Psyllid ID: psy11553

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140------
Protein Sequence
MSSYELVYHTVGRHRFQQITANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYCKEYRNINALFAVLMGLSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVSKLQSPVIPFMPLLLKGKTWSRV
Secondary Structure (PSIPRED)
ccHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHcccccHHHHHHHHHccccHHHHHHHHHHHHHHccccHHHHHHHHHHcccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHccHHHHHHHHHHHHccHHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccccccEEEccEEEEEc
Coil and Loop (DISEMBL)
MSSYELVYHTVGRHRFQQITANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYCKEYRNINALFAVLMGLSNVAVSRLSLtwdklpskskkTYTELEALIDPSKNHRAYRQAVSklqspvipfmplllkgktwsrv
Flexible Loop (DISEMBL)
MSSYELVYhtvgrhrfqqITANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYCKEYRNINALFAVLMGLSNVAVSRLSltwdklpskskKTYTELEALIDPSKNHRAYRQAVsklqspvipfmplllkgktwsrv
Low Complexity Region (SEG)
MSSYELVYHTVGRHRFQQITANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYCKEYRNINALFAVLMGLSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVSKLQSPVIPFMPLLLKGKTWSRV
Disordered region (IsUnstruct)
***YELVYHTVGRHRFQQITANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYCKEYRNINALFAVLMGLSNVAVSRLSLTWDKL*******YTELEALI********Y**AVSKLQSPVIPFMPLLLKG******
Disordered Region (DISOPRED)
MSSYELVYHTVGRHRFQQITANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYCKEYRNINALFAVLMGLSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVSKLQSPVIPFMPLLLKGKTWSRV
Disordered Region (DISEMBL)
MSSYELVYHTVGRHRFQQITANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYCKEYRNINALFAVLMGLSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVSKLQSPVIPFMPLLLKGKTWSRV
Disordered Region (DISPRO)
MSSYELVYHTVGRHRFQQITANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYCKEYRNINALFAVLMGLSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVSKLQSPVIPFMPLLLKGKTWSRV
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSSYELVYHTVGRHRFQQITANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYCKEYRNINALFAVLMGLSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVSKLQSPVIPFMPLLLKGKTWSRV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	146	2.2.26 [Sep-21-2011]
Q8WZA2	1011	Rap guanine nucleotide ex	no	N/A	0.958	0.138	0.678	2e-56
Q9EQZ6	1011	Rap guanine nucleotide ex	no	N/A	0.958	0.138	0.664	7e-56
Q9Z1C7	436	Rap guanine nucleotide ex	no	N/A	0.958	0.321	0.65	1e-54
Q92565	580	Rap guanine nucleotide ex	no	N/A	0.952	0.239	0.561	1e-41
Q8C0Q9	814	Rap guanine nucleotide ex	no	N/A	0.952	0.170	0.546	8e-41
P83900	580	Rap guanine nucleotide ex	no	N/A	0.952	0.239	0.546	1e-40
O95398	923	Rap guanine nucleotide ex	no	N/A	0.952	0.150	0.557	1e-40
Q9Z1C8	926	Rap guanine nucleotide ex	no	N/A	0.952	0.150	0.557	3e-40
Q8VCC8	918	Rap guanine nucleotide ex	no	N/A	0.924	0.147	0.577	4e-40
P34578	1038	Rap guanine nucleotide ex	yes	N/A	0.938	0.131	0.525	3e-37

>sp|Q8WZA2|RPGF4_HUMAN Rap guanine nucleotide exchange factor 4 OS=Homo sapiens GN=RAPGEF4 PE=1 SV=1

 Score =  217 bits (553), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 95/140 (67%), Positives = 123/140 (87%)

Query: 5   ELVYHTVGRHRFQQITANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYC 64
           EL+YHT GRH F++ TANLD+FLRRFNEIQ+WV+TEI L + L+KRVQ+L+K IK+AA+C
Sbjct: 795 ELIYHTFGRHNFKKTTANLDLFLRRFNEIQFWVVTEICLCSQLSKRVQLLKKFIKIAAHC 854

Query: 65  KEYRNINALFAVLMGLSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVS 124
           KEY+N+N+ FA++MGLSNVAVSRL+LTW+KLPSK KK Y E E+L+DPS+NHRAYR  V+
Sbjct: 855 KEYKNLNSFFAIVMGLSNVAVSRLALTWEKLPSKFKKFYAEFESLMDPSRNHRAYRLTVA 914

Query: 125 KLQSPVIPFMPLLLKGKTWS 144
           KL+ P+IPFMPLL+K  T++
Sbjct: 915 KLEPPLIPFMPLLIKDMTFT 934

Guanine nucleotide exchange factor (GEF) for RAP1A, RAP1B and RAP2A small GTPases that is activated by binding cAMP. Seems not to activate RAB3A. Involved in cAMP-dependent, PKA-independent exocytosis through interaction with RIMS2.
Homo sapiens (taxid: 9606)

>sp|Q9EQZ6|RPGF4_MOUSE Rap guanine nucleotide exchange factor 4 OS=Mus musculus GN=Rapgef4 PE=1 SV=1

 Score =  215 bits (548), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 93/140 (66%), Positives = 122/140 (87%)

Query: 5   ELVYHTVGRHRFQQITANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYC 64
           EL+YHT GRH F++ TANLD+FLRRFNEIQ+WV+TE+ L + L+KRVQ+L+K IK+AA+C
Sbjct: 795 ELIYHTFGRHNFKKTTANLDLFLRRFNEIQFWVVTEVCLCSQLSKRVQLLKKFIKIAAHC 854

Query: 65  KEYRNINALFAVLMGLSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVS 124
           KEY+N+N+ FA++MGLSNVAVSRL+LTW+KLPSK KK Y E E+L+DPS+NHRAYR   +
Sbjct: 855 KEYKNLNSFFAIVMGLSNVAVSRLALTWEKLPSKFKKFYAEFESLMDPSRNHRAYRLTAA 914

Query: 125 KLQSPVIPFMPLLLKGKTWS 144
           KL+ P+IPFMPLL+K  T++
Sbjct: 915 KLEPPLIPFMPLLIKDMTFT 934

Guanine nucleotide exchange factor (GEF) for RAP1A, RAP1B and RAP2A small GTPases that is activated by binding cAMP. Seems not to activate RAB3A. Involved in cAMP-dependent, PKA-independent exocytosis through interaction with RIMS2.

Mus musculus (taxid: 10090)

>sp|Q9Z1C7|RPGF4_RAT Rap guanine nucleotide exchange factor 4 (Fragment) OS=Rattus norvegicus GN=Rapgef4 PE=2 SV=1

 Score =  211 bits (538), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 91/140 (65%), Positives = 120/140 (85%)

Query: 5   ELVYHTVGRHRFQQITANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYC 64
           EL+YHT GRH F++ TANLD+FLRRFNEIQ+WV+TEI L + L+KRVQ+L+K IK+AA+C
Sbjct: 220 ELIYHTFGRHNFKKTTANLDLFLRRFNEIQFWVVTEICLCSQLSKRVQLLKKCIKIAAHC 279

Query: 65  KEYRNINALFAVLMGLSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVS 124
           KEY+N+N+ F ++MGLSNVA SRL+LTW+KLPSK KK Y E E+L+DPS+NH+AYR   +
Sbjct: 280 KEYKNLNSFFGIVMGLSNVAESRLALTWEKLPSKFKKFYAEFESLMDPSRNHKAYRLTAA 339

Query: 125 KLQSPVIPFMPLLLKGKTWS 144
           KL+ P+IPFMPLL+K  T++
Sbjct: 340 KLEPPLIPFMPLLIKDMTFT 359

Guanine nucleotide exchange factor (GEF) for RAP1A, RAP1B and RAP2A small GTPases that is activated by binding cAMP. Seems not to activate RAB3A. Involved in cAMP-dependent, PKA-independent exocytosis through interaction with RIMS2.

Rattus norvegicus (taxid: 10116)

>sp|Q92565|RPGF5_HUMAN Rap guanine nucleotide exchange factor 5 OS=Homo sapiens GN=RAPGEF5 PE=1 SV=1

 Score =  168 bits (426), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 78/139 (56%), Positives = 104/139 (74%)

Query: 5   ELVYHTVGRHRFQQITANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYC 64
           EL+Y T  R    + TANL + L+R NE+Q WV TEILL + L KRVQ+++K IK+AA+C
Sbjct: 368 ELIYFTFSRQGSGEHTANLSLLLQRCNEVQLWVATEILLCSQLGKRVQLVKKFIKIAAHC 427

Query: 65  KEYRNINALFAVLMGLSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVS 124
           K  RN+N+ FA++MGL+  +VSRLS TW+K+P K KK ++ELE+L DPS NH+AYR A  
Sbjct: 428 KAQRNLNSFFAIVMGLNTASVSRLSQTWEKIPGKFKKLFSELESLTDPSLNHKAYRDAFK 487

Query: 125 KLQSPVIPFMPLLLKGKTW 143
           K++ P IPFMPLLLK  T+
Sbjct: 488 KMKPPKIPFMPLLLKDVTF 506

Guanine nucleotide exchange factor (GEF) for RAP1A, RAP2A and MRAS/M-Ras-GTP. Its association with MRAS inhibits Rap1 activation.

Homo sapiens (taxid: 9606)

>sp|Q8C0Q9|RPGF5_MOUSE Rap guanine nucleotide exchange factor 5 OS=Mus musculus GN=Rapgef5 PE=2 SV=2

 Score =  165 bits (418), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 76/139 (54%), Positives = 103/139 (74%)

Query: 5   ELVYHTVGRHRFQQITANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYC 64
           EL+Y T  R    + T NL + L+R NE+Q WV TEILL + L KRVQ+++K IK+AA+C
Sbjct: 601 ELIYFTFSRQGNGENTVNLSLLLQRCNEVQLWVATEILLCSQLGKRVQLVKKFIKIAAHC 660

Query: 65  KEYRNINALFAVLMGLSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVS 124
           K  +N+N+ FA++MGL+  +VSRLS TW+K+P K KK ++ELE+L DPS NH+AYR A  
Sbjct: 661 KAQQNLNSFFAIVMGLNTASVSRLSQTWEKIPGKFKKLFSELESLTDPSLNHKAYRDAFK 720

Query: 125 KLQSPVIPFMPLLLKGKTW 143
           K++ P IPFMPLLLK  T+
Sbjct: 721 KMKPPKIPFMPLLLKDVTF 739

Guanine nucleotide exchange factor (GEF) for RAP1A, RAP2A and MRAS/M-Ras-GTP. Its association with MRAS inhibits Rap1 activation.

Mus musculus (taxid: 10090)

>sp|P83900|RPGF5_RAT Rap guanine nucleotide exchange factor 5 OS=Rattus norvegicus GN=Rapgef5 PE=2 SV=1

 Score =  165 bits (417), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 76/139 (54%), Positives = 103/139 (74%)

Query: 5   ELVYHTVGRHRFQQITANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYC 64
           EL+Y T  R    + T NL + L+R NE+Q WV TEILL + L KRVQ+++K IK+AA+C
Sbjct: 367 ELIYFTFSRQGSGEHTVNLSLLLQRCNEVQLWVATEILLCSQLGKRVQLVKKFIKIAAHC 426

Query: 65  KEYRNINALFAVLMGLSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVS 124
           K  +N+N+ FA++MGL+  +VSRLS TW+K+P K KK ++ELE+L DPS NH+AYR A  
Sbjct: 427 KAQQNLNSFFAIVMGLNTASVSRLSQTWEKIPGKFKKLFSELESLTDPSLNHKAYRDAFK 486

Query: 125 KLQSPVIPFMPLLLKGKTW 143
           K++ P IPFMPLLLK  T+
Sbjct: 487 KMKPPKIPFMPLLLKDVTF 505

Guanine nucleotide exchange factor (GEF) for RAP1A, RAP2A and MRAS/M-Ras-GTP. Its association with MRAS inhibits Rap1 activation.

Rattus norvegicus (taxid: 10116)

>sp|O95398|RPGF3_HUMAN Rap guanine nucleotide exchange factor 3 OS=Homo sapiens GN=RAPGEF3 PE=1 SV=6

 Score =  165 bits (417), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 78/140 (55%), Positives = 104/140 (74%), Gaps = 1/140 (0%)

Query: 5   ELVYHTVGRHRFQQIT-ANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAY 63
           EL+++ +G    + +T ANL+ F+RRFNE+QYWV TE+ L      R Q+LRK IKLAA+
Sbjct: 685 ELIHYVLGPQHLRDVTTANLERFMRRFNELQYWVATELCLCPVPGPRAQLLRKFIKLAAH 744

Query: 64  CKEYRNINALFAVLMGLSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAV 123
            KE +N+N+ FAV+ GLSN A+SRL+ TW++LP K +K Y+ LE L+DPS NHR YR A+
Sbjct: 745 LKEQKNLNSFFAVMFGLSNSAISRLAHTWERLPHKVRKLYSALERLLDPSWNHRVYRLAL 804

Query: 124 SKLQSPVIPFMPLLLKGKTW 143
           +KL  PVIPFMPLLLK  T+
Sbjct: 805 AKLSPPVIPFMPLLLKDMTF 824

Guanine nucleotide exchange factor (GEF) for RAP1A and RAP2A small GTPases that is activated by binding cAMP.

Homo sapiens (taxid: 9606)

>sp|Q9Z1C8|RPGF3_RAT Rap guanine nucleotide exchange factor 3 OS=Rattus norvegicus GN=Rapgef3 PE=2 SV=2

 Score =  163 bits (413), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 78/140 (55%), Positives = 104/140 (74%), Gaps = 1/140 (0%)

Query: 5   ELVYHTVGRHRFQQIT-ANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAY 63
           EL+++ +G    + +T ANL+ F+RRFNE+QYWV TE+ L      R Q+LRK IKLAA+
Sbjct: 688 ELIHYVLGPQHLRDVTTANLERFMRRFNELQYWVATELCLCPVPGPRAQLLRKFIKLAAH 747

Query: 64  CKEYRNINALFAVLMGLSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAV 123
            KE +N+N+ FAV+ GLSN A+SRL+ TW++LP K +K Y+ LE L+DPS NHR YR A+
Sbjct: 748 LKEQKNLNSFFAVMFGLSNSAISRLAHTWERLPHKVRKLYSALERLLDPSWNHRVYRLAL 807

Query: 124 SKLQSPVIPFMPLLLKGKTW 143
           +KL  PVIPFMPLLLK  T+
Sbjct: 808 TKLSPPVIPFMPLLLKDMTF 827

Guanine nucleotide exchange factor (GEF) for RAP1A and RAP2A small GTPases that is activated by binding cAMP.

Rattus norvegicus (taxid: 10116)

>sp|Q8VCC8|RPGF3_MOUSE Rap guanine nucleotide exchange factor 3 OS=Mus musculus GN=Rapgef3 PE=2 SV=2

 Score =  163 bits (412), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 78/135 (57%), Positives = 98/135 (72%)

Query: 9   HTVGRHRFQQITANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYCKEYR 68
           H V  H     TANL+ F+RRFNE+QYWV TE+ L      R Q+LRK IKLAA+ KE +
Sbjct: 685 HQVQEHLRDVTTANLERFMRRFNELQYWVATELCLCPVPGSRAQLLRKFIKLAAHLKEQK 744

Query: 69  NINALFAVLMGLSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVSKLQS 128
           N+N+ FAV+ GLSN A+SRL+ TW++LP K +K Y+ LE L+DPS NHR YR A++KL  
Sbjct: 745 NLNSFFAVMFGLSNSAISRLAHTWERLPHKVRKLYSALERLLDPSWNHRVYRLALTKLSP 804

Query: 129 PVIPFMPLLLKGKTW 143
           PVIPFMPLLLK  T+
Sbjct: 805 PVIPFMPLLLKDVTF 819

Guanine nucleotide exchange factor (GEF) for RAP1A and RAP2A small GTPases that is activated by binding cAMP.

