.+++.....++. ...+..+.+...++.........
T Consensus 327 l~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~-------~~~s~~~~i~~~~~~~~ge~~~~ 399 (475)
T TIGR00924 327 VGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFADAG-------GLTSPWFMVLIYLFQTLGELMIS 399 (475)
T ss_pred HHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCC-------CccCHHHHHHHHHHHHHHHHHHh
Confidence 66666544 3443 2223333 667777777776665432221110 11233344444445555555666
Q ss_pred ccceeeeeccCCCCchhhHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhHHHHHHHHHHHHHHHhheec
Q psy11547 457 VVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLTKEGTFLMYGCISLLGTIFFYVYL 525 (587)
Q Consensus 457 ~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 525 (587)
|...+++.+..|++.||+.+|+......+|..+++.+.....+..++...|...++++++..++.++..
T Consensus 400 p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (475)
T TIGR00924 400 PLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMALMV 468 (475)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 777799999999999999999999999999999999888777776777777777776666666554443
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.6e-23 Score=213.54 Aligned_cols=387 Identities=13% Similarity=0.089 Sum_probs=244.0
Q ss_pred HHHHhhhcCCCCCccCcchhHHHHHHHHHHHHHHHHhHHHhhhccchhHHHHHhhHHHHHHHHHHHhc------CCCCCC
Q psy11547 111 AATSQLISRDSPYRITSDESTWIASLSAIGTMVGCVLGGYMMDLVGRKMTLIITEVPTILGWALIALA------PSLPSS 184 (587)
Q Consensus 111 ~~~~~~~~~~~~~~~s~~~~g~i~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~------~~~~~~ 184 (587)
...|.+.++ +|+|..+++++.++. ....+++++.|+++||+|||++++++.+++++++++++++ ++++
T Consensus 48 v~s~~L~~~---lgls~~~l~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~-- 121 (591)
T PTZ00207 48 LISGAMQAR---YNLTQRDLSTITTVG-IAVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVV-- 121 (591)
T ss_pred HHHHHHHHH---hCcCHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHH--
Confidence 556677774 999999999998874 4556778899999999999999999999999999999997 4666
Q ss_pred cchhhHHhhhhhhccccccccccceeeeeccCCCcchhHhHHHHHHHHHHHHH-HHHhhhhh--hHHHHHHHHHHHHHHH
Q psy11547 185 ILPWIFTGRILTGLGSGMVGAPSRIYTAECSQPHLRGMLSSLASFGVSLGVLF-EYSLGAFL--SWDTVAAISTIIPVLS 261 (587)
Q Consensus 185 ~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i-~~~l~~~l--~wr~~f~~~~~~~~~~ 261 (587)
.+.+.|++.|+|.+...+.....+.+|+| ++||++.++...+.++|.++ +++...++ +|+..|++.++++++.
T Consensus 122 ---~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~~~~~~fl~l~vl~~vv 197 (591)
T PTZ00207 122 ---RLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFSDNTSAYFFFLMSFALVV 197 (591)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 89999999999999888989999999997 67999999999999999975 55555555 8999999888887776
Q ss_pred HHHhcc---cCCCchHHHhcCCHHHHHHHHHHHhCC--------------------------------------CcchHH
Q psy11547 262 IIAGCL---MPESPSWLLSQGRKDACRNSLRRLRAN--------------------------------------NYDVEK 300 (587)
Q Consensus 262 ~~~~~~---~~esp~~~~~~~~~~~~~~~~~~~~~~--------------------------------------~~~~~~ 300 (587)
.++.+. .|+.|++..++++.++.++..++..+. +.....
T Consensus 198 ~ll~~~~vr~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~q~~p~~~f~~~~~i~~~l~~yl~~~~~~~~~~~~~~~~~~ 277 (591)
T PTZ00207 198 GILAIVFMRLPPFHLTGYQEKHLDEEEKAQRLMRKGVYLKQKAPMWRFVYGFVILIILIVFLPLQGALVAYLKLGSNFKV 277 (591)
T ss_pred HHHHHhheeCCcchhhcccccCCCHHHHHHHhhhhhhhhhcCCCceehhhHHHHHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 555443 344444433332222222221111100 000000
Q ss_pred HHhh--H-----------------------------HHHHH-H---HHHH--------h---hhhhhHhHHhhhcCCchH
Q psy11547 301 EVQG--L-----------------------------YEFSK-R---QETQ--------K---SRNFKETLAAIVEPACLK 334 (587)
Q Consensus 301 ~~~~--~-----------------------------~~~~~-~---~~~~--------~---~~~~~~~~~~~~~~~~~~ 334 (587)
.... . .+..+ . .+.+ + .+...++++.+++..
T Consensus 278 ~~~~v~~~lll~~p~l~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~t~~q~l~~~d--- 354 (591)
T PTZ00207 278 GFAVTVIVLTVIFPFMAFPLTTFDGKRPHDDSDGKAKEHVEAGEEVSAAEDKVVETDVDYIAPQFQETFIEGLKTAR--- 354 (591)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHhccCCcCCCccccccccccccccccccccccccccccCCCCCCcchHHHHHhchh---
Confidence 0000 0 00000 0 0000 0 000013334443333
Q ss_pred HHHHHHHHHHHHHhccchhhHhcHHHHHHhc-CCCcch--HH-HHHHHHHHHHHHHHhHHHhhc----cc-----CCchh
Q psy11547 335 PFVILMLYFLIYQFSGVNPVTFYAVNIFKDA-GAHVNN--NL-AAVIMGIVRLIFTIASCIMMK----KM-----GRRSL 401 (587)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~--~~-~~~~~~~~~~i~~~~~g~l~d----~~-----g~~~~ 401 (587)
+++.++..++.......+...+..+.+.. |.+.+. .. ...+.++.+.+|++.+|++.. |. .|--.
T Consensus 355 --~Wll~~~~~cg~g~gl~~~~N~~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~~~~~~~~~~~r~prt~~ 432 (591)
T PTZ00207 355 --LWCLLWSIFCCVGAHFVIIFNARFIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFEIWSQKRRAEDRVPITIA 432 (591)
T ss_pred --HHHHHHHHHHhhCchheeeecHHHHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHHHHHHhhccccccchhHH
Confidence 33333334444444445566677777776 763222 22 678889999999999998872 21 11112
Q ss_pred hHhhhHHHHHHHHHHHHHHHhccCCCCCCCcCccchhHHHHHHHHHHHHHhccccccceeeeeccCCCCchhhHHHHHHH
Q psy11547 402 TFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTC 481 (587)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~ 481 (587)
+.+..+ +.++.+++... .+.....+..++.+.+.+..+ ++....++|+|. +.-|+-.-+...
T Consensus 433 l~~~~~-~~~~~lll~~~---------------~p~~~L~~~~~lvg~~~G~~~-~~~~~i~selFg-k~~g~~yN~~~~ 494 (591)
T PTZ00207 433 LFIPSV-CIITMLTLFLT---------------LPKAALPLPYFIAAFANGFMA-ATIALVTRTIFA-KDPAKHYNFCFL 494 (591)
T ss_pred HHHHHH-HHHHHHHHHHH---------------CCccHhHHHHHHHHHHhhHhH-HHHHHHHHHHhc-cchHHHhhHHhH
Confidence 222223 44444444431 111233444445555555544 344488999999 776887777777
Q ss_pred HHHHHHHHH-HHhhHHHHHhhh-------------hhhHHHHHHHHHHHHHHHhheecccCCC
Q psy11547 482 ACHFFIFLT-VKSYNMFQTHLT-------------KEGTFLMYGCISLLGTIFFYVYLPETKN 530 (587)
Q Consensus 482 ~~~~g~~i~-~~~~g~l~~~~g-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 530 (587)
..-+|+.+. ..++|.++|... ++.+|++.+++++++.+....+..++++
T Consensus 495 a~pigs~~~n~~l~G~~Yd~ea~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~~l~~R~r~ 557 (591)
T PTZ00207 495 GSVLSAIFLNRLLYGEWYTQQADKLGQDVCTERVCVVMPLAFLLGLSFLAFITSTYVHLQYRR 557 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCCceeeHhHHHHHHHHHHHHHHHHhheeeehHH
Confidence 777777776 557888887643 4568899999999988887666555553
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.8e-24 Score=212.87 Aligned_cols=332 Identities=13% Similarity=0.125 Sum_probs=218.1
Q ss_pred cccccHHHHHhhhcCCCCCccCcchhHHHHHHHHHHHHHHHHhHHHhhhcc-----chhHH-HHHhhHHHHHHHHHHHhc
Q psy11547 105 VFGFSAAATSQLISRDSPYRITSDESTWIASLSAIGTMVGCVLGGYMMDLV-----GRKMT-LIITEVPTILGWALIALA 178 (587)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~s~~~~g~i~s~~~l~~~i~~~~~g~l~dr~-----Grr~~-l~~~~~~~~i~~~~~~~~ 178 (587)
..+..++.+|.+.++ +|+|.++.|++... .+...+ .+++|+++||+ ||||. ++.+.++.+++.++.++.
T Consensus 3 ~~~~~~~~~~~~~~~---~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~ 77 (356)
T TIGR00901 3 PLGLVGNTLPYWLRS---KNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFL 77 (356)
T ss_pred CchhHHhHHHHHHHH---cCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcC
Confidence 345567788888885 99999999999755 555555 89999999998 89886 567788888887788877
Q ss_pred CCCCCCcchhhHHhhhhhhccccccccccceeeeeccCCCcchhHhHHHHHHHHHHHHHHHHhhhhh----h--------
Q psy11547 179 PSLPSSILPWIFTGRILTGLGSGMVGAPSRIYTAECSQPHLRGMLSSLASFGVSLGVLFEYSLGAFL----S-------- 246 (587)
Q Consensus 179 ~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l----~-------- 246 (587)
++.. ..+.+....++.|++.+...+...+++.|++|+++|+++.++...+..+|.++++.++..+ +
T Consensus 78 ~~~~--~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~ 155 (356)
T TIGR00901 78 VPST--DLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITL 155 (356)
T ss_pred Ccch--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccc
Confidence 5432 1225667788888888888899999999999999999999999999999999999999776 6
Q ss_pred HHHHHHHHHHHHHHHHHHhcc-cCCCchHHHhcCCHHHHHHHHHHHhCCCcchHHHHhhHHHHHHHHHHHhhhhhhHhHH
Q psy11547 247 WDTVAAISTIIPVLSIIAGCL-MPESPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQGLYEFSKRQETQKSRNFKETLA 325 (587)
Q Consensus 247 wr~~f~~~~~~~~~~~~~~~~-~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (587)
||..|++.++..++..+..++ .||+++. +.+.++. ++.......+
T Consensus 156 wr~~f~i~ai~~l~~~~~~~~~~~e~~~~---~~~~~~~-------------------------------~~~~~~~~~~ 201 (356)
T TIGR00901 156 WGYIFFWTALLILPGLLVTLFLAKEPQED---ASVPKPL-------------------------------TQAVLKPIRE 201 (356)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhccCCCcc---cccchhH-------------------------------HHHHHHHHHH
Confidence 999999999888776666554 5664321 0000000 0001112233
Q ss_pred hhhcCCchHHHHHHHHHHHHHHhccchhhHhcHHHHHHhcCCCc-chHHHHHHHH-HHHHHHHHhHHHhhcccCCchhhH
Q psy11547 326 AIVEPACLKPFVILMLYFLIYQFSGVNPVTFYAVNIFKDAGAHV-NNNLAAVIMG-IVRLIFTIASCIMMKKMGRRSLTF 403 (587)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~-~~~~i~~~~~g~l~d~~g~~~~~~ 403 (587)
.++++..+. ........++.. ........+.+.++++.|++. +.+......+ +..+++.++++++.||+|+|+.+.
T Consensus 202 ~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~ 279 (356)
T TIGR00901 202 FFQRKNMIQ-ALLLLLLIVLYK-LGDSAATVLTTLFLLDMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALL 279 (356)
T ss_pred HHHhcCchH-HHHHHHHHHHHH-HHHHHHHHHHHHHHHHcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 344443211 222222222222 223445566777777777773 3344444444 567899999999999999999888
Q ss_pred hhhHHHHHHHHHHHHHHHhccCCCCCCCcCccchhHHHHHHHHHHHHHhccccccceeeeeccCCCCchhhHHHHHHHHH
Q psy11547 404 ISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCAC 483 (587)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~ 483 (587)
.+.++.+++..++.+........ + . .....+......++...+.+. ..+...++..|.+|++.||+.+|+.++..
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~-~-~--~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~p~~~~g~~~g~~~~~~ 354 (356)
T TIGR00901 280 LFGIVQALTNAGFVWLASNGHHD-G-I--TFPHLLMLFLTITLEAVTGGL-GTVAFVAFLSKLSNPKFGATQMALLSSLS 354 (356)
T ss_pred HHHHHHHHHHHHHHHHHhcCccc-c-c--ccchHHHHHHHHHHHHHHhHH-HHHHHHHHHHHhcCCCccHHHHHHHHHHH
Confidence 88777766655544422110000 0 0 001122222222222333333 33444689999999999999999988765
Q ss_pred H
Q psy11547 484 H 484 (587)
Q Consensus 484 ~ 484 (587)
+
T Consensus 355 ~ 355 (356)
T TIGR00901 355 A 355 (356)
T ss_pred h
Confidence 4
|
|
| >KOG2615|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-24 Score=200.50 Aligned_cols=333 Identities=14% Similarity=0.124 Sum_probs=206.8
Q ss_pred ccCcchhHHHHHHHHHHHHHHHHhHHHhhhccchhHHHHHhhHHHHHHHHHHHhcCCCCCCcchhhHHhhhhhhcccccc
Q psy11547 124 RITSDESTWIASLSAIGTMVGCVLGGYMMDLVGRKMTLIITEVPTILGWALIALAPSLPSSILPWIFTGRILTGLGSGMV 203 (587)
Q Consensus 124 ~~s~~~~g~i~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~ 203 (587)
+.+..-.|.+.+.+.+++.+.++.+|.++||+|||++++++++..++..++.+++.|+. .++++|++.|+..|-.
T Consensus 64 ~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~-----afv~aR~l~Gi~kgnl 138 (451)
T KOG2615|consen 64 GASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFA-----AFVLARFLGGIFKGNL 138 (451)
T ss_pred cccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHhhhhccCch
Confidence 34566779999999999999999999999999999999999999999999999999997 8888999999987654
Q ss_pred ccccceeeeeccCCCcchhHhHHHHHHHHHHHHHHHHhhhhhhH------HHHH----HHHHHHHHH-HHHHhcccCCCc
Q psy11547 204 GAPSRIYTAECSQPHLRGMLSSLASFGVSLGVLFEYSLGAFLSW------DTVA----AISTIIPVL-SIIAGCLMPESP 272 (587)
Q Consensus 204 ~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~w------r~~f----~~~~~~~~~-~~~~~~~~~esp 272 (587)
.+..++++|.+++++|++.++...+.+++|.++||.+|+++.- +.+| ++..++... .....+++||+-
T Consensus 139 -~v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~alP~~~v~i~a~~~v~~~~~~lpETL 217 (451)
T KOG2615|consen 139 -SVIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFALPCLLVFILAAGDVTFFPWFLPETL 217 (451)
T ss_pred -HHHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhccCchHHHHHHHHHHHHHHHHHHHHhCCccc
Confidence 7899999999999999999999999999999999999999811 1222 222333333 334456699984
Q ss_pred hHHHhcCCHHHHHHHHHHHhCCCcchHHHHhhHHHHHHHHHHHhhhhhhHhHHhhhcCCchHHHHHH--HHHHHHHHhcc
Q psy11547 273 SWLLSQGRKDACRNSLRRLRANNYDVEKEVQGLYEFSKRQETQKSRNFKETLAAIVEPACLKPFVIL--MLYFLIYQFSG 350 (587)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 350 (587)
+...++ ++... ..+..+ ..++..+.........++++.....+... +.+..+....
T Consensus 218 ~~rk~~---~~~~~-----------~~~~~~-------~~~~~~~~~~~~~v~~lrn~p~~~~i~~~~i~~l~~~ly~~- 275 (451)
T KOG2615|consen 218 PLRKRN---DEHST-----------LQEAAD-------DRLALLKFARIFKVAALRNPPLLDFISVLRIFGLHYFLYLE- 275 (451)
T ss_pred cchhhc---ccccc-----------hhhhhh-------hhhhhcchhhhhhhhhhcCccccchHHHHHHHHHHHHHHHH-
Confidence 321111 10000 000000 00000111112223334444433311111 1111111111
Q ss_pred chhhHhcHHHHH--HhcCCC-cchHHHHHHHHHHHHHHHHhHHHhhcccC--CchhhHhhhHHHHHHHHHHHHHHHhccC
Q psy11547 351 VNPVTFYAVNIF--KDAGAH-VNNNLAAVIMGIVRLIFTIASCIMMKKMG--RRSLTFISSIGCGVSMTGLGLYIFATKD 425 (587)
Q Consensus 351 ~~~~~~~~~~~~--~~~g~~-~~~~~~~~~~~~~~~i~~~~~g~l~d~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (587)
.+....+....+ ...|++ .+.+......++.+.+.........+|.+ -+-.+..+..++.-..+++..
T Consensus 276 l~s~~~~t~~~l~~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~------- 348 (451)
T KOG2615|consen 276 LFSGLENTVLFLTHGRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSL------- 348 (451)
T ss_pred HHHHHHhhHHHhhcCccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhc-------
Confidence 111222223333 335665 55565555566666665555555555554 333333333333333333322
Q ss_pred CCCCCCcCccchhHHHHHHHHHHHHHhccccccceeeeeccCCCCchhhHHHHHHHHHHHHHHHHHHhhHHHHHh
Q psy11547 426 FWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTH 500 (587)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~ 500 (587)
............+..+...... +-...++....|.+.||++.|+..+.+.++.++||.+.|.+...
T Consensus 349 --------~~~~~~l~~~s~l~sf~~A~~v-t~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~W 414 (451)
T KOG2615|consen 349 --------ARTPVVLYLGSTLKSFSTASVV-TCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFSW 414 (451)
T ss_pred --------cccchhhhHHHHHHHHHHHHhh-HHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEEE
Confidence 1222233333333333333333 33347888999999999999999999999999999999877643
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.2e-23 Score=221.03 Aligned_cols=303 Identities=14% Similarity=0.171 Sum_probs=207.7
Q ss_pred HHHHHhhhhhhccccccHHHHHhhhcCCCCCccCcchhHHHHHHHHHHHHHHHHhHHHhhhccchhHHHHHhhHHHHHHH
Q psy11547 93 VFANLGNVNTGMVFGFSAAATSQLISRDSPYRITSDESTWIASLSAIGTMVGCVLGGYMMDLVGRKMTLIITEVPTILGW 172 (587)
Q Consensus 93 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~i~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~ 172 (587)
+..++..+......+..+.+++.+.++ |+++..+.|++.+.+.++++++.++.|+++||+|||+++.++.+++++++
T Consensus 36 ~~~~~~~~~~~~~~g~~~~~l~~iek~---F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ 112 (633)
T TIGR00805 36 LLLTCAQLQGLLYNGLVNSSLTTIERR---FKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGS 112 (633)
T ss_pred HHHHHHHHHHHHHHHHHHhhchhhhhh---hCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHH
Confidence 334455666667778888999999885 99999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCC----CC------------------------------------------CCcchhhHHhhhhhhccccccccc
Q psy11547 173 ALIALAPS----LP------------------------------------------SSILPWIFTGRILTGLGSGMVGAP 206 (587)
Q Consensus 173 ~~~~~~~~----~~------------------------------------------~~~~~~l~~~r~l~G~~~g~~~~~ 206 (587)
+++++.+- +. ...+..++++|+++|+|.+..++.
T Consensus 113 ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~ 192 (633)
T TIGR00805 113 FLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPL 192 (633)
T ss_pred HHHhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhc
Confidence 99987630 00 001336778999999999999999
Q ss_pred cceeeeeccCCCcchhHhHHHHHHHHHHHHHHHHhhhhh-----h---------------------HHHHHHHHHHHHHH
Q psy11547 207 SRIYTAECSQPHLRGMLSSLASFGVSLGVLFEYSLGAFL-----S---------------------WDTVAAISTIIPVL 260 (587)
Q Consensus 207 ~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l-----~---------------------wr~~f~~~~~~~~~ 260 (587)
..+++.|++|+++|+++++++..+..+|.++|+++++++ + |+..|++.+++.++
T Consensus 193 ~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l 272 (633)
T TIGR00805 193 GISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALL 272 (633)
T ss_pred CchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998765 1 67778888888877
Q ss_pred HHHHhcccCCCchHHHhcCCHHHHHHHHHHHhCCCcchHHHHhhHHHHHHHHHHHhhhhhhHhHHhhhcCCchHHHHHHH
Q psy11547 261 SIIAGCLMPESPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQGLYEFSKRQETQKSRNFKETLAAIVEPACLKPFVILM 340 (587)
Q Consensus 261 ~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (587)
..+..+++|+..+....+.+.+..++ +...... +. .. .......+...+..+++++++.++...+..+
T Consensus 273 ~~v~l~~~p~~lp~~~~~~~~~~~~~--~~~~~~~-~~--~~-------~~~~~~~~~~~~~~~~Ll~n~~f~~~~l~~~ 340 (633)
T TIGR00805 273 TSIPFFFFPKALPKEGKRVNVDVHET--EKLEKSE-DK--SR-------KKNSDITKDFPKIIKRLLCNPIYMLVILAQV 340 (633)
T ss_pred HHHHHHhCccccCCcccccchhhhhh--hcccccc-cc--cc-------hhhhhhHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 76666566654211000000000000 0000000 00 00 0000001112234556677765443333222
Q ss_pred HHHHHHHhccchhhHhcHHHHHHh-cCCC-cchHHHHHHHHH-HHHHHHHhHHHhhcccCC--chhhHhhhHHHHHHHHH
Q psy11547 341 LYFLIYQFSGVNPVTFYAVNIFKD-AGAH-VNNNLAAVIMGI-VRLIFTIASCIMMKKMGR--RSLTFISSIGCGVSMTG 415 (587)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~-~g~~-~~~~~~~~~~~~-~~~i~~~~~g~l~d~~g~--~~~~~~~~~~~~~~~~~ 415 (587)
+ .......+..+.|.++++ .|++ ...+....+..+ +.+++.+++|+++||++. |+.+.++.++..++.+.
T Consensus 341 ~-----~~~~~~~~~~~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~~~~~~~~~~~~~ 415 (633)
T TIGR00805 341 I-----DSLAFNGYITFLPKYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAYFAICLSTLSYLL 415 (633)
T ss_pred H-----HHHHHHHHHHHHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeecccHHHHHHHHHHHHHHHHHH
Confidence 2 222355577788888875 6776 344444444444 567899999999999984 55666666666655444
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.91 E-value=3e-22 Score=201.67 Aligned_cols=371 Identities=11% Similarity=0.024 Sum_probs=235.8
Q ss_pred HHHHHhhhhhhccccccHHHHHhhhcCCCCCccCcchhHHH--HHHHHHHHHHHHHhHHH-hhhccchhHHHHHhhHHH-
Q psy11547 93 VFANLGNVNTGMVFGFSAAATSQLISRDSPYRITSDESTWI--ASLSAIGTMVGCVLGGY-MMDLVGRKMTLIITEVPT- 168 (587)
Q Consensus 93 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~i--~s~~~l~~~i~~~~~g~-l~dr~Grr~~l~~~~~~~- 168 (587)
..++..++.+|...+...+.+|.+.++ .|.+.+++|++ .+++.+...+.+++++. ..||+||||..++.+.+.
T Consensus 4 ~~~~~ly~~~g~~~~~~~p~lp~~l~~---~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~ 80 (390)
T TIGR02718 4 ITLGLLYLSQGIPIGLAMDALPTLLRE---DGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLV 80 (390)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHH---cCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHH
Confidence 445566788999999999999999985 89999999997 46778888888888854 799999998876655332
Q ss_pred HHHHHHHH-hcCCCCCCcchhhHHhhhhhhccccccccccceeeeeccCCCcchhHhHHHHHHHHHHHHHHHHhhhhh--
Q psy11547 169 ILGWALIA-LAPSLPSSILPWIFTGRILTGLGSGMVGAPSRIYTAECSQPHLRGMLSSLASFGVSLGVLFEYSLGAFL-- 245 (587)
Q Consensus 169 ~i~~~~~~-~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l-- 245 (587)
++.....+ +..... ...+++..-++.++..+...+...++..|..++++++...+....+..+|.++|+.+.+++
T Consensus 81 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~ 158 (390)
T TIGR02718 81 SACLASLALVGPDVA--GAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFG 158 (390)
T ss_pred HHHHHHHHcCCcchh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 32232333 211110 0113445556666666777777777888888888888888888888899999999766655
Q ss_pred --hHHHHHHHHHHHHHHHHHHhcccCCCchHHHhcCCHHHHHHHHHHHhCCCcchHHHHhhHHHHHHHHHHHhhhhhhHh
Q psy11547 246 --SWDTVAAISTIIPVLSIIAGCLMPESPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQGLYEFSKRQETQKSRNFKET 323 (587)
Q Consensus 246 --~wr~~f~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (587)
+||..|++.+++.++..+..++++|+++. +.+. ++...++.
T Consensus 159 ~~gw~~~f~~~a~l~~~~~~~~~~~~~~~~~---~~~~----------------------------------~~~~~~~~ 201 (390)
T TIGR02718 159 KFGQRPAFLLVACVPLASLVCVLWLKDRAVA---SPEA----------------------------------PLARRASL 201 (390)
T ss_pred HhCHHHHHHHHHHHHHHHHHHHHHcCCCCcC---cccc----------------------------------chhhHHHH
Confidence 99999999998887766665555443210 0000 00011234
Q ss_pred HHhhhcCCchHHHHHHHHHHHHHHhccchhhHhcHHHHHHhcCCC-cchHHHHHHHH-HHHHHHHHhHHHhhcccCCchh
Q psy11547 324 LAAIVEPACLKPFVILMLYFLIYQFSGVNPVTFYAVNIFKDAGAH-VNNNLAAVIMG-IVRLIFTIASCIMMKKMGRRSL 401 (587)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~-~~~~i~~~~~g~l~d~~g~~~~ 401 (587)
.+.++++..+......++... .......+.+.++++.|++ .+.+......+ ...+++.++.|++.||+|+|+.
T Consensus 202 ~~~l~~~~~~~~~~~~~l~~~-----~~~~~~~~~~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~ 276 (390)
T TIGR02718 202 FRFFRRPLAWSLLALALLSAM-----TAVSGFGLSKLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRT 276 (390)
T ss_pred HHHHcCcCHHHHHHHHHHHHH-----HHHHHHHHhhHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 456666654433322222221 1222334556677778888 44455555554 4566778999999999999998
Q ss_pred hHhhhHHHHHHHHHHHHHHHhccCCCCCCCcCccchhHHHHHHHHHHHHHhccccccceeeeeccCCC-CchhhHHHHHH
Q psy11547 402 TFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPT-KVRGIVGGLTT 480 (587)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~r~~~~g~~~ 480 (587)
+..+.++.++..+........ +. ............+.....+... +..++...+..++ +.+++.+++.+
T Consensus 277 l~~~~~~~~~~~~~~~~~~~~----~~-----~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~g~~~~~~~ 346 (390)
T TIGR02718 277 FILGVGLAGSLALLWFAQAAF----WL-----APGIAVAWSCSAFGSLITGITS-VAIYTAFMRFAGDGDQAGTDVTAVQ 346 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHc----cc-----CCcHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCcccchHHHHHHHH
Confidence 887766553332222211110 00 0111111111111111222222 2223444555555 88899999999
Q ss_pred HHHHHHHHHHHHhhHHHHHhhhhhhHHHHHHHHHHHHHHH
Q psy11547 481 CACHFFIFLTVKSYNMFQTHLTKEGTFLMYGCISLLGTIF 520 (587)
Q Consensus 481 ~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~ 520 (587)
+..++|..++|.+.|.+.|..|+...|.+.+++.+++.++
T Consensus 347 ~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~~ 386 (390)
T TIGR02718 347 STRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAILL 386 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999888888777766665443
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.8e-22 Score=183.63 Aligned_cols=362 Identities=13% Similarity=0.113 Sum_probs=267.6
Q ss_pred HHHHHHHHHhhhhhhccccccHHHHHhhhcCCCCCccCcchhHHHHHHHHHHHHHHHHhHHHhhhccchhHHHHHhhHHH
Q psy11547 89 LTLAVFANLGNVNTGMVFGFSAAATSQLISRDSPYRITSDESTWIASLSAIGTMVGCVLGGYMMDLVGRKMTLIITEVPT 168 (587)
Q Consensus 89 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~i~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~ 168 (587)
++.+..+.+..++.--....++|+++++.++ +|+|.+..|+++++..+..++.+++..+++.|+|.++.+..++++.
T Consensus 11 ~~li~gIvlia~NLR~~itsvgPLL~~Ir~~---~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli 87 (395)
T COG2807 11 LLLLAGIVLIAFNLRPAITSVGPLLDEIRQD---LGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLI 87 (395)
T ss_pred hHHHHHHHHHHhccchhhhhhhhhHHHHHHH---hcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHH
Confidence 4444555555666677788889999999995 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCcchhhHHhhhhhhccccccccccceeeeeccCCCcchhHhHHHHHHHHHHHHHHHHhhhhh---
Q psy11547 169 ILGWALIALAPSLPSSILPWIFTGRILTGLGSGMVGAPSRIYTAECSQPHLRGMLSSLASFGVSLGVLFEYSLGAFL--- 245 (587)
Q Consensus 169 ~i~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l--- 245 (587)
+++.++-... +.. .++.+-.+.|.|.+......+.++.+.||++ -+..++++.+..++|..+++.++..+
T Consensus 88 ~~G~~iR~~~-~~~-----~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~-~~~mtglYs~sl~~~aaLaa~lavpla~~ 160 (395)
T COG2807 88 AAGILIRSLG-GLP-----LLFLGTLLAGAGIAVINVLLPSLIKRDFPKR-VGLMTGLYSTSLGAGAALAAALAVPLAQH 160 (395)
T ss_pred HHHHHHHhcc-cHH-----HHHHHHHHHHhhHHHHHHhhhHHHHhhcccc-hhhHHhHHHHHHHHHHHHHhhhhhHHHHh
Confidence 9999998887 555 7899999999999999999999999999866 89999999999999888888777666
Q ss_pred --hHHHHHHHHHHHHHHHHHHhcccCCCchHHHhcCCHHHHHHHHHHHhCCCcchHHHHhhHHHHHHHHHHHhhhhhhHh
Q psy11547 246 --SWDTVAAISTIIPVLSIIAGCLMPESPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQGLYEFSKRQETQKSRNFKET 323 (587)
Q Consensus 246 --~wr~~f~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (587)
+||....+-+.++++.++.++-- ..+. +.. ..+.+.++.
T Consensus 161 ~~gW~~aL~~WAl~allAl~~WlPq--~~r~-----~~~--------------------------------~~~~~~~~~ 201 (395)
T COG2807 161 SGGWRGALGFWALLALLALLIWLPQ--ALRE-----QAA--------------------------------SIATKLVSV 201 (395)
T ss_pred hccHHHHHHHHHHHHHHHHHHHhhh--cccc-----ccc--------------------------------ccccccccc
Confidence 79999999999998888776432 1110 000 011111122
Q ss_pred HHhhhcCCchHHHHHHHHHHHHHHhccchhhHhcHHHHHHhcCCC-cchHHHHHHHHHHHHHHHHhHHHhhcccC-Cchh
Q psy11547 324 LAAIVEPACLKPFVILMLYFLIYQFSGVNPVTFYAVNIFKDAGAH-VNNNLAAVIMGIVRLIFTIASCIMMKKMG-RRSL 401 (587)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~i~~~~~g~l~d~~g-~~~~ 401 (587)
.+.++++.- +...+++..+...++....|+|.++.+.|++ .+++....+..+..++.++....+.+|.. +|+.
T Consensus 202 ~~vw~~~~a-----W~vtLfmGlqS~~~Y~~~~WLP~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~ 276 (395)
T COG2807 202 RKVWRSPLA-----WQVTLFMGLQSLLYYIVIGWLPAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPL 276 (395)
T ss_pred cccccCchh-----HHHHHHHHhhHHHHHHHHHHHHHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchH
Confidence 334444443 3334444455556788899999999999999 67788889999999999999999998754 5666
Q ss_pred hHhhhHHHHHHHHHHHHHHHhccCCCCCCCcCccchhHHHHHHHHHHHHHhccccccceeeeeccC-CCCchhhHHHHHH
Q psy11547 402 TFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVY-PTKVRGIVGGLTT 480 (587)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~r~~~~g~~~ 480 (587)
......++.++.+.+.+... ...+.+ .++++.+.+. ..++..+.+.... .++..+.-.|+.+
T Consensus 277 ~~~~~~~~l~G~~G~~~~P~-------------~~~~lw---~~llG~G~G~-~F~laL~li~~rs~~a~~Aa~LSgmaQ 339 (395)
T COG2807 277 VVLALLLMLVGLVGLLLAPG-------------QLPILW---ALLLGLGQGG-AFPLALTLILLRSSDAAIAAALSGMAQ 339 (395)
T ss_pred HHHHHHHHHHHHHHHHHhhh-------------hHHHHH---HHHHhCccch-HHHHHHHHHHhhcCChHHHHHHHHHhh
Confidence 66666666777666654211 122222 2333333222 2344334444443 3455578889999
Q ss_pred HHHHHHHHHHHHhhHHHHHhhh-hhhHHHHHHHHHHHHHHHh
Q psy11547 481 CACHFFIFLTVKSYNMFQTHLT-KEGTFLMYGCISLLGTIFF 521 (587)
Q Consensus 481 ~~~~~g~~i~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~ 521 (587)
.++++-.++||.++|.+.|..| |...+..++.+.++..+.-
T Consensus 340 g~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~i~m~i~G 381 (395)
T COG2807 340 GVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALATLLMLIFG 381 (395)
T ss_pred hhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999987 4445555555554444443
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.2e-21 Score=192.12 Aligned_cols=397 Identities=13% Similarity=0.190 Sum_probs=247.4
Q ss_pred hccccccHHHHHhhhcCCCCCccCcchhHHHHHHHHHHHHHHHHhHHHhhh----ccchhHHHHHh-hHHHHHHHHHHHh
Q psy11547 103 GMVFGFSAAATSQLISRDSPYRITSDESTWIASLSAIGTMVGCVLGGYMMD----LVGRKMTLIIT-EVPTILGWALIAL 177 (587)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~i~s~~~l~~~i~~~~~g~l~d----r~Grr~~l~~~-~~~~~i~~~~~~~ 177 (587)
.+..+...+.++.+.++ +|.+..+.+++..+..+...+.+++.|+++| |+||||.++++ .+...++.++.++
T Consensus 17 q~~~~l~~~~l~~yl~~---lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~ 93 (477)
T TIGR01301 17 QFGWALQLSLLTPYVQE---LGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGF 93 (477)
T ss_pred HHHHHHHHHHHHHHHHH---cCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHh
Confidence 33344444555555553 8999999999999999999999999999999 59999988774 6666777778888
Q ss_pred cCCCCCC--------c----chhhHHhhhhhhccccccccccceeeeeccCCCcc--hhHhHHHHHHHHHHHHHHHHhhh
Q psy11547 178 APSLPSS--------I----LPWIFTGRILTGLGSGMVGAPSRIYTAECSQPHLR--GMLSSLASFGVSLGVLFEYSLGA 243 (587)
Q Consensus 178 ~~~~~~~--------~----~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r--~~~~~~~~~~~~~G~~i~~~l~~ 243 (587)
+++.... . .+.++++-.+..++.....+...+++.|.+|+++| +.+.++.+...++|.++|+.+++
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~ 173 (477)
T TIGR01301 94 AADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGA 173 (477)
T ss_pred CchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7764300 0 01223333344457777888889999999998865 57999999999999999999887
Q ss_pred hh-------------------hHHHHHHHHHHHHHHHHHHhcc-cCCCchHHHhcCCHHHHHHHHHHHhCCCcchHHHHh
Q psy11547 244 FL-------------------SWDTVAAISTIIPVLSIIAGCL-MPESPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQ 303 (587)
Q Consensus 244 ~l-------------------~wr~~f~~~~~~~~~~~~~~~~-~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (587)
.. +.|..|++.+++.++..++..+ ++|.|... .++..++ +.+..+
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~-~~~~~~~------~~~~~~-------- 238 (477)
T TIGR01301 174 YSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIG-SDDFINS------EAAPPS-------- 238 (477)
T ss_pred HHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCc-cccchhh------hccccc--------
Confidence 53 4577888888887777766655 88865211 0000000 000000
Q ss_pred hHHHHHHHHHHHhhhhhhHhHHhhhcCCchHHHHHHHHHHHHHHhccchhhHhcHHHHHHh--cCCC-c-----c-----
Q psy11547 304 GLYEFSKRQETQKSRNFKETLAAIVEPACLKPFVILMLYFLIYQFSGVNPVTFYAVNIFKD--AGAH-V-----N----- 370 (587)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~-~-----~----- 370 (587)
+.+.....++.++.+++- .+.+...+...++.+.+...+..|.+.+..+ ++-+ . +
T Consensus 239 ---------~~~~~~~~~~i~~~~~~m---P~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~ 306 (477)
T TIGR01301 239 ---------KHGEEAFFGELFGAFKYL---PRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRA 306 (477)
T ss_pred ---------ccchhhhHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHH
Confidence 000011122233333222 1222222222233333455555555555553 2211 0 1
Q ss_pred hHHHHHHHHHHHHHHHHhHHHhhcccCC-chhhHhhhHHHHHHHHHHHHHHHhccC--CC--CCCCcCccc--hhHHHHH
Q psy11547 371 NNLAAVIMGIVRLIFTIASCIMMKKMGR-RSLTFISSIGCGVSMTGLGLYIFATKD--FW--PEYKFPAFV--SYLPVLM 443 (587)
Q Consensus 371 ~~~~~~~~~~~~~i~~~~~g~l~d~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~--~~~~~~~ 443 (587)
..+.....++...+.+++..++.+|+|+ |++..++.++.+++++...+.....++ .. .....+... .+..++.
T Consensus 307 G~~~l~~~s~~~~i~s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 386 (477)
T TIGR01301 307 GAFGLMLNSVVLGITSIGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIV 386 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHH
Confidence 1133455566666777888889999985 677688877777777777654432000 00 000000011 2334444
Q ss_pred HHHHHHHHhccccccceeeeeccCCC--CchhhHHHHHHHHHHHHHHHHHHhhHHHHHhhh--hhhHHHHHHHHHHHHHH
Q psy11547 444 LMTFTAASTIGYLVVPWVMIGEVYPT--KVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLT--KEGTFLMYGCISLLGTI 519 (587)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~p~--~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g--~~~~~~~~~~~~~~~~~ 519 (587)
+..++... .....++++++++..++ +..|..+|+.|.+..+...+.....|.+.+..| ...++.+.++..+++++
T Consensus 387 ~~~~Gi~~-A~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~ 465 (477)
T TIGR01301 387 FAILGIPL-AITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGL 465 (477)
T ss_pred HHHhhHHH-HHHHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHH
Confidence 44444444 34456778999999985 445999999999999999999988888766666 34467777777888888
Q ss_pred HhheecccCCC
Q psy11547 520 FFYVYLPETKN 530 (587)
Q Consensus 520 ~~~~~~~~~~~ 530 (587)
+.++.+|+.+.
T Consensus 466 ~~~~~~~~~~~ 476 (477)
T TIGR01301 466 LALILLPRPRV 476 (477)
T ss_pred HHHHhCCCCCC
Confidence 88888887653
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.3e-21 Score=201.39 Aligned_cols=389 Identities=12% Similarity=0.122 Sum_probs=223.8
Q ss_pred HHHHHhhhcCCCCCccCcchhHHHHHHHHHHHHHHHHhHHHhhhc-cchhHHHHHhhHHHHHHHHHHHhcCC-CCCCcch
Q psy11547 110 AAATSQLISRDSPYRITSDESTWIASLSAIGTMVGCVLGGYMMDL-VGRKMTLIITEVPTILGWALIALAPS-LPSSILP 187 (587)
Q Consensus 110 ~~~~~~~~~~~~~~~~s~~~~g~i~s~~~l~~~i~~~~~g~l~dr-~Grr~~l~~~~~~~~i~~~~~~~~~~-~~~~~~~ 187 (587)
...++.+..+ ++|++..+.+++.+.+........+++|+++|| +|||++++++.++.+++.++++++++ .+
T Consensus 41 ~~~l~~yl~~--~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~~~~~----- 113 (500)
T PRK09584 41 QGIMAVYLVK--QLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSGHDAG----- 113 (500)
T ss_pred HHHHHHHHHH--HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcccHH-----
Confidence 3444444432 499999999999988887777777899999999 59999999999999999999998754 44
Q ss_pred hhHHhhhhhhccccccccccceeeeeccCCCc--chhHhHHHHHHHHHHHHHHHHhhhhh----hHHHHHHHHHHHHHHH
Q psy11547 188 WIFTGRILTGLGSGMVGAPSRIYTAECSQPHL--RGMLSSLASFGVSLGVLFEYSLGAFL----SWDTVAAISTIIPVLS 261 (587)
Q Consensus 188 ~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~--r~~~~~~~~~~~~~G~~i~~~l~~~l----~wr~~f~~~~~~~~~~ 261 (587)
.++++|+++|+|.|...+...+++.|++|+++ |+.++++++++.++|.++||.+++++ |||+.|++.++..++.
T Consensus 114 ~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i~ 193 (500)
T PRK09584 114 IVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGMLIT 193 (500)
T ss_pred HHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHH
Confidence 67788999999999999999999999998654 45688899999999999999999988 8999999987654444
Q ss_pred HHHhcc----cCCCchHHHhcCCHHHHHHHH-----------HHHhCCCcchHHHHhhHHHHHHHHHHHhhhhhhHhHHh
Q psy11547 262 IIAGCL----MPESPSWLLSQGRKDACRNSL-----------RRLRANNYDVEKEVQGLYEFSKRQETQKSRNFKETLAA 326 (587)
Q Consensus 262 ~~~~~~----~~esp~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (587)
++..++ ++|.++. ..+++.+...... ......+.+................ ...+.
T Consensus 194 ~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~ 264 (500)
T PRK09584 194 VVNFAFCQRWVKQYGSK-PDFEPINYRKLLLTIVGVVALIAIATWLLHNQEIARMALGVVALGIVVI--------FGKEA 264 (500)
T ss_pred HHHHHHhHHHhccCCCC-CCccccchhhHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH--------HHHHH
Confidence 332222 3332110 0000011000000 0000000000000000000000000 00000
Q ss_pred hh-cCCchHHHHHHHHHHHHHHhccchhhHhcHHHHHH----h------cCCCcchHHHHHHHHHHHHHHHHhH----HH
Q psy11547 327 IV-EPACLKPFVILMLYFLIYQFSGVNPVTFYAVNIFK----D------AGAHVNNNLAAVIMGIVRLIFTIAS----CI 391 (587)
Q Consensus 327 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~------~g~~~~~~~~~~~~~~~~~i~~~~~----g~ 391 (587)
.+ .+..+++.+..+....... .+.......+..+. + .|+.........+..+..++..++. ++
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~i--~f~~~~~q~~~~l~~~~~~~~~~~~~g~~i~~~~~~s~n~i~iil~~p~~~~~~~~ 342 (500)
T PRK09584 265 FAMKGAARRKMIVAFILMLEAI--IFFVLYSQMPTSLNFFAIRNVEHSILGIAVEPEQYQALNPFWIMIGSPILAAIYNK 342 (500)
T ss_pred hhcCHHHHHHHHHHHHHHHHHH--HHHHHHHHhccHHHHHHHHhccccccceEECHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 00 0001111111111111100 01111122222211 1 1222335556666666666666665 44
Q ss_pred hhcccCCchhhHhhhHHHHHHHHHHHHHHHhccCCCCCCCcCccchhHHHHHHHHHHHHHhccccccceeeeeccCCCCc
Q psy11547 392 MMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKV 471 (587)
Q Consensus 392 l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 471 (587)
+.+|++..+.+.+++++.+++.+.+........++ ...+....+...++.........|...+++.+..|++.
T Consensus 343 l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~-------~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~ 415 (500)
T PRK09584 343 MGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFANDA-------GIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRL 415 (500)
T ss_pred hCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCC-------CccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHH
Confidence 55555555677888888888887776643321111 11122244444555555556666777789999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhHHHH----------HhhhhhhHHHHHHHHHHHHHHHhhe
Q psy11547 472 RGIVGGLTTCACHFFIFLTVKSYNMFQ----------THLTKEGTFLMYGCISLLGTIFFYV 523 (587)
Q Consensus 472 r~~~~g~~~~~~~~g~~i~~~~~g~l~----------~~~g~~~~~~~~~~~~~~~~~~~~~ 523 (587)
||+.+|+......+|..++..+.+... ...++...|...++++++..++.+.
T Consensus 416 rg~~~g~~~l~~a~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~~~~~ 477 (500)
T PRK09584 416 MGFIMGSWFLTTAGAALIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVIAVLMLL 477 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999877666666666655554221 1123566777777666655544433
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=6e-21 Score=196.38 Aligned_cols=355 Identities=13% Similarity=0.053 Sum_probs=214.1
Q ss_pred hhhhhhccccccHHHHHhhhcCCCCCccCcchhHHHHHHHHHHHHHHHHhHHHhhh----ccch-hHHHHHhhHHHHHHH
Q psy11547 98 GNVNTGMVFGFSAAATSQLISRDSPYRITSDESTWIASLSAIGTMVGCVLGGYMMD----LVGR-KMTLIITEVPTILGW 172 (587)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~i~s~~~l~~~i~~~~~g~l~d----r~Gr-r~~l~~~~~~~~i~~ 172 (587)
+.+...+......+.++.+..+ .+|++..++|.+..+..+..++..++.|.++| |+|| |+.++++.+..+++.
T Consensus 14 g~~~~~~~~~~~~~~l~~yyt~--v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~ 91 (473)
T PRK10429 14 GAFGKDFAIGIVYMYLMYYYTD--VVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVL 91 (473)
T ss_pred chhHHhHHHHHHHHHHHHHHHH--hcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHH
Confidence 3333344444444555544443 37999999999999999999999999999999 6798 677888888888887
Q ss_pred HHHHhcCCCCCCc-chhhHHhhhhhhccccccccccceeeeecc-CCCcchhHhHHHHHHHHHHHHHHHHhhhh----h-
Q psy11547 173 ALIALAPSLPSSI-LPWIFTGRILTGLGSGMVGAPSRIYTAECS-QPHLRGMLSSLASFGVSLGVLFEYSLGAF----L- 245 (587)
Q Consensus 173 ~~~~~~~~~~~~~-~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~-~~~~r~~~~~~~~~~~~~G~~i~~~l~~~----l- 245 (587)
+++...++..... ++.+++.-++.+++.....+...+++.|+. ++++|.+..++...+.++|.++.+.+... +
T Consensus 92 ~llf~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g 171 (473)
T PRK10429 92 FLLFSAHLFEGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVG 171 (473)
T ss_pred HHHHcCCCCCccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 6665544332111 224555666778888888888889999998 58899999998777777765555443321 1
Q ss_pred ------hHHHHHHHHHHHHHHHHHHhcc-cCCCchHHHhcCCHHHHHHHHHHHhCCCcchHHHHhhHHHHHHHHHHHhhh
Q psy11547 246 ------SWDTVAAISTIIPVLSIIAGCL-MPESPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQGLYEFSKRQETQKSR 318 (587)
Q Consensus 246 ------~wr~~f~~~~~~~~~~~~~~~~-~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (587)
+|+....+.+++.++..+..++ .+|.+.....+.+ ++++.
T Consensus 172 ~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~e~~~~~~~~~~---------------------------------~~~~~ 218 (473)
T PRK10429 172 GGDRGFGFQMFTLVLIAFFIVSTIITLRNVHEVYSSDNQVSA---------------------------------EGSHL 218 (473)
T ss_pred CCchhhhHHHHHHHHHHHHHHHHHHHHcCceecCCccccccc---------------------------------cccCC
Confidence 5777777777776665555444 6664310000000 00111
Q ss_pred hhhHh-HHhhhcCCchHHHHHHHHHHHHHHhccchhhHhcHHHHHHhcCCC-cchHHHHHHHHHHHHHHHHhHHHhhccc
Q psy11547 319 NFKET-LAAIVEPACLKPFVILMLYFLIYQFSGVNPVTFYAVNIFKDAGAH-VNNNLAAVIMGIVRLIFTIASCIMMKKM 396 (587)
Q Consensus 319 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~i~~~~~g~l~d~~ 396 (587)
+.++. ...++++.++..+...++... .......+.+++.+....+ ...........++.+++.++.+++.||+
T Consensus 219 ~~~~~~~~~~~n~~~~~ll~~~~~~~~-----~~~~~~~~~~y~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~ 293 (473)
T PRK10429 219 TLKDIVALIYKNDQLSCLLGMALAYNI-----ASNIINGFAIYYFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVKSL 293 (473)
T ss_pred CHHHHHHHHhcCHHHHHHHHHHHHHHH-----HHHHHhhheeeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 11222 223344333222221111111 1222223333333332122 2233444555678888999999999999
Q ss_pred CCchhhHhhhHHHHHHHHHHHHHHHhccCCCCCCCcCccchhHHHHHHHHHHHHHhccccccceeeeeccCC-------C
Q psy11547 397 GRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYP-------T 469 (587)
Q Consensus 397 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~ 469 (587)
|+|+.+.++.++.+++.+.+....... ....+..++...+.+.+.+.. .+..+++++|..+ .
T Consensus 294 gkk~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~i~~~l~g~~~~~~-~~~~~am~ad~id~~e~~tG~ 362 (473)
T PRK10429 294 SRRILWAGASIFPVLSCGVLLLMGLAA----------PHNALLIVIAGILLNIGTALF-WVLQVIMVADTVDYGEYKLGI 362 (473)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHhccC----------chhHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhhhhhHhcCc
Confidence 999998877776555554443321110 112233333333333333332 3444577888754 3
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHhhHHHHHhhhh
Q psy11547 470 KVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLTK 503 (587)
Q Consensus 470 ~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~ 503 (587)
+..|...|...+...++..+++.+.|.+.+..|+
T Consensus 363 R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~~Gy 396 (473)
T PRK10429 363 RCESIAYSVQTMVVKGGSAFAAFFIGVVLGLIGY 396 (473)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4457789999999999999999999999987776
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.9e-20 Score=183.21 Aligned_cols=361 Identities=14% Similarity=0.138 Sum_probs=239.3
Q ss_pred hccccccHHHHHhhhcCCCCCccCcchhHHHHHHHHHHHHHHHHhHHHhhhccc-hhHHHHHhhHHHHHHHHHHHhcCCC
Q psy11547 103 GMVFGFSAAATSQLISRDSPYRITSDESTWIASLSAIGTMVGCVLGGYMMDLVG-RKMTLIITEVPTILGWALIALAPSL 181 (587)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~i~s~~~l~~~i~~~~~g~l~dr~G-rr~~l~~~~~~~~i~~~~~~~~~~~ 181 (587)
.+..+...|.++.+.++ .|.|..|+|.+.++..+...++++++|.++||++ +|+++.+..++.++........+++
T Consensus 15 f~~~G~~~p~~~~~L~~---~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~~~~f 91 (400)
T PF03825_consen 15 FFAYGAFLPYLPLYLES---RGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAFSSSF 91 (400)
T ss_pred HHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHhccH
Confidence 34444555777777775 8899999999999999999999999999999987 5788888888888877777888888
Q ss_pred CCCcchhhHHhhhhhhccccccccccceeeeeccCCCcchhHhHHHHHHHHHHHHHHHH-----hhhhh---hHHHHHHH
Q psy11547 182 PSSILPWIFTGRILTGLGSGMVGAPSRIYTAECSQPHLRGMLSSLASFGVSLGVLFEYS-----LGAFL---SWDTVAAI 253 (587)
Q Consensus 182 ~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~-----l~~~l---~wr~~f~~ 253 (587)
+ .+++.-++..+......|...++..+...+ ++.-.|-.-...++|.+++.. +.+.. +..+.+++
T Consensus 92 ~-----~~~~~~~l~~~~~~p~~pl~dsi~~~~~~~--~~~~YG~iRlwGSiGf~~~~~~~~~~~~~~~~~~~~~~~~~i 164 (400)
T PF03825_consen 92 W-----WLFVIMLLFSFFFSPTMPLSDSIALSYLGD--RGKDYGRIRLWGSIGFIVAALAFGGLLGGYLGISGTSLIFYI 164 (400)
T ss_pred H-----HHHHHHHHHHHHHccHHHHHHHHHHHHccc--ccCCCCcchhhhhHHHHHHHHHHHHHHHhhhccccccHHHHH
Confidence 8 788888888887777788888887776653 333444444445555544432 22222 22345666
Q ss_pred HHHHHHHHHHHhcccCCCchHHHhcCCHHHHHHHHHHHhCCCcchHHHHhhHHHHHHHHHHHhhhhhhHhHHhhhcCCch
Q psy11547 254 STIIPVLSIIAGCLMPESPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQGLYEFSKRQETQKSRNFKETLAAIVEPACL 333 (587)
Q Consensus 254 ~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (587)
.+...++.....+.+|+.|.....+.+ .++...++..+.+++|+..
T Consensus 165 ~~~~~~ll~~~~l~lp~~~~~~~~~~~----------------------------------~~~~~~~~~~~llk~~~~~ 210 (400)
T PF03825_consen 165 AAILSLLLAGFALFLPKTPPKRSAKES----------------------------------VKKLLGLDALKLLKNPRFL 210 (400)
T ss_pred HHHHHHHHHHHHHhCCCCccccccCCC----------------------------------cccccchHHHHHhcCccHH
Confidence 666655555555567877621000000 0111223445677777654
Q ss_pred HHHHHHHHHHHHHHhccchhhHhcHHHHHHhcC-CC-cchHHHHHHHHHHHHHHHHhHHHhhcccCCchhhHhhhHHHHH
Q psy11547 334 KPFVILMLYFLIYQFSGVNPVTFYAVNIFKDAG-AH-VNNNLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGV 411 (587)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~-~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~~~~~~~~~~~~~~ 411 (587)
.-++..++... .......|.+.++++.| .+ ...+....+..+..++.-...+++..|+|.++++.++.+..++
T Consensus 211 ~Fll~~~l~~~-----~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~v 285 (400)
T PF03825_consen 211 VFLLAAFLIGI-----SHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAV 285 (400)
T ss_pred HHHHHHHHHHH-----HHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 32222222222 24456667788888877 55 3445566677788999999999999999999999999988888
Q ss_pred HHHHHHHHHHhccCCCCCCCcCccchhHHHHHH----HHHHHHHhccccccceeeeeccCCCCchhhHHHHHHHH-HHHH
Q psy11547 412 SMTGLGLYIFATKDFWPEYKFPAFVSYLPVLML----MTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCA-CHFF 486 (587)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~-~~~g 486 (587)
=..++.... ++.+...... .+-+..++...... ..++.+..|++.|++++++.+.. ..+|
T Consensus 286 R~~l~a~~~--------------~~~~~~~~~~~l~q~lhG~tf~~~~~a~-~~yi~~~~p~~~~at~Q~l~~~~~~Glg 350 (400)
T PF03825_consen 286 RWLLYAYFS--------------DPWPFIVALQLLGQLLHGLTFGLFHAAS-VRYIDRIAPPELRATAQGLYSALSFGLG 350 (400)
T ss_pred HHHHHHHhc--------------CCcHHHHHHHHHHHhhhhHHHHHHHHHH-HHHHHHhCCccchHHHHHHHHHHHhhHH
Confidence 777776611 1222222111 22444444444333 48899999999999999998876 5799
Q ss_pred HHHHHHhhHHHHHhhhhhh------HHHHHHHHHHHHHHHhheeccc
Q psy11547 487 IFLTVKSYNMFQTHLTKEG------TFLMYGCISLLGTIFFYVYLPE 527 (587)
Q Consensus 487 ~~i~~~~~g~l~~~~g~~~------~~~~~~~~~~~~~~~~~~~~~~ 527 (587)
..+|..++|+++|+.|.+. .+.+.+++.++..++.+++.|+
T Consensus 351 ~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~~fk~ 397 (400)
T PF03825_consen 351 GAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVILFKP 397 (400)
T ss_pred HHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 9999999999999987554 3344444444444444444443
|
|
| >KOG4686|consensus | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.5e-22 Score=173.57 Aligned_cols=353 Identities=14% Similarity=0.135 Sum_probs=231.8
Q ss_pred HHHHHHHHHHHHhhhhhhccccccHHHHHhhhcCCCCCccCcchhHHHHHHHHHHHHHHHHhHHHhhhc-cchhHHHHHh
Q psy11547 86 SLSLTLAVFANLGNVNTGMVFGFSAAATSQLISRDSPYRITSDESTWIASLSAIGTMVGCVLGGYMMDL-VGRKMTLIIT 164 (587)
Q Consensus 86 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~i~s~~~l~~~i~~~~~g~l~dr-~Grr~~l~~~ 164 (587)
..+.+.++.+|+..|...++....+....++.. |.+++.++..++.+.|.....+.++++|++.|| +|-|..-++-
T Consensus 40 ~hr~m~lv~mc~lgfgsyfcyd~p~alq~~fk~---d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~ 116 (459)
T KOG4686|consen 40 GHRFMALVFMCLLGFGSYFCYDAPGALQIDFKL---DSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIIL 116 (459)
T ss_pred hhHHHHHHHHHHhcccceeecCCchhhhhhhhc---ccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHH
Confidence 337778888888889999999988888777776 589999999999999999999999999999996 7888776666
Q ss_pred hHHHHHHHHHHHh---cCCCCCCcchhhHHhhhhhhccccccccccceeeeeccCCCcchhHhHHHHHHHHHHHHHHHHh
Q psy11547 165 EVPTILGWALIAL---APSLPSSILPWIFTGRILTGLGSGMVGAPSRIYTAECSQPHLRGMLSSLASFGVSLGVLFEYSL 241 (587)
Q Consensus 165 ~~~~~i~~~~~~~---~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l 241 (587)
++...+|.++.+. .+.+| .++++||+.|+|.-....+...|..-|+..++.+.++|+.....-+|..+-..+
T Consensus 117 ~~fv~~GqliFa~Ggi~~aFw-----~M~~GRF~FGIGgESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~l 191 (459)
T KOG4686|consen 117 CIFVFLGQLIFAAGGISHAFW-----TMLAGRFLFGIGGESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLL 191 (459)
T ss_pred HHHHHHHHHHHHhchHHHHHH-----HHHhhheeeccCchhhhhhhcceeEEEecCccccchhhHHHHHHHhhceeeeee
Confidence 6667777776654 45566 999999999999988889999999999999999999999999999998876666
Q ss_pred hhhh-hHHHHHH---------------H-HHHHHHHHHHHhcccCCCchHHHhcCCHHHHHHHHHHHhCCCcchHHHHhh
Q psy11547 242 GAFL-SWDTVAA---------------I-STIIPVLSIIAGCLMPESPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQG 304 (587)
Q Consensus 242 ~~~l-~wr~~f~---------------~-~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (587)
..++ ..-.-++ . .....++.....-+. .+.+++.+.+-....
T Consensus 192 m~~ly~~~~~~~~~~ghT~LG~~l~~~~~tc~~slical~lg~~------------D~rAerilh~e~g~~--------- 250 (459)
T KOG4686|consen 192 MPFLYDTMGRMFPGVGHTLLGLWLCFEVKTCKQSLICALSLGLS------------DDRAERILHLEEGFL--------- 250 (459)
T ss_pred cHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHhhhh------------hhHHHHHHhhhcCcc---------
Confidence 6655 1111111 0 111111111110000 011111111000000
Q ss_pred HHHHHHHHHHHhhhhhhHhHHhhhcCCchHHHHHHHHHHHHHHhccchhhHhcHHHHHH-hcCCC-cchHHHHHHHHHHH
Q psy11547 305 LYEFSKRQETQKSRNFKETLAAIVEPACLKPFVILMLYFLIYQFSGVNPVTFYAVNIFK-DAGAH-VNNNLAAVIMGIVR 382 (587)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~-~~~~~~~~~~~~~~ 382 (587)
.+. .++-..+.+..+++....++.++.. ....+....|.+++ ..|++ ..++..........
T Consensus 251 -----------Ge~-----pkLtdv~~f~ppfw~~~iicv~yyv-a~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Is 313 (459)
T KOG4686|consen 251 -----------GEE-----PKLTDVNTFYPPFWVLVIICVLYYV-AWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGIS 313 (459)
T ss_pred -----------cCC-----cccccccccCccHHHHHHHHHHHHH-HHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhh
Confidence 000 0011111222233333333332222 23334445555555 48888 55566667777778
Q ss_pred HHHHHhHHHhhcccCCchhhHhhhHHH-HHHHHHHHHHHHhccCCCCCCCcCccchhHHHHHHHHHHHHHhcccccccee
Q psy11547 383 LIFTIASCIMMKKMGRRSLTFISSIGC-GVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWV 461 (587)
Q Consensus 383 ~i~~~~~g~l~d~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (587)
.+.+++.|.++||+|++...+.+..+. .++...+.+ +.+.+.+.+.+++..+.... ...|.
T Consensus 314 av~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~F-----------------t~lsPy~~m~~lGLsysllA-cslWP 375 (459)
T KOG4686|consen 314 AVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFF-----------------TFLSPYTSMTFLGLSYSLLA-CSLWP 375 (459)
T ss_pred hhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHh-----------------hhccHHHHHHHHhhhHHHHH-HHHhh
Confidence 888999999999999987766554443 333333333 11222333333433333322 22356
Q ss_pred eeeccCCCCchhhHHHHHHHHHHHHHHHHHHhhHHHHHhhh
Q psy11547 462 MIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLT 502 (587)
Q Consensus 462 ~~~~~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g 502 (587)
.++.+.|++.-|++.|.++.+.++|-++.|.+.|.+.|.-|
T Consensus 376 ~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g 416 (459)
T KOG4686|consen 376 CVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDG 416 (459)
T ss_pred hhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCC
Confidence 67888999999999999999999999999999999998766
|
|
| >KOG2563|consensus | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.1e-19 Score=170.38 Aligned_cols=393 Identities=15% Similarity=0.148 Sum_probs=265.8
Q ss_pred CCchHHHHHHHHHHHHhhhhhhccccccHHHHHhhhcCCCCCccCcchhHHHHHHHHHHHHHHHHhHHHhhhccchhHHH
Q psy11547 82 GQKVSLSLTLAVFANLGNVNTGMVFGFSAAATSQLISRDSPYRITSDESTWIASLSAIGTMVGCVLGGYMMDLVGRKMTL 161 (587)
Q Consensus 82 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~i~s~~~l~~~i~~~~~g~l~dr~Grr~~l 161 (587)
.|..++||.++++.++-++..++.....+++....... ++ +....-|+.-+|++.+....+++-|+.|++|-|...
T Consensus 37 ~rVy~rRW~vLl~~slL~~SN~~qWI~ya~i~n~~~~~---Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~ 112 (480)
T KOG2563|consen 37 HRVYPRRWVVLLAFSLLNFSNGMQWIQYAPINNYVNSF---YG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTAL 112 (480)
T ss_pred cccchhHhHHHHHHHHHHhcCcchheeehhHHHHHHHH---hc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHH
Confidence 46667788999999999998888888777776666553 66 777788999999999999999999999999999999
Q ss_pred HHhhHHHHHHHHHHHhcCCC-CCCcch--hhHHhhhhhhccccccccccceeeeeccCCCcchhHhHHHHHHHHHHHHHH
Q psy11547 162 IITEVPTILGWALIALAPSL-PSSILP--WIFTGRILTGLGSGMVGAPSRIYTAECSQPHLRGMLSSLASFGVSLGVLFE 238 (587)
Q Consensus 162 ~~~~~~~~i~~~~~~~~~~~-~~~~~~--~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~ 238 (587)
+++..+.++|..+-..+... .+..++ ....+..+.+.+.-........+..-|+++++|..+..+-.++..+|.++|
T Consensus 113 llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg 192 (480)
T KOG2563|consen 113 LLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVG 192 (480)
T ss_pred HHHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHH
Confidence 99999999999998877543 222333 667889999998877777777888889999999999999999999999999
Q ss_pred HHhhhhh----------hHHH--HHHHHHHHHHHHHHHhcc-cCC---CchHHHhcCCHHHHHHHHHHHhCCCcchHHHH
Q psy11547 239 YSLGAFL----------SWDT--VAAISTIIPVLSIIAGCL-MPE---SPSWLLSQGRKDACRNSLRRLRANNYDVEKEV 302 (587)
Q Consensus 239 ~~l~~~l----------~wr~--~f~~~~~~~~~~~~~~~~-~~e---sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (587)
.++...+ .|.. .|+...+++.+.+++..+ .++ +|.-..+.
T Consensus 193 ~llppilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~tPps~s~~------------------------ 248 (480)
T KOG2563|consen 193 FLLPPILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPTPPSASQA------------------------ 248 (480)
T ss_pred hhccceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchhHh------------------------
Confidence 9888777 4655 355444444443333322 333 33110000
Q ss_pred hhHHHHHHHHHHHhhhhhhHhHHhhhcCCchHHHHHHHHHHHHHHhccchhhHhcHHHHHHhcCCC-cchHHHHHHHHHH
Q psy11547 303 QGLYEFSKRQETQKSRNFKETLAAIVEPACLKPFVILMLYFLIYQFSGVNPVTFYAVNIFKDAGAH-VNNNLAAVIMGIV 381 (587)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~ 381 (587)
..++..-.++..+.++++.+.. .++........++.....+...+...|++ ..++....+..++
T Consensus 249 ----------~~~~~~f~~si~~~~~n~~F~i-----l~~~ygi~~g~F~~l~~~l~~~l~~sgY~~~~aG~ig~l~iv~ 313 (480)
T KOG2563|consen 249 ----------ALQDASFPKSIKSCFKNRQFII-----LAICYGIGLGLFNSLSTLLNLALCPSGYEGVFAGYIGALMIVA 313 (480)
T ss_pred ----------hhhcCcHHHHHHHHHcCccHHH-----HHHHHhhhHHHHHHHHHHhhhccccccCCccccchhHHHHHHH
Confidence 0001112445666677665422 12222222222333333333233345665 5678889999999
Q ss_pred HHHHHHhHHHhhcccCC-chhhHhhhHHHHHHHHHHHHHHHhccCCCCCCCcCccchhHHHHHHHHHHHHHhccccccce
Q psy11547 382 RLIFTIASCIMMKKMGR-RSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPW 460 (587)
Q Consensus 382 ~~i~~~~~g~l~d~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (587)
++++++++|.+.||.+. |..+.+......++...+..+... ......+.......+.+..+..|+.+
T Consensus 314 Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~t~~------------~~~~viv~~t~~~~g~~~~~~~Pig~ 381 (480)
T KOG2563|consen 314 GMLGALASGIIADKTKKFKLTTLVLYLFALVGTLMLLTCTLF------------LGDSVIVFTTCGLLGFFGTGYLPIGF 381 (480)
T ss_pred HHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhcc------------CCceEehhhhHHHHHHhhcCCCCcce
Confidence 99999999999999986 444444444444443222221111 12233344445555666777788888
Q ss_pred eeeeccCCCCchhhHHHHHHHHHHHHHHHHHHhhHHHHHhhh----hhhHHHHHHHHHHHHHHHhheecccCC
Q psy11547 461 VMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLT----KEGTFLMYGCISLLGTIFFYVYLPETK 529 (587)
Q Consensus 461 ~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 529 (587)
-+..|..-+..-++..|+.+..+++-+++-..+.+...+..+ +...-+.....+.+..++..++.++.+
T Consensus 382 ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~lva~~r~~y~ 454 (480)
T KOG2563|consen 382 ELGVETTYPVAEGTSSGLLNLSGQIFGVILVFIMGILAEDLGPPGNTFPANIFLTVSALLGAILVAFFRPDYR 454 (480)
T ss_pred eeeeeeccccCCcccceeEEeehhHHHHHHHHHHHHHhhccCCCCCCccchhHhHHHHHHHHHHHhhhhhhHH
Confidence 888888666666899999999999999999999998888776 444445555555555555555444433
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.8e-20 Score=187.54 Aligned_cols=326 Identities=13% Similarity=0.048 Sum_probs=206.0
Q ss_pred CCccCcchhHHHHHHHHHHHHHHHHhHHHhhhc----cch-hHHHHHhhHHHHHHHHHHHhcCCCCCCc-chhhHHhhhh
Q psy11547 122 PYRITSDESTWIASLSAIGTMVGCVLGGYMMDL----VGR-KMTLIITEVPTILGWALIALAPSLPSSI-LPWIFTGRIL 195 (587)
Q Consensus 122 ~~~~s~~~~g~i~s~~~l~~~i~~~~~g~l~dr----~Gr-r~~l~~~~~~~~i~~~~~~~~~~~~~~~-~~~l~~~r~l 195 (587)
.+|++..++|.+.++..+..++..|+.|+++|| +|| |+.++.+.+..+++.++....+++.... .+.+++..++
T Consensus 39 ~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~~~~~~~~~l 118 (444)
T PRK09669 39 VFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKIIYACVTYIL 118 (444)
T ss_pred hcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHH
Confidence 499999999999999999999999999999998 787 5667778888888877766666543211 2355566666
Q ss_pred hhccccccccccceeeeecc-CCCcchhHhHHHHHHHHHHHHHHHHhhhh----h-------hHHHHHHHHHHHHHHHHH
Q psy11547 196 TGLGSGMVGAPSRIYTAECS-QPHLRGMLSSLASFGVSLGVLFEYSLGAF----L-------SWDTVAAISTIIPVLSII 263 (587)
Q Consensus 196 ~G~~~g~~~~~~~~~i~e~~-~~~~r~~~~~~~~~~~~~G~~i~~~l~~~----l-------~wr~~f~~~~~~~~~~~~ 263 (587)
.+.+.......-.++..|+. ++++|++..++...+..+|..+++.+... + +|+..+.+.++++++..+
T Consensus 119 ~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~~~ 198 (444)
T PRK09669 119 LSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVVLFF 198 (444)
T ss_pred HHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHH
Confidence 67666667777778899988 45779988888888888877777654322 2 688888888877776655
Q ss_pred Hhcc-cCCCchHHHhcCCHHHHHHHHHHHhCCCcchHHHHhhHHHHHHHHHHHhhhhhhHhHHhhhcCCchHHHHHHHHH
Q psy11547 264 AGCL-MPESPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQGLYEFSKRQETQKSRNFKETLAAIVEPACLKPFVILMLY 342 (587)
Q Consensus 264 ~~~~-~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (587)
..++ .+|.+.. + + + ++....+.....++++.++......++.
T Consensus 199 ~~~~~~~e~~~~---~-~-~--------------------------------~~~~~~~~~~~~~~n~~~~~l~~~~~~~ 241 (444)
T PRK09669 199 CCFFMTKERYTP---E-V-D--------------------------------NSSSVWKDLKLLLGNSQWRIMFIFNVVL 241 (444)
T ss_pred HHhCCeEEecCC---C-C-c--------------------------------CCCCHHHHHHHHhCCchHHHHHHHHHHH
Confidence 5444 5553210 0 0 0 0111123344556666544433222222
Q ss_pred HHHHHhccchhhHhcHHHHHHhc-CCCcchHHHHHHHHHHHHHHHHhHHHhhcccCCchhhHhhhHHHHHHHHHHHHHHH
Q psy11547 343 FLIYQFSGVNPVTFYAVNIFKDA-GAHVNNNLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIF 421 (587)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~ 421 (587)
...... .....+++.+.. +.............+..+++.++.+++.||+|+|+.+..+.++.+++.+.+...
T Consensus 242 ~~~~~~-----~~~~~~y~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~-- 314 (444)
T PRK09669 242 LTAVVT-----RGGATLYYVNYVLLRPDLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFI-- 314 (444)
T ss_pred HHHHHH-----HhhhhheeeeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHh--
Confidence 222211 111112222221 111122233444556777888899999999999998887766555433322221
Q ss_pred hccCCCCCCCcCccchhHHHHHHHHHHHHHhccccccceeeeeccCC-------CCchhhHHHHHHHHHHHHHHHHHHhh
Q psy11547 422 ATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYP-------TKVRGIVGGLTTCACHFFIFLTVKSY 494 (587)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~r~~~~g~~~~~~~~g~~i~~~~~ 494 (587)
. ..+.+...+...+.+.+.+ ...+..+++++|..+ .+..|...|+.++...+|.++++.+.
T Consensus 315 ~-----------~~~~~~~~~~~~i~g~~~~-~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~ 382 (444)
T PRK09669 315 P-----------PSNVWLIFALNILFNFIQN-LTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVV 382 (444)
T ss_pred C-----------cchHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 0 1123333333333333333 334566688888775 33447778999999999999999999
Q ss_pred HHHHHhhhh
Q psy11547 495 NMFQTHLTK 503 (587)
Q Consensus 495 g~l~~~~g~ 503 (587)
|.+.+..|+
T Consensus 383 g~ll~~~Gy 391 (444)
T PRK09669 383 GWILAWVDY 391 (444)
T ss_pred HHHHHHcCC
Confidence 999988776
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=8.9e-19 Score=176.19 Aligned_cols=395 Identities=11% Similarity=0.055 Sum_probs=221.8
Q ss_pred cHHHHHhhhcCCCCCccCcchhHHHHHHHHHHHHHHHHhHHHhhhcc-chhHHHHHhhHHHHHHHHHHHhcCC-CCCCcc
Q psy11547 109 SAAATSQLISRDSPYRITSDESTWIASLSAIGTMVGCVLGGYMMDLV-GRKMTLIITEVPTILGWALIALAPS-LPSSIL 186 (587)
Q Consensus 109 ~~~~~~~~~~~~~~~~~s~~~~g~i~s~~~l~~~i~~~~~g~l~dr~-Grr~~l~~~~~~~~i~~~~~~~~~~-~~~~~~ 186 (587)
....+|.+..+ ++|++..+.+.+.+.+.....++.+++|+++||+ ||||+++++.++..++.++++...+ ..
T Consensus 28 ~~~~L~~yL~~--~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~~~~~---- 101 (493)
T PRK15462 28 MRALLILYLTN--QLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEIHPS---- 101 (493)
T ss_pred HHHHHHHHHHH--hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhhcchh----
Confidence 34555555433 3899999999999999999999999999999999 9999999999999999887775432 22
Q ss_pred hhhHHhhhhhhccccccccccceeeeeccCCC--cchhHhHHHHHHHHHHHHHHHHhhhhh----hHHHHHHHHHHHHHH
Q psy11547 187 PWIFTGRILTGLGSGMVGAPSRIYTAECSQPH--LRGMLSSLASFGVSLGVLFEYSLGAFL----SWDTVAAISTIIPVL 260 (587)
Q Consensus 187 ~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~--~r~~~~~~~~~~~~~G~~i~~~l~~~l----~wr~~f~~~~~~~~~ 260 (587)
.+.++..+.++|.|...+...+++.|++|++ +|..++++...+.++|..++|.+.+++ ||++.|.+.++..++
T Consensus 102 -~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~l 180 (493)
T PRK15462 102 -FLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIA 180 (493)
T ss_pred -HHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHH
Confidence 3444444555666777788888999999875 689999999999999999999999998 899999987664444
Q ss_pred HHHHhccc----CCCchHHHhcCCHHHHHHHHHHHhCCCcchHHHHh-hHHHHHHHHHHHhhh-------hhhHhHHhh-
Q psy11547 261 SIIAGCLM----PESPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQ-GLYEFSKRQETQKSR-------NFKETLAAI- 327 (587)
Q Consensus 261 ~~~~~~~~----~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-------~~~~~~~~~- 327 (587)
.++..++. ++.... .++...++ +.. ...... ...-.... -.............. ...-+....
