Psyllid ID: psy1156

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-
Protein Sequence
MVVRKTPTRSSQYYTSHIRQSSSTKQKALLAEKRNPLLEKVKNTKLTCFKANNIYSNVNNGIIDSTSLTDKSISVDCLNESITESDTSTLFKRSKSNDNVIYSHTSNDENEWGPSNAKDNQDQWPSRDATGDKNTCIDRIKAISDKYFKSNKIIVKLYSNNKKSTTRRQRSFSFGALPGLDNLKDNPLYNEEEDYDDSDSGIVNSSTNSSVVDDHYDFRATRKENCRRLSFDRTQIINKCLRTSCNDSFSSLQTCSSPQSLLLPTLECSASKCDSPTISTRSTVTSNSEKPSFLDKFRNSPSKSENGQLPNFQIQSYGYDSPILSSRSQNSSMISEKYNLDVPNIFNRNSGSQSLLEIPAYQNSSDYHSMMEISELSSENSEDSQEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISRTSLKKSNAENEYNESHSREKKSKETRFSLDKQNDFESSNEQDKNNQKRLFQKNCHSINNKLLRKAIISTGSISGDEEETILTSTNFCTLPRRPRSAICTFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKNGSISLHICRRLKSKKT
Secondary Structure (PSIPRED)
ccccccccccccEEEcccccccHHHHHHHHHHHHcHHHHHcccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccHHHHHccccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEccccccccEEEEccccccccccccEEEEEEccccHHHHccccccccEEEEEccEEcccccHHHHHHHHHHccccEEEEEEEccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEccccccccEEEEcccccccccccEEEEEEccccHHHHccccccccEEEEEccEEcccccHHHHHHHHHccccccEEEEEEEEcccccc
Secondary Structure Prediction (SSPRO)
cEEEEcccccccccccHHcHHHHHHHHHHHHHHHccHHHHHcccEEEEEccccccccccccccccHHHHcccccHHHHHHcccHHcHHHHHHHHcccccEEEccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcHHHHHHHEcccccccccccccccccccccHHHHcccccccHHccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccHHHHHHHccccccccccccccccccccccccccccccHHHcccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEccccccEEEEEccccccccccccEEEEEEccccccccccccccccEEEEEcccccccccHHHHHHHHHHccccEEEEEEEccccccccccccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEcccccccEEEEEccccccccccEEEEEEEccccHHHHHcccccccEEEEEccEEcccccHHHHHHHHHHccccEEEEEEEcccccccc
Coil and Loop (DISEMBL)
mvvrktptrssqyytshirqssSTKQKALLAEKRNpllekvkntkltcfkanniysnvnngiidstsltdksisvdclnesitesdtstlfkrsksndnviyshtsndenewgpsnakdnqdqwpsrdatgdknTCIDRIKAISDKYFKSNKIIVKLYSnnkksttrrqrsfsfgalpgldnlkdnplyneeedyddsdsgivnsstnssvvddhydfratRKENCRRLSFDRTQIINKCLrtscndsfsslqtcsspqslllptlecsaskcdsptistrstvtsnsekpsfldkfrnspsksengqlpnfqiqsygydspilssrsqnssmisekynldvpnifnrnsgsqslleipayqnssdyhSMMEISelssensedsqegqTMVRVNRRDFNEELGIYIAKIknssegniGGFVVAHIVsgglaekegcLELGDEIISVNGQRLRGLTMTQAKsiissgplnmDLLISRTslkksnaeneyneshsrekksketrfsldkqndfessneqdknnqKRLFQKNCHSINNKLLRKAIIStgsisgdeeetiltstnfctlprrprsaictfhtivfekgpgkkglgftivggkdsprgAIGIFIKSIldngqaaedgrlkegDEILAIngqvchdlTHLEAISLFKTIKNGSISLHICRRLKSKKT
Flexible Loop (DISEMBL)
mvvrktptrssqyytshirqssstkqKALLAEkrnpllekvkntkltcfkanniysnvnnGIIDSTSLTDKSISVDCLNEsitesdtstlfkrsksndNVIYSHtsndenewgpsnakdnqdqwpsrdatgdkntCIDRIKAisdkyfksnkIIVKLysnnkksttrrqrsfsfgalpgldnlKDNPLYNEEedyddsdsgivnsstnssvvddhydfratrkencrrlsfDRTQIINKCLRTSCNDSFSSLQTCSSPQSLLLPTLECSASKCDsptistrstvtsnsekpsfLDKFRNSPSKSENGQLPNFQIQSYGYDSPILSSRSQNSSMISEKYNLDVPNIFNRNSGSQSLLEIPAYQNSSDYHSMMEISELssensedsqegqtMVRVNRRDFNEELGIYIAKiknssegniGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKsiissgplnmDLLISRTSlkksnaeneyneshsrekksketrfsldkqndfessneqdknnqkrlfQKNCHSINNKLLRKAIISTgsisgdeeetILTStnfctlprrprSAICTFHTivfekgpgkkgLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLfktikngsislhicrrlkskkt
Low Complexity Region (SEG)
MVVRKTPTRSSQYYTSHIRQSSSTKQKALLAEKRNPLLEKVKNTKLTCFKANNIYSNVNNGIIDSTSLTDKSISVDCLNESITESDTSTLFKRSKSNDNVIYSHTSNDENEWGPSNAKDNQDQWPSRDATGDKNTCIDRIKAISDKYFKSNKIIVKLYSNNKKSTTRRQRSFSFGALPGLDNLKDNPLYNeeedyddsdsgivnsstnssvvddHYDFRATRKENCRRLSFDRTQIINKCLRTSCNDSFSSLQTCSSPQSLLLPTLECSASKCDSPTISTRSTVTSNSEKPSFLDKFRNSPSKSENGQLPNFQIQSYGYDSPILSSRSQNSSMISEKYNLDVPNIFNRNSGSQSLLEIPAYQNSSDYHSMMEISELSSENSEDSQEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISRTSLKKSNAENEYNESHSREKKSKETRFSLDKQNDFESSNEQDKNNQKRLFQKNCHSINNKLLRKAIISTGSISGDEEETILTSTNFCTLPRRPRSAICTFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKNGSISLHICRRLKSKKT
Disordered region (IsUnstruct)
************************************LLEKVKNTKLTCFKANNIYSNVNNGIIDSTSLTDKSISVDCLN*******************************************************TCIDRIKAISDKYFKSNKIIVKLYS******************************************************DHYDFRATRKENCRRLSFDRTQIINKCLRTSCNDSFS*************************************************************************************************************************************************RDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIIS***L*MDLL******************************************************KNCHSINNKLLRKAIISTGSISGDEEETILTSTNFCTLPRRPRSAICTFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKNGSISLHICRR******
Disordered Region (DISOPRED)
****************************************V***************************************************************************************************************************************************************************************************************************************************************************************************************************************************************VNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLIS*****************************************************************************************************HTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKNGSISLH***R******
Disordered Region (DISEMBL)
**************************KALLAEKRNPLLEKVKNTKLTCFKANNIYSNVNNGIIDSTSLTDKSISVDCLNESITESDTSTLFKRSKSNDNVIYSHTSNDENEWGPSNAKDNQDQWPSRDATGDKNTCIDRIKAISDKYFKSNKIIVKLYSNNKKSTTRRQRSFSFGALPGLDNLKDNPLYNEEEDYDDSDSGIVNSSTNSSVVDDHYDFRATRKENCRRLSFDRTQIINKCLRTSCNDSFSSLQTCSSPQSLLLPTLECSA*********************SFLDKFRNSPSKSENGQLPNFQIQSYGYDSPILSSRSQNSSMISEKYNLDVPNIFNRNSGSQSLLEIPAYQNSSDYHSMME*****************MVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISRTSLKK*****************************************KRLFQKNCHSINNKLLRKAIISTGSISGDEEETILTSTNFCTLPRRPRSAICTFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKNGSISLHICRRLKSKKT
Disordered Region (DISPRO)
***************S*IRQSSSTKQKALLAEKRNPLLEKVKNTKLTCFKAN*********************SVDCLNESITESDTSTLFKRSKSN**************************WPSRD**GDKNTCIDRIKAISDKYFKSNKIIVKLYSNNK******QRSFSFGALPGLDNLKDNPLYN****************************************************************************************************************************************************************************************************GQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISRTS******************************NDFE************************************************************ICTFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKNGSISLHICRRL*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVVRKTPTRSSQYYTSHIRQSSSTKQKALLAEKRNPLLEKVKNTKLTCFKANNIYSNVNNGIIDSTSLTDKSISVDCLNESITESDTSTLFKRSKSNDNVIYSHTSNDENEWGPSNAKDNQDQWPSRDATGDKNTCIDRIKAISDKYFKSNKIIVKLYSNNKKSTTRRQRSFSFGALPGLDNLKDNPLYNEEEDYDDSDSGIVNSSTNSSVVDDHYDFRATRKENCRRLSFDRTQIINKCLRTSCNDSFSSLQTCSSPQSLLLPTLECSASKCDSPTISTRSTVTSNSEKPSFLDKFRNSPSKSENGQLPNFQIQSYGYDSPILSSRSQNSSMISEKYNLDVPNIFNRNSGSQSLLEIPAYQNSSDYHSMMEISELSSENSEDSQEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISRTSLKKSNAENEYNESHSREKKSKETRFSLDKQNDFESSNEQDKNNQKRLFQKNCHSINNKLLRKAIISTGSISGDEEETILTSTNFCTLPRRPRSAICTFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKNGSISLHICRRLKSKKT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	671	2.2.26 [Sep-21-2011]
Q9QZR8	2766	PDZ domain-containing pro	yes	N/A	0.383	0.092	0.329	4e-25
O15018	2839	PDZ domain-containing pro	yes	N/A	0.143	0.033	0.505	7e-19
O75970	2070	Multiple PDZ domain prote	no	N/A	0.298	0.096	0.276	6e-17
Q14005	1332	Pro-interleukin-16 OS=Hom	no	N/A	0.129	0.065	0.545	1e-16
Q8VBX6	2055	Multiple PDZ domain prote	no	N/A	0.122	0.039	0.482	1e-16
Q68DX3	1309	FERM and PDZ domain-conta	no	N/A	0.372	0.190	0.264	3e-16
O54824	1322	Pro-interleukin-16 OS=Mus	no	N/A	0.114	0.058	0.589	2e-15
O55164	2054	Multiple PDZ domain prote	no	N/A	0.122	0.039	0.482	5e-15
Q8NI35	1801	InaD-like protein OS=Homo	no	N/A	0.356	0.132	0.278	3e-12
Q3T0C9	145	Synaptojanin-2-binding pr	no	N/A	0.137	0.634	0.432	6e-12

>sp|Q9QZR8|PDZD2_RAT PDZ domain-containing protein 2 OS=Rattus norvegicus GN=Pdzd2 PE=1 SV=1

 Score =  117 bits (292), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 96/291 (32%), Positives = 144/291 (49%), Gaps = 34/291 (11%)

Query: 402 LGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKS 461
           LGI ++  + S   +    VV  +  GG A ++G L LGDE++ +NG  L GL+  +A +
Sbjct: 344 LGIQVSGGRGSKR-SPHAIVVTQVKEGGAAHRDGRLSLGDELLVINGHLLVGLSHEEAVA 402

Query: 462 IISSGPLNMDLLISRTSLKKSNAENEYNESHSREKKSK-------------ETRFS--LD 506
           I+ S    + L+++    K   +E   +   S E K               ++R S  + 
Sbjct: 403 ILRSATGMVQLVVAS---KMPGSEESQDVGSSEESKGNLESPKQGNCKTKLKSRLSGGVH 459

Query: 507 KQNDFESSNE-QDKNNQKRLFQKNCHSINNKL-LRKAIISTGSISGDEEETI-------L 557
           +    E  NE   +N   R+          K  L + + STG+    +E  I       L
Sbjct: 460 RLESVEEYNELMVRNGDPRIRMLEVSRDGRKHSLPQLLDSTGT---SQEYHIVKKSTRSL 516

Query: 558 TSTNFCTLPRRPRSAICTFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQ 617
           ++T+  +  R  R ++ +   +  EKG   KGLGF+I GG+D  RG +GIF+K+I  NG 
Sbjct: 517 STTHVESPWRLIRPSVISIIGLYKEKG---KGLGFSIAGGRDCIRGQMGIFVKTIFPNGS 573

Query: 618 AAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKNGSISLHICRRLKS 668
           AAEDGRLKEGDEIL +NG     LT  EAI  FK I++G   L +  +L S
Sbjct: 574 AAEDGRLKEGDEILDVNGIPIKGLTFQEAIHTFKQIRSGLFVLTVRTKLLS 624

Rattus norvegicus (taxid: 10116)

>sp|O15018|PDZD2_HUMAN PDZ domain-containing protein 2 OS=Homo sapiens GN=PDZD2 PE=1 SV=4

 Score = 96.3 bits (238), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 50/99 (50%), Positives = 64/99 (64%), Gaps = 3/99 (3%)

Query: 570 RSAICTFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDE 629
           R ++ +   +  EKG   KGLGF+I GG+D  RG +GIF+K+I  NG AAEDGRLKEGDE
Sbjct: 580 RPSVISIIGLYKEKG---KGLGFSIAGGRDCIRGQMGIFVKTIFPNGSAAEDGRLKEGDE 636

Query: 630 ILAINGQVCHDLTHLEAISLFKTIKNGSISLHICRRLKS 668
           IL +NG     LT  EAI  FK I++G   L +  +L S
Sbjct: 637 ILDVNGIPIKGLTFQEAIHTFKQIRSGLFVLTVRTKLVS 675

Homo sapiens (taxid: 9606)

>sp|O75970|MPDZ_HUMAN Multiple PDZ domain protein OS=Homo sapiens GN=MPDZ PE=1 SV=2

 Score = 89.7 bits (221), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 75/271 (27%), Positives = 119/271 (43%), Gaps = 71/271 (26%)

Query: 395  RRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGL 454
            ++   + LGI IA    S  G++  F+ A +   G+A +   L +GD I+++ G    G+
Sbjct: 1866 KKGPTDSLGISIAGGVGSPLGDVPIFI-AMMHPTGVAAQTQKLRVGDRIVTICGTSTEGM 1924

Query: 455  TMTQAKSII--SSGPLNMDLLISRTSLKKSNAENEYNESHSREKKSKETRFS-LDKQNDF 511
            T TQA +++  +SG + M ++        +  +      H +E  S    F+ L   + F
Sbjct: 1925 THTQAVNLLKNASGSIEMQVV--------AGGDVSVVTGHQQEPASSSLSFTGLTSSSIF 1976

Query: 512  ESSNEQDKNNQKRLFQKNCHSINNKLLRKAIISTGSISGDEEETILTSTNFCTLPRRPRS 571
                      Q  L    C SI                              TL R P  
Sbjct: 1977 ----------QDDLGPPQCKSI------------------------------TLERGP-- 1994

Query: 572  AICTFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEIL 631
                             GLGF+IVGG  SP G + I++K++   G A+EDGRLK GD+I+
Sbjct: 1995 ----------------DGLGFSIVGGYGSPHGDLPIYVKTVFAKGAASEDGRLKRGDQII 2038

Query: 632  AINGQVCHDLTHLEAISLFKTIKNGSISLHI 662
            A+NGQ    +TH EA+++ K  K G+++L +
Sbjct: 2039 AVNGQSLEGVTHEEAVAILKRTK-GTVTLMV 2068

Interacts with HTR2C and provokes its clustering at the cell surface (By similarity). Member of the NMDAR signaling complex that may play a role in control of AMPAR potentiation and synaptic plasticity in excitatory synapses.

Homo sapiens (taxid: 9606)

>sp|Q14005|IL16_HUMAN Pro-interleukin-16 OS=Homo sapiens GN=IL16 PE=1 SV=4

 Score = 88.6 bits (218), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 48/88 (54%), Positives = 60/88 (68%), Gaps = 1/88 (1%)

Query: 579 IVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVC 638
           IV  KG   KGLGF+IVGGKDS  G IGI++K+I   G AA DGRL+EGDEIL +NG+  
Sbjct: 217 IVLMKG-QAKGLGFSIVGGKDSIYGPIGIYVKTIFAGGAAAADGRLQEGDEILELNGESM 275

Query: 639 HDLTHLEAISLFKTIKNGSISLHICRRL 666
             LTH +A+  FK  K G ++L +  RL
Sbjct: 276 AGLTHQDALQKFKQAKKGLLTLTVRTRL 303

Isoform 3 is involved in cell cycle progression in T-cells. Appears to be involved in transcriptional regulation of SKP2 and is probably part of a transcriptional repression complex on the core promoter of the SKP2 gene. May act as a scaffold for GABPB1 (the DNA-binding subunit the GABP transcription factor complex) and HDAC3 thus maintaining transcriptional repression and blocking cell cycle progression in resting T-cells.

Homo sapiens (taxid: 9606)

>sp|Q8VBX6|MPDZ_MOUSE Multiple PDZ domain protein OS=Mus musculus GN=Mpdz PE=1 SV=2

 Score = 88.6 bits (218), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 41/85 (48%), Positives = 60/85 (70%), Gaps = 3/85 (3%)

Query: 578  TIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQV 637
            TI  ++GP   GLGF+IVGG  SP G + I++K++   G AAEDGRLK GD+I+A+NGQ 
Sbjct: 1972 TITLDRGP--DGLGFSIVGGYGSPHGDLPIYVKTVFAKGAAAEDGRLKRGDQIIAVNGQS 2029

Query: 638  CHDLTHLEAISLFKTIKNGSISLHI 662
               +TH EA+++ K  K G+++L +
Sbjct: 2030 LEGVTHEEAVAILKRTK-GTVTLMV 2053

Interacts with HTR2C and provokes its clustering at the cell surface. Member of the NMDAR signaling complex that may play a role in control of AMPAR potentiation and synaptic plasticity in excitatory synapses.

Mus musculus (taxid: 10090)

>sp|Q68DX3|FRPD2_HUMAN FERM and PDZ domain-containing protein 2 OS=Homo sapiens GN=FRMPD2 PE=1 SV=3

 Score = 87.4 bits (215), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 70/265 (26%), Positives = 128/265 (48%), Gaps = 15/265 (5%)

Query: 384  SQEGQTMVRVN-RRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDE 442
            ++ G+ +VRV  +RD +   G  I + + S + + G F+ + I+ GG AEK   ++ G +
Sbjct: 767  AEPGREIVRVTLKRDPHRGFGFVINEGEYSGQADPGIFI-SSIIPGGPAEKAKTIKPGGQ 825

Query: 443  IISVNGQRLRGLTMTQAKSIISSGPLNMDLLISRTSLKKSNAENEYNESHSREKKSKETR 502
            I+++N   L G T   A  +I + P N++L+IS++     N  +E   S +    S    
Sbjct: 826  ILALNHISLEGFTFNMAVRMIQNSPDNIELIISQSKGVGGNNPDEEKNSTANSGVSSTDI 885

Query: 503  FSLDKQNDFESSNEQDKNNQKRLFQKNCHSINNKLLRKAIISTGSISGDEEETILTSTNF 562
             S   Q    S  +    N + L      S+  +L  +  +S   + G        + + 
Sbjct: 886  LSFGYQGSLLSHTQDQDRNTEELDMAGVQSLVPRLRHQ--LSFLPLKG--------AGSS 935

Query: 563  CTLPRRPRSAICTFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDG 622
            C  P  P  +    + +   K  G   LGF++ GG ++     GI++KSI+  G AA++G
Sbjct: 936  CP-PSPPEISAGEIYFVELVKEDGT--LGFSVTGGINTSVPYGGIYVKSIVPGGPAAKEG 992

Query: 623  RLKEGDEILAINGQVCHDLTHLEAI 647
            ++ +GD +L ++G +   LTH +A+
Sbjct: 993  QILQGDRLLQVDGVILCGLTHKQAV 1017

May play a role in the regulation of tight junction formation. Binds phosphatidylinositol 3,4-bisphosphate (PtdIns(3,4)P2).

Homo sapiens (taxid: 9606)

>sp|O54824|IL16_MOUSE Pro-interleukin-16 OS=Mus musculus GN=Il16 PE=1 SV=3

 Score = 84.3 bits (207), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 46/78 (58%), Positives = 54/78 (69%), Gaps = 1/78 (1%)

Query: 579 IVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVC 638
           IV  KG   KGLGF+IVGGKDS  G IGI++KSI   G AA DGRL+EGDEIL +NG+  
Sbjct: 214 IVLMKG-QAKGLGFSIVGGKDSIYGPIGIYVKSIFAGGAAAADGRLQEGDEILELNGESM 272

Query: 639 HDLTHLEAISLFKTIKNG 656
             LTH +A+  FK  K G
Sbjct: 273 AGLTHQDALQKFKQAKKG 290

Isoform 2 is involved in cell cycle progression in T-cells. Appears to be involved in transcriptional regulation of SKP2 and is probably part of a transcriptional repression complex on the core promoter of the SKP2 gene. May act as a scaffold for GABPB1 (the DNA-binding subunit the GABP transcription factor complex) and HDAC3 thus maintaining transcriptional repression and blocking cell cycle progression in resting T-cells.

Mus musculus (taxid: 10090)

>sp|O55164|MPDZ_RAT Multiple PDZ domain protein OS=Rattus norvegicus GN=Mpdz PE=1 SV=1

 Score = 83.6 bits (205), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 41/85 (48%), Positives = 60/85 (70%), Gaps = 3/85 (3%)

Query: 578  TIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQV 637
            TI  ++GP   GLGF+IVGG  SP G + I++K++   G AAEDGRLK GD+I+A+NGQ 
Sbjct: 1971 TITLDRGP--DGLGFSIVGGYGSPHGDLPIYVKTVFAKGAAAEDGRLKRGDQIIAVNGQS 2028

Query: 638  CHDLTHLEAISLFKTIKNGSISLHI 662
               +TH EA+++ K  K G+++L +
Sbjct: 2029 LEGVTHEEAVAILKRTK-GTVTLMV 2052

Interacts with HTR2C and provokes its clustering at the cell surface. Member of the NMDAR signaling complex that may play a role in control of AMPAR potentiation and synaptic plasticity in excitatory synapses.

Rattus norvegicus (taxid: 10116)

>sp|Q8NI35|INADL_HUMAN InaD-like protein OS=Homo sapiens GN=INADL PE=1 SV=3

 Score = 74.3 bits (181), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 75/269 (27%), Positives = 123/269 (45%), Gaps = 30/269 (11%)

Query: 402  LGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKS 461
            LG+ +A  K+ S  +I  FVV  I   G A  +G + +GDE++ +N Q L G +   A +
Sbjct: 1249 LGLSLAGNKDRSRMSI--FVVG-INPEGPAAADGRMRIGDELLEINNQILYGRSHQNASA 1305

Query: 462  IISSGPLNMDLLISRTSLKKSNAENEYNESHSREKKSKETRFSLDKQNDFESSNEQDKNN 521
            II + P  + L+     ++  +A N+   +      S  +    D+      S+E+D + 
Sbjct: 1306 IIKTAPSKVKLVF----IRNEDAVNQMAVTPFPVPSSSPSSIE-DQSGTEPISSEEDGSV 1360

Query: 522  Q---KRLFQKNCHSINNKLLRKAIISTGSISGDEEETIL--------TSTNFCTL----- 565
            +   K+L +     +    +++    T  +S   +E  L        T  +F        
Sbjct: 1361 EVGIKQLPESESFKLAVSQMKQQKYPT-KVSFSSQEIPLAPASSYHSTDADFTGYGGFQA 1419

Query: 566  PRRPRSAICTF---HTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDG 622
            P     A C       ++ E   G+ GLG +IVGGKD+P  AI   I  + + G AA DG
Sbjct: 1420 PLSVDPATCPIVPGQEMIIEISKGRSGLGLSIVGGKDTPLNAI--VIHEVYEEGAAARDG 1477

Query: 623  RLKEGDEILAINGQVCHDLTHLEAISLFK 651
            RL  GD+IL +NG    + +H EAI+  +
Sbjct: 1478 RLWAGDQILEVNGVDLRNSSHEEAITALR 1506

Scaffolding protein that may bring different proteins into adjacent positions at the cell membrane. May regulate protein targeting, cell polarity and integrity of tight junctions. May regulate the surface expression and/or function of ASIC3 in sensory neurons.

Homo sapiens (taxid: 9606)

>sp|Q3T0C9|SYJ2B_BOVIN Synaptojanin-2-binding protein OS=Bos taurus GN=SYNJ2BP PE=2 SV=1

 Score = 73.2 bits (178), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 42/97 (43%), Positives = 58/97 (59%), Gaps = 5/97 (5%)

Query: 573 ICTFHTIVFEKGPGKKGLGFTIVGGKDSP--RGAIGIFIKSILDNGQAAEDGRLKEGDEI 630
           + T   I   +GP   GLGF IVGG D        GIF+  I +NG AA DGRL+EGD+I
Sbjct: 8   LVTEEEINLTRGP--SGLGFNIVGGTDQQYVSNDSGIFVSRIKENGAAALDGRLQEGDKI 65

Query: 631 LAINGQVCHDLTHLEAISLFKTIKNGSISLHICRRLK 667
           L++NGQ   +L H +A+ LF+     ++SL +  RL+
Sbjct: 66  LSVNGQDLKNLLHQDAVDLFRN-AGYAVSLRVQHRLQ 101

Regulates endocytosis of activin type 2 receptor kinases through the Ral/RALBP1-dependent pathway and may be involved in suppression of activin-induced signal transduction.

Bos taurus (taxid: 9913)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	671
328780558	768	PREDICTED: hypothetical protein LOC10057	0.867	0.757	0.333	5e-81
340709940	769	PREDICTED: hypothetical protein LOC10065	0.685	0.598	0.389	7e-80
383852366	756	PREDICTED: uncharacterized protein LOC10	0.678	0.601	0.387	8e-80
350399259	769	PREDICTED: hypothetical protein LOC10075	0.703	0.613	0.392	3e-79
380028145	767	PREDICTED: uncharacterized protein LOC10	0.695	0.608	0.387	3e-79
242014196	756	pdz domain protein arc, putative [Pedicu	0.409	0.363	0.467	4e-74
156548426	750	PREDICTED: hypothetical protein LOC10012	0.646	0.578	0.354	6e-73
189233639	557	PREDICTED: similar to arc CG6741-PB [Tri	0.371	0.447	0.485	1e-70
357611875	872	putative pdz domain protein arc [Danaus	0.694	0.534	0.312	8e-68
307190906	781	PDZ domain-containing protein 2 [Campono	0.368	0.316	0.494	7e-66

>gi|328780558|ref|XP_003249819.1| PREDICTED: hypothetical protein LOC100578420 [Apis mellifera]

 Score =  308 bits (790), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 244/732 (33%), Positives = 358/732 (48%), Gaps = 150/732 (20%)

Query: 25  KQKALLAEKRNPLLEKVKNTKLTCFKANNIYSNVNNGIIDST--------SLTDKSISVD 76
           K++  + EKRNPLL++VKNT+L+ FK  +          +           L   S++ +
Sbjct: 84  KERRRVCEKRNPLLDRVKNTRLSFFKDRDSDEEEQEEDEEPEKLQFRSMCELNQHSLTRN 143

Query: 77  CLNESITESDTSTLF----------KRSKS------------------------------ 96
               S+ ESD   +           +RSKS                              
Sbjct: 144 EFRRSVCESDLKEIIEEEKTQAKRKRRSKSQSRLPHRKQQEDRSSFLGLRSSAGQKMATL 203

Query: 97  NDNVIYSHTSNDENEWGPSNAKDNQDQWPSR--------------DATGDKNTCIDRI-- 140
           +D++I          W  S       Q P R              DAT    +  D I  
Sbjct: 204 SDDIIEETVGQQNRRWRKSREFVQDHQPPRRSSMDHVLEGSTSTEDATFKDGSQFDSITP 263

Query: 141 --------KAISDKYFKSN--KIIVKLYSNNKKSTTRRQ-RSFSFGALPGLDNLKDNPLY 189
                   +A+ D+Y KS+  K+I K+Y    K   RR+ RSFS+G LPGL+ L+ NPLY
Sbjct: 264 SSCLAAKFRAMQDRYLKSSTSKLIAKIYKKEGKDKERRRLRSFSYGTLPGLEELRTNPLY 323

Query: 190 NEEEDYDDSDSGIVNSSTNSSVVDDHYDFRATRKENCRRLSFDRTQIINKCLRTSCNDSF 249
            EE+D DD+DSGI+++ + +S + D                 DR       L T+ NDS 
Sbjct: 324 -EEQDQDDNDSGILDNDSATSSLLD-----------------DRCSSSASGLLTTLNDS- 364

Query: 250 SSLQTCSSPQSLLLPTLECSASKCDSPTISTRSTVTSNSEKPSFLDKF---------RNS 300
            SL   S PQ   LP  + S+S  D         V   ++  S LD +         R  
Sbjct: 365 -SLN--SPPQ---LPPRKPSSSIVD---------VERTAKMFSSLDVYCGRNEGRGCRKD 409

Query: 301 PSKSENGQLPNFQIQSYGYDSPILSSRSQNSSMISEKYNLDVPNIFNRNSGSQSLLEIPA 360
            S+    +  + QI     ++ ++  + ++SS +SE+      N+  R +    L     
Sbjct: 410 MSRFNALEDSSSQI-CQAANNELIDRQDRDSSKLSEE-----KNVIERLNSKDCL----- 458

Query: 361 YQNSSDYHSMMEISELSSENSEDSQEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGF 420
              S +Y S    S LS   +        +V++ R   ++ LGI+IAK   SS G    +
Sbjct: 459 --RSENYQS----SRLSVIRNRSYTTETMVVKLPRESSDQCLGIFIAKTAESSPG----Y 508

Query: 421 VVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSG--PLNMDLLISRTS 478
           +VAH+V  GLA+KEG L +GDEI+ VNG+RLRGL+M +A+ I+ SG  P ++D+++SR S
Sbjct: 509 LVAHVVPNGLADKEGTLRIGDEILIVNGKRLRGLSMAEARKILGSGNGPGDVDIVVSRYS 568

Query: 479 LKKSNAENEYNESHSREKKSKETRFSLDKQNDFESSNEQDKNNQKRLFQKNCHSINNKLL 538
               + +     S   E    E    +  +N   +   + +    R  +  C+   +   
Sbjct: 569 AVDQSPKKLTESSVDYENVHMENGHGVIVENSPGTHFRKHQTKHHRDRKNECNRTGSS-- 626

Query: 539 RKAIISTGSISGDEEETILTSTNFCTLPRRPRSAICTFHTIVFEKGPGKKGLGFTIVGGK 598
            KA++  G+ S +        +NFCTLPRRPR+ + TF T+VF+KGPGKK LGFTIVGG 
Sbjct: 627 DKAVVENGTSSQN-------VSNFCTLPRRPRNTVSTFLTVVFQKGPGKKSLGFTIVGGS 679

Query: 599 DSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKNGSI 658
           DSP+G+IGIFIKS+L  GQAAEDGRL+ GDEILA+NG VCHDLTH +A+ LF+ IK G +
Sbjct: 680 DSPKGSIGIFIKSVLPGGQAAEDGRLRAGDEILAVNGHVCHDLTHRKAVQLFRNIKTGPV 739

Query: 659 SLHICRRLKSKK 670
           +LH+CRR+K+K+
Sbjct: 740 ALHLCRRIKNKE 751

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340709940|ref|XP_003393557.1| PREDICTED: hypothetical protein LOC100650950 [Bombus terrestris]

 Score =  305 bits (780), Expect = 7e-80,   Method: Compositional matrix adjust.
 Identities = 216/555 (38%), Positives = 306/555 (55%), Gaps = 95/555 (17%)

Query: 139 RIKAISDKYFKSN--KIIVKLYSNNKKSTTRRQ-RSFSFGALPGLDNLKDNPLYNEEEDY 195
           + +A+ D+Y KS+  KII K+Y    K   RR+ RSFS+G LPGL+ L+ NPLY EE+D 
Sbjct: 270 KFRAMQDRYLKSSTSKIIAKIYKKEGKDKERRRLRSFSYGTLPGLEELRTNPLY-EEQDQ 328

Query: 196 DDSDSGIV-NSSTNSSVVDDHYDFRATRKENCRRLSFDRTQIINKCLRTSCNDSFSSLQT 254
           DD+DSGI+ N S  SS++DD     A+                   L T+ NDS  SL  
Sbjct: 329 DDNDSGILDNDSATSSLLDDRCSSSAS------------------GLLTALNDS--SLN- 367

Query: 255 CSSPQSLLLPTLECSASKCD----SPTISTRSTVTSNSE------KPSFLDKFRNSPSK- 303
            S PQ   LP  + S+S  D    S   ST     S +E        S ++ F +SP + 
Sbjct: 368 -SPPQ---LPPRKPSSSIVDVERTSRLFSTLDIYCSRNEGRRCGRNASEMNTFEDSPGQI 423

Query: 304 --SENGQLPNFQIQSYGYDSP----ILSSRSQNSSMISEKYNLDVPNIFNRNSGSQSLLE 357
             + N +L + Q +  G  SP    ++       S+ SE Y           +G  S++ 
Sbjct: 424 CQAANNELIDRQDRD-GSKSPEEKDVIERLDGKGSLGSENYQ----------TGRLSVIR 472

Query: 358 IPAYQNSSDYHSMMEISELSSENSEDSQEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNI 417
              Y               ++EN         +V++ R   ++ LGI+IAK   SS G  
Sbjct: 473 NRPY---------------TTEN--------IVVKLPRESSDQCLGIFIAKTAESSPG-- 507

Query: 418 GGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSG--PLNMDLLIS 475
             ++VAH+V  GLA+KEG L +GDEI+ VNG+RLRGL+M +A+ I+ SG  P ++D+++S
Sbjct: 508 --YLVAHVVPNGLADKEGTLRIGDEILIVNGKRLRGLSMVEARKILGSGNGPGDVDIVVS 565

Query: 476 RTSLKKSNAENEYNESHSREKKSKETRFSLDKQNDFESSNEQDKNNQKRLFQKNCHSINN 535
           R S    + +     S   E    E    +  +N   +   + +    R  +  C+   +
Sbjct: 566 RYSAVDQSPKKLTESSVDYENVHMENGHGVIVENSPSTHFRKHQTKHHRDRKNECNRSTS 625

Query: 536 KLLRKAIISTGSISGDEEETILTSTNFCTLPRRPRSAICTFHTIVFEKGPGKKGLGFTIV 595
               KAI+S  +  G +     + +NFCTLPRRPR+ + TF T+VF+KGPGKK LGFTIV
Sbjct: 626 S--DKAIVSVDN-GGSQ-----SVSNFCTLPRRPRNTVSTFLTVVFQKGPGKKSLGFTIV 677

Query: 596 GGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKN 655
           GG DSP+G+IGIFIKS+L  GQAAEDGRL+ GDEILA+NG VCHDLTH +A+ LF+ IK 
Sbjct: 678 GGSDSPKGSIGIFIKSVLPGGQAAEDGRLRAGDEILAVNGHVCHDLTHKKAVQLFRNIKT 737

Query: 656 GSISLHICRRLKSKK 670
           G I+LH+CRR+K+K+
Sbjct: 738 GPIALHLCRRVKNKE 752

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383852366|ref|XP_003701699.1| PREDICTED: uncharacterized protein LOC100880562 [Megachile rotundata]

 Score =  305 bits (780), Expect = 8e-80,   Method: Compositional matrix adjust.
 Identities = 213/550 (38%), Positives = 302/550 (54%), Gaps = 95/550 (17%)

Query: 139 RIKAISDKYFKSN--KIIVKLYSNNKKSTTRRQ-RSFSFGALPGLDNLKDNPLYNEEEDY 195
           + +A+ D+Y KS+  K+I K+Y  + K   RR+ RSFS+G LPGL+ L+ NPLY EE+D 
Sbjct: 267 KFRAMQDRYLKSSTSKLIAKIYKKDAKDRERRRLRSFSYGTLPGLEELRTNPLY-EEQDQ 325

Query: 196 DDSDSGIV-NSSTNSSVVDDHYDFRATRKENCRRLSFDRTQIINKCLRTSCNDSFSSLQT 254
           DD+DSGI+ N S  SS++D                  DR       L T  NDS  S   
Sbjct: 326 DDNDSGILDNDSATSSLLD------------------DRCSSSASGLLTGLNDSSLS--- 364

Query: 255 CSSPQSLLLPTLECSASKCDSPTISTRSTVTSNSEKPSFLDKFRNSPSKSENGQLPNFQI 314
            S PQ   LP  + S+S  D         V   +   S LD +    S++E         
Sbjct: 365 -SPPQ---LPPRKPSSSIVD---------VERTARLFSSLDMY---CSRNEG-------- 400

Query: 315 QSYGYDSPILSSRSQNSSMISEKYNLDVPNIFNRNSGSQSLLEIPAYQNSSDYHSMMEIS 374
           +    D   +S+   +SS I +  N +   + NR   S    ++    NS    S  E +
Sbjct: 401 RGCRRDMSRVSALEDSSSQICQAANNE---LINREDKSPDRKDVMERLNSESVGS--ESA 455

Query: 375 ELSSENSEDSQEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKE 434
            L    +        +V++ R   ++ LGI+IAK   SS G    ++VAH+V  GLA+KE
Sbjct: 456 RLPVVRNRSYATETMVVKLPRESSDQCLGIFIAKTAESSPG----YLVAHVVPNGLADKE 511

Query: 435 GCLELGDEIISVNGQRLRGLTMTQAKSIISSG--PLNMDLLISR------TSLKKSNAEN 486
           G L +GDEI+ VNG+RLRGL+M +A+ I+ SG  P ++D+++SR      T  K + +  
Sbjct: 512 GTLRIGDEILIVNGKRLRGLSMVEARRILGSGSGPGDVDIVVSRYTAMDQTQKKLTESSV 571

Query: 487 EYNESHSRE------KKSKETRFSLDKQNDFESSNEQDKNNQKRLFQKNCHSINNKLLRK 540
           +Y   H         + S  +RF   +    +  NE +++N     +K+  +++N     
Sbjct: 572 DYENVHMENGHGTILENSPRSRFRKRQSKHRDKRNECNRSNSS---EKSVVNVDN----- 623

Query: 541 AIISTGSISGDEEETILTSTNFCTLPRRPRSAICTFHTIVFEKGPGKKGLGFTIVGGKDS 600
                GS S          +NFCTLPRRPRS + TF T+VF+KGPGKK LGFTIVGG DS
Sbjct: 624 -----GSQS---------VSNFCTLPRRPRSTVSTFMTVVFQKGPGKKSLGFTIVGGSDS 669

Query: 601 PRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKNGSISL 660
           P+G+IGIFIKS+L  GQAAEDGRL+ GDEILA+NG VCHDLTH +A+ LF+ IK G ++L
Sbjct: 670 PKGSIGIFIKSVLPGGQAAEDGRLRAGDEILAVNGHVCHDLTHRKAVQLFRNIKTGPVAL 729

Query: 661 HICRRLKSKK 670
           H+CRR+K+K+
Sbjct: 730 HLCRRIKNKE 739

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350399259|ref|XP_003485471.1| PREDICTED: hypothetical protein LOC100750183 [Bombus impatiens]

 Score =  303 bits (775), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 213/543 (39%), Positives = 301/543 (55%), Gaps = 71/543 (13%)

Query: 139 RIKAISDKYFKSN--KIIVKLYSNNKKSTTRRQ-RSFSFGALPGLDNLKDNPLYNEEEDY 195
           + +A+ D+Y KS+  KII K+Y    K   RR+ RSFS+G LPGL+ L+ NPLY EE+D 
Sbjct: 270 KFRAMQDRYLKSSTSKIIAKIYKKEGKDKERRRLRSFSYGTLPGLEELRTNPLY-EEQDQ 328

Query: 196 DDSDSGIV-NSSTNSSVVDDHYDFRATRKENCRRLSFDRTQIINKCLRTSCNDSFSSLQT 254
           DD+DSGI+ N S  SS++D                  DR       L T+ NDS  SL  
Sbjct: 329 DDNDSGILDNDSATSSLLD------------------DRCSSSASGLLTALNDS--SLN- 367

Query: 255 CSSPQSLLLPTLECSASKCDSPTISTRSTVTSNSEKPSFLDKFRNSPSKSENGQLPNFQI 314
            S PQ   LP  + S+S  D         V   S   S LD + +       G+  N   
Sbjct: 368 -SPPQ---LPPRKPSSSIVD---------VERTSRLFSTLDIYCSRNEGRRCGR--NASE 412

Query: 315 QSYGYDSPILSSRSQNSSMISEK-----YNLDVPNIFNRNSGSQSLLEIPAYQNSSDYHS 369
            +   DSP    ++ N+ +I  +      + +  ++  R  G  SL        S +Y +
Sbjct: 413 TNTLEDSPGQICQAANNELIDRQDRDGSKSPEEKDVIERLDGKGSL-------GSENYQT 465

Query: 370 MMEISELSSENSEDSQEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGG 429
               S LS   +        +V++ R   ++ LGI+IAK   SS G    ++VAH+V  G
Sbjct: 466 ----SRLSVIRNRPYTTENIVVKLPRESSDQCLGIFIAKTAESSPG----YLVAHVVPNG 517

Query: 430 LAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSG--PLNMDLLISRTSLKKSNAENE 487
           LA+KEG L +GDEI+ VNG+RLRGL+M +A+ I+ SG  P ++D+++SR S    + +  
Sbjct: 518 LADKEGTLRIGDEILIVNGKRLRGLSMVEARKILGSGNGPGDVDIVVSRYSAVDQSPKKL 577

Query: 488 YNESHSREKKSKETRFSLDKQNDFESSNEQDKNNQKRLFQKNCHSINNKLLRKAIISTGS 547
              S   E    E    +  +N   +   + +    R  +  C+   +    KAI+S  +
Sbjct: 578 TESSVDYENVHMENGHGVIVENSPSTHFRKHQTKHHRDRKNECNRSTSS--DKAIVSVDN 635

Query: 548 ISGDEEETILTSTNFCTLPRRPRSAICTFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGI 607
             G +     + +NFCTLPRRPR+ + TF T+VF+KGPGKK LGFTIVGG DSP+G+IGI
Sbjct: 636 -GGSQ-----SVSNFCTLPRRPRNTVSTFLTVVFQKGPGKKSLGFTIVGGSDSPKGSIGI 689

Query: 608 FIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKNGSISLHICRRLK 667
           FIKS+L  GQAAEDGRL+ GDEILA+NG VCHDLTH +A+ LF+ IK G I+LH+CRR+K
Sbjct: 690 FIKSVLPGGQAAEDGRLRAGDEILAVNGHVCHDLTHKKAVQLFRNIKTGPIALHLCRRVK 749

Query: 668 SKK 670
           +K+
Sbjct: 750 NKE 752

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380028145|ref|XP_003697769.1| PREDICTED: uncharacterized protein LOC100871550 [Apis florea]

 Score =  302 bits (774), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 212/547 (38%), Positives = 304/547 (55%), Gaps = 80/547 (14%)

Query: 139 RIKAISDKYFKSN--KIIVKLYSNNKKSTTRRQ-RSFSFGALPGLDNLKDNPLYNEEEDY 195
           + +A+ D+Y KS+  K+I K+Y    K   RR+ RSFS+G LPGL+ L+ NPLY EE+D 
Sbjct: 269 KFRAMQDRYLKSSTSKLIAKIYKKEGKDKERRRLRSFSYGTLPGLEELRTNPLY-EEQDQ 327

Query: 196 DDSDSGIV-NSSTNSSVVDDHYDFRATRKENCRRLSFDRTQIINKCLRTSCNDSFSSLQT 254
           DD+DSGI+ N S  SS++D                  DR       L T+ NDS  SL  
Sbjct: 328 DDNDSGILDNDSATSSLLD------------------DRCSSSASGLLTTLNDS--SLN- 366

Query: 255 CSSPQSLLLPTLECSASKCDSPTISTRSTVTSNSEKPSFLDKF---------RNSPSKSE 305
            S PQ   LP  + S+S  D         V   ++  S LD +         R   S+  
Sbjct: 367 -SPPQ---LPPRKPSSSIVD---------VERTAKMFSSLDVYCGRNEGRGCRKDVSRFS 413

Query: 306 NGQLPNFQIQSYGYDSPILSSRSQNSSMISEKYNLDVPNIFNRNSGSQSLLEIPAYQNSS 365
             +  + QI     +S ++  + ++SS +SE+ N+    I   NS  +  L    YQ+S 
Sbjct: 414 ALEDSSSQI-CQAANSELIDRQDRDSSKLSEEKNV----IERLNS--KDCLGPENYQSS- 465

Query: 366 DYHSMMEISELSSENSEDSQEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHI 425
                     LS   +        +V++ R   ++ LGI+IAK   SS G    ++VAH+
Sbjct: 466 ---------RLSVIRNRSYTTETMVVKLPRESSDQCLGIFIAKTAESSPG----YLVAHV 512

Query: 426 VSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSG--PLNMDLLISRTSLKKSN 483
           V  GLA+KEG L +GDEI+ VNG+RLRGL+M +A+ I+ SG  P ++D+++SR S    +
Sbjct: 513 VPNGLADKEGTLRIGDEILIVNGKRLRGLSMAEARKILGSGNGPGDVDIVVSRYSAVDQS 572

Query: 484 AENEYNESHSREKKSKETRFSLDKQNDFESSNEQDKNNQKRLFQKNCHSINNKLLRKAII 543
            +     S   E    E    +  +N   +   + +    R  +  C+   +    KA++
Sbjct: 573 PKKLTESSVDYENVHMENGHGVIVENSPGTHFRKHQTKHHRDRKNECNRSGSS--DKAVV 630

Query: 544 STGSISGDEEETILTSTNFCTLPRRPRSAICTFHTIVFEKGPGKKGLGFTIVGGKDSPRG 603
             G+ S +        +NFCTLPRRPR+ + TF T+VF+KGPGKK LGFTIVGG DSP+G
Sbjct: 631 ENGTSSQN-------VSNFCTLPRRPRNTVSTFLTVVFQKGPGKKSLGFTIVGGSDSPKG 683

Query: 604 AIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKNGSISLHIC 663
           +IGIFIKS+L  GQAAEDGRL+ GDEILA+NG VCHDLTH +A+ LF+ IK G ++LH+C
Sbjct: 684 SIGIFIKSVLPGGQAAEDGRLRAGDEILAVNGHVCHDLTHRKAVQLFRNIKTGPVALHLC 743

Query: 664 RRLKSKK 670
           RR+K+K+
Sbjct: 744 RRVKNKE 750

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242014196|ref|XP_002427779.1| pdz domain protein arc, putative [Pediculus humanus corporis] gi|212512237|gb|EEB15041.1| pdz domain protein arc, putative [Pediculus humanus corporis]

 Score =  286 bits (731), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 157/336 (46%), Positives = 218/336 (64%), Gaps = 61/336 (18%)

Query: 390 MVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQ 449
           ++R+ R   +EELGI+IAK K + +G   G+++AHIV  GLA+++  L +GDEI++VNG+
Sbjct: 410 VIRLFRSSPDEELGIFIAKTKLADQG-APGYLIAHIVPDGLADRDKNLLVGDEIVNVNGR 468

Query: 450 RLRGLTMTQAKSIISSGPLNMDLLISRTSLKKSNAENEYNESHSREKKSKETRFSLDKQN 509
           RLRGL+M  A+ I+ SGP+ +D++I+R+  K  +A      +  REK  K    S+D +N
Sbjct: 469 RLRGLSMPTARRILCSGPVEVDIVIARSVSKDEDAV-----TVKREKPIKMRESSVDYEN 523

Query: 510 ----------------------------------DFESSNEQDKNNQKRLFQKNCHSINN 535
                                              F S+  + K ++ ++  +N +SIN+
Sbjct: 524 VQIQMSSSSTSTVVNIKKKMENEEDGSRPVIFTPGFCSTPSKPKMDKAKILLRNGNSINS 583

Query: 536 KLLRKAIISTGSISGDEEET--ILTSTN------------------FCTLPRRPRSAICT 575
           K+L+KA+ +  S S DE+++  IL S+N                   CTLPRRP+S IC+
Sbjct: 584 KMLQKALANYNS-SNDEQQSSLILQSSNMNKKKKSITESSLFLNGNLCTLPRRPKSTICS 642

Query: 576 FHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAING 635
           F TI++EKGPGKK LGFTIVGGKDSP+GA+GIFIKSILDNGQAAEDGRL+EGDEILA+NG
Sbjct: 643 FQTIIYEKGPGKKSLGFTIVGGKDSPKGALGIFIKSILDNGQAAEDGRLREGDEILAVNG 702

Query: 636 QVCHDLTHLEAISLFKTIKNGSISLHICRRLKSKKT 671
           QVCHDLTH EA+++FK IK G I+LHICRR KS++T
Sbjct: 703 QVCHDLTHTEAVAIFKRIKVGPIALHICRRTKSEET 738

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156548426|ref|XP_001604728.1| PREDICTED: hypothetical protein LOC100121142 [Nasonia vitripennis]

 Score =  281 bits (720), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 194/547 (35%), Positives = 297/547 (54%), Gaps = 113/547 (20%)

Query: 139 RIKAISDKYFKSN--KIIVKLY---SNNKKSTTRRQRSFSFGALPGLDNLKDNPLYNEEE 193
           + +A+ ++Y KS+  K+I K+Y    ++K    +R RSFS+G LPGLD L+ NPL+    
Sbjct: 287 KFRAMQNRYLKSSTSKLIGKIYKKEGDSKDKERKRLRSFSYGTLPGLDELRTNPLF---- 342

Query: 194 DYDDSDSGIVNSSTNSSVVDDHYDFRATRKENCRRLSFDRTQIINKCLRTSCNDSFSSLQ 253
             +D D    ++  +S ++D                                NDS +S  
Sbjct: 343 --EDHDQEPEDNDNDSGILD--------------------------------NDSATS-- 366

Query: 254 TCSSPQSLLLPTLECSASKCDSPTISTRSTVTSNSEKPSFLDKFRNSPSKSE-----NGQ 308
                 SLL         +C S  +++ S V  +S +P+ L      P +       +GQ
Sbjct: 367 ------SLL-------DDRCSS--VASESLVHGSSAEPTVLGLPPKIPPRRPSAPHLHGQ 411

Query: 309 LPNFQIQSYGYDSPILSSRSQNSSMISEKYNLDVPNIFNRNSGSQSLLEIPAYQNSSDYH 368
           L + +++ +           +++S++ E  + +V             L  PA    S   
Sbjct: 412 LRSKELRLF-----------RSTSLLDEAVDSNVG------------LSSPAL---SSKE 445

Query: 369 SMMEISELSSENSEDSQEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSG 428
           S  E S+L    S  S +   +V+++R    + LGI+IAK  +S+     G++VAH+V  
Sbjct: 446 STPEPSKLEVIRSNASVKKTLIVKLHRETSEQCLGIFIAKTPDSA-----GYLVAHVVPN 500

Query: 429 GLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSG---PLNMDLLISRTSLKKSNAE 485
           GLA+KEG L++GDEI+ VNG+RLRGLTM +A+ I+SSG   P  +D+++SR        +
Sbjct: 501 GLADKEGSLKIGDEILIVNGKRLRGLTMPEARKILSSGGGAPGEIDIVVSRMIPSNLPVQ 560

Query: 486 NEYNESHSREKKSKETRFSLDKQN-DFESSNEQDKNNQKRLFQKNCHSINNKLLRKAIIS 544
               ES            S+D +N   E+ +      +   F+K+  S   +  RK   +
Sbjct: 561 KRLMES------------SVDYENVSIENGHGVIVTPEPSHFRKHHQSRRQRSNRKLDEA 608

Query: 545 TGSISGDEEETILTSTNFCTLPRRPRSAICTFHTIVFEKGPGKKGLGFTIVGGKDSPRGA 604
             S + + ++++ +  NFCTLPRRPR+ + TF T+VFEKG GKK LGFTIVGG+DSP+G+
Sbjct: 609 KNS-AKENDKSMESLPNFCTLPRRPRNTMSTFLTVVFEKGAGKKSLGFTIVGGRDSPKGS 667

Query: 605 IGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKNGSISLHICR 664
           IGIF+KS+L  GQAAEDGRL+ GDEILA+NGQ+CHDLTH EA+ LF+ IKNG I+LH+CR
Sbjct: 668 IGIFVKSVLPTGQAAEDGRLRAGDEILALNGQICHDLTHREAVQLFRNIKNGPIALHLCR 727

Query: 665 RLKSKKT 671
           R++++ T
Sbjct: 728 RVRNRDT 734

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189233639|ref|XP_001813427.1| PREDICTED: similar to arc CG6741-PB [Tribolium castaneum] gi|270014407|gb|EFA10855.1| hypothetical protein TcasGA2_TC001632 [Tribolium castaneum]

 Score =  274 bits (701), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 138/284 (48%), Positives = 184/284 (64%), Gaps = 35/284 (12%)

Query: 389 TMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNG 448
           T+VR+ +R  +EELGI++ K    S     GFVVAHIV  G+A ++  L  GDE+IS+NG
Sbjct: 291 TLVRLVKRSPDEELGIFLTK----SREVFHGFVVAHIVPDGVAARQSSLMPGDEVISING 346

Query: 449 QRLRGLTMTQAKSIISSGPLNMDLLISRTSLKKSNAENEYNESHSREKKSKETRFSLDKQ 508
           + +  L M++AK  + +  L +DLL+ R ++K+S                          
Sbjct: 347 RDISALNMSEAKQSLCTSNLQVDLLVCRKAMKES-------------------------- 380

Query: 509 NDFESSNEQDKNNQKRLFQKNC--HSINNKLLRKAIIST-GSISGDEEETILTSTNFCTL 565
             F  S       +   FQKN   H   NK+LR+A+ ST  +       +  T TNFCTL
Sbjct: 381 --FVDSTPSPLYKRHHYFQKNSSSHGSYNKVLRRAVASTTKNTESPFPSSPQTETNFCTL 438

Query: 566 PRRPRSAICTFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLK 625
           PRRPRS ICTFHT++ EKGPG+K LGFTIVGG+DSP+GA+GIF+K+IL NGQAAEDGRLK
Sbjct: 439 PRRPRSTICTFHTVILEKGPGRKSLGFTIVGGRDSPKGALGIFVKTILANGQAAEDGRLK 498

Query: 626 EGDEILAINGQVCHDLTHLEAISLFKTIKNGSISLHICRRLKSK 669
            GDEILA+NGQVCHD++H +A+ LFK++KNG I+LH+CRR K+K
Sbjct: 499 AGDEILAVNGQVCHDISHADAVLLFKSVKNGPIALHVCRRNKAK 542

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357611875|gb|EHJ67690.1| putative pdz domain protein arc [Danaus plexippus]

 Score =  265 bits (676), Expect = 8e-68,   Method: Compositional matrix adjust.
 Identities = 202/647 (31%), Positives = 303/647 (46%), Gaps = 181/647 (27%)

Query: 139 RIKAISDKYFKS--NKIIVKLYSNNKK-----------------STTRRQR--------S 171
           +++A+SD+Y KS  N+   KLY  N +                 S +R++R        S
Sbjct: 280 KLRAMSDRYLKSSTNRFFSKLYKQNDEVGINSLNDSAIKSTSSASRSRKKRGGVKAKLRS 339

Query: 172 FSFGALPGLDNLKDNPLYNEEEDYDDSDSGIVNSSTNSSVVDDHYDFRATRKENCRRLSF 231
           FS+GALPGLD  +                       NS   DD Y               
Sbjct: 340 FSYGALPGLDEFQ---------------------KQNSVFHDDVY--------------- 363

Query: 232 DRTQIINKCLRTSCNDSFSSLQTCSSPQSLLLPTLECSAS--------KCDSPTISTRST 283
                     + SC+D    +Q C    S +L     ++S        +C+S    T S 
Sbjct: 364 ----------QVSCDDENVLIQDCEDADSGILVNESAASSIFDSDRISRCESSASHTNSQ 413

Query: 284 VTSNSEKPSFLDKFRNSPSKSENGQLPNFQIQSYGYDSPILSSRSQNSSMISEKYNLDVP 343
           + S+S   S    +  +     N +  N        D P    R    ++     +LD  
Sbjct: 414 IQSHSRSISGDQTYVKTRISYRNRRDKN--------DHPKPRPRQTQRAL-----SLDRK 460

Query: 344 NIFNRNSGSQSLLEIPAYQNSSDYHSMME---------ISEL-----SSENSEDSQEGQ- 388
            I  R   +    E P Y   ++   M +         I  +     +++N  + Q+ + 
Sbjct: 461 EILRRMPKNSEYAE-PQYLQLTEKQKMRQRDASLEDYGIPPIPPCRKATKNKSNKQQSEF 519

Query: 389 TMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNG 448
            +VR+ + +  +ELGI+IAK K   EG++G ++VAH+V+ GLA+KEG L++GDE+++VNG
Sbjct: 520 KVVRIIKNNPGDELGIFIAKTKLLDEGHVG-YLVAHVVAEGLADKEGTLQIGDELLNVNG 578

Query: 449 QRLRGLTMTQAKSIISSGPLNMDLLISRTSLKKSNAENEYNESHSREKKSKETRFSLDKQ 508
           +RLR LTM++AK  + SG   +D++I R   K  +      ES  RE   +      +  
Sbjct: 579 RRLRDLTMSEAKEALRSGSAEIDIVICRQRQKSEH------ESIQREPTQRNIALMRESS 632

Query: 509 NDFESS---------NEQDKNNQKRLFQKNCH---------------------------- 531
            D+E++         N+ D     R  +  C+                            
Sbjct: 633 VDYENAIILGKERCNNKYDIKVDLRQKEPACNRLLSGTDEADGTEDTQSRFLKGQSAGYS 692