Mus musculus (taxid: 10090)

>sp|P34578|RPGF1_CAEEL Rap guanine nucleotide exchange factor 1 OS=Caenorhabditis elegans GN=epac-1 PE=4 SV=3

 Score =  153 bits (387), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 73/139 (52%), Positives = 102/139 (73%), Gaps = 2/139 (1%)

Query: 2   SSYELVYHTVGRHRFQ-QITANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKL 60
            S EL+Y  +GR  F   +  NLD+ +RRFNE+Q+W  TEILL T  N R++IL+K I +
Sbjct: 815 DSNELLYQVIGRESFPLSMPFNLDLLVRRFNEVQHWSTTEILLATEEN-RMEILKKFISI 873

Query: 61  AAYCKEYRNINALFAVLMGLSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYR 120
           A   +EYR++  +FA+ +GLS+ ++SRL+LTW KLP  S KT++ELE L+DP++NHR YR
Sbjct: 874 ATIAREYRDLLTVFAITLGLSHTSISRLTLTWSKLPPASLKTFSELENLLDPTRNHRMYR 933

Query: 121 QAVSKLQSPVIPFMPLLLK 139
             VSK+ SP IPF+PL+LK
Sbjct: 934 LLVSKMSSPYIPFVPLILK 952

Caenorhabditis elegans (taxid: 6239)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	146
270013336	883	hypothetical protein TcasGA2_TC011926 [T	0.965	0.159	0.751	5e-59
189241119	1019	PREDICTED: similar to AGAP007307-PA [Tri	0.972	0.139	0.746	6e-59
158285893	998	AGAP007307-PA [Anopheles gambiae str. PE	0.972	0.142	0.704	6e-57
328717287	1004	PREDICTED: rap guanine nucleotide exchan	0.931	0.135	0.757	3e-56
157125916	1047	camp-dependent rap1 guanine-nucleotide e	0.965	0.134	0.702	3e-56
291391747	993	PREDICTED: Rap guanine nucleotide exchan	0.958	0.140	0.692	2e-55
291391745	1011	PREDICTED: Rap guanine nucleotide exchan	0.958	0.138	0.692	2e-55
170065617	896	c-AMP-dependent rap1 guanine-nucleotide	0.965	0.157	0.687	2e-55
158935664	581	cAMP-dependent exchange protein EPAC [Ca	0.972	0.244	0.697	2e-55
449270176	920	Rap guanine nucleotide exchange factor 4	0.958	0.152	0.685	3e-55

>gi|270013336|gb|EFA09784.1| hypothetical protein TcasGA2_TC011926 [Tribolium castaneum]

 Score =  231 bits (590), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 106/141 (75%), Positives = 124/141 (87%)

Query: 4   YELVYHTVGRHRFQQITANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAY 63
           YEL+YHT GRH F QITANLDVFLRRFNEIQ+WV+TEI + TSL+KRV +LRK IKLAAY
Sbjct: 667 YELLYHTFGRHHFGQITANLDVFLRRFNEIQFWVVTEICMTTSLSKRVALLRKFIKLAAY 726

Query: 64  CKEYRNINALFAVLMGLSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAV 123
           CKEY+N+NA  A++MGLSNVAVSRLSLTW+KLPSK +K YTE E+LIDPS+NHRAYR +V
Sbjct: 727 CKEYQNLNAFCAIVMGLSNVAVSRLSLTWEKLPSKFRKLYTEFESLIDPSRNHRAYRVSV 786

Query: 124 SKLQSPVIPFMPLLLKGKTWS 144
            KLQ PV+PFMPLLLK  T++
Sbjct: 787 GKLQPPVVPFMPLLLKDMTFT 807

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189241119|ref|XP_972857.2| PREDICTED: similar to AGAP007307-PA [Tribolium castaneum]

 Score =  231 bits (590), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 106/142 (74%), Positives = 124/142 (87%)

Query: 3   SYELVYHTVGRHRFQQITANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAA 62
            YEL+YHT GRH F QITANLDVFLRRFNEIQ+WV+TEI + TSL+KRV +LRK IKLAA
Sbjct: 802 EYELLYHTFGRHHFGQITANLDVFLRRFNEIQFWVVTEICMTTSLSKRVALLRKFIKLAA 861

Query: 63  YCKEYRNINALFAVLMGLSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQA 122
           YCKEY+N+NA  A++MGLSNVAVSRLSLTW+KLPSK +K YTE E+LIDPS+NHRAYR +
Sbjct: 862 YCKEYQNLNAFCAIVMGLSNVAVSRLSLTWEKLPSKFRKLYTEFESLIDPSRNHRAYRVS 921

Query: 123 VSKLQSPVIPFMPLLLKGKTWS 144
           V KLQ PV+PFMPLLLK  T++
Sbjct: 922 VGKLQPPVVPFMPLLLKDMTFT 943

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158285893|ref|XP_308514.4| AGAP007307-PA [Anopheles gambiae str. PEST] gi|157020208|gb|EAA45423.4| AGAP007307-PA [Anopheles gambiae str. PEST]

 Score =  224 bits (572), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 100/142 (70%), Positives = 123/142 (86%)

Query: 3   SYELVYHTVGRHRFQQITANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAA 62
            YEL+YHT GRH F +IT+NLDVF+RRFNEIQYWV+TEI+  T+L KR+ +++K IKLAA
Sbjct: 781 EYELLYHTFGRHHFNKITSNLDVFIRRFNEIQYWVVTEIVSTTNLTKRMSLVKKFIKLAA 840

Query: 63  YCKEYRNINALFAVLMGLSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQA 122
           +CKEY+N+NA FA++MGLSN AVSRLS+TWDKLPSK +K +TE EALIDPS+NHRAYR +
Sbjct: 841 FCKEYQNLNAFFAIVMGLSNTAVSRLSMTWDKLPSKFRKLFTEYEALIDPSRNHRAYRMS 900

Query: 123 VSKLQSPVIPFMPLLLKGKTWS 144
           V KLQ PVIPFMPLLLK  T++
Sbjct: 901 VGKLQPPVIPFMPLLLKDMTFA 922

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328717287|ref|XP_001947549.2| PREDICTED: rap guanine nucleotide exchange factor 4-like, partial [Acyrthosiphon pisum]

 Score =  223 bits (567), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 103/136 (75%), Positives = 116/136 (85%)

Query: 4   YELVYHTVGRHRFQQITANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAY 63
           YEL+Y T GRHRFQQITANLD+FLRRFNEIQYWVITEI    +++KR  IL+KMIKLA Y
Sbjct: 788 YELIYLTFGRHRFQQITANLDIFLRRFNEIQYWVITEICTSQNISKRTNILKKMIKLATY 847

Query: 64  CKEYRNINALFAVLMGLSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAV 123
           CKEY N NA FA+LMGLS+VAVSRLS TWDKLPSKS+K +TE E LIDPS+NHRAYR  V
Sbjct: 848 CKEYYNFNAFFAILMGLSDVAVSRLSTTWDKLPSKSRKQFTEYETLIDPSRNHRAYRITV 907

Query: 124 SKLQSPVIPFMPLLLK 139
            KL SP+IPFMPLL+K
Sbjct: 908 GKLPSPMIPFMPLLIK 923

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157125916|ref|XP_001660814.1| camp-dependent rap1 guanine-nucleotide exchange factor [Aedes aegypti] gi|108873480|gb|EAT37705.1| AAEL010328-PA [Aedes aegypti]

 Score =  222 bits (566), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 99/141 (70%), Positives = 123/141 (87%)

Query: 4   YELVYHTVGRHRFQQITANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAY 63
           YEL+YHT GRH F +IT+NLDVF+RRFNEIQYWV+TEI+  ++L KR+ +++K IKLAA+
Sbjct: 831 YELLYHTFGRHHFNKITSNLDVFIRRFNEIQYWVVTEIVSTSNLTKRMSLVKKFIKLAAF 890

Query: 64  CKEYRNINALFAVLMGLSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAV 123
           CKEY+N+NA FA++MGLSN+AVSRLS TWDKLPSK +K +TE EALIDPS+NHRAYR +V
Sbjct: 891 CKEYQNLNAFFAIVMGLSNMAVSRLSQTWDKLPSKFRKLFTEYEALIDPSRNHRAYRMSV 950

Query: 124 SKLQSPVIPFMPLLLKGKTWS 144
            KLQ PVIPFMPLLLK  T++
Sbjct: 951 GKLQPPVIPFMPLLLKDMTFA 971

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|291391747|ref|XP_002712337.1| PREDICTED: Rap guanine nucleotide exchange factor (GEF) 4 isoform 2 [Oryctolagus cuniculus]

 Score =  220 bits (560), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 97/140 (69%), Positives = 124/140 (88%)

Query: 5   ELVYHTVGRHRFQQITANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYC 64
           EL+YHT GRH F++ TANLD+FLRRFNEIQ+WVITEI L + L+KRVQ+L+K IK+AA+C
Sbjct: 777 ELIYHTFGRHNFKKTTANLDLFLRRFNEIQFWVITEICLCSQLSKRVQLLKKFIKIAAHC 836

Query: 65  KEYRNINALFAVLMGLSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVS 124
           KEYRN+N+ FA++MGLSNVAVSRL+LTW+KLPSK KK Y E E+L+DPS+NHRAYR  V+
Sbjct: 837 KEYRNLNSFFAIVMGLSNVAVSRLALTWEKLPSKFKKFYAEFESLMDPSRNHRAYRLTVA 896

Query: 125 KLQSPVIPFMPLLLKGKTWS 144
           KL++P+IPFMPLL+K  T++
Sbjct: 897 KLEAPLIPFMPLLIKDMTFT 916

Source: Oryctolagus cuniculus

Species: Oryctolagus cuniculus

Genus: Oryctolagus

Family: Leporidae

Order: Lagomorpha

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|291391745|ref|XP_002712336.1| PREDICTED: Rap guanine nucleotide exchange factor (GEF) 4 isoform 1 [Oryctolagus cuniculus]

 Score =  220 bits (560), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 97/140 (69%), Positives = 124/140 (88%)

Query: 5   ELVYHTVGRHRFQQITANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYC 64
           EL+YHT GRH F++ TANLD+FLRRFNEIQ+WVITEI L + L+KRVQ+L+K IK+AA+C
Sbjct: 795 ELIYHTFGRHNFKKTTANLDLFLRRFNEIQFWVITEICLCSQLSKRVQLLKKFIKIAAHC 854

Query: 65  KEYRNINALFAVLMGLSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVS 124
           KEYRN+N+ FA++MGLSNVAVSRL+LTW+KLPSK KK Y E E+L+DPS+NHRAYR  V+
Sbjct: 855 KEYRNLNSFFAIVMGLSNVAVSRLALTWEKLPSKFKKFYAEFESLMDPSRNHRAYRLTVA 914

Query: 125 KLQSPVIPFMPLLLKGKTWS 144
           KL++P+IPFMPLL+K  T++
Sbjct: 915 KLEAPLIPFMPLLIKDMTFT 934

Source: Oryctolagus cuniculus

Species: Oryctolagus cuniculus

Genus: Oryctolagus

Family: Leporidae

Order: Lagomorpha

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|170065617|ref|XP_001868014.1| c-AMP-dependent rap1 guanine-nucleotide exchange factor [Culex quinquefasciatus] gi|167862556|gb|EDS25939.1| c-AMP-dependent rap1 guanine-nucleotide exchange factor [Culex quinquefasciatus]

 Score =  219 bits (559), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 97/141 (68%), Positives = 123/141 (87%)

Query: 4   YELVYHTVGRHRFQQITANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAY 63
           YEL+YHT GRH F +IT+NLDVF+RRFNEIQYWV+TEI+  ++L KR+ +++K IKLAA+
Sbjct: 680 YELLYHTFGRHHFNKITSNLDVFIRRFNEIQYWVVTEIVSTSNLTKRMSLVKKFIKLAAF 739

Query: 64  CKEYRNINALFAVLMGLSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAV 123
           CKEY+N+NA FA++MGLSN+AVSRL+ TWDKLPSK +K ++E EALIDPS+NHRAYR +V
Sbjct: 740 CKEYQNLNAFFAIVMGLSNMAVSRLTQTWDKLPSKFRKLFSEYEALIDPSRNHRAYRMSV 799

Query: 124 SKLQSPVIPFMPLLLKGKTWS 144
            KLQ PVIPFMPLLLK  T++
Sbjct: 800 GKLQPPVIPFMPLLLKDMTFA 820

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158935664|emb|CAP16665.1| cAMP-dependent exchange protein EPAC [Calliphora vicina]

 Score =  219 bits (559), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 99/142 (69%), Positives = 120/142 (84%)

Query: 3   SYELVYHTVGRHRFQQITANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAA 62
            YEL+YHT GRH F +ITANLDVFLRRFNE+QYW++TEI+   S++KRV +LRK IKLAA
Sbjct: 382 EYELLYHTFGRHHFGKITANLDVFLRRFNELQYWIVTEIVSAASMSKRVGLLRKFIKLAA 441

Query: 63  YCKEYRNINALFAVLMGLSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQA 122
           YCKEY+N+NA FA++MGLSN+AVSRL  TW+K+PSK +K Y E EALIDPS+NHRAYR  
Sbjct: 442 YCKEYQNLNAFFAIVMGLSNMAVSRLQQTWEKIPSKFRKLYQEFEALIDPSRNHRAYRVF 501

Query: 123 VSKLQSPVIPFMPLLLKGKTWS 144
           V KLQ P+IPFMPLLLK  T++
Sbjct: 502 VGKLQPPLIPFMPLLLKDMTFA 523

Source: Calliphora vicina

Species: Calliphora vicina

Genus: Calliphora

Family: Calliphoridae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|449270176|gb|EMC80885.1| Rap guanine nucleotide exchange factor 4 [Columba livia]

 Score =  219 bits (557), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 96/140 (68%), Positives = 122/140 (87%)

Query: 5   ELVYHTVGRHRFQQITANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYC 64
           EL+YHT GRH F++ TANLD+FLRRFNEIQ+WV+TEI L + L+KRVQ+L+K IK+AA+C
Sbjct: 704 ELIYHTFGRHNFKKTTANLDLFLRRFNEIQFWVVTEICLCSQLSKRVQLLKKYIKIAAHC 763

Query: 65  KEYRNINALFAVLMGLSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVS 124
           KEY+N+N+ FA++MGLSNVAVSRLSLTW+KLPSK KK Y E E+L+DPS+NHRAYR  V+
Sbjct: 764 KEYKNLNSFFAIIMGLSNVAVSRLSLTWEKLPSKFKKIYAEFESLMDPSRNHRAYRLTVA 823

Query: 125 KLQSPVIPFMPLLLKGKTWS 144
           KL  P+IPFMPLL+K  T++
Sbjct: 824 KLDPPIIPFMPLLIKDMTFT 843

Source: Columba livia

Species: Columba livia

Genus: Columba

Family: Columbidae

Order: Columbiformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	146
UNIPROTKB|H7BYQ0	187	RAPGEF4 "Rap guanine nucleotid	0.958	0.748	0.678	2.4e-51
UNIPROTKB|B7Z278	791	RAPGEF4 "cDNA FLJ50956, highly	0.958	0.176	0.678	5e-51
UNIPROTKB|F1P0M8	1034	RAPGEF4 "Uncharacterized prote	0.958	0.135	0.685	8.4e-51
UNIPROTKB|B7Z3T6	840	RAPGEF4 "Rap guanine nucleotid	0.958	0.166	0.678	8.6e-51
UNIPROTKB|B7Z283	858	RAPGEF4 "cDNA, FLJ78971, highl	0.958	0.163	0.678	9.9e-51
FB|FBgn0085421	998	Epac "Exchange protein directl	0.965	0.141	0.695	1.6e-50
UNIPROTKB|E7EVE5	1010	RAPGEF4 "Rap guanine nucleotid	0.958	0.138	0.678	2.1e-50
UNIPROTKB|Q8WZA2	1011	RAPGEF4 "Rap guanine nucleotid	0.958	0.138	0.678	2.1e-50
UNIPROTKB|F1LNE3	836	Rapgef4 "Rap guanine nucleotid	0.958	0.167	0.671	2.3e-50
UNIPROTKB|J9P4R7	858	RAPGEF4 "Uncharacterized prote	0.958	0.163	0.671	5.8e-50

UNIPROTKB|H7BYQ0 RAPGEF4 "Rap guanine nucleotide exchange factor 4" [Homo sapiens (taxid:9606)]

 Score = 533 (192.7 bits), Expect = 2.4e-51, P = 2.4e-51
 Identities = 95/140 (67%), Positives = 123/140 (87%)