T Consensus 181 ~li~~~~~~~~l~~~~~~-~~~~~~~~-~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (493)
T PRK15462 181 GLVIFLCGNRHFTHTRGV-NKKVLRAT-NFL-LPNWGW-LLVLLVATPALITVLFWKEWSVYALIVATIIGLGVLAKIYR 256 (493)
T ss_pred HHHHHHHhhhhhccCCCC-CCCCchhh-hHH-HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333221 111000 00000000 000 000000 00000000 000000000000000 000000000
Q ss_pred --hcCCchHHHHHHH-------HHHHHHHhccchhhHhcHHHHHHh--cCCCcchHHHHHHHHHHHHHHHHhHHHhhccc
Q psy11547 328 --VEPACLKPFVILM-------LYFLIYQFSGVNPVTFYAVNIFKD--AGAHVNNNLAAVIMGIVRLIFTIASCIMMKKM 396 (587)
Q Consensus 328 --~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~ 396 (587)
.++.-++++.... .++..+.-. ...+..|.....+. .|+...+.+...+..+..++.+++..++-.|.
T Consensus 257 ~~~~~~er~r~~~~~~l~~~~~~Fw~~~~Q~-~~sl~lfa~~~vd~~~~g~~ip~~~~qslNp~~ii~l~P~~a~lw~~l 335 (493)
T PRK15462 257 KAENQKQRKELGLIVTLTFFSMLFWAFAQQG-GSSISLYIDRFVNRDMFGYTVPTAMFQSINAFAVMLCGVFLAWVVKES 335 (493)
T ss_pred hcCCHHHHhhHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHhccchhcceeeCHHHHHhHhHHHHHHHHHHHHHHHHHH
Confidence 0000111221111 111111111 11122222111111 24445566777888888888887777775555
Q ss_pred CC--ch-----hhHhhhHHHHHHHHHHHHHHHhccCCCCCCCcCccchhHHHHHHHHHHHHHhccccccceeeeeccCCC
Q psy11547 397 GR--RS-----LTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPT 469 (587)
Q Consensus 397 g~--~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 469 (587)
.+ |. -..+++++++++.+++.+........ ...+..+++...++.........|+..++++++.|+
T Consensus 336 ~~~~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~~~~-------~~~s~~wl~~~~~~~t~gEl~~sPvgls~~~~laP~ 408 (493)
T PRK15462 336 VAGNRTVRIWGKFALGLGLMSAGFCILTLSARWSAMY-------GHSSLPLMVLGLAVMGFAELFIDPVAMSQITRIEIP 408 (493)
T ss_pred hcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCC-------CCcCHHHHHHHHHHHHHHHHHHChHHHHHHHHhChH
Confidence 22 21 25677777788877766533321111 112334455555666677778889988999999999
Q ss_pred CchhhHHHHHHHHH-HHHHHHHHHhhHHHHH------------hhhhhhHHHHHHHHHHHH-HHHhh
Q psy11547 470 KVRGIVGGLTTCAC-HFFIFLTVKSYNMFQT------------HLTKEGTFLMYGCISLLG-TIFFY 522 (587)
Q Consensus 470 ~~r~~~~g~~~~~~-~~g~~i~~~~~g~l~~------------~~g~~~~~~~~~~~~~~~-~~~~~ 522 (587)
+.+|..+|+..... .+|..++..+.+.... ...+...|...+.+.+++ .++.+
T Consensus 409 ~~~g~~mg~w~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~ 475 (493)
T PRK15462 409 GVTGVLTGIYMLLSGAIANYLAGVIADQTSQASFDASGAINYSINAYIEVFDQITWGALACVGVVLM 475 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCccccccchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999986533 4666555555443321 012344666666655555 44333
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=99.84 E-value=5e-20 Score=188.12 Aligned_cols=371 Identities=12% Similarity=0.048 Sum_probs=232.4
Q ss_pred HHHHhhhhhhccccccH-HHHHhhhcCCCCCccCcchhHHHHHHHHHHHHHHHHhHHHhhhccc-----hhHHHHHhhHH
Q psy11547 94 FANLGNVNTGMVFGFSA-AATSQLISRDSPYRITSDESTWIASLSAIGTMVGCVLGGYMMDLVG-----RKMTLIITEVP 167 (587)
Q Consensus 94 ~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~s~~~~g~i~s~~~l~~~i~~~~~g~l~dr~G-----rr~~l~~~~~~ 167 (587)
++...++..|+. +... ...|.+.+ ++|++.++++...+...+...+-.+ +|+++||++ ||+.++++.++
T Consensus 30 ~~~~~y~~qGl~-~l~~~~~~~~l~~---~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~~~~~l 104 (468)
T TIGR00788 30 IGLQVLFVKGIA-GLMRLPLSPMLTD---DLGLDGARYQRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLVLSGLL 104 (468)
T ss_pred HHHHHHHHhhHH-HHhhhhhhHHHHH---hcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHHHHHHHH
Confidence 334445677777 4444 44445554 4999999999999999999999766 999999998 77888888777
Q ss_pred HH-HHHHHHHhcCCCCCCcchhhHHhhhhhhccccccccccceeeeeccCCCcchhHhH---HHHHHHHHHHHHHHHhhh
Q psy11547 168 TI-LGWALIALAPSLPSSILPWIFTGRILTGLGSGMVGAPSRIYTAECSQPHLRGMLSS---LASFGVSLGVLFEYSLGA 243 (587)
Q Consensus 168 ~~-i~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~---~~~~~~~~G~~i~~~l~~ 243 (587)
.+ ++....+..++.. ....+.+++.+++.+...++.-+++.|..+ +++....+ +.....++|.++++.+++
T Consensus 105 ~~~~~~~~l~~~~~~~----~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G 179 (468)
T TIGR00788 105 GSAILYGLLPGKVSSA----KVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGG 179 (468)
T ss_pred HHHHHHHhcccccchH----HHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHH
Confidence 63 4333333334433 133448999999999999999999999998 54544333 333334578888888888
Q ss_pred hh----hHHHHHHHHHHHHHHHHHHhcccCCCchHHHhcCCHHHHHHHHHHHhCCCcchHHHHhhHHHHHHHHHHHhhhh
Q psy11547 244 FL----SWDTVAAISTIIPVLSIIAGCLMPESPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQGLYEFSKRQETQKSRN 319 (587)
Q Consensus 244 ~l----~wr~~f~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (587)
.+ +||..|++.+++.++..+..++++|++.....+.+.++... . . ..........+..
T Consensus 180 ~l~~~~~~~~~f~~~a~l~ll~~~~~~~~~E~~~~~~~~~~~~~~~~------~---------~---~~~~~~~~~~~~~ 241 (468)
T TIGR00788 180 PLLDKTLTRILFLITAALLLLQLFVSNLSKERRAFVRPRIGTYLEMN------M---------A---LLTLGVLANVKVQ 241 (468)
T ss_pred HHHHhcCcchHHHHHHHHHHHHHHHHHhcccccccccccccccchhh------h---------h---hhhhhHHHHHHHH
Confidence 76 89999999988888776666668886311000000000000 0 0 0000000001111
Q ss_pred hhHhHHhhhcCCchHHHHHHHHHHHHHHhccchhhHhcHHHHHHhcCCC-cchHHHHHHHHHHHHHHHHhHHHhhcccCC
Q psy11547 320 FKETLAAIVEPACLKPFVILMLYFLIYQFSGVNPVTFYAVNIFKDAGAH-VNNNLAAVIMGIVRLIFTIASCIMMKKMGR 398 (587)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~ 398 (587)
.+..++.++++..++.....++.+. ...+. ....+. ......|++ ...+......+++.+++..+.+++.+|++.
T Consensus 242 ~~~l~~~l~~~~i~~~l~fifl~~~--~~~~~-~~~~f~-~~~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~ 317 (468)
T TIGR00788 242 ILGLRGAIQLLEIAKPLIFIFLSYA--NLPGA-SGSVFC-ATTQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPY 317 (468)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHHHh--hcCCC-CceeEE-EEcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCH
Confidence 2334445555554443332222111 11111 111111 111346777 556777788889999999999999999999
Q ss_pred chhhHhhhHHHHHHHHHHHHHHHhccCCCCCCCcCccchhHHHHHHHHHHHHHhccccccceeeeeccCCCCchhhHHHH
Q psy11547 399 RSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGL 478 (587)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~ 478 (587)
|+++.++.++.+++.+........ |+.... ....+.......+...+.+....+. ..++.+..|++.+|+.+++
T Consensus 318 r~~l~~~~~l~~~~~~~~~~l~~~----~~~~~g-i~~~~~~~~~~~l~~~~~g~~~~~~-~~~~~~~~p~~~egt~~al 391 (468)
T TIGR00788 318 RLLFGVTTLLYTLSSLFDLILVKR----WNLAFG-ISDEVFVLGDSIIAEVLAQLKFMPF-LVLLARLCPSGCESSVFAL 391 (468)
T ss_pred HHHHHHHHHHHHHHHhCceeeeec----cccccC-CCCeeeeeehhHHHHHHHHHHHccH-HHHHHHhCCCCceehHHHH
Confidence 999888888877766543321100 100000 0112223333344444555555565 4889999999999999999
Q ss_pred HHHHHHHHHHHHHHhhHHHHHhhh
Q psy11547 479 TTCACHFFIFLTVKSYNMFQTHLT 502 (587)
Q Consensus 479 ~~~~~~~g~~i~~~~~g~l~~~~g 502 (587)
.+++.++|..+++.+++.+.+..|
T Consensus 392 ~~s~~~lg~~v~~~~gg~l~~~~g 415 (468)
T TIGR00788 392 LASILHLGSSVSGFLGVLLMETIG 415 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcC
Confidence 999999999999999999999888
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.1e-20 Score=178.32 Aligned_cols=365 Identities=14% Similarity=0.120 Sum_probs=224.2
Q ss_pred ccccHHHHHhhhcCCCCCccCcchhHHHHHHHHHHHHHHHHhHHHhhhccchhHHHHHhhHHH--HHHHHHH-Hh----c
Q psy11547 106 FGFSAAATSQLISRDSPYRITSDESTWIASLSAIGTMVGCVLGGYMMDLVGRKMTLIITEVPT--ILGWALI-AL----A 178 (587)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~s~~~~g~i~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~--~i~~~~~-~~----~ 178 (587)
.+...+..|...++ ..|+|.+++|.+.++..+...+.+++.|.++||+|.||-++..+.+. ..+.... .+ .
T Consensus 23 ~gi~~pF~~iWL~~--~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~pff~~v~~pll~ 100 (412)
T PF01306_consen 23 WGIFLPFFPIWLTQ--VAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGPFFIYVFGPLLQ 100 (412)
T ss_dssp HHHHHHHHHHHHHH--HH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHcc--ccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555442 27899999999999999999999999999999999666544333222 2222221 22 2
Q ss_pred CCCCCCcchhhHHhhhhhhccccccccccceeeeeccCCCcchhHhHHHHHHHHHHHHHHHHhhhhh---hHHHHHHHHH
Q psy11547 179 PSLPSSILPWIFTGRILTGLGSGMVGAPSRIYTAECSQPHLRGMLSSLASFGVSLGVLFEYSLGAFL---SWDTVAAIST 255 (587)
Q Consensus 179 ~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l---~wr~~f~~~~ 255 (587)
.|.+ ...+++-+..|+......|+.-+++.++. ++.+.=.|-.-+..++|.+++..+++.+ +-+..||+..
T Consensus 101 ~n~~----lg~iig~i~l~~~f~~~~~~~Ea~~er~s--r~~~feYG~~R~wGSig~ai~s~~~G~L~~i~p~~~fwi~s 174 (412)
T PF01306_consen 101 SNFW----LGAIIGGIYLGLVFNAGVPLSEAYAERVS--RRNGFEYGRARMWGSIGFAIASLLAGILFNINPNIIFWIAS 174 (412)
T ss_dssp TT-H----HHHHHTTTTTTTTTTTHHHHHHHHHHHHH--HHHSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH----HHHHHHHHHHHHHHcccchHHHHHHHHHH--HHhcCCcchHHHHhhHHHHHHHHHhheeeeeCccHHHHHHH
Confidence 3332 03344455556655556666666655543 2234556666777788888888888877 6678888877
Q ss_pred HHHHHHHHHhcc-cCCCchHHHhcCCHHHHHHHHHHHhCCCcchHHHHhhHHHHHHHHHHHhhhhhhHhHHhhhcCCchH
Q psy11547 256 IIPVLSIIAGCL-MPESPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQGLYEFSKRQETQKSRNFKETLAAIVEPACLK 334 (587)
Q Consensus 256 ~~~~~~~~~~~~-~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (587)
..+++..++.++ -|+.++.....+..+ .++++.+.++..+.++.+++|.
T Consensus 175 ~~~~il~lll~~~~~~~~~~~~~~~~~~------------------------------~~~~~~~~~~~~~l~k~~~fw~ 224 (412)
T PF01306_consen 175 AAAIILLLLLLLLKPDVPPQAEVADALG------------------------------AKKDKVSLKDVLSLFKMRNFWF 224 (412)
T ss_dssp HHHHHHHHHHHSS---SSSSS-SSTTSS------------------------------S------HHHHHHHTTSHHHHH
T ss_pred HHHHHHHHHHHHcCCcCchhhhhhcccc------------------------------cCCCCCcHHHHHHHhcchhHHH
Confidence 766665555444 333322110000000 0001222345567777776655
Q ss_pred HHHHHHHHHHHHHhccchhhHhcHHHHHHhcCCC-----cchHHHHHHHHHHHHHHHHhHHHhhcccCCchhhHhhhHHH
Q psy11547 335 PFVILMLYFLIYQFSGVNPVTFYAVNIFKDAGAH-----VNNNLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGC 409 (587)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-----~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~~~~~~~~~~~~ 409 (587)
-.+........ +.......+.++....-+ ...+...++..+..++...+..++.+|+|.|+.++++..++
T Consensus 225 ~~l~v~g~~~~-----Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~ 299 (412)
T PF01306_consen 225 FVLFVIGVAAI-----YDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIM 299 (412)
T ss_dssp HHHHHHHHHHH-----HHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-----HHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHH
Confidence 33333333222 333443445555543222 11245566667788889999999999999999999999988
Q ss_pred HHHHHHHHHHHHhccCCCCCCCcCccchhHHHHHHHHHHHHHhccccccceeeeeccCCCCchhhHHHHH-HHHHHHHHH
Q psy11547 410 GVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLT-TCACHFFIF 488 (587)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~-~~~~~~g~~ 488 (587)
.+=.+..++ ..+.+.....=.+-+.-+.....+. +-|+++.+|++..++...+. +...++|.+
T Consensus 300 ~iRi~~~~~---------------~~~~~~i~~~klLH~~e~~l~lva~-fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~ 363 (412)
T PF01306_consen 300 AIRIIGSGF---------------ATNPWVISLIKLLHALEFPLLLVAA-FKYITAHFDKRLSATLYLVGFQFAKQIGII 363 (412)
T ss_dssp HHHHHHHHT-----------------SHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHS-GGGHHHHHHHHHTTTHHHHHH
T ss_pred HHHHHHHhh---------------hcchHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCCHhHHHHHHHHHHHHHHHHHHH
Confidence 888777766 2344444444444444444444333 48899999999999999885 577889999
Q ss_pred HHHHhhHHHHHhhhhhhHHHHHHHHHHHHHHHhheecccCC
Q psy11547 489 LTVKSYNMFQTHLTKEGTFLMYGCISLLGTIFFYVYLPETK 529 (587)
Q Consensus 489 i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 529 (587)
+.+.+.|.++|+.|++.++++.+++.+...++..+.+++.+
T Consensus 364 i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~~~~ 404 (412)
T PF01306_consen 364 ILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLKKDK 404 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--SS
T ss_pred HHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeeecCCC
Confidence 99999999999999999999999888887777777665443
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.8e-18 Score=166.11 Aligned_cols=350 Identities=19% Similarity=0.155 Sum_probs=238.6
Q ss_pred hhhhccccccHHHHHhhhcCCCCCccCcchhHHHHHHHHHHHHHHHHhHHHhhhc----cch-hHHHHHhhHHHHHHHHH
Q psy11547 100 VNTGMVFGFSAAATSQLISRDSPYRITSDESTWIASLSAIGTMVGCVLGGYMMDL----VGR-KMTLIITEVPTILGWAL 174 (587)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~i~s~~~l~~~i~~~~~g~l~dr----~Gr-r~~l~~~~~~~~i~~~~ 174 (587)
+............+..+..+ .+|+++..+|.+..+.-+--++.-|+.|.+.|| +|| |+.++.+.+..++.+.+
T Consensus 22 ~~~~~~~~~~~~yLl~fYTd--v~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l 99 (467)
T COG2211 22 FASNFAFGIVVLYLLFFYTD--VFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVL 99 (467)
T ss_pred hHHHHHHHHHHHHHHHHHhc--ccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHH
Confidence 33334444445555555554 589999999999999999999999999999995 886 67888898999999999
Q ss_pred HHhcCCCCCCc-chhhHHhhhhhhccccccccccceeeeeccC-CCcchhHhHHHHHHHHHHHHHHHHhhhhh-------
Q psy11547 175 IALAPSLPSSI-LPWIFTGRILTGLGSGMVGAPSRIYTAECSQ-PHLRGMLSSLASFGVSLGVLFEYSLGAFL------- 245 (587)
Q Consensus 175 ~~~~~~~~~~~-~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~-~~~r~~~~~~~~~~~~~G~~i~~~l~~~l------- 245 (587)
+-.++++.... ....++.-.+.+++.......-.++..|+.+ ++||.+..++-+.+.++|.++...+...+
T Consensus 100 ~F~~p~~~~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~ 179 (467)
T COG2211 100 LFITPDFSMTGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGG 179 (467)
T ss_pred HHcCCCcccCcchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99988644222 3356678888999999998889999999885 67899999999999999977666555444
Q ss_pred ----hHHHHHHHHHHHHHHHHHHhcc-cCCCchHHHhcCCHHHHHHHHHHHhCCCcchHHHHhhHHHHHHHHHHHhhhhh
Q psy11547 246 ----SWDTVAAISTIIPVLSIIAGCL-MPESPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQGLYEFSKRQETQKSRNF 320 (587)
Q Consensus 246 ----~wr~~f~~~~~~~~~~~~~~~~-~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (587)
||+..-.+.++++.+..+..++ ++|.+.. ....++ ..+....
T Consensus 180 ~~~~g~~~~~~~~~vi~~i~~l~~~~~v~ER~~~---~~~~~~------------------------------~~~~~~~ 226 (467)
T COG2211 180 DKALGYQGTALVLGVIGVILLLFCFFNVKERVVE---TQPTKT------------------------------GVKLKLK 226 (467)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHhhcccCc---cccCcc------------------------------cccccHH
Confidence 7888888888888888777776 7775420 000000 0011112
Q ss_pred hHhHHhhhcCCchHHHHHHHHHHHHHHhccchhhHhcHHHHHHh-cCCC-cchHHHHHHHHHHHHHHHHhHHHhhcccCC
Q psy11547 321 KETLAAIVEPACLKPFVILMLYFLIYQFSGVNPVTFYAVNIFKD-AGAH-VNNNLAAVIMGIVRLIFTIASCIMMKKMGR 398 (587)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~-~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~ 398 (587)
+.+...++++.++...+..++.... .+.......++.+. .|.+ ..+...........+++.++..++.+|+|+
T Consensus 227 ~~~~~~~~Nrp~~~~l~~~l~~~~~-----~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gk 301 (467)
T COG2211 227 DSFLLIFKNRPLLLLLLMNLLLFIA-----FNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGK 301 (467)
T ss_pred HHHHHHHccchHHHHHHHHHHHHHH-----HHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhch
Confidence 2233455566554433322222222 22222222222222 2222 234455555666677779999999999999
Q ss_pred chhhHhhhHHHHHHHHHHHHHHHhccCCCCCCCcCccchhHHHHHHHHHHHHHhccccccceeeeeccCC-------CCc
Q psy11547 399 RSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYP-------TKV 471 (587)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~ 471 (587)
|+++.++.++.+++.+++.+... +..+..++..++... ......+++|++++|... .+.
T Consensus 302 k~~~~~~~~~~~i~~~~~~f~~~-------------~~~~l~~~~~~i~~~-g~~~~~~l~wam~~d~vDyge~~TG~R~ 367 (467)
T COG2211 302 KKLFLIGLLLLAVGYLLLYFTPA-------------GSVVLIVVALIIAGV-GTGIANPLPWAMVADTVDYGEWKTGVRR 367 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcC-------------cchHHHHHHHHHHHH-HhhccccccHHHhcchhhHHHHHhCCCc
Confidence 99999999988888888777321 122333333333333 334445778888888753 344
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhHHHHHhhhh
Q psy11547 472 RGIVGGLTTCACHFFIFLTVKSYNMFQTHLTK 503 (587)
Q Consensus 472 r~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~ 503 (587)
-|...|...++.-+|.+++..+.|++.+..|+
T Consensus 368 eGi~~s~~tF~~K~g~ala~~~~g~~L~~~Gy 399 (467)
T COG2211 368 EGIVYSGMTFFRKLGLALAGFIPGWILGAIGY 399 (467)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 58889999999999999999999999887764
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=99.81 E-value=2e-18 Score=175.73 Aligned_cols=328 Identities=16% Similarity=0.192 Sum_probs=228.0
Q ss_pred CccCcchhHHHHHHHHHHHHHHHHhHHHhhh----ccchh-HHHHHhhHHHHHHHHHHHhc-C-CCCCC-cchhhHHhhh
Q psy11547 123 YRITSDESTWIASLSAIGTMVGCVLGGYMMD----LVGRK-MTLIITEVPTILGWALIALA-P-SLPSS-ILPWIFTGRI 194 (587)
Q Consensus 123 ~~~s~~~~g~i~s~~~l~~~i~~~~~g~l~d----r~Grr-~~l~~~~~~~~i~~~~~~~~-~-~~~~~-~~~~l~~~r~ 194 (587)
+++++...|.+..+..+..++..|+.|.++| |+||| +.++++.++.+++.+++... + +.... ....+.+.-+
T Consensus 32 ~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~~~~~~~~~~ 111 (428)
T PF13347_consen 32 LGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAKLVWLFVFYI 111 (428)
T ss_pred cCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhHHHHHHHHHH
Confidence 7999999999999999999999999999999 89965 56667888888888888766 4 22211 1123566777
Q ss_pred hhhccccccccccceeeeeccC-CCcchhHhHHHHHHHHHHHHHHHHhhhhh-----------hHHHHHHHHHHHHHHHH
Q psy11547 195 LTGLGSGMVGAPSRIYTAECSQ-PHLRGMLSSLASFGVSLGVLFEYSLGAFL-----------SWDTVAAISTIIPVLSI 262 (587)
Q Consensus 195 l~G~~~g~~~~~~~~~i~e~~~-~~~r~~~~~~~~~~~~~G~~i~~~l~~~l-----------~wr~~f~~~~~~~~~~~ 262 (587)
+..++.......-.++..|+.+ +++|.+..+.-..+..+|.++...+...+ +|++..++.+++.++..
T Consensus 112 l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~ 191 (428)
T PF13347_consen 112 LFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLVFF 191 (428)
T ss_pred HHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHHHh
Confidence 7788899999999999999997 57899999999888888887555555443 49999999888888877
Q ss_pred HHhcc-cCCCchHHHhcCCHHHHHHHHHHHhCCCcchHHHHhhHHHHHHHHHHHhhhhhhHhHHhhhcCCchHHHHHHHH
Q psy11547 263 IAGCL-MPESPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQGLYEFSKRQETQKSRNFKETLAAIVEPACLKPFVILML 341 (587)
Q Consensus 263 ~~~~~-~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (587)
++..+ .+|.++. .+ +++++..-.+..+..+++|.++......++
T Consensus 192 ~i~~~~~ke~~~~------~~-----------------------------~~~~~~~~~~~~~~~~~nr~~~~l~~~~~~ 236 (428)
T PF13347_consen 192 LITFFFVKERSVE------VT-----------------------------EQEKKISLRDSLRSLFRNRPFRILLLAFFL 236 (428)
T ss_pred hhhhheeeecccc------cc-----------------------------ccccccccccchhhhcccchHHHHHHHHHH
Confidence 76665 6772110 00 000011223334455555554332222222
Q ss_pred HHHHHHhccchhhHhcHHHHHHh-cCCCcchHHHHHHHHHHHHHHHHhHHHhhcccCCchhhHhhhHHHHHHHHHHHHHH
Q psy11547 342 YFLIYQFSGVNPVTFYAVNIFKD-AGAHVNNNLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYI 420 (587)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~ 420 (587)
... +........+++.+. .+.+........+..+..+++.++.++++||+|+|+.+..+.++.+++.+++.+..
T Consensus 237 ~~~-----~~~~~~~~~~y~~~~vl~~~~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~ 311 (428)
T PF13347_consen 237 QWL-----AFALMNTFLPYYFTYVLGNEGLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLG 311 (428)
T ss_pred HHh-----hhhhhhhHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHH
Confidence 222 223333344445444 33333445666677888999999999999999999999999999888887776633
Q ss_pred HhccCCCCCCCcCccchhHHHHHHHHHHHHHhccccccceeeeeccCCC-------CchhhHHHHHHHHHHHHHHHHHHh
Q psy11547 421 FATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPT-------KVRGIVGGLTTCACHFFIFLTVKS 493 (587)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-------~~r~~~~g~~~~~~~~g~~i~~~~ 493 (587)
.. +.+...+...+.+.+.+ ......+++.+|+.+. +..|...|+.++...++..+++.+
T Consensus 312 ~~-------------~~~~~~i~~~l~gi~~~-~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i 377 (428)
T PF13347_consen 312 PG-------------SPWLVLILFILAGIGYG-AFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAI 377 (428)
T ss_pred hh-------------hHHHHHHHHHHhHhhhc-ccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHH
Confidence 11 33444444444444444 3446667889988763 345899999999999999999999
Q ss_pred hHHHHHhhhhh
Q psy11547 494 YNMFQTHLTKE 504 (587)
Q Consensus 494 ~g~l~~~~g~~ 504 (587)
.+.+.+..|+.
T Consensus 378 ~g~~l~~~Gy~ 388 (428)
T PF13347_consen 378 VGLLLALVGYD 388 (428)
T ss_pred HHHHHHHhCcC
Confidence 99998776653
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=7.4e-18 Score=172.13 Aligned_cols=326 Identities=11% Similarity=0.018 Sum_probs=199.1
Q ss_pred CCccCcchhHHHHHHHHHHHHHHHHhHHHhhhc----cchh-HHHHHhhHHHHHHHHHHHhcCCCCCCc-chhhHHhhhh
Q psy11547 122 PYRITSDESTWIASLSAIGTMVGCVLGGYMMDL----VGRK-MTLIITEVPTILGWALIALAPSLPSSI-LPWIFTGRIL 195 (587)
Q Consensus 122 ~~~~s~~~~g~i~s~~~l~~~i~~~~~g~l~dr----~Grr-~~l~~~~~~~~i~~~~~~~~~~~~~~~-~~~l~~~r~l 195 (587)
..|+++..+|.+..+.-+--++..|+.|.++|| +||| +.++++.+..+++.+++-..++..... ...+++.-++
T Consensus 39 ~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~y~~~~~~~ 118 (460)
T PRK11462 39 IFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMIYAAITYTL 118 (460)
T ss_pred hhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHH
Confidence 489999999999999999999999999999995 7975 667778788888877766666432212 2245556666
Q ss_pred hhccccccccccceeeeeccC-CCcchhHhHHHHHHHHHHHHHHHHhhhhh-----------hHHHHHHHHHHHHHHHHH
Q psy11547 196 TGLGSGMVGAPSRIYTAECSQ-PHLRGMLSSLASFGVSLGVLFEYSLGAFL-----------SWDTVAAISTIIPVLSII 263 (587)
Q Consensus 196 ~G~~~g~~~~~~~~~i~e~~~-~~~r~~~~~~~~~~~~~G~~i~~~l~~~l-----------~wr~~f~~~~~~~~~~~~ 263 (587)
..++.......-.++..|..+ ++||++..++...+..+|..+++.+...+ +|+....+.+++.+++.+
T Consensus 119 ~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~~~ 198 (460)
T PRK11462 119 LTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMMLA 198 (460)
T ss_pred HHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHH
Confidence 788888888888888899886 78899999999999998887776654332 477777777777666655
Q ss_pred Hhcc-cCCCchHHHhcCCHHHHHHHHHHHhCCCcchHHHHhhHHHHHHHHHHHhhhhhhHhHHhhhcCCchHHHHHHHHH
Q psy11547 264 AGCL-MPESPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQGLYEFSKRQETQKSRNFKETLAAIVEPACLKPFVILMLY 342 (587)
Q Consensus 264 ~~~~-~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (587)
+.+. .+|.++. +.+ +...++.....++++.++. +....++
T Consensus 199 i~~~~~kE~~~~-----~~~---------------------------------~~~~~~~l~~~~~Nk~~~~-l~~~~~~ 239 (460)
T PRK11462 199 FCFFTTKERVEA-----PPT---------------------------------TTSMREDLRDIWQNDQWRI-VGLLTIF 239 (460)
T ss_pred HHHhcceeccCC-----Ccc---------------------------------CCCHHHHHHHHhCChHHHH-HHHHHHH
Confidence 5444 5553210 000 0001122333444444332 2222112
Q ss_pred HHHHHhccchhhHhcHHHHHHhcCCCcchHHHHHHHHHHHHHHHHhHHHhhcccCCchhhHhhhHHHHHHHHHHHHHHHh
Q psy11547 343 FLIYQFSGVNPVTFYAVNIFKDAGAHVNNNLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFA 422 (587)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (587)
.............+|..+++ +.............+..+++.++++++.||+++|+.+..+..+.++..+++.+..
T Consensus 240 ~~~~~~~~~~~~~y~~~y~~---g~~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~-- 314 (460)
T PRK11462 240 NILAVCVRGGAMMYYVTWIL---GTPEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVP-- 314 (460)
T ss_pred HHHHHHHHHhHhhhhhhhhc---CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhc--
Confidence 21111111222233333321 2222223455666778888999999999999998887654443333332222210
Q ss_pred ccCCCCCCCcCccchhHHHHHHHHHHHHHhccccccceeeeeccCC-------CCchhhHHHHHHHHHHHHHHHHHHhhH
Q psy11547 423 TKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYP-------TKVRGIVGGLTTCACHFFIFLTVKSYN 495 (587)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~r~~~~g~~~~~~~~g~~i~~~~~g 495 (587)
........+..++.+.+. ....+..+++++|..+ .+..|...+...+...+|.++++.+.|
T Consensus 315 -----------~~~~~~~~~~~~l~g~~~-~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g 382 (460)
T PRK11462 315 -----------MQASITMFVFIFVIGVLH-QLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIG 382 (460)
T ss_pred -----------hhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 011222222222222222 2333444566666654 333356667777889999999999999
Q ss_pred HHHHhhhh
Q psy11547 496 MFQTHLTK 503 (587)
Q Consensus 496 ~l~~~~g~ 503 (587)
.+.+..|+
T Consensus 383 ~iL~~~Gy 390 (460)
T PRK11462 383 WMLAYGGY 390 (460)
T ss_pred HHHHHcCC
Confidence 99887665
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.9e-17 Score=167.11 Aligned_cols=355 Identities=16% Similarity=0.146 Sum_probs=229.9
Q ss_pred chhHHHHHHHHHHHHHHHHhHHHhhhccchhHH-HHHhhHHHHHHHHHHHhc-CCCCCCcchhhHHhhhhhhcccccccc
Q psy11547 128 DESTWIASLSAIGTMVGCVLGGYMMDLVGRKMT-LIITEVPTILGWALIALA-PSLPSSILPWIFTGRILTGLGSGMVGA 205 (587)
Q Consensus 128 ~~~g~i~s~~~l~~~i~~~~~g~l~dr~Grr~~-l~~~~~~~~i~~~~~~~~-~~~~~~~~~~l~~~r~l~G~~~g~~~~ 205 (587)
+-.++..++..+..++..|+.|.++|+-|+||. +.+..++..+++.+..+. ++.+ +...+.-++.-++.+....
T Consensus 70 s~~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~----~~~~~l~iia~v~~~~~~v 145 (477)
T PF11700_consen 70 SLWLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQW----WLALVLFIIANVGYEASNV 145 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchH----HHHHHHHHHHHHHHHHHHH
Confidence 345788899999999999999999999996654 555556666677777765 3322 1444455555566777778
Q ss_pred ccceeeeeccCCCcc--------------------------hhHhHHHHHHHHHHHHHHHHhhhhh------------hH
Q psy11547 206 PSRIYTAECSQPHLR--------------------------GMLSSLASFGVSLGVLFEYSLGAFL------------SW 247 (587)
Q Consensus 206 ~~~~~i~e~~~~~~r--------------------------~~~~~~~~~~~~~G~~i~~~l~~~l------------~w 247 (587)
...+++.|..+++++ ++..+.-.....+|.++.-.+...+ +-
T Consensus 146 fyna~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~ 225 (477)
T PF11700_consen 146 FYNAYLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAI 225 (477)
T ss_pred HHHHHhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhh
Confidence 889999999998888 8999988888888888877776655 24
Q ss_pred HHHHHHHHHHHHHHHHHh-cccCCCchHHHhcCCHHHHHHHHHHHhCCCcchHHHHhhHHHHHHHHHHHhhhhhhHhHHh
Q psy11547 248 DTVAAISTIIPVLSIIAG-CLMPESPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQGLYEFSKRQETQKSRNFKETLAA 326 (587)
Q Consensus 248 r~~f~~~~~~~~~~~~~~-~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (587)
|..+.+.++.-++..+.. +++||.|+....+..... -....+..++.
T Consensus 226 r~~~~~~a~ww~vfsiP~~~~~~~~~~~~~~~~~~~~--------------------------------~~~g~~~l~~t 273 (477)
T PF11700_consen 226 RVAFLIVALWWLVFSIPLFLWLPDRPGPRPLPSGSSY--------------------------------LRFGFKRLWRT 273 (477)
T ss_pred hHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCcchhH--------------------------------HHHHHHHHHHH
Confidence 888888887766555444 448887642000000000 00111222222
Q ss_pred hhcCCchHHHHHHHHHHHHHHhccchhhHhcHHHHHH-hcCCC-cchHHHHHHHHHHHHHHHHhHHHhhcccCCc--hhh
Q psy11547 327 IVEPACLKPFVILMLYFLIYQFSGVNPVTFYAVNIFK-DAGAH-VNNNLAAVIMGIVRLIFTIASCIMMKKMGRR--SLT 402 (587)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~-~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~~--~~~ 402 (587)
+++.+..+.++..++.++ ....+...+......+.. +.|++ .+......+..+.+++|+++.+++.||+|.| +++
T Consensus 274 ~k~~~~~~~~~~fLia~~-l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l 352 (477)
T PF11700_consen 274 FKEIRKLRQLFLFLIAYF-LYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTL 352 (477)
T ss_pred HHHHHhChHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHH
Confidence 322222222233222222 223345555555555555 58888 5556777788899999999999999999988 666
Q ss_pred HhhhHHHHHHHHHHHHHHHhccCCCCCCCcCccchhHHHHHHHHHHHHHhccccccceeeeeccCCCCchhhHHHHHHHH
Q psy11547 403 FISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCA 482 (587)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~ 482 (587)
..+.++..+.. +.+.+...+... ...+.+... .+.++.+.+..+..+..-++.+++.|++..+..+|+....
T Consensus 353 ~~~l~~~~~i~-~~g~~G~~~~~~------g~~~~~~f~-~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~ 424 (477)
T PF11700_consen 353 LISLILWIIIP-LYGLFGFWPSFF------GLKSPWEFW-VLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAIT 424 (477)
T ss_pred HHHHHHHHHHH-HHHHHHhhhccc------CcccHHHHH-HHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHH
Confidence 66555542222 222221110000 012333333 3333444444555667779999999999999999999999
Q ss_pred HHHHHHHHHHhhHHHHHhhh-hhhHHHHHHHHHHHHHHHhheecccC
Q psy11547 483 CHFFIFLTVKSYNMFQTHLT-KEGTFLMYGCISLLGTIFFYVYLPET 528 (587)
Q Consensus 483 ~~~g~~i~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (587)
+...+++||.++|.+.+.+| .+..+....++.+++.++. ..++..
T Consensus 425 gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll-~~v~~~ 470 (477)
T PF11700_consen 425 GKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILL-FFVDVE 470 (477)
T ss_pred HHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHH-hhccch
Confidence 99999999999999999987 6667777777776666654 444443
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.4e-18 Score=173.30 Aligned_cols=325 Identities=10% Similarity=0.037 Sum_probs=190.3
Q ss_pred CCccCcchhHHHHHHHHHHHHHHHHhHHHhhhcc----chhH-HHHHhhHHHHHHHHHHHhcC-CCCCCc-chhhHHhhh
Q psy11547 122 PYRITSDESTWIASLSAIGTMVGCVLGGYMMDLV----GRKM-TLIITEVPTILGWALIALAP-SLPSSI-LPWIFTGRI 194 (587)
Q Consensus 122 ~~~~s~~~~g~i~s~~~l~~~i~~~~~g~l~dr~----Grr~-~l~~~~~~~~i~~~~~~~~~-~~~~~~-~~~l~~~r~ 194 (587)
.+|++..++|.+.+...+..++..++.|+++||. |||| .++++.+...+.+++....+ ...... .+.+++.-+
T Consensus 38 ~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (448)
T PRK09848 38 VAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWSHSSKVVYAYLTYM 117 (448)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcCCCCcchHHHHHHHHHH
Confidence 3799999999999999999999999999999996 7766 44666665655555542222 221111 113444556
Q ss_pred hhhccccccccccceeeeeccCC-CcchhHhHHHHHH-----HHHHHHHHHHhhhhh------hHHHHHHHHHHHHHHHH
Q psy11547 195 LTGLGSGMVGAPSRIYTAECSQP-HLRGMLSSLASFG-----VSLGVLFEYSLGAFL------SWDTVAAISTIIPVLSI 262 (587)
Q Consensus 195 l~G~~~g~~~~~~~~~i~e~~~~-~~r~~~~~~~~~~-----~~~G~~i~~~l~~~l------~wr~~f~~~~~~~~~~~ 262 (587)
+.+++.+...+...++..+...+ ++|.+..++-..+ ..+|..++|.++... +|.....+.++++++..
T Consensus 118 ~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~~~~~v~~~~~~ 197 (448)
T PRK09848 118 GLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIKNSSPEEMVSVYHFWTIVLAIAGMVLY 197 (448)
T ss_pred HHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHH
Confidence 77888888887777777776644 5688876665543 335555666655443 12222223333333333
Q ss_pred HHhc-ccCCCchHHHhcCCHHHHHHHHHHHhCCCcchHHHHhhHHHHHHHHHHHhhhhhhHhHHhhhcCCchHHHHHHHH
Q psy11547 263 IAGC-LMPESPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQGLYEFSKRQETQKSRNFKETLAAIVEPACLKPFVILML 341 (587)
Q Consensus 263 ~~~~-~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (587)
++.+ ..||++.. +.+ +....+.+...++++.++...+..++
T Consensus 198 ~~~~~~~~e~~~~---~~~-----------------------------------~~~~~~~~~~l~~n~~f~~~~~~~~~ 239 (448)
T PRK09848 198 FICFKSTRENVVR---IVA-----------------------------------QPSLKISLQTLKRNRPLFMLCIGALC 239 (448)
T ss_pred HHHHcCcEeccCC---Ccc-----------------------------------CCCHHHHHHHHhCCchHHHHHHHHHH
Confidence 3332 25664310 000 00112234445666654433222222
Q ss_pred HHHHHHhccchhhHhcHHHHHHh-cCCCcchHHH-HHHHHHHHHHHHHhHHHhhcccCCchhhHhhhHHHHHHHHHHHHH
Q psy11547 342 YFLIYQFSGVNPVTFYAVNIFKD-AGAHVNNNLA-AVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLY 419 (587)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~-~~~~~~~~~i~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~ 419 (587)
... .........++++++ .|.+...... .....++.+++.++.+++.||+|+|+.+.++.++.+++.+.+.+.
T Consensus 240 ~~~-----~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~ 314 (448)
T PRK09848 240 VLI-----STFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWV 314 (448)
T ss_pred HHH-----HHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHc
Confidence 222 122233334444443 3443222222 233345677888999999999999999998888777776655431
Q ss_pred HHhccCCCCCCCcCccchhHHHHHHHHHHHHHhccccccceeeeeccCCCC-------chhhHHHHHHHHHHHHHHHHHH
Q psy11547 420 IFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTK-------VRGIVGGLTTCACHFFIFLTVK 492 (587)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-------~r~~~~g~~~~~~~~g~~i~~~ 492 (587)
. ....+.......+.+.+.... .+..+++.+|..|.+ .+|...|+.++...+|..+++.
T Consensus 315 ~-------------~~~~~~~~~~~~l~g~G~~~~-~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~ 380 (448)
T PRK09848 315 S-------------VWSLPVALVALAIASIGQGVT-MTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGS 380 (448)
T ss_pred C-------------chhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHH
Confidence 1 112233333333333333333 344457777776643 4589999999999999999999
Q ss_pred hhHHHHHhhhh
Q psy11547 493 SYNMFQTHLTK 503 (587)
Q Consensus 493 ~~g~l~~~~g~ 503 (587)
+.+.+.+..|+
T Consensus 381 i~g~~l~~~G~ 391 (448)
T PRK09848 381 IPAFILGLSGY 391 (448)
T ss_pred HHHHHHHHcCC
Confidence 99999877665
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.2e-16 Score=151.00 Aligned_cols=385 Identities=14% Similarity=0.140 Sum_probs=243.7
Q ss_pred CccCcchhHHHHHHHHHHHHHHHHhHHHhhhcc-chhHHHHHhhHHHHHHHHHHHhcC--CCCCCcchhhHHhhhhhhcc
Q psy11547 123 YRITSDESTWIASLSAIGTMVGCVLGGYMMDLV-GRKMTLIITEVPTILGWALIALAP--SLPSSILPWIFTGRILTGLG 199 (587)
Q Consensus 123 ~~~s~~~~g~i~s~~~l~~~i~~~~~g~l~dr~-Grr~~l~~~~~~~~i~~~~~~~~~--~~~~~~~~~l~~~r~l~G~~ 199 (587)
+|+++++..-+.+.|..-.-+..+++|+++||+ |+|+++..|.+++.+|.++.+.+. +.. .++++-.+.++|
T Consensus 56 Lg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~~~~-----gl~i~L~~I~iG 130 (498)
T COG3104 56 LGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPG-----GLYIGLALIIVG 130 (498)
T ss_pred CCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhcccccccc-----HHHHHHHHHHhc
Confidence 679999998899988888888899999999995 999999999999999999999985 666 899999999999
Q ss_pred ccccccccceeeeeccCCCc--chhHhHHHHHHHHHHHHHHHHhhhhh----hHHHHHHHHHHHHHHHHHHhcccCC---
Q psy11547 200 SGMVGAPSRIYTAECSQPHL--RGMLSSLASFGVSLGVLFEYSLGAFL----SWDTVAAISTIIPVLSIIAGCLMPE--- 270 (587)
Q Consensus 200 ~g~~~~~~~~~i~e~~~~~~--r~~~~~~~~~~~~~G~~i~~~l~~~l----~wr~~f~~~~~~~~~~~~~~~~~~e--- 270 (587)
.|..-+....++.|.+|+++ |-..++++.++.++|.+++|++.+++ +|...|.+.++-..+.++..++.+.
T Consensus 131 ~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~r~~~ 210 (498)
T COG3104 131 TGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGRRHVK 210 (498)
T ss_pred cccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHccchhc
Confidence 99999999999999998643 67789999999999999999999998 9999999988777766665544321
Q ss_pred ------CchHHHhcCCHHHHHHHHHHHhCC---CcchHHHHhhHHHHHHHHHHHhhhhhhHhHHhhhcCC----------
Q psy11547 271 ------SPSWLLSQGRKDACRNSLRRLRAN---NYDVEKEVQGLYEFSKRQETQKSRNFKETLAAIVEPA---------- 331 (587)
Q Consensus 271 ------sp~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 331 (587)
.|..+..+................ .....+........... ........+.++.++
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i-----~~~~~~~~~~~~~~~~~~er~r~~~ 285 (498)
T COG3104 211 GIGGVPDPNPLSFNFLLPVLGGLVVMILAALLTLLLNQNTFSGVLLVISI-----LIAIIYFAEAFRSPKVFDERRRLLA 285 (498)
T ss_pred CCCCCCCccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHhccCccHHHHHHHHH
Confidence 111110000000000000000000 00000000000000000 000000000000000
Q ss_pred chHHHHHHHHHHHHHHhccchhhHhcHHHHHHh--cCCCcchHHHHHHHHHHHHHHHHhHHHhhcccCCc-------hhh
Q psy11547 332 CLKPFVILMLYFLIYQFSGVNPVTFYAVNIFKD--AGAHVNNNLAAVIMGIVRLIFTIASCIMMKKMGRR-------SLT 402 (587)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~~-------~~~ 402 (587)
....++...+++..+.- ..+.+..|.....+. .|++....+..++..+.-++.+++..++..+.+++ .-+
T Consensus 286 ~~~Lfl~~~iFW~~~~Q-~~ssl~~~a~~~v~~~~~g~~vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KF 364 (498)
T COG3104 286 AIPLFLFAVIFWALYEQ-MGSSLNLYADRNVNRQIFGFEVPPAWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKF 364 (498)
T ss_pred HHHHHHHHHHHHHHHHh-ccchHHHHHHHhhcccccceecCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHH
Confidence 01111122222222222 233344444444333 34556677888888888888888887877774433 124
Q ss_pred HhhhHHHHHHHHHHHHHHHhccCCCCCCCcCccchhHHHHHHHHHHHHHhccccccceeeeeccCCCCchhhHHHHHHHH
Q psy11547 403 FISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCA 482 (587)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~ 482 (587)
.++.++++.+.+++.........+ ....+..+.+...++.........|+..+++....|+...+..+++....
T Consensus 365 alGl~l~g~~fl~l~~~~~~~~~~------~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt 438 (498)
T COG3104 365 ALGLILAGLGFLILLLAGIWFGGP------SGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPALKSFIMAMWFLT 438 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCC------CCCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHH
Confidence 456666666666666542221110 12345666677777778888888898889999999999999999988888
Q ss_pred HHHHHHHHHHhhHH------HHHhhhhhhHHHHHHHHHHHHHHHhhee
Q psy11547 483 CHFFIFLTVKSYNM------FQTHLTKEGTFLMYGCISLLGTIFFYVY 524 (587)
Q Consensus 483 ~~~g~~i~~~~~g~------l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 524 (587)
...+..++..+.+. ..+.......|+..+.+.++..+.....
T Consensus 439 ~a~~~~l~g~va~~~~~~~~~~~~~~~~~~F~~~g~v~i~~~~~~~~~ 486 (498)
T COG3104 439 VAAGQTLGGQVAGLTAVTDPAYTAFIEGRVFGTIGVVAIVIGILLLLL 486 (498)
T ss_pred HHHHHHhhceecccccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHh
Confidence 88888887777663 3344445567777777766666554443
|
|
| >KOG2325|consensus | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.6e-17 Score=162.72 Aligned_cols=392 Identities=15% Similarity=0.168 Sum_probs=227.2
Q ss_pred HHHHHhhhhhhccccccHHH-HHhhhcCCCCCccCcchhHHHHHHHHHHHHHHHHhHHHhhhccch-hHHHHHhhHHHHH
Q psy11547 93 VFANLGNVNTGMVFGFSAAA-TSQLISRDSPYRITSDESTWIASLSAIGTMVGCVLGGYMMDLVGR-KMTLIITEVPTIL 170 (587)
Q Consensus 93 ~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~s~~~~g~i~s~~~l~~~i~~~~~g~l~dr~Gr-r~~l~~~~~~~~i 170 (587)
.++.+..++.+...++..+. -|.+.+- |.+.+.+..|++.++..+|.+++++.+|+...|.|. |+.+++|.++..+
T Consensus 37 ~l~~~~sfl~~v~~sI~~~s~wpYl~~l--D~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~ 114 (488)
T KOG2325|consen 37 YLALLNSFLVAVQFSIYLTSMWPYLQKL--DPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAII 114 (488)
T ss_pred HHHHHHHHHHhhhheEEEeecchhhhhc--CCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHH
Confidence 33334444445555444433 3444443 577888899999999999999999999999999997 8889999999999
Q ss_pred HHHHHHhcCCCCCCcchhhHHhhhhhhccccccccccceeeeeccCCCcchhHhHHHHHHHHHHHHHHHHhhhhh-----
Q psy11547 171 GWALIALAPSLPSSILPWIFTGRILTGLGSGMVGAPSRIYTAECSQPHLRGMLSSLASFGVSLGVLFEYSLGAFL----- 245 (587)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l----- 245 (587)
++++........+...+.++++|++.|+|.|.. ....+|+++....++|.++++....+..+|.++||.++..+
T Consensus 115 g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~n~-a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~ 193 (488)
T KOG2325|consen 115 GNLLYLALAYVPNGVKYLMLVARILTGVGVGNF-AVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGE 193 (488)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHcCcCcccH-HHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcC
Confidence 999984332222223448999999999987654 78899999988889999999999999999999999988877
Q ss_pred -h-----------HHHHHHHHHHHHHHHHHHhcc-cCCCchHHHhcCCHHHHHHHHHHHhCCCcchHHHHhhHHHHHHHH
Q psy11547 246 -S-----------WDTVAAISTIIPVLSIIAGCL-MPESPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQGLYEFSKRQ 312 (587)
Q Consensus 246 -~-----------wr~~f~~~~~~~~~~~~~~~~-~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (587)
| +..+-|+.+++.++.+++.++ +.|.++.-..++...+
T Consensus 194 ~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~~~~~~~~~~~----------------------------- 244 (488)
T KOG2325|consen 194 KGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYRGIIDKKKRSV----------------------------- 244 (488)
T ss_pred CceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeecccCccccccccc-----------------------------
Confidence 1 245667777777777666655 7776532111100000
Q ss_pred HHHhhhhhhHhHHhhhcCCchHH-HHHHHHHHHHHHhccchhhHhcHHHHHHhcCCC-cch-HHHHHHHHHHHHHH---H
Q psy11547 313 ETQKSRNFKETLAAIVEPACLKP-FVILMLYFLIYQFSGVNPVTFYAVNIFKDAGAH-VNN-NLAAVIMGIVRLIF---T 386 (587)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~-~~~~~~~~~~~~i~---~ 386 (587)
++.+.-.+..+.++.-+. .+.+....+...+.....-..+.+.....++.. .++ ........+.+++. .
T Consensus 245 -----~~~~~~~~~~~~~~~d~~~~~vc~~~~~~~~~~~~~iet~~~~~~m~~y~w~~~~av~~~gi~~~~~g~ls~~~~ 319 (488)
T KOG2325|consen 245 -----EEEKSDIEKVKKPKLDWVAVLVCIFLRFVVNFIATTIETLSSALTMVMYGWTGSEAVLYNGITLSISGILSVILL 319 (488)
T ss_pred -----hhhccchhhhccCChhHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHhccccchHHHhhhhHHHHHHHHHHHHH
Confidence 000001111222222222 233333333333332332344445555555655 222 22222333333333 2
Q ss_pred HhHHHhh-cccCCchhhHhhhHHHHHHHHHHHHHH-Hhc--c--------------CCCCCCCcCccchhHHHHHH--HH
Q psy11547 387 IASCIMM-KKMGRRSLTFISSIGCGVSMTGLGLYI-FAT--K--------------DFWPEYKFPAFVSYLPVLML--MT 446 (587)
Q Consensus 387 ~~~g~l~-d~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~--~--------------~~~~~~~~~~~~~~~~~~~~--~~ 446 (587)
+...+.. .++.+|..+..+.+....+..+..... ..+ - ..|++... . .+...+... .+
T Consensus 320 l~~~f~~l~~i~~r~~~~~g~l~~f~~~~i~~yp~~~~s~pv~~~~~~~~~~~~~~y~wc~~~~-~-v~~~~~l~~~i~~ 397 (488)
T KOG2325|consen 320 LLYIFTRLGKIDKRRIILLGFLIFFLSYYIFTYPWGFYSGPVQPYNTTYAGCDFEEYSWCDTTT-A-VPLILYLISFIVV 397 (488)
T ss_pred HHHHHHHhhhhccceeeeehHHHHHHhhheeeeeccccccccccccccccCcCcccchhhccCc-c-cChhhheeehhhe
Confidence 2222222 233344444444333333322221110 000 0 01111100 0 111111111 11
Q ss_pred HHHHHhccccccceeeeeccCCCCchhhHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhHHHHHHHHHHHHHHHhhee
Q psy11547 447 FTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLTKEGTFLMYGCISLLGTIFFYVY 524 (587)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 524 (587)
++..+-....+. .+.-+|+..++.+++..|+......++..++|.+...+....|+++.+.+.++..++...+...+
T Consensus 398 ~g~~~P~~~~~~-~tlySkiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~~~g~~~v~~~~~~~~l~~~~l~~~~ 474 (488)
T KOG2325|consen 398 FGIAFPFISTAL-DTLYSKILGPRDQGTMQGVFSISGSIARVVGPIFSTAIFTLSGPRPVWIILLCLLLVVAALWIVF 474 (488)
T ss_pred eccccccccchH-HHHHHHHhCCccccceeEEEEeccchhhhhhHHHHhhhHHhcCccHHHHHHHHHHHHHHHHHHHH
Confidence 222221111122 36778899999999999999999999999999999999999998887776666555554443333
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.7e-16 Score=147.21 Aligned_cols=347 Identities=13% Similarity=0.064 Sum_probs=227.5
Q ss_pred cchhHHHHHHHHHHHHHHHHhHHHhhhccch-hHHHHHhhHHHHHHHHHHHhcCCCCCCcchhhHHhhhhhhcccccccc
Q psy11547 127 SDESTWIASLSAIGTMVGCVLGGYMMDLVGR-KMTLIITEVPTILGWALIALAPSLPSSILPWIFTGRILTGLGSGMVGA 205 (587)
Q Consensus 127 ~~~~g~i~s~~~l~~~i~~~~~g~l~dr~Gr-r~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~ 205 (587)
.+-.|...++..+..++.+++.|.++|+.|+ |+.+-+...+..++.++..++++- ..++..++.-.+..++......
T Consensus 57 ~a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~--s~~~~~l~~~il~~i~~~~s~V 134 (438)
T COG2270 57 TAYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPG--SYLLLLLLFLILASIGFEFSNV 134 (438)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCC--chHHHHHHHHHHHHHhcchhhe
Confidence 3556888899999999999999999999995 556666777777777888887762 1222566678888899899999
Q ss_pred ccceeeeeccCCCcchhHhHHHHHHHHHHHHHHHHhhhhh----------------------hHHHHHHHHHHHHHHHHH
Q psy11547 206 PSRIYTAECSQPHLRGMLSSLASFGVSLGVLFEYSLGAFL----------------------SWDTVAAISTIIPVLSII 263 (587)
Q Consensus 206 ~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l----------------------~wr~~f~~~~~~~~~~~~ 263 (587)
.-.+++.+..++++-++..++-.....+|.++.-+..... .=|..+.+.++.-++..+
T Consensus 135 fyds~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~i 214 (438)
T COG2270 135 FYDSMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFAL 214 (438)
T ss_pred ehhhHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHh
Confidence 9999999999998888887776666666666555443211 357777777777665544
Q ss_pred Hh-cccCCCchHHHhcCCH-HHHHHHHHHHhCCCcchHHHHhhHHHHHHHHHHHhhhhhhHhHHhhhcCCchHHHHHHHH
Q psy11547 264 AG-CLMPESPSWLLSQGRK-DACRNSLRRLRANNYDVEKEVQGLYEFSKRQETQKSRNFKETLAAIVEPACLKPFVILML 341 (587)
Q Consensus 264 ~~-~~~~esp~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (587)
-. +.+++.++- +... ....+.. ++-+.++++..+++ . +..++
T Consensus 215 Pm~~~v~~~~~~---~~~~~~~l~~g~----------------------------k~L~~t~k~i~~~~-~----i~~FL 258 (438)
T COG2270 215 PMILNVHDAEKI---SSPPPTALRNGF----------------------------KELKSTFKEIRGRK-N----LVLFL 258 (438)
T ss_pred HHHhcccccccc---cccchHHHHHHH----------------------------HHHHHHHHHHhccc-c----hHHHH
Confidence 43 346555420 0000 0000000 00111122222222 1 22222
Q ss_pred HHHHHHhccchhhHhcHHHHHH-hcCCC-cchHHHHHHHHHHHHHHHHhHHHhhcccCCchhhHhhhHHHHHHHHHHHHH
Q psy11547 342 YFLIYQFSGVNPVTFYAVNIFK-DAGAH-VNNNLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLY 419 (587)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~-~~g~~-~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~ 419 (587)
+..+...-+.+........+-. +.|++ .+.........+.+++|+++.|++.+|+|.|+++..+.++..+.++...+
T Consensus 259 iA~~~~~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~- 337 (438)
T COG2270 259 IARFFYIDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIF- 337 (438)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHH-
Confidence 3333333456666666666666 67887 55567788888999999999999999999999888888777666555444
Q ss_pred HHhccCCCCCCCcCccchhHHHHHHHHHHHHHhccccccceeeeeccCCCCchhhHHHHHHHHHHHHHHHHHHhhHHHHH
Q psy11547 420 IFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQT 499 (587)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~ 499 (587)
....... ..+.++.+.+..+.....-++..+.+|++.-++.+|+++..+...++++|.+.+.+.+
T Consensus 338 --------------~~~~~~f-~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~ 402 (438)
T COG2270 338 --------------LEGELDF-WILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQ 402 (438)
T ss_pred --------------ccccHHH-HHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHH
Confidence 1122222 2222333333344455666899999999999999999999999999999999999998
Q ss_pred hhhhhh-HHHHHHHHHHHHHHHhheecccC
Q psy11547 500 HLTKEG-TFLMYGCISLLGTIFFYVYLPET 528 (587)
Q Consensus 500 ~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~ 528 (587)
.+|... .+...+++..++. +.+...|..
T Consensus 403 iTg~~r~g~~~i~vll~iGl-~~L~~v~~~ 431 (438)
T COG2270 403 ITGSSRAGVLSIIVLLLIGL-LLLLRVKVP 431 (438)
T ss_pred HhcchhhHHHHHHHHHHhhH-hhEEeecCC
Confidence 877533 3443444444443 344555544
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.74 E-value=6.4e-17 Score=155.99 Aligned_cols=270 Identities=9% Similarity=0.013 Sum_probs=178.8
Q ss_pred hcCCCCCCcchhhHHhhhhhhccccccccccceeeeeccCCCcchhHhHHHHHHHHHHHHHHHHhhhhh-----------
Q psy11547 177 LAPSLPSSILPWIFTGRILTGLGSGMVGAPSRIYTAECSQPHLRGMLSSLASFGVSLGVLFEYSLGAFL----------- 245 (587)
Q Consensus 177 ~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l----------- 245 (587)
...+|+ .++++-++.|.|.+...+..+.++.+..+++++.+.+++.+..+++|.+++|.+++.+
T Consensus 6 ~~~~~~-----~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~ 80 (310)
T TIGR01272 6 SQRYYV-----LFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQ 80 (310)
T ss_pred HhhHHH-----HHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhh
Confidence 345566 9999999999999999999999999999999999999999999999999999999854
Q ss_pred ---------hHHHHHHHHHHHHHHHHHHhcc--cCCCchHHHhcCCHHHHHHHHHHHhCCCcchHHHHhhHHHHHHHHHH
Q psy11547 246 ---------SWDTVAAISTIIPVLSIIAGCL--MPESPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQGLYEFSKRQET 314 (587)
Q Consensus 246 ---------~wr~~f~~~~~~~~~~~~~~~~--~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (587)
.|+++|++.+.+.++..++..+ +||... + +.++. .+
T Consensus 81 ~~~~~~~~~~~~~~yl~ia~~~~~~~i~~~~~~~p~~~~----~-~~~~~---------------------------~~- 127 (310)
T TIGR01272 81 VATANAEAAKVHTPYLLLAGALAVLAIIFAFLPLPELQE----A-DVARV---------------------------SS- 127 (310)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCc----c-ccccc---------------------------cc-
Confidence 4889999776665555444433 555321 0 00000 00
Q ss_pred HhhhhhhHhHHhhhcCCchHHHHHHHHHHHHHHhccchhhHhcHHHHHHh---cCCC-cchHHHHHHHHHHHHHHHHhHH
Q psy11547 315 QKSRNFKETLAAIVEPACLKPFVILMLYFLIYQFSGVNPVTFYAVNIFKD---AGAH-VNNNLAAVIMGIVRLIFTIASC 390 (587)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~-~~~~~~~~~~~~~~~i~~~~~g 390 (587)
++.. ...+.++++. ..+ ..+..+.....-.....|.+.|+.+ .|++ .+.+.......++.++|+++++
T Consensus 128 ~~~~---~~~~~~~~~~----~~l-~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~ 199 (310)
T TIGR01272 128 GDTT---QKTSAFQFTH----LVL-GALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGS 199 (310)
T ss_pred cccc---chhhHHhhHH----HHH-HHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000 0011222222 222 2222222222344566677788764 3666 4556778888899999999999
Q ss_pred HhhcccCCchhhHhhhHHHHHHHHHHHHHHHhccCCCCCCCcCccchhHHHHHHHHHHHHHhccccccceeeeeccCCCC
Q psy11547 391 IMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTK 470 (587)
Q Consensus 391 ~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 470 (587)
++.||+++|+.+.++.++.+++.+++.. .. .........+++.+. ....|..++...+.+|++
T Consensus 200 ~l~~r~g~~~~l~~~~~l~~~~~~l~~~---------------~~-~~~~~~~~~l~g~~~-s~i~P~~~s~a~~~~~~~ 262 (310)
T TIGR01272 200 AVMPMISQGRYLAFNAFLAVLLSIGAAL---------------TH-GYVAMWFVLALGLFN-SIMFPTIFSLALNALGRH 262 (310)
T ss_pred HHHHHhCHHHHHHHHHHHHHHHHHHHHH---------------cC-CHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhhhh
Confidence 9999999988888777766665543332 11 122222333333333 334455557777777754
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhHHHHHH
Q psy11547 471 VRGIVGGLTTCACHFFIFLTVKSYNMFQTHLTKEGTFLMYG 511 (587)
Q Consensus 471 ~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~ 511 (587)
.+++.++. ..+.+|++++|.+.|.+.|..|.+.++++..
T Consensus 263 -~~~asai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~v~~ 301 (310)
T TIGR01272 263 -TSQGSGIL-CLAIVGGAIVPLLQGSLADCLGIQLAFALPV 301 (310)
T ss_pred -hhhhHHHH-HHHHhcchHHHHHHHHHHHhccchHHHHHHH
Confidence 36667774 6778999999999999999989877776443
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >KOG3626|consensus | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.8e-15 Score=154.49 Aligned_cols=308 Identities=17% Similarity=0.172 Sum_probs=212.9
Q ss_pred HHHHHHHHHHhhhhhhccccccHHHHHhhhcCCCCCccCcchhHHHHHHHHHHHHHHHHhHHHhhhccchhHHHHHhhHH
Q psy11547 88 SLTLAVFANLGNVNTGMVFGFSAAATSQLISRDSPYRITSDESTWIASLSAIGTMVGCVLGGYMMDLVGRKMTLIITEVP 167 (587)
Q Consensus 88 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~i~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~ 167 (587)
....+++.++..+.+++..+.+...+..+.+. |+++.++.|++.+.+-++..+...+..+.+-|.-|-+++-+|+++
T Consensus 95 ~k~fl~~l~~~~~~q~l~~~y~~s~IttiErR---F~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~ 171 (735)
T KOG3626|consen 95 IKMFLVLLSLAAFAQGLYVGYFNSVITTIERR---FKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVL 171 (735)
T ss_pred cchHHHHHHHHHHHHHhhhhhhhhhhhhhhhh---cCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhH
Confidence 34556666777888888888888888888886 999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcC------------------CC---------------------------CCC--cchhhHHhhhhhhccc
Q psy11547 168 TILGWALIALAP------------------SL---------------------------PSS--ILPWIFTGRILTGLGS 200 (587)
Q Consensus 168 ~~i~~~~~~~~~------------------~~---------------------------~~~--~~~~l~~~r~l~G~~~ 200 (587)
++++++++++-+ +. ... .+..++++.++.|+|.
T Consensus 172 m~lgsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~ 251 (735)
T KOG3626|consen 172 MGLGSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGA 251 (735)
T ss_pred HHHHHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCC
Confidence 999999998620 00 000 1336678999999999
Q ss_pred cccccccceeeeeccCCCcchhHhHHHHHHHHHHHHHHHHhhhhh-----------------------hHHHHHHHHHHH
Q psy11547 201 GMVGAPSRIYTAECSQPHLRGMLSSLASFGVSLGVLFEYSLGAFL-----------------------SWDTVAAISTII 257 (587)
Q Consensus 201 g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l-----------------------~wr~~f~~~~~~ 257 (587)
...++...+|+-|...+++-...+|+......+|.++|.++++++ .|..-|++.+.+
T Consensus 252 Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~ 331 (735)
T KOG3626|consen 252 TPIFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGAL 331 (735)
T ss_pred CCCccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999986 477788888888
Q ss_pred HHHHHHHhcccCCCchHHHhcCCHHHHHHHHHHHhCCCcchHHHHhhHHHHHHHHHHHhhhhhhHhHHhhhcCCchHHHH
Q psy11547 258 PVLSIIAGCLMPESPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQGLYEFSKRQETQKSRNFKETLAAIVEPACLKPFV 337 (587)
Q Consensus 258 ~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (587)
.++..+.++++|..... ..+. ...++.+....+.+.. .......+.-+.-.+..+++++++.+
T Consensus 332 ~~~~a~p~f~fPk~lp~---~~~~----~~~~~~~~~k~~~~~~-----~~~~~~~~~ikdfp~s~~~ll~N~if----- 394 (735)
T KOG3626|consen 332 LLFSAVPLFFFPKELPK---SQKR----KRARDLHVLKTESGGA-----KSDKTFGKKIKDFPKSIKRLLSNPIF----- 394 (735)
T ss_pred HHHHHHHHHhCcccCcc---cccc----chhhhhcccccccccc-----cCCcchhhhHHHHHHHHHHHhcCchH-----
Confidence 88888888877765321 0000 0000000000000000 00000000112223455666666643
Q ss_pred HHHHHHHHHHhccchhhHhcHHHHHHh-cCCC-cchHHHH-HHHHHHHHHHHHhHHHhhcccC--CchhhHhhhHHHHHH
Q psy11547 338 ILMLYFLIYQFSGVNPVTFYAVNIFKD-AGAH-VNNNLAA-VIMGIVRLIFTIASCIMMKKMG--RRSLTFISSIGCGVS 412 (587)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~-~~~~~~~-~~~~~~~~i~~~~~g~l~d~~g--~~~~~~~~~~~~~~~ 412 (587)
+...+........+..+..|+|.|++. +|.+ ..+..+. .+...+..+|.+++|++..|+. .|....+..+...+.
T Consensus 395 ~~~~l~~~~~~~~~~G~~tFlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~~~~~~~l~ 474 (735)
T KOG3626|consen 395 MLVVLASVIESLAITGYITFLPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAAKFVIVCSVLS 474 (735)
T ss_pred HHHHHHHHHHHHHHhhHHHhhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecccHHHHHHHHHHHHHHH
Confidence 333333334444567788889999886 5665 2333333 3333456778889999999886 344554444444444
Q ss_pred HHH
Q psy11547 413 MTG 415 (587)
Q Consensus 413 ~~~ 415 (587)
++.
T Consensus 475 l~~ 477 (735)
T KOG3626|consen 475 LLF 477 (735)
T ss_pred HHH
Confidence 444
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.1e-15 Score=154.92 Aligned_cols=176 Identities=16% Similarity=0.126 Sum_probs=133.8
Q ss_pred HHHHHhhhcCCCCCccCcchhHHHHHHHHHHHHHHHHhHHHhhhccchhHHHHHhhHHHHHHHHH---HHhcCCCCCCcc
Q psy11547 110 AAATSQLISRDSPYRITSDESTWIASLSAIGTMVGCVLGGYMMDLVGRKMTLIITEVPTILGWAL---IALAPSLPSSIL 186 (587)
Q Consensus 110 ~~~~~~~~~~~~~~~~s~~~~g~i~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~---~~~~~~~~~~~~ 186 (587)
...+|.+..+ .+|.+..+.+++.+...++..++.+++|+++||+|||+++.++.++..++.+. ...+++..
T Consensus 270 ~~~~p~~l~~--~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 343 (490)
T PRK10642 270 LTYMPSYLSH--NLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIG---- 343 (490)
T ss_pred HHHHHHHHHH--hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHH----
Confidence 3455665532 37888888888888999999999999999999999999988887654443332 22234455
Q ss_pred hhhHHhhhhhhccccccccccceeeeeccCCCcchhHhHHHHHHHHHHHHHHHHhhhhh-----hHHHHHHHHHHHHHHH
Q psy11547 187 PWIFTGRILTGLGSGMVGAPSRIYTAECSQPHLRGMLSSLASFGVSLGVLFEYSLGAFL-----SWDTVAAISTIIPVLS 261 (587)
Q Consensus 187 ~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l-----~wr~~f~~~~~~~~~~ 261 (587)
.++++|++.|++.+........++.|++|++.|+.++++......++..++|.+.+++ +|+.++++..+++++.
T Consensus 344 -~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~ 422 (490)
T PRK10642 344 -LIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIG 422 (490)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHH
Confidence 6778899999877766677777888999999999999974444445556777777665 5787777777777777
Q ss_pred HHHhcccCCCchHHHhc-----CCHHHHHHHHHHHh
Q psy11547 262 IIAGCLMPESPSWLLSQ-----GRKDACRNSLRRLR 292 (587)
Q Consensus 262 ~~~~~~~~esp~~~~~~-----~~~~~~~~~~~~~~ 292 (587)
++..+++||+|+|+.++ ++.+|+.+.+++++
T Consensus 423 ~~~~~~~pes~~~~~~~~~~~~~~~~~a~~~l~~~~ 458 (490)
T PRK10642 423 LITGVTMKETANRPLKGATPAASDIQEAKEILVEHY 458 (490)
T ss_pred HHHHHHhccccCCCCCCccccccchhhHHHHhhccc
Confidence 77777789999998765 88899999888886
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=99.61 E-value=6.9e-17 Score=165.50 Aligned_cols=393 Identities=17% Similarity=0.162 Sum_probs=3.0
Q ss_pred HHHHHhhhhhhccccccHHHHHhhhcCCCCCccCcchhHHHHHHHHHHHHHHHHhHHHhhhccchhHHHHHhhHHHHHHH
Q psy11547 93 VFANLGNVNTGMVFGFSAAATSQLISRDSPYRITSDESTWIASLSAIGTMVGCVLGGYMMDLVGRKMTLIITEVPTILGW 172 (587)
Q Consensus 93 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~i~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~ 172 (587)
++.++..+.+....+.....+..+.+. |+++.++.|++.+.+-++..+..++..++.+|..|-|++-+|.+++++++
T Consensus 6 ~~~~~~~~~q~~~~g~~~~~lttiErR---F~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~ 82 (539)
T PF03137_consen 6 VFLCLLGLFQMMVSGYVNSSLTTIERR---FGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGS 82 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHH
Confidence 334444555577788888888898886 99999999999999999999999999999999888899999999999999
Q ss_pred HHHHhc----CCC------------------C-----------------------CCcchhhHHhhhhhhcccccccccc
Q psy11547 173 ALIALA----PSL------------------P-----------------------SSILPWIFTGRILTGLGSGMVGAPS 207 (587)
Q Consensus 173 ~~~~~~----~~~------------------~-----------------------~~~~~~l~~~r~l~G~~~g~~~~~~ 207 (587)
+++++= +.+ - ...++.++++.++.|+|....++..
T Consensus 83 ~l~~lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG 162 (539)
T PF03137_consen 83 LLFALPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLG 162 (539)
T ss_dssp ---------------------------------------------------------------------SSS--------
T ss_pred HHHhccHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccce
Confidence 998851 000 0 0124578889999999999999999
Q ss_pred ceeeeeccCCCcchhHhHHHHHHHHHHHHHHHHhhhhh--------------------------hHHHHHHHHHHHHHHH
Q psy11547 208 RIYTAECSQPHLRGMLSSLASFGVSLGVLFEYSLGAFL--------------------------SWDTVAAISTIIPVLS 261 (587)
Q Consensus 208 ~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l--------------------------~wr~~f~~~~~~~~~~ 261 (587)
.+|+-|.+++++-+..+|+......+|.++|.++++.+ .|..-|++.+++.++.
T Consensus 163 ~tYiDDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~ 242 (539)
T PF03137_consen 163 ITYIDDNVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLS 242 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eeeeccccccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999865 2555666666666666
Q ss_pred HHHhcccCCCchHHHhcCCHHHHHHHHHHHhCCCcchHHHHhhHHHHHHHHHHHhhhhhhHhHHhhhcCCchHHHHHHHH
Q psy11547 262 IIAGCLMPESPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQGLYEFSKRQETQKSRNFKETLAAIVEPACLKPFVILML 341 (587)
Q Consensus 262 ~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (587)
.+..+++|+.-+... +..++.+...++....+.+...+.+. .+.....-+.-.+..+++++++. ++...
T Consensus 243 aipl~~FPk~lp~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~df~~~l~~Ll~Np~-----f~~~~ 311 (539)
T PF03137_consen 243 AIPLFFFPKKLPGTS--ERQEEKESSERKEEDSDKDSFKDPKS----KKSFGKSIKDFPKALKRLLTNPV-----FMCLI 311 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHcCCccCCCcc--cccchhhhhhcchhhhhhhccccccc----ccchhhhhhhHHHHHHHHhcChH-----HHHHH
Confidence 666655665421110 00000000000000000000000000 00000001112233444555544 33334
Q ss_pred HHHHHHhccchhhHhcHHHHHHh-cCCC-cchHH-HHHHHHHHHHHHHHhHHHhhcccC--CchhhHhhhHHHHHHHHHH
Q psy11547 342 YFLIYQFSGVNPVTFYAVNIFKD-AGAH-VNNNL-AAVIMGIVRLIFTIASCIMMKKMG--RRSLTFISSIGCGVSMTGL 416 (587)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~-~g~~-~~~~~-~~~~~~~~~~i~~~~~g~l~d~~g--~~~~~~~~~~~~~~~~~~~ 416 (587)
+...........+..+.|.|++. ++.+ ..+.. ...+...+..+|.+++|++.+|++ .|..+....+...++.+.+
T Consensus 312 la~~~~~~~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~~v~~~~~ 391 (539)
T PF03137_consen 312 LAGVFESFIVSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVSIVSVILY 391 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHHHHHHHHH
Confidence 44444444566677888888885 5554 23332 233333467788999999999985 3455444444444433331
Q ss_pred HHHHHh--c-------cCCC-------C--------------------CCCcCcc--chhHHH-HHHHHHHHHHhccccc
Q psy11547 417 GLYIFA--T-------KDFW-------P--------------------EYKFPAF--VSYLPV-LMLMTFTAASTIGYLV 457 (587)
Q Consensus 417 ~~~~~~--~-------~~~~-------~--------------------~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~ 457 (587)
...... + ...+ . ....+.. .....+ +.+++..........|
T Consensus 392 ~~~~~~~C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~~~~~~~~~p 471 (539)
T PF03137_consen 392 SPLFFLGCPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFILSFFTFMSQVP 471 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHeecCCCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHHHHHHHhcccc
Confidence 111000 0 0000 0 0001111 112222 2222222333333344
Q ss_pred cceeeeeccCCCCchhhHHHHHHHHHH-HHHHHHHHhhHHHHHh
Q psy11547 458 VPWVMIGEVYPTKVRGIVGGLTTCACH-FFIFLTVKSYNMFQTH 500 (587)
Q Consensus 458 ~~~~~~~~~~p~~~r~~~~g~~~~~~~-~g~~i~~~~~g~l~~~ 500 (587)
.. ..+-..+|++.|+.+.|+...+.. +|..-+|.++|.++|.