Query: 532 SINNKLLRKAIISTG---------SISGD----------------EEETILT--STNFCT 564
           S+NNKLLR+ ++S G         S +GD                 E+ + T  + NFCT
Sbjct: 693 SMNNKLLRRQVVSYGGANKDALVLSCAGDIVDVDVPDGTTERTDKHEDNMQTQNTANFCT 752

Query: 565 LPRRPRSAICTFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRL 624
           LPR+PR+   T+HTIVFEKG GKK LGFTIVGG+DSPRG +GIFIKSIL  GQA +DGRL
Sbjct: 753 LPRKPRAPTHTYHTIVFEKGHGKKPLGFTIVGGRDSPRGPLGIFIKSILPQGQAIDDGRL 812

Query: 625 KEGDEILAINGQVCHDLTHLEAISLFKTIKNGSISLHICRRLKSKKT 671
             GDE+LA+NGQ CH+L H+EA++LFK +++G+I L +CRR+K++ T
Sbjct: 813 NAGDEVLAVNGQACHELAHVEALALFKAVRSGTIELRVCRRIKNQST 859

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307190906|gb|EFN74730.1| PDZ domain-containing protein 2 [Camponotus floridanus]

 Score =  258 bits (659), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 140/283 (49%), Positives = 188/283 (66%), Gaps = 36/283 (12%)

Query: 402 LGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKS 461
           LGI+IAK   SS G    ++VAH+V  GLA+KEG L +GDEI+ VNG+RLRGL+M +A+ 
Sbjct: 506 LGIFIAKTSESSPG----YLVAHVVPNGLADKEGTLRIGDEILIVNGKRLRGLSMAEARK 561

Query: 462 IIS--SGPLNMDLLISRTSLKKSNAENEYNESHSREKKSKETRFSLDKQN-DFESSN--- 515
           I+   SGP ++D++ISR           Y++     KK KE+  S+D +N   E  +   
Sbjct: 562 ILGNGSGPGDVDIVISR-----------YSDVDQLAKKLKES--SVDYENVSMEDGHGVI 608

Query: 516 -EQDKNNQKRLFQKNCHSINNKLLRKAIISTGSISGDEEETILTST------NFCTLPRR 568
            E   ++  R  Q  CH            S  SIS D+  T + +T       FCTLPRR
Sbjct: 609 VESSPSSHFRKHQTRCHRDRKDE------SNRSISSDKFATNIDNTFAQNISKFCTLPRR 662

Query: 569 PRSAICTFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGD 628
           PR+ + TF T++FEKG GKK LGFTIVGG+DSP+G+IGIFIKS+L  GQAAEDGRL+ GD
Sbjct: 663 PRNTVSTFLTVLFEKGAGKKSLGFTIVGGRDSPKGSIGIFIKSVLPGGQAAEDGRLRAGD 722

Query: 629 EILAINGQVCHDLTHLEAISLFKTIKNGSISLHICRRLKSKKT 671
           EILA+NGQVCHDLTH EA+ LF+ IK+G ++LH+CRR+K++++
Sbjct: 723 EILAVNGQVCHDLTHREAVQLFRNIKSGPVALHLCRRVKNRES 765

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	671
FB|FBgn0000008	1329	a "arc" [Drosophila melanogast	0.147	0.074	0.535	6.6e-27
RGD|619958	2766	Pdzd2 "PDZ domain containing 2	0.396	0.096	0.336	2.8e-22
UNIPROTKB|F1NBK4	1141	F1NBK4 "Uncharacterized protei	0.132	0.078	0.6	6.8e-19
RGD|3105	2054	Mpdz "multiple PDZ domain prot	0.122	0.039	0.482	1.2e-18
MGI|MGI:1343489	2055	Mpdz "multiple PDZ domain prot	0.122	0.039	0.482	1.2e-18
UNIPROTKB|D4A2W4	2068	Mpdz "Multiple PDZ domain prot	0.122	0.039	0.482	1.3e-18
UNIPROTKB|F1MMT3	2056	F1MMT3 "Uncharacterized protei	0.122	0.039	0.458	1.7e-18
UNIPROTKB|O75970	2070	MPDZ "Multiple PDZ domain prot	0.122	0.039	0.470	2.1e-18
UNIPROTKB|F1SMP5	1588	MPDZ "Uncharacterized protein"	0.175	0.074	0.359	1.7e-17
UNIPROTKB|O15018	2839	PDZD2 "PDZ domain-containing p	0.274	0.064	0.355	1.3e-16

FB|FBgn0000008 a "arc" [Drosophila melanogaster (taxid:7227)]

 Score = 274 (101.5 bits), Expect = 6.6e-27, Sum P(3) = 6.6e-27
 Identities = 53/99 (53%), Positives = 69/99 (69%)

Query:   571 SAICTFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEI 630
             S  CT  TI F KGPG K LGF+IVGG+DSP+G +GIF+K++  +GQAA+DG L+ GDEI
Sbjct:  1225 SGRCTPKTITFFKGPGLKSLGFSIVGGRDSPKGNMGIFVKTVFPSGQAADDGTLQAGDEI 1284

Query:   631 LAINGQVCHDLTHLEAISLFKTIKNGSISLHICRRLKSK 669
             + ING     ++H E I LFK ++ G+I L I RR   K
Sbjct:  1285 VEINGNSVQGMSHAETIGLFKNVREGTIVLKILRRKLQK 1323

GO:0005912 "adherens junction" evidence=IDA

GO:0048749 "compound eye development" evidence=IMP

GO:0016324 "apical plasma membrane" evidence=IDA

GO:0003674 "molecular_function" evidence=ND

RGD|619958 Pdzd2 "PDZ domain containing 2" [Rattus norvegicus (taxid:10116)]

 Score = 300 (110.7 bits), Expect = 2.8e-22, Sum P(2) = 2.8e-22
 Identities = 97/288 (33%), Positives = 145/288 (50%)

Query:   399 NEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQ 458
             ++ LGI ++  + S        VV  +  GG A ++G L LGDE++ +NG  L GL+  +
Sbjct:   341 SDGLGIQVSGGRGSKRSP-HAIVVTQVKEGGAAHRDGRLSLGDELLVINGHLLVGLSHEE 399

Query:   459 AKSIISSGPLNMDLLI------SRTSLKKSNAENEYNESHSREK---KSK-ETRFS--LD 506
             A +I+ S    + L++      S  S    ++E       S ++   K+K ++R S  + 
Sbjct:   400 AVAILRSATGMVQLVVASKMPGSEESQDVGSSEESKGNLESPKQGNCKTKLKSRLSGGVH 459

Query:   507 KQNDFESSNE-QDKNNQKRLFQKNCHSINNK-LLRKAIISTGSISGD---EEETILTSTN 561
             +    E  NE   +N   R+          K  L + + STG+       ++ T   ST 
Sbjct:   460 RLESVEEYNELMVRNGDPRIRMLEVSRDGRKHSLPQLLDSTGTSQEYHIVKKSTRSLSTT 519

Query:   562 FCTLP-RRPRSAICTFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAE 620
                 P R  R ++ +   +  EKG   KGLGF+I GG+D  RG +GIF+K+I  NG AAE
Sbjct:   520 HVESPWRLIRPSVISIIGLYKEKG---KGLGFSIAGGRDCIRGQMGIFVKTIFPNGSAAE 576

Query:   621 DGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKNGSISLHICRRLKS 668
             DGRLKEGDEIL +NG     LT  EAI  FK I++G   L +  +L S
Sbjct:   577 DGRLKEGDEILDVNGIPIKGLTFQEAIHTFKQIRSGLFVLTVRTKLLS 624

GO:0005515 "protein binding" evidence=IPI

GO:0005576 "extracellular region" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IEA;ISO;ISS

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005911 "cell-cell junction" evidence=IDA

GO:0007155 "cell adhesion" evidence=IEA

GO:0014069 "postsynaptic density" evidence=IDA

GO:0035556 "intracellular signal transduction" evidence=TAS

GO:0043005 "neuron projection" evidence=IDA

GO:0045177 "apical part of cell" evidence=IDA

UNIPROTKB|F1NBK4 F1NBK4 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 263 (97.6 bits), Expect = 6.8e-19, P = 6.8e-19
 Identities = 54/90 (60%), Positives = 66/90 (73%)

Query:   579 IVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVC 638
             IV  KG GK GLGF+IVGG+DS RG +GIF+K+I  NG AA DGRLKEGDEIL +NG+  
Sbjct:    26 IVLMKGQGK-GLGFSIVGGQDSARGRMGIFVKTIFPNGAAAADGRLKEGDEILEVNGESL 84

Query:   639 HDLTHLEAISLFKTIKNGSISLHICRRLKS 668
               LTH EAI  FK +K G ++L +  RL+S
Sbjct:    85 QGLTHQEAIQRFKQLKKGVVTLTVRTRLRS 114

GO:0005737 "cytoplasm" evidence=IEA

RGD|3105 Mpdz "multiple PDZ domain protein" [Rattus norvegicus (taxid:10116)]

 Score = 211 (79.3 bits), Expect = 1.2e-18, Sum P(2) = 1.2e-18
 Identities = 41/85 (48%), Positives = 60/85 (70%)

Query:   578 TIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQV 637
             TI  ++GP   GLGF+IVGG  SP G + I++K++   G AAEDGRLK GD+I+A+NGQ 
Sbjct:  1971 TITLDRGPD--GLGFSIVGGYGSPHGDLPIYVKTVFAKGAAAEDGRLKRGDQIIAVNGQS 2028

Query:   638 CHDLTHLEAISLFKTIKNGSISLHI 662
                +TH EA+++ K  K G+++L +
Sbjct:  2029 LEGVTHEEAVAILKRTK-GTVTLMV 2052

GO:0005737 "cytoplasm" evidence=ISO

GO:0005923 "tight junction" evidence=IEA;ISO

GO:0007155 "cell adhesion" evidence=IEA;ISO

GO:0008022 "protein C-terminus binding" evidence=IEA;ISO

GO:0012505 "endomembrane system" evidence=IEA

GO:0014069 "postsynaptic density" evidence=IEA

GO:0016324 "apical plasma membrane" evidence=IEA;ISO

GO:0016327 "apicolateral plasma membrane" evidence=IEA;ISO

GO:0031410 "cytoplasmic vesicle" evidence=IEA;ISO

GO:0035556 "intracellular signal transduction" evidence=TAS

GO:0042552 "myelination" evidence=IPI

GO:0043220 "Schmidt-Lanterman incisure" evidence=IEA;ISO

GO:0045211 "postsynaptic membrane" evidence=IEA

MGI|MGI:1343489 Mpdz "multiple PDZ domain protein" [Mus musculus (taxid:10090)]

 Score = 211 (79.3 bits), Expect = 1.2e-18, Sum P(2) = 1.2e-18
 Identities = 41/85 (48%), Positives = 60/85 (70%)

Query:   578 TIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQV 637
             TI  ++GP   GLGF+IVGG  SP G + I++K++   G AAEDGRLK GD+I+A+NGQ 
Sbjct:  1972 TITLDRGPD--GLGFSIVGGYGSPHGDLPIYVKTVFAKGAAAEDGRLKRGDQIIAVNGQS 2029

Query:   638 CHDLTHLEAISLFKTIKNGSISLHI 662
                +TH EA+++ K  K G+++L +
Sbjct:  2030 LEGVTHEEAVAILKRTK-GTVTLMV 2053

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=ISO

GO:0005886 "plasma membrane" evidence=IEA

GO:0005923 "tight junction" evidence=IDA

GO:0007155 "cell adhesion" evidence=IDA

GO:0008022 "protein C-terminus binding" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0016324 "apical plasma membrane" evidence=IDA

GO:0016327 "apicolateral plasma membrane" evidence=ISO

GO:0030054 "cell junction" evidence=IEA

GO:0031410 "cytoplasmic vesicle" evidence=IDA

GO:0042552 "myelination" evidence=ISO

GO:0042995 "cell projection" evidence=IEA

GO:0043005 "neuron projection" evidence=IEA

GO:0043220 "Schmidt-Lanterman incisure" evidence=IDA

GO:0045202 "synapse" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

UNIPROTKB|D4A2W4 Mpdz "Multiple PDZ domain protein" [Rattus norvegicus (taxid:10116)]

 Score = 211 (79.3 bits), Expect = 1.3e-18, Sum P(2) = 1.3e-18
 Identities = 41/85 (48%), Positives = 60/85 (70%)

Query:   578 TIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQV 637
             TI  ++GP   GLGF+IVGG  SP G + I++K++   G AAEDGRLK GD+I+A+NGQ 
Sbjct:  1985 TITLDRGPD--GLGFSIVGGYGSPHGDLPIYVKTVFAKGAAAEDGRLKRGDQIIAVNGQS 2042

Query:   638 CHDLTHLEAISLFKTIKNGSISLHI 662
                +TH EA+++ K  K G+++L +
Sbjct:  2043 LEGVTHEEAVAILKRTK-GTVTLMV 2066

GO:0005923 "tight junction" evidence=IEA

GO:0007155 "cell adhesion" evidence=IEA

GO:0008022 "protein C-terminus binding" evidence=IEA

GO:0016324 "apical plasma membrane" evidence=IEA

GO:0016327 "apicolateral plasma membrane" evidence=IEA

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0043220 "Schmidt-Lanterman incisure" evidence=IEA

UNIPROTKB|F1MMT3 F1MMT3 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 204 (76.9 bits), Expect = 1.7e-18, Sum P(2) = 1.7e-18
 Identities = 39/85 (45%), Positives = 60/85 (70%)

Query:   578 TIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQV 637
             +I  ++GP   GLGF+IVGG  SP G + I++K++   G A+EDGRLK GD+I+A+NGQ 
Sbjct:  1973 SITLDRGPD--GLGFSIVGGYGSPHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQS 2030

Query:   638 CHDLTHLEAISLFKTIKNGSISLHI 662
                +TH EA+++ K  K G+++L +
Sbjct:  2031 LEGVTHEEAVAILKRTK-GTVTLMV 2054

GO:0043220 "Schmidt-Lanterman incisure" evidence=IEA

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0016327 "apicolateral plasma membrane" evidence=IEA

GO:0016324 "apical plasma membrane" evidence=IEA

GO:0008022 "protein C-terminus binding" evidence=IEA

GO:0007155 "cell adhesion" evidence=IEA

GO:0005923 "tight junction" evidence=IEA

UNIPROTKB|O75970 MPDZ "Multiple PDZ domain protein" [Homo sapiens (taxid:9606)]

 Score = 207 (77.9 bits), Expect = 2.1e-18, Sum P(2) = 2.1e-18
 Identities = 40/85 (47%), Positives = 60/85 (70%)

Query:   578 TIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQV 637
             +I  E+GP   GLGF+IVGG  SP G + I++K++   G A+EDGRLK GD+I+A+NGQ 
Sbjct:  1987 SITLERGPD--GLGFSIVGGYGSPHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQS 2044

Query:   638 CHDLTHLEAISLFKTIKNGSISLHI 662
                +TH EA+++ K  K G+++L +
Sbjct:  2045 LEGVTHEEAVAILKRTK-GTVTLMV 2068

GO:0019048 "virus-host interaction" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

GO:0007155 "cell adhesion" evidence=IEA

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0042552 "myelination" evidence=IEA

GO:0043220 "Schmidt-Lanterman incisure" evidence=IEA

GO:0005923 "tight junction" evidence=IEA

GO:0014069 "postsynaptic density" evidence=IEA

GO:0016324 "apical plasma membrane" evidence=IEA

GO:0008022 "protein C-terminus binding" evidence=IPI

GO:0016327 "apicolateral plasma membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|F1SMP5 MPDZ "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 205 (77.2 bits), Expect = 1.7e-17, Sum P(3) = 1.7e-17
 Identities = 46/128 (35%), Positives = 78/128 (60%)

Query:   542 IISTGSIS---GDEEETILTSTNFCTLPRRP--RSAICT--FHTIVFEKGPGKKGLGFTI 594
             +++ G +S   G ++E + +S +F  L      +  +      +I  ++GP   GLGF+I
Sbjct:  1462 VVAGGDVSVVTGHQQEPVTSSLSFTGLTSSSIFQDDVGPPQCKSITLDRGPD--GLGFSI 1519

Query:   595 VGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIK 654
             VGG  SP G + I++K++   G A+EDGRLK GD+I+A+NGQ    +TH EA+++ K  K
Sbjct:  1520 VGGYGSPHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRTK 1579

Query:   655 NGSISLHI 662
              G+++L +
Sbjct:  1580 -GTVTLMV 1586

GO:0043220 "Schmidt-Lanterman incisure" evidence=IEA

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0016327 "apicolateral plasma membrane" evidence=IEA

GO:0016324 "apical plasma membrane" evidence=IEA

GO:0008022 "protein C-terminus binding" evidence=IEA

GO:0007155 "cell adhesion" evidence=IEA

GO:0005923 "tight junction" evidence=IEA

UNIPROTKB|O15018 PDZD2 "PDZ domain-containing protein 2" [Homo sapiens (taxid:9606)]

 Score = 230 (86.0 bits), Expect = 1.3e-16, Sum P(2) = 1.3e-16
 Identities = 69/194 (35%), Positives = 98/194 (50%)

Query:   481 KSNAENEYNESHSREKKSKETRFSLDKQNDFESSNE-QDKNNQKRLFQKNCHSINNKLLR 539
             K N E+    S+  + KS+ +   + +    E  NE   +N   R+          K   
Sbjct:   486 KGNLESPKQGSNKIKLKSRLSG-GVHRLESVEEYNELMVRNGDPRIRMLEVSRDGRKHSL 544

Query:   540 KAIISTGSISGD----EEETILTSTNFCTLP-RRPRSAICTFHTIVFEKGPGKKGLGFTI 594
               ++ + S S +    ++ T   ST     P R  R ++ +   +  EKG   KGLGF+I
Sbjct:   545 PQLLDSSSASQEYHIVKKSTRSLSTTQVESPWRLIRPSVISIIGLYKEKG---KGLGFSI 601

Query:   595 VGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIK 654
              GG+D  RG +GIF+K+I  NG AAEDGRLKEGDEIL +NG     LT  EAI  FK I+
Sbjct:   602 AGGRDCIRGQMGIFVKTIFPNGSAAEDGRLKEGDEILDVNGIPIKGLTFQEAIHTFKQIR 661

Query:   655 NGSISLHICRRLKS 668
             +G   L +  +L S
Sbjct:   662 SGLFVLTVRTKLVS 675

GO:0007155 "cell adhesion" evidence=IEA

GO:0005634 "nucleus" evidence=ISS

GO:0005783 "endoplasmic reticulum" evidence=ISS

GO:0005737 "cytoplasm" evidence=IDA

GO:0005576 "extracellular region" evidence=ISS

GO:0005911 "cell-cell junction" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	671
cd00992	82	cd00992, PDZ_signaling, PDZ domain found in a vari	4e-21
smart00228	85	smart00228, PDZ, Domain present in PSD-95, Dlg, an	2e-18
cd00992	82	cd00992, PDZ_signaling, PDZ domain found in a vari	6e-13
pfam00595	80	pfam00595, PDZ, PDZ domain (Also known as DHR or G	1e-12
cd00136	70	cd00136, PDZ, PDZ domain, also called DHR (Dlg hom	7e-12
smart00228	85	smart00228, PDZ, Domain present in PSD-95, Dlg, an	4e-11
pfam00595	80	pfam00595, PDZ, PDZ domain (Also known as DHR or G	2e-07
cd00136	70	cd00136, PDZ, PDZ domain, also called DHR (Dlg hom	3e-06
cd00988	85	cd00988, PDZ_CTP_protease, PDZ domain of C-termina	5e-05
cd00989	79	cd00989, PDZ_metalloprotease, PDZ domain of bacter	7e-05
cd00988	85	cd00988, PDZ_CTP_protease, PDZ domain of C-termina	8e-05
cd00989	79	cd00989, PDZ_metalloprotease, PDZ domain of bacter	6e-04
pfam13180	81	pfam13180, PDZ_2, PDZ domain	6e-04
cd00987	90	cd00987, PDZ_serine_protease, PDZ domain of tryspi	0.001

>gnl|CDD|238492 cd00992, PDZ_signaling, PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements

 Score = 87.6 bits (218), Expect = 4e-21
 Identities = 35/87 (40%), Positives = 47/87 (54%), Gaps = 6/87 (6%)

Query: 577 HTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQ 636
            T+   K PG  GLGF++ GGKDS  G   IF+  +   G  AE G L+ GD IL +NG 
Sbjct: 2   RTVTLRKDPGG-GLGFSLRGGKDSGGG---IFVSRVEPGG-PAERGGLRVGDRILEVNGV 56

Query: 637 VCHDLTHLEAISLFKTIKNGSISLHIC 663
               LTH EA+ L K   +  ++L + 
Sbjct: 57  SVEGLTHEEAVELLKNSGD-EVTLTVR 82

May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases. Length = 82

>gnl|CDD|214570 smart00228, PDZ, Domain present in PSD-95, Dlg, and ZO-1/2

 Score = 80.1 bits (198), Expect = 2e-18
 Identities = 36/89 (40%), Positives = 50/89 (56%), Gaps = 7/89 (7%)

Query: 577 HTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQ 636
             +  EKG G  GLGF++VGGKD   G   + + S++    AA+ G L+ GD IL +NG 
Sbjct: 3   RLVELEKGGG--GLGFSLVGGKDEGGG---VVVSSVVPGSPAAKAG-LRVGDVILEVNGT 56

Query: 637 VCHDLTHLEAISLFKTIKNGSISLHICRR 665
               LTHLEA+ L K    G ++L + R 
Sbjct: 57  SVEGLTHLEAVDLLKKAG-GKVTLTVLRG 84

Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities. Length = 85

>gnl|CDD|238492 cd00992, PDZ_signaling, PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements

 Score = 64.5 bits (158), Expect = 6e-13
 Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 5/80 (6%)

Query: 395 RRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGL 454
           R+D    LG  +   K+S     GG  V+ +  GG AE+ G L +GD I+ VNG  + GL
Sbjct: 7   RKDPGGGLGFSLRGGKDSG----GGIFVSRVEPGGPAER-GGLRVGDRILEVNGVSVEGL 61

Query: 455 TMTQAKSIISSGPLNMDLLI 474
           T  +A  ++ +    + L +
Sbjct: 62  THEEAVELLKNSGDEVTLTV 81

May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases. Length = 82

>gnl|CDD|201332 pfam00595, PDZ, PDZ domain (Also known as DHR or GLGF)

 Score = 63.4 bits (155), Expect = 1e-12
 Identities = 39/85 (45%), Positives = 52/85 (61%), Gaps = 6/85 (7%)

Query: 578 TIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQV 637
            +  EK  G+ GLGF++VGG D   G  GIF+  +L  G AAE G L+EGD IL+INGQ 
Sbjct: 1   EVTLEK-SGRGGLGFSLVGGSD---GDPGIFVSEVLPGG-AAEAGGLQEGDRILSINGQD 55

Query: 638 CHDLTHLEAISLFKTIKNGSISLHI 662
             +L+H EA+ L      G ++L I
Sbjct: 56  LENLSHDEAV-LALKGSGGEVTLTI 79

PDZ domains are found in diverse signaling proteins. Length = 80

>gnl|CDD|238080 cd00136, PDZ, PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif)

 Score = 60.8 bits (148), Expect = 7e-12
 Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 6/75 (8%)

Query: 588 KGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAI 647
            GLGF+I GG +      G+ + S+     A   G L+ GD ILA+NG    +LT  +  
Sbjct: 1   GGLGFSIRGGTEG-----GVVVLSVEPGSPAERAG-LQAGDVILAVNGTDVKNLTLEDVA 54

Query: 648 SLFKTIKNGSISLHI 662
            L K      ++L +
Sbjct: 55  ELLKKEVGEKVTLTV 69

Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(post synaptic density protein), DlgA (Drosophila disc large tumor suppressor), and ZO1, a mammalian tight junction protein. Length = 70

>gnl|CDD|214570 smart00228, PDZ, Domain present in PSD-95, Dlg, and ZO-1/2

 Score = 59.3 bits (144), Expect = 4e-11
 Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 7/86 (8%)

Query: 391 VRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQR 450
           V + +      LG  +   K+      GG VV+ +V G  A K G L +GD I+ VNG  
Sbjct: 5   VELEKGG--GGLGFSLVGGKD----EGGGVVVSSVVPGSPAAKAG-LRVGDVILEVNGTS 57

Query: 451 LRGLTMTQAKSIISSGPLNMDLLISR 476
           + GLT  +A  ++      + L + R
Sbjct: 58  VEGLTHLEAVDLLKKAGGKVTLTVLR 83

Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities. Length = 85

>gnl|CDD|201332 pfam00595, PDZ, PDZ domain (Also known as DHR or GLGF)

 Score = 48.4 bits (116), Expect = 2e-07
 Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 5/76 (6%)

Query: 399 NEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQ 458
              LG     +   S+G+ G FV + ++ GG AE  G L+ GD I+S+NGQ L  L+  +
Sbjct: 9   RGGLGF---SLVGGSDGDPGIFV-SEVLPGGAAEAGG-LQEGDRILSINGQDLENLSHDE 63

Query: 459 AKSIISSGPLNMDLLI 474
           A   +      + L I
Sbjct: 64  AVLALKGSGGEVTLTI 79

PDZ domains are found in diverse signaling proteins. Length = 80

>gnl|CDD|238080 cd00136, PDZ, PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif)

 Score = 45.0 bits (107), Expect = 3e-06
 Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 7/63 (11%)

Query: 401 ELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAK 460
            LG  I        G  GG VV  +  G  AE+ G L+ GD I++VNG  ++ LT+    
Sbjct: 2   GLGFSIRG------GTEGGVVVLSVEPGSPAERAG-LQAGDVILAVNGTDVKNLTLEDVA 54

Query: 461 SII 463
            ++
Sbjct: 55  ELL 57

Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(post synaptic density protein), DlgA (Drosophila disc large tumor suppressor), and ZO1, a mammalian tight junction protein. Length = 70

>gnl|CDD|238488 cd00988, PDZ_CTP_protease, PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts

 Score = 41.8 bits (99), Expect = 5e-05
 Identities = 14/58 (24%), Positives = 30/58 (51%), Gaps = 8/58 (13%)

Query: 402 LGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQA 459
           +G+ +           GG V+  ++ G  A K G ++ GD I++++G+ + GL++   
Sbjct: 4   IGLELKYDD-------GGLVITSVLPGSPAAKAG-IKAGDIIVAIDGEPVDGLSLEDV 53

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins. Length = 85

>gnl|CDD|238489 cd00989, PDZ_metalloprotease, PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms

 Score = 41.5 bits (98), Expect = 7e-05
 Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 4/57 (7%)

Query: 421 VVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGP-LNMDLLISR 476
           V+  +V G  A K G L+ GD I+++NGQ+++  +       +   P   + L + R
Sbjct: 15  VIGEVVPGSPAAKAG-LKAGDRILAINGQKIK--SWEDLVDAVQENPGKPLTLTVER 68

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins. Length = 79

>gnl|CDD|238488 cd00988, PDZ_CTP_protease, PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts

 Score = 41.4 bits (98), Expect = 8e-05
 Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 1/46 (2%)

Query: 606 GIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFK 651
           G+ I S+L    AA+ G +K GD I+AI+G+    L+  + + L +
Sbjct: 14  GLVITSVLPGSPAAKAG-IKAGDIIVAIDGEPVDGLSLEDVVKLLR 58

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins. Length = 85

>gnl|CDD|238489 cd00989, PDZ_metalloprotease, PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms

 Score = 38.8 bits (91), Expect = 6e-04
 Identities = 20/48 (41%), Positives = 23/48 (47%), Gaps = 7/48 (14%)

Query: 589 GLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQ 636
            LGF   G    P       I  ++    AA+ G LK GD ILAINGQ
Sbjct: 2   ILGFVPGGPPIEPV------IGEVVPGSPAAKAG-LKAGDRILAINGQ 42

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins. Length = 79

>gnl|CDD|221961 pfam13180, PDZ_2, PDZ domain

 Score = 38.8 bits (91), Expect = 6e-04
 Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 6/65 (9%)

Query: 589 GLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAIS 648
            +G  +V          G+ + S+ +   AA+ G LK GD IL+I+G+  + LT L  + 
Sbjct: 2   DIGVRVV-----QNEGTGVTVVSVKEGSPAAKAG-LKPGDIILSIDGKKVNSLTELIEVI 55

Query: 649 LFKTI 653
           L    
Sbjct: 56  LNGKP 60

Length = 81

>gnl|CDD|238487 cd00987, PDZ_serine_protease, PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis

 Score = 38.0 bits (89), Expect = 0.001
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 2/59 (3%)

Query: 606 GIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKNGSISLHICR 664
           G+ + S+     AA+ G LK GD ILA+NG+    +  L    L +      ++L + R
Sbjct: 25  GVLVASVDPGSPAAKAG-LKPGDVILAVNGKPVKSVADLRRA-LAELKPGDKVTLTVLR 81

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins. Length = 90

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	671
KOG3209|consensus	984		99.92
KOG3209|consensus	984		99.87
KOG3580|consensus	1027		99.8
KOG3580|consensus	1027		99.78
PRK10139	455	serine endoprotease; Provisional	99.57
KOG3605|consensus	829		99.57
TIGR02037	428	degP_htrA_DO periplasmic serine protease, Do/DeqQ	99.55
PRK10942	473	serine endoprotease; Provisional	99.55
KOG3571|consensus	626		99.54
PF00595	81	PDZ: PDZ domain (Also known as DHR or GLGF) Coordi	99.44
PRK10779	449	zinc metallopeptidase RseP; Provisional	99.43
PF00595	81	PDZ: PDZ domain (Also known as DHR or GLGF) Coordi	99.34
KOG3550|consensus	207		99.28
TIGR00054	420	RIP metalloprotease RseP. A model that detects fra	99.27
KOG3550|consensus	207		99.13
KOG3549|consensus	505		99.02
cd00992	82	PDZ_signaling PDZ domain found in a variety of Eum	99.0
cd00136	70	PDZ PDZ domain, also called DHR (Dlg homologous re	98.98
smart00228	85	PDZ Domain present in PSD-95, Dlg, and ZO-1/2. Als	98.93
KOG3551|consensus	506		98.91
KOG3551|consensus	506		98.91
KOG3549|consensus	505		98.89
cd00992	82	PDZ_signaling PDZ domain found in a variety of Eum	98.88
PF13180	82	PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_	98.86
smart00228	85	PDZ Domain present in PSD-95, Dlg, and ZO-1/2. Als	98.85
KOG3553|consensus	124		98.83
KOG1892|consensus	1629		98.78
cd00136	70	PDZ PDZ domain, also called DHR (Dlg homologous re	98.75
cd00988	85	PDZ_CTP_protease PDZ domain of C-terminal processi	98.74
KOG3571|consensus	626		98.71
PF13180	82	PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_	98.66
KOG1892|consensus	1629		98.64
KOG3553|consensus	124		98.57
KOG3606|consensus	358		98.52
cd00988	85	PDZ_CTP_protease PDZ domain of C-terminal processi	98.5
KOG3552|consensus	1298		98.49
cd00989	79	PDZ_metalloprotease PDZ domain of bacterial and pl	98.47
cd00991	79	PDZ_archaeal_metalloprotease PDZ domain of archaea	98.46
cd00990	80	PDZ_glycyl_aminopeptidase PDZ domain associated wi	98.35
cd00986	79	PDZ_LON_protease PDZ domain of ATP-dependent LON s	98.28
KOG3651|consensus	429		98.26
cd00987	90	PDZ_serine_protease PDZ domain of tryspin-like ser	98.25
KOG0609|consensus	542		98.22
KOG3651|consensus	429		98.21
PLN00049	389	carboxyl-terminal processing protease; Provisional	98.21
KOG3542|consensus	1283		98.18
cd00990	80	PDZ_glycyl_aminopeptidase PDZ domain associated wi	98.18
TIGR00225	334	prc C-terminal peptidase (prc). A C-terminal pepti	98.17
KOG3552|consensus	1298		98.15
cd00991	79	PDZ_archaeal_metalloprotease PDZ domain of archaea	98.15
COG0793	406	Prc Periplasmic protease [Cell envelope biogenesis	98.15
KOG3606|consensus	358		98.14
KOG4371|consensus	1332		98.1
cd00989	79	PDZ_metalloprotease PDZ domain of bacterial and pl	98.06
KOG3605|consensus	829		98.02
PRK11186	667	carboxy-terminal protease; Provisional	97.95
KOG0609|consensus	542		97.93
TIGR00225	334	prc C-terminal peptidase (prc). A C-terminal pepti	97.92
PLN00049	389	carboxyl-terminal processing protease; Provisional	97.91
cd00987	90	PDZ_serine_protease PDZ domain of tryspin-like ser	97.9
KOG3542|consensus	1283		97.88
TIGR01713	259	typeII_sec_gspC general secretion pathway protein	97.87
COG0793	406	Prc Periplasmic protease [Cell envelope biogenesis	97.82
cd00986	79	PDZ_LON_protease PDZ domain of ATP-dependent LON s	97.79
PRK10139	455	serine endoprotease; Provisional	97.72
TIGR02038	351	protease_degS periplasmic serine pepetdase DegS. T	97.72
TIGR02037	428	degP_htrA_DO periplasmic serine protease, Do/DeqQ	97.67
PRK10898	353	serine endoprotease; Provisional	97.65
PRK11186	667	carboxy-terminal protease; Provisional	97.64
PRK10898	353	serine endoprotease; Provisional	97.63
TIGR02038	351	protease_degS periplasmic serine pepetdase DegS. T	97.6
TIGR01713	259	typeII_sec_gspC general secretion pathway protein	97.55
PRK10942	473	serine endoprotease; Provisional	97.54
TIGR02860	402	spore_IV_B stage IV sporulation protein B. SpoIVB,	97.37
PRK10779	449	zinc metallopeptidase RseP; Provisional	97.36
PF04495	138	GRASP55_65: GRASP55/65 PDZ-like domain ; InterPro:	97.31
TIGR00054	420	RIP metalloprotease RseP. A model that detects fra	97.19
KOG3938|consensus	334		97.17
PF04495	138	GRASP55_65: GRASP55/65 PDZ-like domain ; InterPro:	97.17
KOG3834|consensus	462		96.94
PF14685	88	Tricorn_PDZ: Tricorn protease PDZ domain; PDB: 1N6	96.89
COG0265	347	DegQ Trypsin-like serine proteases, typically peri	96.88
KOG3938|consensus	334		96.83
KOG1421|consensus	955		96.78
KOG0606|consensus	1205		96.63
KOG1421|consensus	955		96.39
TIGR02860	402	spore_IV_B stage IV sporulation protein B. SpoIVB,	96.29
KOG4407|consensus	1973		96.28
COG0265	347	DegQ Trypsin-like serine proteases, typically peri	96.23
TIGR03279	433	cyano_FeS_chp putative FeS-containing Cyanobacteri	96.22
PF14685	88	Tricorn_PDZ: Tricorn protease PDZ domain; PDB: 1N6	96.2
KOG3532|consensus	1051		96.02
KOG1738|consensus	638		96.0
TIGR03279	433	cyano_FeS_chp putative FeS-containing Cyanobacteri	95.99
KOG3129|consensus	231		95.75
COG3975	558	Predicted protease with the C-terminal PDZ domain	95.66
COG3975	558	Predicted protease with the C-terminal PDZ domain	95.56
KOG1738|consensus	638		95.52
KOG3129|consensus	231		95.43
PRK09681	276	putative type II secretion protein GspC; Provision	95.21
KOG0606|consensus	1205		95.18
COG3480	342	SdrC Predicted secreted protein containing a PDZ d	94.71
COG3031	275	PulC Type II secretory pathway, component PulC [In	93.95
KOG3532|consensus	1051		93.82
PRK09681	276	putative type II secretion protein GspC; Provision	93.79
KOG1320|consensus	473		93.52
PF12812	78	PDZ_1: PDZ-like domain	92.24
COG3480	342	SdrC Predicted secreted protein containing a PDZ d	92.1
KOG4371|consensus	1332		90.18
KOG1320|consensus	473		89.84
COG3031	275	PulC Type II secretory pathway, component PulC [In	89.37
COG0750	375	Predicted membrane-associated Zn-dependent proteas	85.35

>KOG3209|consensus

Probab=99.92  E-value=3.1e-24  Score=238.11  Aligned_cols=231  Identities=28%  Similarity=0.389  Sum_probs=157.7

Q ss_pred             CCCeEEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHh
Q psy1156         385 QEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIIS  464 (671)
Q Consensus       385 ~~~~~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~  464 (671)
                      ..+...|.|.+. .+++|||.|......+     +.-|.+|.+||||+++|+|++||+|++|||+++..++|.+.+.+++
T Consensus       751 ~~~~yDV~lhR~-ENeGFGFVi~sS~~kp-----~sgiGrIieGSPAdRCgkLkVGDrilAVNG~sI~~lsHadiv~LIK  824 (984)
T KOG3209|consen  751 PSGPYDVVLHRK-ENEGFGFVIMSSQNKP-----ESGIGRIIEGSPADRCGKLKVGDRILAVNGQSILNLSHADIVSLIK  824 (984)
T ss_pred             CCCCeeeEEecc-cCCceeEEEEecccCC-----CCCccccccCChhHhhccccccceEEEecCeeeeccCchhHHHHHH
Confidence            345678999874 5799999999776543     3339999999999999999999999999999999999999999999


Q ss_pred             cCCCeEEEEEEeCCcccccccccccccccccccccccccccccCCcccCCcccchhhhhhhccccccccchhhhhhcccc
Q psy1156         465 SGPLNMDLLISRTSLKKSNAENEYNESHSREKKSKETRFSLDKQNDFESSNEQDKNNQKRLFQKNCHSINNKLLRKAIIS  544 (671)
Q Consensus       465 ~~g~~V~L~V~R~~~~~~~a~~~~~~~~s~~~~~~~~~ss~d~e~~~~ssp~~~k~s~~~~~q~~~~s~~~~~~r~~v~s  544 (671)
                      .+|-.|+|+|.-.........     ..+.++.+.+....+..++              ...+...++...++       
T Consensus       825 daGlsVtLtIip~ee~~~~~~-----~~sa~~~s~~t~~~~~~q~--------------~glp~~~~s~~~~~-------  878 (984)
T KOG3209|consen  825 DAGLSVTLTIIPPEEAGPPTS-----MTSAEKQSPFTQNGPYEQQ--------------YGLPGPRPSVYEEH-------  878 (984)
T ss_pred             hcCceEEEEEcChhccCCCCC-----CcchhhcCcccccCCHhHc--------------cCCCCCCccccccC-------
Confidence            999999999976443211100     0000111111110000000              00000000000000       


Q ss_pred             cCCCCCchhhhhhccCCccCCCCCCCCcccceeeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCC
Q psy1156         545 TGSISGDEEETILTSTNFCTLPRRPRSAICTFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRL  624 (671)
Q Consensus       545 ~~s~s~d~~~s~~~s~~~~~lP~~p~s~~~~~~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrL  624 (671)
                        . .++...-        ..-.........+++|+|+|+.  .+|||+|+||...   .+++||-+++++|||.++|+|
T Consensus       879 --p-qpdt~~~--------~~~~~r~~qn~~~~~VelErG~--kGFGFSiRGGrey---nM~LfVLRlAeDGPA~rdGrm  942 (984)
T KOG3209|consen  879 --P-QPDTFQG--------LSINDRMSQNGDLYTVELERGA--KGFGFSIRGGREY---NMDLFVLRLAEDGPAIRDGRM  942 (984)
T ss_pred             --C-CCccccc--------eeccccccccCCeeEEEeeccc--cccceEeeccccc---ccceEEEEeccCCCccccCce
Confidence              0 0000000        0000111233467899999997  8999999999654   589999999999999999999


Q ss_pred             CCCCEEEEECCeecCCCCHHHHHHHHHhcCCCcEEEEEEe
Q psy1156         625 KEGDEILAINGQVCHDLTHLEAISLFKTIKNGSISLHICR  664 (671)
Q Consensus       625 r~GDrILeVNG~sV~~lSheEAV~lLK~sg~~~VtL~V~R  664 (671)
                      ++||+|++|||++..+|+|..|+++||+-+ ..|.|++.|
T Consensus       943 ~VGDqi~eINGesTkgmtH~rAIelIk~gg-~~vll~Lr~  981 (984)
T KOG3209|consen  943 RVGDQITEINGESTKGMTHDRAIELIKQGG-RRVLLLLRR  981 (984)
T ss_pred             eecceEEEecCcccCCCcHHHHHHHHHhCC-eEEEEEecc
Confidence            999999999999999999999999999854 344444443

>KOG3209|consensus

Probab=99.87  E-value=3.6e-21  Score=213.96  Aligned_cols=187  Identities=26%  Similarity=0.405  Sum_probs=152.6

Q ss_pred             CeEEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHh--
Q psy1156         387 GQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIIS--  464 (671)
Q Consensus       387 ~~~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~--  464 (671)
                      ....|-|.+..  -+|||.|-||.+..    ..|+|..|++.|+|+..|+|+.||+|+.|+|++|.+.+|.+++.+|.  
T Consensus       649 k~ldV~L~rke--sGFGFRiLGG~ep~----qpi~iG~Iv~lGaAe~DGRL~~gDElv~iDG~pV~GksH~~vv~Lm~~A  722 (984)
T KOG3209|consen  649 KELDVFLRRKE--SGFGFRILGGDEPG----QPIYIGAIVPLGAAEEDGRLREGDELVCIDGIPVEGKSHSEVVDLMEAA  722 (984)
T ss_pred             cceeEEEEeec--cccceEEecCCCCC----CeeEEeeeeecccccccCcccCCCeEEEecCeeccCccHHHHHHHHHHH
Confidence            55778888754  79999999998765    78999999999999999999999999999999999999999999998  


Q ss_pred             cCCCeEEEEEEeCCcccccccccccccccccccccccccccccCCcccCCcccchhhhhhhccccccccchhhhhhcccc
Q psy1156         465 SGPLNMDLLISRTSLKKSNAENEYNESHSREKKSKETRFSLDKQNDFESSNEQDKNNQKRLFQKNCHSINNKLLRKAIIS  544 (671)
Q Consensus       465 ~~g~~V~L~V~R~~~~~~~a~~~~~~~~s~~~~~~~~~ss~d~e~~~~ssp~~~k~s~~~~~q~~~~s~~~~~~r~~v~s  544 (671)
                      ...+.|.|+|.|.......                 .           .+|.                            
T Consensus       723 ArnghV~LtVRRkv~~~~~-----------------~-----------rsp~----------------------------  746 (984)
T KOG3209|consen  723 ARNGHVNLTVRRKVRTGPA-----------------R-----------RSPR----------------------------  746 (984)
T ss_pred             HhcCceEEEEeeeeeeccc-----------------c-----------CCcc----------------------------
Confidence            3468899999885431100                 0           0000                            


Q ss_pred             cCCCCCchhhhhhccCCccCCCCCCCCcccceeeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCC
Q psy1156         545 TGSISGDEEETILTSTNFCTLPRRPRSAICTFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRL  624 (671)
Q Consensus       545 ~~s~s~d~~~s~~~s~~~~~lP~~p~s~~~~~~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrL  624 (671)
                           .+                   ........|.|.+.. .++|||.|......+.    --|..|.+||||+++|+|
T Consensus       747 -----~s-------------------~~~~~~yDV~lhR~E-NeGFGFVi~sS~~kp~----sgiGrIieGSPAdRCgkL  797 (984)
T KOG3209|consen  747 -----NS-------------------AAPSGPYDVVLHRKE-NEGFGFVIMSSQNKPE----SGIGRIIEGSPADRCGKL  797 (984)
T ss_pred             -----cc-------------------cCCCCCeeeEEeccc-CCceeEEEEecccCCC----CCccccccCChhHhhccc
Confidence                 00                   000113578898886 6999999988877652    238999999999999999


Q ss_pred             CCCCEEEEECCeecCCCCHHHHHHHHHhcCCCcEEEEEEeC
Q psy1156         625 KEGDEILAINGQVCHDLTHLEAISLFKTIKNGSISLHICRR  665 (671)
Q Consensus       625 r~GDrILeVNG~sV~~lSheEAV~lLK~sg~~~VtL~V~Rr  665 (671)
                      ++||+|++|||+++.+++|.++|.+||.++ -+|+|+|.-.
T Consensus       798 kVGDrilAVNG~sI~~lsHadiv~LIKdaG-lsVtLtIip~  837 (984)
T KOG3209|consen  798 KVGDRILAVNGQSILNLSHADIVSLIKDAG-LSVTLTIIPP  837 (984)
T ss_pred             cccceEEEecCeeeeccCchhHHHHHHhcC-ceEEEEEcCh
Confidence            999999999999999999999999999996 8999998654

>KOG3580|consensus

Probab=99.80  E-value=6.6e-19  Score=192.95  Aligned_cols=260  Identities=22%  Similarity=0.306  Sum_probs=163.4

Q ss_pred             CeEEEEEEeCCCCCcccEEEeeecCCCCCC--cCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHh
Q psy1156         387 GQTMVRVNRRDFNEELGIYIAKIKNSSEGN--IGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIIS  464 (671)
Q Consensus       387 ~~~~V~L~k~~~~~~LGfsI~gg~~~~~g~--~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~  464 (671)
                      +.++|+|.| ++..+|||.|.||.+++.+.  ..-|+|+.|.|||||+  |+|+.||.|+.|||++++++.|..|++.|+
T Consensus         8 EQhTvTL~k-dp~rGFGIAiSGGRDnPhf~~getSiViSDVlpGGPAe--G~LQenDrvvMVNGvsMenv~haFAvQqLr   84 (1027)
T KOG3580|consen    8 EQHTVTLQK-DPKRGFGIAISGGRDNPHFENGETSIVISDVLPGGPAE--GLLQENDRVVMVNGVSMENVLHAFAVQQLR   84 (1027)
T ss_pred             hhheeeeec-CCCCcceeEeecCCCCCCccCCceeEEEeeccCCCCcc--cccccCCeEEEEcCcchhhhHHHHHHHHHH
Confidence            457899998 46899999999999987442  2569999999999996  999999999999999999999999999999


Q ss_pred             cCCCeEEEEEEeCCccccccccccccc-cccccc-ccccccccccCCcccCCcccc--hhhhhhhccccccccc---hhh
Q psy1156         465 SGPLNMDLLISRTSLKKSNAENEYNES-HSREKK-SKETRFSLDKQNDFESSNEQD--KNNQKRLFQKNCHSIN---NKL  537 (671)
Q Consensus       465 ~~g~~V~L~V~R~~~~~~~a~~~~~~~-~s~~~~-~~~~~ss~d~e~~~~ssp~~~--k~s~~~~~q~~~~s~~---~~~  537 (671)
                      .++....++|.|..+....+.. ..++ .+.... ..+..+....   ..+.....  -+++-... ..+...+   .+.
T Consensus        85 ksgK~A~ItvkRprkvqvpa~~-asPp~s~~~r~~~ded~~d~Rs---~rsg~~~r~~~~s~~grs-rsw~~~~er~rP~  159 (1027)
T KOG3580|consen   85 KSGKVAAITVKRPRKVQVPALQ-ASPPLSQDDRAFEDEDEFDGRS---FRSGYSERSRLNSHGGRS-RSWEDSPERGRPH  159 (1027)
T ss_pred             hhccceeEEecccceeeccccC-CCCCCCCccccccchhccCccc---ccccccccccccccCCcc-cccccccccCCcc
Confidence            9999999999987776544211 1111 000000 0000000000   00000000  00000000 0000000   000


Q ss_pred             hhhcccccCCCCCchhh----hhhccCCccCCCCCCCCcccceeeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeC
Q psy1156         538 LRKAIISTGSISGDEEE----TILTSTNFCTLPRRPRSAICTFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSIL  613 (671)
Q Consensus       538 ~r~~v~s~~s~s~d~~~----s~~~s~~~~~lP~~p~s~~~~~~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~  613 (671)
                      .+.. ......+.+.-.    ...........|. |+ .......|.|.|....+.+|+.|..         -|||+.|.
T Consensus       160 ~R~r-srer~ls~~~~gprs~~r~~~ss~~~~p~-p~-~~~~p~kv~LvKsR~nEEyGlrLgS---------qIFvKeit  227 (1027)
T KOG3580|consen  160 ERAR-SRERDLSRDRRGPRSRSREHPSSRSPSPE-PR-GRPGPIKVLLVKSRANEEYGLRLGS---------QIFVKEIT  227 (1027)
T ss_pred             cccc-ccccccccCCCCCcccccccccCCCCCCC-cc-CCCCcceEEEEeeccchhhcccccc---------hhhhhhhc
Confidence            0000 000000000000    0000011111211 11 1123356778877777899998842         48999999


Q ss_pred             CCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcCCCcEEEEEEeCCC
Q psy1156         614 DNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKNGSISLHICRRLK  667 (671)
Q Consensus       614 pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg~~~VtL~V~Rr~~  667 (671)
                      ..|.|+++|.|+.||+||+|||+...+|++.++..+|.++ .+.+.|+|+|+..
T Consensus       228 ~~gLAardgnlqEGDiiLkINGtvteNmSLtDar~LIEkS-~GKL~lvVlRD~~  280 (1027)
T KOG3580|consen  228 RTGLAARDGNLQEGDIILKINGTVTENMSLTDARKLIEKS-RGKLQLVVLRDSQ  280 (1027)
T ss_pred             ccchhhccCCcccccEEEEECcEeeccccchhHHHHHHhc-cCceEEEEEecCC
Confidence            9999999999999999999999999999999999999998 4899999999864

>KOG3580|consensus

Probab=99.78  E-value=2.9e-18  Score=188.02  Aligned_cols=261  Identities=25%  Similarity=0.400  Sum_probs=160.2

Q ss_pred             CCeEEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhc
Q psy1156         386 EGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISS  465 (671)
Q Consensus       386 ~~~~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~  465 (671)
                      .+...|.|+|....+.||+.+.          .-|||..|...|.|++.|.|+.||+||.|||...++++..++..+|..
T Consensus       197 ~~p~kv~LvKsR~nEEyGlrLg----------SqIFvKeit~~gLAardgnlqEGDiiLkINGtvteNmSLtDar~LIEk  266 (1027)
T KOG3580|consen  197 PGPIKVLLVKSRANEEYGLRLG----------SQIFVKEITRTGLAARDGNLQEGDIILKINGTVTENMSLTDARKLIEK  266 (1027)
T ss_pred             CCcceEEEEeeccchhhccccc----------chhhhhhhcccchhhccCCcccccEEEEECcEeeccccchhHHHHHHh
Confidence            3556788999777899999887          569999999999999999999999999999999999999999999999


Q ss_pred             CCCeEEEEEEeCCcccccccccccccccc----cccccc--cccccccCCcccCCcccchhhhhhhccccc-cccchhhh
Q psy1156         466 GPLNMDLLISRTSLKKSNAENEYNESHSR----EKKSKE--TRFSLDKQNDFESSNEQDKNNQKRLFQKNC-HSINNKLL  538 (671)
Q Consensus       466 ~g~~V~L~V~R~~~~~~~a~~~~~~~~s~----~~~~~~--~~ss~d~e~~~~ssp~~~k~s~~~~~q~~~-~s~~~~~~  538 (671)
                      +.+.+.|+|+|+........+......+.    +....+  +.+++.....-..++..+..+...+.++.. ...+....
T Consensus       267 S~GKL~lvVlRD~~qtLiNiP~l~d~dSe~~disEi~tms~rs~spp~rrs~~~s~d~~s~s~h~p~~Ps~r~~~~~R~s  346 (1027)
T KOG3580|consen  267 SRGKLQLVVLRDSQQTLINIPSLNDSDSEIEDISEIETMSDRSFSPPERRSQYSSYDYHSSSEHLPERPSSREDTPSRLS  346 (1027)
T ss_pred             ccCceEEEEEecCCceeeecCCCccccccccchhhhhccccccCCCchhhhhccCccccCchhcCCCCCCccccchhhcc
Confidence            99999999999876544322211110000    000000  001111000000000000000000000000 00000000


Q ss_pred             hhccccc-CCCCCchhhhhhc----cCC---ccCCCCC---CC-------------CcccceeeEEEeeCCCCCcccEEE
Q psy1156         539 RKAIIST-GSISGDEEETILT----STN---FCTLPRR---PR-------------SAICTFHTIVFEKGPGKKGLGFTI  594 (671)
Q Consensus       539 r~~v~s~-~s~s~d~~~s~~~----s~~---~~~lP~~---p~-------------s~~~~~~~V~L~K~~g~~~LGfsL  594 (671)
                      +....++ .-...+.......    ...   ...+|..   ++             ......+.|.+.|+   ..+|+.|
T Consensus       347 ~~gat~tPvks~~d~~~~~V~e~t~e~~~~q~p~lP~pk~~~~~~~~pS~~~m~~ygysP~tk~VrF~KG---dSvGLRL  423 (1027)
T KOG3580|consen  347 RMGATPTPVKSTGDIAGTVVPETTKEPRYQQEPPLPQPKAAPRTFLRPSPEDMAIYGYSPNTKMVRFKKG---DSVGLRL  423 (1027)
T ss_pred             cCCCCCCCccCccccCCccccccccCcccccCCCCCCcccCcceeeecCHHHHHHhcCCCCceeEEeecC---CeeeeEe
Confidence            0000000 0000000000000    000   0111111   00             11234567888887   5899999


Q ss_pred             ecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcCCC-cEEEEEEeC
Q psy1156         595 VGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKNG-SISLHICRR  665 (671)
Q Consensus       595 ~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg~~-~VtL~V~Rr  665 (671)
                      +||++     .||||..|.+|+||++.| |+.||+||.||.++++++..++||..|-..+.+ .|+|+-+++
T Consensus       424 AGGND-----VGIFVaGvqegspA~~eG-lqEGDQIL~VN~vdF~nl~REeAVlfLL~lPkGEevtilaQ~k  489 (1027)
T KOG3580|consen  424 AGGND-----VGIFVAGVQEGSPAEQEG-LQEGDQILKVNTVDFRNLVREEAVLFLLELPKGEEVTILAQSK  489 (1027)
T ss_pred             ccCCc-----eeEEEeecccCCchhhcc-ccccceeEEeccccchhhhHHHHHHHHhcCCCCcEEeehhhhh
Confidence            99998     599999999999999999 999999999999999999999999999988754 477766554

>PRK10139 serine endoprotease; Provisional

Probab=99.57  E-value=3.4e-14  Score=158.73  Aligned_cols=196  Identities=20%  Similarity=0.270  Sum_probs=131.8

Q ss_pred             ccccchhccccCCCCCCCCeEEEEEEeCC--CCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEcc
Q psy1156         369 SMMEISELSSENSEDSQEGQTMVRVNRRD--FNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISV  446 (671)
Q Consensus       369 s~~~~v~~~~~~~~~~~~~~~~V~L~k~~--~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaV  446 (671)
                      ++++.+..++.+.+...++|..|.+..-.  ....||+..      .    .|++|..|.++|||+++| |++||+|++|
T Consensus       249 ~~~~~v~~~l~~~g~v~r~~LGv~~~~l~~~~~~~lgl~~------~----~Gv~V~~V~~~SpA~~AG-L~~GDvIl~I  317 (455)
T PRK10139        249 NMARTLAQQLIDFGEIKRGLLGIKGTEMSADIAKAFNLDV------Q----RGAFVSEVLPNSGSAKAG-VKAGDIITSL  317 (455)
T ss_pred             HHHHHHHHHHhhcCcccccceeEEEEECCHHHHHhcCCCC------C----CceEEEEECCCChHHHCC-CCCCCEEEEE
Confidence            45566666777777888888888876522  123455421      1    689999999999999999 9999999999


Q ss_pred             CCeeccCCCHHHHHHHHh--cCCCeEEEEEEeCCcccccccccccccccccccccccccccccCCcccCCcccchhhhhh
Q psy1156         447 NGQRLRGLTMTQAKSIIS--SGPLNMDLLISRTSLKKSNAENEYNESHSREKKSKETRFSLDKQNDFESSNEQDKNNQKR  524 (671)
Q Consensus       447 NG~~V~~~s~~~av~~L~--~~g~~V~L~V~R~~~~~~~a~~~~~~~~s~~~~~~~~~ss~d~e~~~~ssp~~~k~s~~~  524 (671)
                      ||+.+..+  .++...+.  ..+..+.|+|.|.++.......             .     ...      +...      
T Consensus       318 nG~~V~s~--~dl~~~l~~~~~g~~v~l~V~R~G~~~~l~v~-------------~-----~~~------~~~~------  365 (455)
T PRK10139        318 NGKPLNSF--AELRSRIATTEPGTKVKLGLLRNGKPLEVEVT-------------L-----DTS------TSSS------  365 (455)
T ss_pred             CCEECCCH--HHHHHHHHhcCCCCEEEEEEEECCEEEEEEEE-------------E-----CCC------CCcc------
Confidence            99999865  55555554  4577899999997753222000             0     000      0000      


Q ss_pred             hccccccccchhhhhhcccccCCCCCchhhhhhccCCccCCCCCCCCcccceeeEEEeeCCCCCcccEEEecCCCCCCCC
Q psy1156         525 LFQKNCHSINNKLLRKAIISTGSISGDEEETILTSTNFCTLPRRPRSAICTFHTIVFEKGPGKKGLGFTIVGGKDSPRGA  604 (671)
Q Consensus       525 ~~q~~~~s~~~~~~r~~v~s~~s~s~d~~~s~~~s~~~~~lP~~p~s~~~~~~~V~L~K~~g~~~LGfsL~Gg~ds~~g~  604 (671)
                                        .     ..     .      ...+                     ...|+.+.... .....
T Consensus       366 ------------------~-----~~-----~------~~~~---------------------~~~g~~l~~~~-~~~~~  389 (455)
T PRK10139        366 ------------------A-----SA-----E------MITP---------------------ALQGATLSDGQ-LKDGT  389 (455)
T ss_pred             ------------------c-----cc-----c------cccc---------------------cccccEecccc-cccCC
Confidence                              0     00     0      0000                     00122221110 01112