Query:     5 ELVYHTVGRHRFQQITANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYC 64
             EL+YHT GRH F++ TANLD+FLRRFNEIQ+WV+TEI L + L+KRVQ+L+K IK+AA+C
Sbjct:    26 ELIYHTFGRHNFKKTTANLDLFLRRFNEIQFWVVTEICLCSQLSKRVQLLKKFIKIAAHC 85

Query:    65 KEYRNINALFAVLMGLSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVS 124
             KEY+N+N+ FA++MGLSNVAVSRL+LTW+KLPSK KK Y E E+L+DPS+NHRAYR  V+
Sbjct:    86 KEYKNLNSFFAIVMGLSNVAVSRLALTWEKLPSKFKKFYAEFESLMDPSRNHRAYRLTVA 145

Query:   125 KLQSPVIPFMPLLLKGKTWS 144
             KL+ P+IPFMPLL+K  T++
Sbjct:   146 KLEPPLIPFMPLLIKDMTFT 165

GO:0005622 "intracellular" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005085 "guanyl-nucleotide exchange factor activity" evidence=IEA

UNIPROTKB|B7Z278 RAPGEF4 "cDNA FLJ50956, highly similar to Rap guanine nucleotide exchange factor 4" [Homo sapiens (taxid:9606)]

 Score = 533 (192.7 bits), Expect = 5.0e-51, P = 5.0e-51
 Identities = 95/140 (67%), Positives = 123/140 (87%)

Query:     5 ELVYHTVGRHRFQQITANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYC 64
             EL+YHT GRH F++ TANLD+FLRRFNEIQ+WV+TEI L + L+KRVQ+L+K IK+AA+C
Sbjct:   575 ELIYHTFGRHNFKKTTANLDLFLRRFNEIQFWVVTEICLCSQLSKRVQLLKKFIKIAAHC 634

Query:    65 KEYRNINALFAVLMGLSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVS 124
             KEY+N+N+ FA++MGLSNVAVSRL+LTW+KLPSK KK Y E E+L+DPS+NHRAYR  V+
Sbjct:   635 KEYKNLNSFFAIVMGLSNVAVSRLALTWEKLPSKFKKFYAEFESLMDPSRNHRAYRLTVA 694

Query:   125 KLQSPVIPFMPLLLKGKTWS 144
             KL+ P+IPFMPLL+K  T++
Sbjct:   695 KLEPPLIPFMPLLIKDMTFT 714

GO:0005952 "cAMP-dependent protein kinase complex" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0008603 "cAMP-dependent protein kinase regulator activity" evidence=IEA

GO:0051056 "regulation of small GTPase mediated signal transduction" evidence=IEA

GO:0005088 "Ras guanyl-nucleotide exchange factor activity" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0017016 "Ras GTPase binding" evidence=IEA

GO:0017156 "calcium ion-dependent exocytosis" evidence=IEA

GO:0017157 "regulation of exocytosis" evidence=IEA

GO:0019933 "cAMP-mediated signaling" evidence=IEA

GO:0030073 "insulin secretion" evidence=IEA

GO:0030552 "cAMP binding" evidence=IEA

UNIPROTKB|F1P0M8 RAPGEF4 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 537 (194.1 bits), Expect = 8.4e-51, P = 8.4e-51
 Identities = 96/140 (68%), Positives = 122/140 (87%)

Query:     5 ELVYHTVGRHRFQQITANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYC 64
             EL+YHT GRH F++ TANLD+FLRRFNEIQ+WV+TEI L + L+KRVQ+L+K IK+AA+C
Sbjct:   818 ELIYHTFGRHNFKKTTANLDLFLRRFNEIQFWVVTEICLCSQLSKRVQLLKKYIKIAAHC 877

Query:    65 KEYRNINALFAVLMGLSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVS 124
             KEY+N+N+ FA++MGLSNVAVSRLSLTW+KLPSK KK Y E E+L+DPS+NHRAYR  V+
Sbjct:   878 KEYKNLNSFFAIIMGLSNVAVSRLSLTWEKLPSKFKKIYAEFESLMDPSRNHRAYRLTVA 937

Query:   125 KLQSPVIPFMPLLLKGKTWS 144
             KL  P+IPFMPLL+K  T++
Sbjct:   938 KLDPPIIPFMPLLIKDMTFT 957

GO:0005952 "cAMP-dependent protein kinase complex" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0008603 "cAMP-dependent protein kinase regulator activity" evidence=IEA

GO:0051056 "regulation of small GTPase mediated signal transduction" evidence=IEA

GO:0005088 "Ras guanyl-nucleotide exchange factor activity" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0017016 "Ras GTPase binding" evidence=IEA

GO:0017156 "calcium ion-dependent exocytosis" evidence=IEA

GO:0017157 "regulation of exocytosis" evidence=IEA

GO:0019933 "cAMP-mediated signaling" evidence=IEA

GO:0030073 "insulin secretion" evidence=IEA

GO:0030552 "cAMP binding" evidence=IEA

UNIPROTKB|B7Z3T6 RAPGEF4 "Rap guanine nucleotide exchange factor 4" [Homo sapiens (taxid:9606)]

 Score = 533 (192.7 bits), Expect = 8.6e-51, P = 8.6e-51
 Identities = 95/140 (67%), Positives = 123/140 (87%)

Query:     5 ELVYHTVGRHRFQQITANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYC 64
             EL+YHT GRH F++ TANLD+FLRRFNEIQ+WV+TEI L + L+KRVQ+L+K IK+AA+C
Sbjct:   624 ELIYHTFGRHNFKKTTANLDLFLRRFNEIQFWVVTEICLCSQLSKRVQLLKKFIKIAAHC 683

Query:    65 KEYRNINALFAVLMGLSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVS 124
             KEY+N+N+ FA++MGLSNVAVSRL+LTW+KLPSK KK Y E E+L+DPS+NHRAYR  V+
Sbjct:   684 KEYKNLNSFFAIVMGLSNVAVSRLALTWEKLPSKFKKFYAEFESLMDPSRNHRAYRLTVA 743

Query:   125 KLQSPVIPFMPLLLKGKTWS 144
             KL+ P+IPFMPLL+K  T++
Sbjct:   744 KLEPPLIPFMPLLIKDMTFT 763

GO:0005952 "cAMP-dependent protein kinase complex" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0008603 "cAMP-dependent protein kinase regulator activity" evidence=IEA

GO:0051056 "regulation of small GTPase mediated signal transduction" evidence=IEA

GO:0005085 "guanyl-nucleotide exchange factor activity" evidence=IEA

UNIPROTKB|B7Z283 RAPGEF4 "cDNA, FLJ78971, highly similar to Rap guanine nucleotide exchange factor 4" [Homo sapiens (taxid:9606)]

 Score = 533 (192.7 bits), Expect = 9.9e-51, P = 9.9e-51
 Identities = 95/140 (67%), Positives = 123/140 (87%)

Query:     5 ELVYHTVGRHRFQQITANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYC 64
             EL+YHT GRH F++ TANLD+FLRRFNEIQ+WV+TEI L + L+KRVQ+L+K IK+AA+C
Sbjct:   642 ELIYHTFGRHNFKKTTANLDLFLRRFNEIQFWVVTEICLCSQLSKRVQLLKKFIKIAAHC 701

Query:    65 KEYRNINALFAVLMGLSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVS 124
             KEY+N+N+ FA++MGLSNVAVSRL+LTW+KLPSK KK Y E E+L+DPS+NHRAYR  V+
Sbjct:   702 KEYKNLNSFFAIVMGLSNVAVSRLALTWEKLPSKFKKFYAEFESLMDPSRNHRAYRLTVA 761

Query:   125 KLQSPVIPFMPLLLKGKTWS 144
             KL+ P+IPFMPLL+K  T++
Sbjct:   762 KLEPPLIPFMPLLIKDMTFT 781

GO:0005952 "cAMP-dependent protein kinase complex" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0008603 "cAMP-dependent protein kinase regulator activity" evidence=IEA

GO:0051056 "regulation of small GTPase mediated signal transduction" evidence=IEA

GO:0005088 "Ras guanyl-nucleotide exchange factor activity" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0017016 "Ras GTPase binding" evidence=IEA

GO:0017156 "calcium ion-dependent exocytosis" evidence=IEA

GO:0017157 "regulation of exocytosis" evidence=IEA

GO:0019933 "cAMP-mediated signaling" evidence=IEA

GO:0030073 "insulin secretion" evidence=IEA

GO:0030552 "cAMP binding" evidence=IEA

FB|FBgn0085421 Epac "Exchange protein directly activated by cAMP ortholog (H. sapiens)" [Drosophila melanogaster (taxid:7227)]

 Score = 534 (193.0 bits), Expect = 1.6e-50, P = 1.6e-50
 Identities = 98/141 (69%), Positives = 120/141 (85%)

Query:     4 YELVYHTVGRHRFQQITANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAY 63
             YEL+YHT GRH F +ITANLDVFLRRFNE+QYW++TE++   SL+KRV ++RK IKLAAY
Sbjct:   781 YELLYHTFGRHHFGKITANLDVFLRRFNEVQYWIVTELVSTPSLSKRVGLVRKFIKLAAY 840

Query:    64 CKEYRNINALFAVLMGLSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAV 123
             CKEY+N+NA FAV+MGLSN+AVSRL  TW+K+PSK +K + E EALIDPS+NHRAYR  V
Sbjct:   841 CKEYQNLNAFFAVVMGLSNMAVSRLQQTWEKIPSKFRKIFQEFEALIDPSRNHRAYRVFV 900

Query:   124 SKLQSPVIPFMPLLLKGKTWS 144
              KLQ P+IPFMPLLLK  T++
Sbjct:   901 GKLQPPLIPFMPLLLKDMTFA 921

GO:0017132 "cyclic nucleotide-dependent guanyl-nucleotide exchange factor activity" evidence=ISS

GO:0017034 "Rap guanyl-nucleotide exchange factor activity" evidence=ISS

GO:0008603 "cAMP-dependent protein kinase regulator activity" evidence=IEA

GO:0001932 "regulation of protein phosphorylation" evidence=IEA

GO:0005952 "cAMP-dependent protein kinase complex" evidence=IEA

GO:0051056 "regulation of small GTPase mediated signal transduction" evidence=IEA

UNIPROTKB|E7EVE5 RAPGEF4 "Rap guanine nucleotide exchange factor 4" [Homo sapiens (taxid:9606)]

 Score = 533 (192.7 bits), Expect = 2.1e-50, P = 2.1e-50
 Identities = 95/140 (67%), Positives = 123/140 (87%)

Query:     5 ELVYHTVGRHRFQQITANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYC 64
             EL+YHT GRH F++ TANLD+FLRRFNEIQ+WV+TEI L + L+KRVQ+L+K IK+AA+C
Sbjct:   794 ELIYHTFGRHNFKKTTANLDLFLRRFNEIQFWVVTEICLCSQLSKRVQLLKKFIKIAAHC 853

Query:    65 KEYRNINALFAVLMGLSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVS 124
             KEY+N+N+ FA++MGLSNVAVSRL+LTW+KLPSK KK Y E E+L+DPS+NHRAYR  V+
Sbjct:   854 KEYKNLNSFFAIVMGLSNVAVSRLALTWEKLPSKFKKFYAEFESLMDPSRNHRAYRLTVA 913

Query:   125 KLQSPVIPFMPLLLKGKTWS 144
             KL+ P+IPFMPLL+K  T++
Sbjct:   914 KLEPPLIPFMPLLIKDMTFT 933

GO:0005952 "cAMP-dependent protein kinase complex" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0008603 "cAMP-dependent protein kinase regulator activity" evidence=IEA

GO:0051056 "regulation of small GTPase mediated signal transduction" evidence=IEA

GO:0005085 "guanyl-nucleotide exchange factor activity" evidence=IEA

UNIPROTKB|Q8WZA2 RAPGEF4 "Rap guanine nucleotide exchange factor 4" [Homo sapiens (taxid:9606)]

 Score = 533 (192.7 bits), Expect = 2.1e-50, P = 2.1e-50
 Identities = 95/140 (67%), Positives = 123/140 (87%)

Query:     5 ELVYHTVGRHRFQQITANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYC 64
             EL+YHT GRH F++ TANLD+FLRRFNEIQ+WV+TEI L + L+KRVQ+L+K IK+AA+C
Sbjct:   795 ELIYHTFGRHNFKKTTANLDLFLRRFNEIQFWVVTEICLCSQLSKRVQLLKKFIKIAAHC 854

Query:    65 KEYRNINALFAVLMGLSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVS 124
             KEY+N+N+ FA++MGLSNVAVSRL+LTW+KLPSK KK Y E E+L+DPS+NHRAYR  V+
Sbjct:   855 KEYKNLNSFFAIVMGLSNVAVSRLALTWEKLPSKFKKFYAEFESLMDPSRNHRAYRLTVA 914

Query:   125 KLQSPVIPFMPLLLKGKTWS 144
             KL+ P+IPFMPLL+K  T++
Sbjct:   915 KLEPPLIPFMPLLIKDMTFT 934

GO:0005952 "cAMP-dependent protein kinase complex" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0008603 "cAMP-dependent protein kinase regulator activity" evidence=IEA

GO:0051056 "regulation of small GTPase mediated signal transduction" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0017156 "calcium ion-dependent exocytosis" evidence=IEA

GO:0017157 "regulation of exocytosis" evidence=IEA

GO:0019933 "cAMP-mediated signaling" evidence=IEA

GO:0030073 "insulin secretion" evidence=IEA

GO:0005088 "Ras guanyl-nucleotide exchange factor activity" evidence=ISS

GO:0030552 "cAMP binding" evidence=ISS

GO:0017016 "Ras GTPase binding" evidence=ISS

GO:0005085 "guanyl-nucleotide exchange factor activity" evidence=TAS

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0016020 "membrane" evidence=TAS

GO:0005886 "plasma membrane" evidence=TAS

GO:0006112 "energy reserve metabolic process" evidence=TAS

GO:0007596 "blood coagulation" evidence=TAS

GO:0030168 "platelet activation" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0050796 "regulation of insulin secretion" evidence=TAS

UNIPROTKB|F1LNE3 Rapgef4 "Rap guanine nucleotide exchange factor 4" [Rattus norvegicus (taxid:10116)]

 Score = 529 (191.3 bits), Expect = 2.3e-50, P = 2.3e-50
 Identities = 94/140 (67%), Positives = 122/140 (87%)

Query:     5 ELVYHTVGRHRFQQITANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYC 64
             EL+YHT GRH F++ TANLD+FLRRFNEIQ+WV+TEI L + L+KRVQ+L+K IK+AA+C
Sbjct:   620 ELIYHTFGRHNFKKTTANLDLFLRRFNEIQFWVVTEICLCSQLSKRVQLLKKFIKIAAHC 679

Query:    65 KEYRNINALFAVLMGLSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVS 124
             KEY+N+N+ FA++MGLSNVAVSRL+LTW+KLPSK KK Y E E+L+DPS+NHRAYR   +
Sbjct:   680 KEYKNLNSFFAIVMGLSNVAVSRLALTWEKLPSKFKKFYAEFESLMDPSRNHRAYRLTAA 739

Query:   125 KLQSPVIPFMPLLLKGKTWS 144
             KL+ P+IPFMPLL+K  T++
Sbjct:   740 KLEPPLIPFMPLLIKDMTFT 759

GO:0005085 "guanyl-nucleotide exchange factor activity" evidence=IEA

GO:0005952 "cAMP-dependent protein kinase complex" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0008603 "cAMP-dependent protein kinase regulator activity" evidence=IEA

GO:0051056 "regulation of small GTPase mediated signal transduction" evidence=IEA

UNIPROTKB|J9P4R7 RAPGEF4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 526 (190.2 bits), Expect = 5.8e-50, P = 5.8e-50
 Identities = 94/140 (67%), Positives = 122/140 (87%)

Query:     5 ELVYHTVGRHRFQQITANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYC 64
             EL+YHT GRH F++ TANLD+FLRRFNEIQ+WV+TEI L +  +KRVQ+L+K IK+AA+C
Sbjct:   642 ELIYHTFGRHNFKKTTANLDLFLRRFNEIQFWVVTEICLCSQPSKRVQLLKKFIKIAAHC 701

Query:    65 KEYRNINALFAVLMGLSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVS 124
             KEY+N+N+ FA++MGLSNVAVSRL+LTW+KLPSK KK Y E E+L+DPS+NHRAYR  V+
Sbjct:   702 KEYKNLNSFFAIVMGLSNVAVSRLALTWEKLPSKFKKFYAEFESLMDPSRNHRAYRLTVA 761