T Consensus 472 ~~-~i~LR~V~~~~rs~AlGv~~~~~rllg~IPgPIifG~iiD~ 514 (539)
T PF03137_consen 472 ST-LITLRCVPPEQRSFALGVQWLIIRLLGFIPGPIIFGAIIDS 514 (539)
T ss_dssp --------------------------------------------
T ss_pred hh-eeeeccCChhhcchhhhHHHHHHHhhcCcchHHHHhHHHhh
Confidence 43 666688999999999999987765 5778899999999986
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=99.57 E-value=2e-12 Score=123.36 Aligned_cols=326 Identities=11% Similarity=-0.008 Sum_probs=203.3
Q ss_pred CccCcchhHHHHHHHHHHHHHHHHhHHHhhhccc-----hhH-HHHHhhHHHHHHHHHHHhc-----C-------CCCCC
Q psy11547 123 YRITSDESTWIASLSAIGTMVGCVLGGYMMDLVG-----RKM-TLIITEVPTILGWALIALA-----P-------SLPSS 184 (587)
Q Consensus 123 ~~~s~~~~g~i~s~~~l~~~i~~~~~g~l~dr~G-----rr~-~l~~~~~~~~i~~~~~~~~-----~-------~~~~~ 184 (587)
+++...-.+.+.++..+... ..+.+|+.+|+.+ ||. .+..|.++...+..+..++ . +.+ .
T Consensus 10 L~vpA~lv~~lval~~~~ap-~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~~~-~ 87 (403)
T PF03209_consen 10 LGVPAWLVALLVALHYLVAP-LRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGPFW-L 87 (403)
T ss_pred hccHHHHHHHHHHHHHHHHH-HHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccccH-H
Confidence 88888888888888887766 5899999999998 774 4555666666665555543 2 111 0
Q ss_pred cchhhHHhhhhhhccccccccccceeeeeccCCCcchhHhHHHHHHHHHHHHHHHHhhhhh-----hHHH--HHHHHHHH
Q psy11547 185 ILPWIFTGRILTGLGSGMVGAPSRIYTAECSQPHLRGMLSSLASFGVSLGVLFEYSLGAFL-----SWDT--VAAISTII 257 (587)
Q Consensus 185 ~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l-----~wr~--~f~~~~~~ 257 (587)
......+.-.+.|+|.+...+...+++.|..|+++|+++.++.....-+|.+++..+.+.+ .-|. ++...+++
T Consensus 88 g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~v~~~~a~i 167 (403)
T PF03209_consen 88 GLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQVIQGVALI 167 (403)
T ss_pred HHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHH
Confidence 1123445677889999999999999999999999999999999999999999999988877 2222 22222222
Q ss_pred HHHHHHHhcccCCCchHHHhcCCHHHHHHHHHHHhCCCcchHHHHhhHHHHHHHHHHHhhhhhhHhHHhhhcCCchHHHH
Q psy11547 258 PVLSIIAGCLMPESPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQGLYEFSKRQETQKSRNFKETLAAIVEPACLKPFV 337 (587)
Q Consensus 258 ~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (587)
.++..++..+-.|.+.....+. .++++..-...+.+...++..++ ++
T Consensus 168 ~~~l~~ia~wg~E~r~~~~~~~--------------------------------~~~~~~~f~~a~~~~~~~~~a~~-f~ 214 (403)
T PF03209_consen 168 ALLLNLIALWGQEPRRSRRAAA--------------------------------AERPRPPFREAWRQVWASPQARR-FF 214 (403)
T ss_pred HHHHHHHHHHhcccCCcccccC--------------------------------CCCCCccHHHHHHHHHhCCChhH-HH
Confidence 2222222222223211000000 00001111223334444444433 32
Q ss_pred HHHHHHHHHHhccchhhHhc-HHHHHHhcCCC-cchHHHHHHHHHHHHHHHHhHHHhhc-ccCCchhhHhhhHHHHHHHH
Q psy11547 338 ILMLYFLIYQFSGVNPVTFY-AVNIFKDAGAH-VNNNLAAVIMGIVRLIFTIASCIMMK-KMGRRSLTFISSIGCGVSMT 414 (587)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~-~~~~~~~~~~~~~~~i~~~~~g~l~d-~~g~~~~~~~~~~~~~~~~~ 414 (587)
...++..+. ++..-.. -|+=-+.+|++ .++.......+.+.+++....+++.. |.++++...+++....+++.
T Consensus 215 ~fl~l~t~a----~~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~ 290 (403)
T PF03209_consen 215 VFLFLGTLA----FFMQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFA 290 (403)
T ss_pred HHHHHHHHH----HHhhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHH
Confidence 222222211 1111111 12222346777 55667777788888888888888765 67778887788888877777
Q ss_pred HHHHHHHhccCCCCCCCcCccchhHHHHHHHHHHHHHhccccccceeeeeccCCCCchhhHHHHHHHHHHHHHHHHHHhh
Q psy11547 415 GLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSY 494 (587)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~~~~~ 494 (587)
++...... ...+......++++.+.+...... .+...+...++..|..+|.....+.+...++..+.
T Consensus 291 lii~a~~~------------~~~~~~~~~~~l~G~g~G~f~vga-ls~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~G 357 (403)
T PF03209_consen 291 LIILAGPL------------GSPWLFRPGVFLLGLGNGLFTVGA-LSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLG 357 (403)
T ss_pred HHHHHHhc------------ccchHHHHHHHHHHHhhhHHHHHH-HHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 76654433 234444444444444444333222 25667778888889999999999999999999999
Q ss_pred HHHHHh
Q psy11547 495 NMFQTH 500 (587)
Q Consensus 495 g~l~~~ 500 (587)
|.+.|.
T Consensus 358 G~~~D~ 363 (403)
T PF03209_consen 358 GALRDL 363 (403)
T ss_pred HHHHHH
Confidence 888764
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.9e-14 Score=121.00 Aligned_cols=133 Identities=26% Similarity=0.439 Sum_probs=119.1
Q ss_pred HHHHHHHHHHHHHHhHHHhhhccchhHHHHHhhHHHHHHHHHHHhcCCCCCCcchhhHHhhhhhhccccccccccceeee
Q psy11547 133 IASLSAIGTMVGCVLGGYMMDLVGRKMTLIITEVPTILGWALIALAPSLPSSILPWIFTGRILTGLGSGMVGAPSRIYTA 212 (587)
Q Consensus 133 i~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~ 212 (587)
+.+.+.++..++.++.|++.||+|||+.+..+..+..++.++..+.++++ .+.+.+++.|++.+...+....++.
T Consensus 3 ~~~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~g~~~~~~~~~~~~~~~ 77 (141)
T TIGR00880 3 LLAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNIT-----VLIIARFLQGFGAAFALVAGAALIA 77 (141)
T ss_pred EEEeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHH-----HHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 34567788999999999999999999999999999999999998888888 8999999999999999999999999
Q ss_pred eccCCCcchhHhHHHHHHHHHHHHHHHHhhhhh----hHHHHHHHHHHHHHHHHHHhcc-cCC
Q psy11547 213 ECSQPHLRGMLSSLASFGVSLGVLFEYSLGAFL----SWDTVAAISTIIPVLSIIAGCL-MPE 270 (587)
Q Consensus 213 e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l----~wr~~f~~~~~~~~~~~~~~~~-~~e 270 (587)
|.+|+++|++..++......+|..+++.+++.+ +|++.|++.+++.++..+..++ .||
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (141)
T TIGR00880 78 DIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPE 140 (141)
T ss_pred HHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 999999999999999999999999999999887 8999999988887776666554 554
|
|
| >KOG2816|consensus | Back alignment and domain information |
|---|
Probab=99.49 E-value=6.9e-12 Score=125.46 Aligned_cols=310 Identities=17% Similarity=0.169 Sum_probs=198.6
Q ss_pred HHHHHHHHHHHhHHHhhhccchhHHHHHhhHHHHHHHHHHHhcCCCCCCcchhhHHhhhhhhcc--ccccccccceeeee
Q psy11547 136 LSAIGTMVGCVLGGYMMDLVGRKMTLIITEVPTILGWALIALAPSLPSSILPWIFTGRILTGLG--SGMVGAPSRIYTAE 213 (587)
Q Consensus 136 ~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~r~l~G~~--~g~~~~~~~~~i~e 213 (587)
...+...+.++..|.++||+|||..+....+...+..+...+.. +| +++ +.|+. .+..+....++++|
T Consensus 70 ~~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~-~~------~~~---~~~l~g~~~~~~s~~~a~vad 139 (463)
T KOG2816|consen 70 TAGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQG-YW------FFL---LLGLSGGFSAIFSVGFAYVAD 139 (463)
T ss_pred hhHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHH-HH------Hhh---hcccccchhhhhhhhhhheee
Confidence 34688889999999999999999999999999888888877766 33 443 44432 34566788899999
Q ss_pred ccCCCcchhHhHHHHHHHHHHHHHHHHhhhhh----hHHHHHHHHHHHHHHHHHHhcc-cCCCchHHHhcCCHHHHHHHH
Q psy11547 214 CSQPHLRGMLSSLASFGVSLGVLFEYSLGAFL----SWDTVAAISTIIPVLSIIAGCL-MPESPSWLLSQGRKDACRNSL 288 (587)
Q Consensus 214 ~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l----~wr~~f~~~~~~~~~~~~~~~~-~~esp~~~~~~~~~~~~~~~~ 288 (587)
....++|....++....+..+..++|.+++.+ +.-.+|.+..+..++..+...+ +||+-....+. + ...
T Consensus 140 is~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~---~---~~~ 213 (463)
T KOG2816|consen 140 ISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEKERS---D---ATL 213 (463)
T ss_pred ccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCccccc---c---ccc
Confidence 99999999999999999999999999999988 7777888888887777666555 88874211110 0 000
Q ss_pred HHHhCCCcchHHHHhhHHHHHHHHHHHhhhhhhHhHHhhhcCCchHHHHHHHHHHHH---HHhccchhhHhcHHHHHH-h
Q psy11547 289 RRLRANNYDVEKEVQGLYEFSKRQETQKSRNFKETLAAIVEPACLKPFVILMLYFLI---YQFSGVNPVTFYAVNIFK-D 364 (587)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-~ 364 (587)
+....... ......+..+........+..+.......+ ....+... ..+++++ .
T Consensus 214 ~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~r~~l~l~l~~~~~~~~~~~~~~~---~~~~yl~~~ 271 (463)
T KOG2816|consen 214 RELTPGSL-------------------DSSHVADAFQSLTKVGPDRLLLLLLLVAFLSSLPEAGGASD---VLLLYLKAK 271 (463)
T ss_pred cccCCCcc-------------------cchhhhhhhhhhcccCCCccchHHHHHHHHHHHHHhcCcee---EEEEEEeee
Confidence 00000000 000011111111111111111121111111 11111110 1111222 3
Q ss_pred cCCC-cchHHHHHHHHHHHHHHHHhHH-HhhcccCCchhhHhhhHHHHHHHHHHHHHHHhccCCCCCCCcCccchhHHHH
Q psy11547 365 AGAH-VNNNLAAVIMGIVRLIFTIASC-IMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVL 442 (587)
Q Consensus 365 ~g~~-~~~~~~~~~~~~~~~i~~~~~g-~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (587)
.+++ ...+......++...++.++.. .+...++-|+....|.....+....+++ ....|..+.
T Consensus 272 f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af---------------~~~~w~~~~ 336 (463)
T KOG2816|consen 272 FGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAF---------------ATETWMMFA 336 (463)
T ss_pred cCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHH---------------hccchhhhH
Confidence 5666 3445566777777888877666 6778888888888888888888888777 233343332
Q ss_pred HHHHHHHHHhccccccceeeeeccCCCCchhhHHHHHHHHHHHHHHHHHHhhHHHHHh
Q psy11547 443 MLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTH 500 (587)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~ 500 (587)
.... ..+.....|...++++....++.+|.++++...+..+...++|.+.+.++..
T Consensus 337 ~~v~--~~~~~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~~~ 392 (463)
T KOG2816|consen 337 AGVV--VALAGIVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIFAL 392 (463)
T ss_pred HHHH--HHhhcchhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHHHH
Confidence 2222 2223333455558888889999999999999999999999999999888644
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.3e-12 Score=130.07 Aligned_cols=354 Identities=16% Similarity=0.170 Sum_probs=210.9
Q ss_pred HHHHhhhcCCCCCccCcchhHHHHHHHHHHHHHHHHhHHHhhhcc---c--hhHHHHHhhHHHHHHHHHHHhcCCCCCCc
Q psy11547 111 AATSQLISRDSPYRITSDESTWIASLSAIGTMVGCVLGGYMMDLV---G--RKMTLIITEVPTILGWALIALAPSLPSSI 185 (587)
Q Consensus 111 ~~~~~~~~~~~~~~~s~~~~g~i~s~~~l~~~i~~~~~g~l~dr~---G--rr~~l~~~~~~~~i~~~~~~~~~~~~~~~ 185 (587)
...|.+.+ ++|+++++...+.+...+...+- ++.|.++|.+ | ||+-++++.++..++.+..+..+... ..
T Consensus 11 ~~~~~l~~---~l~ls~~~~~~~~~~~~lPw~~K-p~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~-~s 85 (433)
T PF03092_consen 11 AIYPFLKD---DLGLSPAQLQRLSSLASLPWSIK-PLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASE-SS 85 (433)
T ss_pred HHHHHHHH---HcCCCHHHHHHHHHHHhCchHHh-hhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhccccc-ch
Confidence 44556666 49999999999999999988874 7999999986 3 56667778877777777666655421 11
Q ss_pred chhhHHhhhhhhccccccccccceeeeeccC--CCcchhHhHHHHHHHHHHHHHHHHhhhhh----hHHHHHHHHHHHHH
Q psy11547 186 LPWIFTGRILTGLGSGMVGAPSRIYTAECSQ--PHLRGMLSSLASFGVSLGVLFEYSLGAFL----SWDTVAAISTIIPV 259 (587)
Q Consensus 186 ~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~--~~~r~~~~~~~~~~~~~G~~i~~~l~~~l----~wr~~f~~~~~~~~ 259 (587)
.....+.-++..+|......++-+++.|... ++.||...+.......+|.+++..+++.+ ++|..|.+.+++.+
T Consensus 86 ~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~ 165 (433)
T PF03092_consen 86 AAIAVVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPL 165 (433)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHH
Confidence 1156667788888999999999999999874 33477888888888999999999988887 88899988888877
Q ss_pred HHHHHhcc-cCCCchHHHhcCCHHHHHHHHHHHhCCCcchHHHHhhHHHHHHHHHHHhhhhhhHhHHhhhcCCchHHHHH
Q psy11547 260 LSIIAGCL-MPESPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQGLYEFSKRQETQKSRNFKETLAAIVEPACLKPFVI 338 (587)
Q Consensus 260 ~~~~~~~~-~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (587)
+..+..++ .+|.+.. +.++... ..+. . .......-++.....++.++.+..++..+.
T Consensus 166 l~~~~~~~~~~e~~~~-----~~~~~~~----~~~~------~-------~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~ 223 (433)
T PF03092_consen 166 LMLIVALFLLEERKVR-----PADEVFS----FGKE------E-------VPCLFGSFREQLSELWRALQQRAIWQPILF 223 (433)
T ss_pred HHHHHHHHhhhhcccc-----ccchhhc----cccc------c-------cchhhHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 77665555 4441100 0000000 0000 0 000000012233455666666666665552
Q ss_pred -HHHHHHHHHhccchh-hHhcHHHHHHhcCCCcch---HHHHHHHHHHHHHHHHhHHHhhcccCCchhhHhhhHHHHHHH
Q psy11547 339 -LMLYFLIYQFSGVNP-VTFYAVNIFKDAGAHVNN---NLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSM 413 (587)
Q Consensus 339 -~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~---~~~~~~~~~~~~i~~~~~g~l~d~~g~~~~~~~~~~~~~~~~ 413 (587)
.++.... ... ... ..++...... |.+.+. +....+..++.+++..+..+...+..-|+++.+..++.++..
T Consensus 224 ~~~~~~~~-~~~-~~a~~fy~~~~~~~--gp~fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~ 299 (433)
T PF03092_consen 224 FIFFFNLP-PSI-SSASSFYFQTDALG--GPHFSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLAS 299 (433)
T ss_pred HHHHHHhc-cCC-CCccEEEEEecccc--ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence 2211111 111 111 2222221111 222222 233344455555565555555555555666655554444333
Q ss_pred HHHHHHHHhccCCCCC-CCcCccchhHHHHHHHHHHHHHhccccccceeeeeccCCCCchhhHHHHHHHHHHHHHHHHHH
Q psy11547 414 TGLGLYIFATKDFWPE-YKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVK 492 (587)
Q Consensus 414 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~~~ 492 (587)
+.-..+. ..|+. .+.++. +..+.-..+........+.|.. .+++|+.|+..-|+.+++..++.++|..++..
T Consensus 300 l~~~~lv----~~~n~~~Gi~d~--~f~lgd~~l~~~~~~i~~mP~l-vl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~ 372 (433)
T PF03092_consen 300 LFDLLLV----TRWNLDLGIPDQ--WFALGDTILEEVIGMIAFMPSL-VLAARLCPKGSEGTVYALLASFSNLGSSVSST 372 (433)
T ss_pred cccEEEE----EEEeeeeCcCCe--EEEEEhHHHHHHHHHHHHHHHH-HHHHHHCCCCchHHHHHHHHHHHHHHHHHHHH
Confidence 2211110 01110 001111 2233333444445555555664 78899999999999999999999999999999
Q ss_pred hhHHHHHhhh
Q psy11547 493 SYNMFQTHLT 502 (587)
Q Consensus 493 ~~g~l~~~~g 502 (587)
+...+.+..+
T Consensus 373 lg~~l~~~~~ 382 (433)
T PF03092_consen 373 LGAFLMELFG 382 (433)
T ss_pred HHHHHHHHcC
Confidence 9988887766
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.3e-13 Score=141.98 Aligned_cols=138 Identities=12% Similarity=0.069 Sum_probs=122.4
Q ss_pred hHHHHHHHHHHHHHHHHhHHHhhhccchhHHHHHhhHHHHHHHHHHHhcCCCCCCcchhhHHhhhhhhccccccccccce
Q psy11547 130 STWIASLSAIGTMVGCVLGGYMMDLVGRKMTLIITEVPTILGWALIALAPSLPSSILPWIFTGRILTGLGSGMVGAPSRI 209 (587)
Q Consensus 130 ~g~i~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~ 209 (587)
..+...+..++..++.+++|+++||+|||++++++.++.++++++.+++++.. .+++++++.|++.++.++...+
T Consensus 597 ~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~-----~ll~~~~l~g~~~~~~~~~~~a 671 (742)
T TIGR01299 597 IYFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSES-----AMIALLCLFGGLSIAAWNALDV 671 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHH-----HHHHHHHHHHHHHHHHHHHHHH
Confidence 35556777899999999999999999999999999999999999999998877 7888899999988888999999
Q ss_pred eeeeccCCCcchhHhHHHHHHHHHHHHHHHHhhhhh---hHHHHHHHHHHHHHHHHHHhcccCCCc
Q psy11547 210 YTAECSQPHLRGMLSSLASFGVSLGVLFEYSLGAFL---SWDTVAAISTIIPVLSIIAGCLMPESP 272 (587)
Q Consensus 210 ~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l---~wr~~f~~~~~~~~~~~~~~~~~~esp 272 (587)
+++|++|.++|++++|+..+...+|.+++|.+++.+ +...+|++.+++.++..++.+++||+.
T Consensus 672 ~~aEl~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~~~~~pf~i~a~~lll~~ll~~~LPET~ 737 (742)
T TIGR01299 672 LTVELYPSDKRATAFGFLNALCKAAAVLGILIFGSFVGITKAAPILFASAALACGGLLALKLPDTR 737 (742)
T ss_pred HHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 999999999999999999999999999999999876 556778888887777777777789874
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.7e-12 Score=131.47 Aligned_cols=163 Identities=17% Similarity=0.105 Sum_probs=122.8
Q ss_pred chhhHhcHHHHHHhcCCC-cchHHHHHHHHHHHHHHHHhHHHhhcccCCchhhHhhhHHHHHHHHHHHHHHHhccCCCCC
Q psy11547 351 VNPVTFYAVNIFKDAGAH-VNNNLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPE 429 (587)
Q Consensus 351 ~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (587)
......+.|.+.++.|.+ .+.+.......++.+++.++.|++.||+|||+.+..+.++.+++.+++..
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~----------- 101 (398)
T TIGR00895 33 LAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCAL----------- 101 (398)
T ss_pred HHHHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHH-----------
Confidence 445666778888888887 45567777888889999999999999999999999888877777666554
Q ss_pred CCcCccchhHHHHHHHHHHHHHhccccccceeeeeccCCCCchhhHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhHHHH
Q psy11547 430 YKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLTKEGTFLM 509 (587)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~ 509 (587)
..+.+...+...+.+.+. ....+...+++.|.+|++.|+++.++......+|..+++.+.+.+.+..||+..+++
T Consensus 102 ----~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~ 176 (398)
T TIGR00895 102 ----ATNVTQLLILRFLAGLGL-GGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYV 176 (398)
T ss_pred ----ccchHHHHHHHHHHhccc-ccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhh
Confidence 122233333333333333 333455568899999999999999999999999999999999999999999988888
Q ss_pred HHHHHHHHHHHhheecccCC
Q psy11547 510 YGCISLLGTIFFYVYLPETK 529 (587)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~ 529 (587)
.+++.++..++.+.+.++..
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~ 196 (398)
T TIGR00895 177 GGIAPLLLLLLLMRFLPESI 196 (398)
T ss_pred hhhHHHHHHHHHHHhCCCCC
Confidence 76666666655555666543
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.2e-11 Score=125.17 Aligned_cols=179 Identities=19% Similarity=0.205 Sum_probs=131.8
Q ss_pred HHHHHHHHHHHHhccchhhHhcHHHHHHhcCCC-cchHHHHHHHHHHHHHHHHhHHHhhcccCCchhhHhhhHHHHHHHH
Q psy11547 336 FVILMLYFLIYQFSGVNPVTFYAVNIFKDAGAH-VNNNLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMT 414 (587)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~ 414 (587)
.+....+.++..........+..|.+.++.+.+ .+.+...+...++..++.+..|++.||+|||+++..+.++..++.+
T Consensus 9 ~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~ 88 (412)
T TIGR02332 9 LIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIAST 88 (412)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHHHH
Confidence 333334444444444555666677777888888 5667888888899999999999999999999999988888888877
Q ss_pred HHHHHHHhccCCCCCCCcCccchhHHHHHHHHHHHHHhccccccceeeeeccCCCCchhhHHHHHHHHHHHHHHHHHHhh
Q psy11547 415 GLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSY 494 (587)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~~~~~ 494 (587)
+..+ ..+.+...+.-.+.+.+. ....+....++.|.+|++.|+++.|+.+....+|..+++.+.
T Consensus 89 ~~~~---------------~~~~~~l~~~r~l~G~~~-~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~ 152 (412)
T TIGR02332 89 ATMF---------------ATGPESLYLLRILVGIAE-AGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILS 152 (412)
T ss_pred HHHH---------------hcCHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7665 122333333333333333 333455557789999999999999999999999999999999
Q ss_pred HHHHH------hhhhhhHHHHHHHHHHHHHHHhheecccCCC
Q psy11547 495 NMFQT------HLTKEGTFLMYGCISLLGTIFFYVYLPETKN 530 (587)
Q Consensus 495 g~l~~------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 530 (587)
+.+.+ ..||++.|++.++..++..++.+++++|+++
T Consensus 153 ~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~ 194 (412)
T TIGR02332 153 GYILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPD 194 (412)
T ss_pred HHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCcc
Confidence 98874 3689999999888877766666667777653
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.3e-11 Score=114.28 Aligned_cols=270 Identities=12% Similarity=0.055 Sum_probs=165.9
Q ss_pred HHHHHHHHHHhhhhhhccccccHHHHHhhhcCCCCCccCcchhHHHHHHHHHHHHHHHHhHHHhhhccchhHHHHHhhHH
Q psy11547 88 SLTLAVFANLGNVNTGMVFGFSAAATSQLISRDSPYRITSDESTWIASLSAIGTMVGCVLGGYMMDLVGRKMTLIITEVP 167 (587)
Q Consensus 88 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~i~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~ 167 (587)
+...+.+-.++...+.+.. |.+=.+.++ +|.++.|++.+....+....+...+.|.++||+|||+.-++.+++
T Consensus 36 qr~yl~vY~La~~aDWLQG----pY~Y~LY~~---yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cil 108 (354)
T PF05631_consen 36 QRKYLLVYLLAMAADWLQG----PYLYALYES---YGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCIL 108 (354)
T ss_pred HHHHHHHHHHHHHHHHhhc----chhHHHHHH---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHH
Confidence 3334444444555555543 333333343 899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCcchhhHHhhhhhhccccccccccceee-eecc----CCCcchhHhHHHH-HHHHHHHHHHHHh
Q psy11547 168 TILGWALIALAPSLPSSILPWIFTGRILTGLGSGMVGAPSRIYT-AECS----QPHLRGMLSSLAS-FGVSLGVLFEYSL 241 (587)
Q Consensus 168 ~~i~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i-~e~~----~~~~r~~~~~~~~-~~~~~G~~i~~~l 241 (587)
.+++++. -..++++ .++++|++.|++....+.+-.+++ .|.- |++..+..++... ...++-.+++.++
T Consensus 109 y~~scl~-k~~~~~~-----~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~ 182 (354)
T PF05631_consen 109 YSLSCLT-KHSSNYP-----VLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVV 182 (354)
T ss_pred HHHHHHH-HhccccH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHH
Confidence 9999864 4468888 999999999999999988877765 3432 2222233333222 2223333444445
Q ss_pred hhhh------hHHHHHHHHHHHHHHHHHHhcc-cCCCchHHHhcCCHHHHHHHHHHHhCCCcchHHHHhhHHHHHHHHHH
Q psy11547 242 GAFL------SWDTVAAISTIIPVLSIIAGCL-MPESPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQGLYEFSKRQET 314 (587)
Q Consensus 242 ~~~l------~wr~~f~~~~~~~~~~~~~~~~-~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (587)
+.++ +-..+|....++.++..+++.. -+|.+.. ..+..+.
T Consensus 183 a~~l~~~~~~g~vaPF~~a~~~l~~~~~~I~~~W~ENyg~---~~~~~~~------------------------------ 229 (354)
T PF05631_consen 183 ANVLADWFGFGPVAPFDAAIVLLAVAAVLILKTWPENYGD---TSSSSSL------------------------------ 229 (354)
T ss_pred HHHHHHHhCCCCcchHHHHHHHHHHHHHHHHhcccccCCC---cccccch------------------------------
Confidence 5444 3367888877777776666544 4553210 0000000
Q ss_pred HhhhhhhHhHHhhhcCCchHHHHHHHHHHHHHHhccchhhHhcHHHHHHhcCCCcchHHHHHHHHHHHHHHHHhHHHhhc
Q psy11547 315 QKSRNFKETLAAIVEPACLKPFVILMLYFLIYQFSGVNPVTFYAVNIFKDAGAHVNNNLAAVIMGIVRLIFTIASCIMMK 394 (587)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~g~l~d 394 (587)
.+.-.+.......++ +.+.+.....++....+..+..|.|.+- ..+-...-+.+...+.+..++|+.+..++..
T Consensus 230 -~~~~~~a~~~i~~d~----ril~LG~~qslFE~smy~FVflWtPaL~-~~~~~~P~GlIFssFM~a~MlGS~lf~~l~s 303 (354)
T PF05631_consen 230 -SGSFREAWRAILSDP----RILLLGLIQSLFEGSMYLFVFLWTPALD-PDDEELPLGLIFSSFMVAMMLGSSLFSRLLS 303 (354)
T ss_pred -HHHHHHHHHHHHcCc----hhHHHHHHHHHHHHHHHHheeeeeceec-CCCCCCCchHHHHHHHHHHHHHHHHHHHHHh
Confidence 000011112222233 4456666666666666777777888765 2222245577777888888899888866554
Q ss_pred -ccCCchhhHhhhHHH
Q psy11547 395 -KMGRRSLTFISSIGC 409 (587)
Q Consensus 395 -~~g~~~~~~~~~~~~ 409 (587)
+......+...+.+.
T Consensus 304 ~~~~~e~~l~~v~~~a 319 (354)
T PF05631_consen 304 KSLRPESLLRYVFAVA 319 (354)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 433333333333333
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.3e-12 Score=129.84 Aligned_cols=152 Identities=13% Similarity=0.202 Sum_probs=123.5
Q ss_pred HHHHhhhcCCCCCccCcchhHHHHHHHHHHHHHHHHhHHHhhhccchhHHHHHhhHHHHHHHHHHHhcCCCCCCcchhhH
Q psy11547 111 AATSQLISRDSPYRITSDESTWIASLSAIGTMVGCVLGGYMMDLVGRKMTLIITEVPTILGWALIALAPSLPSSILPWIF 190 (587)
Q Consensus 111 ~~~~~~~~~~~~~~~s~~~~g~i~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~l~ 190 (587)
...|.+.++ ++|.+..+.+++.+...++..++.+++|+++||+|||+.+..+.+...+......+.++.+ .++
T Consensus 237 ~~~p~~l~~--~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~l 309 (393)
T PRK15011 237 INMPLFIIN--ELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPA-----ILL 309 (393)
T ss_pred HHHHHHHHH--HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHH-----HHH
Confidence 345554432 3788999999998888888889999999999999999988887776666555555566666 778
Q ss_pred HhhhhhhccccccccccceeeeeccCCCcchhHhHHHHHHHHHHHHHHHHhhhhh----hHHHHHHHHHHHHHHHHHHhc
Q psy11547 191 TGRILTGLGSGMVGAPSRIYTAECSQPHLRGMLSSLASFGVSLGVLFEYSLGAFL----SWDTVAAISTIIPVLSIIAGC 266 (587)
Q Consensus 191 ~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l----~wr~~f~~~~~~~~~~~~~~~ 266 (587)
+.+++.+++.|...+....+..|.+|+ +|++++++++....+|..+++.+++.+ +|+..|++.+++.++.+++.+
T Consensus 310 ~~~~l~~~~~g~~~~~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~ 388 (393)
T PRK15011 310 GLQLLNAIYIGILGGIGMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLL 388 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 889988887777767777778888875 599999999999999999999999887 899999998888888777777
Q ss_pred ccCC
Q psy11547 267 LMPE 270 (587)
Q Consensus 267 ~~~e 270 (587)
++||
T Consensus 389 ~~~~ 392 (393)
T PRK15011 389 RIKD 392 (393)
T ss_pred hhcC
Confidence 6765
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=7.4e-12 Score=127.80 Aligned_cols=161 Identities=16% Similarity=0.085 Sum_probs=122.4
Q ss_pred chhhHhcHHHHHHhcCCC-cchHHHHHHHHHHHHHHHHhHHHhhcccCCchhhHhhhHHHHHHHHHHHHHHHhccCCCCC
Q psy11547 351 VNPVTFYAVNIFKDAGAH-VNNNLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPE 429 (587)
Q Consensus 351 ~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (587)
......+.|.+.++.|.+ .+.+.......++..++.++.|++.||+|||+++.++.++.+++.++....
T Consensus 39 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~---------- 108 (434)
T PRK11663 39 RKSFNAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGFS---------- 108 (434)
T ss_pred hhhHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHHH----------
Confidence 334566788888888888 556788888889999999999999999999999999988888887766551
Q ss_pred CCcCccchhHHHHHHHHHHHHHhccccccceeeeeccCCCCchhhHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhHHHH
Q psy11547 430 YKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLTKEGTFLM 509 (587)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~ 509 (587)
.+.+...+...+.+.+.+.. .+....++.|.+|++.|+++.|+.+....+|..+++.+.+.+.+..||++.|.+
T Consensus 109 -----~~~~~l~~~~~l~g~~~g~~-~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~ 182 (434)
T PRK11663 109 -----SSLWAFALLWVLNAFFQGWG-WPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMI 182 (434)
T ss_pred -----hHHHHHHHHHHHHHHHHHcc-chHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 12233333333333333333 344457889999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHhheeccc
Q psy11547 510 YGCISLLGTIFFYVYLPE 527 (587)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~ 527 (587)
.++++++..++..+.+++
T Consensus 183 ~~i~~~~~~~~~~~~~~~ 200 (434)
T PRK11663 183 AGIIAIVVGLFLCWRLRD 200 (434)
T ss_pred HHHHHHHHHHHHHHHcCC
Confidence 877766555444444444
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.5e-10 Score=112.10 Aligned_cols=349 Identities=12% Similarity=0.103 Sum_probs=214.1
Q ss_pred HHHhhhcCCCCCccCcchhH-HHHHHHHHHHHHHHHhHHHhhhccchhHHHHHhhHHHHHHHHHHHhcCCCCCCcchhhH
Q psy11547 112 ATSQLISRDSPYRITSDEST-WIASLSAIGTMVGCVLGGYMMDLVGRKMTLIITEVPTILGWALIALAPSLPSSILPWIF 190 (587)
Q Consensus 112 ~~~~~~~~~~~~~~s~~~~g-~i~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~l~ 190 (587)
..|.+... +.|++..|+. -+.-+..-++....++...+.|..|.|++++++.+...+..++..+.++.. .+-
T Consensus 26 l~~yL~~~--~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~-----~mq 98 (412)
T PF01770_consen 26 LTPYLTGP--DKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVL-----AMQ 98 (412)
T ss_pred chHHHcCC--ccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHH-----HHH
Confidence 34444443 4788888774 566777778888999999999999999999999999999999999999999 999
Q ss_pred HhhhhhhccccccccccceeeeeccCCCcchhHhHHHHHHHHHHHHHHHHhhhhh------hHHHHHHHHHHHHHHHHHH
Q psy11547 191 TGRILTGLGSGMVGAPSRIYTAECSQPHLRGMLSSLASFGVSLGVLFEYSLGAFL------SWDTVAAISTIIPVLSIIA 264 (587)
Q Consensus 191 ~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l------~wr~~f~~~~~~~~~~~~~ 264 (587)
+..++-|++.+. ..+-++|+-...++++-.++.+....+.-+|..++.++|..+ +.+..+++......+.+++
T Consensus 99 ~~q~~yg~~~a~-evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~ 177 (412)
T PF01770_consen 99 LMQFFYGLATAA-EVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALLI 177 (412)
T ss_pred HHHHHHHHHHHH-HHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 999999998765 578888998889999889999999999999999999999877 6677777766666666777
Q ss_pred hcccCCCchHHHhcCCHHHHHHHHHHHhCCCcchHHHHh-----hHHHHHHHHHHHhhhhhhHhHHhhhcCCchHHHHHH
Q psy11547 265 GCLMPESPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQ-----GLYEFSKRQETQKSRNFKETLAAIVEPACLKPFVIL 339 (587)
Q Consensus 265 ~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (587)
.+++|..++-..-+.+..+... .++...++.+...+.. +...........-..-.++.++..+++..++
T Consensus 178 ~~fLP~~~~S~~f~r~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~y~~~~ll~----- 251 (412)
T PF01770_consen 178 ALFLPMPKRSLFFHRKPPAEQD-ANESESDKMNESPESSSSTEKSPSTESSSRKSVLRLLWKDFKSCYSNPRLLL----- 251 (412)
T ss_pred HHHcCCCCcccceeccCccccc-cccccccccccccccccccccCcccccchHHHHHHHHHHHHHHHhcCchHHH-----
Confidence 7777776542221111110000 0000000000000000 0000000000001112233344444444333
Q ss_pred HHHHHHHHhccchhhHhcHHHHHHhcCCC----cchHHHHHHHHHHHHHHHHhHHHhhcccCCchhhHhhhH--HHHHHH
Q psy11547 340 MLYFLIYQFSGVNPVTFYAVNIFKDAGAH----VNNNLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSI--GCGVSM 413 (587)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~----~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~~~~~~~~~~--~~~~~~ 413 (587)
..++.....+++..+..|...+.++..-+ .-.+..-....+.+.++++..|++..++.+..-+.++.. +.+.++
T Consensus 252 WSlWWa~atcgy~qv~nYvQ~LW~~v~~~~~~~vYNG~VeA~~tllgA~~al~~g~v~~~w~~~~~l~l~~~S~l~a~~L 331 (412)
T PF01770_consen 252 WSLWWAFATCGYYQVINYVQSLWDTVPPSDNESVYNGAVEAASTLLGAIAALLAGYVKVNWDRWGELALGVFSLLQAGLL 331 (412)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhcCCCCCCcccchHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHH
Confidence 33333444456777788888888776222 222455556667777788888998666665443333333 223333
Q ss_pred HHHHHHHHhccCCCCCCCcCccchhHHHHHHHHHHHHHhccccccceeeeeccCCCCchhhHHHHHHHHHHHHHHHH
Q psy11547 414 TGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLT 490 (587)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~ 490 (587)
+++.. ..+.|......+++...+.+.. ++...-++.....+.-|..+|+++++..+-..+.
T Consensus 332 ~lm~~---------------t~~Iwv~Y~~yIif~~~y~fli-TiA~~qIA~~l~~e~yaLVFGiNtf~Al~LQtil 392 (412)
T PF01770_consen 332 FLMSF---------------TGNIWVCYAGYIIFRSLYMFLI-TIASFQIAKNLSEERYALVFGINTFVALVLQTIL 392 (412)
T ss_pred HHHHH---------------hhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhccccceeeeeeeHHHHHHHHHHhe
Confidence 33332 2345555556666666555443 3333445555566666888888776665544443
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.4e-11 Score=124.50 Aligned_cols=162 Identities=11% Similarity=0.140 Sum_probs=125.8
Q ss_pred hhhHhcHHHHHHhcCCC-cchHHHHHHHHHHHHHHHHhHHHhhcccCCchhhHhhhHHHHHHHHHHHHHHHhccCCCCCC
Q psy11547 352 NPVTFYAVNIFKDAGAH-VNNNLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEY 430 (587)
Q Consensus 352 ~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (587)
..+....|.+.++.|.+ .+.+.......++..++.++.|++.||+|||+.+..+.++.+++.+++.+
T Consensus 11 ~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~------------ 78 (399)
T TIGR00893 11 ANLSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAF------------ 78 (399)
T ss_pred HhhhHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHH------------
Confidence 34555667777788887 56678888899999999999999999999999999888888777776665
Q ss_pred CcCccchhHHHHHHHHHHHHHhccccccceeeeeccCCCCchhhHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhHHHHH
Q psy11547 431 KFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLTKEGTFLMY 510 (587)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~ 510 (587)
..+.+...+...+.+.+.+ ...+....++.|.+|++.|+++.++......+|..+++.+.+.+.+..+|++.|.+.
T Consensus 79 ---~~~~~~~~~~~~l~g~~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~ 154 (399)
T TIGR00893 79 ---AGAYVSLYILRVLLGAAEA-PFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIE 154 (399)
T ss_pred ---HcCHHHHHHHHHHHHHHHH-hhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHH
Confidence 1223334444444444433 334555588999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHhheecccCC
Q psy11547 511 GCISLLGTIFFYVYLPETK 529 (587)
Q Consensus 511 ~~~~~~~~~~~~~~~~~~~ 529 (587)
+++.++..++.++..++++
T Consensus 155 ~~~~~~~~~~~~~~~~~~~ 173 (399)
T TIGR00893 155 GVLGIIWGVLWLKFIPDPP 173 (399)
T ss_pred HHHHHHHHHHhhheecCCC
Confidence 8877776666555555543
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.34 E-value=7.2e-12 Score=124.40 Aligned_cols=159 Identities=26% Similarity=0.355 Sum_probs=140.9
Q ss_pred hccccccHHHHHhhhcCCCCCccCcchhHHHHHHHHHHHHHHHHhHHHhhhccchhH-HHHHhhHHHHHHHHHHHhcCCC
Q psy11547 103 GMVFGFSAAATSQLISRDSPYRITSDESTWIASLSAIGTMVGCVLGGYMMDLVGRKM-TLIITEVPTILGWALIALAPSL 181 (587)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~i~s~~~l~~~i~~~~~g~l~dr~Grr~-~l~~~~~~~~i~~~~~~~~~~~ 181 (587)
...........|.+..+ .+|.+..+.+++.+...++..++.++.|++.||+|||+ .+..+.++..++.++..+.++.
T Consensus 188 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 265 (352)
T cd06174 188 SFGYYGLLTYLPLYLQE--VLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSL 265 (352)
T ss_pred HhHHHHHHHHHHHHHHH--hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccH
Confidence 33444445556666654 34889999999999999999999999999999999999 9999999999999999999887
Q ss_pred CCCcchhhHHhhhhhhccccccccccceeeeeccCCCcchhHhHHHHHHHHHHHHHHHHhhhhh----hHHHHHHHHHHH
Q psy11547 182 PSSILPWIFTGRILTGLGSGMVGAPSRIYTAECSQPHLRGMLSSLASFGVSLGVLFEYSLGAFL----SWDTVAAISTII 257 (587)
Q Consensus 182 ~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l----~wr~~f~~~~~~ 257 (587)
+ .+++..++.|++.+...+...+++.|..|+++|++.+++......+|..+++.+.+.+ +|+..+++.+++
T Consensus 266 ~-----~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~ 340 (352)
T cd06174 266 A-----LLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAAL 340 (352)
T ss_pred H-----HHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHH
Confidence 7 8899999999999999999999999999999999999999999999999999999887 899999999999
Q ss_pred HHHHHHHhccc
Q psy11547 258 PVLSIIAGCLM 268 (587)
Q Consensus 258 ~~~~~~~~~~~ 268 (587)
.++..+..+++
T Consensus 341 ~~i~~i~~~~~ 351 (352)
T cd06174 341 ALLAALLLLLL 351 (352)
T ss_pred HHHHHHHheec
Confidence 88877766543
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.7e-11 Score=121.11 Aligned_cols=158 Identities=15% Similarity=0.084 Sum_probs=120.6
Q ss_pred hHhcHHHHHHhcCCC-cchHHHHHHHHHHHHHHHHhHHHhhcccCCchhhHhhhHHHHHHHHHHHHHHHhccCCCCCCCc
Q psy11547 354 VTFYAVNIFKDAGAH-VNNNLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKF 432 (587)
Q Consensus 354 ~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (587)
.....|.+.++.|.+ .+.+.......++..++.+..|++.||+|||+++..+.++.+++.+...+
T Consensus 28 ~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~-------------- 93 (390)
T PRK03545 28 PVGLLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSAL-------------- 93 (390)
T ss_pred HHcchHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHH--------------
Confidence 334567788888888 55677777888888899999999999999999999998888888776665
Q ss_pred CccchhHHHHHHHHHHHHHhccccccceeeeeccCCCCchhhHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhHHHHHHH
Q psy11547 433 PAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLTKEGTFLMYGC 512 (587)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~ 512 (587)
..+.+..++...+.+.+. ....+...+++.+.+|++.|+++.|+......+|..++|.+.+.+.+..||++.|++.++
T Consensus 94 -~~~~~~l~~~r~~~G~~~-~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~ 171 (390)
T PRK03545 94 -AWNFTVLLISRIGIAFAH-AIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGG 171 (390)
T ss_pred -hccHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHH
Confidence 123333333333333332 233344457889999999999999999999999999999999999999999999999888
Q ss_pred HHHHHHHHhheeccc
Q psy11547 513 ISLLGTIFFYVYLPE 527 (587)
Q Consensus 513 ~~~~~~~~~~~~~~~ 527 (587)
++++..++.+...|+
T Consensus 172 ~~~l~~~~~~~~~~~ 186 (390)
T PRK03545 172 GALITLLLLIKLLPL 186 (390)
T ss_pred HHHHHHHHHHHhCCC
Confidence 877776655554554
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.34 E-value=7.1e-12 Score=118.97 Aligned_cols=162 Identities=12% Similarity=0.103 Sum_probs=135.2
Q ss_pred chhhHhcHHHHHHhcCCC-cchHHHHHHHHHHHHHHHHhHHHhhcccCCchhhHhhhHHHHHHHHHHHHHHHhccCCCCC
Q psy11547 351 VNPVTFYAVNIFKDAGAH-VNNNLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPE 429 (587)
Q Consensus 351 ~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (587)
-..+..-.|.+.++.+++ .+.+...+.+.+..-++-++.|.++||.+.|+.+.++++++++..+++++
T Consensus 45 RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsai~nil~Gf----------- 113 (448)
T COG2271 45 RKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVNILFGF----------- 113 (448)
T ss_pred HHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHHHHHHHHHhh-----------
Confidence 344666678888888898 67789999999999999999999999999999999999999999999998
Q ss_pred CCcCccchhHHHHHHHHHHHHHhccccccceeeeeccCCCCchhhHHHHHHHHHHHHHHHHHHhh--HHHHHhhhhhhHH
Q psy11547 430 YKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSY--NMFQTHLTKEGTF 507 (587)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~~~~~--g~l~~~~g~~~~~ 507 (587)
....+...++..+-+.+-+.++.|. ...+..-+|+++||+..++.|+..++|+++.|.+. +.+.++.+|+..|
T Consensus 114 ----s~s~~~~~~l~~lng~fQg~Gwpp~-~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f 188 (448)
T COG2271 114 ----SPSLFLFAVLWVLNGWFQGMGWPPC-ARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAF 188 (448)
T ss_pred ----hhHHHHHHHHHHHHHHHhcCCCcHH-HHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhccchhHHH
Confidence 2223344444445555556666555 48889999999999999999999999999999999 8999989999999
Q ss_pred HHHHHHHHHHHHHhheecccC
Q psy11547 508 LMYGCISLLGTIFFYVYLPET 528 (587)
Q Consensus 508 ~~~~~~~~~~~~~~~~~~~~~ 528 (587)
++-++++++..++.++..+++
T Consensus 189 ~~pgiiaiival~~~~~~rd~ 209 (448)
T COG2271 189 YFPGIIAIIVALILLFLLRDR 209 (448)
T ss_pred HHHHHHHHHHHHHHHHHhCCC
Confidence 999999998888877766554
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.7e-11 Score=121.89 Aligned_cols=162 Identities=10% Similarity=0.092 Sum_probs=116.6
Q ss_pred cchhhHhcHHHHHH-hcCCC-cchHHHHHHHHHHHHHHHHhHHHhhcccCCchhhHhhhHHHHHHHHHHHHHHHhccCCC
Q psy11547 350 GVNPVTFYAVNIFK-DAGAH-VNNNLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFW 427 (587)
Q Consensus 350 ~~~~~~~~~~~~~~-~~g~~-~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (587)
+......+.+.+++ +.|.+ .+.+.......+..+++.++.|+++||+|||+++..+.++.+++.+++.+.
T Consensus 22 g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~-------- 93 (395)
T PRK10054 22 GRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLV-------- 93 (395)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHH--------
Confidence 34455555665554 57887 566777888888899999999999999999999988888777776665541
Q ss_pred CCCCcCccchhHHHHHHHHHHHHHhccccccceeeeeccCCCCchhhHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhHH
Q psy11547 428 PEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLTKEGTF 507 (587)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~ 507 (587)
++.+..+....+.+.... ...+...++..|.+|++.|+++.|+.+...++|.+++|.+.+.+.+ .+|+..|
T Consensus 94 -------~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f 164 (395)
T PRK10054 94 -------NNVTLVVLFFALINCAYS-VFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPF 164 (395)
T ss_pred -------hHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHH
Confidence 122233222222222222 3344455778899999999999999999999999999999998875 6899899
Q ss_pred HHHHHHHHHHHHHhheecccC
Q psy11547 508 LMYGCISLLGTIFFYVYLPET 528 (587)
Q Consensus 508 ~~~~~~~~~~~~~~~~~~~~~ 528 (587)
.+.+++.++..++..+..++.
T Consensus 165 ~~~~~~~~i~~i~~~~~~~~~ 185 (395)
T PRK10054 165 WLAAICSAFPLVFIQIWVQRS 185 (395)
T ss_pred HHHHHHHHHHHHHHHHHHhcc
Confidence 888777776655554444443
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.7e-11 Score=122.09 Aligned_cols=164 Identities=12% Similarity=0.086 Sum_probs=124.1
Q ss_pred cchhhHhcHHHHHHhcCCC-cchHHHHHHHHHHHHHHHHhHHHhhcccCCchhhHhhhHHHHHHHHHHHHHHHhccCCCC
Q psy11547 350 GVNPVTFYAVNIFKDAGAH-VNNNLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWP 428 (587)
Q Consensus 350 ~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (587)
+........|.+.++.|.+ .+.+.......++..++.++.|++.||+|||+.+..+.++.+++.+.....
T Consensus 20 ~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~--------- 90 (385)
T TIGR00710 20 GIDMYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALS--------- 90 (385)
T ss_pred HHHHhcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHH---------
Confidence 3444555667788888887 566788888889999999999999999999999998888887777766551
Q ss_pred CCCcCccchhHHHHHHHHHHHHHhccccccceeeeeccCCCCchhhHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhHHH
Q psy11547 429 EYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLTKEGTFL 508 (587)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~ 508 (587)
.+.+...+..++.+.+.+ ...+...+++.|.+|++.|+++.++.+....+|..+++.+.+.+.+..+|+..++
T Consensus 91 ------~~~~~~~~~~~l~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~ 163 (385)
T TIGR00710 91 ------NNIETLLVLRFVQAFGAS-AGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFA 163 (385)
T ss_pred ------ccHHHHHHHHHHHHcchh-HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHH
Confidence 222333333333333332 2334445888999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHhheecccCC
Q psy11547 509 MYGCISLLGTIFFYVYLPETK 529 (587)
Q Consensus 509 ~~~~~~~~~~~~~~~~~~~~~ 529 (587)
+.+++.++..++.++..||++
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~ 184 (385)
T TIGR00710 164 FLSLAGILLSALIFFILPETL 184 (385)
T ss_pred HHHHHHHHHHHHHHHhCCCCC
Confidence 888777777666555555543
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.32 E-value=4.3e-12 Score=128.44 Aligned_cols=145 Identities=14% Similarity=0.199 Sum_probs=121.7
Q ss_pred CcchhHHHHHHHHHHHHHHHHhHHHhhhccchhHHHHHhhHHHHHHHHHHHhcC-CCCCCcchhhHHhhhhhhccccccc
Q psy11547 126 TSDESTWIASLSAIGTMVGCVLGGYMMDLVGRKMTLIITEVPTILGWALIALAP-SLPSSILPWIFTGRILTGLGSGMVG 204 (587)
Q Consensus 126 s~~~~g~i~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~-~~~~~~~~~l~~~r~l~G~~~g~~~ 204 (587)
+..+.+.+.++..++..++.++.|+++||+|||+++.++.++.+++..+..... +.+ ..+.+++.+++.|++.+...
T Consensus 249 ~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~--~~~~l~l~~~l~g~~~~~~~ 326 (418)
T TIGR00889 249 VVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYF--GYALLFLSMIVYGCAFDFFN 326 (418)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchh--hHHHHHHHHHHHHHHHHHHH
Confidence 346779999999999999999999999999999999999999998877777643 221 01156778999999999888
Q ss_pred cccceeeeeccCCCcchhHhHHHH-HHHHHHHHHHHHhhhhh----------hHHHHHHHHHHHHHHHHHHhcc-cCCCc
Q psy11547 205 APSRIYTAECSQPHLRGMLSSLAS-FGVSLGVLFEYSLGAFL----------SWDTVAAISTIIPVLSIIAGCL-MPESP 272 (587)
Q Consensus 205 ~~~~~~i~e~~~~~~r~~~~~~~~-~~~~~G~~i~~~l~~~l----------~wr~~f~~~~~~~~~~~~~~~~-~~esp 272 (587)
+....++.|++|+++|+++.++.+ ...++|.++||++++.+ +|+..|.+.+++.++..++.++ ++|+.
T Consensus 327 ~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~ 406 (418)
T TIGR00889 327 ISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYSH 406 (418)
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 888999999999999999999997 67889999999999877 2899999988887777666655 77763
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.6e-12 Score=130.74 Aligned_cols=144 Identities=12% Similarity=0.101 Sum_probs=123.9
Q ss_pred CccCcchhHHHHHHHHHHHHHHHHhHHHhhhccchhHHHHHhhHHHHHHHHHHHhcCCCCCCcchhhHHhhhhhhccccc
Q psy11547 123 YRITSDESTWIASLSAIGTMVGCVLGGYMMDLVGRKMTLIITEVPTILGWALIALAPSLPSSILPWIFTGRILTGLGSGM 202 (587)
Q Consensus 123 ~~~s~~~~g~i~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~ 202 (587)
.+.+..+.|++.++..++..++.+++|++.||+|||+.+..+.++.+++.++.+++++.+ .+++.+++.|++.+.
T Consensus 257 ~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~-----~~~~~~~l~g~~~~~ 331 (420)
T PRK09528 257 PEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPL-----EVSILKLLHAFEVPF 331 (420)
T ss_pred cCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHH-----HHHHHHHHHHHHHHH
Confidence 456677889999999999999999999999999999999999999999999999998888 888999999999888
Q ss_pred cccccceeeeeccCCCcchhHhHH-HHHHHHHHHHHHHHhhhhh----hHHHHHHHHHHHHHHHHHHhcc-cCCC
Q psy11547 203 VGAPSRIYTAECSQPHLRGMLSSL-ASFGVSLGVLFEYSLGAFL----SWDTVAAISTIIPVLSIIAGCL-MPES 271 (587)
Q Consensus 203 ~~~~~~~~i~e~~~~~~r~~~~~~-~~~~~~~G~~i~~~l~~~l----~wr~~f~~~~~~~~~~~~~~~~-~~es 271 (587)
..+....++.|.+|++.|+...+. ++....+|.++++.+.+++ ||+..|.+.+++.++..++.++ +++.
T Consensus 332 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~~~~~~ 406 (420)
T PRK09528 332 LLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVFTLSGD 406 (420)
T ss_pred HHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 878888899999999988877655 6677889999999999888 8999999988887766555544 4443
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.32 E-value=6.2e-12 Score=126.22 Aligned_cols=137 Identities=14% Similarity=0.078 Sum_probs=119.6
Q ss_pred CccCcchhHHHHHHHHHHHHHHHHhHHHhhhccchhHHHHHhhHHHHHHHHHHHhcCCCCCCcchhhHHhhhhhhccccc
Q psy11547 123 YRITSDESTWIASLSAIGTMVGCVLGGYMMDLVGRKMTLIITEVPTILGWALIALAPSLPSSILPWIFTGRILTGLGSGM 202 (587)
Q Consensus 123 ~~~s~~~~g~i~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~ 202 (587)
++.+..+.+++.+.+.++..++.++.|++.||+|||+.+.++.++..++.++..+.++.. ...+++..++.|++.+.
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~~~g~ 311 (377)
T TIGR00890 235 LGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLN---DVLFLATVALVFFTWGG 311 (377)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccch---hHHHHHHHHHHHHHhcc
Confidence 788888999999999999999999999999999999999999999999888888776543 11345667888998888
Q ss_pred cccccceeeeeccCCCcchhHhHHHHHHHHHHHHHHHHhhhhh----hHHHHHHHHHHHHHHHH
Q psy11547 203 VGAPSRIYTAECSQPHLRGMLSSLASFGVSLGVLFEYSLGAFL----SWDTVAAISTIIPVLSI 262 (587)
Q Consensus 203 ~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l----~wr~~f~~~~~~~~~~~ 262 (587)
..+....++.|.+|+++|+++.++......+|..++|.+.+.+ +|++.|++.+++.++.+
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~~ 375 (377)
T TIGR00890 312 TISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTSL 375 (377)
T ss_pred chhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHhc
Confidence 8888888999999999999999999999999999999998877 89999999887776654
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.31 E-value=8.5e-11 Score=113.26 Aligned_cols=177 Identities=15% Similarity=0.054 Sum_probs=142.0
Q ss_pred hHHHHHHHHHHHHHHhccchhhHhcHHHHHHhcCCC-cchHHHHHHHHHHHHHHHHhHHHhhcccCCchhhHhhhHHHHH
Q psy11547 333 LKPFVILMLYFLIYQFSGVNPVTFYAVNIFKDAGAH-VNNNLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGV 411 (587)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~~~~~~~~~~~~~~ 411 (587)
+.+.+...+..+... +.-+...-.+|.+-++.+.+ ...+...+.++.+..+++++...+.+|+.||+++.....+..+
T Consensus 12 ~~~l~aLa~~~F~ig-ttEfv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~ 90 (394)
T COG2814 12 WLALLALALAAFAIG-TTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIV 90 (394)
T ss_pred hHHHHHHHHHHHHHH-hHHHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHH
Confidence 334444444333333 33455666788888899998 6778999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCCCCCCCcCccchhHHHHHHHHHHHHHhccccccceeeeeccCCCCchhhHHHHHHHHHHHHHHHHH
Q psy11547 412 SMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTV 491 (587)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~~ 491 (587)
+.++..+ .++.+...+.=.+.+...+ .+.++..++..++.|++.|+++.++..+...+...+|.
T Consensus 91 ~n~l~al---------------Ap~f~~Ll~aR~~~g~a~G-~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~Gv 154 (394)
T COG2814 91 SNLLSAL---------------APSFAVLLLARALAGLAHG-VFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGV 154 (394)
T ss_pred HHHHHHH---------------hccHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhc
Confidence 9998887 2333444444344444333 34455568899999999999999999999999999999
Q ss_pred HhhHHHHHhhhhhhHHHHHHHHHHHHHHHhheecc
Q psy11547 492 KSYNMFQTHLTKEGTFLMYGCISLLGTIFFYVYLP 526 (587)
Q Consensus 492 ~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 526 (587)
+++.++-|.+||+.+|++.+++.++..+..+..+|
T Consensus 155 PLGt~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP 189 (394)
T COG2814 155 PLGTFLGQLFGWRATFLAIAVLALLALLLLWKLLP 189 (394)
T ss_pred cHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999988888888
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.31 E-value=6e-11 Score=119.33 Aligned_cols=157 Identities=10% Similarity=0.059 Sum_probs=119.6
Q ss_pred HhcHHHHHHhcCCC-cchHHHHHHHHHHHHHHHHhHHHhhcccCCchhhHhhhHHHHHHHHHHHHHHHhccCCCCCCCcC
Q psy11547 355 TFYAVNIFKDAGAH-VNNNLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFP 433 (587)
Q Consensus 355 ~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (587)
....|.+.++.|.+ .+.+.......+...++.++.|++.||+|||+.+..+.++.+++.++...
T Consensus 40 ~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~--------------- 104 (394)
T PRK10213 40 VSLLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSF--------------- 104 (394)
T ss_pred HhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHH---------------
Confidence 33466777888887 55677777888889999999999999999999999999988887766655
Q ss_pred ccchhHHHHHHHHHHHHHhccccccceeeeeccCCCCchhhHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhHHHHHHHH
Q psy11547 434 AFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLTKEGTFLMYGCI 513 (587)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~ 513 (587)
..+.+..++.-.+.+.+.+. ..+...+++.|.+|++.|+.+.++......+|..++|.+.+.+.+..||++.|++.+++
T Consensus 105 ~~~~~~l~~~r~l~G~~~g~-~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l 183 (394)
T PRK10213 105 ANSFSLLLIGRACLGLALGG-FWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVM 183 (394)
T ss_pred HChHHHHHHHHHHHHHhhHH-HHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 12233444433444444333 34555578899999999999999999999999999999999999999999999988776
Q ss_pred HHHHHHHhheeccc
Q psy11547 514 SLLGTIFFYVYLPE 527 (587)
Q Consensus 514 ~~~~~~~~~~~~~~ 527 (587)
+++..++.....|+
T Consensus 184 ~~~~~l~~~~~~p~ 197 (394)
T PRK10213 184 GVLCIFWIIKSLPS 197 (394)
T ss_pred HHHHHHHHHHHCCC
Confidence 66655444333444
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.8e-11 Score=123.94 Aligned_cols=138 Identities=20% Similarity=0.253 Sum_probs=119.9
Q ss_pred chhHHHHHHHHHHHHHHHHhHHHhhhccchhHHHHHhhHHHHHHHHHHHhcCCCCCCcchhhHHhhhhhhcccccccccc
Q psy11547 128 DESTWIASLSAIGTMVGCVLGGYMMDLVGRKMTLIITEVPTILGWALIALAPSLPSSILPWIFTGRILTGLGSGMVGAPS 207 (587)
Q Consensus 128 ~~~g~i~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~ 207 (587)
.+.++..+.+.++..++.++.|++.||+|+|+.+..+.++.+++.++..+.++.+ .+++.+++.|++.+..++..
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~G~~~~~~~~~~ 323 (399)
T PRK05122 249 DGAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPW-----MALIGAALTGFGFSLVFPAL 323 (399)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHH-----HHHHHHHHHHHhHHHHHHHH
Confidence 3456777888999999999999999999999999999999888888888888877 78888999999999888887
Q ss_pred ceeeeeccCCCcchhHhHHHHHHHHHHHHHHHHhhhhh----hHHHHHHHHHHHHHHHHHHhcccCC
Q psy11547 208 RIYTAECSQPHLRGMLSSLASFGVSLGVLFEYSLGAFL----SWDTVAAISTIIPVLSIIAGCLMPE 270 (587)
Q Consensus 208 ~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l----~wr~~f~~~~~~~~~~~~~~~~~~e 270 (587)
...+.|.+|+++|+++.+++.....+|..+++.+.+.+ +|++.|++.+++.++.+++.+++++
T Consensus 324 ~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 390 (399)
T PRK05122 324 GVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTWLLYR 390 (399)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 77888999999999999999999999999888888777 8999999988888877766665544
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=5.1e-11 Score=120.23 Aligned_cols=177 Identities=12% Similarity=0.072 Sum_probs=128.1
Q ss_pred HHHHHHHHHHHhccchhhHhcHHHHHHhcCCC-cchHHHHHHHHHHHHHHHHhHHHhhcccCCchhhHhhhHHHHHHHHH
Q psy11547 337 VILMLYFLIYQFSGVNPVTFYAVNIFKDAGAH-VNNNLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTG 415 (587)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~ 415 (587)
+.......+....+........|.+.++.+.+ .+.+.......++..++.++.|+++||+|||+.+..+.++..++.++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~ 84 (392)
T PRK10473 5 LLCSFALVLLYPAGIDMYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLL 84 (392)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHH
Confidence 33344444444445555667788888888887 45567777788888999999999999999999999888887777766
Q ss_pred HHHHHHhccCCCCCCCcCccchhHHHHHHHHHHHHHhccccccceeeeeccCCCCchhhHHHHHHHHHHHHHHHHHHhhH
Q psy11547 416 LGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYN 495 (587)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g 495 (587)
+.. ..+.+.......+.+.+.+ ...+...+++.|.+|++.|+++.++.+....++..++|.+.+
T Consensus 85 ~~~---------------~~~~~~~~~~~~l~g~~~~-~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~ 148 (392)
T PRK10473 85 CSL---------------AETSSLFLAGRFLQGIGAG-CCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGH 148 (392)
T ss_pred HHH---------------hCcHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 654 1122222322233332222 223344578899999999999999999999999999999999
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHhheecccCC
Q psy11547 496 MFQTHLTKEGTFLMYGCISLLGTIFFYVYLPETK 529 (587)
Q Consensus 496 ~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 529 (587)
.+.+..+|+..+++.+++.++..++.+...+|++
T Consensus 149 ~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~ 182 (392)
T PRK10473 149 LIMLKFPWQSLFYTMAAMGILVLLLSLFILKETR 182 (392)
T ss_pred HHHhCcChHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 8888889999998888877777766655556543
|
|
| >KOG3762|consensus | Back alignment and domain information |
|---|
Probab=99.27 E-value=4.1e-11 Score=116.68 Aligned_cols=156 Identities=12% Similarity=0.117 Sum_probs=118.2
Q ss_pred chhhHhcHHHHHHhcCCC-cchHHHHHHHHHHHHHHHHhHHHhhcccCCchhhHhhhHHHHHHHHHHHHHHHhccCCCCC
Q psy11547 351 VNPVTFYAVNIFKDAGAH-VNNNLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPE 429 (587)
Q Consensus 351 ~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (587)
...+.+++-..+++.+.. .--+.....--.+.++.-++.+++.+|+|+-+++.+++.+..+=++.+..
T Consensus 387 ~~lv~tFLfWHled~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~----------- 455 (618)
T KOG3762|consen 387 VGLVFTFLFWHLEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSY----------- 455 (618)
T ss_pred HHHHHHHHHHHHhhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHH-----------
Confidence 444555555566666543 22344555555677888899999999999999999888887777666655
Q ss_pred CCcCccchhHHHHHHHHHHHHHhccccccceeeeeccCCCCchhhHHHHHHHHH-HHHHHHHHHhhHHHHHhhhhhhHHH
Q psy11547 430 YKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCAC-HFFIFLTVKSYNMFQTHLTKEGTFL 508 (587)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~-~~g~~i~~~~~g~l~~~~g~~~~~~ 508 (587)
..++|..+.+=++-+......+..+. +|++...|++.++++.++..... .+|-.+|++++|.+...+|....|.
T Consensus 456 ----L~n~W~vLPieilqgit~aliWaa~~-sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~ 530 (618)
T KOG3762|consen 456 ----LQNPWMVLPIEILQGITHALIWAAII-SYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFR 530 (618)
T ss_pred ----hcCchheeeHHHHHHHHHHHHHHHHH-HHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHH
Confidence 34567766666777777777776665 99999999999999999988764 5888899999999999999999999
Q ss_pred HHHHHHHHHHHHhh
Q psy11547 509 MYGCISLLGTIFFY 522 (587)
Q Consensus 509 ~~~~~~~~~~~~~~ 522 (587)
++++.|++..++..
T Consensus 531 ~~giAcl~~l~~~~ 544 (618)
T KOG3762|consen 531 IFGIACLVTLALFI 544 (618)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888777665543
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.1e-11 Score=122.47 Aligned_cols=163 Identities=10% Similarity=0.028 Sum_probs=123.0
Q ss_pred chhhHhcHHHHHHhcCCC-cchHHHHHHHHHHHHHHHHhHHHhhcccCCchhhHhhhHHHHHHHHHHHHHHHhccCCCCC
Q psy11547 351 VNPVTFYAVNIFKDAGAH-VNNNLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPE 429 (587)
Q Consensus 351 ~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (587)
...+....|.+.++.|.+ .+.+.......++..++.++.|+++||+|||+.+..+.++.+++.+++.+.
T Consensus 11 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~---------- 80 (379)
T TIGR00881 11 RKNFALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFS---------- 80 (379)
T ss_pred HHhhhhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHh----------
Confidence 344556677777788888 566788888899999999999999999999999999988888887776651
Q ss_pred CCcCccchhHHHHHHHHHHHHHhccccccceeeeeccCCCCchhhHHHHHHHHHHHHHHHHH-HhhHHHHHhhhhhhHHH
Q psy11547 430 YKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTV-KSYNMFQTHLTKEGTFL 508 (587)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~~-~~~g~l~~~~g~~~~~~ 508 (587)
.+.+..++...+.+ .......+...+++.|.+|++.|+.+.++.+....+|..+++ .+.+.+.+..+|+..|+
T Consensus 81 -----~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 154 (379)
T TIGR00881 81 -----TSLWVMAALWALNG-IFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFI 154 (379)
T ss_pred -----hhHHHHHHHHHHHH-hhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHH
Confidence 22233333333333 333334455568899999999999999999999999999999 46666777788998888
Q ss_pred HHHHHHHHHHHHhheecccCC
Q psy11547 509 MYGCISLLGTIFFYVYLPETK 529 (587)
Q Consensus 509 ~~~~~~~~~~~~~~~~~~~~~ 529 (587)
+.+++.++..++.+++.++.+
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~ 175 (379)
T TIGR00881 155 VPGIIAIIVSLICFLLLRDSP 175 (379)
T ss_pred HHHHHHHHHHHHHheeeCCCc
Confidence 888777776666666666543
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.8e-10 Score=117.05 Aligned_cols=162 Identities=14% Similarity=0.119 Sum_probs=118.2
Q ss_pred cchhhHhcHHHHHHhcCCCc-ch-----HHHHHHHHHHHHHHHHhHHHhhcccCCchhhHhhhHHHHHHHHHHHHHHHhc
Q psy11547 350 GVNPVTFYAVNIFKDAGAHV-NN-----NLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFAT 423 (587)
Q Consensus 350 ~~~~~~~~~~~~~~~~g~~~-~~-----~~~~~~~~~~~~i~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (587)
+......+.|.+.++.|.+. +. +....+..+...++.++.|+++||+|||+.+..+.+..+++.+++...
T Consensus 29 ~~~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~---- 104 (408)
T PRK09874 29 AFSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIVMVLMGLA---- 104 (408)
T ss_pred HHHHhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHHHHHHHHH----
Confidence 34456667788888887762 22 455666778888999999999999999999988887777776655441
Q ss_pred cCCCCCCCcCccchhHHHHHHHHHHHHHhccccccceeeeeccCCCCchhhHHHHHHHHHHHHHHHHHHhhHHHHHhhhh
Q psy11547 424 KDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLTK 503 (587)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~ 503 (587)
.+.+..++...+.+.+ .+..+....++.+.+|++.|+.+.++.+....+|..++|.+.+.+.+..+|
T Consensus 105 -----------~~~~~~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 171 (408)
T PRK09874 105 -----------QNIWQFLILRALLGLL--GGFVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSYGL 171 (408)
T ss_pred -----------hhHHHHHHHHHHHHHh--hhhHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCH
Confidence 1223333333333322 223344446778889999999999999999999999999999999998999
Q ss_pred hhHHHHHHHHHHHHHHHhheecccC
Q psy11547 504 EGTFLMYGCISLLGTIFFYVYLPET 528 (587)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (587)
+..|++.+++.++..+..+++.++.
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (408)
T PRK09874 172 RPVFFITASVLFLCFLVTLFCIREN 196 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccC
Confidence 9999888887777666555555543
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.2e-11 Score=126.75 Aligned_cols=167 Identities=14% Similarity=0.105 Sum_probs=128.1
Q ss_pred HHhccchhhHhcHHHHHHhcCCC-cchHHHHHHHHHHHHHHHHhHHHhhcccCCchhhHhhhHHHHHHHHHHHHHHHhcc
Q psy11547 346 YQFSGVNPVTFYAVNIFKDAGAH-VNNNLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATK 424 (587)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (587)
.............|.+.++.|.+ .+.++......++..++.++.|++.||+|||+.+..+.++..++.++...
T Consensus 13 ~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~------ 86 (485)
T TIGR00711 13 MAVLDSTIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGV------ 86 (485)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhC------
Confidence 33334555667788888888887 56678888899999999999999999999999999998888887776654
Q ss_pred CCCCCCCcCccchhHHHHHHHHHHHHHhccccccceeeeeccCCCCchhhHHHHHHHHHHHHHHHHHHhhHHHHHhhhhh
Q psy11547 425 DFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLTKE 504 (587)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~ 504 (587)
..+.+..++.. ++.+.......+...+++.|.+|++.|+++.++......+|..++|.+.+.+.++.+|+
T Consensus 87 ---------~~~~~~l~~~~-~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~ 156 (485)
T TIGR00711 87 ---------APNLELMIIFR-VIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWR 156 (485)
T ss_pred ---------cCCHHHHHHHH-HHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCce
Confidence 12223333333 33333333344555688999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHhheecccC
Q psy11547 505 GTFLMYGCISLLGTIFFYVYLPET 528 (587)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~~~~~~~ 528 (587)
+.|++.+.++++..++..+..++.
T Consensus 157 ~~f~~~~~~~~~~~~~~~~~~~~~ 180 (485)
T TIGR00711 157 WIFLINVPIGIIVVVVAFFILPRD 180 (485)
T ss_pred ehhhhhhHHHHHHHHHHHHHcCCc
Confidence 999988777776666555555553
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.2e-10 Score=120.76 Aligned_cols=168 Identities=12% Similarity=0.058 Sum_probs=123.5
Q ss_pred HHHHhccchhhHhcHHHHHHhcCCC-cchHHHHHHHHHHHHHHHHhHHHhhcccCCchhhHhhhHHHHHHHHHHHHHHHh
Q psy11547 344 LIYQFSGVNPVTFYAVNIFKDAGAH-VNNNLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFA 422 (587)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (587)
.+........+..+.|.+.++.|.+ .+.++......++..++.++.|++.||+|||+++..+.++.+++.++...
T Consensus 19 ~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~---- 94 (471)
T PRK10504 19 FFMQSLDTTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLFCAL---- 94 (471)
T ss_pred HHHHHHhHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHH----
Confidence 3334444556677889999998888 44556677777888899999999999999999998887777766655443
Q ss_pred ccCCCCCCCcCccchhHHHHHHHHHHHHHhccccccceeeeeccCCCCchhhHHHHHHHHHHHHHHHHHHhhHHHHHhhh
Q psy11547 423 TKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLT 502 (587)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g 502 (587)
..+.+..++...+.+.+.+ ...+...+++.|.+|++.|+++.|+.+....+|..++|.+.+.+.+..|
T Consensus 95 -----------~~~~~~l~~~~~l~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~g 162 (471)
T PRK10504 95 -----------SGTLNELLLARVLQGVGGA-MMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYAS 162 (471)
T ss_pred -----------hCCHHHHHHHHHHHHhhhH-HHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcc
Confidence 1223333333333333333 3345555778899999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHhheeccc
Q psy11547 503 KEGTFLMYGCISLLGTIFFYVYLPE 527 (587)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~~~~~~~ 527 (587)
|++.|.+...++.+..++.....++
T Consensus 163 w~~~f~~~~~~~~l~~~~~~~~~~~ 187 (471)
T PRK10504 163 WHWIFLINIPVGIIGAIATLMLMPN 187 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9999988777766666555444443
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=8.6e-11 Score=121.97 Aligned_cols=175 Identities=11% Similarity=0.071 Sum_probs=129.7
Q ss_pred HHHHHHHHHHhccchhhHhcHHHHHHhcCCC-cchHHHHHHHHHHHHHHHHhHHHhhcccCCchhhHhhhHHHHHHHHHH
Q psy11547 338 ILMLYFLIYQFSGVNPVTFYAVNIFKDAGAH-VNNNLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGL 416 (587)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~ 416 (587)
....+..+........+..-.|.+.++.+.+ .+..+....+.++..++.+..|+++||+|||+.+..+.++..++.++.
T Consensus 9 ~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~~~ 88 (495)
T PRK14995 9 VIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASLAA 88 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 3334444444445556777788888888887 566788888888888999999999999999999999999888888777
Q ss_pred HHHHHhccCCCCCCCcCccchhHHHHHHHHHHHHHhccccccceeeeeccC-CCCchhhHHHHHHHHHHHHHHHHHHhhH
Q psy11547 417 GLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVY-PTKVRGIVGGLTTCACHFFIFLTVKSYN 495 (587)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~r~~~~g~~~~~~~~g~~i~~~~~g 495 (587)
+. ..+.+..++.-.+.+.+.+. ..+.....+.+.+ |++.|+++.|+......+|..++|.+.+
T Consensus 89 ~~---------------a~~~~~li~~r~l~G~g~~~-~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg 152 (495)
T PRK14995 89 AF---------------SPTASWLIATRALLAIGAAM-IVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGG 152 (495)
T ss_pred HH---------------cCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65 22334444333444443333 3343334454554 6789999999999999999999999999
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHhheecccC
Q psy11547 496 MFQTHLTKEGTFLMYGCISLLGTIFFYVYLPET 528 (587)
Q Consensus 496 ~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (587)
.+.++.||++.|++...++++..++..+..|+.