Q ss_pred             cceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcCCCcEEEEEEeCCC
Q psy1156         605 IGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKNGSISLHICRRLK  667 (671)
Q Consensus       605 ~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg~~~VtL~V~Rr~~  667 (671)
                      .|++|..|.++|+|+++| |++||+|++|||+++.  +++++..+|++.+ +.+.|+|.|+..
T Consensus       390 ~Gv~V~~V~~~spA~~aG-L~~GD~I~~Ing~~v~--~~~~~~~~l~~~~-~~v~l~v~R~g~  448 (455)
T PRK10139        390 KGIKIDEVVKGSPAAQAG-LQKDDVIIGVNRDRVN--SIAEMRKVLAAKP-AIIALQIVRGNE  448 (455)
T ss_pred             CceEEEEeCCCChHHHcC-CCCCCEEEEECCEEcC--CHHHHHHHHHhCC-CeEEEEEEECCE
Confidence            489999999999999999 9999999999999998  7899999998865 789999998764

>KOG3605|consensus

Probab=99.57  E-value=6.2e-15  Score=163.87  Aligned_cols=165  Identities=30%  Similarity=0.489  Sum_probs=134.5

Q ss_pred             CCCeEEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHh
Q psy1156         385 QEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIIS  464 (671)
Q Consensus       385 ~~~~~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~  464 (671)
                      ....+.|.|.|.+ ++.||+.|+...  .+.-+.-|+|+.++++|||+++|.|-.||+|++|||.++.+++..-...+++
T Consensus       643 kE~qKEVvv~K~k-GEiLGVViVESG--WGSmLPTVViAnmm~~GpAarsgkLnIGDQiiaING~SLVGLPLstcQs~Ik  719 (829)
T KOG3605|consen  643 KENQKEVVLEKHK-GEILGVVIVESG--WGSILPTVVIANMMHGGPAARSGKLNIGDQIMSINGTSLVGLPLSTCQSIIK  719 (829)
T ss_pred             hcccceeeeeccc-CceeeEEEEecC--ccccchHHHHHhcccCChhhhcCCccccceeEeecCceeccccHHHHHHHHh
Confidence            4667889999964 799999988521  1112466899999999999999999999999999999999999999999998


Q ss_pred             cC--CCeEEEEEEeCCcccccccccccccccccccccccccccccCCcccCCcccchhhhhhhccccccccchhhhhhcc
Q psy1156         465 SG--PLNMDLLISRTSLKKSNAENEYNESHSREKKSKETRFSLDKQNDFESSNEQDKNNQKRLFQKNCHSINNKLLRKAI  542 (671)
Q Consensus       465 ~~--g~~V~L~V~R~~~~~~~a~~~~~~~~s~~~~~~~~~ss~d~e~~~~ssp~~~k~s~~~~~q~~~~s~~~~~~r~~v  542 (671)
                      ..  ...|.|+|.+-.                                                                
T Consensus       720 ~~KnQT~VkltiV~cp----------------------------------------------------------------  735 (829)
T KOG3605|consen  720 GLKNQTAVKLNIVSCP----------------------------------------------------------------  735 (829)
T ss_pred             cccccceEEEEEecCC----------------------------------------------------------------
Confidence            43  456777774311                                                                


Q ss_pred             cccCCCCCchhhhhhccCCccCCCCCCCCcccceeeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhC
Q psy1156         543 ISTGSISGDEEETILTSTNFCTLPRRPRSAICTFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDG  622 (671)
Q Consensus       543 ~s~~s~s~d~~~s~~~s~~~~~lP~~p~s~~~~~~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraG  622 (671)
                                                      ...+|.|.|....-.|||+|..|          +|-++..||.|++-|
T Consensus       736 --------------------------------PV~~V~I~RPd~kyQLGFSVQNG----------iICSLlRGGIAERGG  773 (829)
T KOG3605|consen  736 --------------------------------PVTTVLIRRPDLRYQLGFSVQNG----------IICSLLRGGIAERGG  773 (829)
T ss_pred             --------------------------------CceEEEeecccchhhccceeeCc----------EeehhhcccchhccC
Confidence                                            11256777776667899999865          788999999999988


Q ss_pred             CCCCCCEEEEECCeecCCCCHHHHHHHHHhcCCCcEEE
Q psy1156         623 RLKEGDEILAINGQVCHDLTHLEAISLFKTIKNGSISL  660 (671)
Q Consensus       623 rLr~GDrILeVNG~sV~~lSheEAV~lLK~sg~~~VtL  660 (671)
                       +|+|-||++|||++|....|+.+|++|..+- +.|.+
T Consensus       774 -VRVGHRIIEINgQSVVA~pHekIV~lLs~aV-GEIhM  809 (829)
T KOG3605|consen  774 -VRVGHRIIEINGQSVVATPHEKIVQLLSNAV-GEIHM  809 (829)
T ss_pred             -ceeeeeEEEECCceEEeccHHHHHHHHHHhh-hhhhh
Confidence             9999999999999999999999999998863 55544

>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family

Probab=99.55  E-value=4.3e-14  Score=156.60  Aligned_cols=193  Identities=24%  Similarity=0.309  Sum_probs=125.2

Q ss_pred             ccchhccccCCCCCCCCeEEEEEEeCC--CCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCC
Q psy1156         371 MEISELSSENSEDSQEGQTMVRVNRRD--FNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNG  448 (671)
Q Consensus       371 ~~~v~~~~~~~~~~~~~~~~V~L~k~~--~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG  448 (671)
                      .+.+..++...+...++|..|.+..-.  ....||+..      .    .|++|..|.++|||+++| |++||+|++|||
T Consensus       218 ~~~~~~~l~~~g~~~~~~lGi~~~~~~~~~~~~lgl~~------~----~Gv~V~~V~~~spA~~aG-L~~GDvI~~Vng  286 (428)
T TIGR02037       218 AKNVVDQLIEGGKVQRGWLGVTIQEVTSDLAKSLGLEK------Q----RGALVAQVLPGSPAEKAG-LKAGDVILSVNG  286 (428)
T ss_pred             HHHHHHHHHhcCcCcCCcCceEeecCCHHHHHHcCCCC------C----CceEEEEccCCCChHHcC-CCCCCEEEEECC
Confidence            344444444555556666666665421  123345321      1    689999999999999999 999999999999


Q ss_pred             eeccCCCHHHHHHHHh--cCCCeEEEEEEeCCcccccccccccccccccccccccccccccCCcccCCcccchhhhhhhc
Q psy1156         449 QRLRGLTMTQAKSIIS--SGPLNMDLLISRTSLKKSNAENEYNESHSREKKSKETRFSLDKQNDFESSNEQDKNNQKRLF  526 (671)
Q Consensus       449 ~~V~~~s~~~av~~L~--~~g~~V~L~V~R~~~~~~~a~~~~~~~~s~~~~~~~~~ss~d~e~~~~ssp~~~k~s~~~~~  526 (671)
                      ..+..+  .+....+.  ..+..+.|+|.|++........             ....           +...        
T Consensus       287 ~~i~~~--~~~~~~l~~~~~g~~v~l~v~R~g~~~~~~v~-------------l~~~-----------~~~~--------  332 (428)
T TIGR02037       287 KPISSF--ADLRRAIGTLKPGKKVTLGILRKGKEKTITVT-------------LGAS-----------PEEQ--------  332 (428)
T ss_pred             EEcCCH--HHHHHHHHhcCCCCEEEEEEEECCEEEEEEEE-------------ECcC-----------CCcc--------
Confidence            999754  34444443  4578899999997753222000             0000           0000        


Q ss_pred             cccccccchhhhhhcccccCCCCCchhhhhhccCCccCCCCCCCCcccceeeEEEeeCCCCCcccEEEecCC-------C
Q psy1156         527 QKNCHSINNKLLRKAIISTGSISGDEEETILTSTNFCTLPRRPRSAICTFHTIVFEKGPGKKGLGFTIVGGK-------D  599 (671)
Q Consensus       527 q~~~~s~~~~~~r~~v~s~~s~s~d~~~s~~~s~~~~~lP~~p~s~~~~~~~V~L~K~~g~~~LGfsL~Gg~-------d  599 (671)
                                                             +.  .             .  ...+|+.+..-.       .
T Consensus       333 ---------------------------------------~~--~-------------~--~~~lGi~~~~l~~~~~~~~~  356 (428)
T TIGR02037       333 ---------------------------------------AS--S-------------S--NPFLGLTVANLSPEIRKELR  356 (428)
T ss_pred             ---------------------------------------cc--c-------------c--ccccceEEecCCHHHHHHcC
Confidence                                                   00  0             0  012333332110       0


Q ss_pred             CCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhc-CCCcEEEEEEeCCC
Q psy1156         600 SPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTI-KNGSISLHICRRLK  667 (671)
Q Consensus       600 s~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~s-g~~~VtL~V~Rr~~  667 (671)
                      .+....|++|..|.++|+|+++| |++||+|++|||++|.  +..++.++|++. ..+.+.|+|.|+..
T Consensus       357 l~~~~~Gv~V~~V~~~SpA~~aG-L~~GDvI~~Ing~~V~--s~~d~~~~l~~~~~g~~v~l~v~R~g~  422 (428)
T TIGR02037       357 LKGDVKGVVVTKVVSGSPAARAG-LQPGDVILSVNQQPVS--SVAELRKVLDRAKKGGRVALLILRGGA  422 (428)
T ss_pred             CCcCcCceEEEEeCCCCHHHHcC-CCCCCEEEEECCEEcC--CHHHHHHHHHhcCCCCEEEEEEEECCE
Confidence            01112489999999999999999 9999999999999998  678889888865 24679999999764

This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.

>PRK10942 serine endoprotease; Provisional

Probab=99.55  E-value=6.3e-14  Score=157.29  Aligned_cols=193  Identities=17%  Similarity=0.216  Sum_probs=129.0

Q ss_pred             ccccchhccccCCCCCCCCeEEEEEEeCC--CCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEcc
Q psy1156         369 SMMEISELSSENSEDSQEGQTMVRVNRRD--FNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISV  446 (671)
Q Consensus       369 s~~~~v~~~~~~~~~~~~~~~~V~L~k~~--~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaV  446 (671)
                      .+.+.+..++...+...++|..|.++.-+  ....||+.-      .    .|++|..|.+++||+++| |++||+|++|
T Consensus       270 ~~~~~v~~~l~~~g~v~rg~lGv~~~~l~~~~a~~~~l~~------~----~GvlV~~V~~~SpA~~AG-L~~GDvIl~I  338 (473)
T PRK10942        270 NMVKNLTSQMVEYGQVKRGELGIMGTELNSELAKAMKVDA------Q----RGAFVSQVLPNSSAAKAG-IKAGDVITSL  338 (473)
T ss_pred             HHHHHHHHHHHhccccccceeeeEeeecCHHHHHhcCCCC------C----CceEEEEECCCChHHHcC-CCCCCEEEEE
Confidence            44555556666677777888888876422  123344321      1    689999999999999999 9999999999


Q ss_pred             CCeeccCCCHHHHHHHHh--cCCCeEEEEEEeCCcccccccccccccccccccccccccccccCCcccCCcccchhhhhh
Q psy1156         447 NGQRLRGLTMTQAKSIIS--SGPLNMDLLISRTSLKKSNAENEYNESHSREKKSKETRFSLDKQNDFESSNEQDKNNQKR  524 (671)
Q Consensus       447 NG~~V~~~s~~~av~~L~--~~g~~V~L~V~R~~~~~~~a~~~~~~~~s~~~~~~~~~ss~d~e~~~~ssp~~~k~s~~~  524 (671)
                      ||+.|..+  .+....+.  ..+..+.|+|.|+++.......             ...  .         +...      
T Consensus       339 nG~~V~s~--~dl~~~l~~~~~g~~v~l~v~R~G~~~~v~v~-------------l~~--~---------~~~~------  386 (473)
T PRK10942        339 NGKPISSF--AALRAQVGTMPVGSKLTLGLLRDGKPVNVNVE-------------LQQ--S---------SQNQ------  386 (473)
T ss_pred             CCEECCCH--HHHHHHHHhcCCCCEEEEEEEECCeEEEEEEE-------------eCc--C---------cccc------
Confidence            99999865  44444443  3577899999998753222000             000  0         0000      


Q ss_pred             hccccccccchhhhhhcccccCCCCCchhhhhhccCCccCCCCCCCCcccceeeEEEeeCCCCCcccEEEecCCCCCCCC
Q psy1156         525 LFQKNCHSINNKLLRKAIISTGSISGDEEETILTSTNFCTLPRRPRSAICTFHTIVFEKGPGKKGLGFTIVGGKDSPRGA  604 (671)
Q Consensus       525 ~~q~~~~s~~~~~~r~~v~s~~s~s~d~~~s~~~s~~~~~lP~~p~s~~~~~~~V~L~K~~g~~~LGfsL~Gg~ds~~g~  604 (671)
                                                              ..                ..  ...+|+....-.... ..
T Consensus       387 ----------------------------------------~~----------------~~--~~~lGl~g~~l~~~~-~~  407 (473)
T PRK10942        387 ----------------------------------------VD----------------SS--NIFNGIEGAELSNKG-GD  407 (473)
T ss_pred             ----------------------------------------cc----------------cc--cccccceeeeccccc-CC
Confidence                                                    00                00  011222211100000 11


Q ss_pred             cceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcCCCcEEEEEEeCCC
Q psy1156         605 IGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKNGSISLHICRRLK  667 (671)
Q Consensus       605 ~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg~~~VtL~V~Rr~~  667 (671)
                      .|++|.+|.++|+|+++| |++||+|++|||++|.  +..++.+++++.+ ..+.|+|.|+..
T Consensus       408 ~gvvV~~V~~~S~A~~aG-L~~GDvIv~VNg~~V~--s~~dl~~~l~~~~-~~v~l~V~R~g~  466 (473)
T PRK10942        408 KGVVVDNVKPGTPAAQIG-LKKGDVIIGANQQPVK--NIAELRKILDSKP-SVLALNIQRGDS  466 (473)
T ss_pred             CCeEEEEeCCCChHHHcC-CCCCCEEEEECCEEcC--CHHHHHHHHHhCC-CeEEEEEEECCE
Confidence            389999999999999999 9999999999999999  6899999998865 789999988753

>KOG3571|consensus

Probab=99.54  E-value=4.7e-14  Score=153.53  Aligned_cols=205  Identities=22%  Similarity=0.188  Sum_probs=136.2

Q ss_pred             ccCCCCCCCCCccccCCCCCCCCCCccccccccCCCCCCccCcCC-----------CCCCccccCccchhhhcccCCCCC
Q psy1156         254 TCSSPQSLLLPTLECSASKCDSPTISTRSTVTSNSEKPSFLDKFR-----------NSPSKSENGQLPNFQIQSYGYDSP  322 (671)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~d~~~~s~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~e~l~~~~~~~~~~~~p  322 (671)
                      +|.... ..+||.+|++|++|+|+|+++++...   +++.+|...           |.+++++.|+-....+...+ .-+
T Consensus       100 ~g~~~~-~~l~p~ers~G~~~~r~p~~~~~~~~---s~~~~~~~~~t~s~~s~~~~r~~~r~~~e~~~~~g~~~g~-r~~  174 (626)
T KOG3571|consen  100 QGRDRR-LDLPPSERSSGIGDSRPPQFTPNDKR---SRDSQDFDLTTYSDVSLARSRPVRRQRYERHLHNGEHLGE-RRR  174 (626)
T ss_pred             cccccc-ccCCccccCCCcccccCcccCCCccc---cccccccccccHhhhhhcccccccchhhhhhhhcCccccc-ccc
Confidence            344443 46778999999999999999999865   555666544           45566665554322211111 114


Q ss_pred             ccccccccCchhhhhcccCCcccc--ccCC-------------------CCCCCCCCCcccCCccccccccchhccccCC
Q psy1156         323 ILSSRSQNSSMISEKYNLDVPNIF--NRNS-------------------GSQSLLEIPAYQNSSDYHSMMEISELSSENS  381 (671)
Q Consensus       323 ~~s~~~~~~s~i~e~~~~~~~~~~--~r~~-------------------~~~~~~PiP~~~~s~~~~s~~~~v~~~~~~~  381 (671)
                      +.++.+.++++.++.--.+.++..  .+..                   .-.+.+-+|....           -...+-.
T Consensus       175 ~~~Sss~~sse~d~~s~~d~Ded~~~sr~s~~Td~ss~srl~~r~K~rrrkkR~p~~~sr~S-----------SfSSiTd  243 (626)
T KOG3571|consen  175 YESSSSELSSELDSTSFRDSDEDDLYSRLSSSTDQSSVSRLHRRKKRRRRKKRRPRVPSRAS-----------SFSSITD  243 (626)
T ss_pred             cccccccccccccceeeccCccccccccccccccchhHHHHHHHHHHhhhhhcCCCcccccc-----------ccccccc
Confidence            556667777777543333322222  3321                   1222333332100           0000011


Q ss_pred             CCCCCCeEEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHH
Q psy1156         382 EDSQEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKS  461 (671)
Q Consensus       382 ~~~~~~~~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~  461 (671)
                      .....++++|.|.... -.-|||+|+|... ..|+ .||||..|++||+.+..|+|.+||+||+||.+++++++..+||.
T Consensus       244 SsmslnIITV~LnMe~-vnfLGiSivgqsn-~rgD-ggIYVgsImkgGAVA~DGRIe~GDMiLQVNevsFENmSNd~AVr  320 (626)
T KOG3571|consen  244 SSMSLNIITVTLNMET-VNFLGISIVGQSN-ARGD-GGIYVGSIMKGGAVALDGRIEPGDMILQVNEVSFENMSNDQAVR  320 (626)
T ss_pred             cccceeEEEEEecccc-cccceeEeecccC-cCCC-CceEEeeeccCceeeccCccCccceEEEeeecchhhcCchHHHH
Confidence            1224678999998865 4679999998654 4566 89999999999999999999999999999999999999999999


Q ss_pred             HHh---cCCCeEEEEEEeC
Q psy1156         462 IIS---SGPLNMDLLISRT  477 (671)
Q Consensus       462 ~L~---~~g~~V~L~V~R~  477 (671)
                      +|+   +..+.+.|+|..-
T Consensus       321 vLREaV~~~gPi~ltvAk~  339 (626)
T KOG3571|consen  321 VLREAVSRPGPIKLTVAKC  339 (626)
T ss_pred             HHHHHhccCCCeEEEEeec
Confidence            999   4567799999763

>PF00595 PDZ: PDZ domain (Also known as DHR or GLGF) Coordinates are not yet available; InterPro: IPR001478 PDZ domains are found in diverse signalling proteins in bacteria, yeasts, plants, insects and vertebrates [, ]

Probab=99.44  E-value=7.9e-13  Score=113.07  Aligned_cols=81  Identities=37%  Similarity=0.679  Sum_probs=72.1

Q ss_pred             eEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcCCCc
Q psy1156         578 TIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKNGS  657 (671)
Q Consensus       578 ~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg~~~  657 (671)
                      +|+|.|. ...+|||.+.++.+..  ..|+||.+|.++|+|+++| |++||+|++|||+++.+++|.+++.+|+.++ +.
T Consensus         1 ~v~l~k~-~~~~lG~~l~~~~~~~--~~~~~V~~v~~~~~a~~~g-l~~GD~Il~INg~~v~~~~~~~~~~~l~~~~-~~   75 (81)
T PF00595_consen    1 QVTLEKS-GNGPLGFTLRGGSDND--EKGVFVSSVVPGSPAERAG-LKVGDRILEINGQSVRGMSHDEVVQLLKSAS-NP   75 (81)
T ss_dssp             EEEEEES-TTSBSSEEEEEESTSS--SEEEEEEEECTTSHHHHHT-SSTTEEEEEETTEESTTSBHHHHHHHHHHST-SE
T ss_pred             CEEEEeC-CCCCcCEEEEecCCCC--cCCEEEEEEeCCChHHhcc-cchhhhhheeCCEeCCCCCHHHHHHHHHCCC-Cc
Confidence            3678886 3599999999987642  3489999999999999999 9999999999999999999999999999986 68


Q ss_pred             EEEEEE
Q psy1156         658 ISLHIC  663 (671)
Q Consensus       658 VtL~V~  663 (671)
                      |+|+|+
T Consensus        76 v~L~V~   81 (81)
T PF00595_consen   76 VTLTVQ   81 (81)
T ss_dssp             EEEEEE
T ss_pred             EEEEEC
Confidence            999885

PDZ domains can occur in one or multiple copies and are nearly always found in cytoplasmic proteins. They bind either the carboxyl-terminal sequences of proteins or internal peptide sequences []. In most cases, interaction between a PDZ domain and its target is constitutive, with a binding affinity of 1 to 10 microns. However, agonist-dependent activation of cell surface receptors is sometimes required to promote interaction with a PDZ protein. PDZ domain proteins are frequently associated with the plasma membrane, a compartment where high concentrations of phosphatidylinositol 4,5-bisphosphate (PIP2) are found. Direct interaction between PIP2 and a subset of class II PDZ domains (syntenin, CASK, Tiam-1) has been demonstrated. PDZ domains consist of 80 to 90 amino acids comprising six beta-strands (beta-A to beta-F) and two alpha-helices, A and B, compactly arranged in a globular structure. Peptide binding of the ligand takes place in an elongated surface groove as an anti-parallel beta-strand interacts with the beta-B strand and the B helix. The structure of PDZ domains allows binding to a free carboxylate group at the end of a peptide through a carboxylate-binding loop between the beta-A and beta-B strands.; GO: 0005515 protein binding; PDB: 3AXA_A 1WF8_A 1QAV_B 1QAU_A 1B8Q_A 1MC7_A 2KAW_A 1I16_A 1VB7_A 1WI4_A ....

>PRK10779 zinc metallopeptidase RseP; Provisional

Probab=99.43  E-value=1.7e-12  Score=145.05  Aligned_cols=153  Identities=18%  Similarity=0.254  Sum_probs=106.6

Q ss_pred             EEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhcCCCeEEEEEEeCCccccccccccccccccccccc
Q psy1156         420 FVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISRTSLKKSNAENEYNESHSREKKSK  499 (671)
Q Consensus       420 I~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~~g~~V~L~V~R~~~~~~~a~~~~~~~~s~~~~~~  499 (671)
                      .+|..|.++|||+++| |++||+|++|||+.+.++..-...-.....+..+.++|.|+++.......             
T Consensus       128 ~lV~~V~~~SpA~kAG-Lk~GDvI~~vnG~~V~~~~~l~~~v~~~~~g~~v~v~v~R~gk~~~~~v~-------------  193 (449)
T PRK10779        128 PVVGEIAPNSIAAQAQ-IAPGTELKAVDGIETPDWDAVRLALVSKIGDESTTITVAPFGSDQRRDKT-------------  193 (449)
T ss_pred             ccccccCCCCHHHHcC-CCCCCEEEEECCEEcCCHHHHHHHHHhhccCCceEEEEEeCCccceEEEE-------------
Confidence            5789999999999999 99999999999999987754433333334567899999998764332000             


Q ss_pred             ccccccccCCcccCCcccchhhhhhhccccccccchhhhhhcccccCCCCCchhhhhhccCCccCCCCCCCCcccceeeE
Q psy1156         500 ETRFSLDKQNDFESSNEQDKNNQKRLFQKNCHSINNKLLRKAIISTGSISGDEEETILTSTNFCTLPRRPRSAICTFHTI  579 (671)
Q Consensus       500 ~~~ss~d~e~~~~ssp~~~k~s~~~~~q~~~~s~~~~~~r~~v~s~~s~s~d~~~s~~~s~~~~~lP~~p~s~~~~~~~V  579 (671)
                      +......                                          . .              +...          
T Consensus       194 l~~~~~~------------------------------------------~-~--------------~~~~----------  206 (449)
T PRK10779        194 LDLRHWA------------------------------------------F-E--------------PDKQ----------  206 (449)
T ss_pred             ecccccc------------------------------------------c-C--------------cccc----------
Confidence            0000000                                          0 0              0000          


Q ss_pred             EEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcCCCcEE
Q psy1156         580 VFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKNGSIS  659 (671)
Q Consensus       580 ~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg~~~Vt  659 (671)
                           .....+|+....  .    ..+++|..|.++|||+++| |++||+|++|||++|.  +.+++.+.++..+.+.+.
T Consensus       207 -----~~~~~lGl~~~~--~----~~~~vV~~V~~~SpA~~AG-L~~GDvIl~Ing~~V~--s~~dl~~~l~~~~~~~v~  272 (449)
T PRK10779        207 -----DPVSSLGIRPRG--P----QIEPVLAEVQPNSAASKAG-LQAGDRIVKVDGQPLT--QWQTFVTLVRDNPGKPLA  272 (449)
T ss_pred             -----chhhcccccccC--C----CcCcEEEeeCCCCHHHHcC-CCCCCEEEEECCEEcC--CHHHHHHHHHhCCCCEEE
Confidence                 000235553221  1    1257999999999999999 9999999999999998  788888888876556799


Q ss_pred             EEEEeCCC
Q psy1156         660 LHICRRLK  667 (671)
Q Consensus       660 L~V~Rr~~  667 (671)
                      |+|.|+..
T Consensus       273 l~v~R~g~  280 (449)
T PRK10779        273 LEIERQGS  280 (449)
T ss_pred             EEEEECCE
Confidence            99988763

>PF00595 PDZ: PDZ domain (Also known as DHR or GLGF) Coordinates are not yet available; InterPro: IPR001478 PDZ domains are found in diverse signalling proteins in bacteria, yeasts, plants, insects and vertebrates [, ]

Probab=99.34  E-value=8.9e-12  Score=106.56  Aligned_cols=81  Identities=27%  Similarity=0.507  Sum_probs=72.8

Q ss_pred             EEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhcCCCe
Q psy1156         390 MVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLN  469 (671)
Q Consensus       390 ~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~~g~~  469 (671)
                      .|+|.|. ..++|||.+.++.+..  . .++||..|.++|||+++| |++||+|++|||+++.++++.+++.+++.++..
T Consensus         1 ~v~l~k~-~~~~lG~~l~~~~~~~--~-~~~~V~~v~~~~~a~~~g-l~~GD~Il~INg~~v~~~~~~~~~~~l~~~~~~   75 (81)
T PF00595_consen    1 QVTLEKS-GNGPLGFTLRGGSDND--E-KGVFVSSVVPGSPAERAG-LKVGDRILEINGQSVRGMSHDEVVQLLKSASNP   75 (81)
T ss_dssp             EEEEEES-TTSBSSEEEEEESTSS--S-EEEEEEEECTTSHHHHHT-SSTTEEEEEETTEESTTSBHHHHHHHHHHSTSE
T ss_pred             CEEEEeC-CCCCcCEEEEecCCCC--c-CCEEEEEEeCCChHHhcc-cchhhhhheeCCEeCCCCCHHHHHHHHHCCCCc
Confidence            4788886 6799999999987642  1 489999999999999999 999999999999999999999999999988889


Q ss_pred             EEEEEE
Q psy1156         470 MDLLIS  475 (671)
Q Consensus       470 V~L~V~  475 (671)
                      |+|+|.
T Consensus        76 v~L~V~   81 (81)
T PF00595_consen   76 VTLTVQ   81 (81)
T ss_dssp             EEEEEE
T ss_pred             EEEEEC
Confidence            999884

PDZ domains can occur in one or multiple copies and are nearly always found in cytoplasmic proteins. They bind either the carboxyl-terminal sequences of proteins or internal peptide sequences []. In most cases, interaction between a PDZ domain and its target is constitutive, with a binding affinity of 1 to 10 microns. However, agonist-dependent activation of cell surface receptors is sometimes required to promote interaction with a PDZ protein. PDZ domain proteins are frequently associated with the plasma membrane, a compartment where high concentrations of phosphatidylinositol 4,5-bisphosphate (PIP2) are found. Direct interaction between PIP2 and a subset of class II PDZ domains (syntenin, CASK, Tiam-1) has been demonstrated. PDZ domains consist of 80 to 90 amino acids comprising six beta-strands (beta-A to beta-F) and two alpha-helices, A and B, compactly arranged in a globular structure. Peptide binding of the ligand takes place in an elongated surface groove as an anti-parallel beta-strand interacts with the beta-B strand and the B helix. The structure of PDZ domains allows binding to a free carboxylate group at the end of a peptide through a carboxylate-binding loop between the beta-A and beta-B strands.; GO: 0005515 protein binding; PDB: 3AXA_A 1WF8_A 1QAV_B 1QAU_A 1B8Q_A 1MC7_A 2KAW_A 1I16_A 1VB7_A 1WI4_A ....

>KOG3550|consensus

Probab=99.28  E-value=8.5e-12  Score=118.06  Aligned_cols=83  Identities=34%  Similarity=0.589  Sum_probs=75.3

Q ss_pred             eeeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcCC
Q psy1156         576 FHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKN  655 (671)
Q Consensus       576 ~~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg~  655 (671)
                      .+.|.|.|..  ++|||.|-||++..   .+|||+.|.|||.|++.|.|+.||++|.|||++|.+-.|+.||++|+.+ .
T Consensus        91 prvvelpktd--eglgfnvmggkeqn---spiyisriipggvadrhgglkrgdqllsvngvsvege~hekavellkaa-~  164 (207)
T KOG3550|consen   91 PRVVELPKTD--EGLGFNVMGGKEQN---SPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEHHEKAVELLKAA-V  164 (207)
T ss_pred             CceeecCccc--cccceeeccCcccC---CceEEEeecCCccccccCcccccceeEeecceeecchhhHHHHHHHHHh-c
Confidence            3567787775  89999999998865   7899999999999999999999999999999999999999999999998 4


Q ss_pred             CcEEEEEEe
Q psy1156         656 GSISLHICR  664 (671)
Q Consensus       656 ~~VtL~V~R  664 (671)
                      +.|.|+|.-
T Consensus       165 gsvklvvry  173 (207)
T KOG3550|consen  165 GSVKLVVRY  173 (207)
T ss_pred             CcEEEEEec
Confidence            899999854

>TIGR00054 RIP metalloprotease RseP

Probab=99.27  E-value=4.7e-11  Score=132.44  Aligned_cols=135  Identities=24%  Similarity=0.297  Sum_probs=100.7

Q ss_pred             CcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhcCCCeEEEEEEeCCccccccccccccccccccc
Q psy1156         418 GGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISRTSLKKSNAENEYNESHSREKK  497 (671)
Q Consensus       418 ~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~~g~~V~L~V~R~~~~~~~a~~~~~~~~s~~~~  497 (671)
                      .|++|..|.++|||+++| |++||+|++|||..+.++.  +....+....+.+.+.+.|.+.....              
T Consensus       128 ~g~~V~~V~~~SpA~~AG-L~~GDvI~~vng~~v~~~~--dl~~~ia~~~~~v~~~I~r~g~~~~l--------------  190 (420)
T TIGR00054       128 VGPVIELLDKNSIALEAG-IEPGDEILSVNGNKIPGFK--DVRQQIADIAGEPMVEILAERENWTF--------------  190 (420)
T ss_pred             CCceeeccCCCCHHHHcC-CCCCCEEEEECCEEcCCHH--HHHHHHHhhcccceEEEEEecCceEe--------------
Confidence            578999999999999999 9999999999999998653  33333332227788888885431000              


Q ss_pred             ccccccccccCCcccCCcccchhhhhhhccccccccchhhhhhcccccCCCCCchhhhhhccCCccCCCCCCCCccccee
Q psy1156         498 SKETRFSLDKQNDFESSNEQDKNNQKRLFQKNCHSINNKLLRKAIISTGSISGDEEETILTSTNFCTLPRRPRSAICTFH  577 (671)
Q Consensus       498 ~~~~~ss~d~e~~~~ssp~~~k~s~~~~~q~~~~s~~~~~~r~~v~s~~s~s~d~~~s~~~s~~~~~lP~~p~s~~~~~~  577 (671)
                                                                                                      
T Consensus       191 --------------------------------------------------------------------------------  190 (420)
T TIGR00054       191 --------------------------------------------------------------------------------  190 (420)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             eEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcCCCc
Q psy1156         578 TIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKNGS  657 (671)
Q Consensus       578 ~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg~~~  657 (671)
                      .+         .+|+..  ...    ..|++|.+|.++|||+++| |++||+|++|||++|.  +.+++...++..+...
T Consensus       191 ~v---------~l~~~~--~~~----~~g~vV~~V~~~SpA~~aG-L~~GD~Iv~Vng~~V~--s~~dl~~~l~~~~~~~  252 (420)
T TIGR00054       191 EV---------MKELIP--RGP----KIEPVLSDVTPNSPAEKAG-LKEGDYIQSINGEKLR--SWTDFVSAVKENPGKS  252 (420)
T ss_pred             cc---------ccccee--cCC----CcCcEEEEECCCCHHHHcC-CCCCCEEEEECCEECC--CHHHHHHHHHhCCCCc
Confidence            00         011110  000    0257999999999999999 9999999999999998  7899999998765567


Q ss_pred             EEEEEEeCCC
Q psy1156         658 ISLHICRRLK  667 (671)
Q Consensus       658 VtL~V~Rr~~  667 (671)
                      +.|+|.|+..
T Consensus       253 v~l~v~R~g~  262 (420)
T TIGR00054       253 MDIKVERNGE  262 (420)
T ss_pred             eEEEEEECCE
Confidence            9999988753

A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.

>KOG3550|consensus

Probab=99.13  E-value=1.1e-10  Score=110.48  Aligned_cols=89  Identities=25%  Similarity=0.455  Sum_probs=80.2

Q ss_pred             CCCeEEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHh
Q psy1156         385 QEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIIS  464 (671)
Q Consensus       385 ~~~~~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~  464 (671)
                      ...++.|.|-|.+  ++|||.|.||.+..    .+|||++|.|||.|++-|.|+.||++++|||.+|++-.|+.++.+|+
T Consensus        88 hahprvvelpktd--eglgfnvmggkeqn----spiyisriipggvadrhgglkrgdqllsvngvsvege~hekavellk  161 (207)
T KOG3550|consen   88 HAHPRVVELPKTD--EGLGFNVMGGKEQN----SPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEHHEKAVELLK  161 (207)
T ss_pred             CCCCceeecCccc--cccceeeccCcccC----CceEEEeecCCccccccCcccccceeEeecceeecchhhHHHHHHHH
Confidence            3456889998754  99999999999876    89999999999999999999999999999999999999999999999


Q ss_pred             cCCCeEEEEEEeCCc
Q psy1156         465 SGPLNMDLLISRTSL  479 (671)
Q Consensus       465 ~~g~~V~L~V~R~~~  479 (671)
                      .+.+.|.|+|..-.+
T Consensus       162 aa~gsvklvvrytpk  176 (207)
T KOG3550|consen  162 AAVGSVKLVVRYTPK  176 (207)
T ss_pred             HhcCcEEEEEecChH
Confidence            999999999965433

>KOG3549|consensus

Probab=99.02  E-value=5.4e-10  Score=117.70  Aligned_cols=88  Identities=20%  Similarity=0.263  Sum_probs=81.6

Q ss_pred             CCCCeEEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHH
Q psy1156         384 SQEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSII  463 (671)
Q Consensus       384 ~~~~~~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L  463 (671)
                      .+.+-++|+|.+. +-++||++|.||.++.    .+|+|++|.+.-.|+..|.|.+||-|++|||+.|+.++|++++.+|
T Consensus        51 ~~s~eRtVtirRQ-~vGGlGLSIKGGaEHn----~PvviSkI~kdQaAd~tG~LFvGDAilqvNGi~v~~c~HeevV~iL  125 (505)
T KOG3549|consen   51 MESKERTVTIRRQ-KVGGLGLSIKGGAEHN----LPVVISKIYKDQAADITGQLFVGDAILQVNGIYVTACPHEEVVNIL  125 (505)
T ss_pred             ccCCceeEEEEee-ecCcceeeeccccccC----ccEEeehhhhhhhhhhcCceEeeeeeEEeccEEeecCChHHHHHHH
Confidence            3567799999885 4799999999999876    8999999999999999999999999999999999999999999999


Q ss_pred             hcCCCeEEEEEEe
Q psy1156         464 SSGPLNMDLLISR  476 (671)
Q Consensus       464 ~~~g~~V~L~V~R  476 (671)
                      +++|+.|+|+|..
T Consensus       126 RNAGdeVtlTV~~  138 (505)
T KOG3549|consen  126 RNAGDEVTLTVKH  138 (505)
T ss_pred             HhcCCEEEEEeHh
Confidence            9999999999954

>cd00992 PDZ_signaling PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements

Probab=99.00  E-value=4.7e-09  Score=88.91  Aligned_cols=80  Identities=41%  Similarity=0.721  Sum_probs=67.8

Q ss_pred             eeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcCCC
Q psy1156         577 HTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKNG  656 (671)
Q Consensus       577 ~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg~~  656 (671)
                      +.+.+.+.. ..+|||.+.+....   ..|++|..|.++++|+++| |++||+|++|||.++..+++.++..+|+... .
T Consensus         2 ~~~~l~~~~-~~~~G~~~~~~~~~---~~~~~V~~v~~~s~a~~~g-l~~GD~I~~ing~~i~~~~~~~~~~~l~~~~-~   75 (82)
T cd00992           2 RTVTLRKDP-GGGLGFSLRGGKDS---GGGIFVSRVEPGGPAERGG-LRVGDRILEVNGVSVEGLTHEEAVELLKNSG-D   75 (82)
T ss_pred             EEEEEEeCC-CCCcCEEEeCcccC---CCCeEEEEECCCChHHhCC-CCCCCEEEEECCEEcCccCHHHHHHHHHhCC-C
Confidence            356777763 47899999876543   2489999999999999988 9999999999999999999999999999874 5


Q ss_pred             cEEEEE
Q psy1156         657 SISLHI  662 (671)
Q Consensus       657 ~VtL~V  662 (671)
                      .+.|+|
T Consensus        76 ~v~l~v   81 (82)
T cd00992          76 EVTLTV   81 (82)
T ss_pred             eEEEEE
Confidence            777776

May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases.

>cd00136 PDZ PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif)

Probab=98.98  E-value=3.5e-09  Score=87.41  Aligned_cols=68  Identities=35%  Similarity=0.590  Sum_probs=60.7

Q ss_pred             cccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcCCCcEEEEE
Q psy1156         589 GLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKNGSISLHI  662 (671)
Q Consensus       589 ~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg~~~VtL~V  662 (671)
                      +|||.+.+..+     .|++|..|.+++||+.+| |++||+|++|||.++.++++.++..+|+......|.|.|
T Consensus         2 ~~G~~~~~~~~-----~~~~V~~v~~~s~a~~~g-l~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v   69 (70)
T cd00136           2 GLGFSIRGGTE-----GGVVVLSVEPGSPAERAG-LQAGDVILAVNGTDVKNLTLEDVAELLKKEVGEKVTLTV   69 (70)
T ss_pred             CccEEEecCCC-----CCEEEEEeCCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhhCCCCeEEEEE
Confidence            58999987654     379999999999999998 999999999999999999999999999987646788876

Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(pos

>smart00228 PDZ Domain present in PSD-95, Dlg, and ZO-1/2

Probab=98.93  E-value=1.5e-08  Score=85.82  Aligned_cols=81  Identities=44%  Similarity=0.747  Sum_probs=69.2

Q ss_pred             eEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcCCCc
Q psy1156         578 TIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKNGS  657 (671)
Q Consensus       578 ~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg~~~  657 (671)
                      .+.+.+..  ..|||.+.......   .|++|..|.++++|+++| |++||+|++|||+.+.++++.+++.+++..+ ..
T Consensus         4 ~~~~~~~~--~~~G~~~~~~~~~~---~~~~i~~v~~~s~a~~~g-l~~GD~I~~In~~~v~~~~~~~~~~~~~~~~-~~   76 (85)
T smart00228        4 LVELEKGG--GGLGFSLVGGKDEG---GGVVVSSVVPGSPAAKAG-LKVGDVILEVNGTSVEGLTHLEAVDLLKKAG-GK   76 (85)
T ss_pred             EEEEEECC--CcccEEEECCCCCC---CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCC-Ce
Confidence            56676665  78999998654321   489999999999999999 9999999999999999999999999998874 58


Q ss_pred             EEEEEEeC
Q psy1156         658 ISLHICRR  665 (671)
Q Consensus       658 VtL~V~Rr  665 (671)
                      +.|.|.|+
T Consensus        77 ~~l~i~r~   84 (85)
T smart00228       77 VTLTVLRG   84 (85)
T ss_pred             EEEEEEeC
Confidence            99999875

Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities.

>KOG3551|consensus

Probab=98.91  E-value=1.5e-09  Score=115.73  Aligned_cols=83  Identities=31%  Similarity=0.410  Sum_probs=77.3

Q ss_pred             EEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhcCCC
Q psy1156         389 TMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPL  468 (671)
Q Consensus       389 ~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~~g~  468 (671)
                      +.|+++|.+ +++|||+|.||.++.    .+|+|+.|.+|-+|++.+.|.+||.|++|||.++...+|++||+.|+..+.
T Consensus        86 R~V~V~K~d-~gGLGISIKGGreNk----MPIlISKIFkGlAADQt~aL~~gDaIlSVNG~dL~~AtHdeAVqaLKraGk  160 (506)
T KOG3551|consen   86 RRVRVVKQD-AGGLGISIKGGRENK----MPILISKIFKGLAADQTGALFLGDAILSVNGEDLRDATHDEAVQALKRAGK  160 (506)
T ss_pred             ceeEEEEec-CCcceEEeecCcccC----CceehhHhccccccccccceeeccEEEEecchhhhhcchHHHHHHHHhhCc
Confidence            788888865 799999999999876    899999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEEEe
Q psy1156         469 NMDLLISR  476 (671)
Q Consensus       469 ~V~L~V~R  476 (671)
                      .|.|.|..
T Consensus       161 eV~levKy  168 (506)
T KOG3551|consen  161 EVLLEVKY  168 (506)
T ss_pred             eeeeeeee
Confidence            98887753

>KOG3551|consensus

Probab=98.91  E-value=1.9e-09  Score=115.08  Aligned_cols=86  Identities=30%  Similarity=0.429  Sum_probs=76.7

Q ss_pred             ccceeeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHh
Q psy1156         573 ICTFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKT  652 (671)
Q Consensus       573 ~~~~~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~  652 (671)
                      ....+.|.+.|.. .++||++|.||.+..   ++|+|+.|.+|=+|++.+.|..||.||.|||.++.+.+|+|||+.||.
T Consensus        82 ~~~~R~V~V~K~d-~gGLGISIKGGreNk---MPIlISKIFkGlAADQt~aL~~gDaIlSVNG~dL~~AtHdeAVqaLKr  157 (506)
T KOG3551|consen   82 AEAERRVRVVKQD-AGGLGISIKGGRENK---MPILISKIFKGLAADQTGALFLGDAILSVNGEDLRDATHDEAVQALKR  157 (506)
T ss_pred             hcccceeEEEEec-CCcceEEeecCcccC---CceehhHhccccccccccceeeccEEEEecchhhhhcchHHHHHHHHh
Confidence            3345788888886 489999999998865   899999999999999999999999999999999999999999999999


Q ss_pred             cCCCcEEEEEE
Q psy1156         653 IKNGSISLHIC  663 (671)
Q Consensus       653 sg~~~VtL~V~  663 (671)
                      ++ ..|.|.|.
T Consensus       158 aG-keV~levK  167 (506)
T KOG3551|consen  158 AG-KEVLLEVK  167 (506)
T ss_pred             hC-ceeeeeee
Confidence            96 67777663

>KOG3549|consensus

Probab=98.89  E-value=2.8e-09  Score=112.45  Aligned_cols=84  Identities=25%  Similarity=0.451  Sum_probs=77.6

Q ss_pred             ceeeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcC
Q psy1156         575 TFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIK  654 (671)
Q Consensus       575 ~~~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg  654 (671)
                      ..++|+|.+.+ .++||++|.||.+..   .+|+|+.|..+-+|+..|.|-+||.||+|||+.|+..+|+|+|++|+++|
T Consensus        54 ~eRtVtirRQ~-vGGlGLSIKGGaEHn---~PvviSkI~kdQaAd~tG~LFvGDAilqvNGi~v~~c~HeevV~iLRNAG  129 (505)
T KOG3549|consen   54 KERTVTIRRQK-VGGLGLSIKGGAEHN---LPVVISKIYKDQAADITGQLFVGDAILQVNGIYVTACPHEEVVNILRNAG  129 (505)
T ss_pred             CceeEEEEeee-cCcceeeeccccccC---ccEEeehhhhhhhhhhcCceEeeeeeEEeccEEeecCChHHHHHHHHhcC
Confidence            55789999887 599999999998765   78999999999999999999999999999999999999999999999996


Q ss_pred             CCcEEEEEE
Q psy1156         655 NGSISLHIC  663 (671)
Q Consensus       655 ~~~VtL~V~  663 (671)
                       +.|+|+|.
T Consensus       130 -deVtlTV~  137 (505)
T KOG3549|consen  130 -DEVTLTVK  137 (505)
T ss_pred             -CEEEEEeH
Confidence             89999883

>cd00992 PDZ_signaling PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements

Probab=98.88  E-value=1.9e-08  Score=85.13  Aligned_cols=80  Identities=31%  Similarity=0.538  Sum_probs=68.0

Q ss_pred             EEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhcCCC
Q psy1156         389 TMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPL  468 (671)
Q Consensus       389 ~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~~g~  468 (671)
                      +.+.+.+.. .++|||.+.++....    .|++|..|.+++||+++| |++||+|++|||.++..+++.++..+++....
T Consensus         2 ~~~~l~~~~-~~~~G~~~~~~~~~~----~~~~V~~v~~~s~a~~~g-l~~GD~I~~ing~~i~~~~~~~~~~~l~~~~~   75 (82)
T cd00992           2 RTVTLRKDP-GGGLGFSLRGGKDSG----GGIFVSRVEPGGPAERGG-LRVGDRILEVNGVSVEGLTHEEAVELLKNSGD   75 (82)
T ss_pred             EEEEEEeCC-CCCcCEEEeCcccCC----CCeEEEEECCCChHHhCC-CCCCCEEEEECCEEcCccCHHHHHHHHHhCCC
Confidence            467777753 689999998765321    689999999999999999 99999999999999999999999999997666


Q ss_pred             eEEEEE
Q psy1156         469 NMDLLI  474 (671)
Q Consensus       469 ~V~L~V  474 (671)
                      .+.|+|
T Consensus        76 ~v~l~v   81 (82)
T cd00992          76 EVTLTV   81 (82)
T ss_pred             eEEEEE
Confidence            777765

May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases.

>PF13180 PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_A 2PZD_B 2P3W_A 1VCW_C 1TE0_B 1SOZ_C 1SOT_C

Probab=98.86  E-value=1.1e-08  Score=87.94  Aligned_cols=72  Identities=29%  Similarity=0.507  Sum_probs=58.6

Q ss_pred             cccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHh-cCCCcEEEEEEeCCC
Q psy1156         589 GLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKT-IKNGSISLHICRRLK  667 (671)
Q Consensus       589 ~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~-sg~~~VtL~V~Rr~~  667 (671)
                      .||+.+....+.    .|++|.+|.++|||+++| |++||+|++|||.+|.  +..+....|.. .+..+|.|+|.|+.+
T Consensus         2 ~lGv~~~~~~~~----~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~--~~~~~~~~l~~~~~g~~v~l~v~R~g~   74 (82)
T PF13180_consen    2 GLGVTVQNLSDT----GGVVVVSVIPGSPAAKAG-LQPGDIILAINGKPVN--SSEDLVNILSKGKPGDTVTLTVLRDGE   74 (82)
T ss_dssp             E-SEEEEECSCS----SSEEEEEESTTSHHHHTT-S-TTEEEEEETTEESS--SHHHHHHHHHCSSTTSEEEEEEEETTE
T ss_pred             EECeEEEEccCC----CeEEEEEeCCCCcHHHCC-CCCCcEEEEECCEEcC--CHHHHHHHHHhCCCCCEEEEEEEECCE
Confidence            478887765542    489999999999999999 9999999999999997  77888888854 345789999999764

...

>smart00228 PDZ Domain present in PSD-95, Dlg, and ZO-1/2

Probab=98.85  E-value=3.7e-08  Score=83.40  Aligned_cols=82  Identities=32%  Similarity=0.528  Sum_probs=69.7

Q ss_pred             EEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhcCCC
Q psy1156         389 TMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPL  468 (671)
Q Consensus       389 ~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~~g~  468 (671)
                      ..+.+.+..  ..|||.+.......    .|++|..|.+++||+++| |++||+|++|||+.+.++++.+...++...+.
T Consensus         3 ~~~~~~~~~--~~~G~~~~~~~~~~----~~~~i~~v~~~s~a~~~g-l~~GD~I~~In~~~v~~~~~~~~~~~~~~~~~   75 (85)
T smart00228        3 RLVELEKGG--GGLGFSLVGGKDEG----GGVVVSSVVPGSPAAKAG-LKVGDVILEVNGTSVEGLTHLEAVDLLKKAGG   75 (85)
T ss_pred             EEEEEEECC--CcccEEEECCCCCC----CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCC
Confidence            457777753  89999998654321    589999999999999999 99999999999999999999999988887667


Q ss_pred             eEEEEEEeC
Q psy1156         469 NMDLLISRT  477 (671)
Q Consensus       469 ~V~L~V~R~  477 (671)
                      .+.|++.|.
T Consensus        76 ~~~l~i~r~   84 (85)
T smart00228       76 KVTLTVLRG   84 (85)
T ss_pred             eEEEEEEeC
Confidence            889988775

Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities.

>KOG3553|consensus

Probab=98.83  E-value=1.1e-09  Score=97.35  Aligned_cols=75  Identities=28%  Similarity=0.415  Sum_probs=64.6

Q ss_pred             cccEEEecCCCCCC-------CCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcCCCcEEEE
Q psy1156         589 GLGFTIVGGKDSPR-------GAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKNGSISLH  661 (671)
Q Consensus       589 ~LGfsL~Gg~ds~~-------g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg~~~VtL~  661 (671)
                      .+||.|-||-+...       .+.||||++|.+||||+.+| |+.+|.||.|||.+++-++|.+|+..|++.  ..+.++
T Consensus        36 ~~GFkIGGGIDQDp~k~Pf~ytD~GiYvT~V~eGsPA~~AG-LrihDKIlQvNG~DfTMvTHd~Avk~i~k~--~vl~mL  112 (124)
T KOG3553|consen   36 ILGFKIGGGIDQDPSKNPFSYTDKGIYVTRVSEGSPAEIAG-LRIHDKILQVNGWDFTMVTHDQAVKRITKE--EVLRML  112 (124)
T ss_pred             EEEEEeccccCCCcccCCCCcCCccEEEEEeccCChhhhhc-ceecceEEEecCceeEEEEhHHHHHHhhHh--HHHHHH
Confidence            58999999877543       25799999999999999999 999999999999999999999999999885  356666


Q ss_pred             EEeCC
Q psy1156         662 ICRRL  666 (671)
Q Consensus       662 V~Rr~  666 (671)
                      |.|..
T Consensus       113 VaR~~  117 (124)
T KOG3553|consen  113 VARQS  117 (124)
T ss_pred             HHhhc
Confidence            76643

>KOG1892|consensus

Probab=98.78  E-value=9.3e-09  Score=118.72  Aligned_cols=90  Identities=27%  Similarity=0.564  Sum_probs=79.1

Q ss_pred             cceeeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhc
Q psy1156         574 CTFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTI  653 (671)
Q Consensus       574 ~~~~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~s  653 (671)
                      .++.+|+|.|.   +++|++|+..++......||||++|.+||+|+.+|||..||++|.|||+++.+++.+.|..+|...
T Consensus       932 pei~~vtL~Kn---nGmGLSIVAAkGaGq~klGIYvKsVV~GgaAd~DGRL~aGDQLLsVdG~SLiGisQErAA~lmtrt 1008 (1629)
T KOG1892|consen  932 PEIITVTLKKN---NGMGLSIVAAKGAGQRKLGIYVKSVVEGGAADHDGRLEAGDQLLSVDGHSLIGISQERAARLMTRT 1008 (1629)
T ss_pred             CceEEEEEecc---CCceEEEEeeccCCccccceEEEEeccCCccccccccccCceeeeecCcccccccHHHHHHHHhcc
Confidence            35678889887   689999987766555568999999999999999999999999999999999999999999999988


Q ss_pred             CCCcEEEEEEeCCC
Q psy1156         654 KNGSISLHICRRLK  667 (671)
Q Consensus       654 g~~~VtL~V~Rr~~  667 (671)
                      + ..|.|.|.....
T Consensus      1009 g-~vV~leVaKqgA 1021 (1629)
T KOG1892|consen 1009 G-NVVHLEVAKQGA 1021 (1629)
T ss_pred             C-CeEEEehhhhhh
Confidence            5 789999976654

>cd00136 PDZ PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif)

Probab=98.75  E-value=5.1e-08  Score=80.47  Aligned_cols=67  Identities=31%  Similarity=0.532  Sum_probs=59.0

Q ss_pred             cccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhcCC-CeEEEEE
Q psy1156         401 ELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGP-LNMDLLI  474 (671)
Q Consensus       401 ~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~~g-~~V~L~V  474 (671)
                      +|||.+.....      .+++|..|.+++||+.+| |++||+|++|||.++.++++.++..+++... ..+.|+|
T Consensus         2 ~~G~~~~~~~~------~~~~V~~v~~~s~a~~~g-l~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v   69 (70)
T cd00136           2 GLGFSIRGGTE------GGVVVLSVEPGSPAERAG-LQAGDVILAVNGTDVKNLTLEDVAELLKKEVGEKVTLTV   69 (70)
T ss_pred             CccEEEecCCC------CCEEEEEeCCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhhCCCCeEEEEE
Confidence            68999886542      489999999999999999 9999999999999999999999999999544 6788776

Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(pos

>cd00988 PDZ_CTP_protease PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts

Probab=98.74  E-value=4.5e-08  Score=83.87  Aligned_cols=71  Identities=28%  Similarity=0.483  Sum_probs=60.6

Q ss_pred             CcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcCCCcEEEEEEeC
Q psy1156         588 KGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKNGSISLHICRR  665 (671)
Q Consensus       588 ~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg~~~VtL~V~Rr  665 (671)
                      .+||+.+....      .+++|..|.+++||+++| |++||+|++|||+++.++++.++..+++......+.|.|.|.
T Consensus         2 ~~lG~~~~~~~------~~~~V~~v~~~s~a~~~g-l~~GD~I~~vng~~i~~~~~~~~~~~l~~~~~~~i~l~v~r~   72 (85)
T cd00988           2 GGIGLELKYDD------GGLVITSVLPGSPAAKAG-IKAGDIIVAIDGEPVDGLSLEDVVKLLRGKAGTKVRLTLKRG   72 (85)
T ss_pred             eEEEEEEEEcC------CeEEEEEecCCCCHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCEEEEEEEcC
Confidence            46888886432      379999999999999998 999999999999999988889999988765446799999886

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>KOG3571|consensus

Probab=98.71  E-value=3e-08  Score=109.00  Aligned_cols=88  Identities=30%  Similarity=0.562  Sum_probs=75.4

Q ss_pred             ceeeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhc-
Q psy1156         575 TFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTI-  653 (671)
Q Consensus       575 ~~~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~s-  653 (671)
                      .+.+|.|.-.. ..-||++|+|..+. .|+.||||.+|+++|+.|.+|||.+||.||.||.+++.+++-.+||..|+++ 
T Consensus       249 nIITV~LnMe~-vnfLGiSivgqsn~-rgDggIYVgsImkgGAVA~DGRIe~GDMiLQVNevsFENmSNd~AVrvLREaV  326 (626)
T KOG3571|consen  249 NIITVTLNMET-VNFLGISIVGQSNA-RGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNEVSFENMSNDQAVRVLREAV  326 (626)
T ss_pred             eEEEEEecccc-cccceeEeecccCc-CCCCceEEeeeccCceeeccCccCccceEEEeeecchhhcCchHHHHHHHHHh
Confidence            55677776665 35699999986553 4677999999999999999999999999999999999999999999999986 


Q ss_pred             -CCCcEEEEEEe
Q psy1156         654 -KNGSISLHICR  664 (671)
Q Consensus       654 -g~~~VtL~V~R  664 (671)
                       ..+.++|+|+.
T Consensus       327 ~~~gPi~ltvAk  338 (626)
T KOG3571|consen  327 SRPGPIKLTVAK  338 (626)
T ss_pred             ccCCCeEEEEee
Confidence             34679999864

>PF13180 PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_A 2PZD_B 2P3W_A 1VCW_C 1TE0_B 1SOZ_C 1SOT_C

Probab=98.66  E-value=7.7e-08  Score=82.70  Aligned_cols=73  Identities=27%  Similarity=0.493  Sum_probs=57.8

Q ss_pred             cccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHh--cCCCeEEEEEEeCC
Q psy1156         401 ELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIIS--SGPLNMDLLISRTS  478 (671)
Q Consensus       401 ~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~--~~g~~V~L~V~R~~  478 (671)
                      .||+.+......     .|++|..|.++|||+++| |++||+|++|||..+..  ..+....+.  ..+..+.|+|.|.+
T Consensus         2 ~lGv~~~~~~~~-----~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~--~~~~~~~l~~~~~g~~v~l~v~R~g   73 (82)
T PF13180_consen    2 GLGVTVQNLSDT-----GGVVVVSVIPGSPAAKAG-LQPGDIILAINGKPVNS--SEDLVNILSKGKPGDTVTLTVLRDG   73 (82)
T ss_dssp             E-SEEEEECSCS-----SSEEEEEESTTSHHHHTT-S-TTEEEEEETTEESSS--HHHHHHHHHCSSTTSEEEEEEEETT
T ss_pred             EECeEEEEccCC-----CeEEEEEeCCCCcHHHCC-CCCCcEEEEECCEEcCC--HHHHHHHHHhCCCCCEEEEEEEECC
Confidence            578777764431     689999999999999999 99999999999999954  455656663  57899999999987


Q ss_pred             ccc
Q psy1156         479 LKK  481 (671)
Q Consensus       479 ~~~  481 (671)
                      +..
T Consensus        74 ~~~   76 (82)
T PF13180_consen   74 EEL   76 (82)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            643

...