Query:   125 KLQSPVIPFMPLLLKGKTWS 144
             KL+ P+IPFMPLL+K  T++
Sbjct:   762 KLEPPLIPFMPLLIKDMTFT 781

GO:0051056 "regulation of small GTPase mediated signal transduction" evidence=IEA

GO:0008603 "cAMP-dependent protein kinase regulator activity" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005952 "cAMP-dependent protein kinase complex" evidence=IEA

GO:0005085 "guanyl-nucleotide exchange factor activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P34578	RPGF1_CAEEL	No assigned EC number	0.5251	0.9383	0.1319	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	146
pfam00617	185	pfam00617, RasGEF, RasGEF domain	1e-51
smart00147	242	smart00147, RasGEF, Guanine nucleotide exchange fa	2e-46
cd00155	237	cd00155, RasGEF, Guanine nucleotide exchange facto	1e-42

>gnl|CDD|216025 pfam00617, RasGEF, RasGEF domain

 Score =  161 bits (410), Expect = 1e-51
 Identities = 56/138 (40%), Positives = 85/138 (61%), Gaps = 1/138 (0%)

Query: 2   SSYELVYHTVGRHRFQQITANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLA 61
              EL+    G+   +  + N++ F+ RFN++  WV TEIL    L KR ++++K IK+A
Sbjct: 24  DPRELLDSAWGKKDSKL-SPNIEAFISRFNQLSRWVATEILSEEDLKKRAKVIKKFIKIA 82

Query: 62  AYCKEYRNINALFAVLMGLSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQ 121
            +C+E  N N+L A++ GL++  +SRL  TW+ +  K KK   ELE L+ PSKN + YR+
Sbjct: 83  QHCRELNNFNSLMAIISGLNSSPISRLKKTWELVSKKYKKLLEELEELMSPSKNFKNYRE 142

Query: 122 AVSKLQSPVIPFMPLLLK 139
           A+ K   P IPF+ L LK
Sbjct: 143 ALKKANPPCIPFLGLYLK 160

Guanine nucleotide exchange factor for Ras-like small GTPases. Length = 185

>gnl|CDD|214539 smart00147, RasGEF, Guanine nucleotide exchange factor for Ras-like small GTPases

 Score =  150 bits (381), Expect = 2e-46
 Identities = 60/137 (43%), Positives = 88/137 (64%), Gaps = 2/137 (1%)

Query: 5   ELVYHTVGRHRFQ-QITANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAY 63
           EL+    G+   +     NL+ F+RRFNE+  WV TEIL  T+   R ++L K I++A +
Sbjct: 28  ELLGSVWGKRSKKSPSPLNLEAFIRRFNEVSNWVATEILKQTTPKDRAELLSKFIQVAKH 87

Query: 64  CKEYRNINALFAVLMGLSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAV 123
           C+E  N N+L A++  LS+  +SRL  TW+KLPSK KK + ELE L+ P +N++ YR+A+
Sbjct: 88  CRELNNFNSLMAIVSALSSSPISRLKKTWEKLPSKYKKLFEELEELLSPERNYKNYREAL 147

Query: 124 SKL-QSPVIPFMPLLLK 139
           S     P IPF+ +LLK
Sbjct: 148 SSCNLPPCIPFLGVLLK 164

Length = 242

>gnl|CDD|238087 cd00155, RasGEF, Guanine nucleotide exchange factor for Ras-like small GTPases

 Score =  140 bits (355), Expect = 1e-42
 Identities = 54/142 (38%), Positives = 88/142 (61%), Gaps = 3/142 (2%)

Query: 1   MSSYELVYHTVG-RHRFQQITANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIK 59
           +  +EL+      + +   ++ NL+ F+ RFN +  WV +EILL T+  KR ++L K I+
Sbjct: 24  IEPFELLGSLWSKKDKNIHLSPNLERFIERFNNLSNWVASEILLCTNPKKRARLLSKFIQ 83

Query: 60  LAAYCKEYRNINALFAVLMGLSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAY 119
           +A +C+E  N N+L A++  LS+  +SRL  TW+ L SK KK + ELE L+DPS+N + Y
Sbjct: 84  VAKHCRELNNFNSLMAIVSALSSSPISRLKKTWEVLSSKLKKLFEELEELVDPSRNFKNY 143

Query: 120 RQAVSKL--QSPVIPFMPLLLK 139
           R+ +  +    P +PF+ + LK
Sbjct: 144 RKLLKSVGPNPPCVPFLGVYLK 165

Small GTP-binding proteins of the Ras superfamily function as molecular switches in fundamental events such as signal transduction, cytoskeleton dynamics and intracellular trafficking. Guanine-nucleotide-exchange factors (GEFs) positively regulate these GTP-binding proteins in response to a variety of signals. GEFs catalyze the dissociation of GDP from the inactive GTP-binding proteins. GTP can then bind and induce structural changes that allow interaction with effectors. Length = 237

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	146
smart00147	242	RasGEF Guanine nucleotide exchange factor for Ras-	100.0
cd00155	237	RasGEF Guanine nucleotide exchange factor for Ras-	100.0
PF00617	188	RasGEF: RasGEF domain; InterPro: IPR001895 Ras pro	100.0
KOG3542|consensus	1283		99.96
KOG2378|consensus	573		99.95
KOG3629|consensus	728		99.94
KOG3541|consensus	477		99.88
KOG3417|consensus	840		99.84
KOG3417|consensus	840		99.41

>smart00147 RasGEF Guanine nucleotide exchange factor for Ras-like small GTPases

Probab=100.00  E-value=3.1e-42  Score=262.21  Aligned_cols=145  Identities=41%  Similarity=0.711  Sum_probs=141.3

Q ss_pred             CCccchhhccccCCCCCCCCc-hHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhhcCChHHHHHHHHh
Q psy11553          1 MSSYELVYHTVGRHRFQQITA-NLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYCKEYRNINALFAVLMG   79 (146)
Q Consensus         1 ~~p~El~~~~w~~~~~~~~~p-ni~~~~~~~n~ls~wv~~~IL~~~~~~~Ra~~i~~~I~va~~~~~l~Nf~s~~aI~~a   79 (146)
                      |+|.||++..|++.+....+| ||.+++++||.++.||+.+||.++++++|++++++||+||.+|.++|||||++||++|
T Consensus        24 I~~~El~~~~~~~~~~~~~~p~~i~~~~~~~n~is~wv~~~Il~~~~~~~R~~~i~~fI~ia~~l~~l~Nfns~~aI~~~  103 (242)
T smart00147       24 IDPSELLGSVWGKRSKKSPSPLNLERFIERFNEVSNWVATEILKQTTPKDRAELLSKFIQVAKHCRELNNFNSLMAIVSA  103 (242)
T ss_pred             CCHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            789999999999998888888 9999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchhhhhchHHhhccCCcchHHHHHHHHcccCCCchHHHHHHHHhcCC-CCcccccchhhhhhhhhc
Q psy11553         80 LSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVSKLQ-SPVIPFMPLLLKGKTWSR  145 (146)
Q Consensus        80 L~~~~I~RLk~tw~~l~~~~~~~~~~l~~l~~~~~n~~~yR~~l~~~~-~p~IP~lg~~l~dl~~i~  145 (146)
                      |++++|.||+.||+.++++.++.|++|++++++++||++||+.++++. +|||||+|++|+|+++++
T Consensus       104 L~~~~I~RL~~tw~~l~~~~~~~~~~L~~l~s~~~n~~~yR~~l~~~~~~p~IP~lg~~l~dl~~~~  170 (242)
T smart00147      104 LSSSPISRLKKTWEKLPSKYKKLFEELEELLSPERNFKNYREALSSCNLPPCVPFLGVLLKDLTFID  170 (242)
T ss_pred             hCChHHhhhHHHHHHCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCccchHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999988 999999999999999874

>cd00155 RasGEF Guanine nucleotide exchange factor for Ras-like small GTPases

Probab=100.00  E-value=5e-42  Score=260.13  Aligned_cols=145  Identities=38%  Similarity=0.707  Sum_probs=140.3

Q ss_pred             CCccchhhccccCCCCC-CCCchHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhhcCChHHHHHHHHh
Q psy11553          1 MSSYELVYHTVGRHRFQ-QITANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYCKEYRNINALFAVLMG   79 (146)
Q Consensus         1 ~~p~El~~~~w~~~~~~-~~~pni~~~~~~~n~ls~wv~~~IL~~~~~~~Ra~~i~~~I~va~~~~~l~Nf~s~~aI~~a   79 (146)
                      |+|.||++..|+++... +.+|||.+++++||.++.||+.+||+++++++|++++++||+||.+|.++||||+++||++|
T Consensus        24 I~~~El~~~~~~~~~~~~~~~p~i~~~~~~~n~ls~wv~~~Il~~~~~~~R~~~i~~~I~ia~~l~~l~Nfns~~aI~~~  103 (237)
T cd00155          24 IEPFELLGSLWSKKDKNIHLSPNLERFIERFNNLSNWVASEILLCTNPKKRARLLSKFIQVAKHCRELNNFNSLMAIVSA  103 (237)
T ss_pred             CCHHHHHHHHHCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            78999999999988766 48999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchhhhhchHHhhccCCcchHHHHHHHHcccCCCchHHHHHHHHhcC--CCCcccccchhhhhhhhhc
Q psy11553         80 LSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVSKL--QSPVIPFMPLLLKGKTWSR  145 (146)
Q Consensus        80 L~~~~I~RLk~tw~~l~~~~~~~~~~l~~l~~~~~n~~~yR~~l~~~--~~p~IP~lg~~l~dl~~i~  145 (146)
                      |++++|.||++||+.++++.++.|++|..++++++||++||+.++++  ++|||||+|++++||++++
T Consensus       104 L~~~~I~RL~~tw~~l~~~~~~~~~~l~~l~~~~~n~~~yr~~l~~~~~~~p~IP~lg~~l~dl~~~~  171 (237)
T cd00155         104 LSSSPISRLKKTWEVLSSKLKKLFEELEELVDPSRNFKNYRKLLKSVGPNPPCVPFLGVYLKDLTFLH  171 (237)
T ss_pred             hCCccchhHHHHHHHCCHHHHHHHHHHHHHhCcHhhHHHHHHHHHhcCCCCCCeeehhHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999998  8999999999999999874

Small GTP-binding proteins of the Ras superfamily function as molecular switches in fundamental events such as signal transduction, cytoskeleton dynamics and intracellular trafficking. Guanine-nucleotide-exchange factors (GEFs) positively regulate these GTP-binding proteins in response to a variety of signals. GEFs catalyze the dissociation of GDP from the inactive GTP-binding proteins. GTP can then bind and induce structural changes that allow interaction with effectors.

>PF00617 RasGEF: RasGEF domain; InterPro: IPR001895 Ras proteins are membrane-associated molecular switches that bind GTP and GDP and slowly hydrolyze GTP to GDP []

Probab=100.00  E-value=1.2e-41  Score=249.10  Aligned_cols=145  Identities=36%  Similarity=0.638  Sum_probs=135.5

Q ss_pred             CCccchhhccccCCCCCC-CCchHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhhcCChHHHHHHHHh
Q psy11553          1 MSSYELVYHTVGRHRFQQ-ITANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYCKEYRNINALFAVLMG   79 (146)
Q Consensus         1 ~~p~El~~~~w~~~~~~~-~~pni~~~~~~~n~ls~wv~~~IL~~~~~~~Ra~~i~~~I~va~~~~~l~Nf~s~~aI~~a   79 (146)
                      |+|.|+++..|++++... .+|||.+++++||.++.||+.+||+++++++|++++++||+||.+|.++|||+|++||++|
T Consensus        23 I~~~e~~~~~~~~~~~~~~~~~~i~~~~~~~n~ls~wv~~~Il~~~~~~~R~~~i~~~I~va~~l~~l~Nf~s~~aI~~~  102 (188)
T PF00617_consen   23 IKPSELLYSVWSKSDKKENQSPNINKLIDRFNKLSNWVISEILSQPDPEERAKIIEKFIQVAKKLYELGNFNSLMAILSA  102 (188)
T ss_dssp             SSHHHHHGGGGGSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHTTBHHHHHHHHHH
T ss_pred             CCHHHHHHHHhcCCCCCCccChhHHHHHHHhhhHHHHHHHHhhccccHHHHHHHHHHHHhHHHHHHHhcCchHHHHHHHH
Confidence            689999999999865444 5899999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchhhhhchHHhhccCCcchHHHHHHHHcccCCCchHHHHHHHHhcCCC-Ccccccchhhhhhhhhc
Q psy11553         80 LSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVSKLQS-PVIPFMPLLLKGKTWSR  145 (146)
Q Consensus        80 L~~~~I~RLk~tw~~l~~~~~~~~~~l~~l~~~~~n~~~yR~~l~~~~~-p~IP~lg~~l~dl~~i~  145 (146)
                      |++++|.||++||+.++++.++.|++|+.++++++||+.||+++++.++ |||||+|++++|+++++
T Consensus       103 L~s~~i~rL~~tw~~l~~~~~~~~~~l~~l~~~~~~~~~yr~~~~~~~~~~~IP~lg~~l~dl~~~~  169 (188)
T PF00617_consen  103 LNSSSIQRLKKTWKSLSKKSKKTFEELESLFSPSNNYKNYREALKKCNPQPCIPFLGIFLKDLIFIE  169 (188)
T ss_dssp             HTSHHHHT-HHHHHTSHHHHHHHHHHHHHHTHHHHHHHHHHHHHHTSTSSSSB--HHHHHHHHHHHH
T ss_pred             hccccccchhhhhhhhHHHHHHHHHHHHhhcccchhhHHHHHhhcccccCceecccHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999998887 99999999999999874

The balance between the GTP bound (active) and GDP bound (inactive) states is regulated by the opposite action of proteins activating the GTPase activity and that of proteins which promote the loss of bound GDP and the uptake of fresh GTP [, ]. The latter proteins are known as guanine-nucleotide dissociation stimulators (GDSs) (or also as guanine-nucleotide releasing (or exchange) factors (GRFs)). Proteins that act as GDS can be classified into at least two families, on the basis of sequence similarities, the CDC24 family (see IPR001331 from INTERPRO) and the CDC25 family. The size of the proteins of the CDC25 family range from 309 residues (LTE1) to 1596 residues (sos). The sequence similarity shared by all these proteins is limited to a region of about 250 amino acids generally located in their C-terminal section (currently the only exceptions are sos and ralGDS where this domain makes up the central part of the protein). This domain has been shown, in CDC25 an SCD25, to be essential for the activity of these proteins.; GO: 0005085 guanyl-nucleotide exchange factor activity, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IJE_S 3T6G_A 1NVW_S 1BKD_S 1XDV_A 2II0_A 1NVU_S 1NVX_S 1NVV_S 1XD4_B ....