T Consensus 153 ~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~ 185 (495)
T PRK14995 153 ILLEHFYWGSVFLINVPIVLVVMGLTARYVPRQ 185 (495)
T ss_pred HhhccCChHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 999999999999988877777766666666654
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.9e-10 Score=116.80 Aligned_cols=166 Identities=13% Similarity=0.095 Sum_probs=119.6
Q ss_pred HHhccchhhHhcHHHHHHhcCCC-cchHHHHHHHHHHHHHHHHhHHHhhcccCCchhhHhhhHHHHHHHHHHHHHHHhcc
Q psy11547 346 YQFSGVNPVTFYAVNIFKDAGAH-VNNNLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATK 424 (587)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (587)
.............+.+.++.|.+ .+.+.......++..++.++.|++.||+|||+++..+.++.+++.++..+
T Consensus 23 ~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~------ 96 (405)
T TIGR00891 23 LDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGF------ 96 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH------
Confidence 33334555666677777888887 66678888889999999999999999999999999888887777766655
Q ss_pred CCCCCCCcCccchhHHHHHHHHHHHHHhccccccceeeeeccCCCCchhhHHHHHHHHHHHHHHHHHHhhHHHHHhhh--
Q psy11547 425 DFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLT-- 502 (587)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g-- 502 (587)
..+.+..+...++.+.+.+ ...+...+++.|.+|++.|+.+.++.+....+|..+++.+.+.+.+..+
T Consensus 97 ---------~~~~~~l~~~~~l~G~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~ 166 (405)
T TIGR00891 97 ---------APGYITMFIARLVIGIGMG-GEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDG 166 (405)
T ss_pred ---------hccHHHHHHHHHHHHhhhh-hhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 1223333333333333333 3334445888999999999999999999999999999999998888766
Q ss_pred hhhHHHHHHHHHHHHHHHhheecccC
Q psy11547 503 KEGTFLMYGCISLLGTIFFYVYLPET 528 (587)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (587)
|+..|.+.++..++. ++.....||.
T Consensus 167 w~~~f~~~~~~~~~~-~~~~~~~~~~ 191 (405)
T TIGR00891 167 WRALFFISILPIIFA-LWLRKNIPEA 191 (405)
T ss_pred HHHHHHHHHHHHHHH-HHHHHhCCCC
Confidence 888887654444433 3333344543
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.6e-10 Score=116.08 Aligned_cols=161 Identities=7% Similarity=0.023 Sum_probs=122.5
Q ss_pred hhhHhcHHHHHHhcCCC-cchHHHHHHHHHHHHHHHHhHHHhhcccCCchhhHhhhHHHHHHHHHHHHHHHhccCCCCCC
Q psy11547 352 NPVTFYAVNIFKDAGAH-VNNNLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEY 430 (587)
Q Consensus 352 ~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (587)
.......|.+.++.|.+ .+.+.......++..++.++.|++.||+|||+++..+.++.+++.++..+
T Consensus 20 ~~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~------------ 87 (382)
T PRK10091 20 FGIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTL------------ 87 (382)
T ss_pred HHHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHH------------
Confidence 34555778888888887 55678888899999999999999999999999999998888888777665
Q ss_pred CcCccchhHHHHHHHHHHHHHhccccccceeeeeccCCCCchhhHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhHHHHH
Q psy11547 431 KFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLTKEGTFLMY 510 (587)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~ 510 (587)
.++.+...+...+.+.+.+.. .+....++.+.+|++.|+.+.++......++..+++.+.+.+.+..||++.|.+.
T Consensus 88 ---~~~~~~l~~~r~l~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~ 163 (382)
T PRK10091 88 ---SSSYLMLAIGRLVSGFPHGAF-FGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLI 163 (382)
T ss_pred ---hCcHHHHHHHHHHHHhhhHHH-HHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHH
Confidence 223344443333333333322 2333467788899989999999999999999999999999999989999999988
Q ss_pred HHHHHHHHHHhheecccC
Q psy11547 511 GCISLLGTIFFYVYLPET 528 (587)
Q Consensus 511 ~~~~~~~~~~~~~~~~~~ 528 (587)
+++.++..+..++..|+.
T Consensus 164 ~~~~~~~~~~~~~~lp~~ 181 (382)
T PRK10091 164 AVFNIAVLASIYFWVPDI 181 (382)
T ss_pred HHHHHHHHHHHHHhCCCC
Confidence 887776665555555654
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.2e-10 Score=115.94 Aligned_cols=156 Identities=11% Similarity=0.033 Sum_probs=111.6
Q ss_pred cchhhHhcHHHHHHh-cCCC-cchHHHHHHHHHHHHHHHHhHHHhhccc-CCchhhHhhhHHHHHHHHHHHHHHHhccCC
Q psy11547 350 GVNPVTFYAVNIFKD-AGAH-VNNNLAAVIMGIVRLIFTIASCIMMKKM-GRRSLTFISSIGCGVSMTGLGLYIFATKDF 426 (587)
Q Consensus 350 ~~~~~~~~~~~~~~~-~g~~-~~~~~~~~~~~~~~~i~~~~~g~l~d~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (587)
.++.+..++|.++.+ .|++ .+.......+.....++.+++|+++||+ |||+.+.++.++..++.+++....
T Consensus 24 s~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~------ 97 (493)
T PRK15462 24 SFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASE------ 97 (493)
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhh------
Confidence 355566777777765 6787 4556667777788888999999999999 999999999998888876554310
Q ss_pred CCCCCcCccchhHHHHHHHHHHHHHhccccccceeeeeccCCCC--chhhHHHHHHHHHHHHHHHHHHhhHHHHHhhhhh
Q psy11547 427 WPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTK--VRGIVGGLTTCACHFFIFLTVKSYNMFQTHLTKE 504 (587)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~ 504 (587)
.........+.+...+.+ ...+...+++.|.+|++ .|.++.++.+...++|++++|.+.+.+.+..||+
T Consensus 98 --------~~~~~~~l~l~li~iG~G-~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~ 168 (493)
T PRK15462 98 --------IHPSFLYLSLAIIVCGYG-LFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWA 168 (493)
T ss_pred --------cchhHHHHHHHHHHHhcc-cccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChH
Confidence 011112222222222222 22343347889999976 6899999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHH
Q psy11547 505 GTFLMYGCISLLGTIF 520 (587)
Q Consensus 505 ~~~~~~~~~~~~~~~~ 520 (587)
..|.+.++..+++.+.
T Consensus 169 ~~F~iaaigm~l~li~ 184 (493)
T PRK15462 169 MGFGLAAVGMIAGLVI 184 (493)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9998766554444433
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.4e-10 Score=117.83 Aligned_cols=157 Identities=8% Similarity=-0.024 Sum_probs=109.8
Q ss_pred chhhHhcHHHHHHhcCCC-cchHHHHHHHHHHHHHHHHhHHHhhcccCCchhhHhhhHHHHHHHHHHHHHHHhccCCCCC
Q psy11547 351 VNPVTFYAVNIFKDAGAH-VNNNLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPE 429 (587)
Q Consensus 351 ~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (587)
......+.|.+.++.|.+ .+.+.......++..++.++.|++.||+|||+++..+.++.+++.++..+.
T Consensus 52 ~~~~~~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~---------- 121 (476)
T PLN00028 52 TFAAAPLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLV---------- 121 (476)
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHh----------
Confidence 444555667788888887 455566667778888999999999999999999888887777776655541
Q ss_pred CCcCccchhHHHHHHHHHHHHHhccccccceeeeeccCCCCchhhHHHHHHHHHHHHHHHHHHhhHHHHH---------h
Q psy11547 430 YKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQT---------H 500 (587)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~---------~ 500 (587)
.+.+...+..++.+.+.+ ...+. ..++.|.+|++.|+.+.|+.+....+|..+++.+.+.+.. .
T Consensus 122 -----~s~~~l~~~r~l~G~~~~-~~~~~-~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~ 194 (476)
T PLN00028 122 -----SSATGFIAVRFFIGFSLA-TFVSC-QYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSF 194 (476)
T ss_pred -----cCHHHHHHHHHHHHHHHH-hhHHH-HHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcch
Confidence 122222222233333222 22232 3567899999999999999998888888888776665532 2
Q ss_pred hhhhhHHHHHHHHHHHHHHHhhee
Q psy11547 501 LTKEGTFLMYGCISLLGTIFFYVY 524 (587)
Q Consensus 501 ~g~~~~~~~~~~~~~~~~~~~~~~ 524 (587)
.||++.|++.++++++..++.+++
T Consensus 195 ~gWr~~f~i~g~l~l~~~l~~~~~ 218 (476)
T PLN00028 195 TAWRIAFFVPGLLHIIMGILVLTL 218 (476)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHH
Confidence 489999998888877766655443
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=4.2e-11 Score=120.86 Aligned_cols=134 Identities=21% Similarity=0.201 Sum_probs=118.2
Q ss_pred hhHHHHHHHHHHHHHHHHhHHHhhhccchhHHHHHhhHHHHHHHHHHHhcCCCCCCcchhhHHhhhhhhccccccccccc
Q psy11547 129 ESTWIASLSAIGTMVGCVLGGYMMDLVGRKMTLIITEVPTILGWALIALAPSLPSSILPWIFTGRILTGLGSGMVGAPSR 208 (587)
Q Consensus 129 ~~g~i~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 208 (587)
+.++..+.+.++..+++++.|++.||+|+|+.+..+..+.+++.++..+.++.+ .++++.++.|++.+...+...
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~g~~~~~~~~~~~ 324 (392)
T PRK12382 250 MAGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAW-----VALAGAALTGAGCSLIFPALG 324 (392)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHH-----HHHHHHHHHHHHHHhHHHHHH
Confidence 356667778888899999999999999999999999999999988888888777 788899999999988888888
Q ss_pred eeeeeccCCCcchhHhHHHHHHHHHHHHHHHHhhhhh----hHHHHHHHHHHHHHHHHHHhcc
Q psy11547 209 IYTAECSQPHLRGMLSSLASFGVSLGVLFEYSLGAFL----SWDTVAAISTIIPVLSIIAGCL 267 (587)
Q Consensus 209 ~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l----~wr~~f~~~~~~~~~~~~~~~~ 267 (587)
+.+.|.+|+++||++.++++....+|..++|.+.+.+ +|+..|.+.+++.++..++.++
T Consensus 325 ~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 387 (392)
T PRK12382 325 VEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAISAVLGIIVTIL 387 (392)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHh
Confidence 8888999999999999999999999999999999887 8999999988888777665543
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=9e-11 Score=119.11 Aligned_cols=162 Identities=15% Similarity=0.070 Sum_probs=120.0
Q ss_pred chhhHhcHHHHHHhcCCC-cchHHHHHHHHHHHHHHHHhHHHhhcccCCchhhHhhhHHHHHHHHHHHHHHHhccCCCCC
Q psy11547 351 VNPVTFYAVNIFKDAGAH-VNNNLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPE 429 (587)
Q Consensus 351 ~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (587)
........|.+.++.+.+ .+.+.......++.+++.++.|++.||+|||+++..+.++..++.++...
T Consensus 31 ~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~----------- 99 (406)
T PRK11551 31 LQSAGVAAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLATAQ----------- 99 (406)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHH-----------
Confidence 344555667778888887 56678888888999999999999999999999999888777776655544
Q ss_pred CCcCccchhHHHHHHHHHHHHHhccccccceeeeeccCCCCchhhHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhHHHH
Q psy11547 430 YKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLTKEGTFLM 509 (587)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~ 509 (587)
..+.+...+...+.+.+.+. ..+...+++.|.+|++.|+++.++.+....+|..+++.+.+.+.+..+|+..|++
T Consensus 100 ----~~~~~~~~~~~~l~G~~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 174 (406)
T PRK11551 100 ----AWDFPSLLVARLLTGVGLGG-ALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYV 174 (406)
T ss_pred ----hccHHHHHHHHHHHHhhHHH-HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHH
Confidence 12233333333333333333 3344457889999999999999999999999999999998888888899988888
Q ss_pred HHHHHHHHHHHhheecccC
Q psy11547 510 YGCISLLGTIFFYVYLPET 528 (587)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~~ 528 (587)
.+++.++..++...++||+
T Consensus 175 ~~~~~~~~~~~~~~~l~~~ 193 (406)
T PRK11551 175 GGVGPLLLVPLLMRWLPES 193 (406)
T ss_pred HHHHHHHHHHHHHHhCCCC
Confidence 7766665555444555554
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.2e-10 Score=115.92 Aligned_cols=160 Identities=10% Similarity=0.049 Sum_probs=118.1
Q ss_pred hHhcHHHHHHhcCCC-cchHHHHHHHHHHHHHHHHhHHHhhcccCCchhhHhhhHHHHHHHHHHHHHHHhccCCCCCCCc
Q psy11547 354 VTFYAVNIFKDAGAH-VNNNLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKF 432 (587)
Q Consensus 354 ~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (587)
..--.|.+.++.+.+ ........++.++..++.++.|+++||+|||+++..+.++.+++.++...
T Consensus 35 ~~p~l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~-------------- 100 (413)
T PRK15403 35 IQPGIINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLF-------------- 100 (413)
T ss_pred hccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHH--------------
Confidence 334445566677777 44566777788889999999999999999999999888887777766655
Q ss_pred CccchhHHHHHHHHHHHHHhccccccceeeeeccCCCCchhhHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhHHHHHHH
Q psy11547 433 PAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLTKEGTFLMYGC 512 (587)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~ 512 (587)
..+.+..++.-++.+.+.+ ...+..+.++.|.+|++.++++.++.+....++..++|.+.+.+.+..||++.|++.++
T Consensus 101 -a~~~~~l~~~r~l~Gi~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~ 178 (413)
T PRK15403 101 -TTSMTQFLIARFIQGTSIC-FIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAV 178 (413)
T ss_pred -cCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 2233333333333333332 22334456788999999999999999999999999999999999988899999999888
Q ss_pred HHHHHHHHhheecccCC
Q psy11547 513 ISLLGTIFFYVYLPETK 529 (587)
Q Consensus 513 ~~~~~~~~~~~~~~~~~ 529 (587)
+.++..+..++..||++
T Consensus 179 ~~~i~~~~~~~~lp~~~ 195 (413)
T PRK15403 179 MGLIAFVGLLLAMPETV 195 (413)
T ss_pred HHHHHHHHHHHhCCCCc
Confidence 87777665555566653
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.23 E-value=7.2e-11 Score=117.30 Aligned_cols=159 Identities=16% Similarity=0.191 Sum_probs=119.8
Q ss_pred hhHhcHH-HHHHhcCCC-cchHHHHHHHHHHHHHHHHhHHHhhcccCCchhhHhhhHHHHHHHHHHHHHHHhccCCCCCC
Q psy11547 353 PVTFYAV-NIFKDAGAH-VNNNLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEY 430 (587)
Q Consensus 353 ~~~~~~~-~~~~~~g~~-~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (587)
......| .+.++.|.+ .+.++......+...++.++.|++.||+|||+++..+.++.+++.++..+
T Consensus 14 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~------------ 81 (352)
T PF07690_consen 14 IISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAF------------ 81 (352)
T ss_dssp HHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH------------
T ss_pred HHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhh------------
Confidence 3444555 555667777 56678888889999999999999999999999999998888888444443
Q ss_pred CcCccchhHHHHHHHHHHHHHhccccccceeeeeccCCCCchhhHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhHHHHH
Q psy11547 431 KFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLTKEGTFLMY 510 (587)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~ 510 (587)
..+.+..++..++.+.+. ....+....++.|.+|++.|+++.++......+|..+++.+.+.+.+..+|+..|++.
T Consensus 82 ---~~~~~~~~~~~~l~g~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~ 157 (352)
T PF07690_consen 82 ---ASNFWLLLIARFLLGIGS-GFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLIS 157 (352)
T ss_dssp ---HCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHH
T ss_pred ---hhhHHHHhhhcccccccc-ccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccccccccccc
Confidence 113343333333333333 3444555689999999999999999999999999999999999999889999999999
Q ss_pred HHHHHHHHHHhheeccc
Q psy11547 511 GCISLLGTIFFYVYLPE 527 (587)
Q Consensus 511 ~~~~~~~~~~~~~~~~~ 527 (587)
+++.++..++...+.++
T Consensus 158 ~~~~~~~~il~~~~~~~ 174 (352)
T PF07690_consen 158 AILSLIAAILFILFLPE 174 (352)
T ss_dssp HHHHHHHHHHHHCCC--
T ss_pred cchhhhhhhhHhhhhhh
Confidence 98888887754444443
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.3e-10 Score=115.97 Aligned_cols=160 Identities=8% Similarity=0.023 Sum_probs=117.9
Q ss_pred chhhHhcHHHHHHhcCCC-cchHHHHHHHHHHHHHHHHhHHHhhcccCCchhhHhhhHHHHHHHHHHHHHHHhccCCCCC
Q psy11547 351 VNPVTFYAVNIFKDAGAH-VNNNLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPE 429 (587)
Q Consensus 351 ~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (587)
........|.+..+.+.+ .+.+.......++.+++.++.|+++||+|||+.+..+.++..++.+++...... .
T Consensus 15 ~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~-~----- 88 (365)
T TIGR00900 15 TAITQVALPLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALL-G----- 88 (365)
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHc-C-----
Confidence 334555566677777666 556778888889999999999999999999999998888777776666553322 0
Q ss_pred CCcCccchhHHHHHHHHHHHHHhccccccceeeeeccCCCCchhhHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhHHHH
Q psy11547 430 YKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLTKEGTFLM 509 (587)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~ 509 (587)
..+.+...+...+.+.+.+ ...+...+++.|.+|++.|+++.|+.+....+|..++|.+.+.+.+..||+..|++
T Consensus 89 ----~~~~~~~~~~~~l~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~ 163 (365)
T TIGR00900 89 ----GLNIWQVYVLAGILAIAQA-FFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWV 163 (365)
T ss_pred ----CCcHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 0123333333333333333 33455568899999999999999999999999999999999999999999998887
Q ss_pred HHHHHHHHHHHh
Q psy11547 510 YGCISLLGTIFF 521 (587)
Q Consensus 510 ~~~~~~~~~~~~ 521 (587)
.++..++..++.
T Consensus 164 ~~~~~~~~~~~~ 175 (365)
T TIGR00900 164 DAVGFAISALLI 175 (365)
T ss_pred HHHHHHHHHHHH
Confidence 776665554443
|
|
| >KOG1330|consensus | Back alignment and domain information |
|---|
Probab=99.21 E-value=8.8e-12 Score=119.50 Aligned_cols=165 Identities=11% Similarity=0.098 Sum_probs=133.9
Q ss_pred hhhHhcHHHHHHhcCCC-cchHHHHHHHHHHHHHHHHhHHHhhcccCCchhhHhhhHHHHHHHHHHHHHHHhccCCCCCC
Q psy11547 352 NPVTFYAVNIFKDAGAH-VNNNLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEY 430 (587)
Q Consensus 352 ~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (587)
+.+....+...+.++.+ ...++......++.++++++.|++.||++|++++.+|..+..++.+..++.
T Consensus 50 ~~iagv~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs----------- 118 (493)
T KOG1330|consen 50 YTIAGVLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASGFS----------- 118 (493)
T ss_pred hhhhhhhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHH-----------
Confidence 33333334444445666 556788899999999999999999999999999999999999998888873
Q ss_pred CcCccchhHHHHHHHHHHHHHhccccccceeeeeccCCCCchhhHHHHHHHHHHHHHHHHHHhhHHHHHhhh-hhhHHHH
Q psy11547 431 KFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLT-KEGTFLM 509 (587)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g-~~~~~~~ 509 (587)
...+.+++.=.+.+.....+.|+..++++|.+|.+.|++++++.++...+|..+|-.+...+.+..+ |++.|..
T Consensus 119 -----~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~ 193 (493)
T KOG1330|consen 119 -----NHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRG 193 (493)
T ss_pred -----HHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCccceEEEEEe
Confidence 2334455555556666677788888999999999999999999999999999888888887777776 9999999
Q ss_pred HHHHHHHHHHHhheecccCCCCC
Q psy11547 510 YGCISLLGTIFFYVYLPETKNKT 532 (587)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~~~~ 532 (587)
.+++.++..++..++.+|..++.
T Consensus 194 ~avl~vi~~~L~~~f~~eP~rga 216 (493)
T KOG1330|consen 194 SAVLGVIVGLLVFLFVREPERGA 216 (493)
T ss_pred ehHHHHHHHHHHHhhccCccccc
Confidence 99999999998888888876653
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.6e-10 Score=117.15 Aligned_cols=162 Identities=12% Similarity=0.031 Sum_probs=110.2
Q ss_pred hHhcHHHHHHhcCCC-cchHHHHHHHHHHHHHHHHhHHHhhcccCCchhhHhhhHHHHHHHHHHHHHHHhccCCCCCCCc
Q psy11547 354 VTFYAVNIFKDAGAH-VNNNLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKF 432 (587)
Q Consensus 354 ~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (587)
+....|++.++ |.+ .+.+.......++..++.++.|+++||+|||+++..+.++.+++.+.+.+....
T Consensus 48 ~~~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~---------- 116 (452)
T PRK11273 48 FALAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWA---------- 116 (452)
T ss_pred HHHhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhcc----------
Confidence 34556766665 887 566777888889999999999999999999999999988888777766652211
Q ss_pred CccchhHHHHHHHHHHHHHhccccccceeeeeccCCCCchhhHHHHHHHHHHHHHHH-HHHhhHHHHHhhhhhhHHHHHH
Q psy11547 433 PAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFL-TVKSYNMFQTHLTKEGTFLMYG 511 (587)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i-~~~~~g~l~~~~g~~~~~~~~~ 511 (587)
....+..++...+.+.+.+.. .+.....+.+.+|++.|+++.|+.+....+|+.+ ++.+...+....||+..|++.+
T Consensus 117 -~~~~~~~~~~~~l~gi~~g~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~ 194 (452)
T PRK11273 117 -TSSIAVMFVLLFLCGWFQGMG-WPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPA 194 (452)
T ss_pred -cccHHHHHHHHHHHHHHHhcc-chHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHH
Confidence 012222233333333333333 3333366788899999999999999888888654 4443333333458898998888
Q ss_pred HHHHHHHHHhheecccC
Q psy11547 512 CISLLGTIFFYVYLPET 528 (587)
Q Consensus 512 ~~~~~~~~~~~~~~~~~ 528 (587)
+++++..++.+++++++
T Consensus 195 ~~~~~~~~l~~~~~~~~ 211 (452)
T PRK11273 195 FAAILVALFAFAMMRDT 211 (452)
T ss_pred HHHHHHHHHHHHHccCC
Confidence 77777666555665553
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.3e-10 Score=118.80 Aligned_cols=162 Identities=10% Similarity=0.033 Sum_probs=112.8
Q ss_pred hHhcHHHHHHhcCCC-cchHHHHHHHHHHHHHHHHhHHHhhcccCCchhhHhhhHHHHHHHHHHHHHHHhccCCCCCCCc
Q psy11547 354 VTFYAVNIFKDAGAH-VNNNLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKF 432 (587)
Q Consensus 354 ~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (587)
+....|.+.+ .|.+ .+.+.......++..++.++.|++.||+|||+.+..+.++.+++.+++......
T Consensus 46 ~~~~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~---------- 114 (438)
T TIGR00712 46 FALAMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWA---------- 114 (438)
T ss_pred HHhhhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhccccc----------
Confidence 3444565544 5787 556778888889999999999999999999999888877777776665431110
Q ss_pred CccchhHHHHHHHHHHHHHhccccccceeeeeccCCCCchhhHHHHHHHHHHHHHHHHHHhhHHHHH-hhhhhhHHHHHH
Q psy11547 433 PAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQT-HLTKEGTFLMYG 511 (587)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~-~~g~~~~~~~~~ 511 (587)
....+...+...+.+.+.+... +.....+.|.+|++.|+++.|+.++...+++.+++.+.+...+ ..+|+..|++.+
T Consensus 115 -~~~~~~l~~~~~l~g~~~g~~~-~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~ 192 (438)
T TIGR00712 115 -TSSIAIMFVLLFLNGWFQGMGW-PPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPA 192 (438)
T ss_pred -cchHHHHHHHHHHHHHHhhcch-HHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 0111222222233333333333 3334677899999999999999999999999999888776554 468999999888
Q ss_pred HHHHHHHHHhheecccC
Q psy11547 512 CISLLGTIFFYVYLPET 528 (587)
Q Consensus 512 ~~~~~~~~~~~~~~~~~ 528 (587)
+++++..++.+++.+|.
T Consensus 193 ~~~~i~~~~~~~~~~~~ 209 (438)
T TIGR00712 193 ICAIIVALFAFAMMRDT 209 (438)
T ss_pred HHHHHHHHHHHHhccCC
Confidence 88777666665655553
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.20 E-value=5e-11 Score=119.64 Aligned_cols=142 Identities=14% Similarity=0.223 Sum_probs=120.7
Q ss_pred CccCcchhHHHHHHHHHHHHHHHHhHHHhhhccchhHHHHHhhHHHHHHHHHHHhcCCCCCCcchhhHHhhhhhhccccc
Q psy11547 123 YRITSDESTWIASLSAIGTMVGCVLGGYMMDLVGRKMTLIITEVPTILGWALIALAPSLPSSILPWIFTGRILTGLGSGM 202 (587)
Q Consensus 123 ~~~s~~~~g~i~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~ 202 (587)
+|.++.+.+++.+...+...++.++.|++.||+|||+++.++.++..++.++..+.++.+ .+++.+++.|++.+.
T Consensus 230 ~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~g~~~g~ 304 (375)
T TIGR00899 230 LGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLW-----ALLMLQLLNAIFIGI 304 (375)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHH
Confidence 788899999998888888888999999999999999999888877766666666667776 778889999999888
Q ss_pred cccccceeeeeccCCCcchhHhHHHHHHHHHHHHHHHHhhhhh----hHHHHHHHHHHHHHHHHHHhcccCC
Q psy11547 203 VGAPSRIYTAECSQPHLRGMLSSLASFGVSLGVLFEYSLGAFL----SWDTVAAISTIIPVLSIIAGCLMPE 270 (587)
Q Consensus 203 ~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l----~wr~~f~~~~~~~~~~~~~~~~~~e 270 (587)
..+....++.|..|+ +++++++++.....+|..++|.+++.+ +|+..|++.+++.++..++..+++|
T Consensus 305 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 375 (375)
T TIGR00899 305 LAGIGMLYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCLLLIKD 375 (375)
T ss_pred HHHHHHHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHheecC
Confidence 888888888898876 567999999999999999999999887 8999999999888887777665543
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=3.2e-10 Score=115.02 Aligned_cols=163 Identities=12% Similarity=0.032 Sum_probs=117.5
Q ss_pred chhhHhcHHHHHHhcCCC-cchHHHHHHHHHHHHHHHHhHHHhhcccCCchhhHhhhHHHHHHHHHHHHHHHhccCCCCC
Q psy11547 351 VNPVTFYAVNIFKDAGAH-VNNNLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPE 429 (587)
Q Consensus 351 ~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (587)
...+....+.+.++.+.+ ...+.......++..++.++.|+++||+|||+.+..+....+++.+....
T Consensus 29 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~----------- 97 (406)
T PRK15402 29 NDMIQPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILL----------- 97 (406)
T ss_pred hhhHhcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHH-----------
Confidence 333444556677788887 44566777888889999999999999999999998888777777666554
Q ss_pred CCcCccchhHHHHHHHHHHHHHhccccccceeeeeccCCCCchhhHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhHHHH
Q psy11547 430 YKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLTKEGTFLM 509 (587)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~ 509 (587)
..+.+..+....+.+.+.+ ...+...+.+.|.+|++.|..+.++......++..++|.+.+.+.+..+|++.|++
T Consensus 98 ----~~~~~~l~~~~~l~G~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~ 172 (406)
T PRK15402 98 ----AQSIEQFTLLRFLQGIGLC-FIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVL 172 (406)
T ss_pred ----HccHHHHHHHHHHHHhHhh-hHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHH
Confidence 1122232222222222222 22344457778999999999999998888888999999999999998899999988
Q ss_pred HHHHHHHHHHHhheecccCC
Q psy11547 510 YGCISLLGTIFFYVYLPETK 529 (587)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~ 529 (587)
.++++++..+..++..||++
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~ 192 (406)
T PRK15402 173 FAALAALSFFGLWRAMPETA 192 (406)
T ss_pred HHHHHHHHHHHHHHhCCCCC
Confidence 88887776665555556543
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=4e-10 Score=113.62 Aligned_cols=159 Identities=10% Similarity=-0.010 Sum_probs=115.8
Q ss_pred hhhHhcHHHH-HHhcCCC-cchHHHHHHHHHHHHHHHHhHHHhhcccCCchhhHhhhHHHHHHHHHHHHHHHhccCCCCC
Q psy11547 352 NPVTFYAVNI-FKDAGAH-VNNNLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPE 429 (587)
Q Consensus 352 ~~~~~~~~~~-~~~~g~~-~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (587)
+....+.+.+ .++.|.+ ...+.......+...+..++.|+++||+|||+++..+.++.+++.+.+..
T Consensus 27 ~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~----------- 95 (400)
T PRK11646 27 FVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAI----------- 95 (400)
T ss_pred HHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHH-----------
Confidence 3344444444 4567887 55667777778888888999999999999999999999988888877655
Q ss_pred CCcCccchhHHHHHHHHHHHHHhccccccceeeeeccCCCCchhhHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhHHHH
Q psy11547 430 YKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLTKEGTFLM 509 (587)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~ 509 (587)
.++.+...+...+.+.+. ....+...+++.+.+|++.|+++.|+......+|..++|.+.+.+. ..||++.|++
T Consensus 96 ----~~~~~~l~~~~~l~g~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~ 169 (400)
T PRK11646 96 ----AHEPWLLWLSCILSGLGG-TLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QYDFRLVCAT 169 (400)
T ss_pred ----hccHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHH
Confidence 122333333333333332 2333444577889999999999999999999999999999999998 6799999988
Q ss_pred HHHHHHHHHHHhheeccc
Q psy11547 510 YGCISLLGTIFFYVYLPE 527 (587)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~ 527 (587)
.++++++..++..++.++
T Consensus 170 ~~~~~~~~~i~~~~~~~~ 187 (400)
T PRK11646 170 GAVLFVLAAAFNAWLLPA 187 (400)
T ss_pred HHHHHHHHHHHHHHhCCc
Confidence 877766665544444444
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=4.7e-10 Score=113.31 Aligned_cols=160 Identities=9% Similarity=-0.025 Sum_probs=115.5
Q ss_pred hhHhcHHHHHHhcCCC-cchHHHHHHHHHHHHHHHHhHHHhhcccCCchhhHhhhHHHHHHHHHHHHHHHhccCCCCCCC
Q psy11547 353 PVTFYAVNIFKDAGAH-VNNNLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYK 431 (587)
Q Consensus 353 ~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (587)
......|.+.++.+.+ .+.+.......+...++.++.|+++||+|||+.+..+.++..++.+....
T Consensus 26 ~~~p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~------------- 92 (394)
T PRK11652 26 IYVPAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALF------------- 92 (394)
T ss_pred HHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHH-------------
Confidence 3444567778888888 55677788888999999999999999999999998888877777666544
Q ss_pred cCccchhHHHHHHHHHHHHHhccccccceeeeeccCCCCchhhHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhHHHHHH
Q psy11547 432 FPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLTKEGTFLMYG 511 (587)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~ 511 (587)
..+.+...+...+.+.+.+ ...+....+..|.++.+.++.+.++.+....++..++|.+.+.+.+..||+..|++.+
T Consensus 93 --~~~~~~l~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~ 169 (394)
T PRK11652 93 --AHSLTVLIAASAIQGLGTG-VGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLL 169 (394)
T ss_pred --HccHHHHHHHHHHHHhhhh-HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHH
Confidence 1122223233233332222 2223334566788888889999999998999999999999999999889999998887
Q ss_pred HHHHHHHHHhheecccC
Q psy11547 512 CISLLGTIFFYVYLPET 528 (587)
Q Consensus 512 ~~~~~~~~~~~~~~~~~ 528 (587)
++.++..++..++.||+
T Consensus 170 ~~~~~~~~~~~~~~~~~ 186 (394)
T PRK11652 170 LLGAGVTFSMARWMPET 186 (394)
T ss_pred HHHHHHHHHHHHhCCcc
Confidence 76665555444555654
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.7e-10 Score=119.96 Aligned_cols=163 Identities=14% Similarity=0.044 Sum_probs=121.3
Q ss_pred cccHHHHHhhhcCCCCCccCcchhHHHHHHHHHHHHHHHHhHHHhhhccchhHHHHHhhHHHHHHHHHHHhc---CCCCC
Q psy11547 107 GFSAAATSQLISRDSPYRITSDESTWIASLSAIGTMVGCVLGGYMMDLVGRKMTLIITEVPTILGWALIALA---PSLPS 183 (587)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~s~~~~g~i~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~---~~~~~ 183 (587)
.......|.+..+ +|.+..+.++......++..++.+++|+++||+|||+.+.++.++.+++.++.++. .....
T Consensus 301 ~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (481)
T TIGR00879 301 NAIMYYSPTIFEN---AGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGS 377 (481)
T ss_pred eehHHHHHHHHHH---cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCc
Confidence 3344556666654 78888888999999999999999999999999999999999988888887777631 11100
Q ss_pred ---CcchhhHHhhhhhhccccccccccceeeeeccCCCcchhHhHHHHHHHHHHHHHHHHhhhhh----hHHHHHHHHHH
Q psy11547 184 ---SILPWIFTGRILTGLGSGMVGAPSRIYTAECSQPHLRGMLSSLASFGVSLGVLFEYSLGAFL----SWDTVAAISTI 256 (587)
Q Consensus 184 ---~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l----~wr~~f~~~~~ 256 (587)
.....+....++.+.......+....++.|.+|+++|++++++......+|.++++.+.+.+ +|++.|++.++
T Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~ 457 (481)
T TIGR00879 378 SKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGG 457 (481)
T ss_pred ccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHH
Confidence 01112223333333323334466777789999999999999999999999999999988876 79999999888
Q ss_pred HHHHHHHHhcc-cCCCc
Q psy11547 257 IPVLSIIAGCL-MPESP 272 (587)
Q Consensus 257 ~~~~~~~~~~~-~~esp 272 (587)
++++..++.++ .||++
T Consensus 458 ~~~~~~i~~~~~~~~~~ 474 (481)
T TIGR00879 458 LNVLGLIFVYFFLPETK 474 (481)
T ss_pred HHHHHHHHHheecccCC
Confidence 88877766654 67654
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.19 E-value=5.5e-10 Score=114.84 Aligned_cols=154 Identities=11% Similarity=0.025 Sum_probs=115.5
Q ss_pred cchhhHhcHHHHHHh---cCCC-cchHHHHHHHHHHHHHHHHhHHHhhcc-cCCchhhHhhhHHHHHHHHHHHHHHHhcc
Q psy11547 350 GVNPVTFYAVNIFKD---AGAH-VNNNLAAVIMGIVRLIFTIASCIMMKK-MGRRSLTFISSIGCGVSMTGLGLYIFATK 424 (587)
Q Consensus 350 ~~~~~~~~~~~~~~~---~g~~-~~~~~~~~~~~~~~~i~~~~~g~l~d~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (587)
+++.+..+++.++.+ .|++ .+.+.......+...++.+++|+++|| +|||+++.++.++.+++.+++..
T Consensus 25 ~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~------ 98 (475)
T TIGR00924 25 SYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAM------ 98 (475)
T ss_pred HHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHh------
Confidence 455566677777765 5777 566788888889999999999999999 89999999999998888877765
Q ss_pred CCCCCCCcCccchhHHHHHHHHHHHHHhccccccceeeeeccCCCCc---hhhHHHHHHHHHHHHHHHHHHhhHHHHHhh
Q psy11547 425 DFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKV---RGIVGGLTTCACHFFIFLTVKSYNMFQTHL 501 (587)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~---r~~~~g~~~~~~~~g~~i~~~~~g~l~~~~ 501 (587)
....+...+...+.+.+ .....+...+++++.+|++. |+.+.++.+...++|.+++|.+.+.+.+..
T Consensus 99 ---------~~~~~~~~~~~~l~g~g-~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~ 168 (475)
T TIGR00924 99 ---------SIYPDLIFYGLGTIAVG-SGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENY 168 (475)
T ss_pred ---------cccHhHHHHHHHHHHhc-cccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 12222232333333322 23334454578888888754 888999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHH
Q psy11547 502 TKEGTFLMYGCISLLGTI 519 (587)
Q Consensus 502 g~~~~~~~~~~~~~~~~~ 519 (587)
||+..|.+.++.++++.+
T Consensus 169 g~~~~f~~~~~~~~~~~l 186 (475)
T TIGR00924 169 GYHVGFNLAAVGMVIGLL 186 (475)
T ss_pred ChHHHHHHHHHHHHHHHH
Confidence 999999887765555443
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.4e-10 Score=115.67 Aligned_cols=147 Identities=14% Similarity=0.070 Sum_probs=112.1
Q ss_pred ccchhhHhcHHHHHHhcCCC-cchHHHHHHHHHHHHHHHHhHHHhhcccCCchhhHhhhHHHHHHHHHHHHHHHhccCCC
Q psy11547 349 SGVNPVTFYAVNIFKDAGAH-VNNNLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFW 427 (587)
Q Consensus 349 ~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (587)
.......+..|.+.++.|.+ .+.+.......++..++.++.|++.||+|||+++..+.++.+++.++..+.
T Consensus 32 ~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~-------- 103 (426)
T PRK12307 32 FDFMLIFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLA-------- 103 (426)
T ss_pred hHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHH--------
Confidence 34445566667777788887 556777888889999999999999999999999999999888887776652
Q ss_pred CCCCcCccchhHHHHHHHHHHHHHhccccccceeeeeccCCCCchhhHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhHH
Q psy11547 428 PEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLTKEGTF 507 (587)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~ 507 (587)
.+.+...+.-.+.+.+.+ ...+....++.|.+|++.|+++.++......+|..+++.+.+.+.+..+|++.|
T Consensus 104 -------~~~~~l~~~r~l~G~g~g-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f 175 (426)
T PRK12307 104 -------SGVIMLTLSRFIVGMGMA-GEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAF 175 (426)
T ss_pred -------hHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHH
Confidence 222333333333333333 333444578899999999999999999999999999999999888888999888
Q ss_pred HHHH
Q psy11547 508 LMYG 511 (587)
Q Consensus 508 ~~~~ 511 (587)
++.+
T Consensus 176 ~i~~ 179 (426)
T PRK12307 176 FVGL 179 (426)
T ss_pred HHHH
Confidence 7643
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.7e-10 Score=114.38 Aligned_cols=159 Identities=13% Similarity=0.095 Sum_probs=121.5
Q ss_pred hHhcHHHHHHhcCCC-cchHHHHHHHHHHHHHHHHhHHHhhcccCCchhhHhhhHHHHHHHHHHHHHHHhccCCCCCCCc
Q psy11547 354 VTFYAVNIFKDAGAH-VNNNLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKF 432 (587)
Q Consensus 354 ~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (587)
.....|.+.++.|.+ .+.+.......++..++.++.|++.||+|||+.+..+.++.+++.+.+...
T Consensus 10 ~~p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~------------- 76 (377)
T PRK11102 10 YLPALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALA------------- 76 (377)
T ss_pred HhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHH-------------
Confidence 445567777888887 566777888889999999999999999999999999888888887776651
Q ss_pred CccchhHHHHHHHHHHHHHhccccccceeeeeccCCCCchhhHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhHHHHHHH
Q psy11547 433 PAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLTKEGTFLMYGC 512 (587)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~ 512 (587)
.+.+...+...+.+.+.+ ...+...+++.|.+|++.|+++.++.+....+|..++|.+.+.+.+..+|+..|++.++
T Consensus 77 --~~~~~~~~~~~l~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~ 153 (377)
T PRK11102 77 --QTIDQLIYMRFLHGLAAA-AASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLAL 153 (377)
T ss_pred --ccHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHH
Confidence 222333333333333333 23344457889999999999999999999999999999999999998999999988888
Q ss_pred HHHHHHHHhheecccC
Q psy11547 513 ISLLGTIFFYVYLPET 528 (587)
Q Consensus 513 ~~~~~~~~~~~~~~~~ 528 (587)
++++..++..+..+|+
T Consensus 154 ~~~~~~~~~~~~~~~~ 169 (377)
T PRK11102 154 AAILAAALVFFFIPET 169 (377)
T ss_pred HHHHHHHHHHHhCCcc
Confidence 7777766655555554
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=7.5e-10 Score=112.66 Aligned_cols=165 Identities=10% Similarity=0.090 Sum_probs=115.4
Q ss_pred chhhHhcHHHHHHhcCCC-cchHHHHHHHHHHHHHHHHhHHHhhcccCCchhhHhhhHHHHHHHHHHHHHHHhccCCCCC
Q psy11547 351 VNPVTFYAVNIFKDAGAH-VNNNLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPE 429 (587)
Q Consensus 351 ~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (587)
........|.+.++.+.+ .+.+.......+..+++.++.|++.||+|||+++..+.++.+++.+.+...... .
T Consensus 33 ~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~-~----- 106 (417)
T PRK10489 33 LGLLGVAVPVQIQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFL-P----- 106 (417)
T ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHc-C-----
Confidence 344556677777776666 556788888889999999999999999999999888877776666555432211 0
Q ss_pred CCcCccchhHHHHHHHHHHHHHhccccccceeeeeccCCCCchhhHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhHHHH
Q psy11547 430 YKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLTKEGTFLM 509 (587)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~ 509 (587)
....+...+..++.+.+.+.. .+...+++.+.+|++.|+++.++.+....+|..++|.+.+.+.+..++++.+++
T Consensus 107 ----~~~~~~l~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~ 181 (417)
T PRK10489 107 ----EPSLLAIYLLGLWDGFFGSLG-VTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGL 181 (417)
T ss_pred ----CCcHHHHHHHHHHHHHHHHHH-HHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHH
Confidence 112222222333333333322 233347788999999999999999999999999999999999998899888887
Q ss_pred HHHHHHHHHHHhheeccc
Q psy11547 510 YGCISLLGTIFFYVYLPE 527 (587)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~ 527 (587)
.++..++..+. .+..|+
T Consensus 182 ~~~~~~~~~~~-~~~l~~ 198 (417)
T PRK10489 182 AAAGTFITLLP-LLRLPA 198 (417)
T ss_pred HHHHHHHHHHH-HHhCCC
Confidence 76666555443 334444
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.17 E-value=3.9e-10 Score=111.80 Aligned_cols=160 Identities=14% Similarity=0.042 Sum_probs=114.2
Q ss_pred hhHhcHHHHHHhcCCC-cchHHHHHHHHHHHHHHHHhHHHhhcccCCchhhHhhhHHHHHHHHHHHHHHHhccCCCCCCC
Q psy11547 353 PVTFYAVNIFKDAGAH-VNNNLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYK 431 (587)
Q Consensus 353 ~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (587)
.+....|.+.++.+.+ .+.+.....+.++..++.+..|++.||+|||+++.........+.+ ... .
T Consensus 9 ~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~-~~~--~---------- 75 (368)
T TIGR00903 9 TFSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAG-RLL--D---------- 75 (368)
T ss_pred HHHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHH-HHH--H----------
Confidence 3555677888888888 5557778888889999999999999999998876544433333221 111 0
Q ss_pred cCccchhHHHHHHHHHHHHHhccccccceeeeeccCCCCchhhHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhHHHHHH
Q psy11547 432 FPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLTKEGTFLMYG 511 (587)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~ 511 (587)
..+.+..++.-++.+.+.. .. +......+|.+|++.|+++.++.+....+|..+++.+.+.+.+..||+..|++.+
T Consensus 76 --~~~~~~l~~~R~l~G~g~~-~~-~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~ 151 (368)
T TIGR00903 76 --PFNYEWLLACQLLAALGQP-FL-LNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIA 151 (368)
T ss_pred --hccHHHHHHHHHHHHhHhH-HH-HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHH
Confidence 0122233333333333332 22 2233556899999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHhheecccCC
Q psy11547 512 CISLLGTIFFYVYLPETK 529 (587)
Q Consensus 512 ~~~~~~~~~~~~~~~~~~ 529 (587)
++.++..++.++.+||.+
T Consensus 152 ~l~~~~~~~~~~~lp~~p 169 (368)
T TIGR00903 152 AVAAAGIILVLAALPALP 169 (368)
T ss_pred HHHHHHHHHHHHHcCCCC
Confidence 888777777666777643
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.1e-09 Score=112.73 Aligned_cols=162 Identities=12% Similarity=0.087 Sum_probs=110.9
Q ss_pred HHHHHHHHHHHhccchhhHhcHHHHHH-hcCCC-cchHHHHHHHHHHHHHHHHhHHHhhcc-cCCchhhHhhhHHHHHHH
Q psy11547 337 VILMLYFLIYQFSGVNPVTFYAVNIFK-DAGAH-VNNNLAAVIMGIVRLIFTIASCIMMKK-MGRRSLTFISSIGCGVSM 413 (587)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~-~~~~~~~~~~~~~~~i~~~~~g~l~d~-~g~~~~~~~~~~~~~~~~ 413 (587)
..++...+...+ +++.+..+++.++. +.|.+ .+.......+.....+..+++|+++|| +|||+++.++.++.+++.
T Consensus 17 ~~~~~~~~~er~-~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~ 95 (489)
T PRK10207 17 FMIFFVELWERF-GYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGY 95 (489)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHH
Confidence 333333333333 34445555555554 47777 444555556666667777899999999 999999999999999988
Q ss_pred HHHHHHHHhccCCCCCCCcCccchhHHHHHHHHHHHHHhccccccceeeeeccCCCCc--hhhHHHHHHHHHHHHHHHHH
Q psy11547 414 TGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKV--RGIVGGLTTCACHFFIFLTV 491 (587)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--r~~~~g~~~~~~~~g~~i~~ 491 (587)
+.+.+.. .......+...+. +.......|...+++.|.+|++. |+.+.++.....++|.+++|
T Consensus 96 ~~~~~~~--------------~~~~ll~~~~~l~-~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~ 160 (489)
T PRK10207 96 FMTGMSL--------------LKPDLIFIALGTI-AVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISL 160 (489)
T ss_pred HHHHHhc--------------cchhHHHHHHHHH-HhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHH
Confidence 7776511 1111222223333 33333344555688999998874 47789999999999999999
Q ss_pred HhhHHHHHhhhhhhHHHHHHHHH
Q psy11547 492 KSYNMFQTHLTKEGTFLMYGCIS 514 (587)
Q Consensus 492 ~~~g~l~~~~g~~~~~~~~~~~~ 514 (587)
.+.|.+.++.||++.|++.++..
T Consensus 161 ~l~g~l~~~~gw~~~F~i~~i~~ 183 (489)
T PRK10207 161 SLAPVIADKFGYSVTYNLCGAGL 183 (489)
T ss_pred HHHHHHHHhhChHHHHHHHHHHH
Confidence 99999999999999998765433
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=7.1e-10 Score=115.20 Aligned_cols=159 Identities=14% Similarity=0.047 Sum_probs=115.5
Q ss_pred HHHHHhhhcCCCCCccCcchhHHHHHHHHHHHHHHHHhHHHhhhccchhHHHHHhhHHHHHHHHHHHhcCCCCCCcchhh
Q psy11547 110 AAATSQLISRDSPYRITSDESTWIASLSAIGTMVGCVLGGYMMDLVGRKMTLIITEVPTILGWALIALAPSLPSSILPWI 189 (587)
Q Consensus 110 ~~~~~~~~~~~~~~~~s~~~~g~i~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~l 189 (587)
....|.+..+ .|.+....++......++..++.+++|+++||+|||++++.+.++.+++.++.+....... .....
T Consensus 291 ~~~~p~i~~~---~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~-~~~~~ 366 (479)
T PRK10077 291 LYYAPEIFKT---LGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQA-PGIVA 366 (479)
T ss_pred HHHHHHHHHH---cCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCc-ccHHH
Confidence 3445776664 7888777778878888899999999999999999999999999999998887765421110 00022
Q ss_pred HHhhhhhhccccc-cccccceeeeeccCCCcchhHhHHHHHHHHHHHHHHHHhhhh----------hhHHHHHHHHHHHH
Q psy11547 190 FTGRILTGLGSGM-VGAPSRIYTAECSQPHLRGMLSSLASFGVSLGVLFEYSLGAF----------LSWDTVAAISTIIP 258 (587)
Q Consensus 190 ~~~r~l~G~~~g~-~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~----------l~wr~~f~~~~~~~ 258 (587)
..+-++.+++.+. ..+...+++.|.+|+++|++++++......+|.++++.+... .+|++.|++.++++
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (479)
T PRK10077 367 LLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMG 446 (479)
T ss_pred HHHHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHH
Confidence 2334444444433 336778899999999999999999999888888887544432 27888898888877
Q ss_pred HHHHHHhcc-cCCCc
Q psy11547 259 VLSIIAGCL-MPESP 272 (587)
Q Consensus 259 ~~~~~~~~~-~~esp 272 (587)
++..++.++ .||+.
T Consensus 447 ~~~~~~~~~~~~e~~ 461 (479)
T PRK10077 447 VLAALFMWKFVPETK 461 (479)
T ss_pred HHHHHHHHhccccCC
Confidence 777666654 67764
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.16 E-value=7.2e-11 Score=121.05 Aligned_cols=147 Identities=16% Similarity=0.067 Sum_probs=120.4
Q ss_pred HHHHHhhhcCCCCCccCcchhHHHHHHHHHHHHHHHHhHHHhhhcc--chhHHHH--HhhHHHHHHHHHHHhcCCCCCCc
Q psy11547 110 AAATSQLISRDSPYRITSDESTWIASLSAIGTMVGCVLGGYMMDLV--GRKMTLI--ITEVPTILGWALIALAPSLPSSI 185 (587)
Q Consensus 110 ~~~~~~~~~~~~~~~~s~~~~g~i~s~~~l~~~i~~~~~g~l~dr~--Grr~~l~--~~~~~~~i~~~~~~~~~~~~~~~ 185 (587)
...+|.+..+ +|.+..+.+++.++..++..++.++.|+++||. ++|+... .+.++.+++.+++.+.++++
T Consensus 261 ~~~l~~~~~~---~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~--- 334 (455)
T TIGR00892 261 IIFLVPYAKD---KGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAGDYT--- 334 (455)
T ss_pred HHHHHHHHHH---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhchHH---
Confidence 3455555553 788999999999999999999999999999984 3443333 33444455556667778877
Q ss_pred chhhHHhhhhhhccccccccccceeeeeccCCCcchhHhHHHHHHHHHHHHHHHHhhhhh-----hHHHHHHHHHHHHHH
Q psy11547 186 LPWIFTGRILTGLGSGMVGAPSRIYTAECSQPHLRGMLSSLASFGVSLGVLFEYSLGAFL-----SWDTVAAISTIIPVL 260 (587)
Q Consensus 186 ~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l-----~wr~~f~~~~~~~~~ 260 (587)
.+++.+++.|++.+...+...+++.|.+|++++++.+++++....+|.++||.+++.+ +|++.|++.+++.++
T Consensus 335 --~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li 412 (455)
T TIGR00892 335 --GLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVS 412 (455)
T ss_pred --HHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHH
Confidence 8888999999999999999999999999999999999999999999999999999977 599999998887766
Q ss_pred HHHH
Q psy11547 261 SIIA 264 (587)
Q Consensus 261 ~~~~ 264 (587)
..+.
T Consensus 413 ~~~~ 416 (455)
T TIGR00892 413 AGLF 416 (455)
T ss_pred HHHH
Confidence 5543
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.7e-09 Score=109.17 Aligned_cols=154 Identities=12% Similarity=0.017 Sum_probs=114.1
Q ss_pred chhhHhcHHHHHHhcCCC-cchHHHHHHHHHHHHHHHHhHHHhhcccCCchhhHhhhHHHHHHHHHHHHHHHhccCCCCC
Q psy11547 351 VNPVTFYAVNIFKDAGAH-VNNNLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPE 429 (587)
Q Consensus 351 ~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (587)
........|.+.++.+.+ .+.+.......++..++.++.|++.||+|||+.+..+.++.+++.++..+
T Consensus 23 ~~~~g~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~l~~~----------- 91 (394)
T PRK03699 23 VIVTGMVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMILAVAGLMF----------- 91 (394)
T ss_pred HHHHhhhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH-----------
Confidence 444566677888888888 55677777888899999999999999999999998888887777776655
Q ss_pred CCcCccchhHHHHHHHHHHHHHhccccccceeeeeccCCCCchhhHHHHHHHHHHHHHHHHHHhhHHHHH-hhhhhhHHH
Q psy11547 430 YKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQT-HLTKEGTFL 508 (587)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~-~~g~~~~~~ 508 (587)
.++.+...+...+.+.+.+.. .+....++.|.+|++.|+.+.+..+....+++.++|.+.+.+.+ ..+|++.|.
T Consensus 92 ----~~~~~~~~~~~~l~G~~~g~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~ 166 (394)
T PRK03699 92 ----SHSLALFSIAMFVLGVVSGIT-MSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYA 166 (394)
T ss_pred ----cchHHHHHHHHHHHHHhhHhh-ccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 122333333333334333333 33445778899999999999999888888999999999888765 468999998
Q ss_pred HHHHHHHHHHHH
Q psy11547 509 MYGCISLLGTIF 520 (587)
Q Consensus 509 ~~~~~~~~~~~~ 520 (587)
+.+++.++..++
T Consensus 167 ~~~~~~~~~~~~ 178 (394)
T PRK03699 167 CIGLVYVAIFIL 178 (394)
T ss_pred HHHHHHHHHHHH
Confidence 877766665443
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.3e-10 Score=114.84 Aligned_cols=147 Identities=13% Similarity=0.111 Sum_probs=120.8
Q ss_pred HHHHhhhcCCCCCccCcchhHHHHHHHHHHHHHHHHhHHHhhhccchhHHHHHhhHHHHHHHHHHHhcCCCCCCcchhhH
Q psy11547 111 AATSQLISRDSPYRITSDESTWIASLSAIGTMVGCVLGGYMMDLVGRKMTLIITEVPTILGWALIALAPSLPSSILPWIF 190 (587)
Q Consensus 111 ~~~~~~~~~~~~~~~s~~~~g~i~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~l~ 190 (587)
..+|.+.++ .|.+..+.+++.+.+.++..+++++.|++.||+|+|+++..+.++..++.+... . .. ...
T Consensus 221 ~~lp~~~~~---~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~--~-~~-----~~~ 289 (381)
T PRK03633 221 GLMPLYLNH---QGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML--S-QA-----AMA 289 (381)
T ss_pred HHHHHHHHH---cCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh--h-hH-----HHH
Confidence 345666654 688888999999999999999999999999999999999988888877665443 2 23 445
Q ss_pred HhhhhhhccccccccccceeeeeccCCCcchhHhHHHHHHHHHHHHHHHHhhhhh----hHHHHHHHHHHHHHHHHHHhc
Q psy11547 191 TGRILTGLGSGMVGAPSRIYTAECSQPHLRGMLSSLASFGVSLGVLFEYSLGAFL----SWDTVAAISTIIPVLSIIAGC 266 (587)
Q Consensus 191 ~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l----~wr~~f~~~~~~~~~~~~~~~ 266 (587)
...++.|++.+...|...+++.|..|+++++...+.+....++|.++||.+++++ +|++.|.+.+.+.++..+..+
T Consensus 290 ~~~~l~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~ 369 (381)
T PRK03633 290 PALFILGAAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASVSFIYLLMLL 369 (381)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHH
Confidence 6778888877778899999899999988888888888888999999999999988 899999998888876665554
Q ss_pred cc
Q psy11547 267 LM 268 (587)
Q Consensus 267 ~~ 268 (587)
..
T Consensus 370 ~~ 371 (381)
T PRK03633 370 RK 371 (381)
T ss_pred hc
Confidence 43
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.3e-09 Score=110.49 Aligned_cols=150 Identities=10% Similarity=-0.027 Sum_probs=109.7
Q ss_pred HHHHHHhcCCC-cchHHHHHHHHHHHHHHHHhHHHhhcccCCchhhHhhhHHHHHHHHHHHHHHHhccCCCCCCCcCccc
Q psy11547 358 AVNIFKDAGAH-VNNNLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFV 436 (587)
Q Consensus 358 ~~~~~~~~g~~-~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (587)
.+.+.++.+.+ .+.+....+..++..++.++.|+++||+|||+.+..+.++..++.++... ..+
T Consensus 29 ~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~---------------~~~ 93 (401)
T PRK11043 29 FKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLW---------------VES 93 (401)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHH---------------hcC
Confidence 34456677777 56677888888999999999999999999999998888777776666554 122
Q ss_pred hhHHHHHHHHHHHHHhccccccceeeeeccCCCCchhhHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhHHHHHHHHHHH
Q psy11547 437 SYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLTKEGTFLMYGCISLL 516 (587)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~ 516 (587)
.+...+...+.+.+.... .+...+++.|.+|++.++...+..+....++..++|.+.+.+.+..||+..|++.+++.++
T Consensus 94 ~~~l~~~~~l~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~ 172 (401)
T PRK11043 94 AAQLLVLRFVQAVGVCSA-AVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLL 172 (401)
T ss_pred HHHHHHHHHHHHhhhHHH-HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 233333333332222222 2233367789999998888999988888999999999999999999999999888777776
Q ss_pred HHHHhhe
Q psy11547 517 GTIFFYV 523 (587)
Q Consensus 517 ~~~~~~~ 523 (587)
..+..+.
T Consensus 173 ~~~~~~~ 179 (401)
T PRK11043 173 LILPTLR 179 (401)
T ss_pred HHHHHHH
Confidence 6554433
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.5e-10 Score=114.61 Aligned_cols=145 Identities=12% Similarity=0.152 Sum_probs=126.2
Q ss_pred HHHHhhhcCCCCCccCcchhHHHHHHHHHHHHHHHHhHHHhhhccchhHHHHHhhHHHHHHHHHHHhcCCCCCCcchhhH
Q psy11547 111 AATSQLISRDSPYRITSDESTWIASLSAIGTMVGCVLGGYMMDLVGRKMTLIITEVPTILGWALIALAPSLPSSILPWIF 190 (587)
Q Consensus 111 ~~~~~~~~~~~~~~~s~~~~g~i~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~l~ 190 (587)
...|.+.++ .|.+..+.|++.+...++..++.++.+++.||+|+|+.+.++.++.++..++.+++++.+ .++
T Consensus 226 ~~~~~~l~~---~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~-----~~~ 297 (382)
T TIGR00902 226 GFSAIYWQA---AGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAFP-----LIF 297 (382)
T ss_pred HHHHHHHHH---CCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhHH-----HHH
Confidence 344555553 899999999999999999999999999999999999999999999999999999999988 899
Q ss_pred HhhhhhhccccccccccceeeeeccCCCcchhHhHHHH-HHHHHHHHHHHHhhhhh----hHHHHHHHHHHHHHHHHHHh
Q psy11547 191 TGRILTGLGSGMVGAPSRIYTAECSQPHLRGMLSSLAS-FGVSLGVLFEYSLGAFL----SWDTVAAISTIIPVLSIIAG 265 (587)
Q Consensus 191 ~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~-~~~~~G~~i~~~l~~~l----~wr~~f~~~~~~~~~~~~~~ 265 (587)
+.++++|++.|...+....++.+. |+++|++..++++ ...++|.++++.+++++ ++ ..|++.++++++.+++.
T Consensus 298 ~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~~~~ 375 (382)
T TIGR00902 298 LLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAFFLI 375 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHHH
Confidence 999999999999999999999988 8889999999986 57789999999999988 64 55777777776655443
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >KOG3098|consensus | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.1e-08 Score=101.07 Aligned_cols=106 Identities=12% Similarity=0.063 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHHHhHHHhhhccchhHHHHHhhHHHHHHHHHHHhcCCCCCCcchhhHHhhhhhhccccccccccceeeee
Q psy11547 134 ASLSAIGTMVGCVLGGYMMDLVGRKMTLIITEVPTILGWALIALAPSLPSSILPWIFTGRILTGLGSGMVGAPSRIYTAE 213 (587)
Q Consensus 134 ~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e 213 (587)
.++-.....+++++++.+.|+.|.|..|.++...+....+..-+-+.+ .++++-.+.|+|.+..+..--.|+.|
T Consensus 56 ~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~~N~y------~~yfssallG~Gaallw~GqG~ylt~ 129 (461)
T KOG3098|consen 56 QAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLFPNSY------YLYFSSALLGFGAALLWTGQGGYLTS 129 (461)
T ss_pred HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHhcchH------HHHHHHHHhhhhHHheecccceehhh
Confidence 777888889999999999999999999999999998888777766654 68899999999999999999999999
Q ss_pred ccCCCcchhHhHHHHHHHHHHHHHHHHhhhhh
Q psy11547 214 CSQPHLRGMLSSLASFGVSLGVLFEYSLGAFL 245 (587)
Q Consensus 214 ~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l 245 (587)
..+++.+.+..++.......+.++|..+-..+
T Consensus 130 ~st~~tie~Nisi~Wai~~~~li~Ggi~l~~~ 161 (461)
T KOG3098|consen 130 NSTRETIERNISIFWAIGQSSLIIGGIILFIY 161 (461)
T ss_pred cCChhhHHHHHHHHHHHHHHHHHhhhHhheee
Confidence 99999999999999999999988887665544
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.13 E-value=9.3e-10 Score=110.01 Aligned_cols=162 Identities=16% Similarity=0.100 Sum_probs=112.2
Q ss_pred cchhhHhcHHH-HHHhcCCC-cchHHHHHHHHHHHHHHHHhHHHhhcccCCchhhHhhhHHHHHHHHHHHHHHHhccCCC
Q psy11547 350 GVNPVTFYAVN-IFKDAGAH-VNNNLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFW 427 (587)
Q Consensus 350 ~~~~~~~~~~~-~~~~~g~~-~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (587)
.......+.|. +.++.|.+ .+.++......++..++.++.|++.||+|||+.+.++.++..++.+++.+..
T Consensus 16 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~------- 88 (366)
T TIGR00886 16 VWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAV------- 88 (366)
T ss_pred HHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHh-------
Confidence 34556666774 66678888 5567888888999999999999999999999999999888888877766521
Q ss_pred CCCCcCccchhHHHHHHHHHHHHHhccccccceeeeeccCCCCchhhHHHHHHHHHHHHHHHHHHhhHHHHHh-------
Q psy11547 428 PEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTH------- 500 (587)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~------- 500 (587)
.+.+...+..++.+.+ .... +....++.+.+|++.|+.+.++......+|..+++.+.+.+...
T Consensus 89 -------~~~~~~~~~~~~~g~~-~~~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~ 159 (366)
T TIGR00886 89 -------QSYSVLLLLRLFIGIA-GGSF-ASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGL 159 (366)
T ss_pred -------hhHHHHHHHHHHHHHh-chhh-HhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccc
Confidence 0223333333333332 2223 33457888999999999999999988888888888887776653
Q ss_pred ---hhhhhHH-HHHHHHHHHHHHHhheeccc
Q psy11547 501 ---LTKEGTF-LMYGCISLLGTIFFYVYLPE 527 (587)
Q Consensus 501 ---~g~~~~~-~~~~~~~~~~~~~~~~~~~~ 527 (587)
.+|++.| +..+++..+..++.+...++
T Consensus 160 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (366)
T TIGR00886 160 PAHLAWGWAFVIVPAGILLLPALLIFFVGAD 190 (366)
T ss_pred cccccccchhHHHHHHHHHHHHHHHHHhccc
Confidence 3788888 43344444444444444444
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.8e-10 Score=114.98 Aligned_cols=144 Identities=21% Similarity=0.211 Sum_probs=111.8
Q ss_pred cHHHHHhhhcCCCCCccCcchhHHHHHHHHHHHHHHHHhHHHhhhccchhHHHHHhhHHHHHHH--HHHHhc--CCCCCC
Q psy11547 109 SAAATSQLISRDSPYRITSDESTWIASLSAIGTMVGCVLGGYMMDLVGRKMTLIITEVPTILGW--ALIALA--PSLPSS 184 (587)
Q Consensus 109 ~~~~~~~~~~~~~~~~~s~~~~g~i~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~--~~~~~~--~~~~~~ 184 (587)
....+|.+..+ +++.+..+.+++.+...++..++.++.|+++||+|||+.+..+..+..+.. ++..+. ++.+
T Consensus 238 ~~~~~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 313 (394)
T TIGR00883 238 ITTYLPTYLTQ--TLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFT-- 313 (394)
T ss_pred HHHHHHHHHHH--hcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCCchH--
Confidence 34556666533 478889999999999999999999999999999999998876555444433 222222 3444
Q ss_pred cchhhHHhhhhhhccccccccccceeeeeccCCCcchhHhHH-HHHHHHHHHHHHHHhhhhh----h-HHHHHHHHHHHH
Q psy11547 185 ILPWIFTGRILTGLGSGMVGAPSRIYTAECSQPHLRGMLSSL-ASFGVSLGVLFEYSLGAFL----S-WDTVAAISTIIP 258 (587)
Q Consensus 185 ~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~-~~~~~~~G~~i~~~l~~~l----~-wr~~f~~~~~~~ 258 (587)
.+++..++.|++.+...+...+++.|.+|+++|+++.++ ...+..+|..++|.+++.+ + |++.++...+..
T Consensus 314 ---~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~~~ 390 (394)
T TIGR00883 314 ---LFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAALA 390 (394)
T ss_pred ---HHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHHHH
Confidence 667788999998888999999999999999999999998 4566678888999988887 5 888777766555
Q ss_pred H
Q psy11547 259 V 259 (587)
Q Consensus 259 ~ 259 (587)
+
T Consensus 391 l 391 (394)
T TIGR00883 391 L 391 (394)
T ss_pred H
Confidence 4
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=4.8e-09 Score=105.06 Aligned_cols=180 Identities=11% Similarity=0.056 Sum_probs=114.9
Q ss_pred HHHHHHHHHHHHhccchhhHhcHHHHHH-hcCCC-cchHHHHHHHHHHHHHHHHhHHHhhcccCCchhhHhhhHHHHHHH
Q psy11547 336 FVILMLYFLIYQFSGVNPVTFYAVNIFK-DAGAH-VNNNLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSM 413 (587)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~-~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~~~~~~~~~~~~~~~~ 413 (587)
.+....+.+...+..........+.+-+ +.+++ .+.+....+..+...++++..|++.||+|.|+++.++.++..+..
T Consensus 35 ~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~ 114 (462)
T PRK15034 35 NLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPC 114 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHH
Confidence 3444444444444434444444444444 57777 556677777888888999999999999999999999888888777
Q ss_pred HHHHHHHHhccCCCCCCCcCccchhHHHHHHHHHHHHHhccccccceeeeeccCCCCchhhHHHHHHHHHHHHHHHHHHh
Q psy11547 414 TGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKS 493 (587)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~~~~ 493 (587)
+.+.+.... . ..+.+..++...+.+.+ +.. .+.....+++.+|++.||++.|+....+++|..+++.+
T Consensus 115 ~~~~~a~~~---~-------~~s~~~lli~r~l~Gig-g~~-f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l 182 (462)
T PRK15034 115 VWLGIAVQN---P-------NTPFGIFIVIALLCGFA-GAN-FASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLV 182 (462)
T ss_pred HHHHHHHcc---c-------CCCHHHHHHHHHHHHHH-HHh-HHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHH
Confidence 766652211 0 11233333333333333 333 34445788999999999999999987777877776666
Q ss_pred hHHHH-----H-------------hhhhhhHHHHHHHHHHHHHHHhheeccc
Q psy11547 494 YNMFQ-----T-------------HLTKEGTFLMYGCISLLGTIFFYVYLPE 527 (587)
Q Consensus 494 ~g~l~-----~-------------~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 527 (587)
.+.+. + ..+++.+.++...+.++..++.+++.++
T Consensus 183 ~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~ 234 (462)
T PRK15034 183 APLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMND 234 (462)
T ss_pred HHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 65533 2 2335556666666666666665555444
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.12 E-value=8e-10 Score=111.76 Aligned_cols=162 Identities=11% Similarity=-0.022 Sum_probs=106.9
Q ss_pred hhHhcHHHHHHhcCCC-cchHHHHHHHHHHHHHHHHhHHHhhcccCCchhhHhhhHHHHHHHHHHHHHHHhccCCCCCCC
Q psy11547 353 PVTFYAVNIFKDAGAH-VNNNLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYK 431 (587)
Q Consensus 353 ~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (587)
....+.+.+.++.|.+ .+.+.......++..++.++.|++.||+|||+.+..+..+.+++.+++......
T Consensus 31 ~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~--------- 101 (402)
T TIGR00897 31 LEQGWLSPFLKALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLG--------- 101 (402)
T ss_pred hHHHhHHHHHHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhcc---------
Confidence 3444666777888888 567788888999999999999999999999999999888887776544321111
Q ss_pred cCccchhHHHHHHHHHHHHHhccccccceeeeeccCCCCchhhHHHHHHHHHHHHH-HHHHHhhHHHHHhhhhhhHHHHH
Q psy11547 432 FPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFI-FLTVKSYNMFQTHLTKEGTFLMY 510 (587)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~-~i~~~~~g~l~~~~g~~~~~~~~ 510 (587)
..+.+..+....+.+.+... ..+.....+.+.+|++.|+++.|+.++...+|. .++|.+.+.+.+..|+...++..
T Consensus 102 --~~~~~~l~~~~~i~G~g~~~-~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~ 178 (402)
T TIGR00897 102 --HANYPLILLFYGIRGLGYPL-FAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSA 178 (402)
T ss_pred --CccHHHHHHHHHHHHcchHH-HHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHH
Confidence 01222222222222222222 222223566788899999999999999999986 57888888888888866555544
Q ss_pred HHHHHHHHHHhheecc
Q psy11547 511 GCISLLGTIFFYVYLP 526 (587)
Q Consensus 511 ~~~~~~~~~~~~~~~~ 526 (587)
..+..+..++..++.+
T Consensus 179 ~~~~~~~~~~~~~~~~ 194 (402)
T TIGR00897 179 LAFVLTGGVIALFSNK 194 (402)
T ss_pred HHHHHHHHHHHHhccC
Confidence 4333333333333333
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=8.2e-10 Score=111.21 Aligned_cols=153 Identities=16% Similarity=0.111 Sum_probs=118.5
Q ss_pred HHHHhhhcCCCCCccCcchhHHHHHHHHHHHHHHHHhHHHhhhccchhHHHHHhhHHHHHHHHHHHhcCCCCCCcchhhH
Q psy11547 111 AATSQLISRDSPYRITSDESTWIASLSAIGTMVGCVLGGYMMDLVGRKMTLIITEVPTILGWALIALAPSLPSSILPWIF 190 (587)
Q Consensus 111 ~~~~~~~~~~~~~~~s~~~~g~i~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~l~ 190 (587)
..+|.+..+ .|.+..+.|.+.+.+.++..++.++.|++.||+|||+.+..+..+..++.++....+... ..
T Consensus 226 ~~lp~~l~~---~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~-----~~- 296 (393)
T PRK09705 226 AWLPAFYIE---IGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQL-----PV- 296 (393)
T ss_pred HHHHHHHHH---cCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccchH-----HH-
Confidence 445666554 788999999999999999999999999999999999999998888777776655444322 11
Q ss_pred HhhhhhhccccccccccceeeeeccC-CCcchhHhHHHHHHHHHHHHHHHHhhhhh-----hHHHHHHHHHHHHHHHHHH
Q psy11547 191 TGRILTGLGSGMVGAPSRIYTAECSQ-PHLRGMLSSLASFGVSLGVLFEYSLGAFL-----SWDTVAAISTIIPVLSIIA 264 (587)
Q Consensus 191 ~~r~l~G~~~g~~~~~~~~~i~e~~~-~~~r~~~~~~~~~~~~~G~~i~~~l~~~l-----~wr~~f~~~~~~~~~~~~~ 264 (587)
+.-++.|++.+...+.......+..+ +++|++..++.+....++..++|.+.+++ +|...|++.++.+++..+.
T Consensus 297 ~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~ 376 (393)
T PRK09705 297 LWAMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMII 376 (393)
T ss_pred HHHHHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHH
Confidence 22346688888887877766667664 56789999999999999999999999988 4788888877777766555
Q ss_pred hc-ccCCCc
Q psy11547 265 GC-LMPESP 272 (587)
Q Consensus 265 ~~-~~~esp 272 (587)
.. +.||++
T Consensus 377 ~~~~~~~~~ 385 (393)
T PRK09705 377 TLRFAPARF 385 (393)
T ss_pred HHHhccccc
Confidence 44 467764
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=1e-09 Score=114.58 Aligned_cols=147 Identities=14% Similarity=0.090 Sum_probs=111.3
Q ss_pred cchhhHhcHHHHHHhcCCC-cchHHHHHHHHHHHHHHHHhHHHhhcccCCchhhHhhhHHHHHHHHHHHHHHHhccCCCC
Q psy11547 350 GVNPVTFYAVNIFKDAGAH-VNNNLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWP 428 (587)
Q Consensus 350 ~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (587)
.........|.+.++.|.+ .+.+.......++..++.++.|++.||+|||+.+..+.++.+++.+++.+.
T Consensus 35 ~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~--------- 105 (496)
T PRK03893 35 DFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVGTLACGFA--------- 105 (496)
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHH---------
Confidence 3445556667777888887 455677777888899999999999999999999998888888877776651
Q ss_pred CCCcCccchhHHHHHHHHHHHHHhccccccceeeeeccCCCCchhhHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhHHH
Q psy11547 429 EYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLTKEGTFL 508 (587)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~ 508 (587)
.+.+...+...+.+. ...+..+....++.|.+|++.|+.+.++......+|..+++.+.+.+.+..+|++.|.
T Consensus 106 ------~~~~~l~~~~~l~G~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~ 178 (496)
T PRK03893 106 ------PGYWTLFIARLVIGM-GMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFF 178 (496)
T ss_pred ------hHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHH
Confidence 122333333333333 2233334445788999999999999999999999999999999999999999998887
Q ss_pred HHHH
Q psy11547 509 MYGC 512 (587)
Q Consensus 509 ~~~~ 512 (587)
+.++
T Consensus 179 ~~~~ 182 (496)
T PRK03893 179 IGIL 182 (496)
T ss_pred HHHH
Confidence 6433
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=6e-10 Score=113.84 Aligned_cols=146 Identities=18% Similarity=0.112 Sum_probs=108.8
Q ss_pred CCccCcchhHHHHHHHHHHHHHHHHhHHHhhhccchhHHHHHhhHHHHHHHHHHHh---cCCCCCCcchhhHHhhhhhhc
Q psy11547 122 PYRITSDESTWIASLSAIGTMVGCVLGGYMMDLVGRKMTLIITEVPTILGWALIAL---APSLPSSILPWIFTGRILTGL 198 (587)
Q Consensus 122 ~~~~s~~~~g~i~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~---~~~~~~~~~~~l~~~r~l~G~ 198 (587)
.+|.+......+.....+...++.+++|+++||+|||++++.+.++..++.+.... ..+.. +.+++..++.|+
T Consensus 280 ~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~ 355 (438)
T PRK09952 280 NLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIF----WIVFFSIMLANI 355 (438)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChH----HHHHHHHHHHHH
Confidence 37777776666666677777888999999999999999998887766655443332 12222 134456677788
Q ss_pred cccccccccceeeeeccCCCcchhHhHHHH-HHHHHHHHHHHHhhhhh------hHHHHHHHHHHHHHHHHHHhcccCCC
Q psy11547 199 GSGMVGAPSRIYTAECSQPHLRGMLSSLAS-FGVSLGVLFEYSLGAFL------SWDTVAAISTIIPVLSIIAGCLMPES 271 (587)
Q Consensus 199 ~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~-~~~~~G~~i~~~l~~~l------~wr~~f~~~~~~~~~~~~~~~~~~es 271 (587)
+.+...+...+++.|.+|.+.|+...++.. .+..+|..++|.+.+++ +|+..+...++..++..+..+.++|+
T Consensus 356 ~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~ 435 (438)
T PRK09952 356 AHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALLMKDN 435 (438)
T ss_pred HHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcccc
Confidence 888878888899999999999988888854 44558888999888877 48888888888877777666666664
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.09 E-value=5.6e-10 Score=115.19 Aligned_cols=164 Identities=11% Similarity=-0.004 Sum_probs=116.8
Q ss_pred hhhHhcHHHHHHhcCCC-cchHHHHHHHHHHHHHHHHhHHHhhcccCCchhhHhhhHHHHHHHHHHHHHHHhccCCCCCC
Q psy11547 352 NPVTFYAVNIFKDAGAH-VNNNLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEY 430 (587)
Q Consensus 352 ~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (587)
..+....|.+.++.+.+ .+.++..+.+.++..++.++.|+++||+|+|+++..+.++.+++.+.++......