>KOG1892|consensus

Probab=98.64  E-value=6.5e-08  Score=111.93  Aligned_cols=91  Identities=24%  Similarity=0.450  Sum_probs=79.2

Q ss_pred             CCCeEEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHh
Q psy1156         385 QEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIIS  464 (671)
Q Consensus       385 ~~~~~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~  464 (671)
                      +.++.+|+|.|.   +++|++|+...+.+.. ..||||.+|++||+|+..|+|..||++|.|||+++.|.+.+.|..+|.
T Consensus       931 ~pei~~vtL~Kn---nGmGLSIVAAkGaGq~-klGIYvKsVV~GgaAd~DGRL~aGDQLLsVdG~SLiGisQErAA~lmt 1006 (1629)
T KOG1892|consen  931 EPEIITVTLKKN---NGMGLSIVAAKGAGQR-KLGIYVKSVVEGGAADHDGRLEAGDQLLSVDGHSLIGISQERAARLMT 1006 (1629)
T ss_pred             CCceEEEEEecc---CCceEEEEeeccCCcc-ccceEEEEeccCCccccccccccCceeeeecCcccccccHHHHHHHHh
Confidence            467899999874   6889988865543322 389999999999999999999999999999999999999999999999


Q ss_pred             cCCCeEEEEEEeCCc
Q psy1156         465 SGPLNMDLLISRTSL  479 (671)
Q Consensus       465 ~~g~~V~L~V~R~~~  479 (671)
                      ..+..|+|.|...+.
T Consensus      1007 rtg~vV~leVaKqgA 1021 (1629)
T KOG1892|consen 1007 RTGNVVHLEVAKQGA 1021 (1629)
T ss_pred             ccCCeEEEehhhhhh
Confidence            999999999976544

>KOG3553|consensus

Probab=98.57  E-value=1.8e-08  Score=89.80  Aligned_cols=76  Identities=29%  Similarity=0.342  Sum_probs=64.5

Q ss_pred             cccEEEeeecCCC-----CCC-cCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhcCCCeEEEEE
Q psy1156         401 ELGIYIAKIKNSS-----EGN-IGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLI  474 (671)
Q Consensus       401 ~LGfsI~gg~~~~-----~g~-~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~~g~~V~L~V  474 (671)
                      -+||.|.||.+..     .+. +.||||.+|..||||+.+| |+.+|.|++|||-++.-++|++|+..+++ ...+.+.|
T Consensus        36 ~~GFkIGGGIDQDp~k~Pf~ytD~GiYvT~V~eGsPA~~AG-LrihDKIlQvNG~DfTMvTHd~Avk~i~k-~~vl~mLV  113 (124)
T KOG3553|consen   36 ILGFKIGGGIDQDPSKNPFSYTDKGIYVTRVSEGSPAEIAG-LRIHDKILQVNGWDFTMVTHDQAVKRITK-EEVLRMLV  113 (124)
T ss_pred             EEEEEeccccCCCcccCCCCcCCccEEEEEeccCChhhhhc-ceecceEEEecCceeEEEEhHHHHHHhhH-hHHHHHHH
Confidence            4699999987754     222 5899999999999999999 99999999999999999999999999985 45667777


Q ss_pred             EeCC
Q psy1156         475 SRTS  478 (671)
Q Consensus       475 ~R~~  478 (671)
                      .|..
T Consensus       114 aR~~  117 (124)
T KOG3553|consen  114 ARQS  117 (124)
T ss_pred             Hhhc
Confidence            6644

>KOG3606|consensus

Probab=98.52  E-value=1.5e-07  Score=96.83  Aligned_cols=92  Identities=27%  Similarity=0.504  Sum_probs=77.7

Q ss_pred             CCCeEEEEEEeCCCCCcccEEEeeecC-----CCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHH
Q psy1156         385 QEGQTMVRVNRRDFNEELGIYIAKIKN-----SSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQA  459 (671)
Q Consensus       385 ~~~~~~V~L~k~~~~~~LGfsI~gg~~-----~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~a  459 (671)
                      .+.-+.|+|.|-....+|||.|+.|..     ++...+.||||++++|||.|+..|+|-+.|+|++|||+.|.+.+.+++
T Consensus       156 PEtHRRVRL~khG~ekPLGFYIRDG~SVRVtp~GlekvpGIFISRlVpGGLAeSTGLLaVnDEVlEVNGIEVaGKTLDQV  235 (358)
T KOG3606|consen  156 PETHRRVRLHKHGSEKPLGFYIRDGTSVRVTPHGLEKVPGIFISRLVPGGLAESTGLLAVNDEVLEVNGIEVAGKTLDQV  235 (358)
T ss_pred             chhhhheehhhcCCCCCceEEEecCceEEeccccccccCceEEEeecCCccccccceeeecceeEEEcCEEeccccHHHH
Confidence            455677999997777999999997653     122346899999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCCeEEEEEEe
Q psy1156         460 KSIISSGPLNMDLLISR  476 (671)
Q Consensus       460 v~~L~~~g~~V~L~V~R  476 (671)
                      -.||-.-...+.++|..
T Consensus       236 TDMMvANshNLIiTVkP  252 (358)
T KOG3606|consen  236 TDMMVANSHNLIITVKP  252 (358)
T ss_pred             HHHHhhcccceEEEecc
Confidence            99998666777777743

>cd00988 PDZ_CTP_protease PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts

Probab=98.50  E-value=6.4e-07  Score=76.66  Aligned_cols=70  Identities=23%  Similarity=0.534  Sum_probs=60.1

Q ss_pred             CcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhc-CCCeEEEEEEeC
Q psy1156         400 EELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISS-GPLNMDLLISRT  477 (671)
Q Consensus       400 ~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~-~g~~V~L~V~R~  477 (671)
                      .+||+.+....       .+++|..|.+++||+++| |++||+|++|||..+.++++.++..++.. .+..+.|+|.|.
T Consensus         2 ~~lG~~~~~~~-------~~~~V~~v~~~s~a~~~g-l~~GD~I~~vng~~i~~~~~~~~~~~l~~~~~~~i~l~v~r~   72 (85)
T cd00988           2 GGIGLELKYDD-------GGLVITSVLPGSPAAKAG-IKAGDIIVAIDGEPVDGLSLEDVVKLLRGKAGTKVRLTLKRG   72 (85)
T ss_pred             eEEEEEEEEcC-------CeEEEEEecCCCCHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCEEEEEEEcC
Confidence            46888876422       679999999999999999 99999999999999999888888888864 467889999886

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>KOG3552|consensus

Probab=98.49  E-value=1.7e-07  Score=108.69  Aligned_cols=78  Identities=27%  Similarity=0.594  Sum_probs=69.0

Q ss_pred             ceeeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcC
Q psy1156         575 TFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIK  654 (671)
Q Consensus       575 ~~~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg  654 (671)
                      ..+.|.+.+.   ..|||.++.|       .+|+|..|.+|||+.  |.|.+||+||+|||.+|.+++++.|+++++++.
T Consensus        55 ~pr~vq~~r~---~~lGFgfvag-------rPviVr~VT~GGps~--GKL~PGDQIl~vN~Epv~daprervIdlvRace  122 (1298)
T KOG3552|consen   55 EPRQVQLQRN---ASLGFGFVAG-------RPVIVRFVTEGGPSI--GKLQPGDQILAVNGEPVKDAPRERVIDLVRACE  122 (1298)
T ss_pred             cchhhhhhcc---ccccceeecC-------CceEEEEecCCCCcc--ccccCCCeEEEecCcccccccHHHHHHHHHHHh
Confidence            4567888877   4678877766       269999999999998  889999999999999999999999999999994


Q ss_pred             CCcEEEEEEeC
Q psy1156         655 NGSISLHICRR  665 (671)
Q Consensus       655 ~~~VtL~V~Rr  665 (671)
                       ..|.|+|++.
T Consensus       123 -~sv~ltV~qP  132 (1298)
T KOG3552|consen  123 -SSVNLTVCQP  132 (1298)
T ss_pred             -hhcceEEecc
Confidence             8999999996

>cd00989 PDZ_metalloprotease PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms

Probab=98.47  E-value=9.8e-07  Score=74.37  Aligned_cols=59  Identities=29%  Similarity=0.400  Sum_probs=51.3

Q ss_pred             ceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcCCCcEEEEEEeCCC
Q psy1156         606 GIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKNGSISLHICRRLK  667 (671)
Q Consensus       606 GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg~~~VtL~V~Rr~~  667 (671)
                      +++|..|.++++|+++| |++||+|++|||.++.  ++.++..+|.......+.|.|.|+..
T Consensus        13 ~~~V~~v~~~s~a~~~g-l~~GD~I~~ing~~i~--~~~~~~~~l~~~~~~~~~l~v~r~~~   71 (79)
T cd00989          13 EPVIGEVVPGSPAAKAG-LKAGDRILAINGQKIK--SWEDLVDAVQENPGKPLTLTVERNGE   71 (79)
T ss_pred             CcEEEeECCCCHHHHcC-CCCCCEEEEECCEECC--CHHHHHHHHHHCCCceEEEEEEECCE
Confidence            57999999999999999 9999999999999998  67888888877644678899987653

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>cd00991 PDZ_archaeal_metalloprotease PDZ domain of archaeal zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms

Probab=98.46  E-value=6.5e-07  Score=76.67  Aligned_cols=60  Identities=22%  Similarity=0.301  Sum_probs=52.6

Q ss_pred             cceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhc-CCCcEEEEEEeCCC
Q psy1156         605 IGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTI-KNGSISLHICRRLK  667 (671)
Q Consensus       605 ~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~s-g~~~VtL~V~Rr~~  667 (671)
                      .|++|.+|.++|+|+++| |++||+|++|||.++.  ++.++..+|... +...+.|.|.|+.+
T Consensus        10 ~Gv~V~~V~~~spa~~aG-L~~GDiI~~Ing~~v~--~~~d~~~~l~~~~~g~~v~l~v~r~g~   70 (79)
T cd00991          10 AGVVIVGVIVGSPAENAV-LHTGDVIYSINGTPIT--TLEDFMEALKPTKPGEVITVTVLPSTT   70 (79)
T ss_pred             CcEEEEEECCCChHHhcC-CCCCCEEEEECCEEcC--CHHHHHHHHhcCCCCCEEEEEEEECCE
Confidence            489999999999999999 9999999999999999  778888888864 24679999988753

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>cd00990 PDZ_glycyl_aminopeptidase PDZ domain associated with archaeal and bacterial M61 glycyl-aminopeptidases

Probab=98.35  E-value=2.2e-06  Score=72.63  Aligned_cols=66  Identities=23%  Similarity=0.326  Sum_probs=50.7

Q ss_pred             ccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcCCCcEEEEEEeCC
Q psy1156         590 LGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKNGSISLHICRRL  666 (671)
Q Consensus       590 LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg~~~VtL~V~Rr~  666 (671)
                      ||+.+....      .|++|..|.++|+|+++| |++||+|++|||.++.+  +.+++..++  ....+.|+|.|+.
T Consensus         3 ~G~~~~~~~------~~~~V~~V~~~s~a~~aG-l~~GD~I~~Ing~~v~~--~~~~l~~~~--~~~~v~l~v~r~g   68 (80)
T cd00990           3 LGLTLDKEE------GLGKVTFVRDDSPADKAG-LVAGDELVAVNGWRVDA--LQDRLKEYQ--AGDPVELTVFRDD   68 (80)
T ss_pred             ccEEEEccC------CcEEEEEECCCChHHHhC-CCCCCEEEEECCEEhHH--HHHHHHhcC--CCCEEEEEEEECC
Confidence            677774321      368999999999999999 99999999999999984  445444332  2357889988865

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand is presumed to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>cd00986 PDZ_LON_protease PDZ domain of ATP-dependent LON serine proteases

Probab=98.28  E-value=3e-06  Score=72.10  Aligned_cols=59  Identities=27%  Similarity=0.490  Sum_probs=50.2

Q ss_pred             cceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhc-CCCcEEEEEEeCCC
Q psy1156         605 IGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTI-KNGSISLHICRRLK  667 (671)
Q Consensus       605 ~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~s-g~~~VtL~V~Rr~~  667 (671)
                      .|++|..|.++|+|+. | |++||+|++|||.++.  +.+++..+|... ....+.|.|.|+.+
T Consensus         8 ~Gv~V~~V~~~s~A~~-g-L~~GD~I~~Ing~~v~--~~~~~~~~l~~~~~~~~v~l~v~r~g~   67 (79)
T cd00986           8 HGVYVTSVVEGMPAAG-K-LKAGDHIIAVDGKPFK--EAEELIDYIQSKKEGDTVKLKVKREEK   67 (79)
T ss_pred             cCEEEEEECCCCchhh-C-CCCCCEEEEECCEECC--CHHHHHHHHHhCCCCCEEEEEEEECCE
Confidence            3789999999999986 8 9999999999999998  678888888753 34579999988754

Most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this bacterial subfamily of protease-associated PDZ domains a C-terminal beta-strand is thought to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>KOG3651|consensus

Probab=98.26  E-value=2.4e-06  Score=89.34  Aligned_cols=82  Identities=21%  Similarity=0.325  Sum_probs=74.3

Q ss_pred             EEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhcCCCe
Q psy1156         390 MVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLN  469 (671)
Q Consensus       390 ~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~~g~~  469 (671)
                      .|.|.|. ..+-.||+|.||....    +++||..|..+.||++.|+++.||+|++|||+.|.+.+.-++..+++.+.+.
T Consensus         7 ~v~ltKD-~~nliGISIGGGapyC----PClYiVQvFD~tPAa~dG~i~~GDEi~avNg~svKGktKveVAkmIQ~~~~e   81 (429)
T KOG3651|consen    7 TVELTKD-EKNLIGISIGGGAPYC----PCLYIVQVFDKTPAAKDGRIRCGDEIVAVNGISVKGKTKVEVAKMIQVSLNE   81 (429)
T ss_pred             cEEEeec-cccceeEEecCCCCcC----CeEEEEEeccCCchhccCccccCCeeEEecceeecCccHHHHHHHHHHhccc
Confidence            6888885 3578899999998877    8899999999999999999999999999999999999999999999988888


Q ss_pred             EEEEEEe
Q psy1156         470 MDLLISR  476 (671)
Q Consensus       470 V~L~V~R  476 (671)
                      |.+.+..
T Consensus        82 V~IhyNK   88 (429)
T KOG3651|consen   82 VKIHYNK   88 (429)
T ss_pred             eEEEehh
Confidence            8888743

>cd00987 PDZ_serine_protease PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis

Probab=98.25  E-value=4.6e-06  Score=71.78  Aligned_cols=60  Identities=30%  Similarity=0.460  Sum_probs=50.9

Q ss_pred             cceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcC-CCcEEEEEEeCCC
Q psy1156         605 IGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIK-NGSISLHICRRLK  667 (671)
Q Consensus       605 ~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg-~~~VtL~V~Rr~~  667 (671)
                      .|++|..|.++++|+++| |++||+|++|||.++.  +..++..++.... ...+.|.|.|+..
T Consensus        24 ~g~~V~~v~~~s~a~~~g-l~~GD~I~~Ing~~i~--~~~~~~~~l~~~~~~~~i~l~v~r~g~   84 (90)
T cd00987          24 KGVLVASVDPGSPAAKAG-LKPGDVILAVNGKPVK--SVADLRRALAELKPGDKVTLTVLRGGK   84 (90)
T ss_pred             CEEEEEEECCCCHHHHcC-CCcCCEEEEECCEECC--CHHHHHHHHHhcCCCCEEEEEEEECCE
Confidence            489999999999999999 9999999999999998  5667777776652 3678999988753

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>KOG0609|consensus

Probab=98.22  E-value=3.4e-06  Score=94.29  Aligned_cols=87  Identities=28%  Similarity=0.457  Sum_probs=76.9

Q ss_pred             CCCCeEEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHH
Q psy1156         384 SQEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSII  463 (671)
Q Consensus       384 ~~~~~~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L  463 (671)
                      ....++.|.|+|. .+++||++|.....      ..++|++|+.||.|++.|.|++||+|++|||+.|.+....++..+|
T Consensus       119 ~~~~vriv~i~k~-~~eplG~Tik~~e~------~~~~vARI~~GG~~~r~glL~~GD~i~EvNGi~v~~~~~~e~q~~l  191 (542)
T KOG0609|consen  119 PVEAVRIVRIVKN-TGEPLGATIRVEED------TKVVVARIMHGGMADRQGLLHVGDEILEVNGISVANKSPEELQELL  191 (542)
T ss_pred             ccceeEEEEEeec-CCCccceEEEeccC------CccEEeeeccCCcchhccceeeccchheecCeecccCCHHHHHHHH
Confidence            3456788999986 36999999996442      3599999999999999999999999999999999999999999999


Q ss_pred             hcCCCeEEEEEEeC
Q psy1156         464 SSGPLNMDLLISRT  477 (671)
Q Consensus       464 ~~~g~~V~L~V~R~  477 (671)
                      +...+.++|+|...
T Consensus       192 ~~~~G~itfkiiP~  205 (542)
T KOG0609|consen  192 RNSRGSITFKIIPS  205 (542)
T ss_pred             HhCCCcEEEEEccc
Confidence            98889999999654

>KOG3651|consensus

Probab=98.21  E-value=4.3e-06  Score=87.49  Aligned_cols=81  Identities=30%  Similarity=0.505  Sum_probs=71.0

Q ss_pred             eEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcCCCc
Q psy1156         578 TIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKNGS  657 (671)
Q Consensus       578 ~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg~~~  657 (671)
                      +|+|+|.. .+-+|++|-||...   +.-+||..|..++||+++|+|+.||.|++|||++|.+.+-.++.++++.+. +.
T Consensus         7 ~v~ltKD~-~nliGISIGGGapy---CPClYiVQvFD~tPAa~dG~i~~GDEi~avNg~svKGktKveVAkmIQ~~~-~e   81 (429)
T KOG3651|consen    7 TVELTKDE-KNLIGISIGGGAPY---CPCLYIVQVFDKTPAAKDGRIRCGDEIVAVNGISVKGKTKVEVAKMIQVSL-NE   81 (429)
T ss_pred             cEEEeecc-ccceeEEecCCCCc---CCeEEEEEeccCCchhccCccccCCeeEEecceeecCccHHHHHHHHHHhc-cc
Confidence            68898886 57899999877543   335899999999999999999999999999999999999999999999884 88


Q ss_pred             EEEEEE
Q psy1156         658 ISLHIC  663 (671)
Q Consensus       658 VtL~V~  663 (671)
                      |.++.-
T Consensus        82 V~IhyN   87 (429)
T KOG3651|consen   82 VKIHYN   87 (429)
T ss_pred             eEEEeh
Confidence            888763

>PLN00049 carboxyl-terminal processing protease; Provisional

Probab=98.21  E-value=5.4e-06  Score=91.54  Aligned_cols=78  Identities=27%  Similarity=0.396  Sum_probs=61.3

Q ss_pred             CcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcCCCcEEEEEEeCC
Q psy1156         588 KGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKNGSISLHICRRL  666 (671)
Q Consensus       588 ~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg~~~VtL~V~Rr~  666 (671)
                      .++|+.+.-.........|++|..|.++|||+++| |++||+|++|||++|.+++..++..+|+......|.|+|.|..
T Consensus        85 ~GiG~~~~~~~~~~~~~~g~~V~~V~~~SPA~~aG-l~~GD~Iv~InG~~v~~~~~~~~~~~l~g~~g~~v~ltv~r~g  162 (389)
T PLN00049         85 TGVGLEVGYPTGSDGPPAGLVVVAPAPGGPAARAG-IRPGDVILAIDGTSTEGLSLYEAADRLQGPEGSSVELTLRRGP  162 (389)
T ss_pred             eEEEEEEEEccCCCCccCcEEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhcCCCCEEEEEEEECC
Confidence            56788775322210001378999999999999999 9999999999999999888899998887654467899988754

>KOG3542|consensus

Probab=98.18  E-value=2.1e-06  Score=96.96  Aligned_cols=84  Identities=27%  Similarity=0.548  Sum_probs=74.3

Q ss_pred             ceeeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcC
Q psy1156         575 TFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIK  654 (671)
Q Consensus       575 ~~~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg  654 (671)
                      ..+.|.|+|..-...|-|.+.||.+..   .||||.+|.||+-|++.| |+.||+||+|||++..+++...|+++|+.. 
T Consensus       535 K~RqviLtk~sre~pl~f~L~GGsEkG---fgifV~~V~pgskAa~~G-lKRgDqilEVNgQnfenis~~KA~eiLrnn-  609 (1283)
T KOG3542|consen  535 KPRQVILTKASREDPLMFRLVGGSEKG---FGIFVAEVFPGSKAAREG-LKRGDQILEVNGQNFENISAKKAEEILRNN-  609 (1283)
T ss_pred             cceeEEEecccccCCceeEeccCcccc---ceeEEeeecCCchHHHhh-hhhhhhhhhccccchhhhhHHHHHHHhcCC-
Confidence            456889998766789999999998765   699999999999999999 999999999999999999999999999975 


Q ss_pred             CCcEEEEEEe
Q psy1156         655 NGSISLHICR  664 (671)
Q Consensus       655 ~~~VtL~V~R  664 (671)
                       -.++|+|..
T Consensus       610 -thLtltvKt  618 (1283)
T KOG3542|consen  610 -THLTLTVKT  618 (1283)
T ss_pred             -ceEEEEEec
Confidence             467777754

>cd00990 PDZ_glycyl_aminopeptidase PDZ domain associated with archaeal and bacterial M61 glycyl-aminopeptidases

Probab=98.18  E-value=7.2e-06  Score=69.45  Aligned_cols=67  Identities=27%  Similarity=0.362  Sum_probs=51.7

Q ss_pred             ccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhcCCCeEEEEEEeCCc
Q psy1156         402 LGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISRTSL  479 (671)
Q Consensus       402 LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~~g~~V~L~V~R~~~  479 (671)
                      +|+.+....       .+++|..|.+++||+.+| |++||+|++|||..+..  ...+...+ ..+..+.|++.|.+.
T Consensus         3 ~G~~~~~~~-------~~~~V~~V~~~s~a~~aG-l~~GD~I~~Ing~~v~~--~~~~l~~~-~~~~~v~l~v~r~g~   69 (80)
T cd00990           3 LGLTLDKEE-------GLGKVTFVRDDSPADKAG-LVAGDELVAVNGWRVDA--LQDRLKEY-QAGDPVELTVFRDDR   69 (80)
T ss_pred             ccEEEEccC-------CcEEEEEECCCChHHHhC-CCCCCEEEEECCEEhHH--HHHHHHhc-CCCCEEEEEEEECCE
Confidence            677665321       579999999999999999 99999999999999975  33333333 256788999988765

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand is presumed to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>TIGR00225 prc C-terminal peptidase (prc)

Probab=98.17  E-value=5.5e-06  Score=89.46  Aligned_cols=73  Identities=30%  Similarity=0.455  Sum_probs=61.1

Q ss_pred             CcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcCCCcEEEEEEeCCC
Q psy1156         588 KGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKNGSISLHICRRLK  667 (671)
Q Consensus       588 ~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg~~~VtL~V~Rr~~  667 (671)
                      .++|+.+....      .+++|..|.++|||+++| |++||+|++|||+++.+++..++..+|+......|.|+|.|...
T Consensus        51 ~~lG~~~~~~~------~~~~V~~V~~~spA~~aG-L~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~R~g~  123 (334)
T TIGR00225        51 EGIGIQVGMDD------GEIVIVSPFEGSPAEKAG-IKPGDKIIKINGKSVAGMSLDDAVALIRGKKGTKVSLEILRAGK  123 (334)
T ss_pred             EEEEEEEEEEC------CEEEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHhccCCCCCEEEEEEEeCCC
Confidence            56888875432      268999999999999999 99999999999999998888888888876545679999988753

A C-terminal peptidase with different substrates in different species including processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein in E.coli E.coli and H influenza have the most distal branch of the tree and their proteins have an N-terminal 200 amino acids that show no homology to other proteins in the database.

>KOG3552|consensus

Probab=98.15  E-value=1.8e-06  Score=100.50  Aligned_cols=78  Identities=21%  Similarity=0.381  Sum_probs=68.5

Q ss_pred             CeEEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhcC
Q psy1156         387 GQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSG  466 (671)
Q Consensus       387 ~~~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~~  466 (671)
                      .++.|++++.   ..|||.++.|        .+++|..|.+|||+.  |.|++||+|++|||.+|.+.+.+.++.+++.+
T Consensus        55 ~pr~vq~~r~---~~lGFgfvag--------rPviVr~VT~GGps~--GKL~PGDQIl~vN~Epv~daprervIdlvRac  121 (1298)
T KOG3552|consen   55 EPRQVQLQRN---ASLGFGFVAG--------RPVIVRFVTEGGPSI--GKLQPGDQILAVNGEPVKDAPRERVIDLVRAC  121 (1298)
T ss_pred             cchhhhhhcc---ccccceeecC--------CceEEEEecCCCCcc--ccccCCCeEEEecCcccccccHHHHHHHHHHH
Confidence            3577888663   5777777754        579999999999995  88999999999999999999999999999999


Q ss_pred             CCeEEEEEEeC
Q psy1156         467 PLNMDLLISRT  477 (671)
Q Consensus       467 g~~V~L~V~R~  477 (671)
                      ...|.|+|+++
T Consensus       122 e~sv~ltV~qP  132 (1298)
T KOG3552|consen  122 ESSVNLTVCQP  132 (1298)
T ss_pred             hhhcceEEecc
Confidence            99999999985

>cd00991 PDZ_archaeal_metalloprotease PDZ domain of archaeal zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms

Probab=98.15  E-value=9.6e-06  Score=69.42  Aligned_cols=60  Identities=22%  Similarity=0.336  Sum_probs=51.2

Q ss_pred             CcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhc--CCCeEEEEEEeCCcc
Q psy1156         418 GGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISS--GPLNMDLLISRTSLK  480 (671)
Q Consensus       418 ~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~--~g~~V~L~V~R~~~~  480 (671)
                      .|++|..|.+++||+.+| |++||+|++|||..+..  ..++...+..  .+..+.|++.|.++.
T Consensus        10 ~Gv~V~~V~~~spa~~aG-L~~GDiI~~Ing~~v~~--~~d~~~~l~~~~~g~~v~l~v~r~g~~   71 (79)
T cd00991          10 AGVVIVGVIVGSPAENAV-LHTGDVIYSINGTPITT--LEDFMEALKPTKPGEVITVTVLPSTTK   71 (79)
T ss_pred             CcEEEEEECCCChHHhcC-CCCCCEEEEECCEEcCC--HHHHHHHHhcCCCCCEEEEEEEECCEE
Confidence            689999999999999999 99999999999999984  4567777764  367899999987653

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>COG0793 Prc Periplasmic protease [Cell envelope biogenesis, outer membrane]

Probab=98.15  E-value=6.5e-06  Score=91.43  Aligned_cols=74  Identities=27%  Similarity=0.376  Sum_probs=65.6

Q ss_pred             CCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcCCCcEEEEEEeCC
Q psy1156         587 KKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKNGSISLHICRRL  666 (671)
Q Consensus       587 ~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg~~~VtL~V~Rr~  666 (671)
                      .+++|+.+.-...     .+++|.++.+++||+++| |++||+|+.|||.++.+++..+|+..|+..+...|+|+|.|..
T Consensus        99 ~~GiG~~i~~~~~-----~~~~V~s~~~~~PA~kag-i~~GD~I~~IdG~~~~~~~~~~av~~irG~~Gt~V~L~i~r~~  172 (406)
T COG0793          99 FGGIGIELQMEDI-----GGVKVVSPIDGSPAAKAG-IKPGDVIIKIDGKSVGGVSLDEAVKLIRGKPGTKVTLTILRAG  172 (406)
T ss_pred             ccceeEEEEEecC-----CCcEEEecCCCChHHHcC-CCCCCEEEEECCEEccCCCHHHHHHHhCCCCCCeEEEEEEEcC
Confidence            3788888876542     378999999999999999 9999999999999999999999999999876567999999973

>KOG3606|consensus

Probab=98.14  E-value=3.7e-06  Score=86.84  Aligned_cols=85  Identities=25%  Similarity=0.372  Sum_probs=71.2

Q ss_pred             eeEEEeeCCCCCcccEEEecCCCCC---C---CCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHH
Q psy1156         577 HTIVFEKGPGKKGLGFTIVGGKDSP---R---GAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLF  650 (671)
Q Consensus       577 ~~V~L~K~~g~~~LGfsL~Gg~ds~---~---g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lL  650 (671)
                      +.|.|.|-....+|||.|+.|....   .   ...||||+++.|||.|+..|-|-+.|+||||||+.|.+.+..++.+++
T Consensus       160 RRVRL~khG~ekPLGFYIRDG~SVRVtp~GlekvpGIFISRlVpGGLAeSTGLLaVnDEVlEVNGIEVaGKTLDQVTDMM  239 (358)
T KOG3606|consen  160 RRVRLHKHGSEKPLGFYIRDGTSVRVTPHGLEKVPGIFISRLVPGGLAESTGLLAVNDEVLEVNGIEVAGKTLDQVTDMM  239 (358)
T ss_pred             hheehhhcCCCCCceEEEecCceEEeccccccccCceEEEeecCCccccccceeeecceeEEEcCEEeccccHHHHHHHH
Confidence            4678887766789999999886532   1   246999999999999999999999999999999999999999999998


Q ss_pred             HhcCCCcEEEEE
Q psy1156         651 KTIKNGSISLHI  662 (671)
Q Consensus       651 K~sg~~~VtL~V  662 (671)
                      -+.. -.+.++|
T Consensus       240 vANs-hNLIiTV  250 (358)
T KOG3606|consen  240 VANS-HNLIITV  250 (358)
T ss_pred             hhcc-cceEEEe
Confidence            7653 4555555

>KOG4371|consensus

Probab=98.10  E-value=1.1e-05  Score=95.05  Aligned_cols=181  Identities=22%  Similarity=0.411  Sum_probs=127.3

Q ss_pred             EEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhcCCC
Q psy1156         389 TMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPL  468 (671)
Q Consensus       389 ~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~~g~  468 (671)
                      +.|.+-+ ++ +.||..+....       .-+-|+...-.+.-.+-. |.+||.++.|||+.+++.-|.+++.+++..+.
T Consensus      1149 i~~~~~r-~~-~~l~~~~a~~~-------~~~~~~~~~~~~~~~~pd-~~~g~~l~~~n~i~~~~~~~~~~~~~~~~~~~ 1218 (1332)
T KOG4371|consen 1149 IDVELDR-NE-GSLGVQIASLS-------GRVCIKQLTSEPAISHPD-IRVGDVLLYVNGIAVEGKVHQEVVAMLRGGGD 1218 (1332)
T ss_pred             ccccCCC-CC-CCCCceeccCc-------cceehhhcccCCCCCCCC-cchhhhhhhccceeeechhhHHHHHHHhccCc
Confidence            3344433 43 89999888543       224444444333333334 99999999999999999999999999998899


Q ss_pred             eEEEEEEeCCcccccccccccccccccccccccccccccCCcccCCcccchhhhhhhccccccccchhhhhhcccccCCC
Q psy1156         469 NMDLLISRTSLKKSNAENEYNESHSREKKSKETRFSLDKQNDFESSNEQDKNNQKRLFQKNCHSINNKLLRKAIISTGSI  548 (671)
Q Consensus       469 ~V~L~V~R~~~~~~~a~~~~~~~~s~~~~~~~~~ss~d~e~~~~ssp~~~k~s~~~~~q~~~~s~~~~~~r~~v~s~~s~  548 (671)
                      .|.|.|+|........                                 +                       ..+... 
T Consensus      1219 ~~~~~~~r~~~~~~d~---------------------------------~-----------------------~~s~~~- 1241 (1332)
T KOG4371|consen 1219 RVVLGVQRPPPAYSDQ---------------------------------H-----------------------HASSTS- 1241 (1332)
T ss_pred             eEEEEeecCCcccccc---------------------------------h-----------------------hhhhhc-
Confidence            9999999865421110                                 0                       000000 


Q ss_pred             CCchhhhhhccCCccCCCCCCCCcccceeeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCC
Q psy1156         549 SGDEEETILTSTNFCTLPRRPRSAICTFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGD  628 (671)
Q Consensus       549 s~d~~~s~~~s~~~~~lP~~p~s~~~~~~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GD  628 (671)
                       .+                      ...+.|.|.+.+ ..++|+.+.....+    .|+||..|..++.|...|.||+||
T Consensus      1242 -~~----------------------~~l~~~~~~~~p-~~~~~~~~~~~~~s----~~~~~~~~~~~~~a~~~~~~r~g~ 1293 (1332)
T KOG4371|consen 1242 -AS----------------------APLISVMLLKKP-MATLGLSLAKRTMS----DGIFIRNIAQDSAASSEGTLRVGD 1293 (1332)
T ss_pred             -cc----------------------chhhhheeeecc-cccccccccccCcC----Cceeeecccccccccccccccccc
Confidence             00                      011234444444 47899998766554    489999999999999999999999


Q ss_pred             EEEEECCeecCCCCHHHHHHHHHhcCCCcEEEEEEeC
Q psy1156         629 EILAINGQVCHDLTHLEAISLFKTIKNGSISLHICRR  665 (671)
Q Consensus       629 rILeVNG~sV~~lSheEAV~lLK~sg~~~VtL~V~Rr  665 (671)
                      +++..+|+++.+.+-.+..+.++=. .+.|.++|.|.
T Consensus      1294 ~~~~~~~~~~~~~~p~~~l~~~~~v-~~p~~~~~~~~ 1329 (1332)
T KOG4371|consen 1294 RLVSLDGEPVDGFTPATILEKLKLV-QGPVQITVTRE 1329 (1332)
T ss_pred             eeeccCCccCCCCChHHHHHHhhhc-cCchhheehhh
Confidence            9999999999998888888887743 57888888764

>cd00989 PDZ_metalloprotease PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms

Probab=98.06  E-value=1.8e-05  Score=66.66  Aligned_cols=59  Identities=25%  Similarity=0.442  Sum_probs=49.1

Q ss_pred             CcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhcC-CCeEEEEEEeCCc
Q psy1156         418 GGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSG-PLNMDLLISRTSL  479 (671)
Q Consensus       418 ~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~~-g~~V~L~V~R~~~  479 (671)
                      ..++|..|.+++||+.+| |++||+|++|||..+.+  ..++...+... +..+.+++.|.+.
T Consensus        12 ~~~~V~~v~~~s~a~~~g-l~~GD~I~~ing~~i~~--~~~~~~~l~~~~~~~~~l~v~r~~~   71 (79)
T cd00989          12 IEPVIGEVVPGSPAAKAG-LKAGDRILAINGQKIKS--WEDLVDAVQENPGKPLTLTVERNGE   71 (79)
T ss_pred             cCcEEEeECCCCHHHHcC-CCCCCEEEEECCEECCC--HHHHHHHHHHCCCceEEEEEEECCE
Confidence            458999999999999999 99999999999999975  45666666643 5688999988664

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>KOG3605|consensus

Probab=98.02  E-value=8.1e-06  Score=92.45  Aligned_cols=88  Identities=33%  Similarity=0.472  Sum_probs=72.5

Q ss_pred             ceeeEEEeeCCCCCcccEEEec-CCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhc
Q psy1156         575 TFHTIVFEKGPGKKGLGFTIVG-GKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTI  653 (671)
Q Consensus       575 ~~~~V~L~K~~g~~~LGfsL~G-g~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~s  653 (671)
                      ..+.|+|.|..| +.||+.|+. |+++..  .-|+|.....+|||+++|.|-.||+|++|||.++.++++..+...||..
T Consensus       645 ~qKEVvv~K~kG-EiLGVViVESGWGSmL--PTVViAnmm~~GpAarsgkLnIGDQiiaING~SLVGLPLstcQs~Ik~~  721 (829)
T KOG3605|consen  645 NQKEVVLEKHKG-EILGVVIVESGWGSIL--PTVVIANMMHGGPAARSGKLNIGDQIMSINGTSLVGLPLSTCQSIIKGL  721 (829)
T ss_pred             ccceeeeecccC-ceeeEEEEecCccccc--hHHHHHhcccCChhhhcCCccccceeEeecCceeccccHHHHHHHHhcc
Confidence            567899999885 899998864 444432  2478999999999999999999999999999999999999999999988


Q ss_pred             CCCc-EEEEEEeC
Q psy1156         654 KNGS-ISLHICRR  665 (671)
Q Consensus       654 g~~~-VtL~V~Rr  665 (671)
                      +..+ |.|.|.+=
T Consensus       722 KnQT~VkltiV~c  734 (829)
T KOG3605|consen  722 KNQTAVKLNIVSC  734 (829)
T ss_pred             cccceEEEEEecC
Confidence            6443 77766543

>PRK11186 carboxy-terminal protease; Provisional

Probab=97.95  E-value=2.1e-05  Score=92.03  Aligned_cols=73  Identities=22%  Similarity=0.280  Sum_probs=59.6

Q ss_pred             CcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECC-----eecCCCCHHHHHHHHHhcCCCcEEEEE
Q psy1156         588 KGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAING-----QVCHDLTHLEAISLFKTIKNGSISLHI  662 (671)
Q Consensus       588 ~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG-----~sV~~lSheEAV~lLK~sg~~~VtL~V  662 (671)
                      .++|+.+....      .+++|.+|.|||||++++.|++||+|++|||     ++|.+++..+++.+|+......|.|+|
T Consensus       244 ~GIGa~l~~~~------~~~~V~~vipGsPA~ka~gLk~GD~IlaVn~~g~~~~dv~g~~~~~vv~lirG~~Gt~V~LtV  317 (667)
T PRK11186        244 EGIGAVLQMDD------DYTVINSLVAGGPAAKSKKLSVGDKIVGVGQDGKPIVDVIGWRLDDVVALIKGPKGSKVRLEI  317 (667)
T ss_pred             eEEEEEEEEeC------CeEEEEEccCCChHHHhCCCCCCCEEEEECCCCCcccccccCCHHHHHHHhcCCCCCEEEEEE
Confidence            56788875432      2689999999999999844999999999994     466789999999999976556799999


Q ss_pred             EeCC
Q psy1156         663 CRRL  666 (671)
Q Consensus       663 ~Rr~  666 (671)
                      .|..
T Consensus       318 ~r~~  321 (667)
T PRK11186        318 LPAG  321 (667)
T ss_pred             EeCC
Confidence            8843

>KOG0609|consensus

Probab=97.93  E-value=2.4e-05  Score=87.69  Aligned_cols=84  Identities=29%  Similarity=0.427  Sum_probs=73.8

Q ss_pred             ceeeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcC
Q psy1156         575 TFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIK  654 (671)
Q Consensus       575 ~~~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg  654 (671)
                      ..+.|.|.|.. +..||.++.-..+.     .+||..|..||.|++.|.|++||.|++|||++|.+....++..+|+.+.
T Consensus       122 ~vriv~i~k~~-~eplG~Tik~~e~~-----~~~vARI~~GG~~~r~glL~~GD~i~EvNGi~v~~~~~~e~q~~l~~~~  195 (542)
T KOG0609|consen  122 AVRIVRIVKNT-GEPLGATIRVEEDT-----KVVVARIMHGGMADRQGLLHVGDEILEVNGISVANKSPEELQELLRNSR  195 (542)
T ss_pred             eeEEEEEeecC-CCccceEEEeccCC-----ccEEeeeccCCcchhccceeeccchheecCeecccCCHHHHHHHHHhCC
Confidence            46778888885 48999999865442     3899999999999999999999999999999999999999999999995


Q ss_pred             CCcEEEEEEeC
Q psy1156         655 NGSISLHICRR  665 (671)
Q Consensus       655 ~~~VtL~V~Rr  665 (671)
                       +.|+++|.-.
T Consensus       196 -G~itfkiiP~  205 (542)
T KOG0609|consen  196 -GSITFKIIPS  205 (542)
T ss_pred             -CcEEEEEccc
Confidence             9999998544

>TIGR00225 prc C-terminal peptidase (prc)

Probab=97.92  E-value=3.4e-05  Score=83.40  Aligned_cols=73  Identities=30%  Similarity=0.513  Sum_probs=61.0

Q ss_pred             CcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhc-CCCeEEEEEEeCC
Q psy1156         400 EELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISS-GPLNMDLLISRTS  478 (671)
Q Consensus       400 ~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~-~g~~V~L~V~R~~  478 (671)
                      .++|+.+....       .+++|..|.++|||+++| |++||+|++|||+.+.+++..++..++.. .+..+.|+|.|.+
T Consensus        51 ~~lG~~~~~~~-------~~~~V~~V~~~spA~~aG-L~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~R~g  122 (334)
T TIGR00225        51 EGIGIQVGMDD-------GEIVIVSPFEGSPAEKAG-IKPGDKIIKINGKSVAGMSLDDAVALIRGKKGTKVSLEILRAG  122 (334)
T ss_pred             EEEEEEEEEEC-------CEEEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHhccCCCCCEEEEEEEeCC
Confidence            46788776422       579999999999999999 99999999999999999887777777763 5778999999976


Q ss_pred             cc
Q psy1156         479 LK  480 (671)
Q Consensus       479 ~~  480 (671)
                      ..
T Consensus       123 ~~  124 (334)
T TIGR00225       123 KS  124 (334)
T ss_pred             CC
Confidence            43

A C-terminal peptidase with different substrates in different species including processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein in E.coli E.coli and H influenza have the most distal branch of the tree and their proteins have an N-terminal 200 amino acids that show no homology to other proteins in the database.

>PLN00049 carboxyl-terminal processing protease; Provisional

Probab=97.91  E-value=4.4e-05  Score=84.35  Aligned_cols=78  Identities=24%  Similarity=0.441  Sum_probs=61.2

Q ss_pred             CcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhc-CCCeEEEEEEeCC
Q psy1156         400 EELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISS-GPLNMDLLISRTS  478 (671)
Q Consensus       400 ~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~-~g~~V~L~V~R~~  478 (671)
                      .++|+.+....... +...+++|..|.++|||+++| |++||+|++|||++|.+++..++..+++. .+..|.|+|.|.+
T Consensus        85 ~GiG~~~~~~~~~~-~~~~g~~V~~V~~~SPA~~aG-l~~GD~Iv~InG~~v~~~~~~~~~~~l~g~~g~~v~ltv~r~g  162 (389)
T PLN00049         85 TGVGLEVGYPTGSD-GPPAGLVVVAPAPGGPAARAG-IRPGDVILAIDGTSTEGLSLYEAADRLQGPEGSSVELTLRRGP  162 (389)
T ss_pred             eEEEEEEEEccCCC-CccCcEEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhcCCCCEEEEEEEECC
Confidence            46777765322110 001379999999999999999 99999999999999999888888888873 5678999999876


Q ss_pred             c
Q psy1156         479 L  479 (671)
Q Consensus       479 ~  479 (671)
                      .
T Consensus       163 ~  163 (389)
T PLN00049        163 E  163 (389)
T ss_pred             E
Confidence            5

>cd00987 PDZ_serine_protease PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis

Probab=97.90  E-value=3.5e-05  Score=66.25  Aligned_cols=59  Identities=27%  Similarity=0.446  Sum_probs=49.1

Q ss_pred             CcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhc--CCCeEEEEEEeCCc
Q psy1156         418 GGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISS--GPLNMDLLISRTSL  479 (671)
Q Consensus       418 ~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~--~g~~V~L~V~R~~~  479 (671)
                      .|++|..|.+++||+++| |++||+|++|||..+.++  .++..++..  .+..+.|++.|++.
T Consensus        24 ~g~~V~~v~~~s~a~~~g-l~~GD~I~~Ing~~i~~~--~~~~~~l~~~~~~~~i~l~v~r~g~   84 (90)
T cd00987          24 KGVLVASVDPGSPAAKAG-LKPGDVILAVNGKPVKSV--ADLRRALAELKPGDKVTLTVLRGGK   84 (90)
T ss_pred             CEEEEEEECCCCHHHHcC-CCcCCEEEEECCEECCCH--HHHHHHHHhcCCCCEEEEEEEECCE
Confidence            589999999999999999 999999999999999754  345555553  37789999988764

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>KOG3542|consensus

Probab=97.88  E-value=2.2e-05  Score=89.05  Aligned_cols=87  Identities=23%  Similarity=0.395  Sum_probs=75.9

Q ss_pred             CCCeEEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHh
Q psy1156         385 QEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIIS  464 (671)
Q Consensus       385 ~~~~~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~  464 (671)
                      ...++.|.|.|.....+|-|.+.||.+.+    -||||..|.||+-|++.| |+.||+|++|||+..+..+...|+.+|+
T Consensus       533 KAK~RqviLtk~sre~pl~f~L~GGsEkG----fgifV~~V~pgskAa~~G-lKRgDqilEVNgQnfenis~~KA~eiLr  607 (1283)
T KOG3542|consen  533 KAKPRQVILTKASREDPLMFRLVGGSEKG----FGIFVAEVFPGSKAAREG-LKRGDQILEVNGQNFENISAKKAEEILR  607 (1283)
T ss_pred             cccceeEEEecccccCCceeEeccCcccc----ceeEEeeecCCchHHHhh-hhhhhhhhhccccchhhhhHHHHHHHhc
Confidence            45788999999555689999999998776    689999999999999999 9999999999999999999999999999


Q ss_pred             cCCCeEEEEEEeC
Q psy1156         465 SGPLNMDLLISRT  477 (671)
Q Consensus       465 ~~g~~V~L~V~R~  477 (671)
                      + ...++|+|..+
T Consensus       608 n-nthLtltvKtN  619 (1283)
T KOG3542|consen  608 N-NTHLTLTVKTN  619 (1283)
T ss_pred             C-CceEEEEEecc
Confidence            4 45667776543

>TIGR01713 typeII_sec_gspC general secretion pathway protein C

Probab=97.87  E-value=5.4e-05  Score=79.44  Aligned_cols=60  Identities=20%  Similarity=0.283  Sum_probs=52.8

Q ss_pred             cceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcC-CCcEEEEEEeCCC
Q psy1156         605 IGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIK-NGSISLHICRRLK  667 (671)
Q Consensus       605 ~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg-~~~VtL~V~Rr~~  667 (671)
                      .|+.|..|.++++|++.| |++||+|++|||.++.  +..++..++.+.. ...+.|+|.|+..
T Consensus       191 ~G~~v~~v~~~s~a~~aG-Lr~GDvIv~ING~~i~--~~~~~~~~l~~~~~~~~v~l~V~R~G~  251 (259)
T TIGR01713       191 EGYRLNPGKDPSLFYKSG-LQDGDIAVALNGLDLR--DPEQAFQALQMLREETNLTLTVERDGQ  251 (259)
T ss_pred             eEEEEEecCCCCHHHHcC-CCCCCEEEEECCEEcC--CHHHHHHHHHhcCCCCeEEEEEEECCE
Confidence            489999999999999999 9999999999999998  6788888887753 3579999999864

This model represents GspC, protein C of the main terminal branch of the general secretion pathway, also called type II secretion. This system transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.

>COG0793 Prc Periplasmic protease [Cell envelope biogenesis, outer membrane]

Probab=97.82  E-value=5.4e-05  Score=84.16  Aligned_cols=74  Identities=27%  Similarity=0.426  Sum_probs=64.2

Q ss_pred             CCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHh-cCCCeEEEEEEe
Q psy1156         398 FNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIIS-SGPLNMDLLISR  476 (671)
Q Consensus       398 ~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~-~~g~~V~L~V~R  476 (671)
                      .-+++|+.+.-...      .++.|.++.+++||+++| |++||.|+.|||.++.+++..+++..|+ ..+..|+|+|.|
T Consensus        98 ~~~GiG~~i~~~~~------~~~~V~s~~~~~PA~kag-i~~GD~I~~IdG~~~~~~~~~~av~~irG~~Gt~V~L~i~r  170 (406)
T COG0793          98 EFGGIGIELQMEDI------GGVKVVSPIDGSPAAKAG-IKPGDVIIKIDGKSVGGVSLDEAVKLIRGKPGTKVTLTILR  170 (406)
T ss_pred             cccceeEEEEEecC------CCcEEEecCCCChHHHcC-CCCCCEEEEECCEEccCCCHHHHHHHhCCCCCCeEEEEEEE
Confidence            34778888875432      468999999999999999 9999999999999999999999999998 557789999999


Q ss_pred             CC
Q psy1156         477 TS  478 (671)
Q Consensus       477 ~~  478 (671)
                      .+
T Consensus       171 ~~  172 (406)
T COG0793         171 AG  172 (406)
T ss_pred             cC
Confidence            73

>cd00986 PDZ_LON_protease PDZ domain of ATP-dependent LON serine proteases

Probab=97.79  E-value=6.3e-05  Score=63.98  Aligned_cols=59  Identities=25%  Similarity=0.363  Sum_probs=48.9

Q ss_pred             CcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHh--cCCCeEEEEEEeCCcc
Q psy1156         418 GGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIIS--SGPLNMDLLISRTSLK  480 (671)
Q Consensus       418 ~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~--~~g~~V~L~V~R~~~~  480 (671)
                      .|++|..|.+++||+. | |++||+|++|||..+..  .+++..++.  ..+..+.|++.|.+..
T Consensus         8 ~Gv~V~~V~~~s~A~~-g-L~~GD~I~~Ing~~v~~--~~~~~~~l~~~~~~~~v~l~v~r~g~~   68 (79)
T cd00986           8 HGVYVTSVVEGMPAAG-K-LKAGDHIIAVDGKPFKE--AEELIDYIQSKKEGDTVKLKVKREEKE   68 (79)
T ss_pred             cCEEEEEECCCCchhh-C-CCCCCEEEEECCEECCC--HHHHHHHHHhCCCCCEEEEEEEECCEE
Confidence            5899999999999986 8 99999999999999974  455666665  3467899999987653

Most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this bacterial subfamily of protease-associated PDZ domains a C-terminal beta-strand is thought to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>PRK10139 serine endoprotease; Provisional

Probab=97.72  E-value=8e-05  Score=84.01  Aligned_cols=60  Identities=30%  Similarity=0.416  Sum_probs=52.2

Q ss_pred             cceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHh-cCCCcEEEEEEeCCC
Q psy1156         605 IGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKT-IKNGSISLHICRRLK  667 (671)
Q Consensus       605 ~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~-sg~~~VtL~V~Rr~~  667 (671)
                      .|++|..|.++|||+++| |++||+|++|||++|.  ++.++...|.. .....+.|.|.|+.+
T Consensus       290 ~Gv~V~~V~~~SpA~~AG-L~~GDvIl~InG~~V~--s~~dl~~~l~~~~~g~~v~l~V~R~G~  350 (455)
T PRK10139        290 RGAFVSEVLPNSGSAKAG-VKAGDIITSLNGKPLN--SFAELRSRIATTEPGTKVKLGLLRNGK  350 (455)
T ss_pred             CceEEEEECCCChHHHCC-CCCCCEEEEECCEECC--CHHHHHHHHHhcCCCCEEEEEEEECCE
Confidence            589999999999999999 9999999999999998  77888888875 334679999988753

>TIGR02038 protease_degS periplasmic serine pepetdase DegS

Probab=97.72  E-value=7.7e-05  Score=81.37  Aligned_cols=60  Identities=25%  Similarity=0.302  Sum_probs=51.9

Q ss_pred             cceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhc-CCCcEEEEEEeCCC
Q psy1156         605 IGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTI-KNGSISLHICRRLK  667 (671)
Q Consensus       605 ~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~s-g~~~VtL~V~Rr~~  667 (671)
                      .|++|..|.++|||+++| |++||+|++|||+++.  +..++..+|... +.+.|.|+|.|+.+
T Consensus       278 ~Gv~V~~V~~~spA~~aG-L~~GDvI~~Ing~~V~--s~~dl~~~l~~~~~g~~v~l~v~R~g~  338 (351)
T TIGR02038       278 RGIVITGVDPNGPAARAG-ILVRDVILKYDGKDVI--GAEELMDRIAETRPGSKVMVTVLRQGK  338 (351)
T ss_pred             ccceEeecCCCChHHHCC-CCCCCEEEEECCEEcC--CHHHHHHHHHhcCCCCEEEEEEEECCE
Confidence            489999999999999999 9999999999999998  678888877652 34679999998754

This family consists of the periplasmic serine protease DegS (HhoB), a shorter paralog of protease DO (HtrA, DegP) and DegQ (HhoA). It is found in E. coli and several other Proteobacteria of the gamma subdivision. It contains a trypsin domain and a single copy of PDZ domain (in contrast to DegP with two copies). A critical role of this DegS is to sense stress in the periplasm and partially degrade an inhibitor of sigma(E).

>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family

Probab=97.67  E-value=9.3e-05  Score=82.56  Aligned_cols=60  Identities=28%  Similarity=0.449  Sum_probs=51.3

Q ss_pred             cceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhc-CCCcEEEEEEeCCC
Q psy1156         605 IGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTI-KNGSISLHICRRLK  667 (671)
Q Consensus       605 ~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~s-g~~~VtL~V~Rr~~  667 (671)
                      .|++|..|.++|||+++| |++||+|++|||+++.  ++.++..++... ....|.|+|.|+.+
T Consensus       257 ~Gv~V~~V~~~spA~~aG-L~~GDvI~~Vng~~i~--~~~~~~~~l~~~~~g~~v~l~v~R~g~  317 (428)
T TIGR02037       257 RGALVAQVLPGSPAEKAG-LKAGDVILSVNGKPIS--SFADLRRAIGTLKPGKKVTLGILRKGK  317 (428)
T ss_pred             CceEEEEccCCCChHHcC-CCCCCEEEEECCEEcC--CHHHHHHHHHhcCCCCEEEEEEEECCE
Confidence            589999999999999999 9999999999999998  667777777653 23679999988754

This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.