>KOG3542|consensus

Probab=99.96  E-value=8.4e-30  Score=211.47  Aligned_cols=144  Identities=35%  Similarity=0.642  Sum_probs=136.8

Q ss_pred             CCccchhhccccCCCCCCCCchHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhhcCChHHHHHHHHhc
Q psy11553          1 MSSYELVYHTVGRHRFQQITANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYCKEYRNINALFAVLMGL   80 (146)
Q Consensus         1 ~~p~El~~~~w~~~~~~~~~pni~~~~~~~n~ls~wv~~~IL~~~~~~~Ra~~i~~~I~va~~~~~l~Nf~s~~aI~~aL   80 (146)
                      |+|.|+++..+ |-+.+..+|++.++-+-||+-..||+++||.+.+..+|+++|++||+||.+|++++|||+++||++||
T Consensus       887 IEPTEyiDdLF-KL~SKtg~~~LkrFE~l~NqEtfWVAsEIltE~nqlKRmKiIKhFIKiAlhCReckNFNSMFAIiSGL  965 (1283)
T KOG3542|consen  887 IEPTEYIDDLF-KLDSKTGSPKLKRFEQLFNQETFWVASEILTERNQLKRMKIIKHFIKIALHCRECKNFNSMFAIISGL  965 (1283)
T ss_pred             CChHHHHHHHH-hhccccCCccHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHhcC
Confidence            78999999776 44556689999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhhhhchHHhhccCCcchHHHHHHHHcccCCCchHHHHHHHHhcC--CCCcccccchhhhhhhhhc
Q psy11553         81 SNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVSKL--QSPVIPFMPLLLKGKTWSR  145 (146)
Q Consensus        81 ~~~~I~RLk~tw~~l~~~~~~~~~~l~~l~~~~~n~~~yR~~l~~~--~~p~IP~lg~~l~dl~~i~  145 (146)
                      +.++|.||..||+.+|.++.+.++.|+++++|++|..+||+.+...  ++|.||.+.++=+||||+|
T Consensus       966 nla~VaRLr~tWEklpsKYek~lqdlqdlfDPSRNMaKYRn~L~sq~~qPPiiPlfPViKKDlTFlH 1032 (1283)
T KOG3542|consen  966 NLAAVARLRSTWEKLPSKYEKMLQDLQDLFDPSRNMAKYRNHLASQAQQPPIIPLFPVIKKDLTFLH 1032 (1283)
T ss_pred             chHHHHHHhhhHhhccHHHHHHHHHHHHhhCchhhHHHHHHHHHhhccCCCccccchheeccceeee
Confidence            9999999999999999999999999999999999999999999764  6999999999999999987

>KOG2378|consensus

Probab=99.95  E-value=1.1e-28  Score=197.03  Aligned_cols=145  Identities=57%  Similarity=0.900  Sum_probs=140.3

Q ss_pred             CCccchhhcccc-CCCCCCCCchHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhhcCChHHHHHHHHh
Q psy11553          1 MSSYELVYHTVG-RHRFQQITANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYCKEYRNINALFAVLMG   79 (146)
Q Consensus         1 ~~p~El~~~~w~-~~~~~~~~pni~~~~~~~n~ls~wv~~~IL~~~~~~~Ra~~i~~~I~va~~~~~l~Nf~s~~aI~~a   79 (146)
                      ||.-||+++..+ ...++..+.|+..+..+||.+..|++.+|+.++.+.+|++++++||++|.+|++..|.++++||++|
T Consensus       356 ih~~ElI~y~i~~q~~~~~~tanleLl~~R~neVq~wv~tei~lc~ql~kr~qllkkfiKiaal~ke~~~l~sffAV~~G  435 (573)
T KOG2378|consen  356 IHENELIHYVIGGQIPCDRNTANLELLLRRFNEVQHWVATEILLCQQLGKRCQLLKKFIKIAALCKEGENLNSFFAVVMG  435 (573)
T ss_pred             hhHhHhhHhhhcccCCCCccchhHHHHHHHHhhchhhhhchhhhhcchhHHHHHHHHHHHHHHHHHhhccccchHHHhhc
Confidence            688899999998 5566778899999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchhhhhchHHhhccCCcchHHHHHHHHcccCCCchHHHHHHHHhcCCCCcccccchhhhhhhhhc
Q psy11553         80 LSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVSKLQSPVIPFMPLLLKGKTWSR  145 (146)
Q Consensus        80 L~~~~I~RLk~tw~~l~~~~~~~~~~l~~l~~~~~n~~~yR~~l~~~~~p~IP~lg~~l~dl~~i~  145 (146)
                      |+..+|+||..||+.+|.+.++.|.++..+++|..|++.||.+..+..+|.|||+...++|++|+|
T Consensus       436 L~~~avSrl~~tweklP~k~kk~~s~~enl~dP~~nhr~yR~l~~km~pp~ipf~PlllkD~tf~h  501 (573)
T KOG2378|consen  436 LSNRAVSRLDLTWEKLPYKFKKLFSELENLLDPCRNHRTYRLLSSKMSPPYIPFMPLLLKDLTFIH  501 (573)
T ss_pred             chhHHHHhhhcccccCchHHHhHHHHHHhcCCchhhhHHHHHHHHhcCCCCCCccchhhhhceeec
Confidence            999999999999999999999999999999999999999999999999999999999999999987

>KOG3629|consensus

Probab=99.94  E-value=2.1e-27  Score=192.71  Aligned_cols=144  Identities=19%  Similarity=0.348  Sum_probs=133.1

Q ss_pred             CccchhhccccCCCC-CCCCchHHHHHHHHHHHHHHHHHHhcCCC-ChhHHHHHHHHHHHHHHHhhhcCChHHHHHHHHh
Q psy11553          2 SSYELVYHTVGRHRF-QQITANLDVFLRRFNEIQYWVITEILLVT-SLNKRVQILRKMIKLAAYCKEYRNINALFAVLMG   79 (146)
Q Consensus         2 ~p~El~~~~w~~~~~-~~~~pni~~~~~~~n~ls~wv~~~IL~~~-~~~~Ra~~i~~~I~va~~~~~l~Nf~s~~aI~~a   79 (146)
                      =|+.|+++.|++.+. ++.+|.|.+-|..||.++.-|+++||..+ .+++||++|+|||+||.+|+-+.||.++.|++++
T Consensus       235 ~phqClGcvWs~Rd~~ghl~ptvrATi~QFN~vs~~Vvssilg~~lrp~qRAkiieKWI~iA~E~rllknfssl~avvsa  314 (728)
T KOG3629|consen  235 LPHQCLGCVWSKRDTAGHLVPTVRATIEQFNSVSQRVVSSILGPDLRPEQRAKIIEKWIDIARECRLLKNFSSLKAVVSA  314 (728)
T ss_pred             hhHhcccceeccCCCcccccchHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHhhhccceeeecc
Confidence            378899999998765 58999999999999999999999999976 7899999999999999999999999999999999


Q ss_pred             cchhhhhchHHhhccCCcchHHHHHHHHcccCCCchHHHHHHHHhcC-----------------------CCCcccccch
Q psy11553         80 LSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVSKL-----------------------QSPVIPFMPL  136 (146)
Q Consensus        80 L~~~~I~RLk~tw~~l~~~~~~~~~~l~~l~~~~~n~~~yR~~l~~~-----------------------~~p~IP~lg~  136 (146)
                      |++.+|+||+.+|..++.+....|++|.++++.++|+.+-|+.|-+.                       ....|||+|.
T Consensus       315 lqs~pihrlk~aw~~v~rdsls~f~els~ifse~~n~~~sReLL~qeGtsksspLe~s~k~a~~r~qr~~~qGtVPyLGt  394 (728)
T KOG3629|consen  315 LQSEPIHRLKSAWNSVPRDSISQFRELSSIFSEDGNQGNSRELLIQEGTSKSSPLEASPKRAHARWQRQDKQGTVPYLGT  394 (728)
T ss_pred             ccccHHHHHHhhhccCchhHHHHHHHHHhhcccccCCcchhHHHHHhcccccCCCCcchhhhhhhhhhccCCcccchHHH
Confidence            99999999999999999999999999999999999999888877431                       1458999999


Q ss_pred             hhhhhhhhc
Q psy11553        137 LLKGKTWSR  145 (146)
Q Consensus       137 ~l~dl~~i~  145 (146)
                      ||+||+++|
T Consensus       395 FLtDLvMlD  403 (728)
T KOG3629|consen  395 FLTDLVMLD  403 (728)
T ss_pred             HHHHHHHHh
Confidence            999999987

>KOG3541|consensus

Probab=99.88  E-value=1.3e-22  Score=160.58  Aligned_cols=123  Identities=31%  Similarity=0.460  Sum_probs=113.8

Q ss_pred             CchHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhhcCChHHHHHHHHhcchhhhhchHHhhccCCcch
Q psy11553         20 TANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYCKEYRNINALFAVLMGLSNVAVSRLSLTWDKLPSKS   99 (146)
Q Consensus        20 ~pni~~~~~~~n~ls~wv~~~IL~~~~~~~Ra~~i~~~I~va~~~~~l~Nf~s~~aI~~aL~~~~I~RLk~tw~~l~~~~   99 (146)
                      .-.+.+++++||+|+..++.++|.....+.|+.++++||++|.+|.++||||++|||+.|++-++|.|||+||..|.   
T Consensus       260 ~ysie~y~~wfn~Lsa~~Atevlk~~kk~~rsamlef~iD~arec~nignfnSmmai~~~lnL~avarlkktw~kv~---  336 (477)
T KOG3541|consen  260 DYSIERYMSWFNHLSALCATEVLKAAKKQTRSAMLEFLIDLARECFNIGNFNSMMAIGPGLNLNAVARLKKTWIKVR---  336 (477)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhhhhccCCCCchHHHHHHHHHHHH---
Confidence            34799999999999999999999998999999999999999999999999999999999999999999999999984   


Q ss_pred             HHHHHHHHcccCCCchHHHHHHHHhcC-----------CCCcccccchhhhhhhhhc
Q psy11553        100 KKTYTELEALIDPSKNHRAYRQAVSKL-----------QSPVIPFMPLLLKGKTWSR  145 (146)
Q Consensus       100 ~~~~~~l~~l~~~~~n~~~yR~~l~~~-----------~~p~IP~lg~~l~dl~~i~  145 (146)
                      ...|+-|+.-++|..||.+||.+++.+           ....|||+..+|+|+.+|+
T Consensus       337 taK~e~lehqmdps~nflsyr~t~Kaa~wrs~sang~~ekaviPff~l~Lkdl~~i~  393 (477)
T KOG3541|consen  337 TAKFEALEHQMDPSSNFLSYRLTDKAAKWRSPSANGAPEKAVIPFFTLFLKDLLDIS  393 (477)
T ss_pred             HHHHHHHHhcCCchhhhHHHHHHHHHHhhcCccccCCCccccccchhhhHHHHHHHH
Confidence            467888999999999999999998753           2458999999999999875

>KOG3417|consensus

Probab=99.84  E-value=2.4e-21  Score=169.23  Aligned_cols=144  Identities=27%  Similarity=0.394  Sum_probs=135.5

Q ss_pred             CCccchhhccccCCCCCCCCchHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhhcCChHHHHHHHHhc
Q psy11553          1 MSSYELVYHTVGRHRFQQITANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYCKEYRNINALFAVLMGL   80 (146)
Q Consensus         1 ~~p~El~~~~w~~~~~~~~~pni~~~~~~~n~ls~wv~~~IL~~~~~~~Ra~~i~~~I~va~~~~~l~Nf~s~~aI~~aL   80 (146)
                      |.|.|+++++|.+.++...+||+.+++.++|.++.||..+|+..+..+.|+.++.+++++|.++.+++|||+++++++|+
T Consensus       235 iq~~e~~~~~~~~~~~~~~~P~~~~~~~~~~~~s~wv~~~il~~e~l~~r~~~~~~~L~~a~~~~el~n~~~~~~~v~~~  314 (840)
T KOG3417|consen  235 IQPFELLSQSWLKKDKKINSPNIESSTSRFNHLSSWVEQEILNAEQLEERAEVILHFLEVAAKLSELNNLNSLMEVVSGL  314 (840)
T ss_pred             cCHHHHHHhhhhhcccccCCCchhhhhhcccchHHHHHHHHhccccHHHHHHhhHHHHHHhhhhhhccccccHHHHHhcc
Confidence            56899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhhhhchHHhhccCCcchHHHHHHHHcccCCCchHHHHHHHHhcCCC-Ccccccchhhhh-hhhh
Q psy11553         81 SNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVSKLQS-PVIPFMPLLLKG-KTWS  144 (146)
Q Consensus        81 ~~~~I~RLk~tw~~l~~~~~~~~~~l~~l~~~~~n~~~yR~~l~~~~~-p~IP~lg~~l~d-l~~i  144 (146)
                      ++.++.||+.+|+.++.+.++.+..+..+....++|+.||..+..++. ||||++|+++.| +..+
T Consensus       315 ~~s~i~~L~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~yr~~l~~~~~~~~ip~~~~~l~d~~~~l  380 (840)
T KOG3417|consen  315 QSSPISRLKKTGSYLSSEIKKKLILLTELTSLLDNVQNYRRYLQSCNISPCIPILGVYLLDSLVKL  380 (840)
T ss_pred             ccchhhhhhhhhccccccchhhhhhHHHHhhcchHHHHHHHHhhhcccCccccccccccHHHHHhh
Confidence            999999999999999987777777777777777799999999999988 999999999999 6554

>KOG3417|consensus

Probab=99.41  E-value=2.7e-13  Score=118.94  Aligned_cols=137  Identities=20%  Similarity=0.385  Sum_probs=117.5

Q ss_pred             cchhhcccc--CCCCCCCCchHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhhcCChHHHHHHHHhcc
Q psy11553          4 YELVYHTVG--RHRFQQITANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYCKEYRNINALFAVLMGLS   81 (146)
Q Consensus         4 ~El~~~~w~--~~~~~~~~pni~~~~~~~n~ls~wv~~~IL~~~~~~~Ra~~i~~~I~va~~~~~l~Nf~s~~aI~~aL~   81 (146)
                      .++....|+  +.+.+.+.++-.++...++..+.|+...|..+.....|      ++.++++|..+.||.+++++.++|.
T Consensus       627 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~s------~~~~~~~~~~~~~~~~l~~~~s~l~  700 (840)
T KOG3417|consen  627 EICIPRSLLWAKVQNEEKSKKDLAFTETFNLVSFWSSTIILTQQPAKRS------FIHVAKFCKIMKNFRTLMNINSALA  700 (840)
T ss_pred             chhhhhHHHHhhhhhcccccchHHHHHHHhhhhhhhHHhhhccccccch------hHHHHhhhhhhCchhhhhHHHHHhc
Confidence            344444443  45667788999999999999999999888887776666      9999999999999999999999999


Q ss_pred             hhhhhchHHhhccCCcchHHHHHHHHcccCCCchHHHHHHHHh-cCCCCcccccchhhhhhhhhcC
Q psy11553         82 NVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVS-KLQSPVIPFMPLLLKGKTWSRV  146 (146)
Q Consensus        82 ~~~I~RLk~tw~~l~~~~~~~~~~l~~l~~~~~n~~~yR~~l~-~~~~p~IP~lg~~l~dl~~i~~  146 (146)
                      +.++.|+..+|....++....+..+..+.....|+..||+.+. ...+||+||+|++|+||||+++
T Consensus       701 s~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~cvP~~~~~l~dltf~~~  766 (840)
T KOG3417|consen  701 SSPIHRSTPLWRLEWPKDIREFSALSPLVIDKSNSSTYRRALLSVPEPPCVPFLGVILQDLTFVHT  766 (840)
T ss_pred             cchhhhcchhhcccchhhHHHhhccccchhcccccHHHHHHHhcCCCCCCcCceeEEeecceeecC
Confidence            9999999999999999998888888888877777776666655 5679999999999999999874

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	146
3cf6_E	694	Structure Of Epac2 In Complex With Cyclic-Amp And R		4e-57
2byv_E	999	Structure Of The Camp Responsive Exchange Factor Ep		7e-57
4f7z_A	999	Conformational Dynamics Of Exchange Protein Directl		7e-57
3qxl_A	271	Crystal Structure Of The Cdc25 Domain From Ral-Spec		2e-14
2ije_S	240	Crystal Structure Of The Cdc25 Domain Of Rasgrf1 Le		8e-08
1xdv_A	847	Experimentally Phased Structure Of Human The Son Of		1e-07
3ksy_A	1049	Crystal Structure Of The Histone Domain, Dh-Ph Unit		1e-07
1xd4_A	852	Crystal Structure Of The Dh-Ph-Cat Module Of Son Of		1e-07
1bkd_S	477	Complex Of Human H-Ras With Human Sos-1 Length = 47		1e-07
2ii0_A	490	Crystal Structure Of Catalytic Domain Of Son Of Sev		1e-07
1nvu_S	481	Structural Evidence For Feedback Activation By Rasg		1e-07
1xd2_C	484	Crystal Structure Of A Ternary Ras:sos:ras*gdp Comp		1e-07

>pdb|3CF6|E Chain E, Structure Of Epac2 In Complex With Cyclic-Amp And Rap Length = 694

Iteration: 1
 Score =  216 bits (550), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 93/140 (66%), Positives = 122/140 (87%)
Query: 5   ELVYHTVGRHRFQQITANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYC 64
           EL+YHT GRH F++ TANLD+FLRRFNEIQ+WV+TE+ L + L+KRVQ+L+K IK+AA+C
Sbjct: 478 ELIYHTFGRHNFKKTTANLDLFLRRFNEIQFWVVTEVCLCSQLSKRVQLLKKFIKIAAHC 537
Query: 65  KEYRNINALFAVLMGLSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVS 124
           KEY+N+N+ FA++MGLSNVAVSRL+LTW+KLPSK KK Y E E+L+DPS+NHRAYR   +
Sbjct: 538 KEYKNLNSFFAIVMGLSNVAVSRLALTWEKLPSKFKKFYAEFESLMDPSRNHRAYRLTAA 597
Query: 125 KLQSPVIPFMPLLLKGKTWS 144
           KL+ P+IPFMPLL+K  T++
Sbjct: 598 KLEPPLIPFMPLLIKDMTFT 617