T Consensus 46 ~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~------- 118 (467)
T PRK09556 46 KNFKAAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAICMLGFGASLGSG------- 118 (467)
T ss_pred cChhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHHHHHHHHHHHHHhcc-------
Confidence 33445567788888887 5667888888899999999999999999999999888888777776666532220
Q ss_pred CcCccchhHHHHHHHHHHHHHhccccccceeeeeccCCCCchhhHHHHHHHHHHHHHHHHHHhhHHHHHhh---hhhhHH
Q psy11547 431 KFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHL---TKEGTF 507 (587)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~~---g~~~~~ 507 (587)
..+.+..++.-.+.+.+.+.+ .+....++.|.+|++.|+.+.|+......+|.++++.+...+.+.. +|+..|
T Consensus 119 ---~~~~~~l~~~r~l~G~~~~~~-~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f 194 (467)
T PRK09556 119 ---SVSLGLMIALWALSGFFQSTG-GPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVIGMF 194 (467)
T ss_pred ---cchHHHHHHHHHHHHHHHhcc-chHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHhhccCcchhHH
Confidence 112233333333333333333 4555588999999999999999999999999999998887766653 477777
Q ss_pred HHHHHHHHHHHHHhheecc
Q psy11547 508 LMYGCISLLGTIFFYVYLP 526 (587)
Q Consensus 508 ~~~~~~~~~~~~~~~~~~~ 526 (587)
.+.+++.++..++.+++.+
T Consensus 195 ~~~g~~~~~~~i~~~~~~~ 213 (467)
T PRK09556 195 IFPSIIALIIGFIGLRYGS 213 (467)
T ss_pred HHHHHHHHHHHHHHHHhCC
Confidence 7767666665555444443
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.09 E-value=6.5e-10 Score=114.87 Aligned_cols=149 Identities=11% Similarity=0.010 Sum_probs=110.3
Q ss_pred cCCC-cchHHHHHHHHHHHHHHHHhHHHhhcccCCchhhHhhhHHHHHHHHHHHHHHHhccCCCCCCCcCccchhHHHHH
Q psy11547 365 AGAH-VNNNLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLM 443 (587)
Q Consensus 365 ~g~~-~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (587)
.+.+ ...+.....+.++.+++.++.|++.||+|+|+.+..+.++..++.++...... .....++.
T Consensus 71 ~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~--------------~~~~~l~~ 136 (465)
T TIGR00894 71 FKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAG--------------GGIALVVF 136 (465)
T ss_pred CCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHH--------------cCchHHHH
Confidence 3444 34466777788899999999999999999999999888877777665543111 11222333
Q ss_pred HHHHHHHHhccccccceeeeeccCCCCchhhHHHHHHHHHHHHHHHHHHhhHHHHHh-hhhhhHHHHHHHHHHHHHHHhh
Q psy11547 444 LMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTH-LTKEGTFLMYGCISLLGTIFFY 522 (587)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~-~g~~~~~~~~~~~~~~~~~~~~ 522 (587)
.-++.+.......+....++.|.+|++.|+++.|+.+....+|..+++.+.+.+.+. .||+..|++.+++.++..++.+
T Consensus 137 ~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~ 216 (465)
T TIGR00894 137 CRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWF 216 (465)
T ss_pred HHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHH
Confidence 333333444444556568999999999999999999999999999999999999988 4999999988887776665554
Q ss_pred eeccc
Q psy11547 523 VYLPE 527 (587)
Q Consensus 523 ~~~~~ 527 (587)
.+.++
T Consensus 217 ~~~~~ 221 (465)
T TIGR00894 217 VFPAD 221 (465)
T ss_pred HHhcC
Confidence 44443
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.08 E-value=9.6e-10 Score=92.92 Aligned_cols=135 Identities=19% Similarity=0.256 Sum_probs=101.1
Q ss_pred HHHHHHHHHHHhHHHhhcccCCchhhHhhhHHHHHHHHHHHHHHHhccCCCCCCCcCccchhHHHHHHHHHHHHHhcccc
Q psy11547 377 IMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYL 456 (587)
Q Consensus 377 ~~~~~~~i~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (587)
...++.+++.++.+++.||+|||+.+..+.....++.+.+.. ..+.+.......+.+.+.+ ...
T Consensus 6 ~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~g~~~~-~~~ 69 (141)
T TIGR00880 6 GYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFAL---------------SSNITVLIIARFLQGFGAA-FAL 69 (141)
T ss_pred eehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHH---------------hccHHHHHHHHHHHHHHHH-HHH
Confidence 356678889999999999999999988887777776665544 1123333333333333333 233
Q ss_pred ccceeeeeccCCCCchhhHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhHHHHHHHHHHHHHHHhheeccc
Q psy11547 457 VVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLTKEGTFLMYGCISLLGTIFFYVYLPE 527 (587)
Q Consensus 457 ~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 527 (587)
+....++.|.+|++.|+++.++.+....++..+++.+.+.+.+..+++..+.+.+.+.++..+..++..+|
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (141)
T TIGR00880 70 VAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPE 140 (141)
T ss_pred HhHHHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 45557889999999999999999999999999999999999998898888888887777776666555443
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.05 E-value=7.4e-09 Score=107.91 Aligned_cols=148 Identities=14% Similarity=0.017 Sum_probs=101.2
Q ss_pred hHHHHHHHHHHHHHHHHhHHHhhcccCCchhhHhhhHHHHHHHHHHHHHHHhccCCCCCCCcCccchhHHHHHHHHHHHH
Q psy11547 371 NNLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAA 450 (587)
Q Consensus 371 ~~~~~~~~~~~~~i~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (587)
.+.......++.+++.++.|++.||+|||+.+.++.++..++.++....... .. ....+..++.-++.+.+
T Consensus 58 ~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~~--~~-------~~~~~~~~~~r~l~G~~ 128 (502)
T TIGR00887 58 SAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGS--SP-------KSVMATLCFWRFWLGVG 128 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHccCc--cc-------chHHHHHHHHHHHHHHH
Confidence 3567777888899999999999999999999998888888777665542110 00 00012233333333333
Q ss_pred HhccccccceeeeeccCCCCchhhHHHHHHHHHHHHHHHHHHhhHHHHH-----------------------hhhhhhHH
Q psy11547 451 STIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQT-----------------------HLTKEGTF 507 (587)
Q Consensus 451 ~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~-----------------------~~g~~~~~ 507 (587)
.+. ..+....++.|.+|++.|+++.++.+....+|..+++.+...+.. ..+|+..+
T Consensus 129 ~g~-~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~ 207 (502)
T TIGR00887 129 IGG-DYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILI 207 (502)
T ss_pred Hhh-hhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHH
Confidence 333 345556999999999999999999999999999888887765432 13688888
Q ss_pred HHHHHHHHHHHHHhheecccCC
Q psy11547 508 LMYGCISLLGTIFFYVYLPETK 529 (587)
Q Consensus 508 ~~~~~~~~~~~~~~~~~~~~~~ 529 (587)
.+.++.+++. ++..+++||+.
T Consensus 208 ~~~~ip~~i~-~~~~~~lpESp 228 (502)
T TIGR00887 208 GFGAVPALLA-LYFRLTIPETP 228 (502)
T ss_pred HHHHHHHHHH-HHHHHhCCCCH
Confidence 6555544443 33446678863
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.04 E-value=7.4e-10 Score=113.63 Aligned_cols=149 Identities=15% Similarity=0.130 Sum_probs=130.5
Q ss_pred HHHHHhhhcCCCCCccCcchhHHHHHHHHHHHHHHHHhHHHhhhccchhHHHHHhhHHHHHHHHHHHhcCCCCCCcchhh
Q psy11547 110 AAATSQLISRDSPYRITSDESTWIASLSAIGTMVGCVLGGYMMDLVGRKMTLIITEVPTILGWALIALAPSLPSSILPWI 189 (587)
Q Consensus 110 ~~~~~~~~~~~~~~~~s~~~~g~i~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~l 189 (587)
...+|.+..+ .+|.+....|++.+++.+|..+|+++.+++.+|+++++.+..+.++++++.+..+++++.+ ..
T Consensus 238 ~aLlPl~a~~--~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~~-----~~ 310 (524)
T PF05977_consen 238 WALLPLFARD--VLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPSFW-----LA 310 (524)
T ss_pred HHhhhHHHHH--HhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchHHH-----HH
Confidence 3557777654 5888999999999999999999999999999999999999999999999999999999998 88
Q ss_pred HHhhhhhhccccccccccceeeeeccCCCcchhHhHHHHHHHHHHHHHHHHhhhhh----hHHHHHHHHHHHHHHHHHHh
Q psy11547 190 FTGRILTGLGSGMVGAPSRIYTAECSQPHLRGMLSSLASFGVSLGVLFEYSLGAFL----SWDTVAAISTIIPVLSIIAG 265 (587)
Q Consensus 190 ~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l----~wr~~f~~~~~~~~~~~~~~ 265 (587)
++.-++.|++.....+...+.+.+..|++.||++++++++....+..+|.++.+.+ |-+..+.+.++..++..++.
T Consensus 311 ~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~ 390 (524)
T PF05977_consen 311 LIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIA 390 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHH
Confidence 88999999999888888889999999999999999999999988888888888887 77888877776555544443
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.04 E-value=5.9e-09 Score=99.56 Aligned_cols=175 Identities=13% Similarity=0.115 Sum_probs=127.3
Q ss_pred HHHHHHHHHHHhccchhhHhcHHHHHHhcCCC-cchHHHHHHHHHHHHHHHHhHHHhhcccCCchhhHhhhHHHHHHHHH
Q psy11547 337 VILMLYFLIYQFSGVNPVTFYAVNIFKDAGAH-VNNNLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTG 415 (587)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~ 415 (587)
+......+...++....+....+.+-++.+++ .+..+...+..+.+.+.++..|++.||+|.|+...++.++..+-++.
T Consensus 16 L~~S~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~ 95 (417)
T COG2223 16 LWLSTLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLG 95 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHH
Confidence 33333334333333444444555555678888 56678888888999999999999999999999999999998888888
Q ss_pred HHHHHHhccCCCCCCCcCccchhHHHHHHHHHHHHHhccccccceeeeeccCCCCchhhHHHHHHHHHHHHHHHHHHhhH
Q psy11547 416 LGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYN 495 (587)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g 495 (587)
+.+.... .....++.+.++.+..+ +...+...+++..+|++.+|.+.|+.. .+++|..+...+.+
T Consensus 96 ~~~a~~~-------------~~~~~ll~~gll~G~~G-asFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P 160 (417)
T COG2223 96 LAFAVTY-------------PSTWQLLVIGLLLGLAG-ASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAP 160 (417)
T ss_pred HHHHccC-------------CchHHHHHHHHHHhccc-ceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHH
Confidence 7774333 11223333333333333 333444589999999999999999988 99999999999999
Q ss_pred HHHHhhh---hhhHHHHHHHHHHHHHHHhheecc
Q psy11547 496 MFQTHLT---KEGTFLMYGCISLLGTIFFYVYLP 526 (587)
Q Consensus 496 ~l~~~~g---~~~~~~~~~~~~~~~~~~~~~~~~ 526 (587)
.+....| |+.+..+.....++..+..++...
T Consensus 161 ~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~ 194 (417)
T COG2223 161 LVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMN 194 (417)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999988 888888887777777776666544
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.7e-09 Score=109.78 Aligned_cols=145 Identities=16% Similarity=0.096 Sum_probs=128.9
Q ss_pred CCccCcchhHHHHHHHHHHHHHHHHhHHHhhhccchh--HHHHHhhHHHHHHHHHHHh--------cCCCCCCcchhhHH
Q psy11547 122 PYRITSDESTWIASLSAIGTMVGCVLGGYMMDLVGRK--MTLIITEVPTILGWALIAL--------APSLPSSILPWIFT 191 (587)
Q Consensus 122 ~~~~s~~~~g~i~s~~~l~~~i~~~~~g~l~dr~Grr--~~l~~~~~~~~i~~~~~~~--------~~~~~~~~~~~l~~ 191 (587)
.+|++..+...+.-+..+..++|++++|++.||+|.| ++++++++++.+..+...+ ..+-+ .+.+
T Consensus 311 ~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~-----~f~~ 385 (477)
T PF11700_consen 311 VLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKSPW-----EFWV 385 (477)
T ss_pred hcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcccHH-----HHHH
Confidence 4999999999999999999999999999999999999 8999998888666655555 44555 8999
Q ss_pred hhhhhhccccccccccceeeeeccCCCcchhHhHHHHHHHHHHHHHHHHhhhhh-----hHHHHHHHHHHHHHHHHHHhc
Q psy11547 192 GRILTGLGSGMVGAPSRIYTAECSQPHLRGMLSSLASFGVSLGVLFEYSLGAFL-----SWDTVAAISTIIPVLSIIAGC 266 (587)
Q Consensus 192 ~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l-----~wr~~f~~~~~~~~~~~~~~~ 266 (587)
.-++.|+..|...+.+.++.+|+.|+++.+..+|++....-....+||++.+.+ +-|+.+....++.++.+++.+
T Consensus 386 ~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll~ 465 (477)
T PF11700_consen 386 LAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILLF 465 (477)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999888 578999988888888888777
Q ss_pred ccCCC
Q psy11547 267 LMPES 271 (587)
Q Consensus 267 ~~~es 271 (587)
+++..
T Consensus 466 ~v~~~ 470 (477)
T PF11700_consen 466 FVDVE 470 (477)
T ss_pred hccch
Confidence 66543
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.01 E-value=8.8e-09 Score=106.61 Aligned_cols=153 Identities=7% Similarity=0.000 Sum_probs=102.0
Q ss_pred chhhHhcHHHHH-HhcCCC-cchHHHHHHHHHHHHHHHHhHHHhhcc-cCCchhhHhhhHHHHHHHHHHHHHHHhccCCC
Q psy11547 351 VNPVTFYAVNIF-KDAGAH-VNNNLAAVIMGIVRLIFTIASCIMMKK-MGRRSLTFISSIGCGVSMTGLGLYIFATKDFW 427 (587)
Q Consensus 351 ~~~~~~~~~~~~-~~~g~~-~~~~~~~~~~~~~~~i~~~~~g~l~d~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (587)
++.+..+.+.++ ++.|++ .+................+++|++.|| +|||+.+..+.++.+++..++.+..
T Consensus 37 ~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~------- 109 (500)
T PRK09584 37 YYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSG------- 109 (500)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhc-------
Confidence 445556666666 557777 333444444444444555789999999 5999999999888888776665410
Q ss_pred CCCCcCccchhHHHHHHHHHHHHHhccccccceeeeeccCCCCc--hhhHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhh
Q psy11547 428 PEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKV--RGIVGGLTTCACHFFIFLTVKSYNMFQTHLTKEG 505 (587)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--r~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~ 505 (587)
...+...+...+.+.+.+ ...+...+++.|.+|++. |+.+.++.+...++|.+++|.+.|.+.+..||++
T Consensus 110 -------~~~~~l~~~~~l~gig~g-~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~ 181 (500)
T PRK09584 110 -------HDAGIVYMGMATIAVGNG-LFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSV 181 (500)
T ss_pred -------ccHHHHHHHHHHHHHhhh-cccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHH
Confidence 111222222233333333 233444578899998653 4457888899999999999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q psy11547 506 TFLMYGCISLLGT 518 (587)
Q Consensus 506 ~~~~~~~~~~~~~ 518 (587)
.|.+.++..+++.
T Consensus 182 ~F~i~~i~~~i~~ 194 (500)
T PRK09584 182 AFALSVVGMLITV 194 (500)
T ss_pred HHHHHHHHHHHHH
Confidence 9988765444443
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.4e-09 Score=103.69 Aligned_cols=172 Identities=14% Similarity=0.088 Sum_probs=145.4
Q ss_pred HHHHHHHhhhhhhccccccHHHHHhhhcCCCCCccCcchhHHHHHHHHHHHHHHHHhHHHhhhccchhHHHHHhhHHHHH
Q psy11547 91 LAVFANLGNVNTGMVFGFSAAATSQLISRDSPYRITSDESTWIASLSAIGTMVGCVLGGYMMDLVGRKMTLIITEVPTIL 170 (587)
Q Consensus 91 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~i~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i 170 (587)
..++++-..+.+|.+....... .+... ++|++..+..++.....+..++|++++|++.||+|.|+++..+++++.+
T Consensus 255 ~~FLiA~~~~~DGv~til~~~~--~fg~~--~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~ 330 (438)
T COG2270 255 VLFLIARFFYIDGVNTILAMGG--VFGAA--DLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSI 330 (438)
T ss_pred HHHHHHHHHHHhhHHHHHHHHH--HHHHH--HcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHH
Confidence 3444455566677664333222 23332 4999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCCcchhhHHhhhhhhccccccccccceeeeeccCCCcchhHhHHHHHHHHHHHHHHHHhhhhh-----
Q psy11547 171 GWALIALAPSLPSSILPWIFTGRILTGLGSGMVGAPSRIYTAECSQPHLRGMLSSLASFGVSLGVLFEYSLGAFL----- 245 (587)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l----- 245 (587)
.++...+...-. .+.++-.+.|...|+....+.++..+.+|+++-++.+|++....-.+..+||.+.+.+
T Consensus 331 ~~~~~~~~~~~~-----~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg 405 (438)
T COG2270 331 AALYLIFLEGEL-----DFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITG 405 (438)
T ss_pred HHHHHHHccccH-----HHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhc
Confidence 998888887766 7888999999999999999999999999999999999999999999999999998887
Q ss_pred hHHHHHHHHHHHHHHHHHHhcccCCC
Q psy11547 246 SWDTVAAISTIIPVLSIIAGCLMPES 271 (587)
Q Consensus 246 ~wr~~f~~~~~~~~~~~~~~~~~~es 271 (587)
+-|.-+....++.++.+++.+.+|+.
T Consensus 406 ~~r~g~~~i~vll~iGl~~L~~v~~~ 431 (438)
T COG2270 406 SSRAGVLSIIVLLLIGLLLLLRVKVP 431 (438)
T ss_pred chhhHHHHHHHHHHhhHhhEEeecCC
Confidence 67888888888888877777777664
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=5.4e-09 Score=105.18 Aligned_cols=153 Identities=12% Similarity=0.138 Sum_probs=107.7
Q ss_pred HhcHHHHHHhcCCC-cchHHHHHHHHHHHHHHHHhHHHhhcccCCchhhHhhhHHHHHHHHHHHHHHHhccCCCCCCCcC
Q psy11547 355 TFYAVNIFKDAGAH-VNNNLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFP 433 (587)
Q Consensus 355 ~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (587)
....+.+..+.+.+ ...++....+.+...+..++.|++.||+|||+++.++.++.+++.+.+...
T Consensus 23 ~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~-------------- 88 (393)
T PRK11195 23 LFAAIALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFG-------------- 88 (393)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHH--------------
Confidence 33344455666665 345677778888999999999999999999999999988887766654431
Q ss_pred ccchhHHHHHHHHHHHHHhccccccceeeeeccCCCCchhhHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhHHHHHHHH
Q psy11547 434 AFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLTKEGTFLMYGCI 513 (587)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~ 513 (587)
.. . .+.. ++.+.......|...+++.|.+|++.|+++.|+......++..+||.+.|.+.+. .+...+.+.+.+
T Consensus 89 -~~-~--~~~r-~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~-~~~~~~~i~~~~ 162 (393)
T PRK11195 89 -IH-P--LLAY-GLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADP-HAEAALAVCALI 162 (393)
T ss_pred -HH-H--HHHH-HHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 11 1 2222 2333344445566678999999999999999999999999999999999999886 355555555444
Q ss_pred HHHHHHHhheecccC
Q psy11547 514 SLLGTIFFYVYLPET 528 (587)
Q Consensus 514 ~~~~~~~~~~~~~~~ 528 (587)
.+++. +..+.+|+.
T Consensus 163 ~~~~~-~~~~~l~~~ 176 (393)
T PRK11195 163 YLLAA-LFNLFIPRL 176 (393)
T ss_pred HHHHH-HHHhcCCCC
Confidence 43333 333445543
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.01 E-value=1e-08 Score=103.43 Aligned_cols=156 Identities=11% Similarity=0.003 Sum_probs=114.4
Q ss_pred hhhHhcHHHHHHhcCCC-cchHHHHHHHHHHHHHHHHhHHHhhcccCCchhhHhhhHHHHHHHHHHHHHHHhccCCCCCC
Q psy11547 352 NPVTFYAVNIFKDAGAH-VNNNLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEY 430 (587)
Q Consensus 352 ~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (587)
.......|.+.++.+.+ .+.+.......++..++++..+++.||+|||+.+..+.++.+++.+++......
T Consensus 20 ~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~~~-------- 91 (410)
T TIGR00885 20 DITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAAEI-------- 91 (410)
T ss_pred HhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhh--------
Confidence 33445667777888888 566788888999999999999999999999999999999988887765432211
Q ss_pred CcCccchhHHHHHHHHHHHHHhccccccceeeeeccCCCCchhhHHHHHHHHHHHHHHHHHHhhHHHHHh----------
Q psy11547 431 KFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTH---------- 500 (587)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~---------- 500 (587)
.+.+..+...++.+.+.+... +....++.+..|++.|++..++.+....+|..++|.+.+.+...
T Consensus 92 ----~~~~~~l~~~~l~G~g~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~ 166 (410)
T TIGR00885 92 ----MNYTLFLVGLFILTAGLGFLE-TAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDVL 166 (410)
T ss_pred ----ccHHHHHHHHHHHHhhHHHHH-hhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhh
Confidence 123333333444444444333 33346777888999999999999999999999999998877522
Q ss_pred ----------------hhhhhHHHHHHHHHHHHHHH
Q psy11547 501 ----------------LTKEGTFLMYGCISLLGTIF 520 (587)
Q Consensus 501 ----------------~g~~~~~~~~~~~~~~~~~~ 520 (587)
.+|+.+|.+.+++.++..++
T Consensus 167 ~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~ 202 (410)
T TIGR00885 167 DKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALL 202 (410)
T ss_pred hhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35888888877766655443
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.4e-09 Score=111.96 Aligned_cols=138 Identities=15% Similarity=0.080 Sum_probs=113.2
Q ss_pred HHHHHHHHHHHHHHHhHHHhhhccchhHHHHHhhHHHHHHHHHHHhcCCCCCCcchhhHHhhhhhhccccccccccceee
Q psy11547 132 WIASLSAIGTMVGCVLGGYMMDLVGRKMTLIITEVPTILGWALIALAPSLPSSILPWIFTGRILTGLGSGMVGAPSRIYT 211 (587)
Q Consensus 132 ~i~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i 211 (587)
+......+...++.++.+++.||+|||+.+.++.++.+++.++..+.++.. .+..++.-++.+++.+..++....+.
T Consensus 359 ~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (505)
T TIGR00898 359 LDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDL---YFLRTALAVLGKFGITSAFQMVYLYT 435 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCc---hHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334455677788899999999999999999999999999988888877542 01455566677777777788889999
Q ss_pred eeccCCCcchhHhHHHHHHHHHHHHHHHHhhhhh--hHHHHHHHHHHHHHHHHHHhcccCCCc
Q psy11547 212 AECSQPHLRGMLSSLASFGVSLGVLFEYSLGAFL--SWDTVAAISTIIPVLSIIAGCLMPESP 272 (587)
Q Consensus 212 ~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l--~wr~~f~~~~~~~~~~~~~~~~~~esp 272 (587)
.|.+|++.|+.++++......+|.+++|.+.+.. ++...+++.++..++..++.+++||+.
T Consensus 436 ~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~lpet~ 498 (505)
T TIGR00898 436 AELYPTVVRNLGVGVCSTMARVGSIISPFLVYLGEKWLFLPLVLFGGLALLAGILTLFLPETK 498 (505)
T ss_pred cccccHHHHhhhHhHHHHHHHHHHHHHhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCcCCC
Confidence 9999999999999999999999999999998833 667788888888888777777889874
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.5e-08 Score=104.72 Aligned_cols=144 Identities=16% Similarity=0.180 Sum_probs=110.6
Q ss_pred CccCcchhHHHHH-HHHHHHHHHHHhHHHhhhccchhHHHHHhhHHHHHHHHHH---Hhc-CCCCCCcchhhHHhhhhhh
Q psy11547 123 YRITSDESTWIAS-LSAIGTMVGCVLGGYMMDLVGRKMTLIITEVPTILGWALI---ALA-PSLPSSILPWIFTGRILTG 197 (587)
Q Consensus 123 ~~~s~~~~g~i~s-~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~---~~~-~~~~~~~~~~l~~~r~l~G 197 (587)
+|.+..+.+++.. ...++..++.+++|+++||+|+|+.+.++.++.+++.++. +.. ++.+ .+.+.-+++.
T Consensus 253 ~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~-----~l~~~~~l~~ 327 (491)
T PRK11010 253 VGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLY-----SMGAAVFFEN 327 (491)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHH-----HHHHHHHHHH
Confidence 8899999999974 6678999999999999999999998877666555544332 232 2332 3444556655
Q ss_pred ccccccccccceeeeeccCCCcchhHhHHHHHHHHHHHHHHHHhhhhh----hHHHHHHHHHHHHHHHHHHhcccCCC
Q psy11547 198 LGSGMVGAPSRIYTAECSQPHLRGMLSSLASFGVSLGVLFEYSLGAFL----SWDTVAAISTIIPVLSIIAGCLMPES 271 (587)
Q Consensus 198 ~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l----~wr~~f~~~~~~~~~~~~~~~~~~es 271 (587)
++.|...+...++..+..+++.+++..++.+...++|.++++.+.+.+ ||+..|.+.++++++.+++.++++++
T Consensus 328 ~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~~~~ 405 (491)
T PRK11010 328 LCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVCRQT 405 (491)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 555555566678888889999999999999999999998888888777 89999999999988887777665543
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.2e-08 Score=101.05 Aligned_cols=190 Identities=9% Similarity=-0.027 Sum_probs=120.0
Q ss_pred HHHHHHHHHHHhccchhhHhcHHHHHHhcCCC-cchHHHHHHHHHHHHHHHHhHHHhhc----ccCCchhhHhh-hHHHH
Q psy11547 337 VILMLYFLIYQFSGVNPVTFYAVNIFKDAGAH-VNNNLAAVIMGIVRLIFTIASCIMMK----KMGRRSLTFIS-SIGCG 410 (587)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~i~~~~~g~l~d----~~g~~~~~~~~-~~~~~ 410 (587)
+......+..++. +.....+.+.+++..|.+ ........+..+.+++..++.|+++| |+|||+.++.. .+...
T Consensus 7 i~~~~~~~Giq~~-~~l~~~~l~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~ 85 (477)
T TIGR01301 7 LRVASVAAGVQFG-WALQLSLLTPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVA 85 (477)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHH
Confidence 3444444444443 555666777788888887 55667778888999999999999999 59999987764 44555
Q ss_pred HHHHHHHHHHHhccCCCCCCCcCccch---hHHHHHHHHHHHHHhccccccceeeeeccCCCCch--hhHHHHHHHHHHH
Q psy11547 411 VSMTGLGLYIFATKDFWPEYKFPAFVS---YLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVR--GIVGGLTTCACHF 485 (587)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r--~~~~g~~~~~~~~ 485 (587)
++++++.+............ -..... +..++.+.+..........|. .+++.|.+|++.| +.+.++.+....+
T Consensus 86 ~~l~ll~~~~~~~~~~~~~~-~~~~~~~~i~~~~i~~~lld~~~n~~~~p~-rALiaDl~p~~~~~~~~a~~~~~~~~~l 163 (477)
T TIGR01301 86 FAVILIGFAADIGHLFGDNL-DKKTKPRAIIVFVVGFWILDVANNMLQGPC-RAFLADLTGGDARRTRIANAYFSFFMAI 163 (477)
T ss_pred HHHHHHHhCchhhhhccccc-cccchhHHHHHHHHHHHHHHHHHHHHHHHH-HHhcccccCchhHHHHHHHHHHHHHHHH
Confidence 55555444211100000000 000011 111222223333333333444 4899999998865 5789999999999
Q ss_pred HHHHHHHhhHHH--HHhh-------------hhhhHHHHHHHHHHHHHHHhheecccCC
Q psy11547 486 FIFLTVKSYNMF--QTHL-------------TKEGTFLMYGCISLLGTIFFYVYLPETK 529 (587)
Q Consensus 486 g~~i~~~~~g~l--~~~~-------------g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 529 (587)
|+.+++.+.+.. .+.. +.+..|++.+++.+++.++..+..+|..
T Consensus 164 G~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~ 222 (477)
T TIGR01301 164 GNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENP 222 (477)
T ss_pred HHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccC
Confidence 999999988764 2221 4566888888888888888878777754
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=3.5e-09 Score=106.34 Aligned_cols=136 Identities=14% Similarity=0.206 Sum_probs=114.5
Q ss_pred CccCcchhHHHHHHHHHHHHHHHHhHHHhhhccchhHHHHHhhHHHHHHHHHHHhcCCCCCCcchhhHHhhhhhhccccc
Q psy11547 123 YRITSDESTWIASLSAIGTMVGCVLGGYMMDLVGRKMTLIITEVPTILGWALIALAPSLPSSILPWIFTGRILTGLGSGM 202 (587)
Q Consensus 123 ~~~s~~~~g~i~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~ 202 (587)
.|.+..+.|.+.+...++..+..++.|++.||+|+|+.+..+.++.+++.++.+++++.+ .+++..++.|++.+.
T Consensus 235 ~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~g~~~~~ 309 (382)
T PRK11128 235 AGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALP-----WLIVIQILHCGTFTV 309 (382)
T ss_pred CCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHH-----HHHHHHHHHHHHHHH
Confidence 788999999999999999999999999999999999999999999999888888888888 888899999999998
Q ss_pred cccccceeeeeccCCCcchhHhHHHH-HHHHHHHHHHHHhhhhh----hHHHHHHHHHHHHHHHHHHh
Q psy11547 203 VGAPSRIYTAECSQPHLRGMLSSLAS-FGVSLGVLFEYSLGAFL----SWDTVAAISTIIPVLSIIAG 265 (587)
Q Consensus 203 ~~~~~~~~i~e~~~~~~r~~~~~~~~-~~~~~G~~i~~~l~~~l----~wr~~f~~~~~~~~~~~~~~ 265 (587)
..+....++.+. +++++++..++.. ....+|..+||.+++.+ ++ ..|+..+++.++.+++.
T Consensus 310 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~-~~~~~~~~~~~~~~~~~ 375 (382)
T PRK11128 310 CHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGA-GVFWVMALVALPALFIR 375 (382)
T ss_pred HHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHHH
Confidence 888888888886 5666788888875 55677888999999888 55 46666666666554443
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=98.96 E-value=4.2e-09 Score=106.41 Aligned_cols=137 Identities=10% Similarity=0.112 Sum_probs=115.2
Q ss_pred ccCcchhHHHHHHHHHHHHHHHHhHHHhhhccchhHHHHHhhHHHHHHHHHHHhcCCCCCCcchhhHHhhhhhhcccccc
Q psy11547 124 RITSDESTWIASLSAIGTMVGCVLGGYMMDLVGRKMTLIITEVPTILGWALIALAPSLPSSILPWIFTGRILTGLGSGMV 203 (587)
Q Consensus 124 ~~s~~~~g~i~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~ 203 (587)
+.+....|.+.++..+...++.++.|++.||+|||+.+.++.++.+++..+.+.+++.+ .+++.++++|++.+..
T Consensus 250 ~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~-----~~~~~~~l~g~~~~~~ 324 (396)
T TIGR00882 250 QQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTAL-----EVVILKMLHAFEVPFL 324 (396)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChH-----HHHHHHHHHHHHHHHH
Confidence 45566789999999999999999999999999999999999999999888878888888 8888999999987666
Q ss_pred ccccceeeeeccCCCcchhHhHH-HHHHHHHHHHHHHHhhhhh----hHHHHHHHHHHHHHHHHHHh
Q psy11547 204 GAPSRIYTAECSQPHLRGMLSSL-ASFGVSLGVLFEYSLGAFL----SWDTVAAISTIIPVLSIIAG 265 (587)
Q Consensus 204 ~~~~~~~i~e~~~~~~r~~~~~~-~~~~~~~G~~i~~~l~~~l----~wr~~f~~~~~~~~~~~~~~ 265 (587)
......++.+..+++.++...+. ++....+|.++++.+++++ ||+..|.+.+++.++..++.
T Consensus 325 ~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~~ 391 (396)
T TIGR00882 325 LVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTLIS 391 (396)
T ss_pred HHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 55666667777777777776665 6678899999999988888 89999999888887766554
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.95 E-value=7.3e-09 Score=94.54 Aligned_cols=177 Identities=18% Similarity=0.139 Sum_probs=127.9
Q ss_pred HHHHHHHHHhhhhhhccccccHHHHHhhhcCCCCCccCcchhHHHHHHHHHHHHHHHHhHHHhhhccchhHHHHHhhHHH
Q psy11547 89 LTLAVFANLGNVNTGMVFGFSAAATSQLISRDSPYRITSDESTWIASLSAIGTMVGCVLGGYMMDLVGRKMTLIITEVPT 168 (587)
Q Consensus 89 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~i~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~ 168 (587)
|..++.........|. ....+..-|++.+. +|.|.+|...+.+.-.+|..+| ++.|.+.|++|.+.++++|.+..
T Consensus 2 W~~l~a~~~v~~~~Gt-~Y~Fs~yS~~Lk~~---l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~gp~~~l~iG~~~~ 76 (250)
T PF06813_consen 2 WLSLVASIWVQLCSGT-TYTFSAYSPQLKSR---LGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRFGPWVVLLIGAVLG 76 (250)
T ss_pred hhhHHHHHHHHHhcCc-ccchhhhhHHHHHH---hCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhcchHHHHHHHHHHH
Confidence 3344444444444443 33344566777775 9999999999999999999875 89999999999999999999999
Q ss_pred HHHHHHHHhcCCCC--CCcchhhHHhhhhhhccccccccccceeeeeccCCCcchhHhHHHHHHHHHHHHHHHHhhhhh-
Q psy11547 169 ILGWALIALAPSLP--SSILPWIFTGRILTGLGSGMVGAPSRIYTAECSQPHLRGMLSSLASFGVSLGVLFEYSLGAFL- 245 (587)
Q Consensus 169 ~i~~~~~~~~~~~~--~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l- 245 (587)
.+|..+...+-+-. ....|.+.+..++.|.+.+....++.....+.||. +||.+.++.-...+++..+-..+...+
T Consensus 77 ~~GY~~~~l~~~~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~-~RG~vvgilk~~~GLSaai~t~i~~~~f 155 (250)
T PF06813_consen 77 FVGYGLLWLAVSGRIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR-SRGTVVGILKGFFGLSAAIFTQIYSAFF 155 (250)
T ss_pred HHHHHHHHHHHhCccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc-ccCceehhhhHHHHhHHHHHHHHHHHHc
Confidence 99998877653322 12344777888888888777667766666788875 699999999999999988887777666
Q ss_pred --h-HHHHHHHHHHHHHHHHHHhcccCCC
Q psy11547 246 --S-WDTVAAISTIIPVLSIIAGCLMPES 271 (587)
Q Consensus 246 --~-wr~~f~~~~~~~~~~~~~~~~~~es 271 (587)
+ -...+.......++.++..++++..
T Consensus 156 ~~~~~~fll~la~~~~~v~l~~~~~vr~~ 184 (250)
T PF06813_consen 156 GDDPSSFLLFLAVLPAVVCLVAMFFVRPV 184 (250)
T ss_pred CCChHHHHHHHHHHHHHHHHHHhhheecc
Confidence 2 3444444444455555555554433
|
|
| >KOG3764|consensus | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.7e-09 Score=100.48 Aligned_cols=146 Identities=13% Similarity=0.107 Sum_probs=120.2
Q ss_pred cchHHHHHHHHHHHHHHHHhHHHhhcccCCchhhHhhhHHHHHHHHHHHHHHHhccCCCCCCCcCccchhHHHHHHHHHH
Q psy11547 369 VNNNLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFT 448 (587)
Q Consensus 369 ~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (587)
.+.++.....++.+++.+++.|.+.||+|+|..+++|+..+....+++++ ....+..++.=.+-+
T Consensus 106 ~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFaf---------------g~sy~~l~vAR~LQg 170 (464)
T KOG3764|consen 106 TQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAF---------------GNSYPMLFVARSLQG 170 (464)
T ss_pred cchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHH---------------cchhHHHHHHHHHhh
Confidence 45577888889999999999999999999999999999999999999988 233344444444445
Q ss_pred HHHhccccccceeeeeccCCCCc-hhhHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhHHHHHHHHHHHHHHHhheeccc
Q psy11547 449 AASTIGYLVVPWVMIGEVYPTKV-RGIVGGLTTCACHFFIFLTVKSYNMFQTHLTKEGTFLMYGCISLLGTIFFYVYLPE 527 (587)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~p~~~-r~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 527 (587)
.+..... ....+++++.+|++. |+.++|+...+..+|-.++|.++|.+++..|++..|.++++++++-..+.++.++.
T Consensus 171 vgsA~~~-tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p 249 (464)
T KOG3764|consen 171 VGSAFAD-TSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEP 249 (464)
T ss_pred hhHHHHH-hhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCc
Confidence 5544444 334589999999875 69999999999999999999999999999999999999999999988887766655
Q ss_pred CCC
Q psy11547 528 TKN 530 (587)
Q Consensus 528 ~~~ 530 (587)
++.
T Consensus 250 ~~~ 252 (464)
T KOG3764|consen 250 TEM 252 (464)
T ss_pred ccc
Confidence 443
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.9e-08 Score=97.69 Aligned_cols=157 Identities=9% Similarity=0.024 Sum_probs=115.4
Q ss_pred hhHhcHHHHHHhcCCC-cc-hHHHHHHHHHHHHHHHHhHHHhhcccCCchhhHhhhHHHHHHHHHHHHHHHhccCCCCCC
Q psy11547 353 PVTFYAVNIFKDAGAH-VN-NNLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEY 430 (587)
Q Consensus 353 ~~~~~~~~~~~~~g~~-~~-~~~~~~~~~~~~~i~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (587)
...+..|++.++.|++ .+ .+.....+..+..+..+.+|++.||+|.|+++.++.+..++..+++++.
T Consensus 44 n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa----------- 112 (511)
T TIGR00806 44 GESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLG----------- 112 (511)
T ss_pred hHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHH-----------
Confidence 3555667777788998 45 5788888999999999999999999999999999999998888888872
Q ss_pred CcCccchhHHHHHHHHHHHHHhccccccceeeeeccCCCCchhhHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhHHH--
Q psy11547 431 KFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLTKEGTFL-- 508 (587)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~-- 508 (587)
.......+.-++++.+-+..+ ....++...+|++.|+++.|+.+....+|.++++++.+. ...+||+....
T Consensus 113 ----~Sl~~L~i~R~llGvaEA~~~--A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql-l~s~gWr~y~~Ln 185 (511)
T TIGR00806 113 ----TSVWHMQLMEVFYSVTMAARI--AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL-LVTLGWISYSTLN 185 (511)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCchhHHHHH
Confidence 122333333444444444443 445899999999999999999999999999999999998 55678775332
Q ss_pred -HHHHHHHHHHHHhheecccC
Q psy11547 509 -MYGCISLLGTIFFYVYLPET 528 (587)
Q Consensus 509 -~~~~~~~~~~~~~~~~~~~~ 528 (587)
+..+...++.+ ..+++|..
T Consensus 186 ~Isl~s~~~a~~-~a~~LP~~ 205 (511)
T TIGR00806 186 IISLVFMTFSVF-LALFLKRP 205 (511)
T ss_pred HHHHHHHHHHHH-HHHhCCCC
Confidence 33333333333 33555643
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.3e-08 Score=107.94 Aligned_cols=189 Identities=15% Similarity=0.100 Sum_probs=126.6
Q ss_pred HHHHHHHHHHhccchhhHhcHHHHHHhcCCC-cchHHHHHHHHHHHHHHHHhHHHhhcccCCchhhHhhhHHHHHHHHHH
Q psy11547 338 ILMLYFLIYQFSGVNPVTFYAVNIFKDAGAH-VNNNLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGL 416 (587)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~ 416 (587)
+...+..+.+...........+.+-++++++ .+.++....+.++..++.++.+++.||.+||+.+.++.++++++.+++
T Consensus 36 ~~~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~ 115 (633)
T TIGR00805 36 LLLTCAQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLL 115 (633)
T ss_pred HHHHHHHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHH
Confidence 3333334444333344455556666678887 666788888999999999999999999999999999999999998887
Q ss_pred HHHHHhccCC-CC-------------CCCc-----------------C--c--cchhHHHHHHHHHHHHHhcccccccee
Q psy11547 417 GLYIFATKDF-WP-------------EYKF-----------------P--A--FVSYLPVLMLMTFTAASTIGYLVVPWV 461 (587)
Q Consensus 417 ~~~~~~~~~~-~~-------------~~~~-----------------~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (587)
++.......+ +. .... . . ...+..+++.-++.+.......+...+
T Consensus 116 alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~ 195 (633)
T TIGR00805 116 SLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGIS 195 (633)
T ss_pred hChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCch
Confidence 7643211000 00 0000 0 0 012333333444444444455566679
Q ss_pred eeeccCCCCchhhHHHHHHHHHHHHHHHHHHhhHHHHHhh----------------------hhhhHHHHHHHHHHHHHH
Q psy11547 462 MIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHL----------------------TKEGTFLMYGCISLLGTI 519 (587)
Q Consensus 462 ~~~~~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~~----------------------g~~~~~~~~~~~~~~~~~ 519 (587)
++.|.+|++.|+...|+.+....+|..+|+.+.+.+.+.+ +|+..|++.+++.++.++
T Consensus 196 ~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v 275 (633)
T TIGR00805 196 YIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSI 275 (633)
T ss_pred hhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999887543 255567777766666555
Q ss_pred Hhheeccc
Q psy11547 520 FFYVYLPE 527 (587)
Q Consensus 520 ~~~~~~~~ 527 (587)
.. +++++
T Consensus 276 ~l-~~~p~ 282 (633)
T TIGR00805 276 PF-FFFPK 282 (633)
T ss_pred HH-HhCcc
Confidence 43 34444
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=3.9e-08 Score=100.45 Aligned_cols=162 Identities=11% Similarity=-0.053 Sum_probs=101.0
Q ss_pred hccchhhHhcHHHHHHhcC---CC-cch---HHHHHHHHHHHHHHHHhHHHhhcccCCchhhHhhhHHHHHHHHHHHHHH
Q psy11547 348 FSGVNPVTFYAVNIFKDAG---AH-VNN---NLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYI 420 (587)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~g---~~-~~~---~~~~~~~~~~~~i~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~ 420 (587)
......+.+..|.+.++.+ .+ .+. ........++..+++++.|++.||+|||+.+..+.++.+++.++.++..
T Consensus 35 ~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~ 114 (432)
T PRK10406 35 WFDFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLISVCMMCFGSLVIACLP 114 (432)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhhcC
Confidence 3344455566666666653 22 111 1223334455668999999999999999999999999988888776521
Q ss_pred HhccCCCCCCCcCccchhHHHHHHHHHHHHHhccccccceeeeeccCCCCchhhHHHHHHHHHHHHHHHHHHhhHHHH--
Q psy11547 421 FATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQ-- 498 (587)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~-- 498 (587)
..... .......+...-++.+....+..+...+++.|.+|++.|+...++.......|..+++.+...+.
T Consensus 115 ~~~~~--------~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~ 186 (432)
T PRK10406 115 GYETI--------GTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVLQQT 186 (432)
T ss_pred CchhH--------HHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 11000 00001122222223333333344566689999999999999999887777777777766554433
Q ss_pred ------HhhhhhhHHHHHHHHHHHH
Q psy11547 499 ------THLTKEGTFLMYGCISLLG 517 (587)
Q Consensus 499 ------~~~g~~~~~~~~~~~~~~~ 517 (587)
+..||+..|++.++..++.
T Consensus 187 ~~~~~~~~~gWr~~F~i~~~~~ll~ 211 (432)
T PRK10406 187 LEDAELREWGWRIPFALGAVLAVVA 211 (432)
T ss_pred CCHHHHhccchHHHHHHHHHHHHHH
Confidence 2578999998766655543
|
|
| >KOG2615|consensus | Back alignment and domain information |
|---|
Probab=98.91 E-value=2.2e-09 Score=100.37 Aligned_cols=113 Identities=15% Similarity=0.119 Sum_probs=90.7
Q ss_pred chHHHHHHHHHHHHHHHHhHHHhhcccCCchhhHhhhHHHHHHHHHHHHHHHhccCCCCCCCcCccchhHHHHHHHHHHH
Q psy11547 370 NNNLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTA 449 (587)
Q Consensus 370 ~~~~~~~~~~~~~~i~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (587)
-.+.....+++...+.++..|.++||+|||.++.+|.+..++..++.+. ......++..=+.++
T Consensus 69 yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~----------------S~~F~afv~aR~l~G 132 (451)
T KOG2615|consen 69 YAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWAL----------------SRNFAAFVLARFLGG 132 (451)
T ss_pred hhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHhhh
Confidence 3467788899999999999999999999999999999998888777766 223323333234444
Q ss_pred HHhccccccceeeeeccCCCCchhhHHHHHHHHHHHHHHHHHHhhHHHHH
Q psy11547 450 ASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQT 499 (587)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~ 499 (587)
.+..- ..+..++++|+++++.|+.+++..++...+|..+||.++|++..
T Consensus 133 i~kgn-l~v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~ 181 (451)
T KOG2615|consen 133 IFKGN-LSVIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQ 181 (451)
T ss_pred hccCc-hHHHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHh
Confidence 44433 34446999999999999999999999999999999999999887
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.90 E-value=4.2e-09 Score=121.67 Aligned_cols=142 Identities=16% Similarity=0.202 Sum_probs=119.2
Q ss_pred HHHhhhcCCCCCccCcc-hhHHHHHHHHHHHHHHHHhHHHhhhccchhHHHHHhhHHHHHHHHHHHhcCCCCCCcchhhH
Q psy11547 112 ATSQLISRDSPYRITSD-ESTWIASLSAIGTMVGCVLGGYMMDLVGRKMTLIITEVPTILGWALIALAPSLPSSILPWIF 190 (587)
Q Consensus 112 ~~~~~~~~~~~~~~s~~-~~g~i~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~l~ 190 (587)
.+|.+..+ .+|.+.. +.|++.+...++..++.+++|+++||+++|+++.++.++.+++.++..+..+.+ .++
T Consensus 254 ~~~~~~~~--~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~ 326 (1146)
T PRK08633 254 NFPAYAKE--VLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPSLA-----SVL 326 (1146)
T ss_pred hhHHHHHH--HhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhhHH-----HHH
Confidence 34444332 3788888 999999999999999999999999999999999999998888888888888877 788
Q ss_pred HhhhhhhccccccccccceeeeeccCCCcchhHhHHHHHHHHHHHHHHHHhhhhh-----hHHHHHHHHHHHHHH
Q psy11547 191 TGRILTGLGSGMVGAPSRIYTAECSQPHLRGMLSSLASFGVSLGVLFEYSLGAFL-----SWDTVAAISTIIPVL 260 (587)
Q Consensus 191 ~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l-----~wr~~f~~~~~~~~~ 260 (587)
++.++.|++.+...+...+++.+.+|+++||+++++.+....+|.++++.++..+ ++...|++.+.+.++
T Consensus 327 ~~~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 401 (1146)
T PRK08633 327 VLFFLFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIALVTLI 401 (1146)
T ss_pred HHHHHHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence 8899999999999899999999999999999999999999999998888777665 455556655554433
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=98.90 E-value=2e-08 Score=99.91 Aligned_cols=161 Identities=9% Similarity=-0.028 Sum_probs=106.0
Q ss_pred hhHhcHHHHHHhcCCC-cchHHHHHHHHHHHHHHHHhHHHhhccc-----CCchhh-HhhhHHHHHHHHHHHHHHHhccC
Q psy11547 353 PVTFYAVNIFKDAGAH-VNNNLAAVIMGIVRLIFTIASCIMMKKM-----GRRSLT-FISSIGCGVSMTGLGLYIFATKD 425 (587)
Q Consensus 353 ~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~i~~~~~g~l~d~~-----g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 425 (587)
......|.+.++.|.+ .+.+..... .+...+ .++.|++.||+ |||+.+ ..+.+..+++...+.+....
T Consensus 6 ~~~~~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~--- 80 (356)
T TIGR00901 6 LVGNTLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPS--- 80 (356)
T ss_pred hHHhHHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcc---
Confidence 3455678888888888 444444322 333333 88999999998 788864 55555555555454431100
Q ss_pred CCCCCCcCccchhHHHHHHHHHHHHHhccccccceeeeeccCCCCchhhHHHHHHHHHHHHHHHHHHhhHHHHHhhh---
Q psy11547 426 FWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLT--- 502 (587)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g--- 502 (587)
...+.......+. ........+...+++.|.+|++.|+.+.|+......+|..+++.+.+.+.+..|
T Consensus 81 ---------~~l~~l~~~~~~~-~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~ 150 (356)
T TIGR00901 81 ---------TDLPLLAGLAFLI-AFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANT 150 (356)
T ss_pred ---------hhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Confidence 1122222222222 233333344445889999999999999999999999999999999999988888
Q ss_pred -----hhhHHHHHHHHHHHHHHHhheecccC
Q psy11547 503 -----KEGTFLMYGCISLLGTIFFYVYLPET 528 (587)
Q Consensus 503 -----~~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (587)
|+..|++.+++.++..++.++..+|.
T Consensus 151 ~~~~~wr~~f~i~ai~~l~~~~~~~~~~~e~ 181 (356)
T TIGR00901 151 GLITLWGYIFFWTALLILPGLLVTLFLAKEP 181 (356)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 99999888877766555544444553
|
|
| >KOG0253|consensus | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.9e-08 Score=93.68 Aligned_cols=129 Identities=18% Similarity=0.223 Sum_probs=100.5
Q ss_pred HHHHHHHHHHHhHHHhhhccchhHHHHHhhHHHHHHHHHHHhcCCCCCCcchhhHHhhhhhhccccccccccceeeeecc
Q psy11547 136 LSAIGTMVGCVLGGYMMDLVGRKMTLIITEVPTILGWALIALAPSLPSSILPWIFTGRILTGLGSGMVGAPSRIYTAECS 215 (587)
Q Consensus 136 ~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~ 215 (587)
+..+.-.-|.++.+++.||+|||++|..+.++++++.++...+.+-.. ...++..+|++ ..+.+.+.+.|..|.+
T Consensus 389 itslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~-~tvllf~araf----isg~fqvaYvYtPEVy 463 (528)
T KOG0253|consen 389 ITSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNA-YTVLLFTARAF----ISGAFQVAYVYTPEVY 463 (528)
T ss_pred HHHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcch-hHHHHHHHHHH----HhchheEEEEecCccc
Confidence 345666778899999999999999999999999999999888876541 01134445554 4455678899999999
Q ss_pred CCCcchhHhHHHHHHHHHHHHHHHHhhhhh--hHHHHHHHHHHHHHHHHHHhcccC
Q psy11547 216 QPHLRGMLSSLASFGVSLGVLFEYSLGAFL--SWDTVAAISTIIPVLSIIAGCLMP 269 (587)
Q Consensus 216 ~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l--~wr~~f~~~~~~~~~~~~~~~~~~ 269 (587)
|..-|+...|.-....-+|.++.|+++-.. +-..+..+.+...++..+...++|
T Consensus 464 PTavRatgvGtcSsmaRIggI~~p~iA~~~e~s~sl~i~vy~~~~ilagIavcffP 519 (528)
T KOG0253|consen 464 PTAVRATGVGTCSSMARIGGIFSPVIAMRAELSTSLPIFVYGALFILAGIAVCFFP 519 (528)
T ss_pred chhhhhcchhhhhhHHhhhhhhhhHHHHHhccceeehHHHHHHHHHHHHHHheeee
Confidence 999999999999999999999999999433 444555666666666666666665
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.7e-08 Score=97.47 Aligned_cols=138 Identities=14% Similarity=0.072 Sum_probs=106.8
Q ss_pred HHHhhhcCCCCCccCcchhHHHHHHHHHHHHHHHHhHHHhhhccchhHHHHHhhHHHHHHHHHHHhcCCCCCCcchhhHH
Q psy11547 112 ATSQLISRDSPYRITSDESTWIASLSAIGTMVGCVLGGYMMDLVGRKMTLIITEVPTILGWALIALAPSLPSSILPWIFT 191 (587)
Q Consensus 112 ~~~~~~~~~~~~~~s~~~~g~i~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~ 191 (587)
-.+.+..+.+.+|+++.+.++..+.+..+..+|.++.+++.||+|+|+++.++.++..++.++....++.. ...
T Consensus 162 w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~~~~~------~~~ 235 (310)
T TIGR01272 162 FLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALTHGYV------AMW 235 (310)
T ss_pred HHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCHH------HHH
Confidence 34444433224789999999999999999999999999999999999999988888888876666655432 334
Q ss_pred hhhhhhccccccccccceeeeeccCCCcchhHhHHHHHHHHHHHHHHHHhhhhh----hHHHHHHHHHHH
Q psy11547 192 GRILTGLGSGMVGAPSRIYTAECSQPHLRGMLSSLASFGVSLGVLFEYSLGAFL----SWDTVAAISTII 257 (587)
Q Consensus 192 ~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l----~wr~~f~~~~~~ 257 (587)
+-++.|++.+..+|...+...+..|++ .+.+.++. ....+|.+++|++.+.+ +.+..|++..+.
T Consensus 236 ~~~l~g~~~s~i~P~~~s~a~~~~~~~-~~~asai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~v~~~~ 303 (310)
T TIGR01272 236 FVLALGLFNSIMFPTIFSLALNALGRH-TSQGSGIL-CLAIVGGAIVPLLQGSLADCLGIQLAFALPVPC 303 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhh-hhhhHHHH-HHHHhcchHHHHHHHHHHHhccchHHHHHHHHH
Confidence 566889999999999999988887764 56667775 45668899999887777 667777644433
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=4.4e-08 Score=112.87 Aligned_cols=143 Identities=10% Similarity=0.000 Sum_probs=94.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHhhcccCCchhhHhhhHHHHHHHHHHHHHHHhccCCCCCCCcCccchhHHHHHHHHHHHHH
Q psy11547 372 NLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAAS 451 (587)
Q Consensus 372 ~~~~~~~~~~~~i~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (587)
++...+..+..++..++.|+++||++||+++.....+..+...+....... .+.+..+ .+.++.+..
T Consensus 55 ~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~------------~s~~~l~-~~~~l~gi~ 121 (1140)
T PRK06814 55 TLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHL------------NSVPLLF-AALFLMGIH 121 (1140)
T ss_pred HHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHH------------hhHHHHH-HHHHHHHHH
Confidence 445556677788999999999999999997644222222222211111111 1233333 333444444
Q ss_pred hccccccceeeeeccCCCCchhhHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhHHHHHHHHHHHHHHHhheecccC
Q psy11547 452 TIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLTKEGTFLMYGCISLLGTIFFYVYLPET 528 (587)
Q Consensus 452 ~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (587)
...+.|...+++.+.+|++.++.++|+.++...+|..+||.+.|.+.+..+|...|+..+++.++ .+++.+.+++.
T Consensus 122 ~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 197 (1140)
T PRK06814 122 SALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGNFVILVALLMGIAVL-GWLASLFIPKT 197 (1140)
T ss_pred HHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH-HHHHHhhCCCC
Confidence 44556777799999999999999999999999999999999999999999998877444333333 33334444443
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.1e-08 Score=104.81 Aligned_cols=115 Identities=21% Similarity=0.339 Sum_probs=98.5
Q ss_pred CcchhHHHHHHHHHHHHHHHHhHHHhhhccchhHHHHHhhHHHHHHHHHHHhcC-CCCCCcchhhHHhhhhhhccccccc
Q psy11547 126 TSDESTWIASLSAIGTMVGCVLGGYMMDLVGRKMTLIITEVPTILGWALIALAP-SLPSSILPWIFTGRILTGLGSGMVG 204 (587)
Q Consensus 126 s~~~~g~i~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~-~~~~~~~~~l~~~r~l~G~~~g~~~ 204 (587)
+..+.+++.+...++..++.+++++++||+|+|+++.++.++.+++.++..+.+ +.+ .+++..++.|++.+...
T Consensus 255 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~g~~~~~~~ 329 (437)
T TIGR00792 255 DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLP-----LILVLIILAGFGQNFVT 329 (437)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHH-----HHHHHHHHHHHHHHHHH
Confidence 456778888888999999999999999999999999999998888887777654 344 66778889999999888
Q ss_pred cccceeeeeccC-------CCcchhHhHHHHHHHHHHHHHHHHhhhhh
Q psy11547 205 APSRIYTAECSQ-------PHLRGMLSSLASFGVSLGVLFEYSLGAFL 245 (587)
Q Consensus 205 ~~~~~~i~e~~~-------~~~r~~~~~~~~~~~~~G~~i~~~l~~~l 245 (587)
+...++++|..+ ++++|.+.++.+....+|..+++.+.+.+
T Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~l 377 (437)
T TIGR00792 330 GLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLI 377 (437)
T ss_pred HHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999888765 45579999999999999999999988876
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=98.87 E-value=7.5e-09 Score=105.97 Aligned_cols=153 Identities=14% Similarity=0.111 Sum_probs=109.1
Q ss_pred hcHHHHHHhcCCCcchHHHHHHHHHHHHHHHHhHHHhhcccCCchhhHhhhHHHHHHHHHHHHHHHhccCCCCCCCcCcc
Q psy11547 356 FYAVNIFKDAGAHVNNNLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAF 435 (587)
Q Consensus 356 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (587)
..++.+..+.|-+....+......+...++.++.|.++|.+|||+.++.+.++..++.++.+. ..
T Consensus 65 ~~l~~I~~diG~~~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~at---------------A~ 129 (599)
T PF06609_consen 65 SILPYINADIGGSDNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCAT---------------AQ 129 (599)
T ss_pred HHHHHHHHhcCCCccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhc---------------CC
Confidence 334666677777767778888888899999999999999999999999999999999888775 22
Q ss_pred chhHHHHHHHHHHHHHhccccccceeeeeccCCCCchhhHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhHHHHHHHHHH
Q psy11547 436 VSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLTKEGTFLMYGCISL 515 (587)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~ 515 (587)
+....+....+.+.+. +........++|..|.+.|..+.++.....-....+++.+...+..+.+|++.|++.+....
T Consensus 130 ~~~~~iag~~l~Gvga--G~~~~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~ 207 (599)
T PF06609_consen 130 NMNTFIAGMVLYGVGA--GVQELAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSG 207 (599)
T ss_pred cHHHHHHHHHHHHHhh--HHHHHHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHH
Confidence 2233333344443332 22233345689999999998887766655444444666666666666789999998888777
Q ss_pred HHHHHhheec
Q psy11547 516 LGTIFFYVYL 525 (587)
Q Consensus 516 ~~~~~~~~~~ 525 (587)
++.+..++++
T Consensus 208 i~~vl~~~fY 217 (599)
T PF06609_consen 208 IALVLIFFFY 217 (599)
T ss_pred HHHHHHHHHh
Confidence 7766555444
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=8.7e-08 Score=98.00 Aligned_cols=163 Identities=12% Similarity=0.024 Sum_probs=104.4
Q ss_pred HHHHHHHHHHHhccchhhHhcHHHHHHhcCCCc-chH-HHHHHH-----HHHHHHHHHhHHHhhcccCCchhhHhhhHHH
Q psy11547 337 VILMLYFLIYQFSGVNPVTFYAVNIFKDAGAHV-NNN-LAAVIM-----GIVRLIFTIASCIMMKKMGRRSLTFISSIGC 409 (587)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~-~~~~~~-----~~~~~i~~~~~g~l~d~~g~~~~~~~~~~~~ 409 (587)
.....+..+........+....|.+.++.+.+. +.. ...... .+...++.++.|++.||+|||+.+..+.++.
T Consensus 17 ~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~ 96 (434)
T PRK15075 17 ILRVTSGNFLEMFDFFLFGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIVTLSIM 96 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHHHHHHH
Confidence 344444445555556677888888888887762 222 221111 2223467889999999999999999999988
Q ss_pred HHHHHHHHHHHHhccCCCCCCCcCccc----hhHHHHHHHHHHHHHhccccccceeeeeccCCCCchhhHHHHHHHHHHH
Q psy11547 410 GVSMTGLGLYIFATKDFWPEYKFPAFV----SYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHF 485 (587)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~ 485 (587)
.++.++.++.... ... ....++.-++.+.+.+. ..+....++.|.+|++.|+++.++.....++
T Consensus 97 ~~~~~l~~~~~~~-----------~~~~~~~~~~l~~~R~l~G~~~g~-~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~ 164 (434)
T PRK15075 97 ASGTLLIAFVPGY-----------ATIGLAAPLLVLLGRLLQGFSAGV-ELGGVSVYLAEIATPGRKGFYTSWQSASQQV 164 (434)
T ss_pred HHHHHHHHhCCcH-----------HHHHHHHHHHHHHHHHHhhccccc-cHHHHHHHHHhhCCcccchHHHHHHHHHHHH
Confidence 8888777662111 000 00112222222222222 2333347899999999999999999988888
Q ss_pred HHHHHHHhhHHH--------HHhhhhhhHHHHHH
Q psy11547 486 FIFLTVKSYNMF--------QTHLTKEGTFLMYG 511 (587)
Q Consensus 486 g~~i~~~~~g~l--------~~~~g~~~~~~~~~ 511 (587)
|..+++.+.+.+ .+..||+..|++.+
T Consensus 165 g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~ 198 (434)
T PRK15075 165 AVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGC 198 (434)
T ss_pred HHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHH
Confidence 887777776655 35678998887643
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=98.85 E-value=5.4e-08 Score=98.47 Aligned_cols=166 Identities=14% Similarity=0.158 Sum_probs=114.5
Q ss_pred HhccchhhHhcHHHHHHhcCCC-cchHHHHHHHHHHHHHHHHhHHHhhccc-----CCch-hhHhhhHHHHHHHHHHHHH
Q psy11547 347 QFSGVNPVTFYAVNIFKDAGAH-VNNNLAAVIMGIVRLIFTIASCIMMKKM-----GRRS-LTFISSIGCGVSMTGLGLY 419 (587)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~i~~~~~g~l~d~~-----g~~~-~~~~~~~~~~~~~~~~~~~ 419 (587)
+.........-.|.++++.|++ .+.+....+... .+..++.|+++||+ |||+ .+.++.++.+++...+.+.
T Consensus 11 ~~~~~~~~~~~~~~~l~~~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~~~ 88 (402)
T PRK11902 11 SGLPLALTSGTLQAWMTVEGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMAFC 88 (402)
T ss_pred HhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHHhc
Confidence 4445666777889999999998 444555443333 58889999999999 7765 6777777777666665542
Q ss_pred HHhccCCCCCCCcCccchhHHHHHHHHHHHHHhccccccceeeeeccCCCCchhhHHHHHHHHHHHHHHHHHHhhHHHHH
Q psy11547 420 IFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQT 499 (587)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~ 499 (587)
.. ......+....++...+.....+...+++.|.+|+++|+++.++......+|..+++.+.+.+.+
T Consensus 89 ~~-------------~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~ 155 (402)
T PRK11902 89 PP-------------HAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLAD 155 (402)
T ss_pred Cc-------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHh
Confidence 11 11222222222222333444445556889999999999999999999889999999999998888
Q ss_pred h-hhhhhHHHHHHHHHHHHHHHhheecccC
Q psy11547 500 H-LTKEGTFLMYGCISLLGTIFFYVYLPET 528 (587)
Q Consensus 500 ~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (587)
. .||+..|++.+++.++..+. .+..+|+
T Consensus 156 ~~~gw~~~f~i~a~~~l~~~l~-~~~~~e~ 184 (402)
T PRK11902 156 RVLGWGNTYLLMAGLMLAGALT-TLWAPEP 184 (402)
T ss_pred cccCHHHHHHHHHHHHHHHHHH-HHhcCCC
Confidence 5 49999999888777665443 3444544
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.4e-08 Score=100.61 Aligned_cols=143 Identities=13% Similarity=0.101 Sum_probs=105.7
Q ss_pred CccCcchhHHHHHHHH-HHHHHHHHhHHHhhhccchhHHHHHhhHHHHHHHHHHHhcCCCC-CCcchhhHHhhhhhhccc
Q psy11547 123 YRITSDESTWIASLSA-IGTMVGCVLGGYMMDLVGRKMTLIITEVPTILGWALIALAPSLP-SSILPWIFTGRILTGLGS 200 (587)
Q Consensus 123 ~~~s~~~~g~i~s~~~-l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~-~~~~~~l~~~r~l~G~~~ 200 (587)
.|.+.++.|++..... ....++.++.|++.||+|+|+++.++.++.++..+......+.+ ......+....++.+++.
T Consensus 238 ~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (390)
T TIGR02718 238 AGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSCSAFGSLIT 317 (390)
T ss_pred cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHHHHHHHH
Confidence 7999999999988876 46677889999999999999999887776644333322211111 001113344555666667
Q ss_pred cccccccceeeeeccCC-CcchhHhHHHHHHHHHHHHHHHHhhhhh----hHHHHHHHHHHHHHHHHHHh
Q psy11547 201 GMVGAPSRIYTAECSQP-HLRGMLSSLASFGVSLGVLFEYSLGAFL----SWDTVAAISTIIPVLSIIAG 265 (587)
Q Consensus 201 g~~~~~~~~~i~e~~~~-~~r~~~~~~~~~~~~~G~~i~~~l~~~l----~wr~~f~~~~~~~~~~~~~~ 265 (587)
|...+...+.+.+..++ +++++.+++.+...++|..++|.+++.+ ||+..|++.+++.++..++.
T Consensus 318 g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~~~ 387 (390)
T TIGR02718 318 GITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAILLA 387 (390)
T ss_pred HHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHh
Confidence 77777777777777765 7889999999999999999999999987 88899998887777665543
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.2e-07 Score=97.89 Aligned_cols=164 Identities=10% Similarity=0.003 Sum_probs=104.8
Q ss_pred chhhHhcHHHHHHhcCCC-cchHHHHHHHHHHHHHHHHhHHHhhcccCCchhhHhhhHHHHHHHHHHHHHHHhccCCCCC
Q psy11547 351 VNPVTFYAVNIFKDAGAH-VNNNLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPE 429 (587)
Q Consensus 351 ~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (587)
.+.+..+.+.+.++.|++ .+.+....+.. ....+.++.|++.||+|+|+++.++.++..++.+++++.... .-
T Consensus 43 ~y~fsv~s~~L~~~lgls~~~l~~i~svg~-~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~-~i---- 116 (591)
T PTZ00207 43 MYAFNLISGAMQARYNLTQRDLSTITTVGI-AVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQE-VI---- 116 (591)
T ss_pred HHHHHHHHHHHHHHhCcCHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcc-cc----
Confidence 445667778888888887 33344443322 223456678999999999999999999999999887773211 00
Q ss_pred CCcCccchhHHHHHHHHHHHHHhccccccceeeeeccCCCCchhhHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhHHHH
Q psy11547 430 YKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLTKEGTFLM 509 (587)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~ 509 (587)
..+.+...+...+.+.+.+ ...+.....+.+.+| +.||.+.|+......+|+++.+.+...+.. .++...|++
T Consensus 117 ----~~s~~~l~l~r~l~G~G~~-~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~-~~~~~~fl~ 189 (591)
T PTZ00207 117 ----EGSVVRLSVYNGLMTLGCM-LFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFS-DNTSAYFFF 189 (591)
T ss_pred ----cCcHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHH
Confidence 0122333333333333322 222233356677887 678999999999999999876555554544 356677777
Q ss_pred HHHHHHHHHHHhheeccc
Q psy11547 510 YGCISLLGTIFFYVYLPE 527 (587)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~ 527 (587)
.+++.++..++.+.+++.
T Consensus 190 l~vl~~vv~ll~~~~vr~ 207 (591)
T PTZ00207 190 LMSFALVVGILAIVFMRL 207 (591)
T ss_pred HHHHHHHHHHHHHhheeC
Confidence 777777766666555543
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=98.82 E-value=9.7e-07 Score=92.99 Aligned_cols=144 Identities=17% Similarity=0.217 Sum_probs=117.6
Q ss_pred CccCcchhHHHHHHHHHHHHHHHHhHHHhhhc-cchhHHHHHhhHHHHHHHHHHHhcCCCCC---CcchhhHHhhhhhhc
Q psy11547 123 YRITSDESTWIASLSAIGTMVGCVLGGYMMDL-VGRKMTLIITEVPTILGWALIALAPSLPS---SILPWIFTGRILTGL 198 (587)
Q Consensus 123 ~~~s~~~~g~i~s~~~l~~~i~~~~~g~l~dr-~Grr~~l~~~~~~~~i~~~~~~~~~~~~~---~~~~~l~~~r~l~G~ 198 (587)
+|.+.++...+...+....-+..+++|.++|+ +||+++++++.++..+|.++.++...... ......+++-.+..+
T Consensus 18 lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLaLia~ 97 (654)
T TIGR00926 18 LGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLALIAL 97 (654)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHHHHHh
Confidence 78889999999999999999999999999997 69999999999999999988887532110 011236677888899
Q ss_pred cccccccccceeeeeccCCCc---chhHhHHHHHHHHHHHHHHHHhhhhh-----------hHHHHHHHHHHHHHHHHHH
Q psy11547 199 GSGMVGAPSRIYTAECSQPHL---RGMLSSLASFGVSLGVLFEYSLGAFL-----------SWDTVAAISTIIPVLSIIA 264 (587)
Q Consensus 199 ~~g~~~~~~~~~i~e~~~~~~---r~~~~~~~~~~~~~G~~i~~~l~~~l-----------~wr~~f~~~~~~~~~~~~~ 264 (587)
|.|+.-|+..+...|.+++++ |...+.++..+.++|.++++++..++ +|...|.+.++..++.+++
T Consensus 98 G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lv 177 (654)
T TIGR00926 98 GTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILALIV 177 (654)
T ss_pred hccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHH
Confidence 999999999999999987543 56788888999999999998887766 3888998888887776665
Q ss_pred hc
Q psy11547 265 GC 266 (587)
Q Consensus 265 ~~ 266 (587)
..
T Consensus 178 f~ 179 (654)
T TIGR00926 178 FM 179 (654)
T ss_pred HH
Confidence 44
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.2e-07 Score=96.53 Aligned_cols=135 Identities=11% Similarity=-0.041 Sum_probs=98.3
Q ss_pred chhhHhcHHHHHHhcCCC-cchHHHHHHHHHHHHHHHHhHHHhhcccCCchhhHhhhHHHHHHHHHHHHHHHhccCCCCC
Q psy11547 351 VNPVTFYAVNIFKDAGAH-VNNNLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPE 429 (587)
Q Consensus 351 ~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (587)
......+.|.+.++.+.+ .+.+.....+.++..++.++.|++.||+|||+++..+.++..++.+++......
T Consensus 42 ~~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~~a------- 114 (438)
T PRK10133 42 NNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEI------- 114 (438)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhc-------
Confidence 455667788887778888 566788888999999999999999999999999999999988888765321111
Q ss_pred CCcCccchhHHHHHHHHHHHHHhccccccceeeeeccCCCCchhhHHHHHHHHHHHHHHHHHHhhHHHH
Q psy11547 430 YKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQ 498 (587)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~ 498 (587)
.+.+..+...++.+.+.+... +..+.++.+..|++.|....++.+....+|..+++.+.+.+.
T Consensus 115 -----~~~~~ll~~r~l~G~g~g~~~-~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~ 177 (438)
T PRK10133 115 -----MNYTLFLVGLFIIAAGLGCLE-TAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_pred -----CCHHHHHHHHHHHHHHHHHHH-hhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 223333444444444444433 333466778777777666789999999999999998876554
|
|
| >KOG2532|consensus | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.5e-07 Score=95.08 Aligned_cols=144 Identities=14% Similarity=0.164 Sum_probs=118.4
Q ss_pred cchHHHHHHHHHHHHHHHHhHHHhhcccCCchhhHhhhHHHHHHHHHHHHHHHhccCCCCCCCcCccchhHHHHHHHHHH
Q psy11547 369 VNNNLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFT 448 (587)
Q Consensus 369 ~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (587)
.+.+........+.+++.+.++++.||+|.|+++..+.++.+++.++..+.... ..+..++.-++.+
T Consensus 73 ~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~-------------~~~~~~~~R~lqG 139 (466)
T KOG2532|consen 73 TEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASI-------------GFYLLLVLRFLQG 139 (466)
T ss_pred HHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHh-------------cchhhHHHHHHhH
Confidence 455678888899999999999999999999999999999999999988886654 2333344444444
Q ss_pred HHHhccccccceeeeeccCCCCchhhHHHHHHHHHHHHHHHHHHhhHHHHHh-hhhhhHHHHHHHHHHHHHHHhheecc
Q psy11547 449 AASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTH-LTKEGTFLMYGCISLLGTIFFYVYLP 526 (587)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~ 526 (587)
.+.+..+ |....+..+-.|+++|++..++.....++|.+++-++.|.+.+. .||...|++.++++++..++.+++..
T Consensus 140 l~~g~~~-pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~ 217 (466)
T KOG2532|consen 140 LGQGVLF-PAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYS 217 (466)
T ss_pred HHHhHHH-hhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhc
Confidence 4444444 55568999999999999999999999999999999999999998 99999999999998887776555544
|
|
| >KOG0637|consensus | Back alignment and domain information |
|---|
Probab=98.79 E-value=9.5e-09 Score=98.70 Aligned_cols=126 Identities=18% Similarity=0.250 Sum_probs=96.7
Q ss_pred CccCcchhHHHHHHHHHHHHHHHHhHHHhhhc----cchhHH-HHHhhHHHHHHHHHHHhcCCCCC-------C-----c
Q psy11547 123 YRITSDESTWIASLSAIGTMVGCVLGGYMMDL----VGRKMT-LIITEVPTILGWALIALAPSLPS-------S-----I 185 (587)
Q Consensus 123 ~~~s~~~~g~i~s~~~l~~~i~~~~~g~l~dr----~Grr~~-l~~~~~~~~i~~~~~~~~~~~~~-------~-----~ 185 (587)
+|+.....+.+-.+.-+...+.+++.|..+|| |||||- +..+.++..++.++..++.++.. . .