>PRK10898 serine endoprotease; Provisional

Probab=97.65  E-value=6.6e-05  Score=81.98  Aligned_cols=98  Identities=17%  Similarity=0.162  Sum_probs=66.0

Q ss_pred             cccchhccccCCCCCCCCeEEEEEEeCCC--CCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccC
Q psy1156         370 MMEISELSSENSEDSQEGQTMVRVNRRDF--NEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVN  447 (671)
Q Consensus       370 ~~~~v~~~~~~~~~~~~~~~~V~L~k~~~--~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVN  447 (671)
                      ..+.+..++...+...++|..|.+..-.+  ...+|+.      .    ..|++|..|.+++||+++| |++||+|++||
T Consensus       239 ~~~~~~~~l~~~G~~~~~~lGi~~~~~~~~~~~~~~~~------~----~~Gv~V~~V~~~spA~~aG-L~~GDvI~~In  307 (353)
T PRK10898        239 LATKIMDKLIRDGRVIRGYIGIGGREIAPLHAQGGGID------Q----LQGIVVNEVSPDGPAAKAG-IQVNDLIISVN  307 (353)
T ss_pred             HHHHHHHHHhhcCcccccccceEEEECCHHHHHhcCCC------C----CCeEEEEEECCCChHHHcC-CCCCCEEEEEC
Confidence            34444455555556666677666543211  1122211      1    1689999999999999999 99999999999


Q ss_pred             CeeccCCCHHHHHHHHh--cCCCeEEEEEEeCCcc
Q psy1156         448 GQRLRGLTMTQAKSIIS--SGPLNMDLLISRTSLK  480 (671)
Q Consensus       448 G~~V~~~s~~~av~~L~--~~g~~V~L~V~R~~~~  480 (671)
                      |+.+.++  .+....+.  ..+..+.|+|.|.++.
T Consensus       308 g~~V~s~--~~l~~~l~~~~~g~~v~l~v~R~g~~  340 (353)
T PRK10898        308 NKPAISA--LETMDQVAEIRPGSVIPVVVMRDDKQ  340 (353)
T ss_pred             CEEcCCH--HHHHHHHHhcCCCCEEEEEEEECCEE
Confidence            9999764  33333333  4677899999998753

>PRK11186 carboxy-terminal protease; Provisional

Probab=97.64  E-value=0.00012  Score=85.71  Aligned_cols=71  Identities=25%  Similarity=0.370  Sum_probs=57.7

Q ss_pred             CcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccC--C---eeccCCCHHHHHHHHh-cCCCeEEEE
Q psy1156         400 EELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVN--G---QRLRGLTMTQAKSIIS-SGPLNMDLL  473 (671)
Q Consensus       400 ~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVN--G---~~V~~~s~~~av~~L~-~~g~~V~L~  473 (671)
                      .++|+.+....       .+++|..|.+||||++++.|++||+|++||  |   .++.++...+++.+|+ ..|..|.|+
T Consensus       244 ~GIGa~l~~~~-------~~~~V~~vipGsPA~ka~gLk~GD~IlaVn~~g~~~~dv~g~~~~~vv~lirG~~Gt~V~Lt  316 (667)
T PRK11186        244 EGIGAVLQMDD-------DYTVINSLVAGGPAAKSKKLSVGDKIVGVGQDGKPIVDVIGWRLDDVVALIKGPKGSKVRLE  316 (667)
T ss_pred             eEEEEEEEEeC-------CeEEEEEccCCChHHHhCCCCCCCEEEEECCCCCcccccccCCHHHHHHHhcCCCCCEEEEE
Confidence            56777776422       468999999999999983399999999999  4   3566888999999998 457789999


Q ss_pred             EEeC
Q psy1156         474 ISRT  477 (671)
Q Consensus       474 V~R~  477 (671)
                      |.|.
T Consensus       317 V~r~  320 (667)
T PRK11186        317 ILPA  320 (667)
T ss_pred             EEeC
Confidence            9884

>PRK10898 serine endoprotease; Provisional

Probab=97.63  E-value=0.00014  Score=79.50  Aligned_cols=60  Identities=23%  Similarity=0.383  Sum_probs=50.7

Q ss_pred             cceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHh-cCCCcEEEEEEeCCC
Q psy1156         605 IGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKT-IKNGSISLHICRRLK  667 (671)
Q Consensus       605 ~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~-sg~~~VtL~V~Rr~~  667 (671)
                      .|++|..|.++|||+++| |++||+|++|||++|.  +..+....|.. .....+.|.|.|+.+
T Consensus       279 ~Gv~V~~V~~~spA~~aG-L~~GDvI~~Ing~~V~--s~~~l~~~l~~~~~g~~v~l~v~R~g~  339 (353)
T PRK10898        279 QGIVVNEVSPDGPAAKAG-IQVNDLIISVNNKPAI--SALETMDQVAEIRPGSVIPVVVMRDDK  339 (353)
T ss_pred             CeEEEEEECCCChHHHcC-CCCCCEEEEECCEEcC--CHHHHHHHHHhcCCCCEEEEEEEECCE
Confidence            599999999999999999 9999999999999998  56676666655 234679999988754

>TIGR02038 protease_degS periplasmic serine pepetdase DegS

Probab=97.60  E-value=6.7e-05  Score=81.83  Aligned_cols=98  Identities=15%  Similarity=0.176  Sum_probs=69.4

Q ss_pred             cccchhccccCCCCCCCCeEEEEEEeCC--CCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccC
Q psy1156         370 MMEISELSSENSEDSQEGQTMVRVNRRD--FNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVN  447 (671)
Q Consensus       370 ~~~~v~~~~~~~~~~~~~~~~V~L~k~~--~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVN  447 (671)
                      ..+.+..++...+...+.|..+.+..-.  ....||+.      ..    .|++|..|.+++||+++| |++||+|++||
T Consensus       238 ~~~~vl~~l~~~g~~~r~~lGv~~~~~~~~~~~~lgl~------~~----~Gv~V~~V~~~spA~~aG-L~~GDvI~~In  306 (351)
T TIGR02038       238 LAHKIMGKIIRDGRVIRGYIGVSGEDINSVVAQGLGLP------DL----RGIVITGVDPNGPAARAG-ILVRDVILKYD  306 (351)
T ss_pred             HHHHHHHHHhhcCcccceEeeeEEEECCHHHHHhcCCC------cc----ccceEeecCCCChHHHCC-CCCCCEEEEEC
Confidence            3444555555566666777777765421  11234441      11    689999999999999999 99999999999


Q ss_pred             CeeccCCCHHHHHHHHh--cCCCeEEEEEEeCCcc
Q psy1156         448 GQRLRGLTMTQAKSIIS--SGPLNMDLLISRTSLK  480 (671)
Q Consensus       448 G~~V~~~s~~~av~~L~--~~g~~V~L~V~R~~~~  480 (671)
                      |+.+..+  .+....+.  ..+..+.|+|.|++..
T Consensus       307 g~~V~s~--~dl~~~l~~~~~g~~v~l~v~R~g~~  339 (351)
T TIGR02038       307 GKDVIGA--EELMDRIAETRPGSKVMVTVLRQGKQ  339 (351)
T ss_pred             CEEcCCH--HHHHHHHHhcCCCCEEEEEEEECCEE
Confidence            9999754  44445554  4678899999998753

This family consists of the periplasmic serine protease DegS (HhoB), a shorter paralog of protease DO (HtrA, DegP) and DegQ (HhoA). It is found in E. coli and several other Proteobacteria of the gamma subdivision. It contains a trypsin domain and a single copy of PDZ domain (in contrast to DegP with two copies). A critical role of this DegS is to sense stress in the periplasm and partially degrade an inhibitor of sigma(E).

>TIGR01713 typeII_sec_gspC general secretion pathway protein C

Probab=97.55  E-value=0.00022  Score=74.87  Aligned_cols=60  Identities=27%  Similarity=0.346  Sum_probs=50.3

Q ss_pred             CcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHh--cCCCeEEEEEEeCCcc
Q psy1156         418 GGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIIS--SGPLNMDLLISRTSLK  480 (671)
Q Consensus       418 ~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~--~~g~~V~L~V~R~~~~  480 (671)
                      .|+.|..+.+++||+++| |+.||+|++|||+++.++  .++..++.  ..+..+.|+|.|+++.
T Consensus       191 ~G~~v~~v~~~s~a~~aG-Lr~GDvIv~ING~~i~~~--~~~~~~l~~~~~~~~v~l~V~R~G~~  252 (259)
T TIGR01713       191 EGYRLNPGKDPSLFYKSG-LQDGDIAVALNGLDLRDP--EQAFQALQMLREETNLTLTVERDGQR  252 (259)
T ss_pred             eEEEEEecCCCCHHHHcC-CCCCCEEEEECCEEcCCH--HHHHHHHHhcCCCCeEEEEEEECCEE
Confidence            689999999999999999 999999999999999864  44444444  2557899999998864

This model represents GspC, protein C of the main terminal branch of the general secretion pathway, also called type II secretion. This system transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.

>PRK10942 serine endoprotease; Provisional

Probab=97.54  E-value=0.00022  Score=80.86  Aligned_cols=60  Identities=28%  Similarity=0.437  Sum_probs=51.7

Q ss_pred             cceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhc-CCCcEEEEEEeCCC
Q psy1156         605 IGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTI-KNGSISLHICRRLK  667 (671)
Q Consensus       605 ~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~s-g~~~VtL~V~Rr~~  667 (671)
                      .|++|..|.++|+|+++| |++||+|++|||+.|.  +..+....|... +...+.|.|.|+.+
T Consensus       311 ~GvlV~~V~~~SpA~~AG-L~~GDvIl~InG~~V~--s~~dl~~~l~~~~~g~~v~l~v~R~G~  371 (473)
T PRK10942        311 RGAFVSQVLPNSSAAKAG-IKAGDVITSLNGKPIS--SFAALRAQVGTMPVGSKLTLGLLRDGK  371 (473)
T ss_pred             CceEEEEECCCChHHHcC-CCCCCEEEEECCEECC--CHHHHHHHHHhcCCCCEEEEEEEECCe
Confidence            589999999999999999 9999999999999998  678887777654 23578999988764

>TIGR02860 spore_IV_B stage IV sporulation protein B

Probab=97.37  E-value=0.00062  Score=75.35  Aligned_cols=69  Identities=22%  Similarity=0.348  Sum_probs=55.4

Q ss_pred             CCcccEEEecCCCCCCCCcceeEEEeC--------CCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcCCCcE
Q psy1156         587 KKGLGFTIVGGKDSPRGAIGIFIKSIL--------DNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKNGSI  658 (671)
Q Consensus       587 ~~~LGfsL~Gg~ds~~g~~GVfIssV~--------pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg~~~V  658 (671)
                      ...+|+.+.-        .||+|....        .++||+++| |++||+|++|||.+|.  +.+++.++|++.+...+
T Consensus        95 G~~iGI~l~t--------~GVlVvg~~~v~~~~g~~~SPAa~AG-Lq~GDiIvsING~~V~--s~~DL~~iL~~~~g~~V  163 (402)
T TIGR02860        95 GQSIGVKLNT--------KGVLVVGFSDIETEKGKIHSPGEEAG-IQIGDRILKINGEKIK--NMDDLANLINKAGGEKL  163 (402)
T ss_pred             CEEEEEEEec--------CEEEEEEEEcccccCCCCCCHHHHcC-CCCCCEEEEECCEECC--CHHHHHHHHHhCCCCeE
Confidence            3567777642        378876542        258999999 9999999999999998  78999999988766779


Q ss_pred             EEEEEeCC
Q psy1156         659 SLHICRRL  666 (671)
Q Consensus       659 tL~V~Rr~  666 (671)
                      .|.|.|+.
T Consensus       164 ~LtV~R~G  171 (402)
T TIGR02860       164 TLTIERGG  171 (402)
T ss_pred             EEEEEECC
Confidence            99998865

SpoIVB, the stage IV sporulation protein B of endospore-forming bacteria such as Bacillus subtilis, is a serine proteinase, expressed in the spore (rather than mother cell) compartment, that participates in a proteolytic activation cascade for Sigma-K. It appears to be universal among endospore-forming bacteria and occurs nowhere else.

>PRK10779 zinc metallopeptidase RseP; Provisional

Probab=97.36  E-value=0.00036  Score=78.51  Aligned_cols=58  Identities=16%  Similarity=0.125  Sum_probs=48.1

Q ss_pred             eeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhc-CCCcEEEEEEeCCC
Q psy1156         607 IFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTI-KNGSISLHICRRLK  667 (671)
Q Consensus       607 VfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~s-g~~~VtL~V~Rr~~  667 (671)
                      .+|..|.++|||+++| |++||+|++|||++|.  +.++....+... +..++.++|.|+.+
T Consensus       128 ~lV~~V~~~SpA~kAG-Lk~GDvI~~vnG~~V~--~~~~l~~~v~~~~~g~~v~v~v~R~gk  186 (449)
T PRK10779        128 PVVGEIAPNSIAAQAQ-IAPGTELKAVDGIETP--DWDAVRLALVSKIGDESTTITVAPFGS  186 (449)
T ss_pred             ccccccCCCCHHHHcC-CCCCCEEEEECCEEcC--CHHHHHHHHHhhccCCceEEEEEeCCc
Confidence            3789999999999999 9999999999999998  556666555443 33579999999875

>PF04495 GRASP55_65: GRASP55/65 PDZ-like domain ; InterPro: IPR007583 GRASP55 (Golgi reassembly stacking protein of 55 kDa) and GRASP65 (a 65 kDa) protein are highly homologous

Probab=97.31  E-value=0.0008  Score=64.37  Aligned_cols=77  Identities=19%  Similarity=0.220  Sum_probs=53.6

Q ss_pred             CCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCC-CCEEEEECCeecCCCCHHHHHHHHHhcCCCcEEEEEEeC
Q psy1156         587 KKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKE-GDEILAINGQVCHDLTHLEAISLFKTIKNGSISLHICRR  665 (671)
Q Consensus       587 ~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~-GDrILeVNG~sV~~lSheEAV~lLK~sg~~~VtL~V~Rr  665 (671)
                      .+.||++|.-.........+.-|.+|.|+|||+++| |++ .|.|+.+++..+.  +.++..++++..-...+.|.|..-
T Consensus        25 ~g~LG~sv~~~~~~~~~~~~~~Vl~V~p~SPA~~AG-L~p~~DyIig~~~~~l~--~~~~l~~~v~~~~~~~l~L~Vyns  101 (138)
T PF04495_consen   25 QGLLGISVRFESFEGAEEEGWHVLRVAPNSPAAKAG-LEPFFDYIIGIDGGLLD--DEDDLFELVEANENKPLQLYVYNS  101 (138)
T ss_dssp             SSSS-EEEEEEE-TTGCCCEEEEEEE-TTSHHHHTT---TTTEEEEEETTCE----STCHHHHHHHHTTTS-EEEEEEET
T ss_pred             CCCCcEEEEEecccccccceEEEeEecCCCHHHHCC-ccccccEEEEccceecC--CHHHHHHHHHHcCCCcEEEEEEEC
Confidence            367999986554432334578899999999999999 998 6999999998887  456777777776567899999754


Q ss_pred             C
Q psy1156         666 L  666 (671)
Q Consensus       666 ~  666 (671)
                      .
T Consensus       102 ~  102 (138)
T PF04495_consen  102 K  102 (138)
T ss_dssp             T
T ss_pred             C
Confidence            3

GRASP55 is a component of the Golgi stacking machinery. GRASP65, an N-ethylmaleimide-sensitive membrane protein required for the stacking of Golgi cisternae in a cell-free system [].; PDB: 3RLE_A 4EDJ_A.

>TIGR00054 RIP metalloprotease RseP

Probab=97.19  E-value=0.00075  Score=75.46  Aligned_cols=59  Identities=27%  Similarity=0.380  Sum_probs=50.8

Q ss_pred             cceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcCCCcEEEEEEeCCC
Q psy1156         605 IGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKNGSISLHICRRLK  667 (671)
Q Consensus       605 ~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg~~~VtL~V~Rr~~  667 (671)
                      .|.+|..|.++|||+++| |++||+|++|||..+.  +..++...+.... +.+.+.|.|+.+
T Consensus       128 ~g~~V~~V~~~SpA~~AG-L~~GDvI~~vng~~v~--~~~dl~~~ia~~~-~~v~~~I~r~g~  186 (420)
T TIGR00054       128 VGPVIELLDKNSIALEAG-IEPGDEILSVNGNKIP--GFKDVRQQIADIA-GEPMVEILAERE  186 (420)
T ss_pred             CCceeeccCCCCHHHHcC-CCCCCEEEEECCEEcC--CHHHHHHHHHhhc-ccceEEEEEecC
Confidence            367999999999999999 9999999999999998  6788888777765 788888888543

A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.

>KOG3938|consensus

Probab=97.17  E-value=0.00075  Score=70.06  Aligned_cols=87  Identities=17%  Similarity=0.303  Sum_probs=71.9

Q ss_pred             CCCCCeEEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHH
Q psy1156         383 DSQEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSI  462 (671)
Q Consensus       383 ~~~~~~~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~  462 (671)
                      .+.+..+.|.++|..  ..||++|....   .   +-+||.+|.+||.-++--.+++||.|-+|||++|.++.|-++..+
T Consensus       122 HvkGq~kEv~v~Kse--dalGlTITDNG---~---GyAFIKrIkegsvidri~~i~VGd~IEaiNge~ivG~RHYeVArm  193 (334)
T KOG3938|consen  122 HVKGQAKEVEVVKSE--DALGLTITDNG---A---GYAFIKRIKEGSVIDRIEAICVGDHIEAINGESIVGKRHYEVARM  193 (334)
T ss_pred             hhcCcceeEEEEecc--cccceEEeeCC---c---ceeeeEeecCCchhhhhhheeHHhHHHhhcCccccchhHHHHHHH
Confidence            445667889999964  89999999532   1   348999999999999988899999999999999999999999999


Q ss_pred             Hhc--CCCeEEEEEEeC
Q psy1156         463 ISS--GPLNMDLLISRT  477 (671)
Q Consensus       463 L~~--~g~~V~L~V~R~  477 (671)
                      |+.  .+...+|.+.-+
T Consensus       194 LKel~rge~ftlrLieP  210 (334)
T KOG3938|consen  194 LKELPRGETFTLRLIEP  210 (334)
T ss_pred             HHhcccCCeeEEEeecc
Confidence            994  456666666544

>PF04495 GRASP55_65: GRASP55/65 PDZ-like domain ; InterPro: IPR007583 GRASP55 (Golgi reassembly stacking protein of 55 kDa) and GRASP65 (a 65 kDa) protein are highly homologous

Probab=97.17  E-value=0.0027  Score=60.80  Aligned_cols=89  Identities=19%  Similarity=0.208  Sum_probs=57.4

Q ss_pred             CCeEEEEEEeCC---CCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCC-CCEEEccCCeeccCCCHHHHHH
Q psy1156         386 EGQTMVRVNRRD---FNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLEL-GDEIISVNGQRLRGLTMTQAKS  461 (671)
Q Consensus       386 ~~~~~V~L~k~~---~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~-GD~IlaVNG~~V~~~s~~~av~  461 (671)
                      ..+|.|.|+..+   ..+.||++|.-........ .++-|-+|.|+|||+.|| |.+ .|.|+.+++..+.+.  +....
T Consensus         9 ~~~R~v~i~ps~~w~~~g~LG~sv~~~~~~~~~~-~~~~Vl~V~p~SPA~~AG-L~p~~DyIig~~~~~l~~~--~~l~~   84 (138)
T PF04495_consen    9 QTTREVSIVPSKKWGGQGLLGISVRFESFEGAEE-EGWHVLRVAPNSPAAKAG-LEPFFDYIIGIDGGLLDDE--DDLFE   84 (138)
T ss_dssp             SSEEEEEE---SSSSSSSSS-EEEEEEE-TTGCC-CEEEEEEE-TTSHHHHTT---TTTEEEEEETTCE--ST--CHHHH
T ss_pred             CeEEEEEEccCcccCCCCCCcEEEEEeccccccc-ceEEEeEecCCCHHHHCC-ccccccEEEEccceecCCH--HHHHH
Confidence            456778876632   2588999988654332122 689999999999999999 887 699999999888753  44455


Q ss_pred             HHh-cCCCeEEEEEEeCC
Q psy1156         462 IIS-SGPLNMDLLISRTS  478 (671)
Q Consensus       462 ~L~-~~g~~V~L~V~R~~  478 (671)
                      .+. ..+..+.|.|....
T Consensus        85 ~v~~~~~~~l~L~Vyns~  102 (138)
T PF04495_consen   85 LVEANENKPLQLYVYNSK  102 (138)
T ss_dssp             HHHHTTTS-EEEEEEETT
T ss_pred             HHHHcCCCcEEEEEEECC
Confidence            555 56778999997643

GRASP55 is a component of the Golgi stacking machinery. GRASP65, an N-ethylmaleimide-sensitive membrane protein required for the stacking of Golgi cisternae in a cell-free system [].; PDB: 3RLE_A 4EDJ_A.

>KOG3834|consensus

Probab=96.94  E-value=0.009  Score=65.94  Aligned_cols=58  Identities=24%  Similarity=0.333  Sum_probs=47.0

Q ss_pred             CcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhcCCCeEEEEEEe
Q psy1156         418 GGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISR  476 (671)
Q Consensus       418 ~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~~g~~V~L~V~R  476 (671)
                      .|.-|-+|..+++|.++|..---|-|++|||..+. .+.+.....|+..-..|.|+|..
T Consensus        15 eg~hvlkVqedSpa~~aglepffdFIvSI~g~rL~-~dnd~Lk~llk~~sekVkltv~n   72 (462)
T KOG3834|consen   15 EGYHVLKVQEDSPAHKAGLEPFFDFIVSINGIRLN-KDNDTLKALLKANSEKVKLTVYN   72 (462)
T ss_pred             eeEEEEEeecCChHHhcCcchhhhhhheeCccccc-CchHHHHHHHHhcccceEEEEEe
Confidence            67888899999999999977777999999999884 45566777777544459999865

>PF14685 Tricorn_PDZ: Tricorn protease PDZ domain; PDB: 1N6F_D 1N6D_C 1N6E_C 1K32_A

Probab=96.89  E-value=0.0034  Score=55.70  Aligned_cols=60  Identities=30%  Similarity=0.402  Sum_probs=40.3

Q ss_pred             ceeEEEeCCC--------CHHhHhCC-CCCCCEEEEECCeecCCCCHHHHHHHHHhcCCCcEEEEEEeCCC
Q psy1156         606 GIFIKSILDN--------GQAAEDGR-LKEGDEILAINGQVCHDLTHLEAISLFKTIKNGSISLHICRRLK  667 (671)
Q Consensus       606 GVfIssV~pg--------SpAaraGr-Lr~GDrILeVNG~sV~~lSheEAV~lLK~sg~~~VtL~V~Rr~~  667 (671)
                      +..|.+|.++        ||.++.|- +++||.|++|||++|.  .-.....+|.......|.|+|.+...
T Consensus        13 ~y~I~~I~~gd~~~~~~~sPL~~pGv~v~~GD~I~aInG~~v~--~~~~~~~lL~~~agk~V~Ltv~~~~~   81 (88)
T PF14685_consen   13 GYRIARIYPGDPWNPNARSPLAQPGVDVREGDYILAINGQPVT--ADANPYRLLEGKAGKQVLLTVNRKPG   81 (88)
T ss_dssp             EEEEEEE-BS-TTSSS-B-GGGGGS----TT-EEEEETTEE-B--TTB-HHHHHHTTTTSEEEEEEE-STT
T ss_pred             EEEEEEEeCCCCCCccccCCccCCCCCCCCCCEEEEECCEECC--CCCCHHHHhcccCCCEEEEEEecCCC
Confidence            5778888886        77777772 5699999999999997  33556677776655789999988764

>COG0265 DegQ Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]

Probab=96.88  E-value=0.0017  Score=70.48  Aligned_cols=103  Identities=20%  Similarity=0.202  Sum_probs=69.7

Q ss_pred             ccccchhccccCCCCCCCCeEEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCC
Q psy1156         369 SMMEISELSSENSEDSQEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNG  448 (671)
Q Consensus       369 s~~~~v~~~~~~~~~~~~~~~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG  448 (671)
                      .....+..++...+...+++..+.+..-.....+|+..      .    .|++|..|.+++||+++| ++.||.|+++||
T Consensus       231 ~~~~~v~~~l~~~G~v~~~~lgv~~~~~~~~~~~g~~~------~----~G~~V~~v~~~spa~~ag-i~~Gdii~~vng  299 (347)
T COG0265         231 NLVAPVLDELISKGKVVRGYLGVIGEPLTADIALGLPV------A----AGAVVLGVLPGSPAAKAG-IKAGDIITAVNG  299 (347)
T ss_pred             HHHHHHHHHHHHcCCccccccceEEEEcccccccCCCC------C----CceEEEecCCCChHHHcC-CCCCCEEEEECC
Confidence            33444444445444666677776665422222366431      1    689999999999999999 999999999999


Q ss_pred             eeccCCCHHHHHHHHhcCCCeEEEEEEeCCcccc
Q psy1156         449 QRLRGLTMTQAKSIISSGPLNMDLLISRTSLKKS  482 (671)
Q Consensus       449 ~~V~~~s~~~av~~L~~~g~~V~L~V~R~~~~~~  482 (671)
                      ..+.+.......-.....+..+.+.+.|.++...
T Consensus       300 ~~v~~~~~l~~~v~~~~~g~~v~~~~~r~g~~~~  333 (347)
T COG0265         300 KPVASLSDLVAAVASNRPGDEVALKLLRGGKERE  333 (347)
T ss_pred             EEccCHHHHHHHHhccCCCCEEEEEEEECCEEEE
Confidence            9997653332222222467899999999866443

>KOG3938|consensus

Probab=96.83  E-value=0.0021  Score=66.87  Aligned_cols=82  Identities=27%  Similarity=0.352  Sum_probs=66.9

Q ss_pred             eeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcCCC
Q psy1156         577 HTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKNG  656 (671)
Q Consensus       577 ~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg~~  656 (671)
                      ..|.+.|..  ..||++|...-     ..=.||+.|.++|.-++--.+.+||-|-+|||++|.++.|-++..+||+.+++
T Consensus       128 kEv~v~Kse--dalGlTITDNG-----~GyAFIKrIkegsvidri~~i~VGd~IEaiNge~ivG~RHYeVArmLKel~rg  200 (334)
T KOG3938|consen  128 KEVEVVKSE--DALGLTITDNG-----AGYAFIKRIKEGSVIDRIEAICVGDHIEAINGESIVGKRHYEVARMLKELPRG  200 (334)
T ss_pred             eeEEEEecc--cccceEEeeCC-----cceeeeEeecCCchhhhhhheeHHhHHHhhcCccccchhHHHHHHHHHhcccC
Confidence            478888886  78999997421     11259999999999999667999999999999999999999999999998754


Q ss_pred             -cEEEEEEeC
Q psy1156         657 -SISLHICRR  665 (671)
Q Consensus       657 -~VtL~V~Rr  665 (671)
                       +.+|.+.-.
T Consensus       201 e~ftlrLieP  210 (334)
T KOG3938|consen  201 ETFTLRLIEP  210 (334)
T ss_pred             CeeEEEeecc
Confidence             466665443

>KOG1421|consensus

Probab=96.78  E-value=0.015  Score=67.23  Aligned_cols=94  Identities=27%  Similarity=0.340  Sum_probs=65.9

Q ss_pred             CCCCCCCeEEEEEEe--CCCCCcccEEEe-----eecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccC
Q psy1156         381 SEDSQEGQTMVRVNR--RDFNEELGIYIA-----KIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRG  453 (671)
Q Consensus       381 ~~~~~~~~~~V~L~k--~~~~~~LGfsI~-----gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~  453 (671)
                      ..+..+|...|++..  -+....||++-.     .... + +.-+-++|..|.++|||++.  |++||++++||+..+. 
T Consensus       261 n~PItRGtLqvefl~k~~de~rrlGL~sE~eqv~r~k~-P-~~tgmLvV~~vL~~gpa~k~--Le~GDillavN~t~l~-  335 (955)
T KOG1421|consen  261 NTPITRGTLQVEFLHKLFDECRRLGLSSEWEQVVRTKF-P-ERTGMLVVETVLPEGPAEKK--LEPGDILLAVNSTCLN-  335 (955)
T ss_pred             CCCcccceEEEEEehhhhHHHHhcCCcHHHHHHHHhcC-c-ccceeEEEEEeccCCchhhc--cCCCcEEEEEcceehH-
Confidence            556788888888865  223457786411     1111 1 11133788899999999863  9999999999987774 


Q ss_pred             CCHHHHHHHHh-cCCCeEEEEEEeCCcc
Q psy1156         454 LTMTQAKSIIS-SGPLNMDLLISRTSLK  480 (671)
Q Consensus       454 ~s~~~av~~L~-~~g~~V~L~V~R~~~~  480 (671)
                       +...+.++|. ..+..+.|+|+|.++.
T Consensus       336 -df~~l~~iLDegvgk~l~LtI~Rggqe  362 (955)
T KOG1421|consen  336 -DFEALEQILDEGVGKNLELTIQRGGQE  362 (955)
T ss_pred             -HHHHHHHHHhhccCceEEEEEEeCCEE
Confidence             3456666665 5788999999998874

>KOG0606|consensus

Probab=96.63  E-value=0.0029  Score=76.38  Aligned_cols=79  Identities=29%  Similarity=0.410  Sum_probs=62.8

Q ss_pred             eEEEeeCCCCCcccEEEec------CCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHH
Q psy1156         578 TIVFEKGPGKKGLGFTIVG------GKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFK  651 (671)
Q Consensus       578 ~V~L~K~~g~~~LGfsL~G------g~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK  651 (671)
                      .|.+.+..  ..|||++..      ..+  .-..-..|.+|.+++||..+| |++||.|.-|||++|.++.|.+++++|-
T Consensus       629 pI~i~~~~--~~yGft~~airVy~Gd~d--~ytvhh~v~sv~egsPA~~ag-ls~~DlIthvnge~v~gl~H~ev~~Lll  703 (1205)
T KOG0606|consen  629 PITIHFSG--KKYGFTLRAIRVYMGDKD--VYTVHHSVGSVEEGSPAFEAG-LSAGDLITHVNGEPVHGLVHTEVMELLL  703 (1205)
T ss_pred             ceeeeccc--cccCceeeeEEEecCCcc--cceeeeeeeeecCCCCccccC-CCccceeEeccCcccchhhHHHHHHHHH
Confidence            46676665  789988743      222  112246788999999999999 9999999999999999999999999998


Q ss_pred             hcCCCcEEEEE
Q psy1156         652 TIKNGSISLHI  662 (671)
Q Consensus       652 ~sg~~~VtL~V  662 (671)
                      +.+ ..|+|.+
T Consensus       704 ~~g-n~v~~~t  713 (1205)
T KOG0606|consen  704 KSG-NKVTLRT  713 (1205)
T ss_pred             hcC-CeeEEEe
Confidence            775 6677655

>KOG1421|consensus

Probab=96.39  E-value=0.013  Score=67.82  Aligned_cols=49  Identities=22%  Similarity=0.247  Sum_probs=44.5

Q ss_pred             cceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcCCCc
Q psy1156         605 IGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKNGS  657 (671)
Q Consensus       605 ~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg~~~  657 (671)
                      .||||...-.+|||.+ + |++-.-|.+|||+.+.  ++++.+.+|++.+.+.
T Consensus       862 ~gvyvt~rg~gspalq-~-l~aa~fitavng~~t~--~lddf~~~~~~ipdns  910 (955)
T KOG1421|consen  862 EGVYVTSRGYGSPALQ-M-LRAAHFITAVNGHDTN--TLDDFYHMLLEIPDNS  910 (955)
T ss_pred             CceEEeecccCChhHh-h-cchheeEEEecccccC--cHHHHHHHHhhCCCCc
Confidence            4899999999999999 6 9999999999999988  7899999999987443

>TIGR02860 spore_IV_B stage IV sporulation protein B

Probab=96.29  E-value=0.014  Score=64.97  Aligned_cols=71  Identities=21%  Similarity=0.482  Sum_probs=53.8

Q ss_pred             CCcccEEEeeecCCCCCCcCcEEEEEEc--------CCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhc-CCCe
Q psy1156         399 NEELGIYIAKIKNSSEGNIGGFVVAHIV--------SGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISS-GPLN  469 (671)
Q Consensus       399 ~~~LGfsI~gg~~~~~g~~~GI~Vs~V~--------pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~-~g~~  469 (671)
                      +.++|+.+.-         .||+|....        .++||+.+| |++||.|++|||..+..+  +++..++.. .+..
T Consensus        95 G~~iGI~l~t---------~GVlVvg~~~v~~~~g~~~SPAa~AG-Lq~GDiIvsING~~V~s~--~DL~~iL~~~~g~~  162 (402)
T TIGR02860        95 GQSIGVKLNT---------KGVLVVGFSDIETEKGKIHSPGEEAG-IQIGDRILKINGEKIKNM--DDLANLINKAGGEK  162 (402)
T ss_pred             CEEEEEEEec---------CEEEEEEEEcccccCCCCCCHHHHcC-CCCCCEEEEECCEECCCH--HHHHHHHHhCCCCe
Confidence            4677777752         677775542        368999999 999999999999999754  566666663 3678


Q ss_pred             EEEEEEeCCccc
Q psy1156         470 MDLLISRTSLKK  481 (671)
Q Consensus       470 V~L~V~R~~~~~  481 (671)
                      +.|+|.|++...
T Consensus       163 V~LtV~R~Ge~~  174 (402)
T TIGR02860       163 LTLTIERGGKII  174 (402)
T ss_pred             EEEEEEECCEEE
Confidence            999999987643

SpoIVB, the stage IV sporulation protein B of endospore-forming bacteria such as Bacillus subtilis, is a serine proteinase, expressed in the spore (rather than mother cell) compartment, that participates in a proteolytic activation cascade for Sigma-K. It appears to be universal among endospore-forming bacteria and occurs nowhere else.

>KOG4407|consensus

Probab=96.28  E-value=0.0053  Score=74.54  Aligned_cols=56  Identities=30%  Similarity=0.501  Sum_probs=50.4

Q ss_pred             eeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcCCCcEEEEEEe
Q psy1156         607 IFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKNGSISLHICR  664 (671)
Q Consensus       607 VfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg~~~VtL~V~R  664 (671)
                      |||++|+++++|.-+. |+-||++++||..++.++...++|-+++..+ ...+|+|.-
T Consensus       145 ~~~~eV~~n~~~~~a~-LQ~~~~V~~v~~q~~A~i~~s~~~S~~~qt~-~~~~~~~~P  200 (1973)
T KOG4407|consen  145 IFIKEVQANGPAHYAN-LQTGDRVLMVNNQPIAGIAYSTIVSMIKQTP-AVLTLHVVP  200 (1973)
T ss_pred             hhhhhhccCChhHHHh-hhccceeEEeecCcccchhhhhhhhhhccCC-CCCCceecc
Confidence            6999999999999998 9999999999999999999999999999875 566777653

>COG0265 DegQ Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]

Probab=96.23  E-value=0.013  Score=63.61  Aligned_cols=60  Identities=25%  Similarity=0.414  Sum_probs=51.1

Q ss_pred             cceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcC-CCcEEEEEEeCCC
Q psy1156         605 IGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIK-NGSISLHICRRLK  667 (671)
Q Consensus       605 ~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg-~~~VtL~V~Rr~~  667 (671)
                      .|++|..|.++|||+++| |+.||.|+++||..+.  +..+.+..+.... ...+.+.+.|+.+
T Consensus       270 ~G~~V~~v~~~spa~~ag-i~~Gdii~~vng~~v~--~~~~l~~~v~~~~~g~~v~~~~~r~g~  330 (347)
T COG0265         270 AGAVVLGVLPGSPAAKAG-IKAGDIITAVNGKPVA--SLSDLVAAVASNRPGDEVALKLLRGGK  330 (347)
T ss_pred             CceEEEecCCCChHHHcC-CCCCCEEEEECCEEcc--CHHHHHHHHhccCCCCEEEEEEEECCE
Confidence            579999999999999999 9999999999999998  6677777666543 4579999999854

>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase

Probab=96.22  E-value=0.0047  Score=69.07  Aligned_cols=40  Identities=28%  Similarity=0.408  Sum_probs=34.5

Q ss_pred             EEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHH
Q psy1156         609 IKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFK  651 (671)
Q Consensus       609 IssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK  651 (671)
                      |..|.|+|+|+++| |++||+|++|||+.|.  ++.++...+.
T Consensus         2 I~~V~pgSpAe~AG-Le~GD~IlsING~~V~--Dw~D~~~~l~   41 (433)
T TIGR03279         2 ISAVLPGSIAEELG-FEPGDALVSINGVAPR--DLIDYQFLCA   41 (433)
T ss_pred             cCCcCCCCHHHHcC-CCCCCEEEEECCEECC--CHHHHHHHhc
Confidence            67899999999999 9999999999999998  6677654443

Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.

>PF14685 Tricorn_PDZ: Tricorn protease PDZ domain; PDB: 1N6F_D 1N6D_C 1N6E_C 1K32_A

Probab=96.20  E-value=0.03  Score=49.72  Aligned_cols=70  Identities=23%  Similarity=0.344  Sum_probs=43.2

Q ss_pred             cccEEEeeecCCCCCCcCcEEEEEEcCC--------ChhhhcC-CCCCCCEEEccCCeeccCCCHHHHHHHHh-cCCCeE
Q psy1156         401 ELGIYIAKIKNSSEGNIGGFVVAHIVSG--------GLAEKEG-CLELGDEIISVNGQRLRGLTMTQAKSIIS-SGPLNM  470 (671)
Q Consensus       401 ~LGfsI~gg~~~~~g~~~GI~Vs~V~pG--------spA~raG-~L~~GD~IlaVNG~~V~~~s~~~av~~L~-~~g~~V  470 (671)
                      -||..+.-..       .+..|.+|.+|        ||....| .+++||.|++|||+.|..-.  ....+|. .++..|
T Consensus         2 ~LGAd~~~~~-------~~y~I~~I~~gd~~~~~~~sPL~~pGv~v~~GD~I~aInG~~v~~~~--~~~~lL~~~agk~V   72 (88)
T PF14685_consen    2 LLGADFSYDN-------GGYRIARIYPGDPWNPNARSPLAQPGVDVREGDYILAINGQPVTADA--NPYRLLEGKAGKQV   72 (88)
T ss_dssp             B-SEEEEEET-------TEEEEEEE-BS-TTSSS-B-GGGGGS----TT-EEEEETTEE-BTTB---HHHHHHTTTTSEE
T ss_pred             ccceEEEEcC-------CEEEEEEEeCCCCCCccccCCccCCCCCCCCCCEEEEECCEECCCCC--CHHHHhcccCCCEE
Confidence            4666555432       67889999987        5666666 35699999999999996532  2334444 678899


Q ss_pred             EEEEEeCCc
Q psy1156         471 DLLISRTSL  479 (671)
Q Consensus       471 ~L~V~R~~~  479 (671)
                      .|+|.+...
T Consensus        73 ~Ltv~~~~~   81 (88)
T PF14685_consen   73 LLTVNRKPG   81 (88)
T ss_dssp             EEEEE-STT
T ss_pred             EEEEecCCC
Confidence            999987543

>KOG3532|consensus

Probab=96.02  E-value=0.018  Score=66.53  Aligned_cols=71  Identities=20%  Similarity=0.357  Sum_probs=58.0

Q ss_pred             CCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcCCCcEEEEEEeCC
Q psy1156         587 KKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKNGSISLHICRRL  666 (671)
Q Consensus       587 ~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg~~~VtL~V~Rr~  666 (671)
                      ...+|+.......     ..|-|..|.++++|.++. |.+||++++|||++|+  +..++...++.. .+.|+.++.|..
T Consensus       385 s~~ig~vf~~~~~-----~~v~v~tv~~ns~a~k~~-~~~gdvlvai~~~pi~--s~~q~~~~~~s~-~~~~~~l~~~~~  455 (1051)
T KOG3532|consen  385 SSPIGLVFDKNTN-----RAVKVCTVEDNSLADKAA-FKPGDVLVAINNVPIR--SERQATRFLQST-TGDLTVLVERSL  455 (1051)
T ss_pred             cCceeEEEecCCc-----eEEEEEEecCCChhhHhc-CCCcceEEEecCccch--hHHHHHHHHHhc-ccceEEEEeecc
Confidence            3566776643322     357899999999999998 9999999999999999  889999999987 478887777754

>KOG1738|consensus

Probab=96.00  E-value=0.0077  Score=69.14  Aligned_cols=75  Identities=24%  Similarity=0.332  Sum_probs=63.3

Q ss_pred             CCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcCCCcEEEEEEeCC
Q psy1156         587 KKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKNGSISLHICRRL  666 (671)
Q Consensus       587 ~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg~~~VtL~V~Rr~  666 (671)
                      ..++|+.|....+.     .++|..+.+++||+..+.|..||+|+.||+..|.++.+.-+|..|+.... -|.|+|..+.
T Consensus       212 ~eglg~~I~Ssydg-----~h~~s~~~e~Spad~~~kI~dgdEv~qiN~qtvVgwqlk~vV~sL~~~~s-gi~l~lkKrp  285 (638)
T KOG1738|consen  212 SEGLGLYIDSSYDG-----PHVTSKIFEQSPADYRQKILDGDEVLQINEQTVVGWQLKVVVSSLRETPA-GIELTLKKRP  285 (638)
T ss_pred             ccCCceEEeeecCC-----ceeccccccCChHHHhhcccCccceeeecccccccchhHhHHhhcccCcc-cceeeeeccC
Confidence            47899999877663     58999999999999999999999999999999999999999999998863 4555554444


Q ss_pred             C
Q psy1156         667 K  667 (671)
Q Consensus       667 ~  667 (671)
                      .
T Consensus       286 ~  286 (638)
T KOG1738|consen  286 V  286 (638)
T ss_pred             C
Confidence            3

>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase

Probab=95.99  E-value=0.0065  Score=67.95  Aligned_cols=53  Identities=25%  Similarity=0.456  Sum_probs=41.6

Q ss_pred             EEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhcCCCeEEEEEE-eCCc
Q psy1156         422 VAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLIS-RTSL  479 (671)
Q Consensus       422 Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~~g~~V~L~V~-R~~~  479 (671)
                      |..|.|||+|+.+| |++||+|++|||+.+.++  .+....+.  +..+.|+|. |++.
T Consensus         2 I~~V~pgSpAe~AG-Le~GD~IlsING~~V~Dw--~D~~~~l~--~e~l~L~V~~rdGe   55 (433)
T TIGR03279         2 ISAVLPGSIAEELG-FEPGDALVSINGVAPRDL--IDYQFLCA--DEELELEVLDANGE   55 (433)
T ss_pred             cCCcCCCCHHHHcC-CCCCCEEEEECCEECCCH--HHHHHHhc--CCcEEEEEEcCCCe
Confidence            67799999999999 999999999999999754  44544443  356788886 5553

Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.

>KOG3129|consensus

Probab=95.75  E-value=0.025  Score=57.41  Aligned_cols=59  Identities=20%  Similarity=0.307  Sum_probs=43.5

Q ss_pred             eeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCC-CHHHHHHHHHhcCCCcEEEEEEeCC
Q psy1156         607 IFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDL-THLEAISLFKTIKNGSISLHICRRL  666 (671)
Q Consensus       607 VfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~l-SheEAV~lLK~sg~~~VtL~V~Rr~  666 (671)
                      ++|.+|.|+|||+++| |+.||.|+.+..+.-.+. .+..+....+..-...+.++|.|..
T Consensus       141 a~V~sV~~~SPA~~aG-l~~gD~il~fGnV~sgn~~~lq~i~~~v~~~e~~~v~v~v~R~g  200 (231)
T KOG3129|consen  141 AVVDSVVPGSPADEAG-LCVGDEILKFGNVHSGNFLPLQNIAAVVQSNEDQIVSVTVIREG  200 (231)
T ss_pred             EEEeecCCCChhhhhC-cccCceEEEecccccccchhHHHHHHHHHhccCcceeEEEecCC
Confidence            5899999999999999 999999999877655332 3445544445443356888887765

>COG3975 Predicted protease with the C-terminal PDZ domain [General function prediction only]

Probab=95.66  E-value=0.02  Score=64.84  Aligned_cols=69  Identities=22%  Similarity=0.235  Sum_probs=50.9

Q ss_pred             CCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhcCCCeEEEEEE
Q psy1156         396 RDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLIS  475 (671)
Q Consensus       396 ~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~~g~~V~L~V~  475 (671)
                      ..+...||+.+....       ++..|..|.+||||.++| |.+||.|++|||..-.-       .-. +++..+.+.+.
T Consensus       447 ~~~~~~LGl~v~~~~-------g~~~i~~V~~~gPA~~AG-l~~Gd~ivai~G~s~~l-------~~~-~~~d~i~v~~~  510 (558)
T COG3975         447 PREAYYLGLKVKSEG-------GHEKITFVFPGGPAYKAG-LSPGDKIVAINGISDQL-------DRY-KVNDKIQVHVF  510 (558)
T ss_pred             CCCCcccceEecccC-------CeeEEEecCCCChhHhcc-CCCccEEEEEcCccccc-------ccc-ccccceEEEEc
Confidence            333468888876432       568999999999999999 99999999999981110       011 36677888887


Q ss_pred             eCCcc
Q psy1156         476 RTSLK  480 (671)
Q Consensus       476 R~~~~  480 (671)
                      +.+..
T Consensus       511 ~~~~L  515 (558)
T COG3975         511 REGRL  515 (558)
T ss_pred             cCCce
Confidence            76654

>COG3975 Predicted protease with the C-terminal PDZ domain [General function prediction only]

Probab=95.56  E-value=0.025  Score=64.08  Aligned_cols=42  Identities=33%  Similarity=0.447  Sum_probs=36.5

Q ss_pred             CcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCe
Q psy1156         588 KGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQ  636 (671)
Q Consensus       588 ~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~  636 (671)
                      ..||+.+....+      +..|..|.++|||..+| |.+||.|++|||.
T Consensus       451 ~~LGl~v~~~~g------~~~i~~V~~~gPA~~AG-l~~Gd~ivai~G~  492 (558)
T COG3975         451 YYLGLKVKSEGG------HEKITFVFPGGPAYKAG-LSPGDKIVAINGI  492 (558)
T ss_pred             cccceEecccCC------eeEEEecCCCChhHhcc-CCCccEEEEEcCc
Confidence            478888754332      57999999999999999 9999999999999

>KOG1738|consensus

Probab=95.52  E-value=0.012  Score=67.75  Aligned_cols=79  Identities=24%  Similarity=0.384  Sum_probs=65.4

Q ss_pred             EEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhcCCCeE
Q psy1156         391 VRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLNM  470 (671)
Q Consensus       391 V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~~g~~V  470 (671)
                      |++-...+.++||+.|...-+      ...+|+.+.+++||+..+.|+.||+|+.||++.|.++.+.-++..|.....-|
T Consensus       204 vqls~~kp~eglg~~I~Ssyd------g~h~~s~~~e~Spad~~~kI~dgdEv~qiN~qtvVgwqlk~vV~sL~~~~sgi  277 (638)
T KOG1738|consen  204 VQLSTLSPSEGLGLYIDSSYD------GPHVTSKIFEQSPADYRQKILDGDEVLQINEQTVVGWQLKVVVSSLRETPAGI  277 (638)
T ss_pred             HHhccCCcccCCceEEeeecC------CceeccccccCChHHHhhcccCccceeeecccccccchhHhHHhhcccCcccc
Confidence            444434566899999987653      45899999999999999999999999999999999999999999999665556


Q ss_pred             EEEEE
Q psy1156         471 DLLIS  475 (671)
Q Consensus       471 ~L~V~  475 (671)
                      .++|.
T Consensus       278 ~l~lk  282 (638)
T KOG1738|consen  278 ELTLK  282 (638)
T ss_pred             eeeee
Confidence            66654

>KOG3129|consensus

Probab=95.43  E-value=0.032  Score=56.59  Aligned_cols=63  Identities=21%  Similarity=0.311  Sum_probs=46.1

Q ss_pred             cEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCC-HHHHHHHHh-cCCCeEEEEEEeCCcccc
Q psy1156         419 GFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLT-MTQAKSIIS-SGPLNMDLLISRTSLKKS  482 (671)
Q Consensus       419 GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s-~~~av~~L~-~~g~~V~L~V~R~~~~~~  482 (671)
                      -++|..|.|+|||+.+| |++||.|+.+..+.-.+.. ........+ ..+..+.++|.|.+....
T Consensus       140 Fa~V~sV~~~SPA~~aG-l~~gD~il~fGnV~sgn~~~lq~i~~~v~~~e~~~v~v~v~R~g~~v~  204 (231)
T KOG3129|consen  140 FAVVDSVVPGSPADEAG-LCVGDEILKFGNVHSGNFLPLQNIAAVVQSNEDQIVSVTVIREGQKVV  204 (231)
T ss_pred             eEEEeecCCCChhhhhC-cccCceEEEecccccccchhHHHHHHHHHhccCcceeEEEecCCCEEE
Confidence            48999999999999999 9999999998775443332 333333333 456788999999877543

>PRK09681 putative type II secretion protein GspC; Provisional

Probab=95.21  E-value=0.048  Score=57.93  Aligned_cols=46  Identities=30%  Similarity=0.434  Sum_probs=36.5

Q ss_pred             hHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcCC-CcEEEEEEeCCC
Q psy1156         619 AEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKN-GSISLHICRRLK  667 (671)
Q Consensus       619 araGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg~-~~VtL~V~Rr~~  667 (671)
                      .+.| |++||++++|||.++.  +.+++.+++++... ..+.|+|.|+..
T Consensus       221 ~~~G-Lq~GDva~sING~dL~--D~~qa~~l~~~L~~~tei~ltVeRdGq  267 (276)
T PRK09681        221 DASG-FKEGDIAIALNQQDFT--DPRAMIALMRQLPSMDSIQLTVLRKGA  267 (276)
T ss_pred             HHcC-CCCCCEEEEeCCeeCC--CHHHHHHHHHHhccCCeEEEEEEECCE
Confidence            4578 9999999999999998  55766666665532 469999999864

>KOG0606|consensus

Probab=95.18  E-value=0.041  Score=66.90  Aligned_cols=81  Identities=22%  Similarity=0.340  Sum_probs=62.1

Q ss_pred             EEEEeCCCCCcccEEEeeecCCCCCC----cCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhcC
Q psy1156         391 VRVNRRDFNEELGIYIAKIKNSSEGN----IGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSG  466 (671)
Q Consensus       391 V~L~k~~~~~~LGfsI~gg~~~~~g~----~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~~  466 (671)
                      +.|.+.  +..|||++..-.-.- |+    ..--.|..|.+|+||..+| |+.||.|+.|||+.|.+..|.+++.+|-+.
T Consensus       630 I~i~~~--~~~yGft~~airVy~-Gd~d~ytvhh~v~sv~egsPA~~ag-ls~~DlIthvnge~v~gl~H~ev~~Lll~~  705 (1205)
T KOG0606|consen  630 ITIHFS--GKKYGFTLRAIRVYM-GDKDVYTVHHSVGSVEEGSPAFEAG-LSAGDLITHVNGEPVHGLVHTEVMELLLKS  705 (1205)
T ss_pred             eeeecc--ccccCceeeeEEEec-CCcccceeeeeeeeecCCCCccccC-CCccceeEeccCcccchhhHHHHHHHHHhc
Confidence            555553  488998765322110 11    0124788999999999999 999999999999999999999999999977


Q ss_pred             CCeEEEEEE
Q psy1156         467 PLNMDLLIS  475 (671)
Q Consensus       467 g~~V~L~V~  475 (671)
                      +..|.+.+.
T Consensus       706 gn~v~~~tt  714 (1205)
T KOG0606|consen  706 GNKVTLRTT  714 (1205)
T ss_pred             CCeeEEEee
Confidence            877777663

>COG3480 SdrC Predicted secreted protein containing a PDZ domain [Signal transduction mechanisms]

Probab=94.71  E-value=0.085  Score=56.67  Aligned_cols=56  Identities=27%  Similarity=0.552  Sum_probs=49.6

Q ss_pred             ceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcC-CCcEEEEEEeC
Q psy1156         606 GIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIK-NGSISLHICRR  665 (671)
Q Consensus       606 GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg-~~~VtL~V~Rr  665 (671)
                      |||+..|..+++|.  |.|+.||.|++|||+++.  +.++.+..+++.+ .+.|++.+.|.
T Consensus       131 gvyv~~v~~~~~~~--gkl~~gD~i~avdg~~f~--s~~e~i~~v~~~k~Gd~VtI~~~r~  187 (342)
T COG3480         131 GVYVLSVIDNSPFK--GKLEAGDTIIAVDGEPFT--SSDELIDYVSSKKPGDEVTIDYERH  187 (342)
T ss_pred             eEEEEEccCCcchh--ceeccCCeEEeeCCeecC--CHHHHHHHHhccCCCCeEEEEEEec
Confidence            89999999999998  779999999999999998  7899999988753 46799999874

>COG3031 PulC Type II secretory pathway, component PulC [Intracellular trafficking and secretion]

Probab=93.95  E-value=0.18  Score=52.31  Aligned_cols=71  Identities=25%  Similarity=0.315  Sum_probs=53.2

Q ss_pred             EEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcC-CCc
Q psy1156         579 IVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIK-NGS  657 (671)
Q Consensus       579 V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg-~~~  657 (671)
                      .-+.++.  .-+|+.+..+++               ++.-...| |+.||..++||+.+++  +-+++..+|+... ...
T Consensus       198 tpv~r~e--ki~Gyr~~pgkd---------------~slF~~sg-lq~GDIavaiNnldlt--dp~~m~~llq~l~~m~s  257 (275)
T COG3031         198 TPVIRNE--KIEGYRFEPGKD---------------GSLFYKSG-LQRGDIAVAINNLDLT--DPEDMFRLLQMLRNMPS  257 (275)
T ss_pred             eeEeeCC--ceEEEEecCCCC---------------cchhhhhc-CCCcceEEEecCcccC--CHHHHHHHHHhhhcCcc
Confidence            3343443  678888877755               34455668 9999999999999998  6788888887764 346


Q ss_pred             EEEEEEeCCCCC
Q psy1156         658 ISLHICRRLKSK  669 (671)
Q Consensus       658 VtL~V~Rr~~~~  669 (671)
                      +.|+|.|+.+..
T Consensus       258 ~qlTv~R~G~rh  269 (275)
T COG3031         258 LQLTVIRRGKRH  269 (275)
T ss_pred             eEEEEEecCccc
Confidence            999999998754

>KOG3532|consensus

Probab=93.82  E-value=0.14  Score=59.36  Aligned_cols=69  Identities=23%  Similarity=0.422  Sum_probs=54.5

Q ss_pred             CCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhcCCCeEEEEEEe
Q psy1156         399 NEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISR  476 (671)
Q Consensus       399 ~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~~g~~V~L~V~R  476 (671)
                      ..++|+.......      ..|-|..|.+++||+++. +.+||++++|||.+|.  +..++...++...+.+...+.|
T Consensus       385 s~~ig~vf~~~~~------~~v~v~tv~~ns~a~k~~-~~~gdvlvai~~~pi~--s~~q~~~~~~s~~~~~~~l~~~  453 (1051)
T KOG3532|consen  385 SSPIGLVFDKNTN------RAVKVCTVEDNSLADKAA-FKPGDVLVAINNVPIR--SERQATRFLQSTTGDLTVLVER  453 (1051)
T ss_pred             cCceeEEEecCCc------eEEEEEEecCCChhhHhc-CCCcceEEEecCccch--hHHHHHHHHHhcccceEEEEee
Confidence            4566766553321      678999999999999999 9999999999999996  4567888888766777666655

>PRK09681 putative type II secretion protein GspC; Provisional

Probab=93.79  E-value=0.12  Score=54.98  Aligned_cols=50  Identities=18%  Similarity=0.294  Sum_probs=38.2

Q ss_pred             hhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHh--cCCCeEEEEEEeCCcccc
Q psy1156         430 LAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIIS--SGPLNMDLLISRTSLKKS  482 (671)
Q Consensus       430 pA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~--~~g~~V~L~V~R~~~~~~  482 (671)
                      .-.++| |++||.+++|||.++.+.  +++.+++.  .....++|+|.|+++...
T Consensus       219 lF~~~G-Lq~GDva~sING~dL~D~--~qa~~l~~~L~~~tei~ltVeRdGq~~~  270 (276)
T PRK09681        219 LFDASG-FKEGDIAIALNQQDFTDP--RAMIALMRQLPSMDSIQLTVLRKGARHD  270 (276)
T ss_pred             HHHHcC-CCCCCEEEEeCCeeCCCH--HHHHHHHHHhccCCeEEEEEEECCEEEE
Confidence            456689 999999999999999854  44444444  246789999999998543

>KOG1320|consensus

Probab=93.52  E-value=0.15  Score=57.75  Aligned_cols=60  Identities=17%  Similarity=0.304  Sum_probs=48.7

Q ss_pred             cceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcC-CCcEEEEEEeCCC
Q psy1156         605 IGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIK-NGSISLHICRRLK  667 (671)
Q Consensus       605 ~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg-~~~VtL~V~Rr~~  667 (671)
                      .+++|..|.|++++...| +.+||+|++|||++|.+  ..++..++..+- .+.|.++..|..+
T Consensus       398 q~v~is~Vlp~~~~~~~~-~~~g~~V~~vng~~V~n--~~~l~~~i~~~~~~~~v~vl~~~~~e  458 (473)
T KOG1320|consen  398 QLVLVSQVLPGSINGGYG-LKPGDQVVKVNGKPVKN--LKHLYELIEECSTEDKVAVLDRRSAE  458 (473)
T ss_pred             eEEEEEEeccCCCccccc-ccCCCEEEEECCEEeec--hHHHHHHHHhcCcCceEEEEEecCcc
Confidence            479999999999999988 99999999999999994  577888888764 2356666655544

>PF12812 PDZ_1: PDZ-like domain

Probab=92.24  E-value=0.38  Score=41.73  Aligned_cols=46  Identities=22%  Similarity=0.249  Sum_probs=39.3

Q ss_pred             ceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcC
Q psy1156         606 GIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIK  654 (671)
Q Consensus       606 GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg  654 (671)
                      |+++.+...++++...| +..|-.|..|||+++.  +.++.++.+++.+
T Consensus        31 ~gv~v~~~~g~~~~~~~-i~~g~iI~~Vn~kpt~--~Ld~f~~vvk~ip   76 (78)
T PF12812_consen   31 GGVYVAVSGGSLAFAGG-ISKGFIITSVNGKPTP--DLDDFIKVVKKIP   76 (78)
T ss_pred             CEEEEEecCCChhhhCC-CCCCeEEEeECCcCCc--CHHHHHHHHHhCC
Confidence            45556778888888766 9999999999999999  7899999999876

>COG3480 SdrC Predicted secreted protein containing a PDZ domain [Signal transduction mechanisms]

Probab=92.10  E-value=0.28  Score=52.86  Aligned_cols=58  Identities=22%  Similarity=0.324  Sum_probs=48.2

Q ss_pred             CcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHh--cCCCeEEEEEEeCCc
Q psy1156         418 GGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIIS--SGPLNMDLLISRTSL  479 (671)
Q Consensus       418 ~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~--~~g~~V~L~V~R~~~  479 (671)
                      .||||..|..++|+  .|.|+.||.|++|||+++..  .++....++  ..++.|++.+.|...
T Consensus       130 ~gvyv~~v~~~~~~--~gkl~~gD~i~avdg~~f~s--~~e~i~~v~~~k~Gd~VtI~~~r~~~  189 (342)
T COG3480         130 AGVYVLSVIDNSPF--KGKLEAGDTIIAVDGEPFTS--SDELIDYVSSKKPGDEVTIDYERHNE  189 (342)
T ss_pred             eeEEEEEccCCcch--hceeccCCeEEeeCCeecCC--HHHHHHHHhccCCCCeEEEEEEeccC
Confidence            58999999999998  47899999999999999974  456666665  678999999997443

>KOG4371|consensus

Probab=90.18  E-value=0.33  Score=58.87  Aligned_cols=84  Identities=17%  Similarity=0.290  Sum_probs=65.0

Q ss_pred             eeeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcCC
Q psy1156         576 FHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKN  655 (671)
Q Consensus       576 ~~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg~  655 (671)
                      ...|.+-+.+  +.||..++....      -+.|+...-.+.-.+-. |+.||.++.|||+.+.+.-|.+|+.+++..+ 
T Consensus      1148 ~i~~~~~r~~--~~l~~~~a~~~~------~~~~~~~~~~~~~~~pd-~~~g~~l~~~n~i~~~~~~~~~~~~~~~~~~- 1217 (1332)
T KOG4371|consen 1148 VIDVELDRNE--GSLGVQIASLSG------RVCIKQLTSEPAISHPD-IRVGDVLLYVNGIAVEGKVHQEVVAMLRGGG- 1217 (1332)
T ss_pred             cccccCCCCC--CCCCceeccCcc------ceehhhcccCCCCCCCC-cchhhhhhhccceeeechhhHHHHHHHhccC-
Confidence            3345555554  789988875533      25677766655555555 9999999999999999999999999999865 