>pdb|2BYV|E Chain E, Structure Of The Camp Responsive Exchange Factor Epac2 In Its Auto-Inhibited State Length = 999

Iteration: 1
 Score =  215 bits (548), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 93/140 (66%), Positives = 122/140 (87%)
Query: 5   ELVYHTVGRHRFQQITANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYC 64
           EL+YHT GRH F++ TANLD+FLRRFNEIQ+WV+TE+ L + L+KRVQ+L+K IK+AA+C
Sbjct: 783 ELIYHTFGRHNFKKTTANLDLFLRRFNEIQFWVVTEVCLCSQLSKRVQLLKKFIKIAAHC 842
Query: 65  KEYRNINALFAVLMGLSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVS 124
           KEY+N+N+ FA++MGLSNVAVSRL+LTW+KLPSK KK Y E E+L+DPS+NHRAYR   +
Sbjct: 843 KEYKNLNSFFAIVMGLSNVAVSRLALTWEKLPSKFKKFYAEFESLMDPSRNHRAYRLTAA 902
Query: 125 KLQSPVIPFMPLLLKGKTWS 144
           KL+ P+IPFMPLL+K  T++
Sbjct: 903 KLEPPLIPFMPLLIKDMTFT 922

>pdb|4F7Z|A Chain A, Conformational Dynamics Of Exchange Protein Directly Activated By Camp Length = 999

Iteration: 1
 Score =  215 bits (547), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 93/140 (66%), Positives = 122/140 (87%)
Query: 5   ELVYHTVGRHRFQQITANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYC 64
           EL+YHT GRH F++ TANLD+FLRRFNEIQ+WV+TE+ L + L+KRVQ+L+K IK+AA+C
Sbjct: 783 ELIYHTFGRHNFKKTTANLDLFLRRFNEIQFWVVTEVCLCSQLSKRVQLLKKFIKIAAHC 842
Query: 65  KEYRNINALFAVLMGLSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVS 124
           KEY+N+N+ FA++MGLSNVAVSRL+LTW+KLPSK KK Y E E+L+DPS+NHRAYR   +
Sbjct: 843 KEYKNLNSFFAIVMGLSNVAVSRLALTWEKLPSKFKKFYAEFESLMDPSRNHRAYRLTAA 902
Query: 125 KLQSPVIPFMPLLLKGKTWS 144
           KL+ P+IPFMPLL+K  T++
Sbjct: 903 KLEPPLIPFMPLLIKDMTFT 922

>pdb|3QXL|A Chain A, Crystal Structure Of The Cdc25 Domain From Ral-Specific Guanine- Nucleotide Exchange Factor Ralgps1a Length = 271

Iteration: 1
 Score = 74.3 bits (181), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 39/121 (32%), Positives = 69/121 (57%), Gaps = 1/121 (0%)
Query: 19  ITANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYCKEYRNINALFAVLM 78
           +  N+  F RRFN++ +WV+ EIL   +L  R +IL   +K+A    E  N+++L +V+ 
Sbjct: 69  LAPNVVAFTRRFNQVSFWVVREILTAQTLKIRAEILSHFVKIAKKLLELNNLHSLMSVVS 128
Query: 79  GLSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVSKLQS-PVIPFMPLL 137
            L +  + RL+ TW  L  K K T+ +L+ L+    N++  R+ +  L+  P IP++ + 
Sbjct: 129 ALQSAPIFRLTKTWALLNRKDKTTFEKLDYLMSKEDNYKRTREYIRSLKMVPSIPYLGIY 188
Query: 138 L 138
           L
Sbjct: 189 L 189

>pdb|2IJE|S Chain S, Crystal Structure Of The Cdc25 Domain Of Rasgrf1 Length = 240

Iteration: 1
 Score = 52.8 bits (125), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 24/111 (21%), Positives = 55/111 (49%)
Query: 28  RRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYCKEYRNINALFAVLMGLSNVAVSR 87
           + FN +  ++ +EI+    ++ R   + K + +A  C+   N NA+  +   ++  A+ R
Sbjct: 51  KHFNHVSNFIASEIIRNEDISARASAIEKWVAVADICRCLHNYNAVLEITSSINRSAIFR 110
Query: 88  LSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVSKLQSPVIPFMPLLL 138
           L  TW K+  ++K    +L+ L+      +  R+++     P +P++ + L
Sbjct: 111 LKKTWLKVSKQTKSLLDKLQKLVSSDGRFKNLRESLRNCDPPCVPYLGMYL 161

>pdb|1XDV|A Chain A, Experimentally Phased Structure Of Human The Son Of Sevenless Protein At 4.1 Ang. Length = 847

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 65/122 (53%), Gaps = 8/122 (6%)
Query: 20  TANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYCKEYRNINALFAVLMG 79
           + NL   +R    +  W    I+   +L +RV ++ ++I++    +E  N N +  V+  
Sbjct: 621 SPNLLKMIRHTTNLTLWFEKCIVETENLEERVAVVSRIIEILQVFQELNNFNGVLEVVSA 680
Query: 80  LSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVSKLQS---PVIPFMPL 136
           +++  V RL  T++++PS+ KK   E   L   S++H  Y++ ++KL+S   P +PF  +
Sbjct: 681 MNSSPVYRLDHTFEQIPSRQKKILEEAHEL---SEDH--YKKYLAKLRSINPPCVPFFGI 735
Query: 137 LL 138
            L
Sbjct: 736 YL 737

>pdb|3KSY|A Chain A, Crystal Structure Of The Histone Domain, Dh-Ph Unit, And Catalytic Unit Of The Ras Activator Son Of Sevenless (Sos) Length = 1049

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 65/122 (53%), Gaps = 8/122 (6%)
Query: 20  TANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYCKEYRNINALFAVLMG 79
           + NL   +R    +  W    I+   +L +RV ++ ++I++    +E  N N +  V+  
Sbjct: 818 SPNLLKMIRHTTNLTLWFEKCIVETENLEERVAVVSRIIEILQVFQELNNFNGVLEVVSA 877
Query: 80  LSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVSKLQS---PVIPFMPL 136
           +++  V RL  T++++PS+ KK   E   L   S++H  Y++ ++KL+S   P +PF  +
Sbjct: 878 MNSSPVYRLDHTFEQIPSRQKKILEEAHEL---SEDH--YKKYLAKLRSINPPCVPFFGI 932
Query: 137 LL 138
            L
Sbjct: 933 YL 934

>pdb|1XD4|A Chain A, Crystal Structure Of The Dh-Ph-Cat Module Of Son Of Sevenless (Sos) Length = 852

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 65/122 (53%), Gaps = 8/122 (6%)
Query: 20  TANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYCKEYRNINALFAVLMG 79
           + NL   +R    +  W    I+   +L +RV ++ ++I++    +E  N N +  V+  
Sbjct: 621 SPNLLKMIRHTTNLTLWFEKCIVETENLEERVAVVSRIIEILQVFQELNNFNGVLEVVSA 680
Query: 80  LSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVSKLQS---PVIPFMPL 136
           +++  V RL  T++++PS+ KK   E   L   S++H  Y++ ++KL+S   P +PF  +
Sbjct: 681 MNSSPVYRLDHTFEQIPSRQKKILEEAHEL---SEDH--YKKYLAKLRSINPPCVPFFGI 735
Query: 137 LL 138
            L
Sbjct: 736 YL 737

>pdb|1BKD|S Chain S, Complex Of Human H-Ras With Human Sos-1 Length = 477

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 65/122 (53%), Gaps = 8/122 (6%)
Query: 20  TANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYCKEYRNINALFAVLMG 79
           + NL   +R    +  W    I+   +L +RV ++ ++I++    +E  N N +  V+  
Sbjct: 251 SPNLLKMIRHTTNLTLWFEKCIVETENLEERVAVVSRIIEILQVFQELNNFNGVLEVVSA 310
Query: 80  LSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVSKLQS---PVIPFMPL 136
           +++  V RL  T++++PS+ KK   E   L   S++H  Y++ ++KL+S   P +PF  +
Sbjct: 311 MNSSPVYRLDHTFEQIPSRQKKILEEAHEL---SEDH--YKKYLAKLRSINPPCVPFFGI 365
Query: 137 LL 138
            L
Sbjct: 366 YL 367

>pdb|2II0|A Chain A, Crystal Structure Of Catalytic Domain Of Son Of Sevenless (Rem-Cdc25) In The Absence Of Ras Length = 490

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 65/122 (53%), Gaps = 8/122 (6%)
Query: 20  TANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYCKEYRNINALFAVLMG 79
           + NL   +R    +  W    I+   +L +RV ++ ++I++    +E  N N +  V+  
Sbjct: 259 SPNLLKMIRHTTNLTLWFEKCIVETENLEERVAVVSRIIEILQVFQELNNFNGVLEVVSA 318
Query: 80  LSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVSKLQS---PVIPFMPL 136
           +++  V RL  T++++PS+ KK   E   L   S++H  Y++ ++KL+S   P +PF  +
Sbjct: 319 MNSSPVYRLDHTFEQIPSRQKKILEEAHEL---SEDH--YKKYLAKLRSINPPCVPFFGI 373
Query: 137 LL 138
            L
Sbjct: 374 YL 375

>pdb|1NVU|S Chain S, Structural Evidence For Feedback Activation By Rasgtp Of The Ras-Specific Nucleotide Exchange Factor Sos Length = 481

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 65/122 (53%), Gaps = 8/122 (6%)
Query: 20  TANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYCKEYRNINALFAVLMG 79
           + NL   +R    +  W    I+   +L +RV ++ ++I++    +E  N N +  V+  
Sbjct: 253 SPNLLKMIRHTTNLTLWFEKCIVETENLEERVAVVSRIIEILQVFQELNNFNGVLEVVSA 312
Query: 80  LSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVSKLQS---PVIPFMPL 136
           +++  V RL  T++++PS+ KK   E   L   S++H  Y++ ++KL+S   P +PF  +
Sbjct: 313 MNSSPVYRLDHTFEQIPSRQKKILEEAHEL---SEDH--YKKYLAKLRSINPPCVPFFGI 367
Query: 137 LL 138
            L
Sbjct: 368 YL 369

>pdb|1XD2|C Chain C, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex Length = 484

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 65/122 (53%), Gaps = 8/122 (6%)
Query: 20  TANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYCKEYRNINALFAVLMG 79
           + NL   +R    +  W    I+   +L +RV ++ ++I++    +E  N N +  V+  
Sbjct: 253 SPNLLKMIRHTTNLTLWFEKCIVETENLEERVAVVSRIIEILQVFQELNNFNGVLEVVSA 312
Query: 80  LSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVSKLQS---PVIPFMPL 136
           +++  V RL  T++++PS+ KK   E   L   S++H  Y++ ++KL+S   P +PF  +
Sbjct: 313 MNSSPVYRLDHTFEQIPSRQKKILEEAHEL---SEDH--YKKYLAKLRSINPPCVPFFGI 367
Query: 137 LL 138
            L
Sbjct: 368 YL 369

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	146
2ije_S	240	Guanine nucleotide-releasing protein; rasgrf1, CDC	4e-51
2byv_E	999	RAP guanine nucleotide exchange factor 4; EPAC2, C	8e-51
3cf6_E	694	RAP guanine nucleotide exchange factor (GEF) 4; EP	2e-50
3qxl_A	271	RAS-specific guanine nucleotide-releasing factor;	6e-50
3ksy_A	1049	SOS-1, SON of sevenless homolog 1; RAS, RAS activa	2e-43
2ii0_A	490	SOS-1, SON of sevenless homolog 1; signaling prote	5e-43
3t6a_A	333	Breast cancer anti-estrogen resistance protein 3;	4e-33
3t6g_A	331	SH2 domain-containing protein 3C; CDC25-homology d	8e-32

>2ije_S Guanine nucleotide-releasing protein; rasgrf1, CDC25 domain, RAS guanine nucleotide releasing FACT specific nucleotide exchange factor; 2.20A {Mus musculus} Length = 240

 Score =  161 bits (410), Expect = 4e-51
 Identities = 26/137 (18%), Positives = 60/137 (43%)

Query: 3   SYELVYHTVGRHRFQQITANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAA 62
             E       +    + T  +    + FN +  ++ +EI+    ++ R   + K + +A 
Sbjct: 26  YEEFFGQGWMKAEKYERTPYIMKTTKHFNHVSNFIASEIIRNEDISARASAIEKWVAVAD 85

Query: 63  YCKEYRNINALFAVLMGLSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQA 122
            C+   N NA+  +   ++  A+ RL  TW K+  ++K    +L+ L+      +  R++
Sbjct: 86  ICRCLHNYNAVLEITSSINRSAIFRLKKTWLKVSKQTKSLLDKLQKLVSSDGRFKNLRES 145

Query: 123 VSKLQSPVIPFMPLLLK 139
           +     P +P++ + L 
Sbjct: 146 LRNCDPPCVPYLGMYLT 162

>2byv_E RAP guanine nucleotide exchange factor 4; EPAC2, CAMP-GEF2, CAMP, cyclic nucleotide, regulation, auto-inhibition, CDC25 homology domain; 2.7A {Mus musculus} Length = 999

 Score =  172 bits (436), Expect = 8e-51
 Identities = 92/139 (66%), Positives = 120/139 (86%)

Query: 1   MSSYELVYHTVGRHRFQQITANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKL 60
           +   EL+YHT GRH F++ TANLD+FLRRFNEIQ+WV+TE+ L + L+KRVQ+L+K IK+
Sbjct: 779 VHELELIYHTFGRHNFKKTTANLDLFLRRFNEIQFWVVTEVCLCSQLSKRVQLLKKFIKI 838

Query: 61  AAYCKEYRNINALFAVLMGLSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYR 120
           AA+CKEY+N+N+ FA++MGLSNVAVSRL+LTW+KLPSK KK Y E E+L+DPS+NHRAYR
Sbjct: 839 AAHCKEYKNLNSFFAIVMGLSNVAVSRLALTWEKLPSKFKKFYAEFESLMDPSRNHRAYR 898

Query: 121 QAVSKLQSPVIPFMPLLLK 139
              +KL+ P+IPFMPLL+K
Sbjct: 899 LTAAKLEPPLIPFMPLLIK 917

>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus} Length = 694

 Score =  169 bits (429), Expect = 2e-50
 Identities = 92/139 (66%), Positives = 120/139 (86%)

Query: 1   MSSYELVYHTVGRHRFQQITANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKL 60
           +   EL+YHT GRH F++ TANLD+FLRRFNEIQ+WV+TE+ L + L+KRVQ+L+K IK+
Sbjct: 474 VHELELIYHTFGRHNFKKTTANLDLFLRRFNEIQFWVVTEVCLCSQLSKRVQLLKKFIKI 533

Query: 61  AAYCKEYRNINALFAVLMGLSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYR 120
           AA+CKEY+N+N+ FA++MGLSNVAVSRL+LTW+KLPSK KK Y E E+L+DPS+NHRAYR
Sbjct: 534 AAHCKEYKNLNSFFAIVMGLSNVAVSRLALTWEKLPSKFKKFYAEFESLMDPSRNHRAYR 593

Query: 121 QAVSKLQSPVIPFMPLLLK 139
              +KL+ P+IPFMPLL+K
Sbjct: 594 LTAAKLEPPLIPFMPLLIK 612

>3qxl_A RAS-specific guanine nucleotide-releasing factor; CDC25 domain homology, guanine-nucleotide exchange factor, S GTPase RAL subfamily; 2.24A {Homo sapiens} Length = 271

 Score =  159 bits (405), Expect = 6e-50
 Identities = 41/138 (29%), Positives = 72/138 (52%), Gaps = 1/138 (0%)

Query: 3   SYELVYHTVGRHRFQQITANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAA 62
             EL      +     +  N+  F RRFN++ +WV+ EIL   +L  R +IL   +K+A 
Sbjct: 53  PEELASCGWSKKEKHSLAPNVVAFTRRFNQVSFWVVREILTAQTLKIRAEILSHFVKIAK 112