T Consensus 62 lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig~~lgd~~~~~~~~ra 141 (498)
T KOG0637|consen 62 LGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIGLLLGDNERKPVKPRA 141 (498)
T ss_pred cCCCcccccccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhhHHhcCCcccccchHH
Confidence 88888888899889999999999999999995 898655 55566667777778887765541 0 0
Q ss_pred chhhHHhhhhhhccccccccccceeeeeccCCCcchh-HhHHHHHHHHHHHHHHHHhhhhhhHH
Q psy11547 186 LPWIFTGRILTGLGSGMVGAPSRIYTAECSQPHLRGM-LSSLASFGVSLGVLFEYSLGAFLSWD 248 (587)
Q Consensus 186 ~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~-~~~~~~~~~~~G~~i~~~l~~~l~wr 248 (587)
...++++--+.=++.-.....+.+++.|...++++.+ +++++....++|.++|..++.+.+|+
T Consensus 142 i~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~y~~~~ 205 (498)
T KOG0637|consen 142 IVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGSYLGLY 205 (498)
T ss_pred HHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceeeeecccccCce
Confidence 1223344444445666777888999999997766666 99999999999999999999888654
|
|
| >KOG3810|consensus | Back alignment and domain information |
|---|
Probab=98.79 E-value=3.9e-07 Score=84.31 Aligned_cols=360 Identities=14% Similarity=0.143 Sum_probs=218.5
Q ss_pred CCccCcchhH-HHHHHHHHHHHHHHHhHHHhhhccchhHHHHHhhHHHHHHHHHHHhcCCCCCCcchhhHHhhhhhhccc
Q psy11547 122 PYRITSDEST-WIASLSAIGTMVGCVLGGYMMDLVGRKMTLIITEVPTILGWALIALAPSLPSSILPWIFTGRILTGLGS 200 (587)
Q Consensus 122 ~~~~s~~~~g-~i~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~ 200 (587)
+.|++..|+. -+.-+..-.+.+.-++.=.+.|..-.|++++.-.+...+...+.-+.++.+ .+-+.-++.|...
T Consensus 35 ~~NlT~~~l~~evyPvwTYSYLv~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g~sV~-----~mQvlE~FyG~~t 109 (433)
T KOG3810|consen 35 DKNLTEDQLTNEVYPVWTYSYLVGLVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFGPSVK-----AMQVLEFFYGPAT 109 (433)
T ss_pred CCCccHHHHhcccccchhHHHHHHHHHHHHHhhhhhcceeeeeeccchhHHHHHHHhcCCch-----heeeehhhcChHH
Confidence 5677776653 344455666777777888899999999999998888888889999999999 8888999999976
Q ss_pred cccccccceeeeeccCCCcchhHhHHHHHHHHHHHHHHHHhhhhh------hHHHHHHHHHHHHHHHHHHhcccCCCchH
Q psy11547 201 GMVGAPSRIYTAECSQPHLRGMLSSLASFGVSLGVLFEYSLGAFL------SWDTVAAISTIIPVLSIIAGCLMPESPSW 274 (587)
Q Consensus 201 g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l------~wr~~f~~~~~~~~~~~~~~~~~~esp~~ 274 (587)
+ ...+-++++-+..+|+++.++.+....+.-.|..+|..++..+ ++...-.+......+..++.+++|..++.
T Consensus 110 A-aEIAYysYIYs~Vd~~~Yqrvt~y~RaA~L~g~~~g~vlaQlLvs~~~~sy~~LN~ISL~~~~ia~~~A~fLP~v~rS 188 (433)
T KOG3810|consen 110 A-AEIAYYSYIYSKVDPEMYKRVTGYCRAAFLVGKFVGSVLAQLLVSLETLSYTTLNYISLAEVTIAVLLALFLPRVKRS 188 (433)
T ss_pred H-HHHhhhheeeeecCHHHHHHHHHHhHHHHHHHhHHHhHHHHHHhhhcccchhhhchhhHHHHHHHHHHHhhCCCCchh
Confidence 5 4578999999999999999999999999999999999988887 44555555555555566666777776644
Q ss_pred HHhcCCHHHHHHHHHHHhCCCcchHHHHhhHHHHHHHHHHHhhhhhhHhHHhhhcCCchHHHHHHHHHHHHHHhccchhh
Q psy11547 275 LLSQGRKDACRNSLRRLRANNYDVEKEVQGLYEFSKRQETQKSRNFKETLAAIVEPACLKPFVILMLYFLIYQFSGVNPV 354 (587)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (587)
+..+.+.++ ....+....+. .....+ ..+..-..-.+++....++|...+.. ++.....++++-+
T Consensus 189 l~f~~~~~~--~~v~~~e~~~~--~~~~~~------~l~~~~~~l~~~l~~~y~np~ll~WS-----lWwAl~scg~~QV 253 (433)
T KOG3810|consen 189 LYFHRLEDK--ISVGDLEEMNP--QASYMS------YLRGAFVLLWRDLQECYSNPRLLKWS-----LWWALASCGYYQV 253 (433)
T ss_pred hhhhccccc--ceeccchhcCc--cchhhH------HHHHHHHHHHHHHHHHhcCchhhhhH-----HHHHHhhchhHHH
Confidence 332222221 00000000000 000000 00000111122334445555544333 3333444567778
Q ss_pred HhcHHHHHHhcCCCcch---HHHHHHHHHHHHHHHHhHHHhhcccCCchhhH--hhhHHHHHHHHHHHHHHHhccCCCCC
Q psy11547 355 TFYAVNIFKDAGAHVNN---NLAAVIMGIVRLIFTIASCIMMKKMGRRSLTF--ISSIGCGVSMTGLGLYIFATKDFWPE 429 (587)
Q Consensus 355 ~~~~~~~~~~~g~~~~~---~~~~~~~~~~~~i~~~~~g~l~d~~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (587)
..|...+.++..-.... +..=.+..+.+.++.++.|++.-++.|..-+. ++.+..+...+.+..
T Consensus 254 ~nY~Q~LW~~~~~~~~~vyNG~veAv~tlLGa~~~~~~g~l~i~w~r~g~~ll~~~s~~~agllf~m~~----------- 322 (433)
T KOG3810|consen 254 TNYTQILWKEVAPNPANVYNGAVEAVSTLLGAIAALAAGYLNINWNRWGDLLLAVGSAVQAGLLFIMAQ----------- 322 (433)
T ss_pred HHHHHHHHHhhCCCchhhhcCHHHHHHHHHHHHHHHHHHheeeccchhhHHHHHHHHHHhhhhhhhhhc-----------
Confidence 88888888876422121 23444556677888888999876666653333 332222222222221
Q ss_pred CCcCccchhHHHHHHHHHHHHHhccccccceeeeeccCCCCchhhHHHHHHHHHHHHHHHHHHhhHHHHHhhh-------
Q psy11547 430 YKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLT------- 502 (587)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g------- 502 (587)
....|.......++...+.... ++....+++....+.-|..+|+..++.-+-..+...+ ..|..|
T Consensus 323 ----t~~Iw~~Ya~yvlfr~~y~l~i-tiA~~~iA~nL~~e~~gLvFGiNTFvAl~lQsilT~i---Vvd~~g~~L~ir~ 394 (433)
T KOG3810|consen 323 ----TQHIWVCYAGYVLFRVIYQLTI-TIATFQIARNLSSELFGLVFGINTFVALILQSILTLI---VVDDRGLGLDIRT 394 (433)
T ss_pred ----ccceehhhhhHHHHHhhHhhhh-hHHHHHHHHhhhhhhheeeeehHHHHHHHHHHhheEE---EEcccccCCCcce
Confidence 2445666666666666555544 3333455566667777899998877766555444333 233222
Q ss_pred ----hhhHHHHHHHHHHHHHHHh
Q psy11547 503 ----KEGTFLMYGCISLLGTIFF 521 (587)
Q Consensus 503 ----~~~~~~~~~~~~~~~~~~~ 521 (587)
+..-|.+++++.++...+.
T Consensus 395 Q~~~Y~~Yf~v~~~i~~~~~~~~ 417 (433)
T KOG3810|consen 395 QFVVYSSYFIVLGVIFLIGFGIE 417 (433)
T ss_pred eEEEEeehHHHHHHHHHHHHHHH
Confidence 2335677777777665543
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.4e-07 Score=93.82 Aligned_cols=147 Identities=13% Similarity=0.021 Sum_probs=103.8
Q ss_pred hhhHhcHHHHHHhcCCC-cchHHHHHHHHHHHHHHHHhHHHhhcccCCchhhHhhhHHHHHHHHHHHHHHHhccCCCCCC
Q psy11547 352 NPVTFYAVNIFKDAGAH-VNNNLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEY 430 (587)
Q Consensus 352 ~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (587)
.......|.+.++.|.+ .+.+.......++..++.++.|++.||+|||+.+..+.++..++.+.. . .
T Consensus 17 ~~~~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~---~-------- 84 (355)
T TIGR00896 17 TSVGPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-S---A-------- 84 (355)
T ss_pred ccCcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-H---h--------
Confidence 34556778888888888 566788888999999999999999999999999988877766655443 2 1
Q ss_pred CcCccchhHHHHHHHHHHHHHhccccccceeeeeccCCCCchhhHHHHHHHHHHHHHHHHHHhhHHHHHhhh--hhhHHH
Q psy11547 431 KFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLT--KEGTFL 508 (587)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g--~~~~~~ 508 (587)
.+.+..++..++.+.+.+... +.....+.|.+| +.|+++.++.+....+|..+++.+.+.+.+..+ |+..|.
T Consensus 85 ----~~~~~l~~~~~~~g~g~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~ 158 (355)
T TIGR00896 85 ----PGTALLFAGTALIGVGIAIIN-VLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALA 158 (355)
T ss_pred ----ccHHHHHHHHHHHHHHHHHHh-ccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 123333333333333333222 222356677776 578999999999999999999999988887653 777776
Q ss_pred HHHHHHHH
Q psy11547 509 MYGCISLL 516 (587)
Q Consensus 509 ~~~~~~~~ 516 (587)
..+++.++
T Consensus 159 ~~~~~~~~ 166 (355)
T TIGR00896 159 WWALPALL 166 (355)
T ss_pred HHHHHHHH
Confidence 66554433
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >KOG0569|consensus | Back alignment and domain information |
|---|
Probab=98.78 E-value=2.2e-08 Score=99.92 Aligned_cols=144 Identities=19% Similarity=0.146 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHHHHHhHHHhhcccCCchhhHhhhHHHHHHHHHHHHHHHhccCCCCCCCcCccchhHHHHHHHHHHHHHh
Q psy11547 373 LAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAAST 452 (587)
Q Consensus 373 ~~~~~~~~~~~i~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (587)
.....+.+++++|+++.+++.||+|||..+.++.++..++.+++...... ......++.-++.+...+
T Consensus 64 ~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~------------~~~e~li~GR~i~Gl~~g 131 (485)
T KOG0569|consen 64 LIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSA------------PSFEMLILGRLIVGLACG 131 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHh------------hhHHHHHHHHHHHHHHhH
Confidence 34556778999999999999999999999999988888888777765544 223344444444444444
Q ss_pred ccccccceeeeeccCCCCchhhHHHHHHHHHHHHHHHHHHhh-HHHHHh-hhhhhHHHHHHHHHHHHHHHhheecccCCC
Q psy11547 453 IGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSY-NMFQTH-LTKEGTFLMYGCISLLGTIFFYVYLPETKN 530 (587)
Q Consensus 453 ~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~~~~~-g~l~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 530 (587)
...... ..++.|+.|++.||....+......+|..++..++ ..+... ..|...+....+.+++..+ ...++||..+
T Consensus 132 l~~~~~-pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~-~l~~~PESPk 209 (485)
T KOG0569|consen 132 LSTGLV-PMYLTEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLA-LLPFLPESPK 209 (485)
T ss_pred HHHHHH-HHHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHH-HHhcCCCCcc
Confidence 444333 37899999999999999988888888888875543 333322 2355455544444444433 4567787643
|
|
| >KOG2504|consensus | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.5e-08 Score=103.64 Aligned_cols=167 Identities=14% Similarity=0.190 Sum_probs=145.6
Q ss_pred HHHhhhhhhccccccHHHHHhhhcCCCCCccCcchhHHHHHHHHHHHHHHHHhHHHhhhccc--hhHHHHHhhHHHHHHH
Q psy11547 95 ANLGNVNTGMVFGFSAAATSQLISRDSPYRITSDESTWIASLSAIGTMVGCVLGGYMMDLVG--RKMTLIITEVPTILGW 172 (587)
Q Consensus 95 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~i~s~~~l~~~i~~~~~g~l~dr~G--rr~~l~~~~~~~~i~~ 172 (587)
..++..+..+........+|.+... .+.+..+...+.++..+...++.++.|+++|+.. ++.+..+++++.+++.
T Consensus 303 ~~~~~~~~~~g~~~p~~~l~~~~~~---~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~ 379 (509)
T KOG2504|consen 303 LALSNLFAYLGFNVPFVYLPSYAKS---LGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLAR 379 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh---cCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHH
Confidence 3334444445555566677777774 8999999999999999999999999999999998 5667788888889999
Q ss_pred HHHHhcCCCCCCcchhhHHhhhhhhccccccccccceeeeeccCCCcchhHhHHHHHHHHHHHHHHHHhhhhh-----hH
Q psy11547 173 ALIALAPSLPSSILPWIFTGRILTGLGSGMVGAPSRIYTAECSQPHLRGMLSSLASFGVSLGVLFEYSLGAFL-----SW 247 (587)
Q Consensus 173 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l-----~w 247 (587)
+.+.++++++ .++..-.+.|++.|........++.|+...++-..+.|+.....+++.++||++++++ +|
T Consensus 380 ~~~p~~~~~~-----~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y 454 (509)
T KOG2504|consen 380 LFLPFATTYV-----GLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNY 454 (509)
T ss_pred HHHHHhccHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCe
Confidence 9999999999 9999999999999999888888999999999999999999999999999999999988 69
Q ss_pred HHHHHHHHHHHHHHHHHhcccC
Q psy11547 248 DTVAAISTIIPVLSIIAGCLMP 269 (587)
Q Consensus 248 r~~f~~~~~~~~~~~~~~~~~~ 269 (587)
...|++.++..++...+.++.+
T Consensus 455 ~~~f~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 455 DHAFYFCGLCFLLSAVLLLILR 476 (509)
T ss_pred eeehhhcChHHHHHHHHHHHhH
Confidence 9999999999888887776665
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=5.7e-08 Score=99.80 Aligned_cols=126 Identities=21% Similarity=0.235 Sum_probs=99.2
Q ss_pred HHhhhcCCCCCccCcchhHHHHHHHHHHHHHHHHhHHHhhhccchhHHHHHhhHHHHHHHHHHHhcC--CCCCCcchhhH
Q psy11547 113 TSQLISRDSPYRITSDESTWIASLSAIGTMVGCVLGGYMMDLVGRKMTLIITEVPTILGWALIALAP--SLPSSILPWIF 190 (587)
Q Consensus 113 ~~~~~~~~~~~~~s~~~~g~i~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~--~~~~~~~~~l~ 190 (587)
.|.+.++ .+|.+....++......++..++.++++++.||+|+|+++.++.++..++.++..+.+ +++ .++
T Consensus 251 ~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~-----~~~ 323 (448)
T PRK09848 251 SLFYVRY--VLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLP-----VAL 323 (448)
T ss_pred heeeEee--ecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHH-----HHH
Confidence 4444443 3565555555555555778888999999999999999999999999888888777654 334 666
Q ss_pred HhhhhhhccccccccccceeeeeccCCC-------cchhHhHHHHHHHHHHHHHHHHhhhhh
Q psy11547 191 TGRILTGLGSGMVGAPSRIYTAECSQPH-------LRGMLSSLASFGVSLGVLFEYSLGAFL 245 (587)
Q Consensus 191 ~~r~l~G~~~g~~~~~~~~~i~e~~~~~-------~r~~~~~~~~~~~~~G~~i~~~l~~~l 245 (587)
+..++.|+|.+...+...+++.|..+.+ ++|...++++....+|..+|+.+.+.+
T Consensus 324 ~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~ 385 (448)
T PRK09848 324 VALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFI 385 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788999999999999999998888754 358899999999999999998887765
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=98.71 E-value=8.2e-08 Score=93.92 Aligned_cols=168 Identities=11% Similarity=0.108 Sum_probs=132.8
Q ss_pred HHHhhhhhhccccccHHHHHhhhcCCCCCccCcchhHHHHHHHHHHHHHHHHhHHHhhhccchhHHHHHhhHHHHHHHHH
Q psy11547 95 ANLGNVNTGMVFGFSAAATSQLISRDSPYRITSDESTWIASLSAIGTMVGCVLGGYMMDLVGRKMTLIITEVPTILGWAL 174 (587)
Q Consensus 95 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~i~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~ 174 (587)
+....+.+.+|+. .......+.+ +-+.+....|.+.++..+.-++...+..++.+|+|.|+.++++..++++=.++
T Consensus 230 ~g~~~~Y~vfdqq-f~~y~~~~f~---~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~ 305 (412)
T PF01306_consen 230 IGVAAIYDVFDQQ-FPIYFASFFQ---SAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIG 305 (412)
T ss_dssp HHHHHHHHHHHHH-HHHHHHHTSS---SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHHHHHHHhc---ccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHH
Confidence 3344455666654 2223333322 24456677899999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCCCcchhhHHhhhhhhccccccccccceeeeeccCCCcchhHhHH-HHHHHHHHHHHHHHhhhhh----hHHH
Q psy11547 175 IALAPSLPSSILPWIFTGRILTGLGSGMVGAPSRIYTAECSQPHLRGMLSSL-ASFGVSLGVLFEYSLGAFL----SWDT 249 (587)
Q Consensus 175 ~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~-~~~~~~~G~~i~~~l~~~l----~wr~ 249 (587)
++++++.+ .+.+.+.+.|+-.+........|+.+.+|++-.++...+ .+.+.++|.++.+.+++.+ |.+.
T Consensus 306 ~~~~~~~~-----~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~ 380 (412)
T PF01306_consen 306 SGFATNPW-----VISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQH 380 (412)
T ss_dssp HHT--SHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhcchH-----HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHH
Confidence 99999999 999999999999999999999999999998877777766 4688889999999999888 8899
Q ss_pred HHHHHHHHHHHHHHHhcc-cCCC
Q psy11547 250 VAAISTIIPVLSIIAGCL-MPES 271 (587)
Q Consensus 250 ~f~~~~~~~~~~~~~~~~-~~es 271 (587)
.|++.+.+.++..++..+ +++.
T Consensus 381 tylimg~iv~~~~li~~f~l~~~ 403 (412)
T PF01306_consen 381 TYLIMGLIVLPFTLISAFTLKKD 403 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHS--S
T ss_pred HHHHHHHHHHHHHHHheeeecCC
Confidence 999998888877766665 5443
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.70 E-value=1e-07 Score=92.75 Aligned_cols=150 Identities=27% Similarity=0.395 Sum_probs=121.8
Q ss_pred ccccccHHHHHhhhcCCCCCccCc--chhHHHHHHHHHHHHHHHHhHHHhhhccchhHHHHHhhHHHHHHHHHHHhcCC-
Q psy11547 104 MVFGFSAAATSQLISRDSPYRITS--DESTWIASLSAIGTMVGCVLGGYMMDLVGRKMTLIITEVPTILGWALIALAPS- 180 (587)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~s~--~~~g~i~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~- 180 (587)
++........+.+..+ ++.+. .+.+++.+.+.++..++.++.|.++||+|||+.+..+.....++.+++++..+
T Consensus 16 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (338)
T COG0477 16 LDLGLLSPALPLLLST---LSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNV 92 (338)
T ss_pred HhcchHHHHHHHHHHH---cCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCccc
Confidence 5555555666666653 44454 47899999999999999999999999999999998888877777778888877
Q ss_pred -CCCCcchhhHHhhhhhhccccccccccceeeeeccCC-CcchhHhHHHHH-HHHHHHHHHHHhhhhh------hHHHHH
Q psy11547 181 -LPSSILPWIFTGRILTGLGSGMVGAPSRIYTAECSQP-HLRGMLSSLASF-GVSLGVLFEYSLGAFL------SWDTVA 251 (587)
Q Consensus 181 -~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~-~~r~~~~~~~~~-~~~~G~~i~~~l~~~l------~wr~~f 251 (587)
.+ .+++.|+++|++.+...+...+++.|+.|+ ++|+...+.... ...+|.++++.+++.+ +||+.|
T Consensus 93 ~~~-----~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (338)
T COG0477 93 GLA-----LLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAF 167 (338)
T ss_pred hHH-----HHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 55 889999999999999999999999999988 678999898888 5888888888777665 688877
Q ss_pred HHHHHHHHHH
Q psy11547 252 AISTIIPVLS 261 (587)
Q Consensus 252 ~~~~~~~~~~ 261 (587)
.+........
T Consensus 168 ~~~~~~~~~~ 177 (338)
T COG0477 168 LLAALLGLLL 177 (338)
T ss_pred HHHHHHHHHH
Confidence 6666665443
|
|
| >KOG0255|consensus | Back alignment and domain information |
|---|
Probab=98.68 E-value=6.6e-08 Score=101.44 Aligned_cols=141 Identities=14% Similarity=0.092 Sum_probs=110.8
Q ss_pred cchHHHHHHHHHHHHHHHHhHHHhhcccCCchhhHhhhHHHHHHHHHHHHHHHhccCCCCCCCcCccchhHHHHHHHHHH
Q psy11547 369 VNNNLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFT 448 (587)
Q Consensus 369 ~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (587)
.......+++.++.++|.++.|+++||+|||+++.++.++..++.+..++ ...+..+.+.=++.
T Consensus 118 ~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~----------------a~~~~~~~~~Rfl~ 181 (521)
T KOG0255|consen 118 TLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAF----------------APNYWMFLIFRFLS 181 (521)
T ss_pred hHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHH----------------hCcHHHHHHHHHHH
Confidence 34456778888999999999999999999999999999999888877766 23344455555555
Q ss_pred HHHhccccccceeeeeccCCCCchhhHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhHHHHHHHHHHHHHHHhheecccC
Q psy11547 449 AASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLTKEGTFLMYGCISLLGTIFFYVYLPET 528 (587)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (587)
+.+..+.....+.+..|.++++.|+.+..+ ......++.+++...+++.. +|++.+++.....++..++ +++.+|.
T Consensus 182 G~~~~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~~~~~~~~~~~~-~~l~~Es 257 (521)
T KOG0255|consen 182 GFFGSGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFWIISIPSGLFLLL-WFLPPES 257 (521)
T ss_pred HhhccchhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHH-HHccCcC
Confidence 555555566667999999999999999999 88888889999999888887 7888888877777766554 4555564
Q ss_pred C
Q psy11547 529 K 529 (587)
Q Consensus 529 ~ 529 (587)
+
T Consensus 258 ~ 258 (521)
T KOG0255|consen 258 P 258 (521)
T ss_pred h
Confidence 3
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=98.67 E-value=3e-07 Score=93.90 Aligned_cols=113 Identities=22% Similarity=0.234 Sum_probs=102.1
Q ss_pred chhHHHHHHHHHHHHHHHHhHHHhhhccchhHHHHHhhHHHHHHHHHHHhcC--CCCCCcchhhHHhhhhhhcccccccc
Q psy11547 128 DESTWIASLSAIGTMVGCVLGGYMMDLVGRKMTLIITEVPTILGWALIALAP--SLPSSILPWIFTGRILTGLGSGMVGA 205 (587)
Q Consensus 128 ~~~g~i~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~--~~~~~~~~~l~~~r~l~G~~~g~~~~ 205 (587)
...+.+..+..++..++.+++++++||+|+|+++..+.++.+++.++..+.+ +.+ .+++.-++.|++.+..++
T Consensus 260 ~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~i~~~l~gi~~~~~~~ 334 (428)
T PF13347_consen 260 GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGPGSPW-----LVLILFILAGIGYGAFFV 334 (428)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHhhhHH-----HHHHHHHHhHhhhccccc
Confidence 6778888899999999999999999999999999999999999999988886 777 899999999999999999
Q ss_pred ccceeeeeccCC-------CcchhHhHHHHHHHHHHHHHHHHhhhhh
Q psy11547 206 PSRIYTAECSQP-------HLRGMLSSLASFGVSLGVLFEYSLGAFL 245 (587)
Q Consensus 206 ~~~~~i~e~~~~-------~~r~~~~~~~~~~~~~G~~i~~~l~~~l 245 (587)
...++++|..+. ++.|..++......-+|..+++.+.+.+
T Consensus 335 ~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~ 381 (428)
T PF13347_consen 335 IPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLL 381 (428)
T ss_pred ccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence 999999998873 3348889999999999999988877765
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=98.65 E-value=2.9e-07 Score=91.82 Aligned_cols=144 Identities=21% Similarity=0.365 Sum_probs=117.4
Q ss_pred Cc-cCcchhHHHHHHHHHHHHHHHHhHHHhhhccchhHHHHHhhHHHHHHHHHHHhc-CCCCCCcchhhHH----hhhhh
Q psy11547 123 YR-ITSDESTWIASLSAIGTMVGCVLGGYMMDLVGRKMTLIITEVPTILGWALIALA-PSLPSSILPWIFT----GRILT 196 (587)
Q Consensus 123 ~~-~s~~~~g~i~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~-~~~~~~~~~~l~~----~r~l~ 196 (587)
.| .+....+.+.++..++=...-.+.+++..|+|.|++++++.+.+++=..+.+.. ++.+ ...+ ...++
T Consensus 237 ~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~~~~-----~~~~~~~l~q~lh 311 (400)
T PF03825_consen 237 LGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSDPWP-----FIVALQLLGQLLH 311 (400)
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCcH-----HHHHHHHHHHhhh
Confidence 55 566777888888888888999999999999999999999999999988888887 4444 3333 34569
Q ss_pred hccccccccccceeeeeccCCCcchhHhHHHHH-HHHHHHHHHHHhhhhh----------hHHHHHHHHHHHHHHHHHHh
Q psy11547 197 GLGSGMVGAPSRIYTAECSQPHLRGMLSSLASF-GVSLGVLFEYSLGAFL----------SWDTVAAISTIIPVLSIIAG 265 (587)
Q Consensus 197 G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~-~~~~G~~i~~~l~~~l----------~wr~~f~~~~~~~~~~~~~~ 265 (587)
|+..|..+.++..++.+.+|++.|+++.+++.. ..++|..+|..+++++ .|...+.+.+++.++..++.
T Consensus 312 G~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f 391 (400)
T PF03825_consen 312 GLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLF 391 (400)
T ss_pred hHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999876 4689999999999988 35566777777666665555
Q ss_pred cc-cCCC
Q psy11547 266 CL-MPES 271 (587)
Q Consensus 266 ~~-~~es 271 (587)
++ .+|+
T Consensus 392 ~~~fk~~ 398 (400)
T PF03825_consen 392 VILFKPK 398 (400)
T ss_pred HhhccCC
Confidence 44 4443
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.64 E-value=2.3e-07 Score=91.06 Aligned_cols=144 Identities=12% Similarity=0.035 Sum_probs=104.9
Q ss_pred CC-cchHHHHHHHHHHHHHHHHhHHHhhccc-CCchhhHhhhHHHHHHHHHHHHHHHhccCCCCCCCcCccchhHHHHHH
Q psy11547 367 AH-VNNNLAAVIMGIVRLIFTIASCIMMKKM-GRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLML 444 (587)
Q Consensus 367 ~~-~~~~~~~~~~~~~~~i~~~~~g~l~d~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (587)
++ .++......++...-+..+++||++||+ |+|+.+..+.+++.++.++++.... .......+.+
T Consensus 58 ~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~-------------~~~~gl~i~L 124 (498)
T COG3104 58 FDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSV-------------SGPGGLYIGL 124 (498)
T ss_pred cChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhcccc-------------ccccHHHHHH
Confidence 65 3344445555555667788999999996 9999999999999999999987210 1222333333
Q ss_pred HHHHHHHhccccccceeeeeccCCCC--chhhHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhHHHHHHHHHHHHHHHhh
Q psy11547 445 MTFTAASTIGYLVVPWVMIGEVYPTK--VRGIVGGLTTCACHFFIFLTVKSYNMFQTHLTKEGTFLMYGCISLLGTIFFY 522 (587)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~p~~--~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 522 (587)
.+.. .....+-+...+++.|++|++ .|..++++..+..++|+.++|.+.+++.+..||...|...++-..++.+..+
T Consensus 125 ~~I~-iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~ 203 (498)
T COG3104 125 ALII-VGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFL 203 (498)
T ss_pred HHHH-hccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHH
Confidence 3333 333444455558889998864 3677788888889999999999999999999999999988877777766554
Q ss_pred ee
Q psy11547 523 VY 524 (587)
Q Consensus 523 ~~ 524 (587)
+.
T Consensus 204 ~~ 205 (498)
T COG3104 204 LG 205 (498)
T ss_pred Hc
Confidence 43
|
|
| >KOG3574|consensus | Back alignment and domain information |
|---|
Probab=98.62 E-value=3.7e-06 Score=78.95 Aligned_cols=358 Identities=11% Similarity=-0.005 Sum_probs=181.6
Q ss_pred HHHhhhhhhccccccHHHHHhhhcCCCCCccCcchhHHHHHHHHHHHHHHHHhHHHhhh-----ccchhHHHHH-hhHHH
Q psy11547 95 ANLGNVNTGMVFGFSAAATSQLISRDSPYRITSDESTWIASLSAIGTMVGCVLGGYMMD-----LVGRKMTLII-TEVPT 168 (587)
Q Consensus 95 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~i~s~~~l~~~i~~~~~g~l~d-----r~Grr~~l~~-~~~~~ 168 (587)
..+.+..+|...+... .+|.+.+. -|.|.++.+...-++. - ...-++|.++.| |+||||.-++ +..+.
T Consensus 36 Ll~LYllQGiP~GL~~-~iP~lL~a---k~vSyt~~a~fS~ay~-P-~sLKllWaPiVDs~y~k~~GrrksWvvp~q~ll 109 (510)
T KOG3574|consen 36 LLFLYLLQGIPLGLIG-AIPLLLQA---KGVSYTSQAIFSFAYW-P-FSLKLLWAPIVDSVYSKRFGRRKSWVVPCQYLL 109 (510)
T ss_pred HHHHHHHcCCchhHhh-hhHHHhcC---CCcchhhhhhhhhhhh-H-HHHHHHHHhhhHHHHHHhhccccceeeehHHHH
Confidence 3444677899999988 88998874 6778777765433221 1 223468999999 9999876444 65666
Q ss_pred HHHHHHHHhcCCCCCC------cchhhHHhhhhhhccccccccccceeeeeccCCCcchhHhHHHHHHHHHHHHHHHHhh
Q psy11547 169 ILGWALIALAPSLPSS------ILPWIFTGRILTGLGSGMVGAPSRIYTAECSQPHLRGMLSSLASFGVSLGVLFEYSLG 242 (587)
Q Consensus 169 ~i~~~~~~~~~~~~~~------~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~ 242 (587)
+..+++.+...+-+.. ....+...-++.-+..+.--.+.-.+.-.+..+++-|.+......+...|.+++..+-
T Consensus 110 G~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~Vg~~~GyfL~~~if 189 (510)
T KOG3574|consen 110 GLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQSVGQTAGYFLGNVVF 189 (510)
T ss_pred HHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHHHHhhhHHhhccee
Confidence 6666666554443311 0112222335555555566666666666677788888888888888888887777654
Q ss_pred hhh-----------hHH---------HHHHHHHHHHHHHHHHhcccCCCchHHHhcCCHHHHHHHHHHHhCCCcchHHHH
Q psy11547 243 AFL-----------SWD---------TVAAISTIIPVLSIIAGCLMPESPSWLLSQGRKDACRNSLRRLRANNYDVEKEV 302 (587)
Q Consensus 243 ~~l-----------~wr---------~~f~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (587)
-.+ +|. ...++.+.+.++.-.+..+..+++.. +.
T Consensus 190 LaL~s~dF~N~y~rs~P~~~g~ItL~gy~~fwg~~~~vat~Lv~~~kke~~~--------~~------------------ 243 (510)
T KOG3574|consen 190 LALESPDFCNTYLRSIPLDQGFITLAGYLWFWGALFIVATTLVALLKKENDE--------SV------------------ 243 (510)
T ss_pred eEecChhhhhHHHhcCcCccceEEhhHHHHHHHHHHHHHHHHHHHhcCCCch--------hh------------------
Confidence 333 222 22334444444444444333322210 00
Q ss_pred hhHHHHHHHHHHHhhhhhhHhHHhhhcCCchHHHHHHHHHHHHHHhccchhhHhcHHHHHHhcCCCc-chHHHHHHHHHH
Q psy11547 303 QGLYEFSKRQETQKSRNFKETLAAIVEPACLKPFVILMLYFLIYQFSGVNPVTFYAVNIFKDAGAHV-NNNLAAVIMGIV 381 (587)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~ 381 (587)
.++.+...+...+..++.++-+..+....+....-..+ ..-....+.-+.+.|.+. .-+.......-.
T Consensus 244 ------~~e~~~~i~~~yk~l~~vLklk~v~~la~i~lt~K~gf-----~a~da~t~LkLle~Gv~ke~Lal~~v~~~pl 312 (510)
T KOG3574|consen 244 ------DEELELGIHESYKLLRDVLKLKSVRWLAGILLTGKLGF-----QAADALTSLKLLEHGVPKEELALIAVPLVPL 312 (510)
T ss_pred ------hhhhhcCHHHHHHHHHHHHcCccHHHHHHHHHHHHHHh-----hhhhhccchHHHHcCCChhHheeeeeehhhH
Confidence 00000012222344556666555443322222222221 122233344556778772 223333222223
Q ss_pred HHHHHHhHHHhhcccC------CchhhHhhhHHHHHHHHHHHH-HHHhccCCCCCCCcCccchhHHHHHHHHHHHHHhcc
Q psy11547 382 RLIFTIASCIMMKKMG------RRSLTFISSIGCGVSMTGLGL-YIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIG 454 (587)
Q Consensus 382 ~~i~~~~~g~l~d~~g------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (587)
+++.....|.+..... |+....+. .+....++.+ ....... +... ........+....+..++...
T Consensus 313 qI~l~~~~gk~ta~~~pl~~~lka~~~R~~---~~~~~t~Lv~~~~~~~~~---~G~~-~~~~~il~i~~y~~~~~~~ts 385 (510)
T KOG3574|consen 313 QIALPLYIGKWTAGPRPLNVFLKAVPYRLG---GGLVQTALVWWTPTLGHS---DGTF-PRGYYILLITSYAFHQVFVTS 385 (510)
T ss_pred HHhhhhhheeecCCCCcchHHHHhhhHHHH---HHHHHHHHHhhhcccccC---CCce-eechHHHHHHHHHHhhhHHHH
Confidence 3333333333322111 11111211 1111222222 1111010 0000 011122222222232222222
Q ss_pred ccccceeeeeccCCCCchhhHHHHHHHHHHHHHHHHHHhhHHHHHhhh
Q psy11547 455 YLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLT 502 (587)
Q Consensus 455 ~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g 502 (587)
......+..+++.++...|+.+.+.|+..++|+-.-..+...+.|.++
T Consensus 386 ~fv~~maf~aqisdp~iggTymTlLNTLsnLGg~wp~tv~l~l~D~lt 433 (510)
T KOG3574|consen 386 MFVSGMAFHAQISDPAIGGTYMTLLNTLSNLGGNWPGTVALWLADGLT 433 (510)
T ss_pred HHHHHHHHHhhcCCcccCccHHHHHHHHHHhcCCcHHHHHHHhcccCc
Confidence 222233778889999999999999999999999888788888877654
|
|
| >KOG4686|consensus | Back alignment and domain information |
|---|
Probab=98.61 E-value=2.3e-07 Score=83.29 Aligned_cols=168 Identities=13% Similarity=0.052 Sum_probs=119.1
Q ss_pred HHHHHHHHHhhhhhhccccccHHHHHhhhcCCCCCccCcchhHHHHHHHHHHHHHHHHhHHHhhhccchhHHHHHhhHHH
Q psy11547 89 LTLAVFANLGNVNTGMVFGFSAAATSQLISRDSPYRITSDESTWIASLSAIGTMVGCVLGGYMMDLVGRKMTLIITEVPT 168 (587)
Q Consensus 89 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~i~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~ 168 (587)
..+++++|+.+...-+.....++. .+.+ .+|+|+...+.+.+....-.++.+++.|.++||+|++-+.+.+..+.
T Consensus 266 fw~~~iicv~yyva~fPFi~lg~~--fF~~---rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~ 340 (459)
T KOG4686|consen 266 FWVLVIICVLYYVAWFPFITLGPM--FFQK---RFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACIL 340 (459)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHH--HHHH---hhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHH
Confidence 334555555555444444333332 2334 49999999999999999999999999999999999997776655444
Q ss_pred -HHHHHHHHhcCCCCCCcchhhHHhhhhhhccccccccccceeeeeccCCCcchhHhHHHHHHHHHHHHHHHHhhhhh--
Q psy11547 169 -ILGWALIALAPSLPSSILPWIFTGRILTGLGSGMVGAPSRIYTAECSQPHLRGMLSSLASFGVSLGVLFEYSLGAFL-- 245 (587)
Q Consensus 169 -~i~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l-- 245 (587)
.++-....| +++ .=.++..+.|++...........++...|+++.|.+.+..+...++|..+.|++++.+
T Consensus 341 tl~~H~~l~F--t~l-----sPy~~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d 413 (459)
T KOG4686|consen 341 TLLGHSGLFF--TFL-----SPYTSMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIAD 413 (459)
T ss_pred HHHHhhhHHh--hhc-----cHHHHHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeec
Confidence 334344443 333 3456788889887766555677788888999999999999999999999999999998
Q ss_pred -----hH-HHHHHHHHHHHHHHHHHhccc
Q psy11547 246 -----SW-DTVAAISTIIPVLSIIAGCLM 268 (587)
Q Consensus 246 -----~w-r~~f~~~~~~~~~~~~~~~~~ 268 (587)
.| ...|++.+.+++....+.+.+
T Consensus 414 ~~g~y~~le~ffl~~~~~aL~svgil~~~ 442 (459)
T KOG4686|consen 414 GDGSYDNLEAFFLIIGLMALTSVGILFYL 442 (459)
T ss_pred CCCchhhHHHHHHHHHHHHHHHHHHHhhe
Confidence 23 334455555566555555443
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=98.60 E-value=3.5e-05 Score=76.73 Aligned_cols=342 Identities=15% Similarity=0.057 Sum_probs=165.5
Q ss_pred hHHHHHHHHHHHHHHHHhHHHhhhccchhHHHHHhhHHHHHHHHHHH------hcCCCC----CCcchhhHHhhhhhhcc
Q psy11547 130 STWIASLSAIGTMVGCVLGGYMMDLVGRKMTLIITEVPTILGWALIA------LAPSLP----SSILPWIFTGRILTGLG 199 (587)
Q Consensus 130 ~g~i~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~------~~~~~~----~~~~~~l~~~r~l~G~~ 199 (587)
.+...-.-.+...+.++..|.+.||..|.+++..+++..-++..+.+ +..... ......+++.-.+.|.-
T Consensus 40 ~siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i 119 (432)
T PF06963_consen 40 VSIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVAASCALFLLLLSYPSSSSQSSWLFIALFALLILLGAI 119 (432)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHH
Confidence 34444455667778888999999999999998888766433322222 111110 00011222222222221
Q ss_pred cc-ccccccceeeeeccC------CCcchhHhHHHHHHHHHHHHHHHHhhhhh----hHHHHHHHHHHHHHHHHHHhcc-
Q psy11547 200 SG-MVGAPSRIYTAECSQ------PHLRGMLSSLASFGVSLGVLFEYSLGAFL----SWDTVAAISTIIPVLSIIAGCL- 267 (587)
Q Consensus 200 ~g-~~~~~~~~~i~e~~~------~~~r~~~~~~~~~~~~~G~~i~~~l~~~l----~wr~~f~~~~~~~~~~~~~~~~- 267 (587)
.- .......++=.||.. +..+.+.++...-.--+..+++|++.+.+ +.+....+.++..++.++.=++
T Consensus 120 ~~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ckllaPl~vG~l~t~~s~~~~~~~i~~~N~~S~~vEy~~ 199 (432)
T PF06963_consen 120 ERLASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCKLLAPLFVGLLMTFASPVIAAIFIAGWNLASVFVEYFL 199 (432)
T ss_pred HHHHHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 111222233345543 33456667777667778888999888887 6666666666666655544222
Q ss_pred ---c-CCCchHHHhcCCHHHHHHHHHHHhCCCcchHHHHhhHHHHHHHHHHHhhhhhhHhHHhhhcCCchHHHHHHHHHH
Q psy11547 268 ---M-PESPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQGLYEFSKRQETQKSRNFKETLAAIVEPACLKPFVILMLYF 343 (587)
Q Consensus 268 ---~-~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (587)
+ ...|. +..+++.++.......-... .........+...+.-+.....+...++++.+. ..+...+++
T Consensus 200 l~~VY~~~P~-L~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~w~~Y~~q~vfl-as~alalLY 271 (432)
T PF06963_consen 200 LARVYNSVPA-LAVKKRSSESESSSDEESSS------ESSSDPSILKRLWNPLRTIIRGWRTYFRQPVFL-ASFALALLY 271 (432)
T ss_pred HHHHHHhChH-hcCCCCCccccccccccccc------cccchhhHHHHHHHHHHHHhccHHHHHhCHHHH-HHHHHHHHH
Confidence 1 12221 21111111100000000000 000000000000000011112223333333222 222222222
Q ss_pred HHHHhccchhhHhcHHHHHHhcCCC-cchHHHHHHHHHHHHHHHHhHHHhhcccCCchhhHhhhHHHHHHHHHHHHHHHh
Q psy11547 344 LIYQFSGVNPVTFYAVNIFKDAGAH-VNNNLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFA 422 (587)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (587)
+. ...+......|+...|++ ...+..-....+.++.+.++..++.+|+|..+.=.++......++.+.......
T Consensus 272 ~T-----VLsf~~lmt~yl~~~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~ 346 (432)
T PF06963_consen 272 FT-----VLSFGGLMTAYLKSQGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWA 346 (432)
T ss_pred HH-----HhcCcHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhc
Confidence 22 111233444556667887 455677777888899999999999999998777666666554444443333333
Q ss_pred ccCCCCCCCcCccchhHHHHHHHHHHHHHhccccccceeeeeccCCCCchhhHHHHHHHHHHHHHHHH
Q psy11547 423 TKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLT 490 (587)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~ 490 (587)
+.++. .......++......=.+--++--...-+++|..|++.||...|+-+..+++...+.
T Consensus 347 ~~~~~------~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~ 408 (432)
T PF06963_consen 347 PGSPF------SSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLS 408 (432)
T ss_pred CCCCc------hhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHH
Confidence 11100 001111111111111111111212223678899999999999999999988766544
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=98.55 E-value=7.3e-07 Score=86.80 Aligned_cols=132 Identities=17% Similarity=0.142 Sum_probs=96.2
Q ss_pred hHHHHHHHHHHHHHHHHhHHHhhhccchhHHHHHhhHHHHHHHHHHHhcCCCCCCcchhhHHhhhhhhccccccccccce
Q psy11547 130 STWIASLSAIGTMVGCVLGGYMMDLVGRKMTLIITEVPTILGWALIALAPSLPSSILPWIFTGRILTGLGSGMVGAPSRI 209 (587)
Q Consensus 130 ~g~i~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~ 209 (587)
.+.+.-+-.+...+.-+.+-+..+|+..+.=+.+..+++.++.++.+++++.+ .=+++-++.+++.|........
T Consensus 61 t~~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~v~-----~~l~Gv~las~ssg~GE~tfL~ 135 (402)
T PF02487_consen 61 TGAVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPSVW-----VRLLGVVLASLSSGLGEVTFLS 135 (402)
T ss_pred chHHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccchh-----HHHHHHHHHhhhhhhhHHHHHH
Confidence 34556666667777778888889998765555566668888999999999998 8888999999999888877777
Q ss_pred eeeeccCCCcchhHhHHHHHHHHHHHHHHHHhhhhh-----hHHHHHHHHHHHHHHHHHHhcc-cCCC
Q psy11547 210 YTAECSQPHLRGMLSSLASFGVSLGVLFEYSLGAFL-----SWDTVAAISTIIPVLSIIAGCL-MPES 271 (587)
Q Consensus 210 ~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l-----~wr~~f~~~~~~~~~~~~~~~~-~~es 271 (587)
+.. .+++ ...+-+..+.+.+.++|+..-..+ +-|..+++..++.++..+..++ +|.+
T Consensus 136 lt~-~y~~----~~l~~wssGTG~aGl~Ga~~y~~lT~~g~s~~~tll~~~~lp~~~~~~~f~~L~~~ 198 (402)
T PF02487_consen 136 LTH-FYGK----SSLSAWSSGTGGAGLVGALYYLGLTTLGLSPRTTLLIMLVLPAIFLLSYFFLLPSP 198 (402)
T ss_pred HHH-hcCc----cccccccCCcChhhHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 644 4543 356777788888888887655544 4577888877777666555555 5543
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=8.6e-07 Score=91.63 Aligned_cols=115 Identities=15% Similarity=0.165 Sum_probs=91.2
Q ss_pred CcchhHHHHHHHHHHHHHHHHhHHHhhhccchhHHHHHhhHHHHHHHHHHHhc-----CCCCCCcchhhHHhhhhhhccc
Q psy11547 126 TSDESTWIASLSAIGTMVGCVLGGYMMDLVGRKMTLIITEVPTILGWALIALA-----PSLPSSILPWIFTGRILTGLGS 200 (587)
Q Consensus 126 s~~~~g~i~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~-----~~~~~~~~~~l~~~r~l~G~~~ 200 (587)
+....+++.++..++..++.+++++++||+|+|+++.++.++..++.+...+. .+.+ .+++.-++.|++.
T Consensus 264 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~i~~~l~g~~~ 338 (473)
T PRK10429 264 DADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNAL-----LIVIAGILLNIGT 338 (473)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHH-----HHHHHHHHHHHHH
Confidence 44566777777788999999999999999999999998888777666555431 2233 6667778899999
Q ss_pred cccccccceeeeeccC-------CCcchhHhHHHHHHHHHHHHHHHHhhhhh
Q psy11547 201 GMVGAPSRIYTAECSQ-------PHLRGMLSSLASFGVSLGVLFEYSLGAFL 245 (587)
Q Consensus 201 g~~~~~~~~~i~e~~~-------~~~r~~~~~~~~~~~~~G~~i~~~l~~~l 245 (587)
+...+...+++.|..+ +++.|..++......-+|..+++.+.+++
T Consensus 339 ~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~ 390 (473)
T PRK10429 339 ALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVV 390 (473)
T ss_pred HHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999866 23346688999998889999998888775
|
|
| >KOG2533|consensus | Back alignment and domain information |
|---|
Probab=98.50 E-value=7.6e-07 Score=90.26 Aligned_cols=145 Identities=14% Similarity=0.076 Sum_probs=108.8
Q ss_pred chHHHHHHHHHHHHHHHHhHHHhhcccCCchhhHhhhHHHHHHHHHHHHHHHhccCCCCCCCcCccchhHHHHHHHHHHH
Q psy11547 370 NNNLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTA 449 (587)
Q Consensus 370 ~~~~~~~~~~~~~~i~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (587)
+-+...+++.++.+++.+.++.+.||++-.+.+....++.++..++-.. ..+...++.+-++.+
T Consensus 82 ~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~----------------~~s~~~~ialr~llG 145 (495)
T KOG2533|consen 82 QLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAA----------------VHSFPGLIALRFLLG 145 (495)
T ss_pred hhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHH----------------HhhhHHHHHHHHHHH
Confidence 3457788889999999999999999999555554444443333322222 123344445555555
Q ss_pred HHhccccccceeeeeccCCCCchhhHHHHHHHHHHHHHHHHHHhhHHHH------HhhhhhhHHHHHHHHHHHHHHHhhe
Q psy11547 450 ASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQ------THLTKEGTFLMYGCISLLGTIFFYV 523 (587)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~------~~~g~~~~~~~~~~~~~~~~~~~~~ 523 (587)
.+..+..|....++...+.++.|+..+|+.++...+|+++|+.+...+. ...||++.|++-+++.++..+++++
T Consensus 146 l~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~ 225 (495)
T KOG2533|consen 146 LFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFF 225 (495)
T ss_pred HHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEE
Confidence 5555556666689999999999999999999999999999999887764 3468999999999999999999888
Q ss_pred ecccCCC
Q psy11547 524 YLPETKN 530 (587)
Q Consensus 524 ~~~~~~~ 530 (587)
++|+...
T Consensus 226 ~lp~~P~ 232 (495)
T KOG2533|consen 226 FLPDNPS 232 (495)
T ss_pred EecCChh
Confidence 8887544
|
|
| >KOG0254|consensus | Back alignment and domain information |
|---|
Probab=98.48 E-value=1e-06 Score=92.02 Aligned_cols=139 Identities=15% Similarity=0.134 Sum_probs=106.6
Q ss_pred HHHHHHHHHHHHHHHHhHHHhhcccCCchhhHhhhHHHHHHHHHHHHHHHhccCCCCCCCcCccchhHHHHHHHHHHHHH
Q psy11547 372 NLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAAS 451 (587)
Q Consensus 372 ~~~~~~~~~~~~i~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (587)
.+......++..++.++.|+++|++|||+.+.++.+...++.++.+. ..+.....+.-++.+.+.
T Consensus 92 s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~---------------a~~~~~l~~GR~l~G~g~ 156 (513)
T KOG0254|consen 92 GLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIAL---------------APSWYQLIVGRILTGLGV 156 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH---------------hhhHHHHHHHHHHhccch
Confidence 57888899999999999999999999999999999999999988887 233344455555555555
Q ss_pred hccccccceeeeeccCCCCchhhHHHHHHHHHHHHHHHHHHhhHHHHHhh--hhhhHHHHHHHHHHHHHHHhheecccC
Q psy11547 452 TIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHL--TKEGTFLMYGCISLLGTIFFYVYLPET 528 (587)
Q Consensus 452 ~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (587)
+...... ..+++|+.|++.||...+..+....+|..++ .+.+....+. +|+..+.+..+.+++..+. .++.||.
T Consensus 157 G~~~~~~-piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~-~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~-~~~~pes 232 (513)
T KOG0254|consen 157 GGASVLA-PVYISEIAPAHIRGTLVSLYQLFITIGILLG-YCINYGTSKVYAGWRIPLGLALIPAVILALG-MLFLPES 232 (513)
T ss_pred hhhhhcc-hhhHhhcCChhhhHHHHHHHHHHHHHHHHHH-HHHhhhhccCCccHHHHHHHHHHHHHHHHHH-HHhCCCC
Confidence 5444444 4899999999999999999998888777777 5555555543 7887777766666666665 6667764
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.48 E-value=6.6e-06 Score=78.57 Aligned_cols=134 Identities=8% Similarity=-0.042 Sum_probs=100.9
Q ss_pred hhhHhcHHHHHHhcCCC-cchHHHHHHHHHHHHHHHHhHHHhhcccCCchhhHhhhHHHHHHHHHHHHHHHhccCCCCCC
Q psy11547 352 NPVTFYAVNIFKDAGAH-VNNNLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEY 430 (587)
Q Consensus 352 ~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (587)
.......|.+.+..+.+ .+++........+..++++..+++.+|+|+|+-++.+..++++++.++.-....
T Consensus 30 ~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~~-------- 101 (422)
T COG0738 30 CLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASS-------- 101 (422)
T ss_pred hcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhh--------
Confidence 33455667777777787 677788888888999999999999999999999999999999998887642222
Q ss_pred CcCccchhHHH-HHHHHHHHHHhccccccceeeeeccCCCCchhhHHHHHHHHHHHHHHHHHHhhHHHHH
Q psy11547 431 KFPAFVSYLPV-LMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQT 499 (587)
Q Consensus 431 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~ 499 (587)
..+..+ ..+++.+.+.+. .....+.++..+.+++..+.-+.+...++.+|++++|.+.+.+..
T Consensus 102 -----~~y~~FL~~lFila~Gi~~-LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lil 165 (422)
T COG0738 102 -----KSYGFFLVALFILASGIGL-LETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLIL 165 (422)
T ss_pred -----hhHHHHHHHHHHHHhhhHH-HHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 222222 222333333322 234445888899998888888999999999999999999998887
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=98.47 E-value=5.9e-07 Score=92.27 Aligned_cols=149 Identities=13% Similarity=0.058 Sum_probs=117.0
Q ss_pred CCccCcchhHHHHHHHHHHHHHHHHhHHHhhhccchhHHHHHhhHHHHHHHHHHHhcCCCCC-----CcchhhHHhhhhh
Q psy11547 122 PYRITSDESTWIASLSAIGTMVGCVLGGYMMDLVGRKMTLIITEVPTILGWALIALAPSLPS-----SILPWIFTGRILT 196 (587)
Q Consensus 122 ~~~~s~~~~g~i~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~-----~~~~~l~~~r~l~ 196 (587)
.+|.++.+.|.+.....++..++....+++.+|++.|+++.++.++.+++.+...+..+.+. ...+.++..-++.
T Consensus 282 ~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l~ 361 (468)
T TIGR00788 282 CLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSIIA 361 (468)
T ss_pred cCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHHH
Confidence 58999999999999999999999999999999999999999999999988866542211110 0011556678889
Q ss_pred hccccccccccceeeeeccCCCcchhHhHHHHHHHHHHHHHHHHhhhhh----h-----HHHHHH---HHHHHHHHHHHH
Q psy11547 197 GLGSGMVGAPSRIYTAECSQPHLRGMLSSLASFGVSLGVLFEYSLGAFL----S-----WDTVAA---ISTIIPVLSIIA 264 (587)
Q Consensus 197 G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l----~-----wr~~f~---~~~~~~~~~~~~ 264 (587)
+++.+..+.+...++.+..|++++|...++.....++|..+++.+++.+ | ++..+. +..+..++.+.+
T Consensus 362 ~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~~~~~~~~~~~i~i~~~~~l~~l~~ 441 (468)
T TIGR00788 362 EVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIGITCDNSNNLWLLILGHSLAPLLPLPL 441 (468)
T ss_pred HHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999988887 2 332332 233444444444
Q ss_pred hcccCC
Q psy11547 265 GCLMPE 270 (587)
Q Consensus 265 ~~~~~e 270 (587)
.+++|+
T Consensus 442 ~~llP~ 447 (468)
T TIGR00788 442 LHLLPR 447 (468)
T ss_pred HHhCCC
Confidence 556885
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >KOG4332|consensus | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.1e-06 Score=78.25 Aligned_cols=87 Identities=18% Similarity=0.242 Sum_probs=67.1
Q ss_pred CccCcchhHHHHHHHHHHHHHHHHhHHHhhhccchhHHHHHhhHHHHHHHHHHHhcCCCCCCcchhhHHhhhhhhccccc
Q psy11547 123 YRITSDESTWIASLSAIGTMVGCVLGGYMMDLVGRKMTLIITEVPTILGWALIALAPSLPSSILPWIFTGRILTGLGSGM 202 (587)
Q Consensus 123 ~~~s~~~~g~i~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~ 202 (587)
++....++|.+.-...-...+...+.|.++|+-|||+.-..-++.+.++++ .-.++.|- .++++|.+-|++.+.
T Consensus 67 YgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsCi-TKhSpqYk-----VLmVGR~LGGiaTsL 140 (454)
T KOG4332|consen 67 YGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSCI-TKHSPQYK-----VLMVGRVLGGIATSL 140 (454)
T ss_pred cCccCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHHH-hhcCCceE-----EEeehhhhhhHHHHH
Confidence 777888999988888888888999999999999999975555554444432 23456777 899999999999988
Q ss_pred ccccccee-eeecc
Q psy11547 203 VGAPSRIY-TAECS 215 (587)
Q Consensus 203 ~~~~~~~~-i~e~~ 215 (587)
.+.+--++ +.|..
T Consensus 141 LFSaFEsWliaEHn 154 (454)
T KOG4332|consen 141 LFSAFESWLIAEHN 154 (454)
T ss_pred HHHHHHHHHHHHhh
Confidence 88776665 45544
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.4e-06 Score=89.47 Aligned_cols=112 Identities=18% Similarity=0.200 Sum_probs=88.0
Q ss_pred hhHHHHHHHHHHHHHHHHhHHHhhhccchhHHHHHhhHHHHHHHHHHHhc--CCCCCCcchhhHHhhhhhhccccccccc
Q psy11547 129 ESTWIASLSAIGTMVGCVLGGYMMDLVGRKMTLIITEVPTILGWALIALA--PSLPSSILPWIFTGRILTGLGSGMVGAP 206 (587)
Q Consensus 129 ~~g~i~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~--~~~~~~~~~~l~~~r~l~G~~~g~~~~~ 206 (587)
..+.+.....++..++.+++++++||+|+|+.+.++.++.+++.+...+. ++.+ .+++..++.|++.+...+.
T Consensus 265 ~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~g~~~~~~~~~ 339 (444)
T PRK09669 265 LATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVW-----LIFALNILFNFIQNLTTPL 339 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHH-----HHHHHHHHHHHHHHHHHHH
Confidence 44556667778888999999999999999999998887766554433332 3444 6777889999999999999
Q ss_pred cceeeeeccCC-------CcchhHhHHHHHHHHHHHHHHHHhhhhh
Q psy11547 207 SRIYTAECSQP-------HLRGMLSSLASFGVSLGVLFEYSLGAFL 245 (587)
Q Consensus 207 ~~~~i~e~~~~-------~~r~~~~~~~~~~~~~G~~i~~~l~~~l 245 (587)
..++++|..+. +..|...+.......+|..+|+.+++.+
T Consensus 340 ~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~l 385 (444)
T PRK09669 340 QWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWI 385 (444)
T ss_pred HHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988752 2246678888888899999999888776
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.45 E-value=2.4e-06 Score=78.19 Aligned_cols=143 Identities=14% Similarity=0.121 Sum_probs=96.9
Q ss_pred HHhccchhhHhcHHHHHHhcCCC-cchHHHHHHHHHHHHHHHHhHHHhhcccCCchhhHhhhHHHHHHHHHHHHHHHhcc
Q psy11547 346 YQFSGVNPVTFYAVNIFKDAGAH-VNNNLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATK 424 (587)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (587)
......+.+..|.|.+.++.+++ .+.........++..+ .++.|.+.|++|.+.++.++.+...++..++...... .
T Consensus 13 ~~~Gt~Y~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~-~ 90 (250)
T PF06813_consen 13 LCSGTTYTFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSG-R 90 (250)
T ss_pred HhcCcccchhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhC-c
Confidence 33445677889999999999998 4445556666666655 5888999999999999999999999998887765443 1
Q ss_pred CCCCCCCcCccchhHHHHHHHHHHHHHhccc-cccceeeeeccCCCCchhhHHHHHHHHHHHHHHHHHHhhHHHHHh
Q psy11547 425 DFWPEYKFPAFVSYLPVLMLMTFTAASTIGY-LVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTH 500 (587)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~ 500 (587)
- ...+. +...++.+.++.+..+ .........+.|| +.||++.|+.-....+++++...+...+...
T Consensus 91 i--------~~~~~-~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~~ 157 (250)
T PF06813_consen 91 I--------PSLPV-WLMCLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFGD 157 (250)
T ss_pred c--------Cccch-HHHHHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcCC
Confidence 0 01122 2222322333333222 2222233447788 5799999999999999999988887776654
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.45 E-value=3.2e-06 Score=79.43 Aligned_cols=167 Identities=18% Similarity=0.184 Sum_probs=130.8
Q ss_pred HHHHHHHHHHhhhhhhccccccHHHHHhhhcCCCCCccCcchhHHHHHHHHHHHHHHHHhHHHhhhcc-chhHHHHHhhH
Q psy11547 88 SLTLAVFANLGNVNTGMVFGFSAAATSQLISRDSPYRITSDESTWIASLSAIGTMVGCVLGGYMMDLV-GRKMTLIITEV 166 (587)
Q Consensus 88 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~i~s~~~l~~~i~~~~~g~l~dr~-Grr~~l~~~~~ 166 (587)
.|.+.+...+-++...... .=+|.+..| -|+|..+.|++.+...+.....++..-.+++|. .+|+......+
T Consensus 210 aW~vtLfmGlqS~~~Y~~~----~WLP~ili~---~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~ 282 (395)
T COG2807 210 AWQVTLFMGLQSLLYYIVI----GWLPAILID---RGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALL 282 (395)
T ss_pred hHHHHHHHHhhHHHHHHHH----HHHHHHHHH---cCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHH
Confidence 5556666666555554444 345666664 899999999999999999999999999999976 57888888888
Q ss_pred HHHHHHHHHHhcCCCCCCcchhhHHhhhhhhccccccccccceeeeeccCCC-cchhHhHHHHHHHHHHHHHHHHhhhhh
Q psy11547 167 PTILGWALIALAPSLPSSILPWIFTGRILTGLGSGMVGAPSRIYTAECSQPH-LRGMLSSLASFGVSLGVLFEYSLGAFL 245 (587)
Q Consensus 167 ~~~i~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~-~r~~~~~~~~~~~~~G~~i~~~l~~~l 245 (587)
++.++.+.+.+.+.-. .+..-++.|+|.|..++.+..++.+-.+.. +-++..++.|....+=..+||.+.+++
T Consensus 283 ~~l~G~~G~~~~P~~~------~~lw~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~l 356 (395)
T COG2807 283 LMLVGLVGLLLAPGQL------PILWALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFL 356 (395)
T ss_pred HHHHHHHHHHHhhhhH------HHHHHHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHH
Confidence 8888888888888754 333369999999999999999998877544 346667777777777778889999988
Q ss_pred -----hHHHHHHHHHHHHHHHHHHhcc
Q psy11547 246 -----SWDTVAAISTIIPVLSIIAGCL 267 (587)
Q Consensus 246 -----~wr~~f~~~~~~~~~~~~~~~~ 267 (587)
+|+..+...+...++..+.-+.
T Consensus 357 hDa~gsw~~~~~~l~~~~i~m~i~Gl~ 383 (395)
T COG2807 357 HDATGSWSAPLVLLALATLLMLIFGLR 383 (395)
T ss_pred HHhcCChHHHHHHHHHHHHHHHHHHhh
Confidence 8999998888877776665543
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=98.40 E-value=9.2e-05 Score=74.65 Aligned_cols=120 Identities=9% Similarity=0.064 Sum_probs=85.7
Q ss_pred CcchhHHHHHHHHHHHHHH-HHhHHHhhhccchhHHHHHhhHHHHHHHHHHHhc--CCCCCCc-----------------
Q psy11547 126 TSDESTWIASLSAIGTMVG-CVLGGYMMDLVGRKMTLIITEVPTILGWALIALA--PSLPSSI----------------- 185 (587)
Q Consensus 126 s~~~~g~i~s~~~l~~~i~-~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~--~~~~~~~----------------- 185 (587)
....+.++.+...+..++. .++.+++++|++|++++-+....+....+++++. ++-...+
T Consensus 41 gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~ 120 (472)
T TIGR00769 41 GAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFM 120 (472)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhH
Confidence 3357899999888877777 8999999999999999988888887777776665 1111000
Q ss_pred -------chhhHHhhhhhhcccccccc-ccceeeeeccCCCcchhHhHHHHHHHHHHHHHHHHhhhhh
Q psy11547 186 -------LPWIFTGRILTGLGSGMVGA-PSRIYTAECSQPHLRGMLSSLASFGVSLGVLFEYSLGAFL 245 (587)
Q Consensus 186 -------~~~l~~~r~l~G~~~g~~~~-~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l 245 (587)
.|...+.-+...+-...... .-..++.|.++.+|-.|..+++..+.++|.++++.+..++
T Consensus 121 ~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~ 188 (472)
T TIGR00769 121 GFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYF 188 (472)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01111222222332223333 5667788999999999999999999999999999888776
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=98.40 E-value=9.1e-07 Score=64.94 Aligned_cols=77 Identities=19% Similarity=0.188 Sum_probs=71.7
Q ss_pred hccccccHHHHHhhhcCCCCCccCcchhHHHHHHHHHHHHHHHHhHHHhhhccchhHHHHHhhHHHHHHHHHHHhcCCCC
Q psy11547 103 GMVFGFSAAATSQLISRDSPYRITSDESTWIASLSAIGTMVGCVLGGYMMDLVGRKMTLIITEVPTILGWALIALAPSLP 182 (587)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~i~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~ 182 (587)
|+.+...+|.+|.++++ .++|.++.|++.+..++||.+|.+...++.++..+++.+..+++...+..+.+++.++++
T Consensus 5 GigRFayTplLP~M~~~---~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~~~ 81 (85)
T PF06779_consen 5 GIGRFAYTPLLPLMQAD---GGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHSFW 81 (85)
T ss_pred hhHHHHHHhHhHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhchH
Confidence 56666778999999996 999999999999999999999999999999999999999999999999999999998876
|
Note that many members are hypothetical proteins. |
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.39 E-value=7.3e-06 Score=81.33 Aligned_cols=129 Identities=17% Similarity=0.253 Sum_probs=102.7
Q ss_pred HHHHHhhhcCCCCCccCcchhHHHHHHHHHHHHHHHHhHHHhhhccchhHHHHHhhHHHHHHHHHHHhcC--CCCCCcch
Q psy11547 110 AAATSQLISRDSPYRITSDESTWIASLSAIGTMVGCVLGGYMMDLVGRKMTLIITEVPTILGWALIALAP--SLPSSILP 187 (587)
Q Consensus 110 ~~~~~~~~~~~~~~~~s~~~~g~i~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~--~~~~~~~~ 187 (587)
+.....+... -+|.++.+..+.......+..++.+++.++.+|+|+|+++..+.++..++.++..+.+ +..
T Consensus 256 ~s~~~yy~~y--~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~~~~~----- 328 (467)
T COG2211 256 GSIMVYYVTY--VLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGSVV----- 328 (467)
T ss_pred hhhhheeEEE--EcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcCcchH-----
Confidence 3444444442 2455566677788888888888899999999999999999999999999999999887 444
Q ss_pred hhHHhhhhhhccccccccccceeeeeccCC-------CcchhHhHHHHHHHHHHHHHHHHhhhhh
Q psy11547 188 WIFTGRILTGLGSGMVGAPSRIYTAECSQP-------HLRGMLSSLASFGVSLGVLFEYSLGAFL 245 (587)
Q Consensus 188 ~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~-------~~r~~~~~~~~~~~~~G~~i~~~l~~~l 245 (587)
.+++..++.++|.+...+...++++|..+- +.-|...+......=+|..++..+.++.
T Consensus 329 l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~ 393 (467)
T COG2211 329 LIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWI 393 (467)
T ss_pred HHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788889999999999999999999987752 2237778888777778888887766665
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.9e-05 Score=76.23 Aligned_cols=139 Identities=21% Similarity=0.318 Sum_probs=117.9
Q ss_pred CCccCcchhHHHHHHHHHHHHHHHHhHHHhhh-ccchhHHHHHhhHHHHHHHHHHHhc---CCCCCCcchhhHHhhhhhh
Q psy11547 122 PYRITSDESTWIASLSAIGTMVGCVLGGYMMD-LVGRKMTLIITEVPTILGWALIALA---PSLPSSILPWIFTGRILTG 197 (587)
Q Consensus 122 ~~~~s~~~~g~i~s~~~l~~~i~~~~~g~l~d-r~Grr~~l~~~~~~~~i~~~~~~~~---~~~~~~~~~~l~~~r~l~G 197 (587)
-||++..|..-++.....|..++....|++.. |.++|++-.+++.+..++..+..++ .+.+ .+...-++.|
T Consensus 238 Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~-----~~~~~~~l~G 312 (403)
T PF03209_consen 238 VFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPW-----LFRPGVFLLG 312 (403)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccch-----HHHHHHHHHH
Confidence 38999999999999999999999999999988 6788888888888887777665544 4555 8889999999
Q ss_pred ccccccccccceeeeeccCCCcchhHhHHHHHHHHHHHHHHHHhhhhh--------------hHHHHHHHHHHHHHHHHH
Q psy11547 198 LGSGMVGAPSRIYTAECSQPHLRGMLSSLASFGVSLGVLFEYSLGAFL--------------SWDTVAAISTIIPVLSII 263 (587)
Q Consensus 198 ~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l--------------~wr~~f~~~~~~~~~~~~ 263 (587)
++.|.......+.+.+...+++.|..+|.+.....++.-++..+++.+ +|-.+|.+.++..++.++
T Consensus 313 ~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~ 392 (403)
T PF03209_consen 313 LGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAALV 392 (403)
T ss_pred HhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999888888888876 466777777776666655
Q ss_pred Hh
Q psy11547 264 AG 265 (587)
Q Consensus 264 ~~ 265 (587)
+.
T Consensus 393 ll 394 (403)
T PF03209_consen 393 LL 394 (403)
T ss_pred HH
Confidence 54
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=98.36 E-value=9.6e-09 Score=105.85 Aligned_cols=144 Identities=16% Similarity=0.097 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHHHHHHhHHHhhcccCCchhhHhhhHHHHHHHHHHHHHHHhccCCCCCCCcCccchhHHHHHHHHHHHHH
Q psy11547 372 NLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAAS 451 (587)
Q Consensus 372 ~~~~~~~~~~~~i~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (587)
........++.++|+++.|++.||+|||+.+.++.++..++.++..+.... .+.+...+.-++.+.+.
T Consensus 49 ~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~~~------------~~~~~~~~~R~~~G~~~ 116 (451)
T PF00083_consen 49 SLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFAPSY------------NNFWMLLIGRFLIGFGI 116 (451)
T ss_pred HHHHHHHHhhhcccccccccccccccccccccccccccccccccccccccc------------ccccccccccccccccc
Confidence 456677888999999999999999999999999999988888877761100 02333333334444444
Q ss_pred hccccccceeeeeccCCCCchhhHHHHHHHHHHHHHHHHHHhhHHHHHh---hhhhhHHHHHHHHHHHHHHHhheecccC
Q psy11547 452 TIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTH---LTKEGTFLMYGCISLLGTIFFYVYLPET 528 (587)
Q Consensus 452 ~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (587)
+. ..+....++.|..|++.|+...++.+....+|..++..+.-.+.+. .+|+..+.+.++..++..+ ...++||.
T Consensus 117 g~-~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~-~~~~~pES 194 (451)
T PF00083_consen 117 GG-AYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVLL-LRFFLPES 194 (451)
T ss_pred cc-cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccc
Confidence 33 3445569999999999999999998888888877776654333222 3477666665555544433 44667775
Q ss_pred C
Q psy11547 529 K 529 (587)
Q Consensus 529 ~ 529 (587)
.
T Consensus 195 P 195 (451)
T PF00083_consen 195 P 195 (451)
T ss_pred c
Confidence 3
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >KOG2816|consensus | Back alignment and domain information |
|---|
Probab=98.35 E-value=9.9e-06 Score=81.65 Aligned_cols=137 Identities=15% Similarity=0.238 Sum_probs=109.1
Q ss_pred HHHHHHHHHHhHHHhhcccCCchhhHhhhHHHHHHHHHHHHHHHhccCCCCCCCcCccchhHHHHHHHHHHHHHhccccc
Q psy11547 378 MGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLV 457 (587)
Q Consensus 378 ~~~~~~i~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (587)
.++..++.++..|.++||+|||..+....+...+..+++.+ ..|+.++ ..-+.+++.. ...
T Consensus 71 ~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~-----------------~~~~~~~-~~~l~g~~~~-~~s 131 (463)
T KOG2816|consen 71 AGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLF-----------------QGYWFFL-LLGLSGGFSA-IFS 131 (463)
T ss_pred hHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHH-----------------HHHHHhh-hcccccchhh-hhh
Confidence 46778888999999999999999999888888777777666 1122222 2222222222 234
Q ss_pred cceeeeeccCCCCchhhHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhHHHHHHHHHHHHHHHhheecccCCCCCH
Q psy11547 458 VPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLTKEGTFLMYGCISLLGTIFFYVYLPETKNKTL 533 (587)
Q Consensus 458 ~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 (587)
..++++++....+.|....|+.+.....+..++|.+.+.+.+..|...+|.+..+..++..+...+++||+...+.
T Consensus 132 ~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~ 207 (463)
T KOG2816|consen 132 VGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEKE 207 (463)
T ss_pred hhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCccc
Confidence 4469999999999999999999999999999999999999999999999999999999999888888898765543
|
|
| >KOG2325|consensus | Back alignment and domain information |
|---|
Probab=98.18 E-value=1.7e-05 Score=78.89 Aligned_cols=159 Identities=11% Similarity=0.060 Sum_probs=105.5
Q ss_pred HHHHh--cCCC-cchHHHHHHHHHHHHHHHHhHHHhhcccCC-chhhHhhhHHHHHHHHHHHHHHHhccCCCCCCCcCcc
Q psy11547 360 NIFKD--AGAH-VNNNLAAVIMGIVRLIFTIASCIMMKKMGR-RSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAF 435 (587)
Q Consensus 360 ~~~~~--~g~~-~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (587)
.|+++ .+.+ ..-++......++..+++++.|+...|.+. |+.++.+.++++++.++....... .
T Consensus 59 pYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~-----------~- 126 (488)
T KOG2325|consen 59 PYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYV-----------P- 126 (488)
T ss_pred hhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhc-----------c-
Confidence 34455 3333 334677777889999999999999999986 888889999999999988665544 1
Q ss_pred chhHHHHHHHHHHHHHhccccccceeeeeccCCCCchhhHHHHHHHHHHHHHHHHHHhhHHHHHh--hh-----------
Q psy11547 436 VSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTH--LT----------- 502 (587)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~--~g----------- 502 (587)
+.+..++...=+..+.+.+.....-.|+++..-.+.|.++++.......+|..+||.+...+..- .|
T Consensus 127 ~~~~y~mL~~R~l~Gvg~~n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~ 206 (488)
T KOG2325|consen 127 NGVKYLMLVARILTGVGVGNFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNM 206 (488)
T ss_pred cchHHHHHHHHHHcCcCcccHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEe
Confidence 11233333333333344344455568888877778888888888877777777777664433211 01
Q ss_pred hhhHHHHHHHHHHHHHHHhheecccCCC
Q psy11547 503 KEGTFLMYGCISLLGTIFFYVYLPETKN 530 (587)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 530 (587)
+..+-++.+.+.++..++..++++|..+
T Consensus 207 YTap~w~m~i~~i~~~v~i~~~f~E~~~ 234 (488)
T KOG2325|consen 207 YTAPAWLMAILWIIYIVIILFFFKEVYR 234 (488)
T ss_pred cchHHHHHHHHHHHHHHHHHhheeeccc
Confidence 3345667777777777777777777544
|
|
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.00017 Score=71.17 Aligned_cols=148 Identities=12% Similarity=0.093 Sum_probs=82.9
Q ss_pred HHHhhhhhhccccccHHHHHhhhcCCCCCccCcchhHHHHHHHHHHHHHHHHhHHHhhh-----ccchhHHHHH-hhHHH
Q psy11547 95 ANLGNVNTGMVFGFSAAATSQLISRDSPYRITSDESTWIASLSAIGTMVGCVLGGYMMD-----LVGRKMTLII-TEVPT 168 (587)
Q Consensus 95 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~i~s~~~l~~~i~~~~~g~l~d-----r~Grr~~l~~-~~~~~ 168 (587)
+.+.++.+|...+.....+|.+.++. .-++|.+|.|...-+ ..-+. .-++|.++.| |+||||..++ .-.+.