Q ss_pred             CcEEEEEEeCCCCC
Q psy1156         656 GSISLHICRRLKSK  669 (671)
Q Consensus       656 ~~VtL~V~Rr~~~~  669 (671)
                      +.|.|-|+|..+.+
T Consensus      1218 ~~~~~~~~r~~~~~ 1231 (1332)
T KOG4371|consen 1218 DRVVLGVQRPPPAY 1231 (1332)
T ss_pred             ceEEEEeecCCccc
Confidence            88999999988654

>KOG1320|consensus

Probab=89.84  E-value=0.59  Score=53.14  Aligned_cols=59  Identities=22%  Similarity=0.393  Sum_probs=45.5

Q ss_pred             CcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhcC--CCeEEEEEEeCCc
Q psy1156         418 GGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSG--PLNMDLLISRTSL  479 (671)
Q Consensus       418 ~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~~--g~~V~L~V~R~~~  479 (671)
                      .+++|+.|.+++++...+ +.+||+|+.|||+.|.+..|  +..++..+  ++.|.++..+..+
T Consensus       398 q~v~is~Vlp~~~~~~~~-~~~g~~V~~vng~~V~n~~~--l~~~i~~~~~~~~v~vl~~~~~e  458 (473)
T KOG1320|consen  398 QLVLVSQVLPGSINGGYG-LKPGDQVVKVNGKPVKNLKH--LYELIEECSTEDKVAVLDRRSAE  458 (473)
T ss_pred             eEEEEEEeccCCCccccc-ccCCCEEEEECCEEeechHH--HHHHHHhcCcCceEEEEEecCcc
Confidence            579999999999999988 99999999999999987644  44555433  3466666655433

>COG3031 PulC Type II secretory pathway, component PulC [Intracellular trafficking and secretion]

Probab=89.37  E-value=1.1  Score=46.84  Aligned_cols=73  Identities=21%  Similarity=0.261  Sum_probs=50.4

Q ss_pred             eEEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHh--c
Q psy1156         388 QTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIIS--S  465 (671)
Q Consensus       388 ~~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~--~  465 (671)
                      ++.+.+.+.  ++-+|+.+..|.                +++.-+..| |+.||+.+++|+.++.+  .+.+..+|+  .
T Consensus       195 Irltpv~r~--eki~Gyr~~pgk----------------d~slF~~sg-lq~GDIavaiNnldltd--p~~m~~llq~l~  253 (275)
T COG3031         195 IRLTPVIRN--EKIEGYRFEPGK----------------DGSLFYKSG-LQRGDIAVAINNLDLTD--PEDMFRLLQMLR  253 (275)
T ss_pred             eEeeeEeeC--CceEEEEecCCC----------------Ccchhhhhc-CCCcceEEEecCcccCC--HHHHHHHHHhhh
Confidence            344444343  366777666443                355667789 99999999999999874  344555554  3


Q ss_pred             CCCeEEEEEEeCCccc
Q psy1156         466 GPLNMDLLISRTSLKK  481 (671)
Q Consensus       466 ~g~~V~L~V~R~~~~~  481 (671)
                      ....+.|+|.|.|...
T Consensus       254 ~m~s~qlTv~R~G~rh  269 (275)
T COG3031         254 NMPSLQLTVIRRGKRH  269 (275)
T ss_pred             cCcceEEEEEecCccc
Confidence            5678999999988754

>COG0750 Predicted membrane-associated Zn-dependent proteases 1 [Cell envelope biogenesis, outer membrane]

Probab=85.35  E-value=2.5  Score=46.05  Aligned_cols=54  Identities=20%  Similarity=0.384  Sum_probs=42.8

Q ss_pred             eEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcCCCc---EEEEEEe
Q psy1156         608 FIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKNGS---ISLHICR  664 (671)
Q Consensus       608 fIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg~~~---VtL~V~R  664 (671)
                      ++..|..+++|+.+| |++||+|+++|+..+.  +..++...+.......   +.+.+.|
T Consensus       132 ~~~~v~~~s~a~~a~-l~~Gd~iv~~~~~~i~--~~~~~~~~~~~~~~~~~~~~~i~~~~  188 (375)
T COG0750         132 VVGEVAPKSAAALAG-LRPGDRIVAVDGEKVA--SWDDVRRLLVAAAGDVFNLLTILVIR  188 (375)
T ss_pred             eeeecCCCCHHHHcC-CCCCCEEEeECCEEcc--CHHHHHHHHHhccCCcccceEEEEEe
Confidence            455799999999999 9999999999999998  5677666655543233   6777777

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	671
2fne_A	117	The Crystal Structure Of The 13th Pdz Domain Of Mpd		2e-16
2o2t_A	117	The Crystal Structure Of The 1st Pdz Domain Of Mpdz		2e-12
2jik_A	101	Crystal Structure Of Pdz Domain Of Synaptojanin-2 B		1e-11
2eno_A	120	Solution Structure Of The Pdz Domain From Human Syn		2e-11
2jin_A	102	Crystal Structure Of Pdz Domain Of Synaptojanin-2 B		1e-10
2xkx_A	721	Single Particle Analysis Of Psd-95 In Negative Stai		7e-10
2xkx_A	721	Single Particle Analysis Of Psd-95 In Negative Stai		5e-09
2dm8_A	116	Solution Structure Of The Eighth Pdz Domain Of Huma		1e-09
3zrt_A	199	Crystal Structure Of Human Psd-95 Pdz1-2 Length = 1		3e-09
2wl7_A	102	Crystal Structure Of The Psd93 Pdz1 Domain Length =		6e-09
2ka9_A	189	Solution Structure Of Psd-95 Pdz12 Complexed With C		9e-09
3gsl_A	196	Crystal Structure Of Psd-95 Tandem Pdz Domains 1 An		1e-08
1iu0_A	91	The First Pdz Domain Of Psd-95 Length = 91		2e-08
1rgr_A	99	Cyclic Peptides Targeting Pdz Domains Of Psd-95: St		2e-08
1kef_A	93	Pdz1 Of Sap90 Length = 93		2e-08
2opg_A	98	The Crystal Structure Of The 10th Pdz Domain Of Mpd		2e-08
2byg_A	117	2nd Pdz Domain Of Discs Large Homologue 2 Length =		2e-08
2qg1_A	92	Crystal Structure Of The 11th Pdz Domain Of Mpdz (M		2e-08
3rl7_B	107	Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc L		3e-08
1zok_A	93	Pdz1 Domain Of Synapse Associated Protein 97 Length		3e-08
2daz_A	124	Solution Structure Of The 7th Pdz Domain Of Inad-Li		4e-08
1um1_A	110	Solution Structure Of Rsgi Ruh-007, Pdz Domain In H		5e-08
2iwo_A	120	12th Pdz Domain Of Multiple Pdz Domain Protein Mpdz		5e-08
4amh_A	106	Influence Of Circular Permutation On The Folding Pa		6e-08
3rl8_A	105	Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc L		7e-08
1qlc_A	95	Solution Structure Of The Second Pdz Domain Of Post		9e-08
2aww_A	105	Synapse Associated Protein 97 Pdz2 Domain Variant C		1e-07
2i0l_A	84	X-Ray Crystal Structure Of Sap97 Pdz2 Bound To The		1e-07
1wfv_A	103	Solution Structure Of The Fifth Pdz Domain Of Human		1e-07
2g2l_A	105	Crystal Structure Of The Second Pdz Domain Of Sap97		1e-07
2oqs_A	97	Structure Of The HdlgSAP97 PDZ2 IN COMPLEX WITH HPV		1e-07
2ogp_A	97	Solution Structure Of The Second Pdz Domain Of Par-		1e-07
2x7z_A	99	Crystal Structure Of The Sap97 Pdz2 I342w C378a Mut		1e-07
2koj_A	111	Solution Structure Of Mouse Par-3 Pdz2 (Residues 45		2e-07
2i04_A	85	X-Ray Crystal Structure Of Magi-1 Pdz1 Bound To The		2e-07
2kpk_A	129	Magi-1 Pdz1 Length = 129		2e-07
2awx_A	105	Synapse Associated Protein 97 Pdz2 Domain Variant C		2e-07
2awu_A	105	Synapse Associated Protein 97 Pdz2 Domain Variant C		2e-07
4g69_A	100	Structure Of The Human Discs Large 1 Pdz2 - Adenoma		2e-07
2kom_A	121	Solution Structure Of Humar Par-3b Pdz2 (Residues 4		3e-07
2fe5_A	94	The Crystal Structure Of The Second Pdz Domain Of H		3e-07
1ueq_A	123	Solution Structure Of The First Pdz Domain Of Human		4e-07
1tp3_A	119	Pdz3 Domain Of Psd-95 Protein Complexed With Kketpv		4e-07
2db5_A	128	Solution Structure Of The First Pdz Domain Of Inad-		7e-07
1vj6_A	102	Pdz2 From Ptp-Bl In Complex With The C-Terminal Lig		7e-07
1gm1_A	94	Second Pdz Domain (Pdz2) Of Ptp-Bl Length = 94		8e-07
3i4w_A	104	Crystal Structure Of The Third Pdz Domain Of Psd-95		8e-07
1be9_A	119	The Third Pdz Domain From The Synaptic Protein Psd-		9e-07
2koh_A	111	Nmr Structure Of Mouse Par3-Pdz3 In Complex With Ve		9e-07
2i1n_A	102	Crystal Structure Of The 1st Pdz Domain Of Human Dl		9e-07
2k1z_A	104	Solution Structure Of Par-3 Pdz3 Length = 104		9e-07
2r4h_B	112	Crystal Structure Of A C1190s Mutant Of The 6th Pdz		9e-07
3k82_A	98	Crystal Structure Of The Third Pdz Domain Of Psd-95		1e-06
1uhp_A	107	Solution Structure Of Rsgi Ruh-005, A Pdz Domain In		1e-06
3jxt_A	104	Crystal Structure Of The Third Pdz Domain Of Sap-10		1e-06
1um7_A	113	Solution Structure Of The Third Pdz Domain Of Synap		1e-06
2he2_A	102	Crystal Structure Of The 3rd Pdz Domain Of Human Di		1e-06
1uju_A	111	Solution Structure Of The Fourth Pdz Domain Of Huma		2e-06
1i16_A	130	Structure Of Interleukin 16: Implications For Funct		3e-06
1wha_A	105	Solution Structure Of The Second Pdz Domain Of Huma		3e-06
3pdz_A	96	Solution Structure Of The Pdz2 Domain From Human Ph		3e-06
1d5g_A	96	Solution Structure Of The Pdz2 Domain From Human Ph		3e-06
2djt_A	104	Solution Structures Of The Pdz Domain Of Human Unna		3e-06
1wg6_A	127	Solution Structure Of Pdz Domain In Protein Xp_1108		3e-06
3axa_A	106	Crystal Structure Of Afadin Pdz Domain In Complex W		3e-06
1xz9_A	101	Structure Of Af-6 Pdz Domain Length = 101		4e-06
1t2m_A	101	Solution Structure Of The Pdz Domain Of Af-6 Length		5e-06
2ain_A	93	Solution Structure Of The Af-6 Pdz Domain Complexed		5e-06
1wi2_A	104	Solution Structure Of The Pdz Domain From Riken Cdn		6e-06
1ozi_A	99	The Alternatively Spliced Pdz2 Domain Of Ptp-Bl Len		7e-06
1x6d_A	119	Solution Structures Of The Pdz Domain Of Human Inte		8e-06
1ihj_A	98	Crystal Structure Of The N-Terminal Pdz Domain Of I		8e-06
2dlu_A	111	Solution Structure Of The Second Pdz Domain Of Huma		1e-05
2h2c_A	107	Crystal Structure Of Zo-1 Pdz1 Bound To A Phage-Der		2e-05
3cbx_A	105	The Dvl2 Pdz Domain In Complex With The C1 Inhibito		2e-05
2h2b_A	107	Crystal Structure Of Zo-1 Pdz1 Bound To A Phage-der		2e-05
3cby_A	108	The Dvl2 Pdz Domain In Complex With The N1 Inhibito		2e-05
3cc0_A	108	The Dvl2 Pdz Domain In Complex With The N3 Inhibito		2e-05
1mc7_A	95	Solution Structure Of Mdvl1 Pdz Domain Length = 95		3e-05
3cbz_A	108	The Dvl2 Pdz Domain In Complex With The N2 Inhibito		3e-05
2kaw_A	90	Nmr Structure Of The Mdvl1 Pdz Domain In Complex Wi		4e-05
1ujd_A	117	Solution Structure Of Rsgi Ruh-003, A Pdz Domain Of		4e-05
2rrm_A	100	Interplay Between Phosphatidyl-Inositol-Phosphates		4e-05
2h3m_A	97	Crystal Structure Of Zo-1 Pdz1 Length = 97		4e-05
2rey_A	100	Crystal Structure Of The Pdz Domain Of Human Dishev		4e-05
3k1r_A	192	Structure Of Harmonin Npdz1 In Complex With The Sam		5e-05
2i0i_A	85	X-Ray Crystal Structure Of Sap97 Pdz3 Bound To The		5e-05
2csj_A	117	Solution Structure Of N-Terminal Pdz Domain From Mo		5e-05
1u3b_A	185	Auto-Inhibition Mechanism Of X11sMINTS FAMILY SCAFF		6e-05
2fcf_A	103	The Crystal Structure Of The 7th Pdz Domain Of Mpdz		6e-05
2iwq_A	123	7th Pdz Domain Of Multiple Pdz Domain Protein Mpdz		7e-05
2dkr_A	93	Solution Structure Of The Pdz Domain From Human Lin		7e-05
1uf1_A	128	Solution Structure Of The Second Pdz Domain Of Huma		8e-05
2vwr_A	95	Crystal Structure Of The Second Pdz Domain Of Numb-		9e-05
1pdr_A	99	Crystal Structure Of The Third Pdz Domain From The		9e-05
1uep_A	103	Solution Structure Of The Third Pdz Domain Of Human		9e-05
1u38_A	89	Auto-Inhibition Mechanism Of X11sMINTS FAMILY SCAFF		1e-04
1wh1_A	124	Solution Structure Of The Fourth Pdz Domain Of Kiaa		1e-04
2d92_A	108	Solution Structure Of The Fifth Pdz Domain Of Inad-		1e-04
1q7x_A	108	Solution Structure Of The Alternatively Spliced Pdz		1e-04
1uez_A	101	Solution Structure Of The First Pdz Domain Of Human		2e-04
2fn5_A	94	Nmr Structure Of The Neurabin Pdz Domain (502-594)		2e-04
2lc6_A	128	Solution Structure Of Par-6 Q144cL164C Length = 128		2e-04
1rzx_A	98	Crystal Structure Of A Par-6 Pdz-Peptide Complex Le		2e-04
1ry4_A	128	Nmr Structure Of The Crib-Pdz Module Of Par-6 Lengt		3e-04
1x8s_A	102	Structure Of The Par-6 Pdz Domain With A Pals1 Inte		3e-04
1x45_A	98	Solution Structure Of The First Pdz Domain Of Amylo		3e-04
1l6o_A	95	Xenopus Dishevelled Pdz Domain Length = 95		4e-04
1wf8_A	107	Solution Structure Of The Pdz Domain Of Spinophilin		4e-04
2f0a_A	98	Crystal Structure Of Monomeric Uncomplexed Form Of		4e-04
3fy5_A	91	Dishevelled Pdz Domain Homodimer Length = 91		4e-04
3b76_A	118	Crystal Structure Of The Third Pdz Domain Of Human		4e-04
3r0h_A	206	Structure Of Inad Pdz45 In Complex With Ng2 Peptide		4e-04
1v6b_A	118	Solution Structure Of The Third Pdz Domain Of Mouse		5e-04
2iwn_A	97	3rd Pdz Domain Of Multiple Pdz Domain Protein Mpdz		6e-04
2g5m_B	113	Spinophilin Pdz Domain Length = 113		7e-04
3hvq_C	170	Crystal Structure Of A Complex Between Protein Phos		8e-04
3hpm_A	111	Oxidized Dimeric Pick1 Pdz C46g Mutant In Complex W		8e-04

>pdb|2FNE|A Chain A, The Crystal Structure Of The 13th Pdz Domain Of Mpdz Length = 117

Iteration: 1
 Score = 84.3 bits (207), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 40/85 (47%), Positives = 60/85 (70%), Gaps = 3/85 (3%)
Query: 578 TIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQV 637
           +I  E+GP   GLGF+IVGG  SP G + I++K++   G A+EDGRLK GD+I+A+NGQ 
Sbjct: 28  SITLERGP--DGLGFSIVGGYGSPHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQS 85
Query: 638 CHDLTHLEAISLFKTIKNGSISLHI 662
              +TH EA+++ K  K G+++L +
Sbjct: 86  LEGVTHEEAVAILKRTK-GTVTLMV 109

>pdb|2O2T|A Chain A, The Crystal Structure Of The 1st Pdz Domain Of Mpdz Length = 117

Iteration: 1
 Score = 70.9 bits (172), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 41/90 (45%), Positives = 56/90 (62%), Gaps = 3/90 (3%)
Query: 577 HTIVFEK-GPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAING 635
           H  VFE   P   GLGF++VG +   RG +GIF++ I +   A  DGRLKE D+ILAING
Sbjct: 20  HVEVFELLKPPSGGLGFSVVGLRSENRGELGIFVQEIQEGSVAHRDGRLKETDQILAING 79
Query: 636 QVC-HDLTHLEAISLFKTIKNGSISLHICR 664
           Q     +TH +AIS+ +  K+ ++ L I R
Sbjct: 80  QALDQTITHQQAISILQKAKD-TVQLVIAR 108

>pdb|2JIK|A Chain A, Crystal Structure Of Pdz Domain Of Synaptojanin-2 Binding Protein Length = 101

Iteration: 1
 Score = 68.6 bits (166), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 39/85 (45%), Positives = 54/85 (63%), Gaps = 3/85 (3%)
Query: 586 GKKGLGFTIVGGKDSP--RGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTH 643
           G  GLGF IVGG D        GI++  I +NG AA DGRL+EGD+IL++NGQ   +L H
Sbjct: 16  GPSGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLH 75
Query: 644 LEAISLFKTIKNGSISLHICRRLKS 668
            +A+ LF+     ++SL +  RL+S
Sbjct: 76  QDAVDLFRN-AGYAVSLRVQHRLES 99

>pdb|2ENO|A Chain A, Solution Structure Of The Pdz Domain From Human Synaptojanin 2 Binding Protein Length = 120

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 38/84 (45%), Positives = 53/84 (63%), Gaps = 3/84 (3%)
Query: 586 GKKGLGFTIVGGKDSP--RGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTH 643
           G  GLGF IVGG D        GI++  I +NG AA DGRL+EGD+IL++NGQ   +L H
Sbjct: 26  GPSGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLH 85
Query: 644 LEAISLFKTIKNGSISLHICRRLK 667
            +A+ LF+     ++SL +  RL+
Sbjct: 86  QDAVDLFRN-AGYAVSLRVQHRLQ 108

>pdb|2JIN|A Chain A, Crystal Structure Of Pdz Domain Of Synaptojanin-2 Binding Protein Length = 102

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 38/85 (44%), Positives = 52/85 (61%), Gaps = 3/85 (3%)
Query: 586 GKKGLGFTIVGGKDSP--RGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTH 643
           G  GLGF IVGG D        GI++  I +NG AA DGRL+EGD+IL++NGQ   +L H
Sbjct: 18  GPSGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLH 77
Query: 644 LEAISLFKTIKNGSISLHICRRLKS 668
            +A+ LF+     ++SL +  R  S
Sbjct: 78  QDAVDLFRN-AGYAVSLRVQHRESS 101

>pdb|2XKX|A Chain A, Single Particle Analysis Of Psd-95 In Negative Stain Length = 721

Iteration: 1
 Score = 62.4 bits (150), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 65/230 (28%), Positives = 99/230 (43%), Gaps = 40/230 (17%)
Query: 422 VAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISRTSLKK 481
           V  I+ GG A K+G L++GD+I++VN   L  +    A + + +     D++     LK 
Sbjct: 188 VTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKN---TYDVVY----LKV 240
Query: 482 SNAENEYNESHSREKKSKETRFSLDKQNDFESSNEQDKNNQKRLFQKNCHSINNKLLRKA 541
           +   N Y  S S       T +S    N+   S+         L      ++     R+ 
Sbjct: 241 AKPSNAYL-SDSYAPPDITTSYSQHLDNEISHSS--------YLGTDYPTAMTPTSPRRY 291
Query: 542 IISTGSISGDEEETILTSTNFCTLPRRPRSAICTFHTIVFEKGPGKKGLGFTIVGGKDSP 601
                 + G+E+           +PR PR        IV  +G    GLGF IVGG+D  
Sbjct: 292 SPVAKDLLGEED-----------IPREPRR-------IVIHRG--STGLGFNIVGGEDGE 331
Query: 602 RGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFK 651
               GIFI  IL  G A   G L++GD+IL++NG    + +H +A    K
Sbjct: 332 ----GIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALK 377

>pdb|2XKX|A Chain A, Single Particle Analysis Of Psd-95 In Negative Stain Length = 721

Iteration: 1
 Score = 59.7 bits (143), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 39/95 (41%), Positives = 53/95 (55%), Gaps = 11/95 (11%)
Query: 576 FHTIVFEKGPGKKGLGFTIVGGKDSPRGAIG----IFIKSILDNGQAAEDGRLKEGDEIL 631
           +  I  E+G    GLGF+I GG D+P   IG    IFI  I+  G AA+DGRL+  D IL
Sbjct: 60  YEEITLERG--NSGLGFSIAGGTDNPH--IGDDPSIFITKIIPGGAAAQDGRLRVNDSIL 115
Query: 632 AINGQVCHDLTHLEAISLFKTIKNGSI-SLHICRR 665
            +N     ++TH  A+   K  + GSI  L++ RR
Sbjct: 116 FVNEVDVREVTHSAAVEALK--EAGSIVRLYVMRR 148

>pdb|2DM8|A Chain A, Solution Structure Of The Eighth Pdz Domain Of Human Inad- Like Protein Length = 116

Iteration: 1
 Score = 62.0 bits (149), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 32/73 (43%), Positives = 45/73 (61%), Gaps = 2/73 (2%)
Query: 579 IVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVC 638
           ++ E   G+ GLG +IVGGKD+P  AI   I  + + G AA DGRL  GD+IL +NG   
Sbjct: 19  MIIEISKGRSGLGLSIVGGKDTPLNAI--VIHEVYEEGAAARDGRLWAGDQILEVNGVDL 76
Query: 639 HDLTHLEAISLFK 651
            + +H EAI+  +
Sbjct: 77  RNSSHEEAITALR 89

>pdb|3ZRT|A Chain A, Crystal Structure Of Human Psd-95 Pdz1-2 Length = 199

Iteration: 1
 Score = 60.5 bits (145), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 41/102 (40%), Positives = 57/102 (55%), Gaps = 12/102 (11%)
Query: 569 PRSAICTFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIG----IFIKSILDNGQAAEDGRL 624
           PR ++  +  I  E+G    GLGF+I GG D+P   IG    IFI  I+  G AA+DGRL
Sbjct: 7   PRGSM-EYEEITLERG--NSGLGFSIAGGTDNPH--IGDDPSIFITKIIPGGAAAQDGRL 61
Query: 625 KEGDEILAINGQVCHDLTHLEAISLFKTIKNGSI-SLHICRR 665
           +  D IL +N     ++TH  A+   K  + GSI  L++ RR
Sbjct: 62  RVNDSILFVNEVDVREVTHSAAVEALK--EAGSIVRLYVMRR 101

>pdb|2WL7|A Chain A, Crystal Structure Of The Psd93 Pdz1 Domain Length = 102

Iteration: 1
 Score = 59.3 bits (142), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 39/93 (41%), Positives = 53/93 (56%), Gaps = 7/93 (7%)
Query: 576 FHTIVFEKGPGKKGLGFTIVGGKDSPR--GAIGIFIKSILDNGQAAEDGRLKEGDEILAI 633
           F  I  E+G    GLGF+I GG D+P      GIFI  I+  G AAEDGRL+  D IL +
Sbjct: 10  FEEITLERG--NSGLGFSIAGGTDNPHIGDDPGIFITKIIPGGAAAEDGRLRVNDCILRV 67
Query: 634 NGQVCHDLTHLEAISLFKTIKNGSI-SLHICRR 665
           N     +++H +A+   K  + GSI  L++ RR
Sbjct: 68  NEVDVSEVSHSKAVEALK--EAGSIVRLYVRRR 98

>pdb|2KA9|A Chain A, Solution Structure Of Psd-95 Pdz12 Complexed With Cypin Peptide Length = 189

Iteration: 1
 Score = 58.9 bits (141), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 39/95 (41%), Positives = 53/95 (55%), Gaps = 11/95 (11%)
Query: 576 FHTIVFEKGPGKKGLGFTIVGGKDSPRGAIG----IFIKSILDNGQAAEDGRLKEGDEIL 631
           +  I  E+G    GLGF+I GG D+P   IG    IFI  I+  G AA+DGRL+  D IL
Sbjct: 3   YEEITLERG--NSGLGFSIAGGTDNPH--IGDDPSIFITKIIPGGAAAQDGRLRVNDSIL 58
Query: 632 AINGQVCHDLTHLEAISLFKTIKNGSI-SLHICRR 665
            +N     ++TH  A+   K  + GSI  L++ RR
Sbjct: 59  FVNEVDVREVTHSAAVEALK--EAGSIVRLYVMRR 91

>pdb|3GSL|A Chain A, Crystal Structure Of Psd-95 Tandem Pdz Domains 1 And 2 Length = 196

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 39/95 (41%), Positives = 53/95 (55%), Gaps = 11/95 (11%)
Query: 576 FHTIVFEKGPGKKGLGFTIVGGKDSPRGAIG----IFIKSILDNGQAAEDGRLKEGDEIL 631
           +  I  E+G    GLGF+I GG D+P   IG    IFI  I+  G AA+DGRL+  D IL
Sbjct: 6   YEEITLERG--NSGLGFSIAGGTDNPH--IGDDPSIFITKIIPGGAAAQDGRLRVNDSIL 61
Query: 632 AINGQVCHDLTHLEAISLFKTIKNGSI-SLHICRR 665
            +N     ++TH  A+   K  + GSI  L++ RR
Sbjct: 62  FVNEVDVREVTHSAAVEALK--EAGSIVRLYVMRR 94

>pdb|1IU0|A Chain A, The First Pdz Domain Of Psd-95 Length = 91

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 39/95 (41%), Positives = 53/95 (55%), Gaps = 11/95 (11%)
Query: 576 FHTIVFEKGPGKKGLGFTIVGGKDSPRGAIG----IFIKSILDNGQAAEDGRLKEGDEIL 631
           +  I  E+G    GLGF+I GG D+P   IG    IFI  I+  G AA+DGRL+  D IL
Sbjct: 3   YEEITLERG--NSGLGFSIAGGTDNPH--IGDDPSIFITKIIPGGAAAQDGRLRVNDSIL 58
Query: 632 AINGQVCHDLTHLEAISLFKTIKNGSI-SLHICRR 665
            +N     ++TH  A+   K  + GSI  L++ RR
Sbjct: 59  FVNEVDVREVTHSAAVEALK--EAGSIVRLYVMRR 91

>pdb|1RGR|A Chain A, Cyclic Peptides Targeting Pdz Domains Of Psd-95: Structural Basis For Enhanced Affinity And Enzymatic Stability Length = 99

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 39/95 (41%), Positives = 53/95 (55%), Gaps = 11/95 (11%)
Query: 576 FHTIVFEKGPGKKGLGFTIVGGKDSPRGAIG----IFIKSILDNGQAAEDGRLKEGDEIL 631
           +  I  E+G    GLGF+I GG D+P   IG    IFI  I+  G AA+DGRL+  D IL
Sbjct: 2   YEEITLERG--NSGLGFSIAGGTDNPH--IGDDPSIFITKIIPGGAAAQDGRLRVNDSIL 57
Query: 632 AINGQVCHDLTHLEAISLFKTIKNGSI-SLHICRR 665
            +N     ++TH  A+   K  + GSI  L++ RR
Sbjct: 58  FVNEVDVREVTHSAAVEALK--EAGSIVRLYVMRR 90

>pdb|1KEF|A Chain A, Pdz1 Of Sap90 Length = 93

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 39/95 (41%), Positives = 53/95 (55%), Gaps = 11/95 (11%)
Query: 576 FHTIVFEKGPGKKGLGFTIVGGKDSPRGAIG----IFIKSILDNGQAAEDGRLKEGDEIL 631
           +  I  E+G    GLGF+I GG D+P   IG    IFI  I+  G AA+DGRL+  D IL
Sbjct: 2   YEEITLERG--NSGLGFSIAGGTDNPH--IGDDPSIFITKIIPGGAAAQDGRLRVNDSIL 57
Query: 632 AINGQVCHDLTHLEAISLFKTIKNGSI-SLHICRR 665
            +N     ++TH  A+   K  + GSI  L++ RR
Sbjct: 58  FVNEVDVREVTHSAAVEALK--EAGSIVRLYVMRR 90

>pdb|2OPG|A Chain A, The Crystal Structure Of The 10th Pdz Domain Of Mpdz Length = 98

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/70 (44%), Positives = 42/70 (60%), Gaps = 2/70 (2%)
Query: 582 EKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDL 641
           E   G+ GLG +IVGG D+  GAI   I  + + G A +DGRL  GD+IL +NG      
Sbjct: 9   EISKGRTGLGLSIVGGSDTLLGAI--IIHEVYEEGAACKDGRLWAGDQILEVNGIDLRKA 66
Query: 642 THLEAISLFK 651
           TH EAI++ +
Sbjct: 67  THDEAINVLR 76

>pdb|2BYG|A Chain A, 2nd Pdz Domain Of Discs Large Homologue 2 Length = 117

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/71 (42%), Positives = 44/71 (61%), Gaps = 4/71 (5%)
Query: 583 KGPGKKGLGFTIVGGKDSPR--GAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHD 640
           KGP  KGLGF+I GG  +    G   I++  I+D G A +DGRL+ GD +L +N     +
Sbjct: 32  KGP--KGLGFSIAGGVGNQHIPGDNSIYVTKIIDGGAAQKDGRLQVGDRLLMVNNYSLEE 89
Query: 641 LTHLEAISLFK 651
           +TH EA+++ K
Sbjct: 90  VTHEEAVAILK 100

>pdb|2QG1|A Chain A, Crystal Structure Of The 11th Pdz Domain Of Mpdz (Mupp1) Length = 92

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/87 (39%), Positives = 50/87 (57%), Gaps = 6/87 (6%)
Query: 578 TIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQV 637
           TI  +K PGK GLG +IVG     R   G+F+  I+  G A  DGRL +GD+IL +NG+ 
Sbjct: 7   TIGLQKKPGK-GLGLSIVG----KRNDTGVFVSDIVKGGIADADGRLMQGDQILMVNGED 61
Query: 638 CHDLTHLEAISLFKTIKNGSISLHICR 664
             + T  EA++       G+++L + R
Sbjct: 62  VRNATQ-EAVAALLKCSLGTVTLEVGR 87

>pdb|3RL7|B Chain B, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc Length = 107

Iteration: 1
 Score = 57.0 bits (136), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 40/95 (42%), Positives = 54/95 (56%), Gaps = 11/95 (11%)
Query: 576 FHTIVFEKGPGKKGLGFTIVGGKDSPRGAIG----IFIKSILDNGQAAEDGRLKEGDEIL 631
           +  I  E+G    GLGF+I GG D+P   IG    IFI  I+  G AA+DGRL+  D IL
Sbjct: 12  YEEITLERG--NSGLGFSIAGGTDNPH--IGDDSSIFITKIITGGAAAQDGRLRVNDCIL 67
Query: 632 AINGQVCHDLTHLEAISLFKTIKNGSI-SLHICRR 665
            +N     D+TH +A+   K  + GSI  L++ RR
Sbjct: 68  RVNEVDVRDVTHSKAVEALK--EAGSIVRLYVKRR 100

>pdb|1ZOK|A Chain A, Pdz1 Domain Of Synapse Associated Protein 97 Length = 93

Iteration: 1
 Score = 57.0 bits (136), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 40/95 (42%), Positives = 54/95 (56%), Gaps = 11/95 (11%)
Query: 576 FHTIVFEKGPGKKGLGFTIVGGKDSPRGAIG----IFIKSILDNGQAAEDGRLKEGDEIL 631
           +  I  E+G    GLGF+I GG D+P   IG    IFI  I+  G AA+DGRL+  D IL
Sbjct: 2   YEEITLERG--NSGLGFSIAGGTDNPH--IGDDSSIFITKIITGGAAAQDGRLRVNDCIL 57
Query: 632 AINGQVCHDLTHLEAISLFKTIKNGSI-SLHICRR 665
            +N     D+TH +A+   K  + GSI  L++ RR
Sbjct: 58  RVNEADVRDVTHSKAVEALK--EAGSIVRLYVKRR 90

>pdb|2DAZ|A Chain A, Solution Structure Of The 7th Pdz Domain Of Inad-Like Protein Length = 124

Iteration: 1
 Score = 57.0 bits (136), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 32/77 (41%), Positives = 44/77 (57%), Gaps = 4/77 (5%)
Query: 576 FHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAING 635
            H I  EK   K GLG ++ G KD  R  + IF+  I   G AA DGR++ GDE+L IN 
Sbjct: 26  LHIIELEKD--KNGLGLSLAGNKDRSR--MSIFVVGINPEGPAAADGRMRIGDELLEINN 81
Query: 636 QVCHDLTHLEAISLFKT 652
           Q+ +  +H  A ++ KT
Sbjct: 82  QILYGRSHQNASAIIKT 98

>pdb|1UM1|A Chain A, Solution Structure Of Rsgi Ruh-007, Pdz Domain In Human Cdna Length = 110

Iteration: 1
 Score = 56.6 bits (135), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 29/74 (39%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
Query: 578 TIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQV 637
           T+  E+GP   GLG  ++ G  +  GA G++I+++L    AA DGRL  GD IL +NG  
Sbjct: 11  TVELERGP--SGLGMGLIDGMHTHLGAPGLYIQTLLPGSPAAADGRLSLGDRILEVNGSS 68
Query: 638 CHDLTHLEAISLFK 651
              L +L A+ L +
Sbjct: 69  LLGLGYLRAVDLIR 82

>pdb|2IWO|A Chain A, 12th Pdz Domain Of Multiple Pdz Domain Protein Mpdz (Casp Target) Length = 120

Iteration: 1
 Score = 56.6 bits (135), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 32/87 (36%), Positives = 48/87 (55%), Gaps = 2/87 (2%)
Query: 576 FHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAING 635
             T+  +KGP    LG +I GG  SP G + IFI  +   G AA+  +L+ GD I+ I G
Sbjct: 25  LRTVEMKKGP-TDSLGISIAGGVGSPLGDVPIFIAMMHPTGVAAQTQKLRVGDRIVTICG 83
Query: 636 QVCHDLTHLEAISLFKTIKNGSISLHI 662
                +TH +A++L K   +GSI + +
Sbjct: 84  TSTEGMTHTQAVNLLKN-ASGSIEMQV 109

>pdb|4AMH|A Chain A, Influence Of Circular Permutation On The Folding Pathway Of A Pdz Domain Length = 106

Iteration: 1
 Score = 56.2 bits (134), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 27/72 (37%), Positives = 44/72 (61%), Gaps = 2/72 (2%)
Query: 586 GKKGLGFTIVGGKDSPR--GAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTH 643
           G KGLGF+I GG  +    G   I++  I++ G A +DG+L+ GD++LA+N     ++TH
Sbjct: 11  GSKGLGFSIAGGVGNQHWPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVALEEVTH 70
Query: 644 LEAISLFKTIKN 655
            EA++  K   +
Sbjct: 71  EEAVTALKNTSD 82

>pdb|3RL8|A Chain A, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc Length = 105

Iteration: 1
 Score = 55.8 bits (133), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 29/75 (38%), Positives = 46/75 (61%), Gaps = 4/75 (5%)
Query: 583 KGPGKKGLGFTIVGGKDSPR--GAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHD 640
           KGP  KGLGF+I GG  +    G   I++  I++ G A +DG+L+ GD++LA+N     +
Sbjct: 19  KGP--KGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVCLEE 76
Query: 641 LTHLEAISLFKTIKN 655
           +TH EA++  K   +
Sbjct: 77  VTHEEAVTALKNTSD 91

>pdb|1QLC|A Chain A, Solution Structure Of The Second Pdz Domain Of Postsynaptic Density-95 Length = 95

Iteration: 1
 Score = 55.5 bits (132), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 30/71 (42%), Positives = 44/71 (61%), Gaps = 4/71 (5%)
Query: 583 KGPGKKGLGFTIVGGKDSPR--GAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHD 640
           KGP  KGLGF+I GG  +    G   I++  I++ G A +DGRL+ GD+ILA+N     D
Sbjct: 11  KGP--KGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLED 68
Query: 641 LTHLEAISLFK 651
           + H +A++  K
Sbjct: 69  VMHEDAVAALK 79

>pdb|2AWW|A Chain A, Synapse Associated Protein 97 Pdz2 Domain Variant C378g With C-Terminal Glur-A Peptide Length = 105

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/75 (40%), Positives = 47/75 (62%), Gaps = 4/75 (5%)
Query: 583 KGPGKKGLGFTIVGGKDSPR--GAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHD 640
           KGP  KGLGF+I GG  +    G   I++ SI++ G A +DG+L+ GD++LA+N     +
Sbjct: 11  KGP--KGLGFSIAGGVGNQHIPGDNSIYVTSIVEGGAAHKDGKLQIGDKLLAVNSVGLEE 68
Query: 641 LTHLEAISLFKTIKN 655
           +TH EA++  K   +
Sbjct: 69  VTHEEAVTALKNTSD 83

>pdb|2I0L|A Chain A, X-Ray Crystal Structure Of Sap97 Pdz2 Bound To The C- Terminal Peptide Of Hpv18 E6. Length = 84

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/75 (38%), Positives = 46/75 (61%), Gaps = 4/75 (5%)
Query: 583 KGPGKKGLGFTIVGGKDSPR--GAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHD 640
           KGP  KGLGF+I GG  +    G   I++  I++ G A +DG+L+ GD++LA+N     +
Sbjct: 6   KGP--KGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVCLEE 63
Query: 641 LTHLEAISLFKTIKN 655
           +TH EA++  K   +
Sbjct: 64  VTHEEAVTALKNTSD 78

>pdb|1WFV|A Chain A, Solution Structure Of The Fifth Pdz Domain Of Human Membrane Associated Guanylate Kinase Inverted-2 (Kiaa0705 Protein) Length = 103

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/77 (36%), Positives = 48/77 (62%), Gaps = 5/77 (6%)
Query: 576 FHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAING 635
           + T+  EKG   KG GF+I GG++     + +++  + ++G A  +GR++ GD+I+ ING
Sbjct: 12  YFTVDMEKG--AKGFGFSIRGGREY---KMDLYVLRLAEDGPAIRNGRMRVGDQIIEING 66
Query: 636 QVCHDLTHLEAISLFKT 652
           +   D+TH  AI L K+
Sbjct: 67  ESTRDMTHARAIELIKS 83

>pdb|2G2L|A Chain A, Crystal Structure Of The Second Pdz Domain Of Sap97 In Complex With A Glur-A C-Terminal Peptide Length = 105

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/75 (38%), Positives = 46/75 (61%), Gaps = 4/75 (5%)
Query: 583 KGPGKKGLGFTIVGGKDSPR--GAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHD 640
           KGP  KGLGF+I GG  +    G   I++  I++ G A +DG+L+ GD++LA+N     +
Sbjct: 11  KGP--KGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVCLEE 68
Query: 641 LTHLEAISLFKTIKN 655
           +TH EA++  K   +
Sbjct: 69  VTHEEAVTALKNTSD 83

>pdb|2OQS|A Chain A, Structure Of The HdlgSAP97 PDZ2 IN COMPLEX WITH HPV-18 Papillomavirus E6 Peptide Length = 97

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/75 (38%), Positives = 46/75 (61%), Gaps = 4/75 (5%)
Query: 583 KGPGKKGLGFTIVGGKDSPR--GAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHD 640
           KGP  KGLGF+I GG  +    G   I++  I++ G A +DG+L+ GD++LA+N     +
Sbjct: 7   KGP--KGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVCLEE 64
Query: 641 LTHLEAISLFKTIKN 655
           +TH EA++  K   +
Sbjct: 65  VTHEEAVTALKNTSD 79

>pdb|2OGP|A Chain A, Solution Structure Of The Second Pdz Domain Of Par-3 Length = 97

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/81 (37%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
Query: 586 GKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLE 645
           G +GLGF+I     +  G+  I++K+IL  G A +DGRLK GD ++ +NG      +  E
Sbjct: 14  GTEGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLAGKSQEE 73
Query: 646 AISLFKTIK-NGSISLHICRR 665
            +SL ++ K  G++SL + R+
Sbjct: 74  VVSLLRSTKMEGTVSLLVFRQ 94

>pdb|2X7Z|A Chain A, Crystal Structure Of The Sap97 Pdz2 I342w C378a Mutant Protein Domain Length = 99

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/75 (38%), Positives = 46/75 (61%), Gaps = 4/75 (5%)
Query: 583 KGPGKKGLGFTIVGGKDSPR--GAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHD 640
           KGP  KGLGF+I GG  +    G   I++  I++ G A +DG+L+ GD++LA+N     +
Sbjct: 16  KGP--KGLGFSIAGGVGNQHWPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVALEE 73
Query: 641 LTHLEAISLFKTIKN 655
           +TH EA++  K   +
Sbjct: 74  VTHEEAVTALKNTSD 88

>pdb|2KOJ|A Chain A, Solution Structure Of Mouse Par-3 Pdz2 (Residues 450-558) Length = 111

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/81 (37%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
Query: 586 GKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLE 645
           G +GLGF+I     +  G+  I++K+IL  G A +DGRLK GD ++ +NG      +  E
Sbjct: 20  GTEGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLAGKSQEE 79
Query: 646 AISLFKTIK-NGSISLHICRR 665
            +SL ++ K  G++SL + R+
Sbjct: 80  VVSLLRSTKMEGTVSLLVFRQ 100

>pdb|2I04|A Chain A, X-Ray Crystal Structure Of Magi-1 Pdz1 Bound To The C- Terminal Peptide Of Hpv18 E6 Length = 85

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/78 (38%), Positives = 49/78 (62%), Gaps = 4/78 (5%)
Query: 588 KGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAI 647
           +G GFT+VGG D P   + I  KS++ +G AA DG+++ GD I+++N       TH + +
Sbjct: 11  RGFGFTVVGG-DEPDEFLQI--KSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVV 67
Query: 648 SLFKTIKNG-SISLHICR 664
            +F++I  G S+ L +CR
Sbjct: 68  KIFQSIPIGASVDLELCR 85

>pdb|2KPK|A Chain A, Magi-1 Pdz1 Length = 129

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/78 (38%), Positives = 49/78 (62%), Gaps = 4/78 (5%)
Query: 588 KGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAI 647
           +G GFT+VGG D P   + I  KS++ +G AA DG+++ GD I+++N       TH + +
Sbjct: 29  RGFGFTVVGG-DEPDEFLQI--KSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVV 85
Query: 648 SLFKTIKNG-SISLHICR 664
            +F++I  G S+ L +CR
Sbjct: 86  KIFQSIPIGASVDLELCR 103

>pdb|2AWX|A Chain A, Synapse Associated Protein 97 Pdz2 Domain Variant C378s Length = 105

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/75 (38%), Positives = 46/75 (61%), Gaps = 4/75 (5%)
Query: 583 KGPGKKGLGFTIVGGKDSPR--GAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHD 640
           KGP  KGLGF+I GG  +    G   I++  I++ G A +DG+L+ GD++LA+N     +
Sbjct: 11  KGP--KGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVSLEE 68
Query: 641 LTHLEAISLFKTIKN 655
           +TH EA++  K   +
Sbjct: 69  VTHEEAVTALKNTSD 83

>pdb|2AWU|A Chain A, Synapse Associated Protein 97 Pdz2 Domain Variant C378g Length = 105

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/75 (38%), Positives = 46/75 (61%), Gaps = 4/75 (5%)
Query: 583 KGPGKKGLGFTIVGGKDSPR--GAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHD 640
           KGP  KGLGF+I GG  +    G   I++  I++ G A +DG+L+ GD++LA+N     +
Sbjct: 11  KGP--KGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVGLEE 68
Query: 641 LTHLEAISLFKTIKN 655
           +TH EA++  K   +
Sbjct: 69  VTHEEAVTALKNTSD 83

>pdb|4G69|A Chain A, Structure Of The Human Discs Large 1 Pdz2 - Adenomatous Polyposis Coli Cytoskeletal Polarity Complex Length = 100

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/75 (38%), Positives = 46/75 (61%), Gaps = 4/75 (5%)
Query: 583 KGPGKKGLGFTIVGGKDSPR--GAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHD 640
           KGP  KGLGF+I GG  +    G   I++  I++ G A +DG+L+ GD++LA+N     +
Sbjct: 17  KGP--KGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVCLEE 74
Query: 641 LTHLEAISLFKTIKN 655
           +TH EA++  K   +
Sbjct: 75  VTHEEAVTALKNTSD 89

>pdb|2KOM|A Chain A, Solution Structure Of Humar Par-3b Pdz2 (Residues 451-549) Length = 121

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 30/81 (37%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
Query: 586 GKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLE 645
           G +GLGF+I     +  G+  I++K+IL  G A +DGRLK GD ++ +NG      +  E
Sbjct: 39  GTEGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLVGKSQEE 98
Query: 646 AISLFKTIK-NGSISLHICRR 665
            +SL ++ K  G++SL + R+
Sbjct: 99  VVSLLRSTKMEGTVSLLVFRQ 119

>pdb|2FE5|A Chain A, The Crystal Structure Of The Second Pdz Domain Of Human Dlg3 Length = 94

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 31/75 (41%), Positives = 44/75 (58%), Gaps = 4/75 (5%)
Query: 583 KGPGKKGLGFTIVGGKDSPR--GAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHD 640
           KGP  KGLGF+I GG  +    G   I+I  I++ G A +DGRL+ GD +LA+N     D
Sbjct: 11  KGP--KGLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQD 68
Query: 641 LTHLEAISLFKTIKN 655
           + H EA++  K   +
Sbjct: 69  VRHEEAVASLKNTSD 83

>pdb|1UEQ|A Chain A, Solution Structure Of The First Pdz Domain Of Human Atrophin-1 Interacting Protein 1 (Kiaa0705 Protein) Length = 123

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 33/91 (36%), Positives = 54/91 (59%), Gaps = 6/91 (6%)
Query: 575 TFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAIN 634
           TF +   +K     G GFTI+GG D P   + +  KS++ +G AA+DG+++ GD I+ IN
Sbjct: 19  TFLSTTLKKS--NMGFGFTIIGG-DEPDEFLQV--KSVIPDGPAAQDGKMETGDVIVYIN 73
Query: 635 GQVCHDLTHLEAISLFKTIKNG-SISLHICR 664
                  TH + + LF+++  G S++L +CR
Sbjct: 74  EVCVLGHTHADVVKLFQSVPIGQSVNLVLCR 104

>pdb|1TP3|A Chain A, Pdz3 Domain Of Psd-95 Protein Complexed With Kketpv Peptide Ligand Length = 119

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 34/82 (41%), Positives = 45/82 (54%), Gaps = 13/82 (15%)
Query: 565 LPRRPRSAICTFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRL 624
           +PR PR        IV  +G    GLGF IVGG+D      GIFI  IL  G A   G L
Sbjct: 11  IPREPRR-------IVIHRG--STGLGFNIVGGEDGE----GIFISFILAGGPADLSGEL 57
Query: 625 KEGDEILAINGQVCHDLTHLEA 646
           ++GD+IL++NG    + +H +A
Sbjct: 58  RKGDQILSVNGVDLRNASHEQA 79

>pdb|2DB5|A Chain A, Solution Structure Of The First Pdz Domain Of Inad-Like Protein Length = 128

Iteration: 1
 Score = 52.8 bits (125), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 30/81 (37%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 585 PGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAIN-GQVCHDLTH 643
           P   GLGF++V  +    G + IF+K +     A  D RLKE D+ILAIN   +  +++H
Sbjct: 34  PSTGGLGFSVVALRSQNLGKVDIFVKDVQPGSVADRDQRLKENDQILAINHTPLDQNISH 93
Query: 644 LEAISLFKTIKNGSISLHICR 664
            +AI+L +    GS+ L + R
Sbjct: 94  QQAIALLQQ-TTGSLRLIVAR 113

>pdb|1VJ6|A Chain A, Pdz2 From Ptp-Bl In Complex With The C-Terminal Ligand From The Apc Protein Length = 102

Iteration: 1
 Score = 52.8 bits (125), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 25/73 (34%), Positives = 44/73 (60%), Gaps = 3/73 (4%)
Query: 590 LGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISL 649
           LG ++ GG ++     GI++K+I+  G A  DGR+ +GD +LA+NG      TH +A+  
Sbjct: 25  LGISVTGGVNTSVRHGGIYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEGATHKQAV-- 82
Query: 650 FKTIKNGSISLHI 662
            +T++N    +H+
Sbjct: 83  -ETLRNTGQVVHL 94

>pdb|1GM1|A Chain A, Second Pdz Domain (Pdz2) Of Ptp-Bl Length = 94

Iteration: 1
 Score = 52.4 bits (124), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 25/73 (34%), Positives = 44/73 (60%), Gaps = 3/73 (4%)
Query: 590 LGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISL 649
           LG ++ GG ++     GI++K+I+  G A  DGR+ +GD +LA+NG      TH +A+  
Sbjct: 17  LGISVTGGVNTSVRHGGIYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEGATHKQAV-- 74
Query: 650 FKTIKNGSISLHI 662
            +T++N    +H+
Sbjct: 75  -ETLRNTGQVVHL 86

>pdb|3I4W|A Chain A, Crystal Structure Of The Third Pdz Domain Of Psd-95 Length = 104

Iteration: 1
 Score = 52.4 bits (124), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 33/82 (40%), Positives = 44/82 (53%), Gaps = 13/82 (15%)
Query: 565 LPRRPRSAICTFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRL 624
           +PR PR        IV  +G    GLGF IVGG+       GIFI  IL  G A   G L
Sbjct: 8   IPREPRR-------IVIHRG--STGLGFNIVGGEXGE----GIFISFILAGGPADLSGEL 54
Query: 625 KEGDEILAINGQVCHDLTHLEA 646
           ++GD+IL++NG    + +H +A
Sbjct: 55  RKGDQILSVNGVDLRNASHEQA 76

>pdb|1BE9|A Chain A, The Third Pdz Domain From The Synaptic Protein Psd-95 In Complex With A C-Terminal Peptide Derived From Cript. Length = 119

Iteration: 1
 Score = 52.4 bits (124), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 33/82 (40%), Positives = 45/82 (54%), Gaps = 13/82 (15%)
Query: 565 LPRRPRSAICTFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRL 624
           +PR PR        IV  +G    GLGF I+GG+D      GIFI  IL  G A   G L
Sbjct: 11  IPREPRR-------IVIHRG--STGLGFNIIGGEDGE----GIFISFILAGGPADLSGEL 57
Query: 625 KEGDEILAINGQVCHDLTHLEA 646
           ++GD+IL++NG    + +H +A
Sbjct: 58  RKGDQILSVNGVDLRNASHEQA 79

>pdb|2KOH|A Chain A, Nmr Structure Of Mouse Par3-Pdz3 In Complex With Ve-Cadherin C-Terminus Length = 111

Iteration: 1
 Score = 52.4 bits (124), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 54/88 (61%), Gaps = 7/88 (7%)
Query: 586 GKKGLGFTIVGGKDSPRGA-IGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHL 644
           G  GLG ++ G +     A +GIF+KSI++ G A++DGRL+  D+++A+NG+      + 
Sbjct: 19  GSAGLGVSVKGNRSKENHADLGIFVKSIINGGAASKDGRLRVNDQLIAVNGESLLGKANQ 78
Query: 645 EAI-SLFKTI-----KNGSISLHICRRL 666
           EA+ +L +++     K G I L + RR+
Sbjct: 79  EAMETLRRSMSTEGNKRGMIQLIVARRI 106

>pdb|2I1N|A Chain A, Crystal Structure Of The 1st Pdz Domain Of Human Dlg3 Length = 102

Iteration: 1
 Score = 52.4 bits (124), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 31/78 (39%), Positives = 41/78 (52%), Gaps = 4/78 (5%)
Query: 576 FHTIVFEKGPGKKGLGFTIVGGKDSPR--GAIGIFIKSILDNGQAAEDGRLKEGDEILAI 633
           +  IV E+G    GLGF+I GG D+P      GIFI  I+  G AA DGRL   D +L +
Sbjct: 5   YEEIVLERG--NSGLGFSIAGGIDNPHVPDDPGIFITKIIPGGAAAMDGRLGVNDCVLRV 62
Query: 634 NGQVCHDLTHLEAISLFK 651
           N     ++ H  A+   K
Sbjct: 63  NEVDVSEVVHSRAVEALK 80

>pdb|2K1Z|A Chain A, Solution Structure Of Par-3 Pdz3 Length = 104

Iteration: 1
 Score = 52.4 bits (124), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 54/88 (61%), Gaps = 7/88 (7%)
Query: 586 GKKGLGFTIVGGKDSPRGA-IGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHL 644
           G  GLG ++ G +     A +GIF+KSI++ G A++DGRL+  D+++A+NG+      + 
Sbjct: 16  GSAGLGVSVKGNRSKENHADLGIFVKSIINGGAASKDGRLRVNDQLIAVNGESLLGKANQ 75
Query: 645 EAI-SLFKTI-----KNGSISLHICRRL 666
           EA+ +L +++     K G I L + RR+
Sbjct: 76  EAMETLRRSMSTEGNKRGMIQLIVARRI 103

>pdb|2R4H|B Chain B, Crystal Structure Of A C1190s Mutant Of The 6th Pdz Domain Of Human Membrane Associated Guanylate Kinase Length = 112

Iteration: 1
 Score = 52.0 bits (123), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 29/81 (35%), Positives = 49/81 (60%), Gaps = 8/81 (9%)
Query: 576 FHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAING 635
           F+T+  E+G   KG GF++ GG++     + +++  + ++G A   G+++ GDEIL ING
Sbjct: 25  FYTVELERG--AKGFGFSLRGGREY---NMDLYVLRLAEDGPAERSGKMRIGDEILEING 79
Query: 636 QVCHDLTHLEAISLFKTIKNG 656
           +   ++ H  AI L   IKNG
Sbjct: 80  ETTKNMKHSRAIEL---IKNG 97

>pdb|3K82|A Chain A, Crystal Structure Of The Third Pdz Domain Of Psd-95 Length = 98

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/82 (40%), Positives = 44/82 (53%), Gaps = 13/82 (15%)
Query: 565 LPRRPRSAICTFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRL 624
           +PR PR        IV  +G    GLGF IVGG+       GIFI  IL  G A   G L
Sbjct: 3   IPREPRR-------IVIHRG--STGLGFNIVGGEXGE----GIFISFILAGGPADLSGEL 49
Query: 625 KEGDEILAINGQVCHDLTHLEA 646
           ++GD+IL++NG    + +H +A
Sbjct: 50  RKGDQILSVNGVDLRNASHEQA 71

>pdb|1UHP|A Chain A, Solution Structure Of Rsgi Ruh-005, A Pdz Domain In Human Cdna, Kiaa1095 Length = 107

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 34/93 (36%), Positives = 52/93 (55%), Gaps = 8/93 (8%)
Query: 578 TIVFEKGPGKKGLGFTIVGGKDS-----PRGAIGIFIKSILDNGQAAEDGRLKEGDEILA 632
           T+V  +  G   LGF I+GG+ S        + GIF+  I+D+G AA++G L+  D I+ 
Sbjct: 11  TLVLHRDSGS--LGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRIIE 68
Query: 633 INGQVCHDLTHLEAISLFKTIKNGSISLHICRR 665
           +NG+     TH +A+  FKT K   I + + RR
Sbjct: 69  VNGRDLSRATHDQAVEAFKTAKE-PIVVQVLRR 100

>pdb|3JXT|A Chain A, Crystal Structure Of The Third Pdz Domain Of Sap-102 In Complex With A Fluorogenic Peptide-Based Ligand Length = 104

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/66 (43%), Positives = 37/66 (56%), Gaps = 4/66 (6%)
Query: 586 GKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLE 645
           G  GLGF IVGG+D      GIF+  IL  G A   G L+ GD IL++NG    + TH +
Sbjct: 21  GSTGLGFNIVGGEDGE----GIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNATHEQ 76
Query: 646 AISLFK 651
           A +  K
Sbjct: 77  AAAALK 82

>pdb|1UM7|A Chain A, Solution Structure Of The Third Pdz Domain Of Synapse- Associated Protein 102 Length = 113

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/66 (43%), Positives = 37/66 (56%), Gaps = 4/66 (6%)
Query: 586 GKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLE 645
           G  GLGF IVGG+D      GIF+  IL  G A   G L+ GD IL++NG    + TH +
Sbjct: 24  GSTGLGFNIVGGEDGE----GIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNATHEQ 79
Query: 646 AISLFK 651
           A +  K
Sbjct: 80  AAAALK 85