Query: 63  YCKEYRNINALFAVLMGLSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQA 122
              E  N+++L +V+  L +  + RL+ TW  L  K K T+ +L+ L+    N++  R+ 
Sbjct: 113 KLLELNNLHSLMSVVSALQSAPIFRLTKTWALLNRKDKTTFEKLDYLMSKEDNYKRTREY 172

Query: 123 VSKLQS-PVIPFMPLLLK 139
           +  L+  P IP++ + L 
Sbjct: 173 IRSLKMVPSIPYLGIYLL 190

>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A Length = 1049

 Score =  151 bits (382), Expect = 2e-43
 Identities = 31/138 (22%), Positives = 63/138 (45%), Gaps = 2/138 (1%)

Query: 2   SSYELVYHTVGRHRFQQITANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLA 61
              ELV     +   +  + NL   +R    +  W    I+   +L +RV ++ ++I++ 
Sbjct: 800 QPSELVGSVWTKEDKEINSPNLLKMIRHTTNLTLWFEKCIVETENLEERVAVVSRIIEIL 859

Query: 62  AYCKEYRNINALFAVLMGLSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQ 121
              +E  N N +  V+  +++  V RL  T++++PS+ KK   E   L     +++ Y  
Sbjct: 860 QVFQELNNFNGVLEVVSAMNSSPVYRLDHTFEQIPSRQKKILEEAHEL--SEDHYKKYLA 917

Query: 122 AVSKLQSPVIPFMPLLLK 139
            +  +  P +PF  + L 
Sbjct: 918 KLRSINPPCVPFFGIYLT 935

>2ii0_A SOS-1, SON of sevenless homolog 1; signaling protein; 2.02A {Homo sapiens} SCOP: a.117.1.1 PDB: 1xd2_C* 1nvv_S* 1nvu_S* 1nvw_S* 1nvx_S* 1bkd_S Length = 490

 Score =  147 bits (371), Expect = 5e-43
 Identities = 31/138 (22%), Positives = 63/138 (45%), Gaps = 2/138 (1%)

Query: 2   SSYELVYHTVGRHRFQQITANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLA 61
              ELV     +   +  + NL   +R    +  W    I+   +L +RV ++ ++I++ 
Sbjct: 241 QPSELVGSVWTKEDKEINSPNLLKMIRHTTNLTLWFEKCIVETENLEERVAVVSRIIEIL 300

Query: 62  AYCKEYRNINALFAVLMGLSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQ 121
              +E  N N +  V+  +++  V RL  T++++PS+ KK   E   L     +++ Y  
Sbjct: 301 QVFQELNNFNGVLEVVSAMNSSPVYRLDHTFEQIPSRQKKILEEAHEL--SEDHYKKYLA 358

Query: 122 AVSKLQSPVIPFMPLLLK 139
            +  +  P +PF  + L 
Sbjct: 359 KLRSINPPCVPFFGIYLT 376

>3t6a_A Breast cancer anti-estrogen resistance protein 3; CDC25-homology domain, GTPase exchange factor, signaling Pro; HET: POG; 2.40A {Homo sapiens} Length = 333

 Score =  118 bits (296), Expect = 4e-33
 Identities = 25/117 (21%), Positives = 48/117 (41%), Gaps = 4/117 (3%)

Query: 26  FLRRFNEIQYWVITEILLVT-SLNKRVQILRKMIKLAAYCKE-YRNINALFAVLMGLSNV 83
            + R N +   +  +IL  T +L  R   L K+I++A   K+   ++ +  A++  L   
Sbjct: 98  IIERHNTMAIGIAVDILGCTGTLEDRAATLSKIIQVAVELKDSMGDLYSFSALMKALEMP 157

Query: 84  AVSRLSLTWDKLPSKSKKTYTELEALIDPSKN--HRAYRQAVSKLQSPVIPFMPLLL 138
            ++RL  TW  L  +  +T    E  + P     H           +  +P +  L+
Sbjct: 158 QITRLEKTWTALRHQYTQTAILYEKQLKPFSKLLHEGRESTCVPPNNVSVPLLMPLV 214

>3t6g_A SH2 domain-containing protein 3C; CDC25-homology domain, GTPase exchange factor, focal-adhesio targeting domain, signaling protein; 2.50A {Homo sapiens} Length = 331

 Score =  114 bits (286), Expect = 8e-32
 Identities = 33/140 (23%), Positives = 53/140 (37%), Gaps = 9/140 (6%)

Query: 2   SSYELVYHTVGRHRFQQITANLDVFLRRFNEIQYWVITEILLVT-SLNKRVQILRKMIKL 60
              EL+    GR             L RF+ +   +  +IL  T S  +R  +L K I+L
Sbjct: 82  WGMELLTLPHGRQLRLD-------LLERFHTMSIMLAVDILGSTGSAEERAALLHKTIQL 134

Query: 61  AAYCKE-YRNINALFAVLMGLSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAY 119
           AA  +    N+ +  AV+  L    +SRL  TW  L  +  +     E  + P       
Sbjct: 135 AAELRGTMGNMFSFAAVMGALDMAQISRLEQTWVTLRQRHTEGAILYEKKLKPFLKSLNE 194

Query: 120 RQAVSKLQSPVIPFMPLLLK 139
            +    L +   P +  L+ 
Sbjct: 195 GKEGPPLSNTTFPHVLPLIT 214

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	146
2ije_S	240	Guanine nucleotide-releasing protein; rasgrf1, CDC	100.0
3qxl_A	271	RAS-specific guanine nucleotide-releasing factor;	100.0
4f7z_A	999	RAP guanine nucleotide exchange factor 4; cyclic n	100.0
3cf6_E	694	RAP guanine nucleotide exchange factor (GEF) 4; EP	100.0
2ii0_A	490	SOS-1, SON of sevenless homolog 1; signaling prote	100.0
3ksy_A	1049	SOS-1, SON of sevenless homolog 1; RAS, RAS activa	100.0
3t6g_A	331	SH2 domain-containing protein 3C; CDC25-homology d	99.75
3t6a_A	333	Breast cancer anti-estrogen resistance protein 3;	99.75

>2ije_S Guanine nucleotide-releasing protein; rasgrf1, CDC25 domain, RAS guanine nucleotide releasing FACT specific nucleotide exchange factor; 2.20A {Mus musculus}

Probab=100.00  E-value=3.2e-48  Score=294.20  Aligned_cols=145  Identities=18%  Similarity=0.357  Sum_probs=141.9

Q ss_pred             CCccchhhccccCCCCCCCCchHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhhcCChHHHHHHHHhc
Q psy11553          1 MSSYELVYHTVGRHRFQQITANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYCKEYRNINALFAVLMGL   80 (146)
Q Consensus         1 ~~p~El~~~~w~~~~~~~~~pni~~~~~~~n~ls~wv~~~IL~~~~~~~Ra~~i~~~I~va~~~~~l~Nf~s~~aI~~aL   80 (146)
                      |+|.||++++|++.+...++|||.+++++||.++.||+++||.+++.++|++++++||+||.+|+++|||||++||++||
T Consensus        24 I~~~E~l~~~w~~~~~~~~~p~i~~~i~~fN~ls~wV~~~Il~~~~~~~Ra~~i~~fI~iA~~~~~l~Nfns~~aI~~gL  103 (240)
T 2ije_S           24 IPYEEFFGQGWMKAEKYERTPYIMKTTKHFNHVSNFIASEIIRNEDISARASAIEKWVAVADICRCLHNYNAVLEITSSI  103 (240)
T ss_dssp             CCGGGGGGGGGGSTTHHHHCHHHHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHH
T ss_pred             CCHHHHhhhHhcCCCCCCCCchHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcCCHhHHHHHHHHh
Confidence            78999999999998877889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhhhhchHHhhccCCcchHHHHHHHHcccCCCchHHHHHHHHhcCCCCcccccchhhhhhhhhc
Q psy11553         81 SNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVSKLQSPVIPFMPLLLKGKTWSR  145 (146)
Q Consensus        81 ~~~~I~RLk~tw~~l~~~~~~~~~~l~~l~~~~~n~~~yR~~l~~~~~p~IP~lg~~l~dl~~i~  145 (146)
                      ++++|+||++||+.++++.++.|++|+.++++++||++||++++++++|||||+|+||+||+|++
T Consensus       104 ~~~~I~RLk~TW~~l~~~~~~~~~~L~~l~~~~~n~~~yR~~l~~~~~p~IPflg~~L~DL~~i~  168 (240)
T 2ije_S          104 NRSAIFRLKKTWLKVSKQTKSLLDKLQKLVSSDGRFKNLRESLRNCDPPCVPYLGMYLTDLVFIE  168 (240)
T ss_dssp             TSHHHHTCHHHHHTSCHHHHHHHHHHHHHTCCHHHHHHHHHHHHTCCSSCBCCHHHHHHHHHHHH
T ss_pred             ccchhhhHHHHHHHhhHHHHHHHHHHHHHHCccchHHHHHHHHHhcCCCccCccchHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999986

>3qxl_A RAS-specific guanine nucleotide-releasing factor; CDC25 domain homology, guanine-nucleotide exchange factor, S GTPase RAL subfamily; 2.24A {Homo sapiens}

Probab=100.00  E-value=1.3e-47  Score=295.26  Aligned_cols=145  Identities=28%  Similarity=0.523  Sum_probs=141.0

Q ss_pred             CCccchhhccccCCCCCCCCchHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhhcCChHHHHHHHHhc
Q psy11553          1 MSSYELVYHTVGRHRFQQITANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYCKEYRNINALFAVLMGL   80 (146)
Q Consensus         1 ~~p~El~~~~w~~~~~~~~~pni~~~~~~~n~ls~wv~~~IL~~~~~~~Ra~~i~~~I~va~~~~~l~Nf~s~~aI~~aL   80 (146)
                      |+|.||+++.|++++....+|||.+++++||.++.||+.+||.+++.++|++++++||+||.+|+++|||||++||++||
T Consensus        51 I~p~E~l~~~w~k~~~~~~~pnl~~~i~~fN~ls~wV~~~IL~~~~~~~Ra~~i~kfI~IA~~c~~l~Nfnsl~AIisgL  130 (271)
T 3qxl_A           51 IQPEELASCGWSKKEKHSLAPNVVAFTRRFNQVSFWVVREILTAQTLKIRAEILSHFVKIAKKLLELNNLHSLMSVVSAL  130 (271)
T ss_dssp             CCHHHHHHTCTTSTTHHHHCHHHHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHH
T ss_pred             CCHHHHHHhHhccCCcCCCCCcHHHHHHHHhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHc
Confidence            78999999999988777789999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhhhhchHHhhccCCcchHHHHHHHHcccCCCchHHHHHHHHhcCC-CCcccccchhhhhhhhhc
Q psy11553         81 SNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVSKLQ-SPVIPFMPLLLKGKTWSR  145 (146)
Q Consensus        81 ~~~~I~RLk~tw~~l~~~~~~~~~~l~~l~~~~~n~~~yR~~l~~~~-~p~IP~lg~~l~dl~~i~  145 (146)
                      ++++|+||++||+.|+++.++.|++|+.++++++||++||+.+++.. +|||||+|+||+||+|++
T Consensus       131 ~s~~I~RLk~TW~~l~~k~~~~~~~L~~l~~~~~N~~~yR~~l~~~~~~p~IPflg~~L~DL~fi~  196 (271)
T 3qxl_A          131 QSAPIFRLTKTWALLNRKDKTTFEKLDYLMSKEDNYKRTREYIRSLKMVPSIPYLGIYLLDLIYID  196 (271)
T ss_dssp             TSHHHHTCHHHHHTSCHHHHHHHHHHHHHTCCHHHHHHHHHHHHTTTTSCCBCCHHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHCCHHHHHHHHHHHHHcCcchhHHHHHHHHHhcCCCCCCCchHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999875 899999999999999986

>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E

Probab=100.00  E-value=2.9e-44  Score=315.42  Aligned_cols=145  Identities=64%  Similarity=1.119  Sum_probs=142.8

Q ss_pred             CCccchhhccccCCCCCCCCchHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhhcCChHHHHHHHHhc
Q psy11553          1 MSSYELVYHTVGRHRFQQITANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYCKEYRNINALFAVLMGL   80 (146)
Q Consensus         1 ~~p~El~~~~w~~~~~~~~~pni~~~~~~~n~ls~wv~~~IL~~~~~~~Ra~~i~~~I~va~~~~~l~Nf~s~~aI~~aL   80 (146)
                      |+|.||++++|++++....+|||.+++++||.+++||+.+||.++++++|+++|++||+||.+|+++|||||++||++||
T Consensus       779 i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~wv~~~il~~~~~~~R~~~~~~~i~ia~~~~~l~Nf~~~~ai~~~l  858 (999)
T 4f7z_A          779 VHELELIYHTFGRHNFKKTTANLDLFLRRFNEIQFWVVTEVCLCSQLSKRVQLLKKFIKIAAHCKEYKNLNSFFAIVMGL  858 (999)
T ss_dssp             CCHHHHHHHHHCHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHT
T ss_pred             CCHHHHHHhHhhcCCCCCCChHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHc
Confidence            78999999999998888999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhhhhchHHhhccCCcchHHHHHHHHcccCCCchHHHHHHHHhcCCCCcccccchhhhhhhhhc
Q psy11553         81 SNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVSKLQSPVIPFMPLLLKGKTWSR  145 (146)
Q Consensus        81 ~~~~I~RLk~tw~~l~~~~~~~~~~l~~l~~~~~n~~~yR~~l~~~~~p~IP~lg~~l~dl~~i~  145 (146)
                      ++++|+||++||+.||++.++.|++|+.++++++||++||.+++++++|||||+|+||+||+|+|
T Consensus       859 ~~~~i~RL~~tw~~~~~~~~~~~~~l~~l~~~~~n~~~yr~~l~~~~~p~iP~~g~~l~dl~~~~  923 (999)
T 4f7z_A          859 SNVAVSRLALTWEKLPSKFKKFYAEFESLMDPSRNHRAYRLTAAKLEPPLIPFMPLLIKDMTFTH  923 (999)
T ss_dssp             TSHHHHTCHHHHHTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHTCCSSCBCCHHHHHHHHHHHH
T ss_pred             CCchhhhHHHHHHHCCHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCeeceehHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999986

>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus}

Probab=100.00  E-value=4.9e-43  Score=298.64  Aligned_cols=145  Identities=64%  Similarity=1.119  Sum_probs=142.3

Q ss_pred             CCccchhhccccCCCCCCCCchHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhhcCChHHHHHHHHhc
Q psy11553          1 MSSYELVYHTVGRHRFQQITANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYCKEYRNINALFAVLMGL   80 (146)
Q Consensus         1 ~~p~El~~~~w~~~~~~~~~pni~~~~~~~n~ls~wv~~~IL~~~~~~~Ra~~i~~~I~va~~~~~l~Nf~s~~aI~~aL   80 (146)
                      |+|.||++++|++.+....+|||.+++++||.++.||+++||.++++++|++++++||+||.+|+++|||||++||++||
T Consensus       474 I~~~E~l~~~~~~~~~~~~~pni~~~i~~fN~ls~wV~~~Il~~~~~~~Ra~~i~~fI~iA~~c~~l~Nfnsl~aIisgL  553 (694)
T 3cf6_E          474 VHELELIYHTFGRHNFKKTTANLDLFLRRFNEIQFWVVTEVCLCSQLSKRVQLLKKFIKIAAHCKEYKNLNSFFAIVMGL  553 (694)
T ss_dssp             SCHHHHHHHHHCGGGTTCCCHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHH
T ss_pred             CCHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHh
Confidence            78999999999998888899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhhhhchHHhhccCCcchHHHHHHHHcccCCCchHHHHHHHHhcCCCCcccccchhhhhhhhhc
Q psy11553         81 SNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVSKLQSPVIPFMPLLLKGKTWSR  145 (146)
Q Consensus        81 ~~~~I~RLk~tw~~l~~~~~~~~~~l~~l~~~~~n~~~yR~~l~~~~~p~IP~lg~~l~dl~~i~  145 (146)
                      ++++|+||++||+.|+++.++.|++|+.++++++||++||.++++.++|||||+|+||+||+|++
T Consensus       554 ~s~~I~RLk~TW~~l~~~~~~~~~~L~~l~~~~~N~~~yR~~l~~~~~p~IPflg~~L~DL~fi~  618 (694)
T 3cf6_E          554 SNVAVSRLALTWEKLPSKFKKFYAEFESLMDPSRNHRAYRLTAAKLEPPLIPFMPLLIKDMTFTH  618 (694)
T ss_dssp             TSHHHHTCHHHHHTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSCSSCBCCHHHHHHHHHHHH
T ss_pred             CCcchhhhHHHHHHCCHHHHHHHHHHHHHhCccccHHHHHHHHHhcCCCCcccHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999986