T Consensus 5 L~~LY~lQGiP~GL~~gsiPflL~~~-~~~~sy~q~~~fSla-~~PfS-lKlLWaPiVDs~y~~~~GRRKSWiiP~Q~l~ 81 (544)
T PF13000_consen 5 LVLLYFLQGIPLGLAFGSIPFLLQSM-AKKVSYSQQAIFSLA-SYPFS-LKLLWAPIVDSVYSKRIGRRKSWIIPIQYLS 81 (544)
T ss_pred HHHHHHHcCcccccccccchhhhccc-cCCCChhHheeeeee-echhH-HHHhhhhhhhhhcccccCCcchhhhHHHHHH
Confidence 44557888998888877788887630 036777777654211 11111 1356666666 8999886554 33444
Q ss_pred HHHHHHHHhcCC----------CC----CCc---c--hhhHHhhhhhhccccccccccceeeeeccCCCcchhHhHHHHH
Q psy11547 169 ILGWALIALAPS----------LP----SSI---L--PWIFTGRILTGLGSGMVGAPSRIYTAECSQPHLRGMLSSLASF 229 (587)
Q Consensus 169 ~i~~~~~~~~~~----------~~----~~~---~--~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~ 229 (587)
++..+..+...+ .+ ... . ..+...-++.=+-.+.--.+.-.+.-.+..+++++.+......
T Consensus 82 g~~m~~l~~~i~~~~~~~~~~d~~~~~~~~~~~~~~i~~Lt~~F~~L~fl~ATQDIAVDGWALT~Ls~~n~~~ASTcqtv 161 (544)
T PF13000_consen 82 GILMLYLSYNISQWLLFDGVDDALLGQGESTVNNITIKFLTWFFFILVFLCATQDIAVDGWALTMLSPENVGYASTCQTV 161 (544)
T ss_pred HHHHHHHHhccchhhcccccchhhhcCCCCcccccchhHHHHHHHHHHHHHccCCceeehhhhhhcChhhcchHHHHHHh
Confidence 444444433221 00 000 0 0111222222233334444555555566678889999988888
Q ss_pred HHHHHHHHHHHhhhhh
Q psy11547 230 GVSLGVLFEYSLGAFL 245 (587)
Q Consensus 230 ~~~~G~~i~~~l~~~l 245 (587)
+.++|..++..+--.+
T Consensus 162 G~~~Gyfls~tvFlal 177 (544)
T PF13000_consen 162 GQTAGYFLSFTVFLAL 177 (544)
T ss_pred HhhhhHHHHHHHHHhh
Confidence 8888888887765555
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=98.16 E-value=1.5e-05 Score=67.22 Aligned_cols=114 Identities=13% Similarity=0.195 Sum_probs=93.5
Q ss_pred cCcchhHHHHHHHHHHHHHHHHhHHHhhhccchhHHHHHhhHHHHHHHHHHHhcCCCCCCcchhhHHhhhhhhccccccc
Q psy11547 125 ITSDESTWIASLSAIGTMVGCVLGGYMMDLVGRKMTLIITEVPTILGWALIALAPSLPSSILPWIFTGRILTGLGSGMVG 204 (587)
Q Consensus 125 ~s~~~~g~i~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~ 204 (587)
+++..--.-.++......+++++...+.+++|.|+.+++|.+.+.+-.+.. +-++.+ .++.+-++.|++.+..+
T Consensus 34 i~~~~G~~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~-~~~~~~-----~l~~~s~l~G~~~a~lW 107 (156)
T PF05978_consen 34 ISAGLGYYSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASF-FYPNSY-----TLYPASALLGFGAALLW 107 (156)
T ss_pred ccccccHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHH-HhhhHH-----HHHHHHHHHhhhhHHhh
Confidence 333333444566777788888999999999999999999999888554443 455666 88999999999999999
Q ss_pred cccceeeeeccCCCcchhHhHHHHHHHHHHHHHHHHhhhh
Q psy11547 205 APSRIYTAECSQPHLRGMLSSLASFGVSLGVLFEYSLGAF 244 (587)
Q Consensus 205 ~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~ 244 (587)
+..-.++.+..++++|++..+++......+.++|.++...
T Consensus 108 ~aqg~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~ 147 (156)
T PF05978_consen 108 TAQGTYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFF 147 (156)
T ss_pred HhhhHHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999988888888888776543
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >KOG1237|consensus | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.00069 Score=70.38 Aligned_cols=156 Identities=17% Similarity=0.223 Sum_probs=119.7
Q ss_pred cHHHHHhhhcCCCCCccCcchhHHHHHHHHHHHHHHHHhHHHhhhcc-chhHHHHHhhHHHHHHHHHHHhcCCCC-----
Q psy11547 109 SAAATSQLISRDSPYRITSDESTWIASLSAIGTMVGCVLGGYMMDLV-GRKMTLIITEVPTILGWALIALAPSLP----- 182 (587)
Q Consensus 109 ~~~~~~~~~~~~~~~~~s~~~~g~i~s~~~l~~~i~~~~~g~l~dr~-Grr~~l~~~~~~~~i~~~~~~~~~~~~----- 182 (587)
....+..+..+ ++.+...+.-.++.+.-...+..++++.++|.| ||-+++.++.++..++..+..++....
T Consensus 57 ~~nlv~ylt~~---~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~ 133 (571)
T KOG1237|consen 57 VSNLVTYLTLE---LHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPF 133 (571)
T ss_pred hhHHHHHHHHH---hccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCc
Confidence 44555566664 787888888888899989999999999999975 899999999999988866555432111
Q ss_pred ---------------CCcchhhHHhhhhhhccccccccccceeeeeccC---CCc---chhHhHHHHHHHHHHHHHHHHh
Q psy11547 183 ---------------SSILPWIFTGRILTGLGSGMVGAPSRIYTAECSQ---PHL---RGMLSSLASFGVSLGVLFEYSL 241 (587)
Q Consensus 183 ---------------~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~---~~~---r~~~~~~~~~~~~~G~~i~~~l 241 (587)
......++.+.-+..+|.|+.-+...++-+|-++ +++ +...+.++....++|..++..+
T Consensus 134 ~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~ 213 (571)
T KOG1237|consen 134 MCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTV 213 (571)
T ss_pred cccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHH
Confidence 0012356777888888999999999999999998 322 2467888888999999999888
Q ss_pred hhhh----hHHHHHHHHHHHHHHHHHHhcc
Q psy11547 242 GAFL----SWDTVAAISTIIPVLSIIAGCL 267 (587)
Q Consensus 242 ~~~l----~wr~~f~~~~~~~~~~~~~~~~ 267 (587)
..+. +|.+-|.+..+..++.+++.+.
T Consensus 214 ~vyiq~~~~w~lgf~i~~~~~~lai~iF~~ 243 (571)
T KOG1237|consen 214 LVYIQDNVGWKLGFGIPTVLNALAILIFLP 243 (571)
T ss_pred HHhhhhcccceeeccHHHHHHHHHHHHHHc
Confidence 8777 9999999888777766655443
|
|
| >KOG0252|consensus | Back alignment and domain information |
|---|
Probab=98.13 E-value=8.5e-06 Score=78.88 Aligned_cols=177 Identities=16% Similarity=0.102 Sum_probs=123.5
Q ss_pred HHHHHHHHhhhhhhccccccHHHHHhhhcCCCCCccCcchhHH--------HHHH-HHHHHHHHHHhHHHhhhccchhHH
Q psy11547 90 TLAVFANLGNVNTGMVFGFSAAATSQLISRDSPYRITSDESTW--------IASL-SAIGTMVGCVLGGYMMDLVGRKMT 160 (587)
Q Consensus 90 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~--------i~s~-~~l~~~i~~~~~g~l~dr~Grr~~ 160 (587)
..++..+..+|+........+.....+.++ .++.+.+... ...+ ...++..|-.+...+.|+.|||++
T Consensus 304 ~~Llgt~~~WFllDiafy~~nL~~s~I~~~---ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~i 380 (538)
T KOG0252|consen 304 KHLLGTAGTWFLLDIAFYGQNLFQSVIFSA---IGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYI 380 (538)
T ss_pred HHHHHHHHHHHhhhhhhhccccHHHHHHHh---hccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHH
Confidence 556666777777666555555555555553 4444433322 1111 122333355667788999999999
Q ss_pred HHHhhHHHHHHHHHHHhcCCCCCCc--c-hhhHHhhhhhhccccccccccceeeeeccCCCcchhHhHHHHHHHHHHHHH
Q psy11547 161 LIITEVPTILGWALIALAPSLPSSI--L-PWIFTGRILTGLGSGMVGAPSRIYTAECSQPHLRGMLSSLASFGVSLGVLF 237 (587)
Q Consensus 161 l~~~~~~~~i~~~~~~~~~~~~~~~--~-~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i 237 (587)
.+.+.+++++..+..+...|..... + ....+..++.-+| .......+-+|.+|.+-|+..-|+.....-+|.++
T Consensus 381 q~~GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFG---Pn~ttfivpaE~FParvR~t~hGIsAA~GK~GAiv 457 (538)
T KOG0252|consen 381 QLMGFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFG---PNATTFIVPAEIFPARVRSTCHGISAASGKAGAIV 457 (538)
T ss_pred HHhhHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcC---CCceeEEeehhhchHHHhhhhhhHHHHhccchHHH
Confidence 9999999999999999887722111 1 1222233333332 33455566689999999999999999999999999
Q ss_pred HHHhhhhh---------hHHHHHHHHHHHHHHHHHHhcccCCCc
Q psy11547 238 EYSLGAFL---------SWDTVAAISTIIPVLSIIAGCLMPESP 272 (587)
Q Consensus 238 ~~~l~~~l---------~wr~~f~~~~~~~~~~~~~~~~~~esp 272 (587)
|...-.++ +-|++|++.+...++..+..+++||+.
T Consensus 458 g~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l~pEtk 501 (538)
T KOG0252|consen 458 GAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTLLIPETK 501 (538)
T ss_pred HHHHhhHhhhccCCccccchHHHHHHHHHHHHhHheeEEeeccc
Confidence 98877666 679999999999999999999999985
|
|
| >KOG3762|consensus | Back alignment and domain information |
|---|
Probab=98.07 E-value=2.5e-06 Score=84.01 Aligned_cols=141 Identities=13% Similarity=0.101 Sum_probs=122.2
Q ss_pred CCccCcchhHHHHHHHHHHHHHHHHhHHHhhhccchhHHHHHhhHHHHHHHHHHHhcCCCCCCcchhhHHhhhhhhcccc
Q psy11547 122 PYRITSDESTWIASLSAIGTMVGCVLGGYMMDLVGRKMTLIITEVPTILGWALIALAPSLPSSILPWIFTGRILTGLGSG 201 (587)
Q Consensus 122 ~~~~s~~~~g~i~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g 201 (587)
|.+-.+...|.....-..|-.+.-++.+++..|+|+-+++.+++.+..+=.+......|.| ..+..-+++|+..+
T Consensus 400 d~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n~W-----~vLPieilqgit~a 474 (618)
T KOG3762|consen 400 DLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQNPW-----MVLPIEILQGITHA 474 (618)
T ss_pred hcCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcCch-----heeeHHHHHHHHHH
Confidence 4777778888888888889999999999999999999999999999999999999999999 99999999999999
Q ss_pred ccccccceeeeeccCCCcchhHhHHHHHH-HHHHHHHHHHhhhhh----hHHHHHHHHHHHHHHHHHHhcc
Q psy11547 202 MVGAPSRIYTAECSQPHLRGMLSSLASFG-VSLGVLFEYSLGAFL----SWDTVAAISTIIPVLSIIAGCL 267 (587)
Q Consensus 202 ~~~~~~~~~i~e~~~~~~r~~~~~~~~~~-~~~G~~i~~~l~~~l----~wr~~f~~~~~~~~~~~~~~~~ 267 (587)
..+.+..+|++...||+-|..+-++.+.. .++|--+|.++++.+ +=|..|.+.++.+++.+++...
T Consensus 475 liWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~~~~~ 545 (618)
T KOG3762|consen 475 LIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLVTLALFIS 545 (618)
T ss_pred HHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988887544 456666666666665 7788888888888877666544
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.00014 Score=74.70 Aligned_cols=163 Identities=9% Similarity=-0.002 Sum_probs=96.5
Q ss_pred hHhcHHHHHH-hcCCC-cchHHHHHHHHHHHHHHHHhHHHhhcc----cCCchh-hHhhhHHHHHHHHHHHHHHHhccCC
Q psy11547 354 VTFYAVNIFK-DAGAH-VNNNLAAVIMGIVRLIFTIASCIMMKK----MGRRSL-TFISSIGCGVSMTGLGLYIFATKDF 426 (587)
Q Consensus 354 ~~~~~~~~~~-~~g~~-~~~~~~~~~~~~~~~i~~~~~g~l~d~----~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (587)
...|+.+++. ..|.+ ...+...++.-+...+.-++.|+++|| +|||+. +.++.+..+++.+++......
T Consensus 28 ~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~---- 103 (460)
T PRK11462 28 VMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDL---- 103 (460)
T ss_pred HHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCC----
Confidence 3444444444 46776 445566666777788889999999997 477554 445556666655443321100
Q ss_pred CCCCCcCccc-hhHHHHHHHHHHHHHhccccccceeeeeccCC-CCchhhHHHHHHHHHHHHHHHHHHhhHHHHHhhh--
Q psy11547 427 WPEYKFPAFV-SYLPVLMLMTFTAASTIGYLVVPWVMIGEVYP-TKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLT-- 502 (587)
Q Consensus 427 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g-- 502 (587)
+ ... .....+...++..++.....|.. ++..|..+ +++|++..+.-.....+|..+++.+...+....|
T Consensus 104 -s-----~~~~~~y~~~~~~~~~~~~t~~~ipy~-al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~ 176 (460)
T PRK11462 104 -S-----MNGKMIYAAITYTLLTLLYTVVNIPYC-ALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGD 176 (460)
T ss_pred -C-----cchHHHHHHHHHHHHHHHHHHHhccHH-HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 0 011 12223333344445554444443 77788876 6889999999998889888888777666555433
Q ss_pred -----hhhHHHHHHHHHHHHHHHhheeccc
Q psy11547 503 -----KEGTFLMYGCISLLGTIFFYVYLPE 527 (587)
Q Consensus 503 -----~~~~~~~~~~~~~~~~~~~~~~~~~ 527 (587)
|.....+++++.+++.++++...+|
T Consensus 177 ~~~~g~~~~~~i~~ii~~i~~~i~~~~~kE 206 (460)
T PRK11462 177 NKPLGFQGGIAVLSVVAFMMLAFCFFTTKE 206 (460)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHhccee
Confidence 4444555555555555544444444
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00028 Score=67.12 Aligned_cols=154 Identities=12% Similarity=0.018 Sum_probs=91.4
Q ss_pred HHHhcCCC-cchHHHHHHHHHHHHHHHHhHHHhhcccCCchhhHhhhHHHHHHHHHHHHHHHhccCCCCCCCcCccchhH
Q psy11547 361 IFKDAGAH-VNNNLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYL 439 (587)
Q Consensus 361 ~~~~~g~~-~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (587)
..++.|++ .+.........+...+...+.|.+.||+|||+..+...++..++++..-. ...+.
T Consensus 60 LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k~~----------------~~~~~ 123 (354)
T PF05631_consen 60 LYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTKHS----------------SNYPV 123 (354)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhc----------------cccHH
Confidence 34567887 55667777777888899999999999999999888888887777764332 12222
Q ss_pred HHHHHHHHHHHHhccccccceeeeecc----CCCCchhhHHHHHHHH-HHHHHHHHHHhhHHHHHhhhh--hhHHHHHHH
Q psy11547 440 PVLMLMTFTAASTIGYLVVPWVMIGEV----YPTKVRGIVGGLTTCA-CHFFIFLTVKSYNMFQTHLTK--EGTFLMYGC 512 (587)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~p~~~r~~~~g~~~~~-~~~g~~i~~~~~g~l~~~~g~--~~~~~~~~~ 512 (587)
.++.-++-+......+...---++.|. +|++..+...+...+. +.+..++...+...+.+..+. ..+|.....
T Consensus 124 L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~ 203 (354)
T PF05631_consen 124 LLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIV 203 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHH
Confidence 222223333322222222221233443 4555555555555422 334444455555566666554 667887777
Q ss_pred HHHHHHHHhheecccCCC
Q psy11547 513 ISLLGTIFFYVYLPETKN 530 (587)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~ 530 (587)
+.+++.+++....+|..+
T Consensus 204 ~l~~~~~~I~~~W~ENyg 221 (354)
T PF05631_consen 204 LLAVAAVLILKTWPENYG 221 (354)
T ss_pred HHHHHHHHHHhcccccCC
Confidence 777777766555555443
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=97.94 E-value=2.7e-05 Score=56.92 Aligned_cols=60 Identities=8% Similarity=0.223 Sum_probs=49.4
Q ss_pred ccccHHHHHhhhcCCCCCccCcchhHHHHHHHHHHHHHHHHhHHHhhhccchhHHHHHhhHHH
Q psy11547 106 FGFSAAATSQLISRDSPYRITSDESTWIASLSAIGTMVGCVLGGYMMDLVGRKMTLIITEVPT 168 (587)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~s~~~~g~i~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~ 168 (587)
.+...|.+|...+ +.|++..|+|.+.++..+...++.+++|.++||+|+++.++....++
T Consensus 16 ~g~~~Pfl~~~~~---~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~~ 75 (77)
T PF12832_consen 16 LGCLYPFLPLYLK---QLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLFM 75 (77)
T ss_pred HHHHHhhhhHhhh---hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHH
Confidence 3444456666655 49999999999999999999999999999999999988877765543
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00029 Score=70.31 Aligned_cols=109 Identities=22% Similarity=0.350 Sum_probs=86.4
Q ss_pred HHHHHhhHHHHHHHHHHHhcCCCCC----CcchhhHHhhhhhhccccccccccceeeeeccCCC---cchhHhHHHHHHH
Q psy11547 159 MTLIITEVPTILGWALIALAPSLPS----SILPWIFTGRILTGLGSGMVGAPSRIYTAECSQPH---LRGMLSSLASFGV 231 (587)
Q Consensus 159 ~~l~~~~~~~~i~~~~~~~~~~~~~----~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~---~r~~~~~~~~~~~ 231 (587)
|+++++.+++.+|.++..++..... .....++++-++.++|.|+.-|...++++|.++++ +|...+.++..+.
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i 81 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI 81 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence 6788899999999988554422211 01237889999999999999999999999999866 3577888999999
Q ss_pred HHHHHHHHHhhhhh----hHHHHHHHHHHHHHHHHHHhcc
Q psy11547 232 SLGVLFEYSLGAFL----SWDTVAAISTIIPVLSIIAGCL 267 (587)
Q Consensus 232 ~~G~~i~~~l~~~l----~wr~~f~~~~~~~~~~~~~~~~ 267 (587)
++|..++..+..++ +|.+.|.+.++..++.++..+.
T Consensus 82 n~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~ 121 (372)
T PF00854_consen 82 NIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLS 121 (372)
T ss_dssp HHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHh
Confidence 99999999999988 8999999999888877766554
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00058 Score=72.36 Aligned_cols=154 Identities=12% Similarity=0.061 Sum_probs=97.4
Q ss_pred HHHhcCCC-cchHHHHHHHHHHHHHHHHhHHHhhcc-cCCchhhHhhhHHHHHHHHHHHHHHHhccCCCCCCCcCccchh
Q psy11547 361 IFKDAGAH-VNNNLAAVIMGIVRLIFTIASCIMMKK-MGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSY 438 (587)
Q Consensus 361 ~~~~~g~~-~~~~~~~~~~~~~~~i~~~~~g~l~d~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (587)
+....+++ ..+......+....-+..+++|++.|+ +|+++.+.++.++..++.+++.+.... ... .....
T Consensus 14 l~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~-~~~-------~~~~~ 85 (654)
T TIGR00926 14 FLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIP-SSG-------HPLHD 85 (654)
T ss_pred HHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCc-ccc-------cchHH
Confidence 33446666 334444555555666777888999886 589999999988888888777652111 000 00111
Q ss_pred HHHHHHHHHHHHHhccccccceeeeeccCCCC---chhhHHHHHHHHHHHHHHHHHHhhHHHHHhh-------hhhhHHH
Q psy11547 439 LPVLMLMTFTAASTIGYLVVPWVMIGEVYPTK---VRGIVGGLTTCACHFFIFLTVKSYNMFQTHL-------TKEGTFL 508 (587)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~---~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~~-------g~~~~~~ 508 (587)
......+.++.+...+.-|...+...|.++++ .+...+.+.....++|+.+++.+.+.+.+.. +|...|.
T Consensus 86 ~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~ 165 (654)
T TIGR00926 86 LLDLLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFG 165 (654)
T ss_pred HHHHHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHH
Confidence 11222233333333334444447778877653 3677888888899999999999999887543 5777888
Q ss_pred HHHHHHHHHHHHhh
Q psy11547 509 MYGCISLLGTIFFY 522 (587)
Q Consensus 509 ~~~~~~~~~~~~~~ 522 (587)
+.+++++++.++..
T Consensus 166 i~~i~m~ia~lvf~ 179 (654)
T TIGR00926 166 VPAILMILALIVFM 179 (654)
T ss_pred HHHHHHHHHHHHHH
Confidence 77777777666544
|
|
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0026 Score=64.27 Aligned_cols=117 Identities=9% Similarity=-0.028 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHHHHhHHHhhcccCCc-hhhHhhhHHHHHHHHHHHHHHHhccCCCCCCCcCccchhHHHHHHHHHHHH
Q psy11547 372 NLAAVIMGIVRLIFTIASCIMMKKMGRR-SLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAA 450 (587)
Q Consensus 372 ~~~~~~~~~~~~i~~~~~g~l~d~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (587)
.....++.++..+|+.+..+.. .-++| +.+.+..++=.+...++.++...++.+.+ ..-.+.+..++..++++..
T Consensus 310 ~i~~~~fNvgD~vGR~~~~~~~-~p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p---~~~~~d~~~~~~~~l~glt 385 (437)
T TIGR00939 310 IICFLLFNLFDWLGRSLTSKFM-WPDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLP---VFFPGDAYFIILMLLFGFS 385 (437)
T ss_pred HHHHHHHHHHHHHHhhhhheeE-eeCCCccchHHHHHHHHHHHHHHHHhcCCccccCC---eeecccHHHHHHHHHHHHh
Confidence 3556778888999998665532 11222 13333333333333333332222111100 0012334444444444443
Q ss_pred HhccccccceeeeeccCCCCchhhHHHHHHHHHHHHHHHHHHh
Q psy11547 451 STIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKS 493 (587)
Q Consensus 451 ~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~~~~ 493 (587)
.+.. ......+..+..++++|..+..+......+|..+|..+
T Consensus 386 nGy~-~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l 427 (437)
T TIGR00939 386 NGYL-GSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVL 427 (437)
T ss_pred hhHH-HHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3332 23344667777888888888888888877877777655
|
|
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.054 Score=53.91 Aligned_cols=119 Identities=11% Similarity=0.056 Sum_probs=81.2
Q ss_pred CcchhHHHHHHHHH-HHHHHHHhHHHhhhccchhHHHHHhhHHHHHHHHHHHhcCC--CCCCcchhhHHhhhhhhccc--
Q psy11547 126 TSDESTWIASLSAI-GTMVGCVLGGYMMDLVGRKMTLIITEVPTILGWALIALAPS--LPSSILPWIFTGRILTGLGS-- 200 (587)
Q Consensus 126 s~~~~g~i~s~~~l-~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~--~~~~~~~~l~~~r~l~G~~~-- 200 (587)
.+..+.++-+...+ +..+..++.+++.+++-|.+++-..+..+....+++++.-- -...++ -....|=+++..-
T Consensus 59 gae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp-~~~~~~~~~~~~p~~ 137 (509)
T COG3202 59 GAESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHP-DPEFSRDLFADLPMF 137 (509)
T ss_pred cchhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCC-CHHHHHHHHhhCCcc
Confidence 45667888888888 88888999999999999999999988888888888886411 000000 1111221111111
Q ss_pred ------------------------ccccc-ccceeeeeccCCCcchhHhHHHHHHHHHHHHHHHHhhhhh
Q psy11547 201 ------------------------GMVGA-PSRIYTAECSQPHLRGMLSSLASFGVSLGVLFEYSLGAFL 245 (587)
Q Consensus 201 ------------------------g~~~~-~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l 245 (587)
..... .-.....|.+..+|-.|..++++.+.+++..++..+..++
T Consensus 138 l~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~ 207 (509)
T COG3202 138 LKWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWL 207 (509)
T ss_pred ceeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 01111 2223345667778889999999999999999999988887
|
|
| >PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS) | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0032 Score=57.00 Aligned_cols=50 Identities=16% Similarity=0.354 Sum_probs=36.0
Q ss_pred CcchhHhHHHHHHHHHHHHHHHHhh--h-----hh--hHHHHHHHHHHHHHHHHHHhcc
Q psy11547 218 HLRGMLSSLASFGVSLGVLFEYSLG--A-----FL--SWDTVAAISTIIPVLSIIAGCL 267 (587)
Q Consensus 218 ~~r~~~~~~~~~~~~~G~~i~~~l~--~-----~l--~wr~~f~~~~~~~~~~~~~~~~ 267 (587)
++|+..+.+...++++|.++.-..- . .+ +|++++.+.+++.++-+++...
T Consensus 2 k~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~i 60 (267)
T PF07672_consen 2 KKKSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILYII 60 (267)
T ss_pred CccceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888888888888887765432 1 11 8999999988888776665544
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0017 Score=66.05 Aligned_cols=154 Identities=16% Similarity=0.124 Sum_probs=91.5
Q ss_pred HHHHHhcCCCcchHHHHHHHHHHHH--HHHHhHHHhhcccC-----CchhhHhhhHHHHHHHHHHHHHHHhccCCCCCCC
Q psy11547 359 VNIFKDAGAHVNNNLAAVIMGIVRL--IFTIASCIMMKKMG-----RRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYK 431 (587)
Q Consensus 359 ~~~~~~~g~~~~~~~~~~~~~~~~~--i~~~~~g~l~d~~g-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (587)
+++.++.|.+ .........+..+ ...++.|.++|-+. ||+.+.++.++..++.+.++.....
T Consensus 14 ~~l~~~l~ls--~~~~~~~~~~~~lPw~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~--------- 82 (433)
T PF03092_consen 14 PFLKDDLGLS--PAQLQRLSSLASLPWSIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPAS--------- 82 (433)
T ss_pred HHHHHHcCCC--HHHHHHHHHHHhCchHHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccc---------
Confidence 3444556775 2223333333333 34678899999873 5556666666665555555543221
Q ss_pred cCccchhHHHHHHHHHHHHHhccccccceeeeeccC---CCCchhhHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhHHH
Q psy11547 432 FPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVY---PTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLTKEGTFL 508 (587)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~ 508 (587)
........+.+++...+.... -...-+.+.|.. |.+ +|...+.......+|+.++..+.|.+.+..+++..|.
T Consensus 83 --~~s~~~~~~~l~la~~g~a~~-DV~aDa~vvE~~~~~p~~-~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~ 158 (433)
T PF03092_consen 83 --ESSAAIAVVLLFLASFGYAFA-DVAADALVVELARREPES-RGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFL 158 (433)
T ss_pred --cchhhhHHHHHHHHHHHHHHH-HHhhhHHHHHHhhcCCch-hHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEeh
Confidence 011112222222222222221 122235566664 334 7788888888999999999999999999999999998
Q ss_pred HHHHHHHHHHHHhheeccc
Q psy11547 509 MYGCISLLGTIFFYVYLPE 527 (587)
Q Consensus 509 ~~~~~~~~~~~~~~~~~~~ 527 (587)
+.+.+..+..+..++..+|
T Consensus 159 i~~~~~~l~~~~~~~~~~e 177 (433)
T PF03092_consen 159 ISAALPLLMLIVALFLLEE 177 (433)
T ss_pred HHHHHHHHHHHHHHHhhhh
Confidence 8887777776665555555
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.032 Score=56.93 Aligned_cols=120 Identities=13% Similarity=0.136 Sum_probs=76.5
Q ss_pred CcchhHHHHHHHHH-HHHHHHHhHHHhhhccchhHHHHHhhHHHHHHHHHHHhc--CCCCCCcc----------------
Q psy11547 126 TSDESTWIASLSAI-GTMVGCVLGGYMMDLVGRKMTLIITEVPTILGWALIALA--PSLPSSIL---------------- 186 (587)
Q Consensus 126 s~~~~g~i~s~~~l-~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~--~~~~~~~~---------------- 186 (587)
.+..+..+-....+ +..+...+..+++++++|.+++-+.+..+.....+.++. |+-...++
T Consensus 56 gae~I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~ 135 (491)
T PF03219_consen 56 GAEVIPFLKVWGVLPVAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFK 135 (491)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHH
Confidence 44556666665555 555667889999999999999888877777766666653 11110000
Q ss_pred --------hhhHHhhhhhhcccccccc-ccceeeeeccCCCcchhHhHHHHHHHHHHHHHHHHhhhhh
Q psy11547 187 --------PWIFTGRILTGLGSGMVGA-PSRIYTAECSQPHLRGMLSSLASFGVSLGVLFEYSLGAFL 245 (587)
Q Consensus 187 --------~~l~~~r~l~G~~~g~~~~-~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l 245 (587)
|.+.+.-++.-+-.....+ .-..+..|.++.+|-.|..+++..+.++|.++++.+..++
T Consensus 136 ~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~ 203 (491)
T PF03219_consen 136 GFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYF 203 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000111111111111111 3356678888889999999999999999999999887776
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0013 Score=48.02 Aligned_cols=59 Identities=14% Similarity=0.215 Sum_probs=49.6
Q ss_pred cchhhHhcHHHHHHhcCCC-cchHHHHHHHHHHHHHHHHhHHHhhcccCCchhhHhhhHH
Q psy11547 350 GVNPVTFYAVNIFKDAGAH-VNNNLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIG 408 (587)
Q Consensus 350 ~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~~~~~~~~~~~ 408 (587)
+.....-|.+.++++.|++ .+.+....+..+..+++.++.|+++||+++++........
T Consensus 15 ~~g~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~ 74 (77)
T PF12832_consen 15 ALGCLYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLF 74 (77)
T ss_pred HHHHHHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHH
Confidence 4566777888999999998 7778899999999999999999999999998876654443
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0063 Score=51.40 Aligned_cols=109 Identities=9% Similarity=0.009 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHHHHHHhHHHhhcccCCchhhHhhhHHHHHHHHHHHHHHHhccCCCCCCCcCccchhHHHHHHHHHHHHH
Q psy11547 372 NLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAAS 451 (587)
Q Consensus 372 ~~~~~~~~~~~~i~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (587)
.....+......++.++.+.+.+++|.|+.++++.+...+-.+.... ...+..+....+.+.+.
T Consensus 40 ~~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~~~----------------~~~~~l~~~s~l~G~~~ 103 (156)
T PF05978_consen 40 YYSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASFFY----------------PNSYTLYPASALLGFGA 103 (156)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh----------------hhHHHHHHHHHHHhhhh
Confidence 34556666777788888999999999999999888877765555433 23344445555555555
Q ss_pred hccccccceeeeeccCCCCchhhHHHHHHHHHHHHHHHHHHhhHHH
Q psy11547 452 TIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMF 497 (587)
Q Consensus 452 ~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l 497 (587)
+..+..- -.++.+...++.+++..++...+...+.++|..+.-.+
T Consensus 104 a~lW~aq-g~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~ 148 (156)
T PF05978_consen 104 ALLWTAQ-GTYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFI 148 (156)
T ss_pred HHhhHhh-hHHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555444 37888888889999999998888888777776654433
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0095 Score=58.61 Aligned_cols=155 Identities=12% Similarity=0.029 Sum_probs=88.8
Q ss_pred cHHHHHHh-cCCCc-chH-HHHHHHHHHHHHHHHhHHHhhcccCCchhhHhhhHHHHHHHHHHHHHHHhccCCCCCCCcC
Q psy11547 357 YAVNIFKD-AGAHV-NNN-LAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFP 433 (587)
Q Consensus 357 ~~~~~~~~-~g~~~-~~~-~~~~~~~~~~~i~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (587)
..|++.+. .+++. +.. -..-+..-..++..+....+.|.++.|++++++.+...+..+++.+
T Consensus 26 l~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~--------------- 90 (412)
T PF01770_consen 26 LTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLF--------------- 90 (412)
T ss_pred chHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH---------------
Confidence 33444443 56662 222 2222233345566677888999999999999888887777666665
Q ss_pred ccchhHHHHHHHHHHHHHhccccccceeeeeccCCCCchhhHHHHHHHHHHHHHHHHHHhhHHHHHhh--hhhhHHHHHH
Q psy11547 434 AFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHL--TKEGTFLMYG 511 (587)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~~--g~~~~~~~~~ 511 (587)
.......-+.-+.++..... -...++++-...|++.--++.+.......+|.+++..++-.+...- .+.....+..
T Consensus 91 ~~sv~~mq~~q~~yg~~~a~--evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl 168 (412)
T PF01770_consen 91 GTSVLAMQLMQFFYGLATAA--EVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISL 168 (412)
T ss_pred HCcHHHHHHHHHHHHHHHHH--HHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 11222222222333332222 1222466666778887788899988888888888887776665532 2333444444
Q ss_pred HHHHHHHHHhheecccCC
Q psy11547 512 CISLLGTIFFYVYLPETK 529 (587)
Q Consensus 512 ~~~~~~~~~~~~~~~~~~ 529 (587)
+...++.++. +++|..+
T Consensus 169 ~~~~~a~~~~-~fLP~~~ 185 (412)
T PF01770_consen 169 ASVSLALLIA-LFLPMPK 185 (412)
T ss_pred HHHHHHHHHH-HHcCCCC
Confidence 4444444433 4455543
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >KOG1479|consensus | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.12 Score=50.60 Aligned_cols=173 Identities=14% Similarity=0.089 Sum_probs=78.5
Q ss_pred HHHHHHHHHHhhhhhhccccccHHHHHhhhcCCCCCccCcchhHHHHHHHHHHHHHHHHhHHHhhhccchhHHHHHhhHH
Q psy11547 88 SLTLAVFANLGNVNTGMVFGFSAAATSQLISRDSPYRITSDESTWIASLSAIGTMVGCVLGGYMMDLVGRKMTLIITEVP 167 (587)
Q Consensus 88 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~i~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~ 167 (587)
.+.+.++..++... ....+..+.+.+.....+.+. .......+.+...+..++...+--+..-|.-..++..+
T Consensus 19 v~~i~~llGiG~Ll---pWN~fiTa~~y~~~~~~~~~~----~~~F~~~~~~~a~i~~ll~~~~n~~~~~~~~~~~~~~l 91 (406)
T KOG1479|consen 19 VYLIFLLLGIGTLL---PWNMFITASDYYYYRFPGYHN----SKNFTSSYTLAAQIPLLLFNLLNAFLNTRLRTRVGYLL 91 (406)
T ss_pred HHHHHHHHhccccc---chHhhhccHHHHHhhcCCCch----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555444433 233334445555554222333 44444555555555555555444444322222222111
Q ss_pred H---HHHHHHHHhc---CCCCCCc-chhhHHhhhhhhccccccccccceeeeeccCCCcchhHhHHHHHHHHHHHHHHHH
Q psy11547 168 T---ILGWALIALA---PSLPSSI-LPWIFTGRILTGLGSGMVGAPSRIYTAECSQPHLRGMLSSLASFGVSLGVLFEYS 240 (587)
Q Consensus 168 ~---~i~~~~~~~~---~~~~~~~-~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~ 240 (587)
+ .+..+.+.++ ...+... ++..++.-.+.|++.|......+...++ +|++.-+-. ..+.++++++..+
T Consensus 92 ~~~~il~i~~l~~~~v~~~~~~~~ff~vt~~~vv~~~~a~a~~qgs~~G~a~~-~P~~ytqav----m~G~a~aG~l~Sl 166 (406)
T KOG1479|consen 92 SLIAILFIVTLDLALVKTDTWTNGFFLVTLIIVVLLNLANAVVQGSLYGLAGL-FPSEYTQAV----MSGQALAGTLTSL 166 (406)
T ss_pred HHHHHHHHHHHHHHhhccCCccchhHHHHHHHHHHHhhhhhhhccchhhhhhc-CCHHHHHHH----HhcchhHhHHHHH
Confidence 1 1111222222 2222112 3456667888888888887777777666 565533222 2233333333332
Q ss_pred hhhhh---------hHHHHHHHHHHHHHHHHHHhcccCCCc
Q psy11547 241 LGAFL---------SWDTVAAISTIIPVLSIIAGCLMPESP 272 (587)
Q Consensus 241 l~~~l---------~wr~~f~~~~~~~~~~~~~~~~~~esp 272 (587)
+.-.. +=...|.+..++.++++++...+|..|
T Consensus 167 ~~i~tka~~~~~~~sA~~yF~~s~~~~llC~i~y~~l~~lp 207 (406)
T KOG1479|consen 167 LRILTKAAFSDSRTSALIYFITSTVILLLCFVLYLVLPKLP 207 (406)
T ss_pred HHHHHHHhcCCCCceeehhHHHHHHHHHHHHHHHHHhhcch
Confidence 22111 223445555555555555555577666
|
|
| >KOG2563|consensus | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0089 Score=58.56 Aligned_cols=123 Identities=13% Similarity=0.057 Sum_probs=80.1
Q ss_pred cchHHHHHHHHHHHHHHHHhHHHhhcccCCchhhHhhhHHHHHHHHHHHHHHHhccCCCCCCCcCccchh--HHHHHHHH
Q psy11547 369 VNNNLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSY--LPVLMLMT 446 (587)
Q Consensus 369 ~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 446 (587)
....+...++.+..++..+.+-|+.||+|-|..+.++..+.+++..+=....... ..+..+ .....-.+
T Consensus 79 ~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~---------v~~~f~~~l~~~Gq~i 149 (480)
T KOG2563|consen 79 SAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLPF---------VPPLFRRPLTHTGQSI 149 (480)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCcc---------ccccchhhhhHHhHHH
Confidence 4556888889999999999999999999999999999998888876654411110 001122 11111111
Q ss_pred HHHHHhccccccceeeeeccCCCCchhhHHHHHHHHHHHHHHHHHHhhHHHHHhh
Q psy11547 447 FTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHL 501 (587)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~~ 501 (587)
... .......++.-...-.||+++|+++..+..+.+.+|.+++..+-+.+..+.
T Consensus 150 aa~-Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~~~ 203 (480)
T KOG2563|consen 150 AAA-AQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVPSS 203 (480)
T ss_pred HHH-hhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecCCC
Confidence 111 111111111122334589999999999999999999999888877776543
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.00011 Score=76.16 Aligned_cols=153 Identities=10% Similarity=0.004 Sum_probs=1.2
Q ss_pred HHhccchhhHhcHHHHHHhcCCC-cchHHHHHHHHHHHHHHHHhHHHhhcccCCchhhHhhhHHHHHHHHHHHHHHHhcc
Q psy11547 346 YQFSGVNPVTFYAVNIFKDAGAH-VNNNLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATK 424 (587)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (587)
.+......+....+.+-++++++ .+.+.+....-++.++..++..++..|..|-+.+..+.++++++.+++.+-.+...
T Consensus 14 ~q~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~ 93 (539)
T PF03137_consen 14 FQMMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSG 93 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcC
Confidence 33333333444455555667777 67788888888999999999999998888877888888888888888765322211
Q ss_pred CC--CC-----------CCCc------------------Cccc---hhHHHHHHHHHHHHHhccccccceeeeeccCCCC
Q psy11547 425 DF--WP-----------EYKF------------------PAFV---SYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTK 470 (587)
Q Consensus 425 ~~--~~-----------~~~~------------------~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 470 (587)
.+ .. .... .... .+..+++.-++.+.......++..+|+-|..+++
T Consensus 94 ~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~ 173 (539)
T PF03137_consen 94 PYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKK 173 (539)
T ss_dssp ----------------------------------------------------------SSS-------------------
T ss_pred CCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccc
Confidence 00 00 0000 0011 1222223333333344445566779999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhhHHHH
Q psy11547 471 VRGIVGGLTTCACHFFIFLTVKSYNMFQ 498 (587)
Q Consensus 471 ~r~~~~g~~~~~~~~g~~i~~~~~g~l~ 498 (587)
..+...|+..+...+|-++|-.+++...
T Consensus 174 ~splYiGi~~~~~~lGPa~Gf~lg~~~L 201 (539)
T PF03137_consen 174 NSPLYIGILYAMSILGPALGFLLGSFCL 201 (539)
T ss_dssp ----------------------------
T ss_pred cCccchhhhhHHhhccHHHHHHHHHHHH
Confidence 9999999999999888888877776554
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.0023 Score=62.82 Aligned_cols=110 Identities=21% Similarity=0.233 Sum_probs=79.8
Q ss_pred cchhHHHHHHHHHHHHHHHHhHHHhhhccchhHHHHHhhHHH--H---HHHHHHHhcCCCCCCcchhhHHhhhhhhcccc
Q psy11547 127 SDESTWIASLSAIGTMVGCVLGGYMMDLVGRKMTLIITEVPT--I---LGWALIALAPSLPSSILPWIFTGRILTGLGSG 201 (587)
Q Consensus 127 ~~~~g~i~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~--~---i~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g 201 (587)
.++..+...+|.+|-.++.--...+ |+ |++.+.+.+-. . +.....-+.++.| .+++.-+..|+..|
T Consensus 280 r~~Y~~Y~~~YQ~GVFISRSS~~~~--ri--r~lwils~LQ~~nl~~~~l~s~~~fipsi~-----ivf~lif~eGLlGG 350 (402)
T PF02487_consen 280 RDQYRWYQLLYQLGVFISRSSLPFF--RI--RRLWILSLLQVINLVFLLLQSWYRFIPSIW-----IVFVLIFYEGLLGG 350 (402)
T ss_pred HHHHHHHHHHHHHHHhhhhcceeee--eh--hhHHHHHHHHHHHHHHHHHHHHHHHhhHHH-----HHHHHHHHHHHhhh
Confidence 4677777777777766664332211 33 44333333222 1 2222233456666 88889999999999
Q ss_pred ccccccceeeeeccCCCcchhHhHHHHHHHHHHHHHHHHhhhhh
Q psy11547 202 MVGAPSRIYTAECSQPHLRGMLSSLASFGVSLGVLFEYSLGAFL 245 (587)
Q Consensus 202 ~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l 245 (587)
..+......+.|-.++++|...++....+-++|.+++.+++-.+
T Consensus 351 a~YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~l 394 (402)
T PF02487_consen 351 ASYVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPL 394 (402)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999988766
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.018 Score=59.63 Aligned_cols=122 Identities=15% Similarity=0.029 Sum_probs=71.5
Q ss_pred CccCcchhHHHHHHHHHHHHHHHHhHHHhhhccchhHHHHH-hhHHHH-HHHHHHHhcCCCCCCcchhhHHhhhhhhccc
Q psy11547 123 YRITSDESTWIASLSAIGTMVGCVLGGYMMDLVGRKMTLII-TEVPTI-LGWALIALAPSLPSSILPWIFTGRILTGLGS 200 (587)
Q Consensus 123 ~~~s~~~~g~i~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~-~~~~~~-i~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~ 200 (587)
+|-+..+.+.+.+++.+|.++|+.+++++.++.-|+....- .+.+.+ ++..+......+.......++..-++.|+..
T Consensus 45 ~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~~~~e~~i~l~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~ 124 (521)
T PRK03612 45 LGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGFVAVELLLALLGGLSALILYAAFAFQGLSRLLLYVLVLLIGLLI 124 (521)
T ss_pred hCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67788899999999999999999999988754333322111 111111 1111111111111001112344556677878
Q ss_pred cccccccceeeeeccCCCcchhHhHHHHHHHHHHHHHHHHhhhhh
Q psy11547 201 GMVGAPSRIYTAECSQPHLRGMLSSLASFGVSLGVLFEYSLGAFL 245 (587)
Q Consensus 201 g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l 245 (587)
|+..|....+..+... ++-+...|-......+|.++|.++.+++
T Consensus 125 G~~~Pl~~~~~~~~~~-~~~g~~~g~ly~~ntlGa~~G~l~~~~v 168 (521)
T PRK03612 125 GMEIPLLMRILQRIRD-QHLGHNVATVLAADYLGALVGGLAFPFL 168 (521)
T ss_pred HHHHHHHHHHHHhccc-cchhhhhhhhHhHHhHHHHHHHHHHHHH
Confidence 8888877666654322 2245667777777788888888777766
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.13 Score=52.43 Aligned_cols=113 Identities=9% Similarity=0.080 Sum_probs=71.4
Q ss_pred HHHhHHHhhcccCCchhhHhhhHHHHHHHHHHHHHHHhccCCCCCC-----C---cCcc--------chhHHHHHHHHHH
Q psy11547 385 FTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEY-----K---FPAF--------VSYLPVLMLMTFT 448 (587)
Q Consensus 385 ~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~---~~~~--------~~~~~~~~~~~~~ 448 (587)
..++.+++++|++|+++..+.........+++++......+...+. . .+.. ..|.... ..+..
T Consensus 60 ~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~-FYv~~ 138 (472)
T TIGR00769 60 FMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFAL-FYVMA 138 (472)
T ss_pred HHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHH-HHHHH
Confidence 3678899999999999887766666666666655433211110000 0 0000 1122222 22222
Q ss_pred HHHhccccc-cceeeeeccCCCCchhhHHHHHHHHHHHHHHHHHHhhHHHH
Q psy11547 449 AASTIGYLV-VPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQ 498 (587)
Q Consensus 449 ~~~~~~~~~-~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~ 498 (587)
-.++....+ +.|.+++|++..++-.+-.++....+++|..+++.+...+.
T Consensus 139 elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~ 189 (472)
T TIGR00769 139 ELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFS 189 (472)
T ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 223333333 66789999999999999999999999999999998887766
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >KOG3626|consensus | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.052 Score=57.30 Aligned_cols=195 Identities=13% Similarity=0.036 Sum_probs=121.2
Q ss_pred HHHHHHHHHHHHhccchhhHhcHHHHHHhcCCC-cchHHHHHHHHHHHHHHHHhHHHhhcccCCchhhHhhhHHHHHHHH
Q psy11547 336 FVILMLYFLIYQFSGVNPVTFYAVNIFKDAGAH-VNNNLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMT 414 (587)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~ 414 (587)
++.+..+..+.+......+...+..+-+.++++ .+++++...+-++..+...+..+...|.-|-+.+.++.++++++.+
T Consensus 98 fl~~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsl 177 (735)
T KOG3626|consen 98 FLVLLSLAAFAQGLYVGYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSL 177 (735)
T ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHH
Confidence 334444444444333333344444444456666 5667777777788888888888998999888888999999999988
Q ss_pred HHHHHHHhccC-----------CCCC-------------C-------Cc---Ccc--chhHHHHHHHHHHHHHhcccccc
Q psy11547 415 GLGLYIFATKD-----------FWPE-------------Y-------KF---PAF--VSYLPVLMLMTFTAASTIGYLVV 458 (587)
Q Consensus 415 ~~~~~~~~~~~-----------~~~~-------------~-------~~---~~~--~~~~~~~~~~~~~~~~~~~~~~~ 458 (587)
+..+-...... ...+ . +. ... ..+..+++..++.+.+.....++
T Consensus 178 l~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tl 257 (735)
T KOG3626|consen 178 LFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTL 257 (735)
T ss_pred HHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccC
Confidence 87753221000 0000 0 00 011 13334444445555555555667
Q ss_pred ceeeeeccCCCCchhhHHHHHHHHHHHHHHHHHHhhHHHHHhh------------------h-hhhHHHHHHHHHHHHHH
Q psy11547 459 PWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHL------------------T-KEGTFLMYGCISLLGTI 519 (587)
Q Consensus 459 ~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~~------------------g-~~~~~~~~~~~~~~~~~ 519 (587)
..+|+-|...++......|+..++..+|-++|-.+++.+...+ | |...|++.+.+.++..+
T Consensus 258 GisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~ 337 (735)
T KOG3626|consen 258 GISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAV 337 (735)
T ss_pred CCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHH
Confidence 7799999999999899999999999998888888877765321 1 34456666666666666
Q ss_pred HhheecccCCCC
Q psy11547 520 FFYVYLPETKNK 531 (587)
Q Consensus 520 ~~~~~~~~~~~~ 531 (587)
.. +++|+...+
T Consensus 338 p~-f~fPk~lp~ 348 (735)
T KOG3626|consen 338 PL-FFFPKELPK 348 (735)
T ss_pred HH-HhCcccCcc
Confidence 54 445544433
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.11 Score=52.11 Aligned_cols=168 Identities=9% Similarity=0.013 Sum_probs=90.7
Q ss_pred hhHhcHHHHHHhcCC-C-cchHHHHHHHHHHHHHHHHhHHHhhcccCCchhhHhhhHH----HHHHHHHHHHHHHhccCC
Q psy11547 353 PVTFYAVNIFKDAGA-H-VNNNLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIG----CGVSMTGLGLYIFATKDF 426 (587)
Q Consensus 353 ~~~~~~~~~~~~~g~-~-~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 426 (587)
...+..+.++.+..- + .........-.+..++.+...|...||..|.+....+.+. .++++.++..........
T Consensus 20 ~w~Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~~s~~~~~~l~~~~~~~ 99 (432)
T PF06963_consen 20 MWEFAVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVAASCALFLLLLSYPSSS 99 (432)
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhCCccc
Confidence 344555556655422 2 3455666777788888889999999999998876665443 233333333322221110
Q ss_pred CCCCCcCccchhHHHHHHHHHHHHHhccccccceeeeec------cC--CCCchhhHHHHHHHHHHHHHHHHHHhhHHHH
Q psy11547 427 WPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGE------VY--PTKVRGIVGGLTTCACHFFIFLTVKSYNMFQ 498 (587)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~--p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~ 498 (587)
.. ........+....+++.....+ ........| +. +++.....++...-+=.+...++|.+.|.+.
T Consensus 100 ~~----~~~~~~~l~~~~~~~~~i~~La--s~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ckllaPl~vG~l~ 173 (432)
T PF06963_consen 100 SQ----SSWLFIALFALLILLGAIERLA--SIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCKLLAPLFVGLLM 173 (432)
T ss_pred cc----cchHHHHHHHHHHHHHHHHHHH--HhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 00 0011111222222222211111 111122222 23 2233344444444455578999999999999
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHhheecc
Q psy11547 499 THLTKEGTFLMYGCISLLGTIFFYVYLP 526 (587)
Q Consensus 499 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 526 (587)
+..+......+.++..+++..+=++++.
T Consensus 174 t~~s~~~~~~~i~~~N~~S~~vEy~~l~ 201 (432)
T PF06963_consen 174 TFASPVIAAIFIAGWNLASVFVEYFLLA 201 (432)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9888888888888888877776555543
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >KOG3098|consensus | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.032 Score=55.94 Aligned_cols=109 Identities=20% Similarity=0.232 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHhHHHhhh---ccchhHHHHHhhHHHHHHHHHHHhcCCCC-------------CCcchhhHHhhhhhhcc
Q psy11547 136 LSAIGTMVGCVLGGYMMD---LVGRKMTLIITEVPTILGWALIALAPSLP-------------SSILPWIFTGRILTGLG 199 (587)
Q Consensus 136 ~~~l~~~i~~~~~g~l~d---r~Grr~~l~~~~~~~~i~~~~~~~~~~~~-------------~~~~~~l~~~r~l~G~~ 199 (587)
...+|..+++.+.+.+.+ ++||++.+.++.++..++.++.-...... .......++.-++.|++
T Consensus 287 ~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~ 366 (461)
T KOG3098|consen 287 GIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGFG 366 (461)
T ss_pred HHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHhhH
Confidence 334444555555666664 58999999999999988888877642211 11133667788999999
Q ss_pred ccccccccceeeeeccCCCcchhHhHHHHHHHHHHHHHHHHhhhhh
Q psy11547 200 SGMVGAPSRIYTAECSQPHLRGMLSSLASFGVSLGVLFEYSLGAFL 245 (587)
Q Consensus 200 ~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l 245 (587)
-+......+.++...+ +++|..+.++...-..++..++.......
T Consensus 367 D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~~~~~ 411 (461)
T KOG3098|consen 367 DACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFFSPYL 411 (461)
T ss_pred HHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 9999999999999988 56688898888888888877766655544
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.21 Score=47.86 Aligned_cols=144 Identities=16% Similarity=0.088 Sum_probs=83.1
Q ss_pred hHhcHHHHHHhcCCCc---chHHHHHHHHHHHHHHHHhHHHhhcccCCchhhHhhhHHHHHHHHHHHHHHHhccCCCCCC
Q psy11547 354 VTFYAVNIFKDAGAHV---NNNLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEY 430 (587)
Q Consensus 354 ~~~~~~~~~~~~g~~~---~~~~~~~~~~~~~~i~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (587)
.....+.+..+.+.+. ..........+...++.++.|.+.||.|||+.+..+.....++.+...+..
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~---------- 90 (338)
T COG0477 21 LSPALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAP---------- 90 (338)
T ss_pred HHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCc----------
Confidence 3344455555544442 345666677777778889999999999999777666654333322222200
Q ss_pred CcCccchhHHHHHHHHHHHHHhccccccceeeeeccCCC-CchhhHHHHHHH-HHHHHHHHHHHhhHHHHHh--hhhhhH
Q psy11547 431 KFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPT-KVRGIVGGLTTC-ACHFFIFLTVKSYNMFQTH--LTKEGT 506 (587)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~r~~~~g~~~~-~~~~g~~i~~~~~g~l~~~--~g~~~~ 506 (587)
....+.........+.+ .....+...+++.|..|. +.|+...+.... ...++..+++.+.+.+... .+|+..
T Consensus 91 ---~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (338)
T COG0477 91 ---NVGLALLLILRLLQGLG-GGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAA 166 (338)
T ss_pred ---cchHHHHHHHHHHHHhh-hHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 00112222222222222 223345555888888887 667888888877 5677778888666666554 345554
Q ss_pred HHHHH
Q psy11547 507 FLMYG 511 (587)
Q Consensus 507 ~~~~~ 511 (587)
+....
T Consensus 167 ~~~~~ 171 (338)
T COG0477 167 FLLAA 171 (338)
T ss_pred HHHHH
Confidence 44333
|
|
| >PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.0032 Score=60.84 Aligned_cols=118 Identities=9% Similarity=0.025 Sum_probs=1.9
Q ss_pred HHHHHHHHHHHHHHHhHHHhhccc-CCchhhHhhhHHHHHHHHHHHHHHHhccCCCCCCCcCccchhHHHHHHHHHHHHH
Q psy11547 373 LAAVIMGIVRLIFTIASCIMMKKM-GRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAAS 451 (587)
Q Consensus 373 ~~~~~~~~~~~i~~~~~g~l~d~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (587)
.....+.++..+|+.+..+..-+. .+|++ .+..+.=.+...++..+...+..... ...-.+.+..++..++++...
T Consensus 186 ~~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l-~~~s~~R~~fiPlf~~cn~~p~~~~~--~~~~~~d~~~~i~~~l~g~TN 262 (309)
T PF01733_consen 186 VLFLLFNLGDFIGRFLASWPRWPGPSPRWL-WILSLLRFLFIPLFLLCNVQPRPRYL--PVLFNSDAWFIILMLLFGFTN 262 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhcchhcceeEecccccccH-HHHHHHHHHHHHHHHHHHhhcccccC--CCcccchHHHHHHHHHHHHcc
Confidence 345668889999999888743221 23333 33333333333333322111110000 000112233333333333333
Q ss_pred hccccccceeeeeccCCCCchhhHHHHHHHHHHHHHHHHHHhh
Q psy11547 452 TIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSY 494 (587)
Q Consensus 452 ~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~~~~~ 494 (587)
+. ..+....+..+..++++|..+..+......+|-.+|..+.
T Consensus 263 Gy-l~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~ls 304 (309)
T PF01733_consen 263 GY-LSTLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVLS 304 (309)
T ss_dssp -----HHHH----------------------------------
T ss_pred ch-hhhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 2344457778888888888887777777777777766543
|
Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A. |
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.073 Score=53.15 Aligned_cols=118 Identities=14% Similarity=-0.073 Sum_probs=75.6
Q ss_pred hhhHhhhHHHHHHHHHHHHHHHhccCCCCCCCcCccchhHHHHHHHHHHHHHhccccccceeeeeccCCCC---chhhHH
Q psy11547 400 SLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTK---VRGIVG 476 (587)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~---~r~~~~ 476 (587)
+.+.++.++..++.+++.......... .........+.+.++. ....+.-|...++..|.++++ .|...+
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~------~~~~~~~~~~gL~lia-~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F 74 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLP------SGIQLGLFYIGLALIA-VGTGGIKPNISPFGADQYDEDDDSRRDSFF 74 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC------------CHHHHHHHHHH-HHHHCCHHHHHHHHHHCSSTTTTTHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhh------hhHHHHHHHHHHHHHH-hccccccccHHHHHHHHhcccchhhhhhhH
Confidence 456677788888887765533321100 0011223333344433 333444455558888888765 456777
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHhhhhhhHHHHHHHHHHHHHHHhhee
Q psy11547 477 GLTTCACHFFIFLTVKSYNMFQTHLTKEGTFLMYGCISLLGTIFFYVY 524 (587)
Q Consensus 477 g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 524 (587)
.......++|..++..+.+++.++.||...|.+.++..+++.+..+.-
T Consensus 75 ~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~ 122 (372)
T PF00854_consen 75 NWFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSG 122 (372)
T ss_dssp HHHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhC
Confidence 888899999999999999999999999999998888777777655443
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.11 Score=38.45 Aligned_cols=66 Identities=14% Similarity=0.018 Sum_probs=57.0
Q ss_pred hhHhcHHHHHHhcCCC-cchHHHHHHHHHHHHHHHHhHHHhhcccCCchhhHhhhHHHHHHHHHHHH
Q psy11547 353 PVTFYAVNIFKDAGAH-VNNNLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGL 418 (587)
Q Consensus 353 ~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~ 418 (587)
.++-.+|.+.++.+++ .+.++..+...++.++|++...++.++..+++.+..+.+...+..+.+++
T Consensus 10 ayTplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~ 76 (85)
T PF06779_consen 10 AYTPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMAL 76 (85)
T ss_pred HHHhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 4556778888999998 67789999999999999999999999988888888888888888887776
|
Note that many members are hypothetical proteins. |
| >KOG3097|consensus | Back alignment and domain information |
|---|
Probab=95.21 E-value=2.9 Score=39.68 Aligned_cols=75 Identities=16% Similarity=0.274 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHhHHHhhhccchhHHHHHhhHHHHHHHHHHHhcCCCCCCcchhhHHhhhhhhccccccccccceeeeecc
Q psy11547 136 LSAIGTMVGCVLGGYMMDLVGRKMTLIITEVPTILGWALIALAPSLPSSILPWIFTGRILTGLGSGMVGAPSRIYTAECS 215 (587)
Q Consensus 136 ~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~ 215 (587)
...+.....+++.+.+..++|.|.+|.++...+... .+.|++ ..+..++..-.+.|+|.+..+..--+|+++.-
T Consensus 66 ~~y~~l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~ly-----iA~Nl~-pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g 139 (390)
T KOG3097|consen 66 ALYLSLIDSSMFMPLLIRFLGTKWTMVLAVFPYALY-----IAANLE-PRYETLVPAGLVLGMAAGPIWASKGTYLTPMG 139 (390)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH-----HHhhcc-hhHHhhccHHHhhccccccccccCcceecHHH
Confidence 344556667777779999999999999887766433 233332 12237888999999999999999999998765
Q ss_pred C
Q psy11547 216 Q 216 (587)
Q Consensus 216 ~ 216 (587)
.
T Consensus 140 ~ 140 (390)
T KOG3097|consen 140 Q 140 (390)
T ss_pred H
Confidence 4
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=94.67 E-value=0.75 Score=47.91 Aligned_cols=50 Identities=16% Similarity=0.125 Sum_probs=36.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhHHHHH-hhhhhhHHHHHHHHHHHHHHHh
Q psy11547 472 RGIVGGLTTCACHFFIFLTVKSYNMFQT-HLTKEGTFLMYGCISLLGTIFF 521 (587)
Q Consensus 472 r~~~~g~~~~~~~~g~~i~~~~~g~l~~-~~g~~~~~~~~~~~~~~~~~~~ 521 (587)
-+...|-.+....+|+.+|+.+.+.+.- .+|.....++.+++.++.+++.
T Consensus 143 ~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~~a~~~ 193 (521)
T PRK03612 143 LGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLNLLAALVF 193 (521)
T ss_pred hhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 3667788889999999999999888764 5776666666666665555433
|
|
| >KOG0637|consensus | Back alignment and domain information |
|---|
Probab=94.53 E-value=0.037 Score=54.40 Aligned_cols=159 Identities=9% Similarity=-0.045 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHHHHhccchhhHhcHHHHHHhcCCC-cchHHHHHHHHHHHHHHHHhHHHhhcc----cCCchhhH-hhhH
Q psy11547 334 KPFVILMLYFLIYQFSGVNPVTFYAVNIFKDAGAH-VNNNLAAVIMGIVRLIFTIASCIMMKK----MGRRSLTF-ISSI 407 (587)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~i~~~~~g~l~d~----~g~~~~~~-~~~~ 407 (587)
+.++....+.+..+++ +..-..|.+.++.+.|.+ ...........+.+++..++.|..+|| +||||..+ .+..
T Consensus 32 ~~li~v~~ia~Gvqf~-wA~elsy~tPyl~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~ 110 (498)
T KOG0637|consen 32 RKLISVASIAAGVQFG-WALELSYLTPYLQSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSL 110 (498)
T ss_pred HHHHHHHHHHHHHHHH-HHHHhccccHHHHHcCCCcccccccccccccccceecccccccccccccccccccchHHHhhH
Confidence 3444444555555554 556677888888888887 555666677778889999999999996 67776554 4455
Q ss_pred HHHHHHHHHHHHHHhccCCCCCCCcCccchhH---HHHHHHHHHHHHhccccccceeeeeccCCCCchhh-HHHHHHHHH
Q psy11547 408 GCGVSMTGLGLYIFATKDFWPEYKFPAFVSYL---PVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGI-VGGLTTCAC 483 (587)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~-~~g~~~~~~ 483 (587)
...+++.++++.......-..+. -....... .++...++-........|. -++..|+...+.+.+ +++....+.
T Consensus 111 ~i~~~l~Lig~aaDig~~lgd~~-~~~~~~rai~~~~lg~~LLD~A~n~~qgp~-ra~L~Dl~~~d~~~~~Ans~f~~f~ 188 (498)
T KOG0637|consen 111 LIAVSLFLIGYAADIGLLLGDNE-RKPVKPRAIVLFILGFWLLDVANNTLQGPC-RALLADLARGDAKKTRANSVFSFFM 188 (498)
T ss_pred HHHHHHhhhhhHhhhhHHhcCCc-ccccchHHHHHHHHHhHHHHhhhhhhhhhH-HHHHHHhccChhhhhccchhHHHHH
Confidence 55566665555433211000000 00001111 1112222222333344444 378888887777777 888888888
Q ss_pred HHHHHHHHHhhH
Q psy11547 484 HFFIFLTVKSYN 495 (587)
Q Consensus 484 ~~g~~i~~~~~g 495 (587)
.+|+.+|-.+.+
T Consensus 189 avGnvLGY~~g~ 200 (498)
T KOG0637|consen 189 AVGNVLGYALGS 200 (498)
T ss_pred Hhcceeeeeccc
Confidence 888877655544
|
|
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=93.88 E-value=0.97 Score=46.37 Aligned_cols=118 Identities=13% Similarity=0.179 Sum_probs=70.9
Q ss_pred HHHHHHhHHHhhcccCCchhhHhhhHHHHHHHHHHHHHHHhccCC-CCCCC-------cCcc--------chhHHHHHHH
Q psy11547 382 RLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDF-WPEYK-------FPAF--------VSYLPVLMLM 445 (587)
Q Consensus 382 ~~i~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-------~~~~--------~~~~~~~~~~ 445 (587)
.++...+-.++++++++.++.-+..........++++..+...+. +++.. .+.. ..|...++.+
T Consensus 72 a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfYv 151 (491)
T PF03219_consen 72 AILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFYV 151 (491)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHHH
Confidence 455566788899999999887766666666666665543321110 00000 0000 1111111111
Q ss_pred HHHHHHhccccccceeeeeccCCCCchhhHHHHHHHHHHHHHHHHHHhhHHHHH
Q psy11547 446 TFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQT 499 (587)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~ 499 (587)
+.-........-+.|.+++|+++.++..+..++....+++|..+++.+...+.+
T Consensus 152 ~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 152 MAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112222222222457899999999999999999999999999999888877766
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >KOG1237|consensus | Back alignment and domain information |
|---|
Probab=93.65 E-value=2 Score=45.21 Aligned_cols=164 Identities=10% Similarity=0.012 Sum_probs=95.8
Q ss_pred HHHHHhcCCC-cchHHHHHHHHHHHHHHHHhHHHhhccc-CCchhhHhhhHHHHHHHHHHHHHHHhccCCC-------CC
Q psy11547 359 VNIFKDAGAH-VNNNLAAVIMGIVRLIFTIASCIMMKKM-GRRSLTFISSIGCGVSMTGLGLYIFATKDFW-------PE 429 (587)
Q Consensus 359 ~~~~~~~g~~-~~~~~~~~~~~~~~~i~~~~~g~l~d~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~ 429 (587)
.++....+.. ..+......+........+++++++|.+ ||-+.+.++.++..++..++......+.... ..
T Consensus 62 ~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~ 141 (571)
T KOG1237|consen 62 TYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFKPGG 141 (571)
T ss_pred HHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCCCC
Confidence 3334444454 3334445555666677778999999965 7888888888888887666665444321110 00
Q ss_pred CCcCccchh--HHHHHHHHHHHHHhccccccceeeeeccCCC----Cch--hhHHHHHHHHHHHHHHHHHHhhHHHHHhh
Q psy11547 430 YKFPAFVSY--LPVLMLMTFTAASTIGYLVVPWVMIGEVYPT----KVR--GIVGGLTTCACHFFIFLTVKSYNMFQTHL 501 (587)
Q Consensus 430 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~----~~r--~~~~g~~~~~~~~g~~i~~~~~g~l~~~~ 501 (587)
......... ..+...+........+.-|...++-+|-++. +.+ ..-+.......++|..+...+..++.++.
T Consensus 142 ~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~ 221 (571)
T KOG1237|consen 142 NVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQDNV 221 (571)
T ss_pred CcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 000111111 1111222222223334445445777787772 222 35566677777888888888888888889
Q ss_pred hhhhHHHHHHHHHHHHHHHhh
Q psy11547 502 TKEGTFLMYGCISLLGTIFFY 522 (587)
Q Consensus 502 g~~~~~~~~~~~~~~~~~~~~ 522 (587)
+|...|.+..++.+++.++.+
T Consensus 222 ~w~lgf~i~~~~~~lai~iF~ 242 (571)
T KOG1237|consen 222 GWKLGFGIPTVLNALAILIFL 242 (571)
T ss_pred cceeeccHHHHHHHHHHHHHH
Confidence 999888877777766665443
|
|
| >KOG1479|consensus | Back alignment and domain information |
|---|
Probab=92.70 E-value=3.9 Score=40.43 Aligned_cols=46 Identities=7% Similarity=-0.125 Sum_probs=21.8
Q ss_pred HhccchhhHhcHHHHHHhcCCCcchHHHHHHHHHHHHHHHHhHHHh
Q psy11547 347 QFSGVNPVTFYAVNIFKDAGAHVNNNLAAVIMGIVRLIFTIASCIM 392 (587)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~g~l 392 (587)
.....+.+..-.+++....-....+......+.+.+.+..++.-.+
T Consensus 30 ~LlpWN~fiTa~~y~~~~~~~~~~~~~F~~~~~~~a~i~~ll~~~~ 75 (406)
T KOG1479|consen 30 TLLPWNMFITASDYYYYRFPGYHNSKNFTSSYTLAAQIPLLLFNLL 75 (406)
T ss_pred cccchHhhhccHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666666654332223334444444444444444333
|
|
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=92.13 E-value=0.98 Score=45.88 Aligned_cols=112 Identities=17% Similarity=0.091 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHHHHHhHHHhhhccchh-HHHHHhhH---HHHHHHHHHHhcCC-C---CCCcchhhHHhhhhhhccccc
Q psy11547 131 TWIASLSAIGTMVGCVLGGYMMDLVGRK-MTLIITEV---PTILGWALIALAPS-L---PSSILPWIFTGRILTGLGSGM 202 (587)
Q Consensus 131 g~i~s~~~l~~~i~~~~~g~l~dr~Grr-~~l~~~~~---~~~i~~~~~~~~~~-~---~~~~~~~l~~~r~l~G~~~g~ 202 (587)
-.+..++.+|-.+|..+..+.. .-++| +.+.+..+ ++....++|..-+. . .-.+-+..++..++.|+..|-
T Consensus 310 ~i~~~~fNvgD~vGR~~~~~~~-~p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltnGy 388 (437)
T TIGR00939 310 IICFLLFNLFDWLGRSLTSKFM-WPDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSNGY 388 (437)
T ss_pred HHHHHHHHHHHHHHhhhhheeE-eeCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhhhH
Confidence 4556677777777777554331 11223 13332222 23333333332210 0 001122677789999999999
Q ss_pred cccccceeeeeccCCCcchhHhHHHHHHHHHHHHHHHHhhh
Q psy11547 203 VGAPSRIYTAECSQPHLRGMLSSLASFGVSLGVLFEYSLGA 243 (587)
Q Consensus 203 ~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~ 243 (587)
....+..+..+..++++|..+..+...+..+|..+|..++.
T Consensus 389 ~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~ 429 (437)
T TIGR00939 389 LGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSF 429 (437)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988887754
|
|
| >KOG3880|consensus | Back alignment and domain information |
|---|
Probab=89.96 E-value=0.37 Score=44.94 Aligned_cols=128 Identities=16% Similarity=0.155 Sum_probs=78.0
Q ss_pred hHHHHHHHHHHHHHHHHhHHHhhhccchhHHHHHhhHHHHHHHHHHHhcCCCCCCcchhhHHhhhhhhccccccccccce
Q psy11547 130 STWIASLSAIGTMVGCVLGGYMMDLVGRKMTLIITEVPTILGWALIALAPSLPSSILPWIFTGRILTGLGSGMVGAPSRI 209 (587)
Q Consensus 130 ~g~i~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~ 209 (587)
.|.+.-.-.+-..+..+.+....||+---.=..+..++.+.+.++.+++++.+ .-+.+-.+..++.|.-...-.+
T Consensus 64 tg~VLLaDilPsL~iKl~~Pff~~rfpf~~Ri~~~v~~sa~s~~lVafs~s~~-----~sL~GV~~aSissGlGEiTFL~ 138 (409)
T KOG3880|consen 64 TGAVLLADILPSLAIKLTAPFFIHRFPFGFRIALVVLLSALSFFLVAFSNSVP-----MSLLGVVFASISSGLGEITFLA 138 (409)
T ss_pred cchhhhhhhhHHHHHHHhchhhhhhcccchHHHHHHHHHhcceEEEEeccchh-----HHHhhhhhhhhcCCcceeehhh
Confidence 34444455555666666677777876433223344566777888899999988 8888888888888776655444
Q ss_pred eeeeccCCCcchhHhHHHHHHHHHHHHHHHHhhhhh------hHHHHHHHHHHHHHHHHHHhcc
Q psy11547 210 YTAECSQPHLRGMLSSLASFGVSLGVLFEYSLGAFL------SWDTVAAISTIIPVLSIIAGCL 267 (587)
Q Consensus 210 ~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l------~wr~~f~~~~~~~~~~~~~~~~ 267 (587)
+-+. ++ ....+.+..+.+.++++|..--..+ +-|...++...+.++.....++
T Consensus 139 lss~-Y~----~~~i~~WSSGTGgAGliGa~SYa~lT~~~~~spk~Tlli~l~lP~lfa~~yf~ 197 (409)
T KOG3880|consen 139 LSSR-YP----SIVIAGWSSGTGGAGLIGASSYAFLTSWANLSPKSTLLIMLFLPALFAFAYFF 197 (409)
T ss_pred hhcc-CC----CceeccccCCCCcchhhhhhHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHh
Confidence 3332 22 2334444455555555555433333 5677777777776666555555
|
|
| >KOG3880|consensus | Back alignment and domain information |
|---|
Probab=87.95 E-value=0.24 Score=46.11 Aligned_cols=119 Identities=17% Similarity=0.164 Sum_probs=82.1
Q ss_pred CCccCc-chhHHHHHHHHHHHHHHHHhHHHhhhcc-chhHHHHHhhHHHHHHHHHHHhcCCCCCCcchhhHHhhhhhhcc
Q psy11547 122 PYRITS-DESTWIASLSAIGTMVGCVLGGYMMDLV-GRKMTLIITEVPTILGWALIALAPSLPSSILPWIFTGRILTGLG 199 (587)
Q Consensus 122 ~~~~s~-~~~g~i~s~~~l~~~i~~~~~g~l~dr~-Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~r~l~G~~ 199 (587)
++..+. .|.-|....|.+|..+..--.-..--++ ---.++..-.+++.+...+..+.++++ ..++.-+.-|+-
T Consensus 281 g~sls~~sqYRwyqvlYQlGVFiSRSS~~~~~~p~l~~LailQ~vNl~ff~~~a~~~ftpsi~-----ivf~lI~~EGLl 355 (409)
T KOG3880|consen 281 GFSLSKDSQYRWYQVLYQLGVFISRSSINLFTMPYLWLLAILQFVNLLFFLLQAWYWFTPSIW-----IVFALILFEGLL 355 (409)
T ss_pred CCccchhhcchhhheeeeeeEEEEeccceEEechHHHHHHHHHHHHHHHHHHHHHHHhccHHH-----HHHHHHHHHhhc
Confidence 355553 4678888888887655422111111110 001222333344555566677788888 888889999998
Q ss_pred ccccccccceeeeeccCCCcchhHhHHHHHHHHHHHHHHHHhhhhh
Q psy11547 200 SGMVGAPSRIYTAECSQPHLRGMLSSLASFGVSLGVLFEYSLGAFL 245 (587)
Q Consensus 200 ~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l 245 (587)
.|..+....--+.+-.++++|-.+++....+-.+|..++.+++-.+
T Consensus 356 GGasYVNTf~~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~lalpl 401 (409)
T KOG3880|consen 356 GGASYVNTFHNIHKETEPDVREFAMSAVSISDSIGIFLAGLLALPL 401 (409)
T ss_pred CchHHHHHHHHHhhcCCchHHHHhHhhheecchhhHHHHHHHhccc
Confidence 8888888877777778889999999999999999999999887655
|
|
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=86.20 E-value=20 Score=36.47 Aligned_cols=119 Identities=14% Similarity=0.159 Sum_probs=74.0
Q ss_pred HHHHHHHhHHHhhcccCCchhhHhhhHHHHHHHHHHHHHHHhccC-CCCCC--------CcCcc--------chhHHHHH
Q psy11547 381 VRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKD-FWPEY--------KFPAF--------VSYLPVLM 443 (587)
Q Consensus 381 ~~~i~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--------~~~~~--------~~~~~~~~ 443 (587)
++++..++..++.+++.+.++.-+.........+++++..+...+ .+++. +.|.. ..|.....
T Consensus 74 ~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~ 153 (509)
T COG3202 74 SAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKWFILIVGEWSYSLF 153 (509)
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccceeeeEeecchHHHHH
Confidence 456677788889999999888776666666666666655442111 01110 01100 11332233
Q ss_pred HHHHHHHHhccccccceeeeeccCCCCchhhHHHHHHHHHHHHHHHHHHhhHHHHH
Q psy11547 444 LMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQT 499 (587)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~ 499 (587)
..+.-........-+.|....|++..++..+-.++.+...+++..++..+..++..