>pdb|2HE2|A Chain A, Crystal Structure Of The 3rd Pdz Domain Of Human Discs Large Homologue 2, Dlg2 Length = 102

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/66 (42%), Positives = 37/66 (56%), Gaps = 4/66 (6%)
Query: 586 GKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLE 645
           G  GLGF IVGG+D      GIF+  IL  G A   G L+ GD+IL++NG      +H +
Sbjct: 12  GSTGLGFNIVGGEDGE----GIFVSFILAGGPADLSGELQRGDQILSVNGIDLRGASHEQ 67
Query: 646 AISLFK 651
           A +  K
Sbjct: 68  AAAALK 73

>pdb|1UJU|A Chain A, Solution Structure Of The Fourth Pdz Domain Of Human Scribble (Kiaa0147 Protein) Length = 111

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/96 (33%), Positives = 53/96 (55%), Gaps = 8/96 (8%)
Query: 579 IVFEKGPGKKGLGFTIVGGK----DSPRGAI--GIFIKSILDNGQAAEDGRLKEGDEILA 632
           +  +K PG++ LG +I GG      +PR     GIFI  +   G A  DGRL+ G  +L 
Sbjct: 13  LCIQKAPGER-LGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRLRVGLRLLE 71
Query: 633 INGQVCHDLTHLEAISLFKTIKNGSISLHICRRLKS 668
           +N Q    LTH EA+ L +++ + ++++ +C   +S
Sbjct: 72  VNQQSLLGLTHGEAVQLLRSVGD-TLTVLVCDGFES 106

>pdb|1I16|A Chain A, Structure Of Interleukin 16: Implications For Function, Nmr, 20 Structures Length = 130

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 34/102 (33%), Positives = 54/102 (52%), Gaps = 3/102 (2%)
Query: 571 SAICTFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEI 630
           +A  T  T+  EK     GLGF++ GGK S  G   + I  I     + +   ++ GDEI
Sbjct: 25  TAEATVCTVTLEKMSA--GLGFSLEGGKGSLHGDKPLTINRIFKGAASEQSETVQPGDEI 82
Query: 631 LAINGQVCHDLTHLEAISLFKTIKNGSISLHICRR-LKSKKT 671
           L + G     LT  EA ++ K + +G +++ I R+ L+SK+T
Sbjct: 83  LQLGGTAMQGLTRFEAWNIIKALPDGPVTIVIRRKSLQSKET 124

>pdb|1WHA|A Chain A, Solution Structure Of The Second Pdz Domain Of Human Scribble (Kiaa0147 Protein) Length = 105

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 33/85 (38%), Positives = 47/85 (55%), Gaps = 4/85 (4%)
Query: 587 KKGLGFTIVGGKDSP---RGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTH 643
           ++GLGF+I GGK S     G  GIF+  I + G A   G L+ GD +L+ING    +  H
Sbjct: 17  ERGLGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGDRVLSINGVDVTEARH 76
Query: 644 LEAISLFKTIKNGSISLHICRRLKS 668
             A+SL  T  + +I+L + R   S
Sbjct: 77  DHAVSLL-TAASPTIALLLEREAGS 100

>pdb|3PDZ|A Chain A, Solution Structure Of The Pdz2 Domain From Human Phosphatase Hptp1e Length = 96

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/73 (32%), Positives = 44/73 (60%), Gaps = 3/73 (4%)
Query: 590 LGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISL 649
           LG ++ GG ++     GI++K+++  G A  DGR+ +GD +LA+NG      TH +A+  
Sbjct: 18  LGISVTGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAV-- 75
Query: 650 FKTIKNGSISLHI 662
            +T++N    +H+
Sbjct: 76  -ETLRNTGQVVHL 87

>pdb|1D5G|A Chain A, Solution Structure Of The Pdz2 Domain From Human Phosphatase Hptp1e Complexed With A Peptide Length = 96

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/73 (32%), Positives = 44/73 (60%), Gaps = 3/73 (4%)
Query: 590 LGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISL 649
           LG ++ GG ++     GI++K+++  G A  DGR+ +GD +LA+NG      TH +A+  
Sbjct: 18  LGISVTGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAV-- 75
Query: 650 FKTIKNGSISLHI 662
            +T++N    +H+
Sbjct: 76  -ETLRNTGQVVHL 87

>pdb|2DJT|A Chain A, Solution Structures Of The Pdz Domain Of Human Unnamed Protein Product Length = 104

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 29/80 (36%), Positives = 44/80 (55%), Gaps = 4/80 (5%)
Query: 586 GKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLE 645
           G  G G T+ GG+D   G   + ++ +L +G A   GRL+ GD +L ING+    LTH +
Sbjct: 20  GYAGFGLTLGGGRDVA-GDTPLAVRGLLKDGPAQRCGRLEVGDLVLHINGESTQGLTHAQ 78
Query: 646 AISLFKTIKNGSISLHICRR 665
           A+   + I+ G   LH+  R
Sbjct: 79  AV---ERIRAGGPQLHLVIR 95

>pdb|1WG6|A Chain A, Solution Structure Of Pdz Domain In Protein Xp_110852 Length = 127

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 48/87 (55%), Gaps = 7/87 (8%)
Query: 586 GKKGLGFTIVGGKDSPRGA-IGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHL 644
           G  GLG ++ G K    G  +GIFIKSI+  G A +DGRL+  D+++A+NG+     ++ 
Sbjct: 35  GSAGLGVSLKGNKSRETGTDLGIFIKSIIHGGAAFKDGRLRMNDQLIAVNGETLLGKSNH 94
Query: 645 EAISLFKTIKN------GSISLHICRR 665
           EA+   +   +      G I L I RR
Sbjct: 95  EAMETLRRSMSMEGNIRGMIQLVILRR 121

>pdb|3AXA|A Chain A, Crystal Structure Of Afadin Pdz Domain In Complex With The C-Terminal Peptide From Nectin-3 Length = 106

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/79 (30%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 587 KKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEA 646
           + G+G +IV  K + +  +GI++KS++  G A  DGRL  GD++L+++G+    L+   A
Sbjct: 20  QNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERA 79
Query: 647 ISLFKTIKNGSISLHICRR 665
             L  T  +  ++L + ++
Sbjct: 80  AELM-TRTSSVVTLEVAKQ 97

>pdb|1XZ9|A Chain A, Structure Of Af-6 Pdz Domain Length = 101

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 24/79 (30%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 587 KKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEA 646
           + G+G +IV  K + +  +GI++KS++  G A  DGRL  GD++L+++G+    L+   A
Sbjct: 20  QNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERA 79
Query: 647 ISLFKTIKNGSISLHICRR 665
             L  T  +  ++L + ++
Sbjct: 80  AELM-TRTSSVVTLEVAKQ 97

>pdb|1T2M|A Chain A, Solution Structure Of The Pdz Domain Of Af-6 Length = 101

Iteration: 1
 Score = 50.1 bits (118), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 24/79 (30%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 587 KKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEA 646
           + G+G +IV  K + +  +GI++KS++  G A  DGRL  GD++L+++G+    L+   A
Sbjct: 14  QNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERA 73
Query: 647 ISLFKTIKNGSISLHICRR 665
             L  T  +  ++L + ++
Sbjct: 74  AELM-TRTSSVVTLEVAKQ 91

>pdb|2AIN|A Chain A, Solution Structure Of The Af-6 Pdz Domain Complexed With The C-Terminal Peptide From The Bcr Protein Length = 93

Iteration: 1
 Score = 49.7 bits (117), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 24/79 (30%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 587 KKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEA 646
           + G+G +IV  K + +  +GI++KS++  G A  DGRL  GD++L+++G+    L+   A
Sbjct: 14  QNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERA 73
Query: 647 ISLFKTIKNGSISLHICRR 665
             L  T  +  ++L + ++
Sbjct: 74  AELM-TRTSSVVTLEVAKQ 91

>pdb|1WI2|A Chain A, Solution Structure Of The Pdz Domain From Riken Cdna 2700099c19 Length = 104

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 49/84 (58%), Gaps = 7/84 (8%)
Query: 579 IVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVC 638
           +  +K PG + LGF I GGK S    +GIFI  ++ +  A   G L+EGD++LA+N    
Sbjct: 19  VTLKKPPGAQ-LGFNIRGGKAS---QLGIFISKVIPDSDAHRAG-LQEGDQVLAVNDVDF 73
Query: 639 HDLTHLEAISLFKTIKNGSISLHI 662
            D+ H +A+ + KT +   IS+ +
Sbjct: 74  QDIEHSKAVEILKTARE--ISMRV 95

>pdb|1OZI|A Chain A, The Alternatively Spliced Pdz2 Domain Of Ptp-Bl Length = 99

Iteration: 1
 Score = 49.3 bits (116), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 27/83 (32%), Positives = 47/83 (56%), Gaps = 6/83 (7%)
Query: 583 KGPGKKGLGFTIV---GGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCH 639
           K  G  G+  T++   GG ++     GI++K+I+  G A  DGR+ +GD +LA+NG    
Sbjct: 12  KTDGSLGISVTVLFDKGGVNTSVRHGGIYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLE 71
Query: 640 DLTHLEAISLFKTIKNGSISLHI 662
             TH +A+   +T++N    +H+
Sbjct: 72  GATHKQAV---ETLRNTGQVVHL 91

>pdb|1X6D|A Chain A, Solution Structures Of The Pdz Domain Of Human Interleukin- 16 Length = 119

Iteration: 1
 Score = 49.3 bits (116), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 51/90 (56%), Gaps = 3/90 (3%)
Query: 577 HTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQ 636
           H  +  K  G  GLGF++ GG D     I +    +  NG A+++G +++G+E+L+ING+
Sbjct: 17  HVTILHKEEGA-GLGFSLAGGADLENKVITV--HRVFPNGLASQEGTIQKGNEVLSINGK 73
Query: 637 VCHDLTHLEAISLFKTIKNGSISLHICRRL 666
                TH +A+++ +  +    ++ + R+L
Sbjct: 74  SLKGTTHHDALAILRQAREPRQAVIVTRKL 103

>pdb|1IHJ|A Chain A, Crystal Structure Of The N-Terminal Pdz Domain Of Inad In Complex With A Norpa C-Terminal Peptide Length = 98

Iteration: 1
 Score = 48.9 bits (115), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 34/78 (43%), Positives = 42/78 (53%), Gaps = 4/78 (5%)
Query: 577 HTIVFEKGPGKKGLGFTIVGG--KDSPR-GAIGIFIKSILDNGQAAEDGRLKEGDEILAI 633
           H +  +K  GKK  G  IV G  KDSP     GIFIK I+ +  A   GRLK GD IL++
Sbjct: 7   HMVTLDK-TGKKSFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSL 65
Query: 634 NGQVCHDLTHLEAISLFK 651
           NG+   + T    I L K
Sbjct: 66  NGKDVRNSTEQAVIDLIK 83

>pdb|2DLU|A Chain A, Solution Structure Of The Second Pdz Domain Of Human Inad- Like Protein Length = 111

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 6/92 (6%)
Query: 573 ICTFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILA 632
           +C  H    E      GLGF IVGGK S     G+ +++I+  G A  DGRL+ GD IL 
Sbjct: 11  VCWGHVEEVELINDGSGLGFGIVGGKTS-----GVVVRTIVPGGLADRDGRLQTGDHILK 65
Query: 633 INGQVCHDLTHLEAISLFKTIKNGSISLHICR 664
           I G     +T  +   + +   N S+ + + R
Sbjct: 66  IGGTNVQGMTSEQVAQVLRNCGN-SVRMLVAR 96

>pdb|2H2C|A Chain A, Crystal Structure Of Zo-1 Pdz1 Bound To A Phage-Derived Ligand (Wrrttwv) Length = 107

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/88 (34%), Positives = 46/88 (52%), Gaps = 7/88 (7%)
Query: 577 HTIVFEKGPGKKGLGFTIVGGKDSPR---GAIGIFIKSILDNGQAAEDGRLKEGDEILAI 633
           HT+   + PG  G G  I GG+D+P    G   I I  +L  G A  +G+L+E D +  +
Sbjct: 9   HTVTLHRAPGF-GFGIAISGGRDNPHFQSGETSIVISDVLKGGPA--EGQLQENDRVAMV 65
Query: 634 NGQVCHDLTHLEAI-SLFKTIKNGSISL 660
           NG    ++ H  A+  L K+ KN  I++
Sbjct: 66  NGVSMDNVEHAFAVQQLRKSGKNAKITI 93

>pdb|3CBX|A Chain A, The Dvl2 Pdz Domain In Complex With The C1 Inhibitory Peptide Length = 105

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/77 (35%), Positives = 46/77 (59%), Gaps = 3/77 (3%)
Query: 590 LGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISL 649
           LG +IVG + + RG  GI+I SI+  G  A DGR++ GD +L +N     ++++ +A+ +
Sbjct: 19  LGISIVG-QSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRV 77
Query: 650 FKTI--KNGSISLHICR 664
            + I  K G I L + +
Sbjct: 78  LRDIVHKPGPIVLTVAK 94

>pdb|2H2B|A Chain A, Crystal Structure Of Zo-1 Pdz1 Bound To A Phage-derived Ligand (wrrttyl) Length = 107

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/88 (34%), Positives = 46/88 (52%), Gaps = 7/88 (7%)
Query: 577 HTIVFEKGPGKKGLGFTIVGGKDSPR---GAIGIFIKSILDNGQAAEDGRLKEGDEILAI 633
           HT+   + PG  G G  I GG+D+P    G   I I  +L  G A  +G+L+E D +  +
Sbjct: 9   HTVTLHRAPGF-GFGIAISGGRDNPHFQSGETSIVISDVLKGGPA--EGQLQENDRVAMV 65
Query: 634 NGQVCHDLTHLEAI-SLFKTIKNGSISL 660
           NG    ++ H  A+  L K+ KN  I++
Sbjct: 66  NGVSMDNVEHAFAVQQLRKSGKNAKITI 93

>pdb|3CBY|A Chain A, The Dvl2 Pdz Domain In Complex With The N1 Inhibitory Peptide Length = 108

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/77 (35%), Positives = 46/77 (59%), Gaps = 3/77 (3%)
Query: 590 LGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISL 649
           LG +IVG + + RG  GI+I SI+  G  A DGR++ GD +L +N     ++++ +A+ +
Sbjct: 19  LGISIVG-QSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRV 77
Query: 650 FKTI--KNGSISLHICR 664
            + I  K G I L + +
Sbjct: 78  LRDIVHKPGPIVLTVAK 94

>pdb|3CC0|A Chain A, The Dvl2 Pdz Domain In Complex With The N3 Inhibitory Peptide Length = 108

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/77 (35%), Positives = 46/77 (59%), Gaps = 3/77 (3%)
Query: 590 LGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISL 649
           LG +IVG + + RG  GI+I SI+  G  A DGR++ GD +L +N     ++++ +A+ +
Sbjct: 19  LGISIVG-QSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRV 77
Query: 650 FKTI--KNGSISLHICR 664
            + I  K G I L + +
Sbjct: 78  LRDIVHKPGPIVLTVAK 94

>pdb|1MC7|A Chain A, Solution Structure Of Mdvl1 Pdz Domain Length = 95

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 27/77 (35%), Positives = 47/77 (61%), Gaps = 3/77 (3%)
Query: 590 LGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISL 649
           LG +IVG + + RG  GI+I SI+  G  A DGR++ GD +L +N     ++++ +A+ +
Sbjct: 12  LGISIVG-QSNDRGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDVNFENMSNDDAVRV 70
Query: 650 FKTI--KNGSISLHICR 664
            + I  + G ISL + +
Sbjct: 71  LREIVSQTGPISLTVAK 87

>pdb|3CBZ|A Chain A, The Dvl2 Pdz Domain In Complex With The N2 Inhibitory Peptide Length = 108

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 27/77 (35%), Positives = 46/77 (59%), Gaps = 3/77 (3%)
Query: 590 LGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISL 649
           LG +IVG + + RG  GI+I SI+  G  A DGR++ GD +L +N     ++++ +A+ +
Sbjct: 19  LGISIVG-QSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRV 77
Query: 650 FKTI--KNGSISLHICR 664
            + I  K G I L + +
Sbjct: 78  LRDIVHKPGPIVLTVAK 94

>pdb|2KAW|A Chain A, Nmr Structure Of The Mdvl1 Pdz Domain In Complex With Its Inhibitor Length = 90

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 27/77 (35%), Positives = 47/77 (61%), Gaps = 3/77 (3%)
Query: 590 LGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISL 649
           LG +IVG + + RG  GI+I SI+  G  A DGR++ GD +L +N     ++++ +A+ +
Sbjct: 15  LGISIVG-QSNDRGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDVNFENMSNDDAVRV 73
Query: 650 FKTI--KNGSISLHICR 664
            + I  + G ISL + +
Sbjct: 74  LREIVSQTGPISLTVAK 90

>pdb|1UJD|A Chain A, Solution Structure Of Rsgi Ruh-003, A Pdz Domain Of Hypothetical Kiaa0559 Protein From Human Cdna Length = 117

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 33/80 (41%), Positives = 41/80 (51%), Gaps = 5/80 (6%)
Query: 589 GLGFTIVGGKDSP--RGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEA 646
           GLG  IVGGK+ P   G IG +I  IL  G A + G+L EG ++L  NG      T+ E 
Sbjct: 31  GLGIRIVGGKEIPGHSGEIGAYIAKILPGGSAEQTGKLMEGMQVLEWNGIPLTSKTYEEV 90
Query: 647 ISLFKTIKNGSISLHICRRL 666
            S+   I   S    IC RL
Sbjct: 91  QSI---ISQQSGEAEICVRL 107

>pdb|2RRM|A Chain A, Interplay Between Phosphatidyl-Inositol-Phosphates And Claudins Upon Binding To The 1st Pdz Domain Of Zonula Occludens 1 Length = 100

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 30/88 (34%), Positives = 46/88 (52%), Gaps = 7/88 (7%)
Query: 577 HTIVFEKGPGKKGLGFTIVGGKDSPR---GAIGIFIKSILDNGQAAEDGRLKEGDEILAI 633
           HT+   + PG  G G  I GG+D+P    G   I I  +L  G A  +G+L+E D +  +
Sbjct: 12  HTVTLHRAPGF-GFGIAISGGRDNPHFQSGETSIVISDVLKGGPA--EGQLQENDRVAMV 68
Query: 634 NGQVCHDLTHLEAI-SLFKTIKNGSISL 660
           NG    ++ H  A+  L K+ KN  I++
Sbjct: 69  NGVSMDNVEHAFAVQQLRKSGKNAKITI 96

>pdb|2H3M|A Chain A, Crystal Structure Of Zo-1 Pdz1 Length = 97

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 30/88 (34%), Positives = 46/88 (52%), Gaps = 7/88 (7%)
Query: 577 HTIVFEKGPGKKGLGFTIVGGKDSPR---GAIGIFIKSILDNGQAAEDGRLKEGDEILAI 633
           HT+   + PG  G G  I GG+D+P    G   I I  +L  G A  +G+L+E D +  +
Sbjct: 9   HTVTLHRAPGF-GFGIAISGGRDNPHFQSGETSIVISDVLKGGPA--EGQLQENDRVAMV 65
Query: 634 NGQVCHDLTHLEAI-SLFKTIKNGSISL 660
           NG    ++ H  A+  L K+ KN  I++
Sbjct: 66  NGVSMDNVEHAFAVQQLRKSGKNAKITI 93

>pdb|2REY|A Chain A, Crystal Structure Of The Pdz Domain Of Human Dishevelled 2 (Homologous To Drosophila Dsh) Length = 100

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 27/77 (35%), Positives = 46/77 (59%), Gaps = 3/77 (3%)
Query: 590 LGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISL 649
           LG +IVG + + RG  GI+I SI+  G  A DGR++ GD +L +N     ++++ +A+ +
Sbjct: 19  LGISIVG-QSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRV 77
Query: 650 FKTI--KNGSISLHICR 664
            + I  K G I L + +
Sbjct: 78  LRDIVHKPGPIVLTVAK 94

>pdb|3K1R|A Chain A, Structure Of Harmonin Npdz1 In Complex With The Sam-Pbm Of Sans Length = 192

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 31/76 (40%), Positives = 43/76 (56%), Gaps = 5/76 (6%)
Query: 588 KGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAI 647
           +GLG ++ GG +      G+FI  ++  GQA   G L+ GDEI+ ING      TH E I
Sbjct: 96  EGLGLSVRGGLEF---GCGLFISHLIKGGQADSVG-LQVGDEIVRINGYSISSCTHEEVI 151
Query: 648 SLFKTIKNGSISL-HI 662
           +L +T K  SI + HI
Sbjct: 152 NLIRTEKTVSIKVRHI 167

>pdb|2I0I|A Chain A, X-Ray Crystal Structure Of Sap97 Pdz3 Bound To The C- Terminal Peptide Of Hpv18 E6 Length = 85

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 24/49 (48%), Positives = 30/49 (61%), Gaps = 4/49 (8%)
Query: 586 GKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAIN 634
           G  GLGF IVGG+D      GIFI  IL  G A   G L++GD I+++N
Sbjct: 13  GSTGLGFNIVGGEDGE----GIFISFILAGGPADLSGELRKGDRIISVN 57

>pdb|2CSJ|A Chain A, Solution Structure Of N-Terminal Pdz Domain From Mouse Tjp2 Length = 117

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 8/92 (8%)
Query: 577 HTIVFEKGPGKKGLGFTIVGGKDSPR---GAIGIFIKSILDNGQAAEDGRLKEGDEILAI 633
           +T+  +K   K+G G  + GG+D+P    G   I I  +L  G A  DG L+E D ++ +
Sbjct: 16  YTVTLQKD-SKRGFGIAVSGGRDNPHFENGETSIVISDVLPGGPA--DGLLQENDRVVMV 72
Query: 634 NGQVCHDLTHLEAISLFKTIKNGSISLHICRR 665
           NG    D+ H  A+   +  K+G I+  + +R
Sbjct: 73  NGTPMEDVLHSFAVQQLR--KSGKIAAIVVKR 102

>pdb|1U3B|A Chain A, Auto-Inhibition Mechanism Of X11sMINTS FAMILY SCAFFOLD Proteins Revealed By The Closed Conformation Of The Tandem Pdz Domains Length = 185

Iteration: 1
 Score = 46.2 bits (108), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 20/43 (46%), Positives = 32/43 (74%)
Query: 421 VVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSII 463
           ++A+++ GG AEK G L +GD+I+S+NG  L GL ++  +SII
Sbjct: 32  IIANMMHGGPAEKSGKLNIGDQIMSINGTSLVGLPLSTCQSII 74

>pdb|2FCF|A Chain A, The Crystal Structure Of The 7th Pdz Domain Of Mpdz (Mupp-1) Length = 103

Iteration: 1
 Score = 46.2 bits (108), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 6/74 (8%)
Query: 588 KGLGFTIVGGKDS----PRGAI--GIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDL 641
           K LG +IVGG+        G +  GIFIK +L++  A ++G LK GD I+ ++G    D 
Sbjct: 16  KSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDA 75
Query: 642 THLEAISLFKTIKN 655
           +H +A+   +   N
Sbjct: 76  SHEQAVEAIRKAGN 89

>pdb|2IWQ|A Chain A, 7th Pdz Domain Of Multiple Pdz Domain Protein Mpdz Length = 123

Iteration: 1
 Score = 46.2 bits (108), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 6/74 (8%)
Query: 588 KGLGFTIVGGKDS----PRGAI--GIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDL 641
           K LG +IVGG+        G +  GIFIK +L++  A ++G LK GD I+ ++G    D 
Sbjct: 36  KSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDA 95
Query: 642 THLEAISLFKTIKN 655
           +H +A+   +   N
Sbjct: 96  SHEQAVEAIRKAGN 109

>pdb|2DKR|A Chain A, Solution Structure Of The Pdz Domain From Human Lin-7 Homolog B Length = 93

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 29/75 (38%), Positives = 43/75 (57%), Gaps = 8/75 (10%)
Query: 588 KGLGFTIVGGKD--SPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLE 645
           +GLGF I+GGK+  SP     I+I  ++  G A   G LK GD++L++NG       H +
Sbjct: 16  EGLGFNIMGGKEQNSP-----IYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEGEQHEK 70
Query: 646 AISLFKTIKNGSISL 660
           A+ L K  + GS+ L
Sbjct: 71  AVELLKAAQ-GSVKL 84

>pdb|1UF1|A Chain A, Solution Structure Of The Second Pdz Domain Of Human Kiaa1526 Protein Length = 128

Iteration: 1
 Score = 45.8 bits (107), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 29/84 (34%), Positives = 47/84 (55%), Gaps = 4/84 (4%)
Query: 588 KGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAI 647
           + LG TI GG +     +GI+I  + D G  AE   LK GD+IL +NG+   ++ H EA+
Sbjct: 32  RSLGLTIRGGAEY---GLGIYITGV-DPGSEAEGSGLKVGDQILEVNGRSFLNILHDEAV 87
Query: 648 SLFKTIKNGSISLHICRRLKSKKT 671
            L K+ ++  +++    RL   +T
Sbjct: 88  RLLKSSRHLILTVKDVGRLPHART 111

>pdb|2VWR|A Chain A, Crystal Structure Of The Second Pdz Domain Of Numb-Binding Protein 2 Length = 95

Iteration: 1
 Score = 45.8 bits (107), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 26/65 (40%), Positives = 35/65 (53%), Gaps = 7/65 (10%)
Query: 579 IVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVC 638
           +   K    + LG  +V   D P    G+FI  +L+ G AA+DGRL   D +LAING   
Sbjct: 7   VALHKRDSGEQLGIKLVRRTDEP----GVFILDLLEGGLAAQDGRLSSNDRVLAING--- 59
Query: 639 HDLTH 643
           HDL +
Sbjct: 60  HDLKY 64

>pdb|1PDR|A Chain A, Crystal Structure Of The Third Pdz Domain From The Human Homolog Of Discs Large Protein Length = 99

Iteration: 1
 Score = 45.4 bits (106), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 24/49 (48%), Positives = 30/49 (61%), Gaps = 4/49 (8%)
Query: 586 GKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAIN 634
           G  GLGF IVGG+D      GIFI  IL  G A   G L++GD I+++N
Sbjct: 16  GSTGLGFNIVGGEDGE----GIFISFILAGGPADLSGELRKGDRIISVN 60

>pdb|1UEP|A Chain A, Solution Structure Of The Third Pdz Domain Of Human Atrophin-1 Interacting Protein 1 (Kiaa0705 Protein) Length = 103

Iteration: 1
 Score = 45.4 bits (106), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 29/83 (34%), Positives = 44/83 (53%), Gaps = 4/83 (4%)
Query: 587 KKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEA 646
           + G GF I+GG D P     I I +++  G A  DGRL  GDE++ ++G      TH   
Sbjct: 19  ESGFGFRILGG-DEP--GQPILIGAVIAMGSADRDGRLHPGDELVYVDGIPVAGKTHRYV 75
Query: 647 ISLF-KTIKNGSISLHICRRLKS 668
           I L     +NG ++L + R++ S
Sbjct: 76  IDLMHHAARNGQVNLTVRRKVLS 98

>pdb|1U38|A Chain A, Auto-Inhibition Mechanism Of X11sMINTS FAMILY SCAFFOLD Proteins Revealed By The Closed Conformation Of The Tandem Pdz Domains Length = 89

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/43 (46%), Positives = 32/43 (74%)
Query: 421 VVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSII 463
           ++A+++ GG AEK G L +GD+I+S+NG  L GL ++  +SII
Sbjct: 32  IIANMMHGGPAEKSGKLNIGDQIMSINGTSLVGLPLSTCQSII 74

>pdb|1WH1|A Chain A, Solution Structure Of The Fourth Pdz Domain Of Kiaa1095 Protein Length = 124

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/60 (43%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Query: 605 IGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKNGSISLHICR 664
           IGI+I  I  N  AA+DGR++EGD I+ ING         EA++L  + +N + SL I R
Sbjct: 48  IGIYISEIDPNSIAAKDGRIREGDRIIQINGIEVQ--NREEAVALLTSEENKNFSLLIAR 105

>pdb|2D92|A Chain A, Solution Structure Of The Fifth Pdz Domain Of Inad-Like Protein Length = 108

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/79 (36%), Positives = 47/79 (59%), Gaps = 5/79 (6%)
Query: 588 KGLGFTIVGGKD--SPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHL- 644
           KGLGF+I+  +D   P  ++ I I+S++ +G A   G L  GD ++++N + C D T L 
Sbjct: 26  KGLGFSILDYQDPLDPTRSV-IVIRSLVADGVAERSGGLLPGDRLVSVN-EYCLDNTSLA 83
Query: 645 EAISLFKTIKNGSISLHIC 663
           EA+ + K +  G + L IC
Sbjct: 84  EAVEILKAVPPGLVHLGIC 102

>pdb|1Q7X|A Chain A, Solution Structure Of The Alternatively Spliced Pdz2 Domain (Pdz2b) Of Ptp-Bas (Hptp1e) Length = 108

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/85 (30%), Positives = 48/85 (56%), Gaps = 15/85 (17%)
Query: 578 TIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQV 637
           T++F+KG    G+  ++  G        GI++K+++  G A  DGR+ +GD +LA+NG  
Sbjct: 27  TVLFDKG----GVNTSVRHG--------GIYVKAVIPQGAAESDGRIHKGDRVLAVNGVS 74
Query: 638 CHDLTHLEAISLFKTIKNGSISLHI 662
               TH +A+   +T++N    +H+
Sbjct: 75  LEGATHKQAV---ETLRNTGQVVHL 96

>pdb|1UEZ|A Chain A, Solution Structure Of The First Pdz Domain Of Human Kiaa1526 Protein Length = 101

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/88 (30%), Positives = 48/88 (54%), Gaps = 4/88 (4%)
Query: 579 IVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVC 638
           +   +    +GLGF+I GG +     +GI++ S+++ G  AE   L+ GD+IL +N +  
Sbjct: 12  VSLRRAKAHEGLGFSIRGGSEH---GVGIYV-SLVEPGSLAEKEGLRVGDQILRVNDKSL 67
Query: 639 HDLTHLEAISLFKTIKNGSISLHICRRL 666
             +TH EA+   K  K   +S++   R+
Sbjct: 68  ARVTHAEAVKALKGSKKLVLSVYSAGRI 95

>pdb|2FN5|A Chain A, Nmr Structure Of The Neurabin Pdz Domain (502-594) Length = 94

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/81 (30%), Positives = 46/81 (56%), Gaps = 4/81 (4%)
Query: 587 KKGLGFTIVG---GKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTH 643
           + GLG +I+G   G D+    +GIF+K++ + G A  DGR++  D+I+ ++G     +T 
Sbjct: 14  EDGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQ 73
Query: 644 LEAISLFKTIKNGSISLHICR 664
             A ++ +  K G++   I R
Sbjct: 74  NFAATVLRNTK-GNVRFVIGR 93

>pdb|2LC6|A Chain A, Solution Structure Of Par-6 Q144cL164C Length = 128

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 5/90 (5%)
Query: 386 EGQTMVRVNRRDFNEELGIYI-----AKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELG 440
           E    VR+ +   ++ LG YI      ++  S      G  ++ +V GGLAE  G L + 
Sbjct: 29  ETHRRVRLCKHGSDKPLGFYIRDGTSVRVTASGLEKQPGIFISRLVPGGLAESTGLLAVN 88
Query: 441 DEIISVNGQRLRGLTMTQAKSIISSGPLNM 470
           DE+I VNG  + G T+ Q   ++ +   N+
Sbjct: 89  DEVIEVNGIEVAGKTLDQVTDMMVANSSNL 118

>pdb|1RZX|A Chain A, Crystal Structure Of A Par-6 Pdz-Peptide Complex Length = 98

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 5/90 (5%)
Query: 386 EGQTMVRVNRRDFNEELGIYI-----AKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELG 440
           E    VR+ +   ++ LG YI      ++  S      G  ++ +V GGLAE  G L + 
Sbjct: 1   ETHRRVRLLKHGSDKPLGFYIRDGTSVRVTASGLEKQPGIFISRLVPGGLAESTGLLAVN 60
Query: 441 DEIISVNGQRLRGLTMTQAKSIISSGPLNM 470
           DE+I VNG  + G T+ Q   ++ +   N+
Sbjct: 61  DEVIEVNGIEVAGKTLDQVTDMMVANSSNL 90

>pdb|1RY4|A Chain A, Nmr Structure Of The Crib-Pdz Module Of Par-6 Length = 128

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 5/90 (5%)
Query: 386 EGQTMVRVNRRDFNEELGIYI-----AKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELG 440
           E    VR+ +   ++ LG YI      ++  S      G  ++ +V GGLAE  G L + 
Sbjct: 29  ETHRRVRLLKHGSDKPLGFYIRDGTSVRVTASGLEKQPGIFISRLVPGGLAESTGLLAVN 88
Query: 441 DEIISVNGQRLRGLTMTQAKSIISSGPLNM 470
           DE+I VNG  + G T+ Q   ++ +   N+
Sbjct: 89  DEVIEVNGIEVAGKTLDQVTDMMVANSSNL 118

>pdb|1X8S|A Chain A, Structure Of The Par-6 Pdz Domain With A Pals1 Internal Ligand Length = 102

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 5/90 (5%)
Query: 386 EGQTMVRVNRRDFNEELGIYI-----AKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELG 440
           E    VR+ +   ++ LG YI      ++  S      G  ++ +V GGLAE  G L + 
Sbjct: 3   ETHRRVRLLKHGSDKPLGFYIRDGTSVRVTASGLEKQPGIFISRLVPGGLAESTGLLAVN 62
Query: 441 DEIISVNGQRLRGLTMTQAKSIISSGPLNM 470
           DE+I VNG  + G T+ Q   ++ +   N+
Sbjct: 63  DEVIEVNGIEVAGKTLDQVTDMMVANSSNL 92

>pdb|1X45|A Chain A, Solution Structure Of The First Pdz Domain Of Amyloid Beta A4 Precursor Protein-Binding Family A, Member 1 Length = 98

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 32/44 (72%)
Query: 420 FVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSII 463
            ++A+++ GG AEK G L +GD+I+S+NG  L GL ++  +SII
Sbjct: 35  VIIANMMHGGPAEKSGKLNIGDQIMSINGTSLVGLPLSTCQSII 78

>pdb|1L6O|A Chain A, Xenopus Dishevelled Pdz Domain Length = 95

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/77 (35%), Positives = 44/77 (57%), Gaps = 3/77 (3%)
Query: 590 LGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISL 649
           LG +IVG + + RG  GI+I SI   G  A DGR++ GD +L +N     + ++ +A+ +
Sbjct: 15  LGISIVG-QSNERGDGGIYIGSIXKGGAVAADGRIEPGDXLLQVNDINFENXSNDDAVRV 73
Query: 650 FKTI--KNGSISLHICR 664
            + I  K G I L + +
Sbjct: 74  LRDIVHKPGPIVLTVAK 90

>pdb|1WF8|A Chain A, Solution Structure Of The Pdz Domain Of SpinophilinNEURABINII PROTEIN Length = 107

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 26/85 (30%), Positives = 47/85 (55%), Gaps = 4/85 (4%)
Query: 587 KKGLGFTIVG---GKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTH 643
           + GLG +I+G   G D+    +GIF+K++ + G A  DGR++  D+I+ ++G     +T 
Sbjct: 19  EDGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQ 78
Query: 644 LEAISLFKTIKNGSISLHICRRLKS 668
             A ++ +  K G++   I R   S
Sbjct: 79  NFAATVLRNTK-GNVRFVIGREKPS 102

>pdb|2F0A|A Chain A, Crystal Structure Of Monomeric Uncomplexed Form Of Xenopus Dishevelled Pdz Domain Length = 98

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/77 (35%), Positives = 44/77 (57%), Gaps = 3/77 (3%)
Query: 590 LGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISL 649
           LG +IVG + + RG  GI+I SI   G  A DGR++ GD +L +N     + ++ +A+ +
Sbjct: 15  LGISIVG-QSNERGDGGIYIGSIXKGGAVAADGRIEPGDXLLQVNDINFENXSNDDAVRV 73
Query: 650 FKTI--KNGSISLHICR 664
            + I  K G I L + +
Sbjct: 74  LRDIVHKPGPIVLTVAK 90

>pdb|3FY5|A Chain A, Dishevelled Pdz Domain Homodimer Length = 91

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/77 (35%), Positives = 44/77 (57%), Gaps = 3/77 (3%)
Query: 590 LGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISL 649
           LG +IVG + + RG  GI+I SI   G  A DGR++ GD +L +N     + ++ +A+ +
Sbjct: 13  LGISIVG-QSNERGDGGIYIGSIXKGGAVAADGRIEPGDXLLQVNDINFENXSNDDAVRV 71
Query: 650 FKTI--KNGSISLHICR 664
            + I  K G I L + +
Sbjct: 72  LRDIVHKPGPIVLTVAK 88

>pdb|3B76|A Chain A, Crystal Structure Of The Third Pdz Domain Of Human Ligand-of-numb Protein-x (lnx1) In Complex With The C-terminal Peptide From The Coxsackievirus And Adenovirus Receptor Length = 118

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 23/70 (32%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Query: 582 EKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDL 641
           +K PG+  LG T+ GG       + I++ S+   G  + DGR+K GD +L ++G    ++
Sbjct: 31  QKDPGES-LGMTVAGGASHREWDLPIYVISVEPGGVISRDGRIKTGDILLNVDGVELTEV 89
Query: 642 THLEAISLFK 651
           +  EA++L K
Sbjct: 90  SRSEAVALLK 99

>pdb|3R0H|A Chain A, Structure Of Inad Pdz45 In Complex With Ng2 Peptide Length = 206

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 34/102 (33%), Positives = 48/102 (47%), Gaps = 4/102 (3%)
Query: 566 PRRPRSA-ICTFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRL 624
           P+ P +A I     I+ E    KK +G  + GGK++     G  I  +   GQ A D RL
Sbjct: 6   PQEPATAEIKPNKKILIELKVEKKPMGVIVCGGKNN-HVTTGCVITHVYPEGQVAADKRL 64
Query: 625 KEGDEILAINGQVCH--DLTHLEAISLFKTIKNGSISLHICR 664
           K  D I  ING   H   +T L+   LF T    +++L + R
Sbjct: 65  KIFDHICDINGTPIHVGSMTTLKVHQLFHTTYEKAVTLTVFR 106

>pdb|1V6B|A Chain A, Solution Structure Of The Third Pdz Domain Of Mouse Harmonin Length = 118

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Query: 590 LGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEA 646
           L   + GG DSP G +   + ++ + G A   G + +GDEI+AING++  D T  EA
Sbjct: 30  LDLALEGGVDSPVGKV--VVSAVYEGGAAERHGGVVKGDEIMAINGKIVTDYTLAEA 84

>pdb|2IWN|A Chain A, 3rd Pdz Domain Of Multiple Pdz Domain Protein Mpdz (Casp Target) Length = 97

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 588 KGLGFTIVGG-KDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEA 646
           +GLG TI G   D      GIF+KSI  +     DGR++ GD+I+A++G      T+ +A
Sbjct: 15  QGLGITIAGYIGDKKLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQA 74
Query: 647 ISLFK 651
           + + +
Sbjct: 75  VEVLR 79

>pdb|2G5M|B Chain B, Spinophilin Pdz Domain Length = 113

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 25/80 (31%), Positives = 43/80 (53%), Gaps = 4/80 (5%)
Query: 588 KGLGFTIVG---GKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHL 644
           +GLG +I+G   G D     +GIF+K++ + G A  DGR++  D ++ ++G     +T  
Sbjct: 15  EGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQS 74
Query: 645 EAISLFKTIKNGSISLHICR 664
            A S+ +  K G +   I R
Sbjct: 75  FAASVLRNTK-GRVRFMIGR 93

>pdb|3HVQ|C Chain C, Crystal Structure Of A Complex Between Protein Phosphatase 1 Alpha (Pp1) And The Pp1 Binding And Pdz Domains Of Neurabin Length = 170

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 25/81 (30%), Positives = 46/81 (56%), Gaps = 4/81 (4%)
Query: 587 KKGLGFTIVG---GKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTH 643
           + GLG +I+G   G D+    +GIF+K++ + G A  DGR++  D+I+ ++G     +T 
Sbjct: 90  EDGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQ 149
Query: 644 LEAISLFKTIKNGSISLHICR 664
             A ++ +  K G++   I R
Sbjct: 150 NFAATVLRNTK-GNVRFVIGR 169

>pdb|3HPM|A Chain A, Oxidized Dimeric Pick1 Pdz C46g Mutant In Complex With The C Tail Peptide Of Glur2 Length = 111

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 4/72 (5%)
Query: 590 LGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISL 649
           +G +I GG        G++I  + DN  AA DG +  GDEI  +NG+     T +E   +
Sbjct: 19  IGISIGGGAQY---CPGLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKM 75
Query: 650 FKTIKNGSISLH 661
            + +K G +++H
Sbjct: 76  IQEVK-GEVTIH 86

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	671
1i16_A	130	Interleukin 16, LCF; cytokine, lymphocyte chemoatt	1e-34
1i16_A	130	Interleukin 16, LCF; cytokine, lymphocyte chemoatt	1e-12
2fne_A	117	Multiple PDZ domain protein; structural protein, s	8e-34
2fne_A	117	Multiple PDZ domain protein; structural protein, s	2e-12
2koj_A	111	Partitioning defective 3 homolog; PDZ domain, stru	1e-33
2koj_A	111	Partitioning defective 3 homolog; PDZ domain, stru	6e-11
2kom_A	121	Partitioning defective 3 homolog; PAR-3B, PDZ doma	2e-33
2kom_A	121	Partitioning defective 3 homolog; PAR-3B, PDZ doma	6e-11
2iwo_A	120	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	6e-33
2iwo_A	120	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	4e-12
1d5g_A	96	Human phosphatase HPTP1E; protein-peptide complex,	7e-33
1d5g_A	96	Human phosphatase HPTP1E; protein-peptide complex,	6e-13
2o2t_A	117	Multiple PDZ domain protein; structural protein, s	2e-32
2o2t_A	117	Multiple PDZ domain protein; structural protein, s	2e-12
1um1_A	110	KIAA1849 protein, RSGI RUH-007; PDZ domain, human	2e-32
1um1_A	110	KIAA1849 protein, RSGI RUH-007; PDZ domain, human	9e-12
3b76_A	118	E3 ubiquitin-protein ligase LNX; PDZ, bound ligand	6e-32
3b76_A	118	E3 ubiquitin-protein ligase LNX; PDZ, bound ligand	6e-13
2kpk_A	129	Membrane-associated guanylate kinase, WW and PDZ c	2e-31
2kpk_A	129	Membrane-associated guanylate kinase, WW and PDZ c	3e-09
3axa_A	106	Afadin, nectin-3, protein AF-6; PDZ domain, fusion	4e-31
3axa_A	106	Afadin, nectin-3, protein AF-6; PDZ domain, fusion	2e-12
2d92_A	108	INAD-like protein; PDZ domain, inadl protein, hina	5e-31
2d92_A	108	INAD-like protein; PDZ domain, inadl protein, hina	4e-12
2jre_A	108	C60-1 PDZ domain peptide; de novo protein; NMR {Sy	7e-31
2jre_A	108	C60-1 PDZ domain peptide; de novo protein; NMR {Sy	6e-12
2db5_A	128	INAD-like protein; PDZ domain, hinadl, PALS1- asso	7e-31
2db5_A	128	INAD-like protein; PDZ domain, hinadl, PALS1- asso	6e-11
1ueq_A	123	Membrane associated guanylate kinase inverted-2 (M	1e-30
1ueq_A	123	Membrane associated guanylate kinase inverted-2 (M	2e-09
2daz_A	124	INAD-like protein; PDZ domain, inadl protein, hina	1e-30
2daz_A	124	INAD-like protein; PDZ domain, inadl protein, hina	4e-12
2jik_A	101	Synaptojanin-2 binding protein; transmembrane, out	3e-30
2jik_A	101	Synaptojanin-2 binding protein; transmembrane, out	1e-09
1uju_A	111	Scribble; PDZ domain, cellular signaling, structur	4e-30
1uju_A	111	Scribble; PDZ domain, cellular signaling, structur	1e-12
2fe5_A	94	Presynaptic protein SAP102; PDZ domain, DLG3, huma	4e-30
2fe5_A	94	Presynaptic protein SAP102; PDZ domain, DLG3, huma	2e-10
2i1n_A	102	Discs, large homolog 3; DLG3, PDZ, PDZ domain, sig	4e-30
2i1n_A	102	Discs, large homolog 3; DLG3, PDZ, PDZ domain, sig	5e-10
2byg_A	117	Channel associated protein of synapse-110; DLG2, P	8e-30
2byg_A	117	Channel associated protein of synapse-110; DLG2, P	2e-10
2awx_A	105	Synapse associated protein 97; membrane protein, s	9e-30
2awx_A	105	Synapse associated protein 97; membrane protein, s	1e-10
2i04_A	85	Membrane-associated guanylate kinase, WW and PDZ d	9e-30
2i04_A	85	Membrane-associated guanylate kinase, WW and PDZ d	2e-10
2eno_A	120	Synaptojanin-2-binding protein; mitochondrial oute	1e-29
2eno_A	120	Synaptojanin-2-binding protein; mitochondrial oute	2e-09
1wf8_A	107	Neurabin-I; PDZ domain, structural genomics, NPPSF	4e-29
1wf8_A	107	Neurabin-I; PDZ domain, structural genomics, NPPSF	6e-11
1wg6_A	127	Hypothetical protein (riken cDNA 2810455B10); stru	4e-29
1wg6_A	127	Hypothetical protein (riken cDNA 2810455B10); stru	5e-12
2djt_A	104	Unnamed protein product; PDZ domain, structural ge	5e-29
2djt_A	104	Unnamed protein product; PDZ domain, structural ge	2e-10
3cbz_A	108	Dishevelled-2; PDZ domain, phage derived high affi	7e-29
3cbz_A	108	Dishevelled-2; PDZ domain, phage derived high affi	1e-09
1uhp_A	107	Hypothetical protein KIAA1095; PDZ domain, semapho	2e-28
1uhp_A	107	Hypothetical protein KIAA1095; PDZ domain, semapho	9e-11
2g5m_B	113	Neurabin-2; spinophilin, PDZ domain, CNS, synaptic	2e-28
2g5m_B	113	Neurabin-2; spinophilin, PDZ domain, CNS, synaptic	1e-11
2vwr_A	95	Ligand of NUMB protein X 2; protein-binding, metal	2e-28
2vwr_A	95	Ligand of NUMB protein X 2; protein-binding, metal	7e-13
1uep_A	103	Membrane associated guanylate kinase inverted-2 (M	2e-28
1uep_A	103	Membrane associated guanylate kinase inverted-2 (M	2e-10
1q7x_A	108	PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, str	3e-28
1q7x_A	108	PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, str	3e-11
2qg1_A	92	Multiple PDZ domain protein; MPDZ, MUPP1, structur	3e-28
2qg1_A	92	Multiple PDZ domain protein; MPDZ, MUPP1, structur	7e-12
2opg_A	98	Multiple PDZ domain protein; structural protein, s	3e-28
2opg_A	98	Multiple PDZ domain protein; structural protein, s	7e-12
2iwn_A	97	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	3e-28
2iwn_A	97	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	3e-13
1wha_A	105	KIAA0147 protein, scribble; PDZ domain, cellular s	4e-28
1wha_A	105	KIAA0147 protein, scribble; PDZ domain, cellular s	3e-11
1x6d_A	119	Interleukin-16; PDZ domain, lymphocyte chemoattrac	4e-28
1x6d_A	119	Interleukin-16; PDZ domain, lymphocyte chemoattrac	1e-13
1wfv_A	103	Membrane associated guanylate kinase inverted-2; a	4e-28
1wfv_A	103	Membrane associated guanylate kinase inverted-2; a	1e-10
2q9v_A	90	Membrane-associated guanylate kinase, WW and PDZ c	5e-28
2q9v_A	90	Membrane-associated guanylate kinase, WW and PDZ c	2e-10
1wfg_A	131	Regulating synaptic membrane exocytosis protein 2;	8e-28
1wfg_A	131	Regulating synaptic membrane exocytosis protein 2;	6e-13
1ujd_A	117	KIAA0559 protein; PDZ domain, structural genomics,	2e-27
1ujd_A	117	KIAA0559 protein; PDZ domain, structural genomics,	5e-12
1wi4_A	109	Synip, syntaxin binding protein 4; syntaxin4-inter	2e-27
1wi4_A	109	Synip, syntaxin binding protein 4; syntaxin4-inter	3e-11
1v6b_A	118	Harmonin isoform A1; structural genomics, usher sy	4e-27
1v6b_A	118	Harmonin isoform A1; structural genomics, usher sy	5e-16
2qkv_A	96	Inactivation-NO-after-potential D protein; PDZ dom	5e-27
2qkv_A	96	Inactivation-NO-after-potential D protein; PDZ dom	7e-12
2fcf_A	103	Multiple PDZ domain protein; adaptor molecule, pro	5e-27
2fcf_A	103	Multiple PDZ domain protein; adaptor molecule, pro	2e-11
2dm8_A	116	INAD-like protein; PDZ domain, inadl protein, hina	5e-27
2dm8_A	116	INAD-like protein; PDZ domain, inadl protein, hina	1e-12
2r4h_A	112	Membrane-associated guanylate kinase, WW and PDZ c	1e-26
2r4h_A	112	Membrane-associated guanylate kinase, WW and PDZ c	6e-11
1ihj_A	98	INAD; intermolecular disulfide bond, PDZ domain, s	1e-26
1ihj_A	98	INAD; intermolecular disulfide bond, PDZ domain, s	4e-13
1wh1_A	124	KIAA1095 protein; PDZ domain, structural genomics,	1e-26
1wh1_A	124	KIAA1095 protein; PDZ domain, structural genomics,	3e-10
2csj_A	117	TJP2 protein; PDZ domain, structural genomics, NPP	1e-26
2csj_A	117	TJP2 protein; PDZ domain, structural genomics, NPP	4e-09
2iwq_A	123	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	2e-26
2iwq_A	123	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	2e-11
2dlu_A	111	INAD-like protein; PDZ domain, inadl protein, hina	2e-26
2dlu_A	111	INAD-like protein; PDZ domain, inadl protein, hina	5e-11
2dmz_A	129	INAD-like protein; PDZ domain, inadl protein, hina	4e-26
2dmz_A	129	INAD-like protein; PDZ domain, inadl protein, hina	7e-12
2h2b_A	107	Tight junction protein ZO-1; PDZ domain, phage der	6e-26
2h2b_A	107	Tight junction protein ZO-1; PDZ domain, phage der	5e-09
2gzv_A	114	PRKCA-binding protein; protein kinase C, PDZ domai	1e-25
2gzv_A	114	PRKCA-binding protein; protein kinase C, PDZ domai	8e-12
3hpk_A	125	Protein interacting with PRKCA 1; oxidized, PDZ do	1e-25
3hpk_A	125	Protein interacting with PRKCA 1; oxidized, PDZ do	5e-11
2dkr_A	93	LIN-7 homolog B; LIN-7B, PDZ, structural genomics,	2e-25
2dkr_A	93	LIN-7 homolog B; LIN-7B, PDZ, structural genomics,	1e-10
1um7_A	113	Synapse-associated protein 102; PDZ, discs large h	2e-25
1um7_A	113	Synapse-associated protein 102; PDZ, discs large h	9e-11
2jil_A	97	GRIP1 protein, glutamate receptor interacting prot	2e-25
2jil_A	97	GRIP1 protein, glutamate receptor interacting prot	4e-13
2la8_A	106	Inactivation-NO-after-potential D protein, KON-TI	3e-25
2la8_A	106	Inactivation-NO-after-potential D protein, KON-TI	3e-11
3egg_C	170	Spinophilin; PP1, serine/threonine phosphatase, po	1e-24
3egg_C	170	Spinophilin; PP1, serine/threonine phosphatase, po	3e-11
1qav_A	90	Alpha-1 syntrophin (residues 77-171); beta-finger,	1e-24
1qav_A	90	Alpha-1 syntrophin (residues 77-171); beta-finger,	6e-11
1wif_A	126	RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, s	1e-24
1wif_A	126	RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, s	3e-09
1uez_A	101	KIAA1526 protein; PDZ domain, structural genomics,	1e-24
1uez_A	101	KIAA1526 protein; PDZ domain, structural genomics,	1e-09
3i4w_A	104	Disks large homolog 4; alpha and beta protein, alt	2e-24
3i4w_A	104	Disks large homolog 4; alpha and beta protein, alt	2e-10
1tp5_A	119	Presynaptic density protein 95; PDZ-peptide ligand	3e-24
1tp5_A	119	Presynaptic density protein 95; PDZ-peptide ligand	3e-10
1qau_A	112	Neuronal nitric oxide synthase (residues 1-130); b	4e-24
1qau_A	112	Neuronal nitric oxide synthase (residues 1-130); b	2e-11
2ehr_A	117	INAD-like protein; PDZ domain, inadl protein, hina	5e-24
2ehr_A	117	INAD-like protein; PDZ domain, inadl protein, hina	4e-12
1uew_A	114	Membrane associated guanylate kinase inverted-2 (M	7e-24
1uew_A	114	Membrane associated guanylate kinase inverted-2 (M	2e-12
1x5q_A	110	LAP4 protein; PDZ domain, scribble homolog protein	1e-23
1x5q_A	110	LAP4 protein; PDZ domain, scribble homolog protein	2e-10
2w4f_A	97	Protein LAP4; structural protein, phosphoprotein,	2e-23
2w4f_A	97	Protein LAP4; structural protein, phosphoprotein,	1e-09
3gsl_A	196	Disks large homolog 4; PDZ domain, tandem, PSD-95,	2e-23
3gsl_A	196	Disks large homolog 4; PDZ domain, tandem, PSD-95,	1e-22
3gsl_A	196	Disks large homolog 4; PDZ domain, tandem, PSD-95,	2e-12
3gsl_A	196	Disks large homolog 4; PDZ domain, tandem, PSD-95,	5e-12
2dc2_A	103	GOPC, golgi associated PDZ and coiled-coil motif c	5e-23
2dc2_A	103	GOPC, golgi associated PDZ and coiled-coil motif c	4e-13
1b8q_A	127	Protein (neuronal nitric oxide synthase); PDZ doma	6e-23
1b8q_A	127	Protein (neuronal nitric oxide synthase); PDZ doma	6e-11
3e17_A	88	Tight junction protein ZO-2; domain swapping, alte	6e-23
3e17_A	88	Tight junction protein ZO-2; domain swapping, alte	3e-12
2lob_A	112	Golgi-associated PDZ and coiled-coil motif-contai	1e-22
2lob_A	112	Golgi-associated PDZ and coiled-coil motif-contai	1e-12
3bpu_A	88	Membrane-associated guanylate kinase, WW and PDZ c	2e-22
3bpu_A	88	Membrane-associated guanylate kinase, WW and PDZ c	2e-04
1n7e_A	97	AMPA receptor interacting protein GRIP; PDZ, prote	3e-22
1n7e_A	97	AMPA receptor interacting protein GRIP; PDZ, prote	2e-11
1ufx_A	103	KIAA1526 protein; PDZ domain, structural genomics,	4e-22
1ufx_A	103	KIAA1526 protein; PDZ domain, structural genomics,	7e-11
1n7t_A	103	99-MER peptide of densin-180-like protein; PDZ dom	5e-22
1n7t_A	103	99-MER peptide of densin-180-like protein; PDZ dom	3e-09
2qt5_A	200	Glutamate receptor-interacting protein 1; PDZ-pept	5e-22
2qt5_A	200	Glutamate receptor-interacting protein 1; PDZ-pept	3e-19
2qt5_A	200	Glutamate receptor-interacting protein 1; PDZ-pept	1e-14
2qt5_A	200	Glutamate receptor-interacting protein 1; PDZ-pept	5e-14
1wi2_A	104	Riken cDNA 2700099C19; structural genomics, riken	6e-22
1wi2_A	104	Riken cDNA 2700099C19; structural genomics, riken	3e-10
1mfg_A	95	ERB-B2 interacting protein; PDZ domain, protein-pe	9e-22
1mfg_A	95	ERB-B2 interacting protein; PDZ domain, protein-pe	3e-09
3r0h_A	206	INAD, inactivation-NO-after-potential D protein; p	1e-21
3r0h_A	206	INAD, inactivation-NO-after-potential D protein; p	5e-21
3r0h_A	206	INAD, inactivation-NO-after-potential D protein; p	3e-12
3r0h_A	206	INAD, inactivation-NO-after-potential D protein; p	5e-09
1v62_A	117	KIAA1719 protein; structural genomics, synaptic tr	1e-21
1v62_A	117	KIAA1719 protein; structural genomics, synaptic tr	8e-15
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	2e-21
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	2e-17
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	6e-11
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	1e-09
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	1e-08
2rcz_A	81	Tight junction protein ZO-1; PDZ, domain-swapping,	2e-21
2rcz_A	81	Tight junction protein ZO-1; PDZ, domain-swapping,	6e-15
3cyy_A	92	Tight junction protein ZO-1; protein-ligand comple	3e-21
3cyy_A	92	Tight junction protein ZO-1; protein-ligand comple	1e-15
2q3g_A	89	PDZ and LIM domain protein 7; structural genomics,	4e-21
2q3g_A	89	PDZ and LIM domain protein 7; structural genomics,	3e-09
2yt7_A	101	Amyloid beta A4 precursor protein-binding family A	4e-21
2yt7_A	101	Amyloid beta A4 precursor protein-binding family A	7e-14
1uf1_A	128	KIAA1526 protein; PDZ domain, structural genomics,	5e-21
1uf1_A	128	KIAA1526 protein; PDZ domain, structural genomics,	9e-08
1p1d_A	196	PDZ45, glutamate receptor interacting protein; PDZ	1e-20
1p1d_A	196	PDZ45, glutamate receptor interacting protein; PDZ	4e-20
1p1d_A	196	PDZ45, glutamate receptor interacting protein; PDZ	1e-14
1p1d_A	196	PDZ45, glutamate receptor interacting protein; PDZ	2e-13
2edp_A	100	Fragment, shroom family member 4; APX/shroom famil	2e-20
2edp_A	100	Fragment, shroom family member 4; APX/shroom famil	1e-07
2eeh_A	100	PDZ domain-containing protein 7; structural genomi	2e-20
2eeh_A	100	PDZ domain-containing protein 7; structural genomi	2e-10
2pa1_A	87	PDZ and LIM domain protein 2; PDZ domain, structur	3e-20
2pa1_A	87	PDZ and LIM domain protein 2; PDZ domain, structur	8e-10
1m5z_A	91	GRIP, AMPA receptor interacting protein; six beta-	5e-20
1m5z_A	91	GRIP, AMPA receptor interacting protein; six beta-	1e-11
1rgw_A	85	ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK,	7e-20
1rgw_A	85	ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK,	5e-09
2uzc_A	88	Human pdlim5, PDZ and LIM domain 5; metal-binding,	7e-20
2uzc_A	88	Human pdlim5, PDZ and LIM domain 5; metal-binding,	3e-09
1nf3_C	128	PAR-6B; semi-CRIB motif, switch I and II, PDZ doma	9e-20
1nf3_C	128	PAR-6B; semi-CRIB motif, switch I and II, PDZ doma	2e-14
3tsv_A	124	Tight junction protein ZO-1; PDZ, scaffolding, JAM	1e-19
3tsv_A	124	Tight junction protein ZO-1; PDZ, scaffolding, JAM	8e-10
1ujv_A	96	Membrane associated guanylate kinase inverted-2 (M	2e-19
1ujv_A	96	Membrane associated guanylate kinase inverted-2 (M	2e-05
1x5n_A	114	Harmonin; PDZ domain, usher syndrome 1C protein, a	3e-19
1x5n_A	114	Harmonin; PDZ domain, usher syndrome 1C protein, a	1e-09
1vb7_A	94	PDZ and LIM domain 2; PDZ domain PDZ-LIM protein,	4e-19
1vb7_A	94	PDZ and LIM domain 2; PDZ domain PDZ-LIM protein,	4e-09
3gge_A	95	PDZ domain-containing protein GIPC2; structural ge	5e-19
3gge_A	95	PDZ domain-containing protein GIPC2; structural ge	3e-08
2eeg_A	94	PDZ and LIM domain protein 4; PDZ domain, structur	6e-19
2eeg_A	94	PDZ and LIM domain protein 4; PDZ domain, structur	4e-09
3k1r_A	192	Harmonin; protein-protein complex, alternative spl	6e-19
3k1r_A	192	Harmonin; protein-protein complex, alternative spl	1e-09
1g9o_A	91	NHE-RF; PDZ domain, complex, signaling protein; 1.	1e-18
1g9o_A	91	NHE-RF; PDZ domain, complex, signaling protein; 1.	8e-08
2pkt_A	91	PDZ and LIM domain protein 1; PDZ domain, structur	1e-18
2pkt_A	91	PDZ and LIM domain protein 1; PDZ domain, structur	3e-08
2vz5_A	139	TAX1-binding protein 3; WNT signaling pathway, pro	1e-18
2vz5_A	139	TAX1-binding protein 3; WNT signaling pathway, pro	1e-09
1wf7_A	103	Enigma homologue protein; PDZ domain, structural g	1e-18
1wf7_A	103	Enigma homologue protein; PDZ domain, structural g	3e-09
1v5l_A	103	PDZ and LIM domain 3; actinin alpha 2 associated L	2e-18
1v5l_A	103	PDZ and LIM domain 3; actinin alpha 2 associated L	9e-09
1v5q_A	122	GRIP1 homolog, glutamate receptor interacting prot	3e-18
1v5q_A	122	GRIP1 homolog, glutamate receptor interacting prot	2e-13
2edv_A	96	FERM and PDZ domain-containing protein 1; cytoskel	3e-18
2edv_A	96	FERM and PDZ domain-containing protein 1; cytoskel	3e-08
2cs5_A	119	Tyrosine-protein phosphatase, non-receptor type 4;	3e-18
2cs5_A	119	Tyrosine-protein phosphatase, non-receptor type 4;	2e-10
3r68_A	95	Na(+)/H(+) exchange regulatory cofactor NHE-RF3; P	3e-18
3r68_A	95	Na(+)/H(+) exchange regulatory cofactor NHE-RF3; P	3e-06
3qe1_A	107	Sorting nexin-27, G protein-activated inward RECT	4e-18
3qe1_A	107	Sorting nexin-27, G protein-activated inward RECT	7e-08
3nfk_A	107	Tyrosine-protein phosphatase non-receptor type 4;	5e-18
3nfk_A	107	Tyrosine-protein phosphatase non-receptor type 4;	2e-10
3o46_A	93	Maguk P55 subfamily member 7; PDZ domain, structur	7e-18
3o46_A	93	Maguk P55 subfamily member 7; PDZ domain, structur	3e-12
2eaq_A	90	LIM domain only protein 7; conserved hypothetical	8e-18
2eaq_A	90	LIM domain only protein 7; conserved hypothetical	2e-09
1z87_A	263	Alpha-1-syntrophin; protein binding; NMR {Mus musc	8e-18
1z87_A	263	Alpha-1-syntrophin; protein binding; NMR {Mus musc	1e-08
2vsv_A	109	Rhophilin-2; scaffold protein, RHO GTPase binding,	8e-18
2vsv_A	109	Rhophilin-2; scaffold protein, RHO GTPase binding,	1e-05
2v90_A	96	PDZ domain-containing protein 3; membrane, protein	1e-17
2v90_A	96	PDZ domain-containing protein 3; membrane, protein	2e-07
2he4_A	90	Na(+)/H(+) exchange regulatory cofactor NHE-RF2; p	2e-17
2he4_A	90	Na(+)/H(+) exchange regulatory cofactor NHE-RF2; p	1e-07
2jxo_A	98	Ezrin-radixin-moesin-binding phosphoprotein 50; nh	2e-17
2jxo_A	98	Ezrin-radixin-moesin-binding phosphoprotein 50; nh	1e-07
1va8_A	113	Maguk P55 subfamily member 5; PDZ domain, palmitoy	2e-17
1va8_A	113	Maguk P55 subfamily member 5; PDZ domain, palmitoy	4e-14
1uit_A	117	Human discs large 5 protein; PDZ domain, HDLG5, ma	5e-17
1uit_A	117	Human discs large 5 protein; PDZ domain, HDLG5, ma	1e-09
2kv8_A	83	RGS12, regulator of G-protein signaling 12; PDZ do	5e-17
2kv8_A	83	RGS12, regulator of G-protein signaling 12; PDZ do	1e-07
3soe_A	113	Membrane-associated guanylate kinase, WW and PDZ c	8e-17
3soe_A	113	Membrane-associated guanylate kinase, WW and PDZ c	5e-05
2f5y_A	91	Regulator of G-protein signalling 3 isoform 1; PDZ	1e-16
2f5y_A	91	Regulator of G-protein signalling 3 isoform 1; PDZ	2e-07
1w9e_A	166	Syntenin 1; cell adhesion, adhesion/complex, PDZ d	2e-16
1w9e_A	166	Syntenin 1; cell adhesion, adhesion/complex, PDZ d	1e-08
1w9e_A	166	Syntenin 1; cell adhesion, adhesion/complex, PDZ d	3e-05
1w9e_A	166	Syntenin 1; cell adhesion, adhesion/complex, PDZ d	4e-05
2vsp_A	91	PDZ domain-containing protein 1; membrane, cytopla	3e-16
2vsp_A	91	PDZ domain-containing protein 1; membrane, cytopla	6e-07
1whd_A	100	RGS3, regulator of G-protein signaling 3; PDZ doma	3e-16
1whd_A	100	RGS3, regulator of G-protein signaling 3; PDZ doma	1e-07
3khf_A	99	Microtubule-associated serine/threonine-protein ki	4e-16
3khf_A	99	Microtubule-associated serine/threonine-protein ki	1e-05
2eei_A	106	PDZ domain-containing protein 1; regulatory factor	5e-16
2eei_A	106	PDZ domain-containing protein 1; regulatory factor	1e-07
2ego_A	96	General receptor for phosphoinositides 1- associat	1e-15
2ego_A	96	General receptor for phosphoinositides 1- associat	9e-08
2kjd_A	128	Sodium/hydrogen exchange regulatory cofactor NHE-	2e-15
2kjd_A	128	Sodium/hydrogen exchange regulatory cofactor NHE-	4e-05
2dls_A	93	PDZ-rhogef, RHO guanine nucleotide exchange factor	2e-15
2dls_A	93	PDZ-rhogef, RHO guanine nucleotide exchange factor	6e-08
2ejy_A	97	55 kDa erythrocyte membrane protein; GPC, maguk, P	3e-15
2ejy_A	97	55 kDa erythrocyte membrane protein; GPC, maguk, P	1e-14
1kwa_A	88	Hcask/LIN-2 protein; PDZ domain, neurexin, syndeca	5e-15
1kwa_A	88	Hcask/LIN-2 protein; PDZ domain, neurexin, syndeca	4e-12
1vae_A	111	Rhophilin 2, rhophilin, RHO GTPase binding protein	5e-15
1vae_A	111	Rhophilin 2, rhophilin, RHO GTPase binding protein	1e-05
2d90_A	102	PDZ domain containing protein 1; structural genomi	7e-15
2d90_A	102	PDZ domain containing protein 1; structural genomi	9e-06
3kzd_A	94	TIAM-1, T-lymphoma invasion and metastasis-inducin	6e-14
3kzd_A	94	TIAM-1, T-lymphoma invasion and metastasis-inducin	6e-08
2z17_A	104	Pleckstrin homology SEC7 and coiled-coil domains-	7e-14
2z17_A	104	Pleckstrin homology SEC7 and coiled-coil domains-	8e-09
1q3o_A	109	Shank1; PDZ, GKAP, peptide binding protein; 1.80A	1e-13
1q3o_A	109	Shank1; PDZ, GKAP, peptide binding protein; 1.80A	4e-06
2d8i_A	114	T-cell lymphoma invasion and metastasis 1 variant;	2e-13
2d8i_A	114	T-cell lymphoma invasion and metastasis 1 variant;	3e-09
3ngh_A	106	PDZ domain-containing protein 1; adaptor protein,	3e-13
3ngh_A	106	PDZ domain-containing protein 1; adaptor protein,	1e-07
2edz_A	114	PDZ domain-containing protein 1; CFTR-associated p	3e-13
2edz_A	114	PDZ domain-containing protein 1; CFTR-associated p	2e-08
3l4f_D	132	SH3 and multiple ankyrin repeat domains protein 1;	7e-13
3l4f_D	132	SH3 and multiple ankyrin repeat domains protein 1;	3e-06
2yuy_A	126	RHO GTPase activating protein 21; PDZ domain, stru	2e-12
2yuy_A	126	RHO GTPase activating protein 21; PDZ domain, stru	7e-06
2qbw_A	195	PDZ-fibronectin fusion protein; fibronectin PDZ, u	2e-12
2qbw_A	195	PDZ-fibronectin fusion protein; fibronectin PDZ, u	2e-05
2krg_A	216	Na(+)/H(+) exchange regulatory cofactor NHE-RF1; a	4e-12
2krg_A	216	Na(+)/H(+) exchange regulatory cofactor NHE-RF1; a	6e-04
2e7k_A	91	Maguk P55 subfamily member 2; PDZ domain, MPP2 pro	6e-12
2e7k_A	91	Maguk P55 subfamily member 2; PDZ domain, MPP2 pro	1e-08
3suz_A	388	Amyloid beta A4 precursor protein-binding family 2	1e-11
3suz_A	388	Amyloid beta A4 precursor protein-binding family 2	2e-09
3suz_A	388	Amyloid beta A4 precursor protein-binding family 2	2e-07
3suz_A	388	Amyloid beta A4 precursor protein-binding family 2	2e-07
3tsz_A	391	Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffol	2e-11
3tsz_A	391	Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffol	7e-09
1r6j_A	82	Syntenin 1; PDZ, membrane protein; 0.73A {Homo sap	2e-10
1r6j_A	82	Syntenin 1; PDZ, membrane protein; 0.73A {Homo sap	1e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-08
1y7n_A	90	Amyloid beta A4 precursor protein-binding family A	2e-10
1y7n_A	90	Amyloid beta A4 precursor protein-binding family A	8e-08
3shw_A	468	Tight junction protein ZO-1; PDZ-SH3-GUK supramodu	2e-10
3shw_A	468	Tight junction protein ZO-1; PDZ-SH3-GUK supramodu	5e-08
2yub_A	118	LIMK-2, LIM domain kinase 2; PDZ domain, structura	2e-05
2pzd_A	113	Serine protease HTRA2; PDZ domain, apoptosis, mito	6e-04
4fgm_A	597	Aminopeptidase N family protein; structural genomi	7e-04
2hga_A	125	Conserved protein MTH1368; GFT structural genomics	8e-04