>2ii0_A SOS-1, SON of sevenless homolog 1; signaling protein; 2.02A {Homo sapiens} SCOP: a.117.1.1 PDB: 1xd2_C* 1nvv_S* 1nvu_S* 1nvw_S* 1nvx_S* 1bkd_S

Probab=100.00  E-value=5.8e-42  Score=282.36  Aligned_cols=143  Identities=22%  Similarity=0.394  Sum_probs=137.6

Q ss_pred             CCccchhhccccCCCCCCCCchHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhhcCChHHHHHHHHhc
Q psy11553          1 MSSYELVYHTVGRHRFQQITANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYCKEYRNINALFAVLMGL   80 (146)
Q Consensus         1 ~~p~El~~~~w~~~~~~~~~pni~~~~~~~n~ls~wv~~~IL~~~~~~~Ra~~i~~~I~va~~~~~l~Nf~s~~aI~~aL   80 (146)
                      |+|.||+++.|++.+....+||+.+++++||.++.||+.+||.+++.++|+++|++||+||.+|+++|||||++||++||
T Consensus       240 I~~~E~l~~~w~~~~~~~~~pnl~~~i~~~n~ls~wV~~~Il~~~~~~~Ra~~i~kfI~iA~~c~~l~Nfnsl~AIisgL  319 (490)
T 2ii0_A          240 VQPSELVGSVWTKEDKEINSPNLLKMIRHTTNLTLWFEKCIVETENLEERVAVVSRIIEILQVFQELNNFNGVLEVVSAM  319 (490)
T ss_dssp             CCGGGTGGGGGGSTTHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHH
T ss_pred             CCHHHHHHHHhcCCCcCCCCccHHHHHHHHhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHh
Confidence            78999999999998877789999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhhhhchHHhhccCCcchHHHHHHHHcccCCCchHHHHHHHHhcCCCCcccccchhhhhhhhhc
Q psy11553         81 SNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVSKLQSPVIPFMPLLLKGKTWSR  145 (146)
Q Consensus        81 ~~~~I~RLk~tw~~l~~~~~~~~~~l~~l~~~~~n~~~yR~~l~~~~~p~IP~lg~~l~dl~~i~  145 (146)
                      ++++|+||++||+.|+++.++.|++|..+.  ++||++||..+++.++|||||+|+||+||+|++
T Consensus       320 ~s~~I~RLk~TW~~v~~~~~~~~~~l~~l~--~~n~~~yR~~l~~~~~p~IPflg~~L~DL~~i~  382 (490)
T 2ii0_A          320 NSSPVYRLDHTFEQIPSRQKKILEEAHELS--EDHYKKYLAKLRSINPPCVPFFGIYLTNILKTE  382 (490)
T ss_dssp             TSHHHHTCHHHHHHSCHHHHHHHHHHHHHH--HHHHHHHHHHHHTCCSSCBCCCHHHHHHHHHHH
T ss_pred             ccchhhhHHHHHHHCCHHHHHHHHHHHHhc--hHHHHHHHHHHhccCCCcccCcHHHHHHHHHHH
Confidence            999999999999999999999999998873  589999999999999999999999999999986

>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A

Probab=100.00  E-value=1.1e-39  Score=287.80  Aligned_cols=143  Identities=22%  Similarity=0.399  Sum_probs=138.5

Q ss_pred             CCccchhhccccCCCCCCCCchHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhhcCChHHHHHHHHhc
Q psy11553          1 MSSYELVYHTVGRHRFQQITANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYCKEYRNINALFAVLMGL   80 (146)
Q Consensus         1 ~~p~El~~~~w~~~~~~~~~pni~~~~~~~n~ls~wv~~~IL~~~~~~~Ra~~i~~~I~va~~~~~l~Nf~s~~aI~~aL   80 (146)
                      |+|.||+++.|++.+....+||+.+++.+||.+++||+.+||.++++++|+++|++||+||.+|+++|||||++||++||
T Consensus       799 I~p~E~l~~~w~~~~~~~~~pn~~~~i~~~n~~s~wV~~~Il~~~~~~~Ra~~i~~fI~iA~~c~~l~Nfnsl~aIisgL  878 (1049)
T 3ksy_A          799 VQPSELVGSVWTKEDKEINSPNLLKMIRHTTNLTLWFEKCIVETENLEERVAVVSRIIEILQVFQELNNFNGVLEVVSAM  878 (1049)
T ss_dssp             CCGGGGSSSTTTSSCHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHhcCCCcccCCchHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHc
Confidence            78999999999998877889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhhhhchHHhhccCCcchHHHHHHHHcccCCCchHHHHHHHHhcCCCCcccccchhhhhhhhhc
Q psy11553         81 SNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVSKLQSPVIPFMPLLLKGKTWSR  145 (146)
Q Consensus        81 ~~~~I~RLk~tw~~l~~~~~~~~~~l~~l~~~~~n~~~yR~~l~~~~~p~IP~lg~~l~dl~~i~  145 (146)
                      ++++|+||++||+.|+++.++.|++|..+  +++||++||..+++.++|||||+|+||+||+|++
T Consensus       879 ~s~~I~RLk~TW~~v~~~~~~~~~~l~~l--~~~n~~~yR~~l~~~~~p~IPflg~~L~DL~~i~  941 (1049)
T 3ksy_A          879 NSSPVYRLDHTFEQIPSRQKKILEEAHEL--SEDHYKKYLAKLRSINPPCVPFFGIYLTNILKTE  941 (1049)
T ss_dssp             HSHHHHTCTTTTTSSCHHHHHHHHHHHTT--THHHHHHHHHHHTTCCSSCCCCTHHHHHHHHHHH
T ss_pred             ccchhHhHHHHHHHCCHHHHHHHHHHHhh--chHHHHHHHHHHhhCCCCccceeHHHHHHHHHHH
Confidence            99999999999999999999999999998  5689999999999999999999999999999986

>3t6g_A SH2 domain-containing protein 3C; CDC25-homology domain, GTPase exchange factor, focal-adhesio targeting domain, signaling protein; 2.50A {Homo sapiens}

Probab=99.75  E-value=2.8e-18  Score=132.86  Aligned_cols=110  Identities=25%  Similarity=0.371  Sum_probs=94.3

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCC-ChhHHHHHHHHHHHHHHHhh-hcCChHHHHHHHHhcchhhhhchHHhhccCCcchHH
Q psy11553         24 DVFLRRFNEIQYWVITEILLVT-SLNKRVQILRKMIKLAAYCK-EYRNINALFAVLMGLSNVAVSRLSLTWDKLPSKSKK  101 (146)
Q Consensus        24 ~~~~~~~n~ls~wv~~~IL~~~-~~~~Ra~~i~~~I~va~~~~-~l~Nf~s~~aI~~aL~~~~I~RLk~tw~~l~~~~~~  101 (146)
                      ..+++++|.+..||+.+||.|. +.++|+.++.+||+||.+|. ++||+++++||+.||+++.|.||++||..+++++.+
T Consensus        97 ldlleR~~~l~~~va~~IL~c~g~~~~Ra~lL~k~IqiA~~Lk~~~gnL~sF~AIm~aL~~pqVsRLe~TW~~Lr~k~te  176 (331)
T 3t6g_A           97 LDLLERFHTMSIMLAVDILGSTGSAEERAALLHKTIQLAAELRGTMGNMFSFAAVMGALDMAQISRLEQTWVTLRQRHTE  176 (331)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCCSCHHHHHHHHHHHHHHHHHHHHTSCBHHHHHHHHHHHTSHHHHTCHHHHHHHHHHCHH
T ss_pred             HHHHHHhcchHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhhhccHHHHHHHHHHHHhhhhhhH
Confidence            4689999999999999999997 89999999999999999999 999999999999999999999999999999999998


Q ss_pred             HHHHHHcccCCCchHHHHHHHHhcCC------CCcccccchhhh
Q psy11553        102 TYTELEALIDPSKNHRAYRQAVSKLQ------SPVIPFMPLLLK  139 (146)
Q Consensus       102 ~~~~l~~l~~~~~n~~~yR~~l~~~~------~p~IP~lg~~l~  139 (146)
                      .+-.+++.+.|      ..+.+.++.      .-|||++..+++
T Consensus       177 ~Ai~yEk~LkP------~~k~lneg~~~~~~~~~~~Phl~Pl~~  214 (331)
T 3t6g_A          177 GAILYEKKLKP------FLKSLNEGKEGPPLSNTTFPHVLPLIT  214 (331)
T ss_dssp             HHHHHHHTHHH------HHHHHHTTCCCSCGGGCSBCCCHHHHH
T ss_pred             HHHHHHHHhhH------HHHHHhCCCCCCCCCCCccchHHHHHH
Confidence            87666665544      334444443      248898876654

>3t6a_A Breast cancer anti-estrogen resistance protein 3; CDC25-homology domain, GTPase exchange factor, signaling Pro; HET: POG; 2.40A {Homo sapiens}

Probab=99.75  E-value=1.4e-18  Score=134.58  Aligned_cols=109  Identities=22%  Similarity=0.345  Sum_probs=91.6

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCC-hhHHHHHHHHHHHHHHHhh-hcCChHHHHHHHHhcchhhhhchHHhhccCCcchHH
Q psy11553         24 DVFLRRFNEIQYWVITEILLVTS-LNKRVQILRKMIKLAAYCK-EYRNINALFAVLMGLSNVAVSRLSLTWDKLPSKSKK  101 (146)
Q Consensus        24 ~~~~~~~n~ls~wv~~~IL~~~~-~~~Ra~~i~~~I~va~~~~-~l~Nf~s~~aI~~aL~~~~I~RLk~tw~~l~~~~~~  101 (146)
                      ..+++++|.++.||+.+||.|.. .++|+.++.+||++|.+|. ++||++|++||+.||+++.|+||++||..+++++++
T Consensus        96 ldlleR~~~l~~wva~~IL~C~~~~~eR~~lL~k~IqiA~~Lk~~~gNL~sf~AVm~aL~~pqVSRL~~TW~~Lr~k~te  175 (333)
T 3t6a_A           96 LDIIERHNTMAIGIAVDILGCTGTLEDRAATLSKIIQVAVELKDSMGDLYSFSALMKALEMPQITRLEKTWTALRHQYTQ  175 (333)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSCCSHHHHHHHHHHHHHHHHHHHHTTCBHHHHHHHHHHHHSHHHHTCHHHHHHHHHHSHH
T ss_pred             hHHHHHhcccHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHhhhccHHHHHHHHHHHHhhHHhhH
Confidence            36899999999999999999865 7899999999999999999 899999999999999999999999999999999998


Q ss_pred             HHHHHHcccCCCchHHHHHHHHhcCC--------CCcccccchhh
Q psy11553        102 TYTELEALIDPSKNHRAYRQAVSKLQ--------SPVIPFMPLLL  138 (146)
Q Consensus       102 ~~~~l~~l~~~~~n~~~yR~~l~~~~--------~p~IP~lg~~l  138 (146)
                      .+-.+++.++|      ..+.+.+..        .-|+|++-.++
T Consensus       176 ~ai~yEk~LkP------~~k~lneG~~~~~~~~~~~t~Phv~Pl~  214 (333)
T 3t6a_A          176 TAILYEKQLKP------FSKLLHEGRESTCVPPNNVSVPLLMPLV  214 (333)
T ss_dssp             HHHHHHHTHHH------HHHHHHTTCGGGSCCTTCCSBCCCHHHH
T ss_pred             HHHHHHHHhhH------HHHHhhCCCCCCCCCCCCccchhHHHHH
Confidence            76666665544      333333321        24788886554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	146
d1nvus_	481	a.117.1.1 (S:) Son of sevenless protein homolog 1	2e-33

>d1nvus_ a.117.1.1 (S:) Son of sevenless protein homolog 1 (sos-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 481

class: All alpha proteins
fold: Ras GEF
superfamily: Ras GEF
family: Ras GEF
domain: Son of sevenless protein homolog 1 (sos-1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  120 bits (301), Expect = 2e-33
 Identities = 31/139 (22%), Positives = 64/139 (46%), Gaps = 2/139 (1%)

Query: 1   MSSYELVYHTVGRHRFQQITANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKL 60
           +   ELV     +   +  + NL   +R    +  W    I+   +L +RV ++ ++I++
Sbjct: 234 VQPSELVGSVWTKEDKEINSPNLLKMIRHTTNLTLWFEKCIVETENLEERVAVVSRIIEI 293

Query: 61  AAYCKEYRNINALFAVLMGLSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYR 120
               +E  N N +  V+  +++  V RL  T++++PS+ KK   E   L     +++ Y 
Sbjct: 294 LQVFQELNNFNGVLEVVSAMNSSPVYRLDHTFEQIPSRQKKILEEAHEL--SEDHYKKYL 351

Query: 121 QAVSKLQSPVIPFMPLLLK 139
             +  +  P +PF  + L 
Sbjct: 352 AKLRSINPPCVPFFGIYLT 370

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	146
d1nvus_	481	Son of sevenless protein homolog 1 (sos-1) {Human	100.0

>d1nvus_ a.117.1.1 (S:) Son of sevenless protein homolog 1 (sos-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Ras GEF
superfamily: Ras GEF
family: Ras GEF
domain: Son of sevenless protein homolog 1 (sos-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.7e-41  Score=274.20  Aligned_cols=143  Identities=22%  Similarity=0.400  Sum_probs=139.0

Q ss_pred             CCccchhhccccCCCCCCCCchHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhhcCChHHHHHHHHhc
Q psy11553          1 MSSYELVYHTVGRHRFQQITANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYCKEYRNINALFAVLMGL   80 (146)
Q Consensus         1 ~~p~El~~~~w~~~~~~~~~pni~~~~~~~n~ls~wv~~~IL~~~~~~~Ra~~i~~~I~va~~~~~l~Nf~s~~aI~~aL   80 (146)
                      |+|.||++++|++.+....+|||.+++++||.+++||+.+||.++++++|++++++||+||++|+++||||+++||++||
T Consensus       234 I~~~E~l~~~~~~~~~~~~~pni~~~~~~~n~ls~wv~~~Il~~~~~~~R~~~i~~fI~ia~~~~~l~Nf~s~~aI~~~L  313 (481)
T d1nvus_         234 VQPSELVGSVWTKEDKEINSPNLLKMIRHTTNLTLWFEKCIVETENLEERVAVVSRIIEILQVFQELNNFNGVLEVVSAM  313 (481)
T ss_dssp             CCGGGTGGGGGGSTTHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHcccCCCCCCCcHHHHHHHHhHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            78999999999999888899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhhhhchHHhhccCCcchHHHHHHHHcccCCCchHHHHHHHHhcCCCCcccccchhhhhhhhhc
Q psy11553         81 SNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVSKLQSPVIPFMPLLLKGKTWSR  145 (146)
Q Consensus        81 ~~~~I~RLk~tw~~l~~~~~~~~~~l~~l~~~~~n~~~yR~~l~~~~~p~IP~lg~~l~dl~~i~  145 (146)
                      ++++|.||++||+.++++.++.|++|+.+++  +||++||..+++.++|||||+|+||+||+|++
T Consensus       314 ~~~~I~RL~~tw~~l~~~~~~~~~~l~~l~~--~n~~~yr~~l~~~~~p~IP~lg~~l~Dl~~~~  376 (481)
T d1nvus_         314 NSSPVYRLDHTFEQIPSRQKKILEEAHELSE--DHYKKYLAKLRSINPPCVPFFGIYLTNILKTE  376 (481)
T ss_dssp             TSHHHHTCHHHHHTSCHHHHHHHHHHHHHHH--HHHHHHHHHHHHSCSCCBCCSHHHHHHHHHHH
T ss_pred             ccCcchHHHHHHHhCCHHHHHHHHHHHHhcc--hhHHHHHHHHhcCCCCeEeeeccHHHHHHHHH
Confidence            9999999999999999999999999999964  89999999999999999999999999999985