T Consensus 154 Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k 209 (509)
T COG3202 154 YIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSK 209 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33322233333333556788999999999999999999999999888888777765
|
|
| >PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs | Back alignment and domain information |
|---|
Probab=85.91 E-value=0.19 Score=48.56 Aligned_cols=107 Identities=20% Similarity=0.273 Sum_probs=3.8
Q ss_pred HHHHHHHHHHHHHHHhHHHhhhcc-chhHHHHHh--hHHHHHHHHHHHh----------cCCCCCCcchhhHHhhhhhhc
Q psy11547 132 WIASLSAIGTMVGCVLGGYMMDLV-GRKMTLIIT--EVPTILGWALIAL----------APSLPSSILPWIFTGRILTGL 198 (587)
Q Consensus 132 ~i~s~~~l~~~i~~~~~g~l~dr~-Grr~~l~~~--~~~~~i~~~~~~~----------~~~~~~~~~~~l~~~r~l~G~ 198 (587)
.+..++.++-.+|..+.++.--+- .+|.+...+ =+++....++|.. .++-+ ..++.-++.|+
T Consensus 186 ~~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~~~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~-----~~~i~~~l~g~ 260 (309)
T PF01733_consen 186 VLFLLFNLGDFIGRFLASWPRWPGPSPRWLWILSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDA-----WFIILMLLFGF 260 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhcchhcceeEecccccccHHHHHHHHHHHHHHHHHHHhhcccccCCCcccchH-----HHHHHHHHHHH
Confidence 356678888888888877643211 234433321 1222222223312 12333 67788999999
Q ss_pred cccccccccceeeeeccCCCcchhHhHHHHHHHHHHHHHHHHhhh
Q psy11547 199 GSGMVGAPSRIYTAECSQPHLRGMLSSLASFGVSLGVLFEYSLGA 243 (587)
Q Consensus 199 ~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~ 243 (587)
..|-....+..+..+..++++|..+..+...+..+|..+|..++.
T Consensus 261 TNGyl~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~ls~ 305 (309)
T PF01733_consen 261 TNGYLSTLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVLSF 305 (309)
T ss_dssp ------HHHH-----------------------------------
T ss_pred ccchhhhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998888888888888888887764
|
Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A. |
| >KOG4332|consensus | Back alignment and domain information |
|---|
Probab=84.88 E-value=1.2 Score=40.75 Aligned_cols=51 Identities=14% Similarity=0.009 Sum_probs=32.6
Q ss_pred HhcCCC-cchHHHHHHHHHHHHHHHHhHHHhhcccCCchhhHhhhHHHHHHH
Q psy11547 363 KDAGAH-VNNNLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSM 413 (587)
Q Consensus 363 ~~~g~~-~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~~~~~~~~~~~~~~~~ 413 (587)
+.+|+. .+.+..........++...+.|-+.||.|||+..+.-.+...+++
T Consensus 65 stYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsC 116 (454)
T KOG4332|consen 65 STYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSC 116 (454)
T ss_pred hhcCccCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHH
Confidence 445555 344444444445566777788899999999997655555444444
|
|
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=81.40 E-value=19 Score=36.77 Aligned_cols=72 Identities=15% Similarity=0.094 Sum_probs=33.2
Q ss_pred HhccchhhHhcHHHHHHh--cCCC-cchHHH---HHHHHHHHHHHHHhHHHhhcccCCchhhHhh-hHHHHHHHHHHHH
Q psy11547 347 QFSGVNPVTFYAVNIFKD--AGAH-VNNNLA---AVIMGIVRLIFTIASCIMMKKMGRRSLTFIS-SIGCGVSMTGLGL 418 (587)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~--~g~~-~~~~~~---~~~~~~~~~i~~~~~g~l~d~~g~~~~~~~~-~~~~~~~~~~~~~ 418 (587)
|........--.|.++++ .+.+ .+.+.. ...+++=-+-+.++=...++|+|||+..++- -.++++.++.++.
T Consensus 12 QGiP~GL~~gsiPflL~~~~~~~sy~q~~~fSla~~PfSlKlLWaPiVDs~y~~~~GRRKSWiiP~Q~l~g~~m~~l~~ 90 (544)
T PF13000_consen 12 QGIPLGLAFGSIPFLLQSMAKKVSYSQQAIFSLASYPFSLKLLWAPIVDSVYSKRIGRRKSWIIPIQYLSGILMLYLSY 90 (544)
T ss_pred cCcccccccccchhhhccccCCCChhHheeeeeeechhHHHHhhhhhhhhhcccccCCcchhhhHHHHHHHHHHHHHHh
Confidence 443444333456777776 4444 222221 1222222222223334456789998865543 3444444444443
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 587 | ||||
| 4gby_A | 491 | The Structure Of The Mfs (Major Facilitator Superfa | 3e-38 |
| >pdb|4GBY|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily) Proton:xylose Symporter Xyle Bound To D-Xylose Length = 491 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 587 | |||
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 4e-04 |
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* Length = 417 | Back alignment and structure |
|---|
Score = 41.8 bits (98), Expect = 4e-04
Identities = 55/416 (13%), Positives = 117/416 (28%), Gaps = 64/416 (15%)
Query: 132 WIASLSAIGTMVGCVLGGYMMDLVGRKMTLIITEVPTILGWALIALAPSLPSSILPWIFT 191
I + ++ +++ L G + D +G + L+ + +L + I
Sbjct: 47 IIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWI-ITGMLVMFAPFFIFIFGPLLQYNILV 105
Query: 192 GRILTGLGSGMVGAPSRIYTAECSQPHLR------GMLSSLASFGVSLGVLFEYSLGAFL 245
G I+ G+ G + R G G +LG +
Sbjct: 106 GSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTIN 165
Query: 246 SWDTVAAISTIIPVLSIIAGCLMPESPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQGL 305
+ S +L+++ ++PS
Sbjct: 166 NQFVFWLGSGCALILAVLLFFAKTDAPSSATVA--------------------------- 198
Query: 306 YEFSKRQETQKSRNFKETLAAIVEPACLKPFVILMLYFLIYQFSGVNPVTFYAVNIFKDA 365
+ + + K L +P + ++ Y F+ + F
Sbjct: 199 ---NAVGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFT-SFFATG 254
Query: 366 GAHVNNNLAAVIMGIVRLIFTIASCIMMKKMG----RRSLTFISSIGCGVSMTGLGLYIF 421
+ G V + + + +M R + + + F
Sbjct: 255 EQ------GTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSF 308
Query: 422 ATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTC 481
AT S L V++L T LV + I + + + + C
Sbjct: 309 AT-------------SALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFC 355
Query: 482 ACHFF--IFLTVKSYNMFQTHLTKEGTFLMYGCISLLGTIFFYVYLPETKNKTLQE 535
IF++V + NM++ + +G +L+ G ++L T+ L +L
Sbjct: 356 FFKQLAMIFMSVLAGNMYE-SIGFQGAYLVLGLVALGFTLISVFTLSGPGPLSLLR 410
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 587 | |||
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 100.0 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 100.0 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 100.0 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.98 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.97 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.95 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.95 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.29 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.27 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.27 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.24 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.21 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.2 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.09 |
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-46 Score=390.54 Aligned_cols=437 Identities=26% Similarity=0.473 Sum_probs=346.6
Q ss_pred chHHHHHHHHHHHHhhhhhhccccccHHHHHhhhcCC-----CCCccCcchhHHHHHHHHHHHHHHHHhHHHhhhccchh
Q psy11547 84 KVSLSLTLAVFANLGNVNTGMVFGFSAAATSQLISRD-----SPYRITSDESTWIASLSAIGTMVGCVLGGYMMDLVGRK 158 (587)
Q Consensus 84 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~s~~~~g~i~s~~~l~~~i~~~~~g~l~dr~Grr 158 (587)
+.++.+.+.++++++.+..|+|.+.++..+|.+..+. .+.+.+..+.|++.+++.+|..+|++++|+++||+|||
T Consensus 6 ~~~y~~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk 85 (491)
T 4gc0_A 6 NSSYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRR 85 (491)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHH
T ss_pred ChHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 3456788888889999999999999999988876541 11234456789999999999999999999999999999
Q ss_pred HHHHHhhHHHHHHHHHHHh------------------cCCCCCCcchhhHHhhhhhhccccccccccceeeeeccCCCcc
Q psy11547 159 MTLIITEVPTILGWALIAL------------------APSLPSSILPWIFTGRILTGLGSGMVGAPSRIYTAECSQPHLR 220 (587)
Q Consensus 159 ~~l~~~~~~~~i~~~~~~~------------------~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r 220 (587)
++++++.+++.++++++++ +++++ .++++|+++|+|.|+..+...+++.|+.|+++|
T Consensus 86 ~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~-----~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~r 160 (491)
T 4gc0_A 86 DSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVP-----EFVIYRIIGGIGVGLASMLSPMYIAELAPAHIR 160 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHH-----HHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHH-----HHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhh
Confidence 9999999999999999995 55666 899999999999999999999999999999999
Q ss_pred hhHhHHHHHHHHHHHHHHHHhhhhh------------hHHHHHHHHHHHHHHHHHHhcccCCCchHHHhcCCHHHHHHHH
Q psy11547 221 GMLSSLASFGVSLGVLFEYSLGAFL------------SWDTVAAISTIIPVLSIIAGCLMPESPSWLLSQGRKDACRNSL 288 (587)
Q Consensus 221 ~~~~~~~~~~~~~G~~i~~~l~~~l------------~wr~~f~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~ 288 (587)
++..++.+.+..+|.++++.++..+ .||+.+.+..+..++.++..+++||||+|+..+++.+++.+.+
T Consensus 161 g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l 240 (491)
T 4gc0_A 161 GKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGIL 240 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHH
T ss_pred hhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhH
Confidence 9999999999999999999888765 5899999999998888888888999999999999999999888
Q ss_pred HHHhCCCcchHHHHhhHHHHHHHHHHHhhhhhhHhHHhhhcCCchHHHHHHHHHHHHHHhccchhhHhcHHHHHHhcCCC
Q psy11547 289 RRLRANNYDVEKEVQGLYEFSKRQETQKSRNFKETLAAIVEPACLKPFVILMLYFLIYQFSGVNPVTFYAVNIFKDAGAH 368 (587)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 368 (587)
++....+...+.. .+..+... ...+...+.... ..++.........+.++.+.+.+.+|.+.+.+..+.+
T Consensus 241 ~~~~~~~~~~~~~----~~~~~~~~----~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (491)
T 4gc0_A 241 RKIMGNTLATQAV----QEIKHSLD----HGRKTGGRLLMF--GVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGAS 310 (491)
T ss_dssp HHHHHHHHHHHHH----HHHHHHHH----HHHHHTTHHHHS--CCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCC
T ss_pred HHhcCCchhHHHH----HHHHHHHH----hhhhhhhHHHHh--cccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCC
Confidence 8765432111111 11111100 001111111111 1234455566666777788888999999999888776
Q ss_pred -cchHHHHHHHHHHHHHHHHhHHHhhcccCCchhhHhhhHHHHHHHHHHHHHHHhccCCCCCCCcCccchhHHHHHHHHH
Q psy11547 369 -VNNNLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTF 447 (587)
Q Consensus 369 -~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (587)
........+.++..+++.++++++.||+|||+.+..+...+.++++.++..... ....+..+....++
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~-----------~~~~~~~~~~~~~~ 379 (491)
T 4gc0_A 311 TDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYT-----------QAPGIVALLSMLFY 379 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHT-----------TCCHHHHHHHHHHH
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhc-----------ccchHHHHHHHHHH
Confidence 444566677788899999999999999999999999988888887777665444 23445555666666
Q ss_pred HHHHhccccccceeeeeccCCCCchhhHHHHHHHHHHHHHHHHHHhhHHHHHh------hhhhhHHHHHHHHHHHHHHHh
Q psy11547 448 TAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTH------LTKEGTFLMYGCISLLGTIFF 521 (587)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~------~g~~~~~~~~~~~~~~~~~~~ 521 (587)
..++..++.++.+.+.+|++|++.|+++.|+.+..+++++++++.+++.+.+. .+....|++++++++++.++.
T Consensus 380 ~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~ 459 (491)
T 4gc0_A 380 VAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFM 459 (491)
T ss_dssp HHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence 77777888888889999999999999999999999999999999988776443 345567888999999999988
Q ss_pred heecccCCCCCHHHHHHHHhcCCCC
Q psy11547 522 YVYLPETKNKTLQEIEEQFAGKSKK 546 (587)
Q Consensus 522 ~~~~~~~~~~~~~~~~~~~~~~~~~ 546 (587)
++++||||+|++||+|+.++++.++
T Consensus 460 ~~~~PETkg~tLeei~~~f~~~~~~ 484 (491)
T 4gc0_A 460 WKFVPETKGKTLEELEALWEPETKK 484 (491)
T ss_dssp HHHCCCCTTCCHHHHGGGTC-----
T ss_pred HheecCCCCCCHHHHHHHhCCCCcc
Confidence 9999999999999998887665443
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-37 Score=318.78 Aligned_cols=392 Identities=13% Similarity=0.064 Sum_probs=289.7
Q ss_pred HHHHHHHHHHhhhhhhccccccHHHHHhhhcCCCCCccCcchhHHHHHHHHHHHHHHHHhHHHhhhccchhHHHHHhhHH
Q psy11547 88 SLTLAVFANLGNVNTGMVFGFSAAATSQLISRDSPYRITSDESTWIASLSAIGTMVGCVLGGYMMDLVGRKMTLIITEVP 167 (587)
Q Consensus 88 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~i~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~ 167 (587)
++......+++.+..+++.....+.+|.+.++ + .+..+.|++.+++.++..++++++|+++||+|||++++++.++
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~ 101 (451)
T 1pw4_A 26 RWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQ---G-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLIL 101 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSS---T-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---h-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHH
Confidence 56667777788888899999999999999886 8 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh----cCCCCCCcchhhHHhhhhhhccccccccccceeeeeccCCCcchhHhHHHHHHHHHHHHHHHHhhh
Q psy11547 168 TILGWALIAL----APSLPSSILPWIFTGRILTGLGSGMVGAPSRIYTAECSQPHLRGMLSSLASFGVSLGVLFEYSLGA 243 (587)
Q Consensus 168 ~~i~~~~~~~----~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~ 243 (587)
.+++.+++++ +++++ .++++|+++|++.+...+...+++.|++|+++|++++++...+..+|.++++.+++
T Consensus 102 ~~~~~~~~~~~~~~~~~~~-----~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~ 176 (451)
T 1pw4_A 102 AAAVMLFMGFVPWATSSIA-----VMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFL 176 (451)
T ss_dssp HHHHHHHHHHCHHHHSSSS-----HHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHH
T ss_pred HHHHHHHHHhhhhccccHH-----HHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999 99999 99999999999999999999999999999999999999999999999999999998
Q ss_pred hh----h-HHHHHHHHHHHHHHHHHHh-cccCCCchHHHhcCCHHHHHHHHHHHhCCCcchHHHHhhHHHHHHHHHHHhh
Q psy11547 244 FL----S-WDTVAAISTIIPVLSIIAG-CLMPESPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQGLYEFSKRQETQKS 317 (587)
Q Consensus 244 ~l----~-wr~~f~~~~~~~~~~~~~~-~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (587)
++ + ||+.|++.+++.++..++. +++||+|+....+.+.+. ..+.+.+ ..++.+++..
T Consensus 177 ~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~------~~~~~~~~~~ 239 (451)
T 1pw4_A 177 LGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEY-----------KNDYPDD------YNEKAEQELT 239 (451)
T ss_dssp HHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTT-----------CCC-------------------C
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhh-----------ccccccc------chhhhhcccc
Confidence 75 7 9999999998887766555 448888754321111100 0000000 0000000000
Q ss_pred hhhhHhHHhhhcCCchHHHHHHHHHHHHHHhccchhhHhcHHHHHHh-cCCC-cchHHHHHHHHHHHHHHHHhHHHhhcc
Q psy11547 318 RNFKETLAAIVEPACLKPFVILMLYFLIYQFSGVNPVTFYAVNIFKD-AGAH-VNNNLAAVIMGIVRLIFTIASCIMMKK 395 (587)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~-~~~~~~~~~~~~~~~i~~~~~g~l~d~ 395 (587)
.......+.++++.++ ...+..+...........+.|.++++ .|.+ ...+....+..++.+++.++.+++.||
T Consensus 240 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~ 314 (451)
T 1pw4_A 240 AKQIFMQYVLPNKLLW-----YIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK 314 (451)
T ss_dssp CTHHHHHHTSSCHHHH-----HHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchHHHHHcCHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0111123333333222 22222222333355567778888877 6777 456677888889999999999999999
Q ss_pred c--CCchhhHhhhHHHH-HHHHHHHHHHHhccCCCCCCCcCccchhHHHHHHHHHHHHHhccccccceeeeeccCCCCch
Q psy11547 396 M--GRRSLTFISSIGCG-VSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVR 472 (587)
Q Consensus 396 ~--g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r 472 (587)
+ +||+.+..+..+.. ++++++.. . . ....+......++.+.+.. ...+....++.|.+|++.|
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~--------~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~ 380 (451)
T 1pw4_A 315 VFRGNRGATGVFFMTLVTIATIVYWM---N--P--------AGNPTVDMICMIVIGFLIY-GPVMLIGLHALELAPKKAA 380 (451)
T ss_dssp TSTTCHHHHHHHHHHHHHHHHHHTTS---C--C--------TTCHHHHHHHHHHHHHHHT-HHHHHHHHHHHHTSCTTHH
T ss_pred HhcCCchhHHHHHHHHHHHHHHHHHH---h--c--------ccCHHHHHHHHHHHHHHHh-chHHHHHHHHHHHhchhhh
Confidence 9 99888777666555 44433322 0 0 1123333333333333333 3334445788999999999
Q ss_pred hhHHHHHHHHHHH-HHHHHHHhhHHHHHhhhhhhHHHHHHHHHHHHHHHhhee
Q psy11547 473 GIVGGLTTCACHF-FIFLTVKSYNMFQTHLTKEGTFLMYGCISLLGTIFFYVY 524 (587)
Q Consensus 473 ~~~~g~~~~~~~~-g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 524 (587)
+++.|+.+....+ |..++|.+.|.+.+..|+...|++.+++.+++.++.++.
T Consensus 381 g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 381 GTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999 999999999999999999989988888887777655443
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-35 Score=298.17 Aligned_cols=362 Identities=11% Similarity=-0.019 Sum_probs=276.9
Q ss_pred HHHHHHHhhhhhhccccccHHHHHhhhcCCCCCccCcchhHHHHHHHHHHHHHHHHhHHHhhhccchhHHHHHhhHHHHH
Q psy11547 91 LAVFANLGNVNTGMVFGFSAAATSQLISRDSPYRITSDESTWIASLSAIGTMVGCVLGGYMMDLVGRKMTLIITEVPTIL 170 (587)
Q Consensus 91 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~i~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i 170 (587)
...++++..+..+++.....+.+|.+.++ +|++..+.|++.+++.+++.++++++|+++||+|||++++++.++.++
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~ 103 (438)
T 3o7q_A 27 PFALLCSLFFLWAVANNLNDILLPQFQQA---FTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYAL 103 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---SCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHH---cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHH
Confidence 44455566777788888899999999885 999999999999999999999999999999999999999999999999
Q ss_pred HHHHH---HhcCCCCCCcchhhHHhhhhhhccccccccccceeeeeccCCCcchhHhHHHHHHHHHHHHHHHHhhhhh--
Q psy11547 171 GWALI---ALAPSLPSSILPWIFTGRILTGLGSGMVGAPSRIYTAECSQPHLRGMLSSLASFGVSLGVLFEYSLGAFL-- 245 (587)
Q Consensus 171 ~~~~~---~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l-- 245 (587)
+.+++ +++++++ .++++|+++|++.+...+...+++.|++|+++|++++++.+.+..+|.++++.+++.+
T Consensus 104 ~~~~~~~~~~~~~~~-----~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~ 178 (438)
T 3o7q_A 104 GAALFWPAAEIMNYT-----LFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLIL 178 (438)
T ss_dssp HHHHHHHHHHTTCHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHhccccccHH-----HHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999 8889999 9999999999999999999999999999999999999999999999999999999887
Q ss_pred ---h-------------------------HHHHHHHHHHHHHHHHHHhcc--cCCCchHHHhcCCHHHHHHHHHHHhCCC
Q psy11547 246 ---S-------------------------WDTVAAISTIIPVLSIIAGCL--MPESPSWLLSQGRKDACRNSLRRLRANN 295 (587)
Q Consensus 246 ---~-------------------------wr~~f~~~~~~~~~~~~~~~~--~~esp~~~~~~~~~~~~~~~~~~~~~~~ 295 (587)
+ ||+.|++.+++.++..++.++ .||+++...+++
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~---------------- 242 (438)
T 3o7q_A 179 SNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHSDA---------------- 242 (438)
T ss_dssp TSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTCCCCS----------------
T ss_pred cccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccc----------------
Confidence 2 999998887777666554443 566542100000
Q ss_pred cchHHHHhhHHHHHHHHHHHhhhhhhHhHHhhhcCCchHHHHHHHHHHHHHHhccchhhHhcHHHH-HHhc-CCC-cchH
Q psy11547 296 YDVEKEVQGLYEFSKRQETQKSRNFKETLAAIVEPACLKPFVILMLYFLIYQFSGVNPVTFYAVNI-FKDA-GAH-VNNN 372 (587)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-g~~-~~~~ 372 (587)
+++...+...+.++++..+...+..++.. ........+.|.+ +++. |.+ ...+
T Consensus 243 -------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~g~~~~~~~ 298 (438)
T 3o7q_A 243 -------------------KQGSFSASLSRLARIRHWRWAVLAQFCYV-----GAQTACWSYLIRYAVEEIPGMTAGFAA 298 (438)
T ss_dssp -------------------STTSHHHHHHHHTTCSHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHSTTCCHHHHH
T ss_pred -------------------cccchhhhHHHHHhChHHHHHHHHHHHHH-----HHHHHHHHHHHHHhhhccCCcchhHHH
Confidence 01112234445566555443322222221 2234456677777 7765 777 5567
Q ss_pred HHHHHHHHHHHHHHHhHHHhhcccCCchhhHhhhHHHHHHHHHHHHHHHhccCCCCCCCcCccchhHHHHHHHHHHHHHh
Q psy11547 373 LAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAAST 452 (587)
Q Consensus 373 ~~~~~~~~~~~i~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (587)
....+..++.+++.++.+++.||++||+.+..+.++.+++.+++.. ... ........+.+.+..
T Consensus 299 ~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~---------------~~~-~~~~~~~~~~g~~~~ 362 (438)
T 3o7q_A 299 NYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAF---------------AGG-HVGLIALTLCSAFMS 362 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH---------------CCH-HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH---------------cCC-cHHHHHHHHHHHHHH
Confidence 7788888999999999999999999999998888877777666554 112 222333334443333
Q ss_pred ccccccceeeeeccCCCCchhhHHHHHHHHHHHHHHHHHHhhHHHHHhhh-hhhHHHHHHHHHHHHHH
Q psy11547 453 IGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLT-KEGTFLMYGCISLLGTI 519 (587)
Q Consensus 453 ~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~ 519 (587)
...+..+++..|.+|++ ++.+.++.. .+.+|..++|.+.|.+.|..| +...|.+.+++.++..+
T Consensus 363 -~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~ 427 (438)
T 3o7q_A 363 -IQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFI 427 (438)
T ss_dssp -THHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 34456668888999977 888888877 677999999999999999999 88888876555544433
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.98 E-value=1.5e-30 Score=269.77 Aligned_cols=392 Identities=10% Similarity=0.067 Sum_probs=250.4
Q ss_pred CCccCcchhHHHHHHHHHHHHHHHHhHHHhhhc-cchhHHHHHhhHHHHHHHHHHHhcCCCCCCcchhhHHhhhhhhccc
Q psy11547 122 PYRITSDESTWIASLSAIGTMVGCVLGGYMMDL-VGRKMTLIITEVPTILGWALIALAPSLPSSILPWIFTGRILTGLGS 200 (587)
Q Consensus 122 ~~~~s~~~~g~i~s~~~l~~~i~~~~~g~l~dr-~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~ 200 (587)
|+|.+..+.+++.+++.++..++++++|+++|| +|||+++.++.++.+++.++++++++++ .++++|+++|++.
T Consensus 48 ~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~g~~~ 122 (491)
T 4aps_A 48 DLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGAS-----ALFGSIILIIIGT 122 (491)
T ss_dssp SCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTT-----HHHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHH-----HHHHHHHHHHHHH
Confidence 489999999999999999999999999999999 8999999999999999999999999999 9999999999999
Q ss_pred cccccccceeeeeccCCCc--chhHhHHHHHHHHHHHHHHHHhhhhh----hHHHHHHHHHHHHHHHHHHhcc-cCCCc-
Q psy11547 201 GMVGAPSRIYTAECSQPHL--RGMLSSLASFGVSLGVLFEYSLGAFL----SWDTVAAISTIIPVLSIIAGCL-MPESP- 272 (587)
Q Consensus 201 g~~~~~~~~~i~e~~~~~~--r~~~~~~~~~~~~~G~~i~~~l~~~l----~wr~~f~~~~~~~~~~~~~~~~-~~esp- 272 (587)
+...+...+++.|++|+++ |+.++++++.+.++|.+++|.+++.+ +||+.|++.++..++..++.++ .++..
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 202 (491)
T 4aps_A 123 GFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLD 202 (491)
T ss_dssp HHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCccccc
Confidence 9999999999999999988 77788889999999999999999987 8999999988777666555443 22111
Q ss_pred ---hHHHhcCCHHHHHHHHHH----------------HhCC-CcchHHHHhhHHHHHHHHH-HHhhhhhhHhHHhhhcCC
Q psy11547 273 ---SWLLSQGRKDACRNSLRR----------------LRAN-NYDVEKEVQGLYEFSKRQE-TQKSRNFKETLAAIVEPA 331 (587)
Q Consensus 273 ---~~~~~~~~~~~~~~~~~~----------------~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 331 (587)
+....+.+.++..+..+. .... +.+................ .....+.+......+++.
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (491)
T 4aps_A 203 PHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTSTEHLRV 282 (491)
T ss_dssp SCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC------------C
T ss_pred ccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 000111122333222221 1111 1111100000000000000 000000000000011111
Q ss_pred chHHHHHHHHHHHHHHhccchhhHhcHHHHHHh-cCCC-cchHHHHHHHHHHHHHHHHhHHHhhcccCCchhhH-----h
Q psy11547 332 CLKPFVILMLYFLIYQFSGVNPVTFYAVNIFKD-AGAH-VNNNLAAVIMGIVRLIFTIASCIMMKKMGRRSLTF-----I 404 (587)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~-~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~~~~~~-----~ 404 (587)
.. ....... .+..+..+.....+.+.+..+ .+.+ ...+.......+..+++.++.+++.||++||+... .
T Consensus 283 ~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~ 359 (491)
T 4aps_A 283 VS--YIPLFIA-AVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAV 359 (491)
T ss_dssp TT--HHHHHHH-HHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHH
T ss_pred HH--HHHHHHH-HHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHH
Confidence 11 1111111 111111233344455656655 4555 45667777788888899999999999999987554 5
Q ss_pred hhHHHHHHHHHHHHHHHhccCCCCCCCcCccchhHHHHHHHHHHHHHhccccccceeeeeccCCCCchhhHHHHHHHHHH
Q psy11547 405 SSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACH 484 (587)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~ 484 (587)
+.++.+++.+++.......... .....+.......+.+.+. ....+..+.++.|.+|++.|+++.|+.+....
T Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~l~g~~~-~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 432 (491)
T 4aps_A 360 GLMFAGLSFLLMAIPGALYGTS------GKVSPLWLVGSWALVILGE-MLISPVGLSVTTKLAPKAFNSQMMSMWFLSSS 432 (491)
T ss_dssp HHHHHHHHHTTTHHHHHHCCCC------TTCCTHHHHHHHHHHHHHH-HTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCC------CCccHHHHHHHHHHHHHHH-HHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 5555566555554432221100 0112233333333333333 33345556899999999999999999999999
Q ss_pred HHHHHHHHhhHHHHHhhhhhhHHHHHHHHHHHHHHHhheecccCC
Q psy11547 485 FFIFLTVKSYNMFQTHLTKEGTFLMYGCISLLGTIFFYVYLPETK 529 (587)
Q Consensus 485 ~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 529 (587)
+|.++++.+.+.+.+. ++...|.+.+++++++.++.+++.++.+
T Consensus 433 ~g~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (491)
T 4aps_A 433 VGSALNAQLVTLYNAK-SEVAYFSYFGLGSVVLGIVLVFLSKRIQ 476 (491)
T ss_dssp HHHHHHHHHGGGGGGS-STTHHHHHTHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999877654 6677888888887777776666555443
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.5e-32 Score=270.30 Aligned_cols=351 Identities=13% Similarity=0.094 Sum_probs=256.3
Q ss_pred HHHHHhhhhhhccccccHHHHHhhhcCCCCCccCcchhHHHHHHHHHHHHHHHHhHHHhhhccchhHHHHHhhHHHHHHH
Q psy11547 93 VFANLGNVNTGMVFGFSAAATSQLISRDSPYRITSDESTWIASLSAIGTMVGCVLGGYMMDLVGRKMTLIITEVPTILGW 172 (587)
Q Consensus 93 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~i~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~ 172 (587)
+..+++.+..+++.....+.+|.+.++ +|.+..+.+++.+.+.++..++++++|+++||+|||+++..+.++.+++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~ 79 (375)
T 2gfp_A 3 LMLVLLVAVGQMAQTIYIPAIADMARD---LNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLAT 79 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTT---SSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHH---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHH
Confidence 345566677778888888999998885 99999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCCcchhhHHhhhhhhccccccccccceeeeeccCCCcchhHhHHHHHHHHHHHHHHHHhhhhh----hHH
Q psy11547 173 ALIALAPSLPSSILPWIFTGRILTGLGSGMVGAPSRIYTAECSQPHLRGMLSSLASFGVSLGVLFEYSLGAFL----SWD 248 (587)
Q Consensus 173 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l----~wr 248 (587)
++.+++++++ .++++|+++|++.+...+...+++.|++|+++|++++++.+.+..+|.+++|.+++++ +||
T Consensus 80 ~~~~~~~~~~-----~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ 154 (375)
T 2gfp_A 80 LVAVTTSSLT-----VLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWR 154 (375)
T ss_dssp HHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred HHHHHhccHH-----HHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHH
Confidence 9999999998 9999999999999999999999999999999999999999999999999999999987 899
Q ss_pred HHHHHHHHHHHHHHHHh-cccCCCchHHHhcCCHHHHHHHHHHHhCCCcchHHHHhhHHHHHHHHHHHhhhhhhHhHHhh
Q psy11547 249 TVAAISTIIPVLSIIAG-CLMPESPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQGLYEFSKRQETQKSRNFKETLAAI 327 (587)
Q Consensus 249 ~~f~~~~~~~~~~~~~~-~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (587)
+.|++.+++.++..+.. +++||++++..++ ++..+...+.+
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------~~~~~~~~~~~ 196 (375)
T 2gfp_A 155 ACYLFLLVLCAGVTFSMARWMPETRPVDAPR--------------------------------------TRLLTSYKTLF 196 (375)
T ss_dssp HHHHHHHHHHHHHHCCCCCSSCCCSTTTCCC--------------------------------------CCTTTCSTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCcccCCCCccc--------------------------------------ccHHHHHHHHh
Confidence 99999998888777644 4488876421000 00111223333
Q ss_pred hcCCchHHHHHHHHHHHHHHhccchhhHhcHHHHHHh-cCCC-cchHHHHHHHHHHHHHHHHhHHHhhcccCCchhhHhh
Q psy11547 328 VEPACLKPFVILMLYFLIYQFSGVNPVTFYAVNIFKD-AGAH-VNNNLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFIS 405 (587)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~-~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~~~~~~~~ 405 (587)
+++..+...+... ...........+.|.++++ .|.+ ...+.......++.+++.++.+++.||++++ +..+
T Consensus 197 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~--~~~~ 269 (375)
T 2gfp_A 197 GNSGFNCYLLMLI-----GGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTL--MWQS 269 (375)
T ss_dssp HHHHHHHHHHHHH-----HHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHH--HHHH
T ss_pred cCcchHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH
Confidence 3333322222211 1122233444555555554 5555 3456677778888899999999999998872 2222
Q ss_pred hHH-HHHHHHHHHHHHHhccCCCCCCCcCccchhHHHHHHHHHHHHHhccccccceeeeeccCCCCchhhHHHHHHHHHH
Q psy11547 406 SIG-CGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACH 484 (587)
Q Consensus 406 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~ 484 (587)
... ...+...+...... ..+.+.......+.+.+.+. ..+...+++.|.+| +.|+++.|+.+....
T Consensus 270 ~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~ 336 (375)
T 2gfp_A 270 VICCLLAGLLMWIPDWFG-----------VMNVWTLLVPAALFFFGAGM-LFPLATSGAMEPFP-FLAGTAGALVGGLQN 336 (375)
T ss_dssp HHHHHHTSSSSSHHHHHH-----------HHHHHHHHHHHHHHHHHHHH-TSSTTHHHHHTHHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhc-----------cccHHHHHHHHHHHHHHHHH-hhHHHHHHHHHhCC-cccchHHHHHHHHHH
Confidence 222 22222111111100 01223333333444444443 34555688899998 889999999999999
Q ss_pred HHHHHHHHhhHHHHHhhhhhhHHHH
Q psy11547 485 FFIFLTVKSYNMFQTHLTKEGTFLM 509 (587)
Q Consensus 485 ~g~~i~~~~~g~l~~~~g~~~~~~~ 509 (587)
+|..++|.+.|.+.+..++...+.+
T Consensus 337 ~g~~~~~~~~g~l~~~~~~~~~~~~ 361 (375)
T 2gfp_A 337 IGSGVLASLSAMLPQTGQGSLGLLM 361 (375)
T ss_dssp HHHHCCSTTCTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCcccHHHHH
Confidence 9999999999999887777655554
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.7e-27 Score=245.53 Aligned_cols=138 Identities=18% Similarity=0.248 Sum_probs=127.6
Q ss_pred cCcchhHHHHHHHHHHHHHHHHhHHHhhhcc-chhHHHHHhhHHHHHHHHHHHhcC-CCCCCcchhhHHhhhhhhccccc
Q psy11547 125 ITSDESTWIASLSAIGTMVGCVLGGYMMDLV-GRKMTLIITEVPTILGWALIALAP-SLPSSILPWIFTGRILTGLGSGM 202 (587)
Q Consensus 125 ~s~~~~g~i~s~~~l~~~i~~~~~g~l~dr~-Grr~~l~~~~~~~~i~~~~~~~~~-~~~~~~~~~l~~~r~l~G~~~g~ 202 (587)
.+..+.|++.+++.++..++.+++|+++||+ |||+++.++.++.+++.+++++++ +++ .++++|++.|++.+.
T Consensus 51 ~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~g~~~~~ 125 (524)
T 2xut_A 51 LRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQ-----GFYTGLFLIALGSGG 125 (524)
T ss_dssp TTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHH-----HHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHH-----HHHHHHHHHHHhccc
Confidence 9999999999999999999999999999999 999999999999999999999998 888 899999999999999
Q ss_pred cccccceeeeeccCCCcchhHhHH---HHHHHHHHHHHHHHhhhhh----hHHHHHHHHHHHHHHHHHHhcc
Q psy11547 203 VGAPSRIYTAECSQPHLRGMLSSL---ASFGVSLGVLFEYSLGAFL----SWDTVAAISTIIPVLSIIAGCL 267 (587)
Q Consensus 203 ~~~~~~~~i~e~~~~~~r~~~~~~---~~~~~~~G~~i~~~l~~~l----~wr~~f~~~~~~~~~~~~~~~~ 267 (587)
..+...+++.|++|+++|+++.+. ...+.++|.+++|.+++.+ +||+.|++.+++.++..++.++
T Consensus 126 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 126 IKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWL 197 (524)
T ss_dssp THHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHS
T ss_pred cchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999876666 8999999999999999887 8999999988887766655544
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-28 Score=249.62 Aligned_cols=362 Identities=11% Similarity=0.075 Sum_probs=223.7
Q ss_pred HHHHHhhhcCCCCCccCcchhHHHHHHHHHHHHHHHHhHHHhhhccchhHHHHHhhHHHHHHHH---HHHhcCCC-CCCc
Q psy11547 110 AAATSQLISRDSPYRITSDESTWIASLSAIGTMVGCVLGGYMMDLVGRKMTLIITEVPTILGWA---LIALAPSL-PSSI 185 (587)
Q Consensus 110 ~~~~~~~~~~~~~~~~s~~~~g~i~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~---~~~~~~~~-~~~~ 185 (587)
.+.+|.+..+ ++|++..+.|++.+++.++..++++++|+++||+|||++++++.++++++.. ..++++.. .
T Consensus 27 ~~~~~~~l~~--~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~--- 101 (417)
T 2cfq_A 27 FPFFPIWLHD--INHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQY--- 101 (417)
T ss_dssp TTTHHHHHHT--TTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHT---
T ss_pred HHHHHHHHHH--HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 3556664443 4899999999999999999999999999999999999999998887655321 11222111 1
Q ss_pred chhhHHhhhhhhccccccccccceeeeeccCC--CcchhHhHHHHHHHHHHHHHHHHhhhhh---hHHHHHHHHHHHHHH
Q psy11547 186 LPWIFTGRILTGLGSGMVGAPSRIYTAECSQP--HLRGMLSSLASFGVSLGVLFEYSLGAFL---SWDTVAAISTIIPVL 260 (587)
Q Consensus 186 ~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~--~~r~~~~~~~~~~~~~G~~i~~~l~~~l---~wr~~f~~~~~~~~~ 260 (587)
.++..+++.|++.+..++.....+.++.++ ++|+...+....+..+|..++|.+++++ +||+.|++.++..++
T Consensus 102 --~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~~~~f~~~~~~~~~ 179 (417)
T 2cfq_A 102 --NILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALI 179 (417)
T ss_dssp --TCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHHHCSHHHHTTTTTTTTT
T ss_pred --HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHH
Confidence 233456666665555544444445555443 3456677777777888889999888877 799999988777665
Q ss_pred HHHHhcccC-CCchHHHhcCCHHHHHHHHHHHhCCCcchHHHHhhHHHHHHHHHHHhhhhhhHhHHhhhcCCchHHHHHH
Q psy11547 261 SIIAGCLMP-ESPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQGLYEFSKRQETQKSRNFKETLAAIVEPACLKPFVIL 339 (587)
Q Consensus 261 ~~~~~~~~~-esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (587)
..+..++.+ |+++. .++.+.+ ..+ +++...+...+.++++..+...+..
T Consensus 180 ~~~~~~~~~~~~~~~-~~~~~~~----------~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (417)
T 2cfq_A 180 LAVLLFFAKTDAPSS-ATVANAV----------GAN-------------------HSAFSLKLALELFRQPKLWFLSLYV 229 (417)
T ss_dssp HHHHSCSSCCCCSCS-SCSSSSS----------SSC-------------------CCCCCHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcCcccccc-ccccccc----------ccc-------------------cccccHHHHHHHhcCCchhhHHHHH
Confidence 555555544 43211 0000000 000 0011112233445554433322211
Q ss_pred HHHHHHHHhccchhhHhcHHHHHHhc-CCC----cchHHHHHHHHHHHHHHHHhHHHhhcccCCchhhHhhhHHHHHHHH
Q psy11547 340 MLYFLIYQFSGVNPVTFYAVNIFKDA-GAH----VNNNLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMT 414 (587)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~----~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~ 414 (587)
+.... .+.....+.|.++.+. +.. ...+....+..+..+++.++.+++.||+|||+++..+.++.+++.+
T Consensus 230 ~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~ 304 (417)
T 2cfq_A 230 IGVSC-----TYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRII 304 (417)
T ss_dssp HHHHH-----HHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-----HHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHH
Confidence 11111 1222233355555442 211 1123445556677888899999999999999988877776666544
Q ss_pred HHHHHHHhccCCCCCCCcCccchhHHHHHHHHHHHHHhccccccceeeeeccCCCCchhhHHHHH-HHHHHHHHHHHHHh
Q psy11547 415 GLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLT-TCACHFFIFLTVKS 493 (587)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~-~~~~~~g~~i~~~~ 493 (587)
.+.. ....+...+...+...+.. ...+..+.++.|.+|++.|+++.++. +....+|++++|.+
T Consensus 305 ~~~~---------------~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l 368 (417)
T 2cfq_A 305 GSSF---------------ATSALEVVILKTLHMFEVP-FLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVL 368 (417)
T ss_dssp HHTT---------------CCSHHHHHHHTTHHHHHHH-HHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHH
T ss_pred HHHH---------------hccHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhh
Confidence 4432 1122222222222222222 12223357889999999999999994 78888999999999
Q ss_pred hHHHHHhhhhhhHHHHHHHHHHHHHHHhheecccCC
Q psy11547 494 YNMFQTHLTKEGTFLMYGCISLLGTIFFYVYLPETK 529 (587)
Q Consensus 494 ~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 529 (587)
.|.+.+..|+...|.+.+++++++.++.++..++++
T Consensus 369 ~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~ 404 (417)
T 2cfq_A 369 AGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp HHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 999999888888888888888877776655555433
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.29 E-value=6.9e-12 Score=127.79 Aligned_cols=154 Identities=14% Similarity=0.123 Sum_probs=129.8
Q ss_pred ccHHHHHhhhcCCCCCccCcchhHHHHHHHHHHHHHHHHhHHHhhhcc--chhHHHHHhhHHHH-HHHHHHHhcC--CCC
Q psy11547 108 FSAAATSQLISRDSPYRITSDESTWIASLSAIGTMVGCVLGGYMMDLV--GRKMTLIITEVPTI-LGWALIALAP--SLP 182 (587)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~s~~~~g~i~s~~~l~~~i~~~~~g~l~dr~--Grr~~l~~~~~~~~-i~~~~~~~~~--~~~ 182 (587)
.....+|.+..+ .+|.+..+.+++.+...++..++.++.|++.||+ |||+.+.++.++.. ++.++..+.+ +.+
T Consensus 270 ~~~~~~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (451)
T 1pw4_A 270 GILDWSPTYLKE--VKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPT 347 (451)
T ss_dssp HHHHHHHHHBTT--BSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHH
T ss_pred HHHHHHHHHHHH--hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHH
Confidence 344566666654 4789999999999999999999999999999999 99999988877776 6666666654 333
Q ss_pred CCcchhhHHhhhhhhccccccccccceeeeeccCCCcchhHhHHHHHHHHH-HHHHHHHhhhhh----hHHHHHHHHHHH
Q psy11547 183 SSILPWIFTGRILTGLGSGMVGAPSRIYTAECSQPHLRGMLSSLASFGVSL-GVLFEYSLGAFL----SWDTVAAISTII 257 (587)
Q Consensus 183 ~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~-G~~i~~~l~~~l----~wr~~f~~~~~~ 257 (587)
.+.+..++.|++.+...+...+++.|.+|+++|++++++......+ |..+++.+.+.+ +|+..|++.+++
T Consensus 348 -----~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~ 422 (451)
T 1pw4_A 348 -----VDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGG 422 (451)
T ss_dssp -----HHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 6777888999988888888889999999999999999999999999 999999999887 899999998888
Q ss_pred HHHHHHHhccc
Q psy11547 258 PVLSIIAGCLM 268 (587)
Q Consensus 258 ~~~~~~~~~~~ 268 (587)
.++..++.+++
T Consensus 423 ~~~~~~~~~~~ 433 (451)
T 1pw4_A 423 SILAVILLIVV 433 (451)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 87776665543
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.27 E-value=1.2e-11 Score=122.60 Aligned_cols=163 Identities=9% Similarity=-0.047 Sum_probs=125.0
Q ss_pred chhhHhcHHHHHHhcCCC-cchHHHHHHHHHHHHHHHHhHHHhhcccCCchhhHhhhHHHHHHHHHHHHHHHhccCCCCC
Q psy11547 351 VNPVTFYAVNIFKDAGAH-VNNNLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPE 429 (587)
Q Consensus 351 ~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (587)
........|.+.++.|.+ .+.+.......++..++.++.|++.||+|||+.+..+.++..++.++....
T Consensus 16 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~---------- 85 (375)
T 2gfp_A 16 QTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTT---------- 85 (375)
T ss_dssp HHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHH----------
T ss_pred HHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHh----------
Confidence 444555567777778887 456778888899999999999999999999999999999888888777662
Q ss_pred CCcCccchhHHHHHHHHHHHHHhccccccceeeeeccCCCCchhhHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhHHHH
Q psy11547 430 YKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHLTKEGTFLM 509 (587)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~ 509 (587)
.+.+.......+.+.+. ....+...+++.|.+|++.|+++.++.+....+|..++|.+.+.+.+..||+..|.+
T Consensus 86 -----~~~~~l~~~~~l~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~ 159 (375)
T 2gfp_A 86 -----SSLTVLIAASAMQGMGT-GVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLF 159 (375)
T ss_dssp -----HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHH
T ss_pred -----ccHHHHHHHHHHHHHHH-HhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHH
Confidence 12233333333333333 334455568899999999999999999999999999999999999988899999998
Q ss_pred HHHHHHHHHHHhheecccCC
Q psy11547 510 YGCISLLGTIFFYVYLPETK 529 (587)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~ 529 (587)
.+++.++..+...+..||++
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~ 179 (375)
T 2gfp_A 160 LLVLCAGVTFSMARWMPETR 179 (375)
T ss_dssp HHHHHHHHHCCCCCSSCCCS
T ss_pred HHHHHHHHHHHHHHHCcccC
Confidence 88877776665555555543
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=5.9e-11 Score=120.34 Aligned_cols=158 Identities=11% Similarity=0.026 Sum_probs=120.6
Q ss_pred chhhHhcHHHHHHhcCCC-cchHHHHHHHHHHHHHHHHhHHHhhcccCCchhhHhhhHHHHHHHHHHHHHHHhccCCCCC
Q psy11547 351 VNPVTFYAVNIFKDAGAH-VNNNLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPE 429 (587)
Q Consensus 351 ~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (587)
........|.+.++.|.+ .+.+.......++..++.++.|++.||+|||+.+.++.++.+++.++.......
T Consensus 42 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~------- 114 (438)
T 3o7q_A 42 NNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEI------- 114 (438)
T ss_dssp HHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHT-------
T ss_pred HHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhcccc-------
Confidence 455666778888888888 566788888999999999999999999999999999999988888777332211
Q ss_pred CCcCccchhHHHHHHHHHHHHHhccccccceeeeeccCCCCchhhHHHHHHHHHHHHHHHHHHhhHHHH-Hhhh------
Q psy11547 430 YKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQ-THLT------ 502 (587)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~-~~~g------ 502 (587)
.+.+..++..++.+.+.+. ..+...+++.|.+|++.|+.+.++.+....+|..+++.+.+.+. +..+
T Consensus 115 -----~~~~~l~~~~~l~G~~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~ 188 (438)
T 3o7q_A 115 -----MNYTLFLVGLFIIAAGLGC-LETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDV 188 (438)
T ss_dssp -----TCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHH
T ss_pred -----ccHHHHHHHHHHHHhhHHH-hhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccc
Confidence 2334444444444444443 34455689999999999999999999999999999999999988 5444
Q ss_pred -------------------hhhHHHHHHHHHHHHHHHh
Q psy11547 503 -------------------KEGTFLMYGCISLLGTIFF 521 (587)
Q Consensus 503 -------------------~~~~~~~~~~~~~~~~~~~ 521 (587)
|++.|++.+++.++..++.
T Consensus 189 ~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~ 226 (438)
T 3o7q_A 189 LDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLI 226 (438)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 7778877766665555443
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.24 E-value=8.6e-11 Score=121.11 Aligned_cols=158 Identities=9% Similarity=0.038 Sum_probs=118.9
Q ss_pred chhhHhcHHHHHHh------cCCC-cchHHHHHHHHHHHHHHHHhHHHhhcc-cCCchhhHhhhHHHHHHHHHHHHHHHh
Q psy11547 351 VNPVTFYAVNIFKD------AGAH-VNNNLAAVIMGIVRLIFTIASCIMMKK-MGRRSLTFISSIGCGVSMTGLGLYIFA 422 (587)
Q Consensus 351 ~~~~~~~~~~~~~~------~g~~-~~~~~~~~~~~~~~~i~~~~~g~l~d~-~g~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (587)
++....+.+.++.+ .|.+ .+.+.......++..++.++.|+++|| +|||+++..+.++.+++.+++..
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~---- 104 (491)
T 4aps_A 29 YYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLAL---- 104 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHS----
T ss_pred HHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHH----
Confidence 33444445555544 6777 566788888999999999999999999 89999999999888888777655
Q ss_pred ccCCCCCCCcCccchhHHHHHHHHHHHHHhccccccceeeeeccCCCCc--hhhHHHHHHHHHHHHHHHHHHhhHHHHHh
Q psy11547 423 TKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKV--RGIVGGLTTCACHFFIFLTVKSYNMFQTH 500 (587)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--r~~~~g~~~~~~~~g~~i~~~~~g~l~~~ 500 (587)
..+.+...+..++.+.+.+. ..+...+++.|.+|++. |+.+.++.+....+|..++|.+.+.+.+.
T Consensus 105 -----------~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~ 172 (491)
T 4aps_A 105 -----------PFGASALFGSIILIIIGTGF-LKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEA 172 (491)
T ss_dssp -----------CCSTTHHHHHHHHHHHHHHH-HHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----------hhhHHHHHHHHHHHHHHHHh-ccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhh
Confidence 22334444444444444333 34555689999999988 77788888999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHHHHHhhee
Q psy11547 501 LTKEGTFLMYGCISLLGTIFFYVY 524 (587)
Q Consensus 501 ~g~~~~~~~~~~~~~~~~~~~~~~ 524 (587)
.||++.|++.+++.+++.++..+.
T Consensus 173 ~g~~~~f~~~~~~~~~~~~~~~~~ 196 (491)
T 4aps_A 173 AGYHVAFSLAAIGMFIGLLVYYFG 196 (491)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999998877766665554433
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.21 E-value=1.4e-10 Score=120.52 Aligned_cols=156 Identities=12% Similarity=0.072 Sum_probs=116.8
Q ss_pred hhhHhcHHHHHH-hcC------CC-cchHHHHHHHHHHHHHHHHhHHHhhccc-CCchhhHhhhHHHHHHHHHHHHHHHh
Q psy11547 352 NPVTFYAVNIFK-DAG------AH-VNNNLAAVIMGIVRLIFTIASCIMMKKM-GRRSLTFISSIGCGVSMTGLGLYIFA 422 (587)
Q Consensus 352 ~~~~~~~~~~~~-~~g------~~-~~~~~~~~~~~~~~~i~~~~~g~l~d~~-g~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (587)
+....+.+.++. +.| .+ .+.+.......++..++.++.|+++||+ |||+++.++.++.+++.+++.+
T Consensus 29 ~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~---- 104 (524)
T 2xut_A 29 YGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAI---- 104 (524)
T ss_dssp HHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH----
Confidence 334445555544 567 77 5667888888999999999999999999 9999999988888888777665
Q ss_pred ccCCCCCCCcCcc-chhHHHHHHHHHHHHHhccccccceeeeeccCCCCchhhHHHH---HHHHHHHHHHHHHHhhHHHH
Q psy11547 423 TKDFWPEYKFPAF-VSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGL---TTCACHFFIFLTVKSYNMFQ 498 (587)
Q Consensus 423 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~---~~~~~~~g~~i~~~~~g~l~ 498 (587)
.. +.+..++..++.+.+. ....+...+++.|.+|++.|+.+.+. .+....+|..++|.+.+.+.
T Consensus 105 -----------~~~~~~~~~~~~~l~g~~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~ 172 (524)
T 2xut_A 105 -----------FEHSVQGFYTGLFLIALGS-GGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLL 172 (524)
T ss_dssp -----------TSSCHHHHHHHHHHHHHHH-HTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHH
T ss_pred -----------hcccHHHHHHHHHHHHHhc-cccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 22 3333333334443333 33445556899999999999776666 88889999999999999999
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHhhe
Q psy11547 499 THLTKEGTFLMYGCISLLGTIFFYV 523 (587)
Q Consensus 499 ~~~g~~~~~~~~~~~~~~~~~~~~~ 523 (587)
+..||+..|++.+++.++..++.++
T Consensus 173 ~~~g~~~~f~~~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 173 KNFGAAVAFGIPGVLMFVATVFFWL 197 (524)
T ss_dssp HTSCHHHHHHHHHHHHHHHHHHHHS
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHH
Confidence 9899999999888777666555443
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=1.2e-11 Score=124.48 Aligned_cols=142 Identities=8% Similarity=0.069 Sum_probs=118.8
Q ss_pred CcchhHHHHHHHHHHHHHHHHhHHHhhhccchhHHHHHhhHHHHHHHHHHHhcCCCCCCcchhhHHhhhhhhcccccccc
Q psy11547 126 TSDESTWIASLSAIGTMVGCVLGGYMMDLVGRKMTLIITEVPTILGWALIALAPSLPSSILPWIFTGRILTGLGSGMVGA 205 (587)
Q Consensus 126 s~~~~g~i~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~ 205 (587)
+....+++.++..++..++.++.|+++||+|||+++..+.++.+++.++.++.++.+ .+++..++.|++.+...+
T Consensus 257 ~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~ 331 (417)
T 2cfq_A 257 GTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSAL-----EVVILKTLHMFEVPFLLV 331 (417)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHH-----HHHHHTTHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHH-----HHHHHHHHHHHHHHHHHH
Confidence 455678888888899999999999999999999999999988888877777777766 777888888887776667
Q ss_pred ccceeeeeccCCCcchhHhHH-HHHHHHHHHHHHHHhhhhh----hHHHHHHHHHHHHHHHHHHhcc-cCCCc
Q psy11547 206 PSRIYTAECSQPHLRGMLSSL-ASFGVSLGVLFEYSLGAFL----SWDTVAAISTIIPVLSIIAGCL-MPESP 272 (587)
Q Consensus 206 ~~~~~i~e~~~~~~r~~~~~~-~~~~~~~G~~i~~~l~~~l----~wr~~f~~~~~~~~~~~~~~~~-~~esp 272 (587)
....++.|.+|++.|+.+.++ ++....+|.+++|.+++.+ +++..|.+.+++.++..++.++ .||.+
T Consensus 332 ~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~ 404 (417)
T 2cfq_A 332 GCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 778899999999999999998 4778889999999999877 7888999888888777666554 66654
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=2.2e-10 Score=117.98 Aligned_cols=159 Identities=14% Similarity=0.067 Sum_probs=112.0
Q ss_pred HHHHHhhhcCCCCCccCcchhHHHHHHHHHHHHHHHHhHHHhhhccchhHHHHHhhHHHHHHHHHHHhcCCCCCCcchhh
Q psy11547 110 AAATSQLISRDSPYRITSDESTWIASLSAIGTMVGCVLGGYMMDLVGRKMTLIITEVPTILGWALIALAPSLPSSILPWI 189 (587)
Q Consensus 110 ~~~~~~~~~~~~~~~~s~~~~g~i~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~l 189 (587)
....|.+... .+.+............+...++.++++++.||+|||+.++.+.....++.+..+............+
T Consensus 297 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 373 (491)
T 4gc0_A 297 LYYAPEVFKT---LGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVAL 373 (491)
T ss_dssp HHHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HhcchHHHHh---cCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHH
Confidence 3444555553 5666677777778888999999999999999999999999999888887776654322111111011
Q ss_pred H-HhhhhhhccccccccccceeeeeccCCCcchhHhHHHHHHHHHHHHHHHHhhhhh----------hHHHHHHHHHHHH
Q psy11547 190 F-TGRILTGLGSGMVGAPSRIYTAECSQPHLRGMLSSLASFGVSLGVLFEYSLGAFL----------SWDTVAAISTIIP 258 (587)
Q Consensus 190 ~-~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l----------~wr~~f~~~~~~~ 258 (587)
+ +.-+..+++. ...+....+.+|.+|.+.|++++++......+|.++++.+...+ ++.+.|++.++++
T Consensus 374 ~~~~~~~~~~~~-~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~ 452 (491)
T 4gc0_A 374 LSMLFYVAAFAM-SWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMG 452 (491)
T ss_dssp HHHHHHHHHHHT-TTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-HHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 1 1222223322 33466778899999999999999999999888888887665444 3456778888888
Q ss_pred HHHHHHhc-ccCCCc
Q psy11547 259 VLSIIAGC-LMPESP 272 (587)
Q Consensus 259 ~~~~~~~~-~~~esp 272 (587)
++..+..+ ++|||.
T Consensus 453 ~~~~i~~~~~~PETk 467 (491)
T 4gc0_A 453 VLAALFMWKFVPETK 467 (491)
T ss_dssp HHHHHHHHHHCCCCT
T ss_pred HHHHHHHHheecCCC
Confidence 77776665 499984
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 587 | ||||
| d1pw4a_ | 447 | f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es | 1e-15 | |
| d1pv7a_ | 417 | f.38.1.2 (A:) Lactose permease {Escherichia coli [ | 3e-08 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Score = 77.0 bits (188), Expect = 1e-15
Identities = 50/418 (11%), Positives = 107/418 (25%), Gaps = 33/418 (7%)
Query: 125 ITSDESTWIASLSAIGTMVGCVLGGYMMDLVGRKMTLIITEVPTILGWALIALAPSLPSS 184
+ + + S +I + G + D ++ L + + P SS
Sbjct: 56 FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSS 115
Query: 185 ILPWIFTGRILTGLGSGMVGAPSRIYTAECSQPHLRGMLSSLASFGVSLGVLFEYSLGAF 244
I +F L G GM P RG + S+ + ++G L
Sbjct: 116 I-AVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLL 174
Query: 245 LSWDTVAAISTIIPVLSIIAGCLMPESPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQG 304
+A + ++ + + +R
Sbjct: 175 -----------------GMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIE 217
Query: 305 LYEFSKRQETQKSRNFKETLAAIVEPACLKPFVILMLYFLIYQFSGVNPVTFYAVNIFKD 364
Y+ + + + T I L ++ + + +
Sbjct: 218 EYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLK 277
Query: 365 AGAHVNNN---LAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIF 421
H + A + + T+ M K+ R + + +Y
Sbjct: 278 EVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYW- 336
Query: 422 ATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTC 481
+ ++ M G +++ + E+ P K G G T
Sbjct: 337 ----------MNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGL 386
Query: 482 ACHFF-IFLTVKSYNMFQTHLTKEGTFLMYGCISLLGTIFFYVYLPETKNKTLQEIEE 538
+ +G F++ S+L I V + K + Q ++E
Sbjct: 387 FGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEKRRHEQLLQE 444
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Score = 53.6 bits (127), Expect = 3e-08
Identities = 39/415 (9%), Positives = 106/415 (25%), Gaps = 52/415 (12%)
Query: 125 ITSDESTWIASLSAIGTMVGCVLGGYMMDLVGRKMTLIITEVPTILGWALIALAPSLPSS 184
I+ ++ I + ++ +++ L G + D +G + L+ ++ +A + P
Sbjct: 40 ISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLL 99
Query: 185 ILPWIFTGRILTGLGSGMVGAPSRIYTAECSQPHLRG-----MLSSLASFGVSLGVLFEY 239
+ + A + A + R G +LG
Sbjct: 100 QYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVG 159
Query: 240 SLGAFLSWDTVAAISTIIPVLSIIAGCLMPESPSWLLSQGRKDACRNSLRRLRANNYDVE 299
+ + S +L+++ ++PS A ++ A
Sbjct: 160 IMFTINNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHSAFSLKLALEL--- 216
Query: 300 KEVQGLYEFSKRQETQKSRNFKETLAAIVEPACLKPFVILMLYFLIYQFSGVNPVTFYAV 359
+P + ++ Y F+
Sbjct: 217 ---------------------------FRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTS 249
Query: 360 NIFKDAGAHVNNNLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLY 419
+ ++ + +++ ++G ++ ++ V +
Sbjct: 250 FFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRI------ 303
Query: 420 IFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRG-IVGGL 478
+ + + + L F LV + I + + I
Sbjct: 304 -------IGSSFATSALEVVILKTLHMFEVP---FLLVGCFKYITSQFEVRFSATIYLVC 353
Query: 479 TTCACHFFIFLTVKSYNMFQTHLTKEGTFLMYGCISLLGTIFFYVYLPETKNKTL 533
+ + +G +L+ G ++L T+ L +L
Sbjct: 354 FCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPLSL 408
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 587 | |||
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 100.0 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.95 | |
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.33 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.32 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=6.6e-38 Score=318.63 Aligned_cols=398 Identities=13% Similarity=0.061 Sum_probs=278.9
Q ss_pred HHHHHHHHHHHhhhhhhccccccHHHHHhhhcCCCCCccCcchhHHHHHHHHHHHHHHHHhHHHhhhccchhHHHHHhhH
Q psy11547 87 LSLTLAVFANLGNVNTGMVFGFSAAATSQLISRDSPYRITSDESTWIASLSAIGTMVGCVLGGYMMDLVGRKMTLIITEV 166 (587)
Q Consensus 87 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~i~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~ 166 (587)
++|.++..++++.+...++...++.+.|.+.+ +|+|.+|.|++.+++.+++.++++++|+++||+|||+++.++.+
T Consensus 22 ~~w~i~~~~~~~~~~~~~~~~~~~~~~p~~~~----~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~ 97 (447)
T d1pw4a_ 22 LRWQIFLGIFFGYAAYYLVRKNFALAMPYLVE----QGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLI 97 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTS----STTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHH
Confidence 36777788888888888888888888887754 89999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhc----CCCCCCcchhhHHhhhhhhccccccccccceeeeeccCCCcchhHhHHHHHHHHHHHHHHHHhh
Q psy11547 167 PTILGWALIALA----PSLPSSILPWIFTGRILTGLGSGMVGAPSRIYTAECSQPHLRGMLSSLASFGVSLGVLFEYSLG 242 (587)
Q Consensus 167 ~~~i~~~~~~~~----~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~ 242 (587)
+.+++.++++++ .+++ .++++|++.|++.|...+...+++.|++|+++|++++++.+.+..+|.++++.++
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~ 172 (447)
T d1pw4a_ 98 LAAAVMLFMGFVPWATSSIA-----VMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLF 172 (447)
T ss_dssp HHHHHHHHHHHCHHHHSSSS-----HHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHH
T ss_pred HHHHHHhhccccchhhhhHH-----HHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhh
Confidence 999999999876 4777 9999999999999999999999999999999999999999999999999999887
Q ss_pred hhh-----hHHHHHHHHHHHHHHHHHHhcc-cCCCchHHHhcCCHHHHHHHHHHHhCCCcchHHHHhhHHHHHHHHHHHh
Q psy11547 243 AFL-----SWDTVAAISTIIPVLSIIAGCL-MPESPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQGLYEFSKRQETQK 316 (587)
Q Consensus 243 ~~l-----~wr~~f~~~~~~~~~~~~~~~~-~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (587)
..+ +||+.|++.+++.++..++.++ ++|+|+........+... +... +..+..+++.
T Consensus 173 ~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~------~~~~~~~~~~ 235 (447)
T d1pw4a_ 173 LLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKN-----------DYPD------DYNEKAEQEL 235 (447)
T ss_dssp HHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCC-----------C-------------------
T ss_pred hhHhhhhhcccccchhhhhhHHHHHHHHHHhcccchhhcccchhhhhhh-----------hccc------chhhcccccc
Confidence 765 8999999988888776666555 666664321111110000 0000 0000000001
Q ss_pred hhhhhHhHHhhhcCCchHHHHHHHHHHHHHHhccchhhHhcHHHHHHh-cCCC-cchHHHHHHHHHHHHHHHHhHHHhhc
Q psy11547 317 SRNFKETLAAIVEPACLKPFVILMLYFLIYQFSGVNPVTFYAVNIFKD-AGAH-VNNNLAAVIMGIVRLIFTIASCIMMK 394 (587)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~-~~~~~~~~~~~~~~~i~~~~~g~l~d 394 (587)
..........++++. ++......+...........+.+.++.+ .+.+ ...+....+..+..+++.++.+++.|
T Consensus 236 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 310 (447)
T d1pw4a_ 236 TAKQIFMQYVLPNKL-----LWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSD 310 (447)
T ss_dssp CCTHHHHHHTSSCHH-----HHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHcCch-----HHHHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhh
Confidence 111112222233322 2222222222222344456666666655 5666 45667778888899999999999999
Q ss_pred ccCCchhhHhhhHHHHHHHHHHHHHHHhccCCCCCCCcCccchhHHHHHHHHHHHHHhccccccceeeeeccCCCCchhh
Q psy11547 395 KMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGI 474 (587)
Q Consensus 395 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~ 474 (587)
|++|++..........+..+........ .....+...+..++.+ ....+..+....+..|.+|++.|++
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~p~~~~g~ 379 (447)
T d1pw4a_ 311 KVFRGNRGATGVFFMTLVTIATIVYWMN----------PAGNPTVDMICMIVIG-FLIYGPVMLIGLHALELAPKKAAGT 379 (447)
T ss_dssp HTSTTCHHHHHHHHHHHHHHHHHHTTSC----------CTTCHHHHHHHHHHHH-HHHTHHHHHHHHHHHHTSCTTHHHH
T ss_pred hccccccccccchhHHHHHHHHHHHHhc----------ccccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHcCHHHHHH
Confidence 9998765554444433333333221111 0122333333333333 3333334455578899999999999
Q ss_pred HHHHHHHHHHHH-HHHHHHhhHHHHHhhhhhhHHHHHHHHHHHHHHHhheecc
Q psy11547 475 VGGLTTCACHFF-IFLTVKSYNMFQTHLTKEGTFLMYGCISLLGTIFFYVYLP 526 (587)
Q Consensus 475 ~~g~~~~~~~~g-~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 526 (587)
+.|+.+...+++ ..++|.+.|.+.|..|+...|++.+++++++.++.+++.+
T Consensus 380 ~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 432 (447)
T d1pw4a_ 380 AAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMI 432 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999988875 5668899999999999998888888777777766555433
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.95 E-value=1.6e-28 Score=245.53 Aligned_cols=379 Identities=11% Similarity=0.050 Sum_probs=244.4
Q ss_pred hccccccHHHHHhhhcCCCCCccCcchhHHHHHHHHHHHHHHHHhHHHhhhccchhHHHHHhhHHHHHHHHHHHhcCCCC
Q psy11547 103 GMVFGFSAAATSQLISRDSPYRITSDESTWIASLSAIGTMVGCVLGGYMMDLVGRKMTLIITEVPTILGWALIALAPSLP 182 (587)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~i~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~ 182 (587)
.+..+...+.+|.+..+ ++|+|.+++|++.+++.+++.++++++|+++||+|||++++++.++..++.++..+..+..
T Consensus 20 ~~~~~~~~~~l~~~l~~--~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~~~~~ 97 (417)
T d1pv7a_ 20 FFIMGAYFPFFPIWLHD--INHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGP 97 (417)
T ss_dssp HHHHHHHHHHHHHHHHH--HHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHHTHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHH--ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 44445556777764332 3899999999999999999999999999999999999999999999999998888876644
Q ss_pred CCcchhhHHhhhhhhccccccccccceeeeeccCC--CcchhHhHHHHHHHHHHHHHHHHhhhhh---hHHHHHHHHHHH
Q psy11547 183 SSILPWIFTGRILTGLGSGMVGAPSRIYTAECSQP--HLRGMLSSLASFGVSLGVLFEYSLGAFL---SWDTVAAISTII 257 (587)
Q Consensus 183 ~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~--~~r~~~~~~~~~~~~~G~~i~~~l~~~l---~wr~~f~~~~~~ 257 (587)
. .....++.+++.+.+.+...........+..++ +++.+..+........|..+++.+++.+ +|+..+......
T Consensus 98 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 176 (417)
T d1pv7a_ 98 L-LQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGC 176 (417)
T ss_dssp H-HHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred h-HHHHHHHHHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhccccccccccccccccccccccccchhhH
Confidence 0 001344556666665555555544444443332 2345667777888888889999888887 666666665555
Q ss_pred HHHHH-HHhcccCCCchHHHhcCCHHHHHHHHHHHhCCCcchHHHHhhHHHHHHHHHHHhhhhhhHhHHhhhcCCchHHH
Q psy11547 258 PVLSI-IAGCLMPESPSWLLSQGRKDACRNSLRRLRANNYDVEKEVQGLYEFSKRQETQKSRNFKETLAAIVEPACLKPF 336 (587)
Q Consensus 258 ~~~~~-~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (587)
..+.. +..+..+|++.... +.++. .+.++........+..+.+..+...
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~---~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (417)
T d1pv7a_ 177 ALILAVLLFFAKTDAPSSAT---VANAV---------------------------GANHSAFSLKLALELFRQPKLWFLS 226 (417)
T ss_dssp HHHHHHHHHSSCCCSCSSSC---SSHHH---------------------------HSCCCCCCHHHHHHHTTSSHHHHHH
T ss_pred HHHHHHHHHHHhcccccchh---hhhhh---------------------------hhhcccccccccccccccccccchh
Confidence 55444 44444776653211 10000 0000111112222222222222222
Q ss_pred HHHHHHHHHHHhccchhhHhcHHHHHHhcCCC-----cchHHHHHHHHHHHHHHHHhHHHhhcccCCchhhHhhhHHHHH
Q psy11547 337 VILMLYFLIYQFSGVNPVTFYAVNIFKDAGAH-----VNNNLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGV 411 (587)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-----~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~~~~~~~~~~~~~~ 411 (587)
......... ..........+....... ...........++..++..+.+++.||.++|+.+.++.++.++
T Consensus 227 ~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~ 301 (417)
T d1pv7a_ 227 LYVIGVSCT-----YDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSV 301 (417)
T ss_dssp HHHHHHHHH-----HHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred hhhHHHHHH-----HHhhhccccccccccccccccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHH
Confidence 222221111 111112222222221111 1223445566777888899999999999999999988888887
Q ss_pred HHHHHHHHHHhccCCCCCCCcCccchhHHHHHHHHHHHHHhccccccceeeeeccCCCCchhhHHHHHH-HHHHHHHHHH
Q psy11547 412 SMTGLGLYIFATKDFWPEYKFPAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTT-CACHFFIFLT 490 (587)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~-~~~~~g~~i~ 490 (587)
+.+.+.. ..+.+.......+.+.+.+.. .+...+++.|.+|++.|+++.|+.. ....+|..++
T Consensus 302 ~~~~~~~---------------~~~~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~ 365 (417)
T d1pv7a_ 302 RIIGSSF---------------ATSALEVVILKTLHMFEVPFL-LVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFM 365 (417)
T ss_dssp HHHHHHT---------------CCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHH
T ss_pred hhhcccc---------------ccccchhhHHHHHHHHHHHHH-HHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHH
Confidence 7776665 234444444444444444443 3455688999999999999999864 5567999999
Q ss_pred HHhhHHHHHhhhhhhHHHHHHHHHHHHHHHhheecccCCCCCHHH
Q psy11547 491 VKSYNMFQTHLTKEGTFLMYGCISLLGTIFFYVYLPETKNKTLQE 535 (587)
Q Consensus 491 ~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (587)
|.+.|.+.|..|+...|++.++++++..++..+.+++++....++
T Consensus 366 ~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~r 410 (417)
T d1pv7a_ 366 SVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPLSLLR 410 (417)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCCSSCTTHHH
T ss_pred HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhH
Confidence 999999999999999999999888888887777777666655543
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.33 E-value=1e-12 Score=131.26 Aligned_cols=163 Identities=12% Similarity=0.041 Sum_probs=121.7
Q ss_pred hHhcHHHHHHhcCCC-cchHHHHHHHHHHHHHHHHhHHHhhcccCCchhhHhhhHHHHHHHHHHHHHHHhccCCCCCCCc
Q psy11547 354 VTFYAVNIFKDAGAH-VNNNLAAVIMGIVRLIFTIASCIMMKKMGRRSLTFISSIGCGVSMTGLGLYIFATKDFWPEYKF 432 (587)
Q Consensus 354 ~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (587)
+....|. .++.|.+ .+.++..+...++..++.++.|+++||+|||+++.++.++.+++.++.+.....
T Consensus 44 ~~~~~p~-~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~---------- 112 (447)
T d1pw4a_ 44 FALAMPY-LVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWA---------- 112 (447)
T ss_dssp HHHHHHH-TTSSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHH----------
T ss_pred HHHHHHH-HHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhccccchh----------
Confidence 3334454 4567887 677888999999999999999999999999999999999888888877664333
Q ss_pred CccchhHHHHHHHHHHHHHhccccccceeeeeccCCCCchhhHHHHHHHHHHHHHHHHHHhhHHHHHhh-hhhhHHHHHH
Q psy11547 433 PAFVSYLPVLMLMTFTAASTIGYLVVPWVMIGEVYPTKVRGIVGGLTTCACHFFIFLTVKSYNMFQTHL-TKEGTFLMYG 511 (587)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~~-g~~~~~~~~~ 511 (587)
....+..++..++.+.+.+.. .+....++.|.+|++.|+.+.|+.+....+|..+++.+.+.+.+.. +|+..+++.+
T Consensus 113 -~~~~~~~~~~~~~~g~~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~ 190 (447)
T d1pw4a_ 113 -TSSIAVMFVLLFLCGWFQGMG-WPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPA 190 (447)
T ss_dssp -HSSSSHHHHHHHHHHHHHHHT-HHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHH
T ss_pred -hhhHHHHHHHHHHHHHhhhhh-hhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhhhcccccchhhh
Confidence 112233333334444443333 3444588999999999999999999999999999999888777654 6788888888
Q ss_pred HHHHHHHHHhheecccCC
Q psy11547 512 CISLLGTIFFYVYLPETK 529 (587)
Q Consensus 512 ~~~~~~~~~~~~~~~~~~ 529 (587)
.+.++..++.+++.++.+
T Consensus 191 ~~~~~~~~~~~~~~~~~~ 208 (447)
T d1pw4a_ 191 FCAILVALFAFAMMRDTP 208 (447)
T ss_dssp HHHHHHHHHHHHHCCCSS
T ss_pred hhHHHHHHHHHHhcccch
Confidence 877777776666655543
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.32 E-value=5.6e-13 Score=131.28 Aligned_cols=143 Identities=8% Similarity=0.065 Sum_probs=127.6
Q ss_pred CccCcchhHHHHHHHHHHHHHHHHhHHHhhhccchhHHHHHhhHHHHHHHHHHHhcCCCCCCcchhhHHhhhhhhccccc
Q psy11547 123 YRITSDESTWIASLSAIGTMVGCVLGGYMMDLVGRKMTLIITEVPTILGWALIALAPSLPSSILPWIFTGRILTGLGSGM 202 (587)
Q Consensus 123 ~~~s~~~~g~i~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~ 202 (587)
.+.+....+...+...++..++..+.+++.||+|+|+++.++.++.+++.++..+.++.+ .+++..++.|++.+.
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~g~~~~~ 328 (417)
T d1pv7a_ 254 GEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSAL-----EVVILKTLHMFEVPF 328 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHH-----HHHHHHHHHHHHHHH
T ss_pred cccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccc-----hhhHHHHHHHHHHHH
Confidence 556677788889999999999999999999999999999999999999999999999998 899999999999999
Q ss_pred cccccceeeeeccCCCcchhHhHHH-HHHHHHHHHHHHHhhhhh----hHHHHHHHHHHHHHHHHHHhcc-cCC
Q psy11547 203 VGAPSRIYTAECSQPHLRGMLSSLA-SFGVSLGVLFEYSLGAFL----SWDTVAAISTIIPVLSIIAGCL-MPE 270 (587)
Q Consensus 203 ~~~~~~~~i~e~~~~~~r~~~~~~~-~~~~~~G~~i~~~l~~~l----~wr~~f~~~~~~~~~~~~~~~~-~~e 270 (587)
..+...+++.|.+|+++|+++.++. +....+|.+++|.+++++ ||+..|++.+++.++..++..+ +++
T Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~ 402 (417)
T d1pv7a_ 329 LLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSG 402 (417)
T ss_dssp HHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 9999999999999999999999975 566789999999998887 8999999988888777666555 443
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