>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor, PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2 Length = 130

 Score =  127 bits (320), Expect = 1e-34
 Identities = 32/113 (28%), Positives = 52/113 (46%), Gaps = 2/113 (1%)

Query: 558 TSTNFCTLPRRPRSAICTFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQ 617
            S +  +      +A  T  T+  EK     GLGF++ GGK S  G   + I  I     
Sbjct: 12  ASASAASDVSVESTAEATVCTVTLEKMSA--GLGFSLEGGKGSLHGDKPLTINRIFKGAA 69

Query: 618 AAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKNGSISLHICRRLKSKK 670
           + +   ++ GDEIL + G     LT  EA ++ K + +G +++ I R+    K
Sbjct: 70  SEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKALPDGPVTIVIRRKSLQSK 122

>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor, PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2 Length = 130

 Score = 64.4 bits (157), Expect = 1e-12
 Identities = 31/127 (24%), Positives = 56/127 (44%), Gaps = 5/127 (3%)

Query: 358 IPAYQNSSDYHSMMEISELSSENSEDSQEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNI 417
           +P   +S+D  S    S  S  + E + E         +  +  LG  +   K S  G+ 
Sbjct: 1   MPDLNSSTD--SAASASAASDVSVESTAEATVCTVTLEKM-SAGLGFSLEGGKGSLHGD- 56

Query: 418 GGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSII-SSGPLNMDLLISR 476
               +  I  G  +E+   ++ GDEI+ + G  ++GLT  +A +II +     + ++I R
Sbjct: 57  KPLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKALPDGPVTIVIRR 116

Query: 477 TSLKKSN 483
            SL+   
Sbjct: 117 KSLQSKE 123

>2fne_A Multiple PDZ domain protein; structural protein, structural genomics, SGC, structural genomics consortium, unknown function; 1.83A {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score =  124 bits (313), Expect = 8e-34
 Identities = 41/108 (37%), Positives = 64/108 (59%), Gaps = 3/108 (2%)

Query: 558 TSTNFCTLPRRPRSAICTFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQ 617
           +S            ++    +I  E+GP   GLGF+IVGG  SP G + I++K++   G 
Sbjct: 8   SSGVDLGTENLYFQSMPQCKSITLERGP--DGLGFSIVGGYGSPHGDLPIYVKTVFAKGA 65

Query: 618 AAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKNGSISLHICRR 665
           A+EDGRLK GD+I+A+NGQ    +TH EA+++ K  K G+++L +   
Sbjct: 66  ASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRTK-GTVTLMVLSS 112

>2fne_A Multiple PDZ domain protein; structural protein, structural genomics, SGC, structural genomics consortium, unknown function; 1.83A {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score = 63.1 bits (154), Expect = 2e-12
 Identities = 29/103 (28%), Positives = 48/103 (46%), Gaps = 2/103 (1%)

Query: 374 SELSSENSEDSQEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEK 433
            +L +EN       Q       R   + LG  I     S  G++    V  + + G A +
Sbjct: 11  VDLGTENLYFQSMPQCKSITLERG-PDGLGFSIVGGYGSPHGDLP-IYVKTVFAKGAASE 68

Query: 434 EGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISR 476
           +G L+ GD+II+VNGQ L G+T  +A +I+      + L++  
Sbjct: 69  DGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLMVLS 111

>2koj_A Partitioning defective 3 homolog; PDZ domain, structural genomics, alternative splicing, cell cycle, cell division, cell junction, coiled coil; NMR {Mus musculus} PDB: 2ogp_A Length = 111

 Score =  123 bits (311), Expect = 1e-33
 Identities = 32/89 (35%), Positives = 52/89 (58%), Gaps = 3/89 (3%)

Query: 578 TIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQV 637
            I  +KG   +GLGF+I     +  G+  I++K+IL  G A +DGRLK GD ++ +NG  
Sbjct: 14  NIQLKKGT--EGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVD 71

Query: 638 CHDLTHLEAISLFKTIK-NGSISLHICRR 665
               +  E +SL ++ K  G++SL + R+
Sbjct: 72  LAGKSQEEVVSLLRSTKMEGTVSLLVFRQ 100

>2koj_A Partitioning defective 3 homolog; PDZ domain, structural genomics, alternative splicing, cell cycle, cell division, cell junction, coiled coil; NMR {Mus musculus} PDB: 2ogp_A Length = 111

 Score = 58.9 bits (143), Expect = 6e-11
 Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 9/92 (9%)

Query: 402 LGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQA-- 459
           LG  I     +  G+     V +I+  G A ++G L+ GD +I VNG  L G +  +   
Sbjct: 24  LGFSITSRDVTIGGS-APIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLAGKSQEEVVS 82

Query: 460 --KSIISSGPLNMDLLISRTSLKKSNAENEYN 489
             +S    G ++  LL+ R   +++    E N
Sbjct: 83  LLRSTKMEGTVS--LLVFRQ--EEAFHPREMN 110

>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI, structural genomics, alternative splicing, cell cycle, cell division, cell junction; NMR {Homo sapiens} Length = 121

 Score =  123 bits (310), Expect = 2e-33
 Identities = 35/109 (32%), Positives = 55/109 (50%), Gaps = 3/109 (2%)

Query: 558 TSTNFCTLPRRPRSAICTFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQ 617
            S N           I     I  +KG   +GLGF+I     +  G+  I++K+IL  G 
Sbjct: 13  GSENLYFQGSYNTKKIGKRLNIQLKKGT--EGLGFSITSRDVTIGGSAPIYVKNILPRGA 70

Query: 618 AAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIK-NGSISLHICRR 665
           A +DGRLK GD ++ +NG      +  E +SL ++ K  G++SL + R+
Sbjct: 71  AIQDGRLKAGDRLIEVNGVDLVGKSQEEVVSLLRSTKMEGTVSLLVFRQ 119

>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI, structural genomics, alternative splicing, cell cycle, cell division, cell junction; NMR {Homo sapiens} Length = 121

 Score = 59.3 bits (144), Expect = 6e-11
 Identities = 28/119 (23%), Positives = 54/119 (45%), Gaps = 6/119 (5%)

Query: 360 AYQNSSDYHSMMEISELSSENSEDSQEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGG 419
           ++ +   +H    +    S N++    G+ +    ++   E LG  I     +  G+   
Sbjct: 4   SHHHHHHHHGSENLYFQGSYNTKK--IGKRLNIQLKKG-TEGLGFSITSRDVTIGGS-AP 59

Query: 420 FVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLN--MDLLISR 476
             V +I+  G A ++G L+ GD +I VNG  L G +  +  S++ S  +   + LL+ R
Sbjct: 60  IYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLVGKSQEEVVSLLRSTKMEGTVSLLVFR 118

>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.7A {Homo sapiens} PDB: 2iwp_A Length = 120

 Score =  121 bits (306), Expect = 6e-33
 Identities = 32/90 (35%), Positives = 47/90 (52%), Gaps = 2/90 (2%)

Query: 576 FHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAING 635
             T+  +KGP    LG +I GG  SP G + IFI  +   G AA+  +L+ GD I+ I G
Sbjct: 25  LRTVEMKKGPTD-SLGISIAGGVGSPLGDVPIFIAMMHPTGVAAQTQKLRVGDRIVTICG 83

Query: 636 QVCHDLTHLEAISLFKTIKNGSISLHICRR 665
                +TH +A++L K    GSI + +   
Sbjct: 84  TSTEGMTHTQAVNLLKNAS-GSIEMQVVAG 112

>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.7A {Homo sapiens} PDB: 2iwp_A Length = 120

 Score = 62.4 bits (152), Expect = 4e-12
 Identities = 27/110 (24%), Positives = 54/110 (49%), Gaps = 2/110 (1%)

Query: 367 YHSMMEISELSSENSEDSQEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIV 426
           +H      +L +EN      G   V + ++   + LGI IA    S  G++  F+ A + 
Sbjct: 4   HHHHSSGVDLGTENLYFQSMGLRTVEM-KKGPTDSLGISIAGGVGSPLGDVPIFI-AMMH 61

Query: 427 SGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISR 476
             G+A +   L +GD I+++ G    G+T TQA +++ +   ++++ +  
Sbjct: 62  PTGVAAQTQKLRVGDRIVTICGTSTEGMTHTQAVNLLKNASGSIEMQVVA 111

>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A 1vj6_A 1gm1_A 1ozi_A Length = 96

 Score =  120 bits (304), Expect = 7e-33
 Identities = 23/90 (25%), Positives = 43/90 (47%), Gaps = 3/90 (3%)

Query: 576 FHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAING 635
              +   K      LG ++ GG ++     GI++K+++  G A  DGR+ +GD +LA+NG
Sbjct: 6   IFEVELAKNDN--SLGISVTGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNG 63

Query: 636 QVCHDLTHLEAISLFKTIKNGSISLHICRR 665
                 TH +A+   +      + L + + 
Sbjct: 64  VSLEGATHKQAVETLRNTG-QVVHLLLEKG 92

>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A 1vj6_A 1gm1_A 1ozi_A Length = 96

 Score = 64.1 bits (157), Expect = 6e-13
 Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 1/78 (1%)

Query: 399 NEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQ 458
           +  LGI +    N+S  + G +V   ++  G AE +G +  GD +++VNG  L G T  Q
Sbjct: 15  DNSLGISVTGGVNTSVRHGGIYV-KAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQ 73

Query: 459 AKSIISSGPLNMDLLISR 476
           A   + +    + LL+ +
Sbjct: 74  AVETLRNTGQVVHLLLEK 91

>2o2t_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 2.70A {Homo sapiens} Length = 117

 Score =  120 bits (303), Expect = 2e-32
 Identities = 38/91 (41%), Positives = 53/91 (58%), Gaps = 3/91 (3%)

Query: 576 FHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAING 635
                  K P   GLGF++VG +   RG +GIF++ I +   A  DGRLKE D+ILAING
Sbjct: 21  VEVFELLKPPSG-GLGFSVVGLRSENRGELGIFVQEIQEGSVAHRDGRLKETDQILAING 79

Query: 636 Q-VCHDLTHLEAISLFKTIKNGSISLHICRR 665
           Q +   +TH +AIS+ +  K  ++ L I R 
Sbjct: 80  QALDQTITHQQAISILQKAK-DTVQLVIARG 109

>2o2t_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 2.70A {Homo sapiens} Length = 117

 Score = 63.5 bits (155), Expect = 2e-12
 Identities = 30/107 (28%), Positives = 53/107 (49%), Gaps = 2/107 (1%)

Query: 374 SELSSENSEDSQEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEK 433
            E        +Q     V    +  +  LG  +  +++ + G +G FV   I  G +A +
Sbjct: 6   DEFDQLIKNMAQGRHVEVFELLKPPSGGLGFSVVGLRSENRGELGIFV-QEIQEGSVAHR 64

Query: 434 EGCLELGDEIISVNGQRL-RGLTMTQAKSIISSGPLNMDLLISRTSL 479
           +G L+  D+I+++NGQ L + +T  QA SI+      + L+I+R SL
Sbjct: 65  DGRLKETDQILAINGQALDQTITHQQAISILQKAKDTVQLVIARGSL 111

>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 110

 Score =  120 bits (302), Expect = 2e-32
 Identities = 29/89 (32%), Positives = 46/89 (51%), Gaps = 3/89 (3%)

Query: 577 HTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQ 636
            T+  E+GP   GLG  ++ G  +  GA G++I+++L    AA DGRL  GD IL +NG 
Sbjct: 10  FTVELERGP--SGLGMGLIDGMHTHLGAPGLYIQTLLPGSPAAADGRLSLGDRILEVNGS 67

Query: 637 VCHDLTHLEAISLFKTIKNGSISLHICRR 665
               L +L A+ L +      +   + + 
Sbjct: 68  SLLGLGYLRAVDLIRHGGK-KMRFLVAKS 95

>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 110

 Score = 61.2 bits (149), Expect = 9e-12
 Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 1/78 (1%)

Query: 399 NEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQ 458
              LG+ +    ++  G   G  +  ++ G  A  +G L LGD I+ VNG  L GL   +
Sbjct: 18  PSGLGMGLIDGMHTHLGA-PGLYIQTLLPGSPAAADGRLSLGDRILEVNGSSLLGLGYLR 76

Query: 459 AKSIISSGPLNMDLLISR 476
           A  +I  G   M  L+++
Sbjct: 77  AVDLIRHGGKKMRFLVAK 94

>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural genomics, structural genomics consortium, SGC, metal-binding; 1.75A {Homo sapiens} Length = 118

 Score =  119 bits (299), Expect = 6e-32
 Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 2/88 (2%)

Query: 578 TIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQV 637
            +  +K PG+  LG T+ GG       + I++ S+   G  + DGR+K GD +L ++G  
Sbjct: 27  VVNIQKDPGE-SLGMTVAGGASHREWDLPIYVISVEPGGVISRDGRIKTGDILLNVDGVE 85

Query: 638 CHDLTHLEAISLFKTIKNGSISLHICRR 665
             +++  EA++L K     SI L     
Sbjct: 86  LTEVSRSEAVALLKRTS-SSIVLKALEV 112

>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural genomics, structural genomics consortium, SGC, metal-binding; 1.75A {Homo sapiens} Length = 118

 Score = 64.7 bits (158), Expect = 6e-13
 Identities = 21/109 (19%), Positives = 52/109 (47%), Gaps = 2/109 (1%)

Query: 368 HSMMEISELSSENSEDSQEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVS 427
           H      +L +EN       + +V + +    E LG+ +A   +  E ++  +V   +  
Sbjct: 5   HHHSSGVDLGTENLYFQSMHEKVVNIQKDP-GESLGMTVAGGASHREWDLPIYV-ISVEP 62

Query: 428 GGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISR 476
           GG+  ++G ++ GD +++V+G  L  ++ ++A +++     ++ L    
Sbjct: 63  GGVISRDGRIKTGDILLNVDGVELTEVSRSEAVALLKRTSSSIVLKALE 111

>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; PDZ domain, ATP-binding, cell junction, cell membrane; NMR {Homo sapiens} PDB: 2kpl_A Length = 129

 Score =  117 bits (296), Expect = 2e-31
 Identities = 32/100 (32%), Positives = 52/100 (52%), Gaps = 6/100 (6%)

Query: 567 RRPRSAICTFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKE 626
           R P      F      K    +G GFT+VGG +       + IKS++ +G AA DG+++ 
Sbjct: 10  RNPSELKGKFIHTKLRKSS--RGFGFTVVGGDEPDEF---LQIKSLVLDGPAALDGKMET 64

Query: 627 GDEILAINGQVCHDLTHLEAISLFKTIKNG-SISLHICRR 665
           GD I+++N       TH + + +F++I  G S+ L +CR 
Sbjct: 65  GDVIVSVNDTCVLGHTHAQVVKIFQSIPIGASVDLELCRG 104

>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; PDZ domain, ATP-binding, cell junction, cell membrane; NMR {Homo sapiens} PDB: 2kpl_A Length = 129

 Score = 54.8 bits (132), Expect = 3e-09
 Identities = 22/77 (28%), Positives = 32/77 (41%), Gaps = 6/77 (7%)

Query: 402 LGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKS 461
            G  +       E       +  +V  G A  +G +E GD I+SVN   + G T  Q   
Sbjct: 31  FGFTVVGGDEPDEF----LQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVK 86

Query: 462 IISSGPLN--MDLLISR 476
           I  S P+   +DL + R
Sbjct: 87  IFQSIPIGASVDLELCR 103

>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A* 1t2m_A 2ain_A Length = 106

 Score =  116 bits (292), Expect = 4e-31
 Identities = 26/100 (26%), Positives = 49/100 (49%), Gaps = 4/100 (4%)

Query: 566 PRRPRSAICTFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLK 625
           P           T+  +K     G+G +IV  K + +  +GI++KS++  G A  DGRL 
Sbjct: 2   PLGSDHKEPEIITVTLKKQ---NGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLA 58

Query: 626 EGDEILAINGQVCHDLTHLEAISLFKTIKNGSISLHICRR 665
            GD++L+++G+    L+   A  L        ++L + ++
Sbjct: 59  AGDQLLSVDGRSLVGLSQERAAELMTRTS-SVVTLEVAKQ 97

>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A* 1t2m_A 2ain_A Length = 106

 Score = 63.1 bits (154), Expect = 2e-12
 Identities = 23/97 (23%), Positives = 51/97 (52%), Gaps = 3/97 (3%)

Query: 380 NSEDSQEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLEL 439
              D +E + +    ++     +G+ I   K + +  +G +V   +V GG A+ +G L  
Sbjct: 3   LGSDHKEPEIITVTLKKQ--NGMGLSIVAAKGAGQDKLGIYV-KSVVKGGAADVDGRLAA 59

Query: 440 GDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISR 476
           GD+++SV+G+ L GL+  +A  +++     + L +++
Sbjct: 60  GDQLLSVDGRSLVGLSQERAAELMTRTSSVVTLEVAK 96

>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 108

 Score =  115 bits (291), Expect = 5e-31
 Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 3/92 (3%)

Query: 578 TIVFEKGPGKKGLGFTIVGGKDSPR-GAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQ 636
            +   K    KGLGF+I+  +D        I I+S++ +G A   G L  GD ++++N  
Sbjct: 18  IVELVKDC--KGLGFSILDYQDPLDPTRSVIVIRSLVADGVAERSGGLLPGDRLVSVNEY 75

Query: 637 VCHDLTHLEAISLFKTIKNGSISLHICRRLKS 668
              + +  EA+ + K +  G + L IC    S
Sbjct: 76  CLDNTSLAEAVEILKAVPPGLVHLGICSGPSS 107

>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 108

 Score = 62.0 bits (151), Expect = 4e-12
 Identities = 24/101 (23%), Positives = 44/101 (43%), Gaps = 1/101 (0%)

Query: 377 SSENSEDSQEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGC 436
           S  + E +     +  V      + LG  I   ++  +      V+  +V+ G+AE+ G 
Sbjct: 3   SGSSGELALWSPEVKIVELVKDCKGLGFSILDYQDPLDPTRSVIVIRSLVADGVAERSGG 62

Query: 437 LELGDEIISVNGQRLRGLTMTQAKSII-SSGPLNMDLLISR 476
           L  GD ++SVN   L   ++ +A  I+ +  P  + L I  
Sbjct: 63  LLPGDRLVSVNEYCLDNTSLAEAVEILKAVPPGLVHLGICS 103

>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic} Length = 108

 Score =  115 bits (290), Expect = 7e-31
 Identities = 21/93 (22%), Positives = 43/93 (46%), Gaps = 3/93 (3%)

Query: 576 FHTIVFEKGPGKKGLGFTIVGGKDSPRGA--IGIFIKSILDNGQAAEDGRLKEGDEILAI 633
            +++   +      LG +I G +D        GI++KS++    AA DGR++  D+IL +
Sbjct: 13  LYSVELFREKDTSSLGISISGMRDQSTTGEATGIYVKSLIPGSAAALDGRIEPNDKILRV 72

Query: 634 NGQVCHDLTHLEAISLFKTIKNGSISLHICRRL 666
           +      +   + + + +      + L + RRL
Sbjct: 73  DDVNVQGMAQSDVVEVLRNAG-NPVRLLLIRRL 104

>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic} Length = 108

 Score = 61.6 bits (150), Expect = 6e-12
 Identities = 23/101 (22%), Positives = 43/101 (42%), Gaps = 2/101 (1%)

Query: 378 SENSEDSQEGQTM-VRVNRRDFNEELGIYIA-KIKNSSEGNIGGFVVAHIVSGGLAEKEG 435
           S    D+       V + R      LGI I+     S+ G   G  V  ++ G  A  +G
Sbjct: 2   SHGYSDASGFSLYSVELFREKDTSSLGISISGMRDQSTTGEATGIYVKSLIPGSAAALDG 61

Query: 436 CLELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISR 476
            +E  D+I+ V+   ++G+  +    ++ +    + LL+ R
Sbjct: 62  RIEPNDKILRVDDVNVQGMAQSDVVEVLRNAGNPVRLLLIR 102

>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ, structural genomics; NMR {Homo sapiens} Length = 128

 Score =  116 bits (292), Expect = 7e-31
 Identities = 31/91 (34%), Positives = 48/91 (52%), Gaps = 3/91 (3%)

Query: 576 FHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAING 635
              I  E+     GLGF++V  +    G + IF+K +     A  D RLKE D+ILAIN 
Sbjct: 26  IEYIDIERPS-TGGLGFSVVALRSQNLGKVDIFVKDVQPGSVADRDQRLKENDQILAINH 84

Query: 636 Q-VCHDLTHLEAISLFKTIKNGSISLHICRR 665
             +  +++H +AI+L +    GS+ L + R 
Sbjct: 85  TPLDQNISHQQAIALLQQTT-GSLRLIVARE 114

>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ, structural genomics; NMR {Homo sapiens} Length = 128

 Score = 59.4 bits (144), Expect = 6e-11
 Identities = 22/121 (18%), Positives = 57/121 (47%), Gaps = 2/121 (1%)

Query: 365 SDYHSMMEISELSSENSEDSQEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAH 424
           S   S +   + +S   + +Q  Q       R     LG  +  +++ + G +  FV   
Sbjct: 2   SSGSSGLGNEDFNSVIQQMAQGRQIEYIDIERPSTGGLGFSVVALRSQNLGKVDIFV-KD 60

Query: 425 IVSGGLAEKEGCLELGDEIISVNGQRL-RGLTMTQAKSIISSGPLNMDLLISRTSLKKSN 483
           +  G +A+++  L+  D+I+++N   L + ++  QA +++     ++ L+++R  +   +
Sbjct: 61  VQPGSVADRDQRLKENDQILAINHTPLDQNISHQQAIALLQQTTGSLRLIVAREPVHTKS 120

Query: 484 A 484
           +
Sbjct: 121 S 121

>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 123

 Score =  115 bits (290), Expect = 1e-30
 Identities = 31/100 (31%), Positives = 53/100 (53%), Gaps = 6/100 (6%)

Query: 567 RRPRSAICTFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKE 626
           R       TF +   +K     G GFTI+GG +       + +KS++ +G AA+DG+++ 
Sbjct: 11  RDASQLKGTFLSTTLKKSN--MGFGFTIIGGDEPD---EFLQVKSVIPDGPAAQDGKMET 65

Query: 627 GDEILAINGQVCHDLTHLEAISLFKTIKNGS-ISLHICRR 665
           GD I+ IN       TH + + LF+++  G  ++L +CR 
Sbjct: 66  GDVIVYINEVCVLGHTHADVVKLFQSVPIGQSVNLVLCRG 105

>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 123

 Score = 54.7 bits (132), Expect = 2e-09
 Identities = 18/77 (23%), Positives = 32/77 (41%), Gaps = 6/77 (7%)

Query: 402 LGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKS 461
            G  I       E       V  ++  G A ++G +E GD I+ +N   + G T      
Sbjct: 32  FGFTIIGGDEPDEF----LQVKSVIPDGPAAQDGKMETGDVIVYINEVCVLGHTHADVVK 87

Query: 462 IISSGPLN--MDLLISR 476
           +  S P+   ++L++ R
Sbjct: 88  LFQSVPIGQSVNLVLCR 104

>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 124

 Score =  115 bits (290), Expect = 1e-30
 Identities = 34/101 (33%), Positives = 49/101 (48%), Gaps = 5/101 (4%)

Query: 565 LPRRPRSAICTFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRL 624
           + +R        H I  EK     GLG ++ G KD  R  + IF+  I   G AA DGR+
Sbjct: 15  IRQRYADLPGELHIIELEKDKN--GLGLSLAGNKDRSR--MSIFVVGINPEGPAAADGRM 70

Query: 625 KEGDEILAINGQVCHDLTHLEAISLFKTIKNGSISLHICRR 665
           + GDE+L IN Q+ +  +H  A ++ KT     + L   R 
Sbjct: 71  RIGDELLEINNQILYGRSHQNASAIIKTAP-SKVKLVFIRN 110

>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 124

 Score = 62.5 bits (152), Expect = 4e-12
 Identities = 24/107 (22%), Positives = 46/107 (42%), Gaps = 11/107 (10%)

Query: 381 SEDSQEGQTMVRVNRRDFNEELGIYIAKIKNSSEG-----------NIGGFVVAHIVSGG 429
           S  S +  T  ++ +R  +    ++I +++    G           +     V  I   G
Sbjct: 3   SGSSGDAFTDQKIRQRYADLPGELHIIELEKDKNGLGLSLAGNKDRSRMSIFVVGINPEG 62

Query: 430 LAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISR 476
            A  +G + +GDE++ +N Q L G +   A +II + P  + L+  R
Sbjct: 63  PAAADGRMRIGDELLEINNQILYGRSHQNASAIIKTAPSKVKLVFIR 109

>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane, mitochondria distribution, PDZ, membrane, scaffold, mitochondrion, membrane protein; 1.35A {Homo sapiens} PDB: 2jin_A Length = 101

 Score =  113 bits (285), Expect = 3e-30
 Identities = 41/93 (44%), Positives = 57/93 (61%), Gaps = 5/93 (5%)

Query: 578 TIVFEKGPGKKGLGFTIVGGKDSP--RGAIGIFIKSILDNGQAAEDGRLKEGDEILAING 635
            I   +GP   GLGF IVGG D        GI++  I +NG AA DGRL+EGD+IL++NG
Sbjct: 10  EINLTRGPS--GLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNG 67

Query: 636 QVCHDLTHLEAISLFKTIKNGSISLHICRRLKS 668
           Q   +L H +A+ LF+     ++SL +  RL+S
Sbjct: 68  QDLKNLLHQDAVDLFRNAGY-AVSLRVQHRLES 99

>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane, mitochondria distribution, PDZ, membrane, scaffold, mitochondrion, membrane protein; 1.35A {Homo sapiens} PDB: 2jin_A Length = 101

 Score = 55.0 bits (133), Expect = 1e-09
 Identities = 26/97 (26%), Positives = 39/97 (40%), Gaps = 3/97 (3%)

Query: 381 SEDSQEGQTMVRVNRRDFNEELGIYIA-KIKNSSEGNIGGFVVAHIVSGGLAEKEGCLEL 439
           S D    +  + + R      LG  I          N  G  V+ I   G A  +G L+ 
Sbjct: 1   SMDYLVTEEEINLTRG--PSGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQE 58

Query: 440 GDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISR 476
           GD+I+SVNGQ L+ L    A  +  +    + L +  
Sbjct: 59  GDKILSVNGQDLKNLLHQDAVDLFRNAGYAVSLRVQH 95

>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 111

 Score =  113 bits (285), Expect = 4e-30
 Identities = 32/104 (30%), Positives = 52/104 (50%), Gaps = 8/104 (7%)

Query: 571 SAICTFHTIVFEKGPGKKGLGFTIVGGKDSPRGA------IGIFIKSILDNGQAAEDGRL 624
           S+      +  +K PG+  LG +I GG     G        GIFI  +   G A  DGRL
Sbjct: 5   SSGPGLRELCIQKAPGE-RLGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRL 63

Query: 625 KEGDEILAINGQVCHDLTHLEAISLFKTIKNGSISLHICRRLKS 668
           + G  +L +N Q    LTH EA+ L +++ + ++++ +C   +S
Sbjct: 64  RVGLRLLEVNQQSLLGLTHGEAVQLLRSVGD-TLTVLVCDGFES 106

>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 111

 Score = 63.9 bits (156), Expect = 1e-12
 Identities = 26/101 (25%), Positives = 43/101 (42%), Gaps = 6/101 (5%)

Query: 381 SEDSQEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNI-----GGFVVAHIVSGGLAEKEG 435
           S  S  G   + + +    E LGI I        GN       G  ++ +   G A ++G
Sbjct: 3   SGSSGPGLRELCIQKAP-GERLGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDG 61

Query: 436 CLELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISR 476
            L +G  ++ VN Q L GLT  +A  ++ S    + +L+  
Sbjct: 62  RLRVGLRLLEVNQQSLLGLTHGEAVQLLRSVGDTLTVLVCD 102

>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural genomics, structural GEN consortium, SGC, structural protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1 PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A Length = 94

 Score =  113 bits (284), Expect = 4e-30
 Identities = 33/93 (35%), Positives = 49/93 (52%), Gaps = 5/93 (5%)

Query: 575 TFHTIVFEKGPGKKGLGFTIVGGKDSPR--GAIGIFIKSILDNGQAAEDGRLKEGDEILA 632
           T   +   KGP  KGLGF+I GG  +    G   I+I  I++ G A +DGRL+ GD +LA
Sbjct: 3   TIMEVNLLKGP--KGLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLA 60

Query: 633 INGQVCHDLTHLEAISLFKTIKNGSISLHICRR 665
           +N     D+ H EA++  K      + L + + 
Sbjct: 61  VNNTNLQDVRHEEAVASLKNTS-DMVYLKVAKP 92

>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural genomics, structural GEN consortium, SGC, structural protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1 PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A Length = 94

 Score = 56.9 bits (138), Expect = 2e-10
 Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 1/76 (1%)

Query: 402 LGIYIA-KIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAK 460
           LG  IA  I N          +  I+ GG A+K+G L++GD +++VN   L+ +   +A 
Sbjct: 16  LGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAV 75

Query: 461 SIISSGPLNMDLLISR 476
           + + +    + L +++
Sbjct: 76  ASLKNTSDMVYLKVAK 91

>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal transduction, structural genom structural genomics consortium, SGC, signaling protein; 1.85A {Homo sapiens} PDB: 2wl7_A 3rl7_B 1rgr_A* 1kef_A 1zok_A 1iu0_A 1iu2_A Length = 102

 Score =  113 bits (284), Expect = 4e-30
 Identities = 34/96 (35%), Positives = 48/96 (50%), Gaps = 5/96 (5%)

Query: 572 AICTFHTIVFEKGPGKKGLGFTIVGGKDSPR--GAIGIFIKSILDNGQAAEDGRLKEGDE 629
           ++  +  IV E+G    GLGF+I GG D+P      GIFI  I+  G AA DGRL   D 
Sbjct: 1   SMFKYEEIVLERGNS--GLGFSIAGGIDNPHVPDDPGIFITKIIPGGAAAMDGRLGVNDC 58

Query: 630 ILAINGQVCHDLTHLEAISLFKTIKNGSISLHICRR 665
           +L +N     ++ H  A+   K      + L + RR
Sbjct: 59  VLRVNEVDVSEVVHSRAVEALKEAG-PVVRLVVRRR 93

>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal transduction, structural genom structural genomics consortium, SGC, signaling protein; 1.85A {Homo sapiens} PDB: 2wl7_A 3rl7_B 1rgr_A* 1kef_A 1zok_A 1iu0_A 1iu2_A Length = 102

 Score = 56.2 bits (136), Expect = 5e-10
 Identities = 20/79 (25%), Positives = 35/79 (44%), Gaps = 1/79 (1%)

Query: 399 NEELGIYIA-KIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMT 457
           N  LG  IA  I N    +  G  +  I+ GG A  +G L + D ++ VN   +  +  +
Sbjct: 14  NSGLGFSIAGGIDNPHVPDDPGIFITKIIPGGAAAMDGRLGVNDCVLRVNEVDVSEVVHS 73

Query: 458 QAKSIISSGPLNMDLLISR 476
           +A   +      + L++ R
Sbjct: 74  RAVEALKEAGPVVRLVVRR 92

>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain, structural genomics, structural genom consortium, SGC, phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score =  112 bits (283), Expect = 8e-30
 Identities = 33/93 (35%), Positives = 50/93 (53%), Gaps = 5/93 (5%)

Query: 575 TFHTIVFEKGPGKKGLGFTIVGGKDSPR--GAIGIFIKSILDNGQAAEDGRLKEGDEILA 632
           T   I   KGP  KGLGF+I GG  +    G   I++  I+D G A +DGRL+ GD +L 
Sbjct: 24  TVVEIKLFKGP--KGLGFSIAGGVGNQHIPGDNSIYVTKIIDGGAAQKDGRLQVGDRLLM 81

Query: 633 INGQVCHDLTHLEAISLFKTIKNGSISLHICRR 665
           +N     ++TH EA+++ K      + L + + 
Sbjct: 82  VNNYSLEEVTHEEAVAILKNTS-EVVYLKVGKP 113

>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain, structural genomics, structural genom consortium, SGC, phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score = 57.4 bits (139), Expect = 2e-10
 Identities = 25/110 (22%), Positives = 48/110 (43%), Gaps = 3/110 (2%)

Query: 368 HSMMEISELSSENSEDSQEGQTMVRVNRRDFNEELGIYIAKIKNSSEG-NIGGFVVAHIV 426
           H      +L +EN          +++ +    + LG  IA    +          V  I+
Sbjct: 5   HHHSSGVDLGTENLYFQSMTVVEIKLFKG--PKGLGFSIAGGVGNQHIPGDNSIYVTKII 62

Query: 427 SGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISR 476
            GG A+K+G L++GD ++ VN   L  +T  +A +I+ +    + L + +
Sbjct: 63  DGGAAQKDGRLQVGDRLLMVNNYSLEEVTHEEAVAILKNTSEVVYLKVGK 112

>2awx_A Synapse associated protein 97; membrane protein, synaptic signaling, trafficking protein; HET: HIS; 1.80A {Rattus norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A Length = 105

 Score =  112 bits (282), Expect = 9e-30
 Identities = 31/91 (34%), Positives = 50/91 (54%), Gaps = 5/91 (5%)

Query: 577 HTIVFEKGPGKKGLGFTIVGGKDSPR--GAIGIFIKSILDNGQAAEDGRLKEGDEILAIN 634
             I   KGP  KGLGF+I GG  +    G   I++  I++ G A +DG+L+ GD++LA+N
Sbjct: 5   MEIKLIKGP--KGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVN 62

Query: 635 GQVCHDLTHLEAISLFKTIKNGSISLHICRR 665
                ++TH EA++  K      + L + + 
Sbjct: 63  SVSLEEVTHEEAVTALKNTS-DFVYLKVAKP 92

>2awx_A Synapse associated protein 97; membrane protein, synaptic signaling, trafficking protein; HET: HIS; 1.80A {Rattus norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A Length = 105

 Score = 58.1 bits (141), Expect = 1e-10
 Identities = 22/92 (23%), Positives = 42/92 (45%), Gaps = 3/92 (3%)

Query: 402 LGIYIA-KIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAK 460
           LG  IA  + N          V  I+ GG A K+G L++GD++++VN   L  +T  +A 
Sbjct: 16  LGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVSLEEVTHEEAV 75

Query: 461 SIISSGPLNMDLLISRTSLKKSNAENEYNESH 492
           + + +    + L +++           ++  H
Sbjct: 76  TALKNTSDFVYLKVAKP--TSMYISRHHHHHH 105

>2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; PDZ, E6 binding, tumor suppressor, peptide binding protein; 2.15A {Mus musculus} Length = 85

 Score =  111 bits (280), Expect = 9e-30
 Identities = 29/91 (31%), Positives = 51/91 (56%), Gaps = 7/91 (7%)

Query: 575 TFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAIN 634
           + H     K    +G GFT+VGG +       + IKS++ +G AA DG+++ GD I+++N
Sbjct: 1   SIH-TKLRKSS--RGFGFTVVGGDEPDEF---LQIKSLVLDGPAALDGKMETGDVIVSVN 54

Query: 635 GQVCHDLTHLEAISLFKTIKNGS-ISLHICR 664
                  TH + + +F++I  G+ + L +CR
Sbjct: 55  DTCVLGHTHAQVVKIFQSIPIGASVDLELCR 85

>2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; PDZ, E6 binding, tumor suppressor, peptide binding protein; 2.15A {Mus musculus} Length = 85

 Score = 56.5 bits (137), Expect = 2e-10
 Identities = 22/77 (28%), Positives = 32/77 (41%), Gaps = 6/77 (7%)

Query: 402 LGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKS 461
            G  +       E       +  +V  G A  +G +E GD I+SVN   + G T  Q   
Sbjct: 13  FGFTVVGGDEPDEF----LQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVK 68

Query: 462 IISSGPLN--MDLLISR 476
           I  S P+   +DL + R
Sbjct: 69  IFQSIPIGASVDLELCR 85

>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane protein 25, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 120

 Score =  112 bits (282), Expect = 1e-29
 Identities = 41/108 (37%), Positives = 59/108 (54%), Gaps = 5/108 (4%)

Query: 566 PRRPRSAICTFHTIVFEKGPGKKGLGFTIVGGKDSP--RGAIGIFIKSILDNGQAAEDGR 623
                  + T   I   +GP   GLGF IVGG D        GI++  I +NG AA DGR
Sbjct: 8   MNGRVDYLVTEEEINLTRGPS--GLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGR 65

Query: 624 LKEGDEILAINGQVCHDLTHLEAISLFKTIKNGSISLHICRRLKSKKT 671
           L+EGD+IL++NGQ   +L H +A+ LF+     ++SL +  RL+ +  
Sbjct: 66  LQEGDKILSVNGQDLKNLLHQDAVDLFRNAG-YAVSLRVQHRLQVQNG 112

>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane protein 25, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 120

 Score = 54.8 bits (132), Expect = 2e-09
 Identities = 26/101 (25%), Positives = 36/101 (35%), Gaps = 2/101 (1%)

Query: 377 SSENSEDSQEGQTMVRVNRRDFNEELGIYIAK-IKNSSEGNIGGFVVAHIVSGGLAEKEG 435
           S  N               R     LG  I          N  G  V+ I   G A  +G
Sbjct: 6   SGMNGRVDYLVTEEEINLTRG-PSGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDG 64

Query: 436 CLELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISR 476
            L+ GD+I+SVNGQ L+ L    A  +  +    + L +  
Sbjct: 65  RLQEGDKILSVNGQDLKNLLHQDAVDLFRNAGYAVSLRVQH 105

>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 107

 Score =  110 bits (277), Expect = 4e-29
 Identities = 27/92 (29%), Positives = 48/92 (52%), Gaps = 6/92 (6%)

Query: 577 HTIVFEKGPGKKGLGFTIVG---GKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAI 633
             +  EK     GLG +I+G   G D+    +GIF+K++ + G A  DGR++  D+I+ +
Sbjct: 11  FPVELEKDE--DGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEV 68

Query: 634 NGQVCHDLTHLEAISLFKTIKNGSISLHICRR 665
           +G     +T   A ++ +  K G++   I R 
Sbjct: 69  DGISLVGVTQNFAATVLRNTK-GNVRFVIGRE 99

>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 107

 Score = 58.9 bits (143), Expect = 6e-11
 Identities = 24/98 (24%), Positives = 48/98 (48%), Gaps = 3/98 (3%)

Query: 381 SEDSQEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIG--GFVVAHIVSGGLAEKEGCLE 438
           S  S   +       +D  + LGI I  +   ++  +   G  V  +  GG A+++G ++
Sbjct: 2   SSGSSGLELFPVELEKD-EDGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQ 60

Query: 439 LGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISR 476
           + D+I+ V+G  L G+T   A +++ +   N+  +I R
Sbjct: 61  VNDQIVEVDGISLVGVTQNFAATVLRNTKGNVRFVIGR 98

>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics, PDZ domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.36.1.1 PDB: 2koh_A 2k1z_A 2k20_A Length = 127

 Score =  111 bits (279), Expect = 4e-29
 Identities = 35/110 (31%), Positives = 53/110 (48%), Gaps = 9/110 (8%)

Query: 563 CTLPRRPRSAICTFHTIVFEKGPGKKGLGFTIVGGKDSPRGA-IGIFIKSILDNGQAAED 621
           C       S   T    + + G    GLG ++ G K    G  +GIFIKSI+  G A +D
Sbjct: 14  CYALSLESSEQLTLEIPLNDSGS--AGLGVSLKGNKSRETGTDLGIFIKSIIHGGAAFKD 71

Query: 622 GRLKEGDEILAINGQVCHDLTHLEAISLFKTIKN------GSISLHICRR 665
           GRL+  D+++A+NG+     ++ EA+   +   +      G I L I RR
Sbjct: 72  GRLRMNDQLIAVNGETLLGKSNHEAMETLRRSMSMEGNIRGMIQLVILRR 121

>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics, PDZ domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.36.1.1 PDB: 2koh_A 2k1z_A 2k20_A Length = 127

 Score = 62.5 bits (152), Expect = 5e-12
 Identities = 26/99 (26%), Positives = 45/99 (45%)

Query: 365 SDYHSMMEISELSSENSEDSQEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAH 424
           S   S ++        S +S E  T+        +  LG+ +   K+   G   G  +  
Sbjct: 2   SSGSSGLKGEPDCYALSLESSEQLTLEIPLNDSGSAGLGVSLKGNKSRETGTDLGIFIKS 61

Query: 425 IVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSII 463
           I+ GG A K+G L + D++I+VNG+ L G +  +A   +
Sbjct: 62  IIHGGAAFKDGRLRMNDQLIAVNGETLLGKSNHEAMETL 100

>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score =  110 bits (276), Expect = 5e-29
 Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 4/92 (4%)

Query: 577 HTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQ 636
            ++   +G    G G T+ GG+D   G   + ++ +L +G A   GRL+ GD +L ING+
Sbjct: 13  FSVELVRGYA--GFGLTLGGGRDVA-GDTPLAVRGLLKDGPAQRCGRLEVGDLVLHINGE 69

Query: 637 VCHDLTHLEAISLFKTIKNGSISLHICRRLKS 668
               LTH +A+   +      + L I R L  
Sbjct: 70  STQGLTHAQAVERIRAGG-PQLHLVIRRPLSG 100

>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 56.9 bits (138), Expect = 2e-10
 Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 16/81 (19%)

Query: 396 RDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLT 455
           RD   +  + +  +                +  G A++ G LE+GD ++ +NG+  +GLT
Sbjct: 32  RDVAGDTPLAVRGL----------------LKDGPAQRCGRLEVGDLVLHINGESTQGLT 75

Query: 456 MTQAKSIISSGPLNMDLLISR 476
             QA   I +G   + L+I R
Sbjct: 76  HAQAVERIRAGGPQLHLVIRR 96

>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand, cytoplasm, developmental protein, phosphoprotein, WNT signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A 3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A Length = 108

 Score =  110 bits (276), Expect = 7e-29
 Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 4/90 (4%)

Query: 578 TIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQV 637
           T+          LG +IVG  +  RG  GI+I SI+  G  A DGR++ GD +L +N   
Sbjct: 8   TVTLNMEKYN-FLGISIVGQSN-ERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMN 65

Query: 638 CHDLTHLEAISLFKTI--KNGSISLHICRR 665
             ++++ +A+ + + I  K G I L + + 
Sbjct: 66  FENMSNDDAVRVLRDIVHKPGPIVLTVAKS 95

>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand, cytoplasm, developmental protein, phosphoprotein, WNT signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A 3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A Length = 108

 Score = 55.5 bits (134), Expect = 1e-09
 Identities = 20/86 (23%), Positives = 35/86 (40%), Gaps = 5/86 (5%)

Query: 395 RRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGL 454
             +    LGI I    N      GG  +  I+ GG    +G +E GD ++ VN      +
Sbjct: 12  NMEKYNFLGISIVGQSNERGD--GGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENM 69

Query: 455 TMTQAKSI---ISSGPLNMDLLISRT 477
           +   A  +   I   P  + L ++++
Sbjct: 70  SNDDAVRVLRDIVHKPGPIVLTVAKS 95

>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic domain associated protein, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 107

 Score =  109 bits (273), Expect = 2e-28
 Identities = 34/100 (34%), Positives = 53/100 (53%), Gaps = 8/100 (8%)

Query: 577 HTIVFEKGPGKKGLGFTIVGGKDS-----PRGAIGIFIKSILDNGQAAEDGRLKEGDEIL 631
            T+V  +  G   LGF I+GG+ S        + GIF+  I+D+G AA++G L+  D I+
Sbjct: 10  LTLVLHRDSG--SLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRII 67

Query: 632 AINGQVCHDLTHLEAISLFKTIKNGSISLHICRRLKSKKT 671
            +NG+     TH +A+  FKT K   I + + RR     +
Sbjct: 68  EVNGRDLSRATHDQAVEAFKTAKE-PIVVQVLRRTSGPSS 106

>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic domain associated protein, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 107

 Score = 58.2 bits (141), Expect = 9e-11
 Identities = 31/106 (29%), Positives = 48/106 (45%), Gaps = 5/106 (4%)

Query: 383 DSQEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIG----GFVVAHIVSGGLAEKEGCLE 438
               G+++  V  RD +  LG  I   + S + + G    G  V+ IV  G A KEG L+
Sbjct: 3   SGSSGKSLTLVLHRD-SGSLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQ 61

Query: 439 LGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISRTSLKKSNA 484
           + D II VNG+ L   T  QA     +    + + + R +   S+ 
Sbjct: 62  IHDRIIEVNGRDLSRATHDQAVEAFKTAKEPIVVQVLRRTSGPSSG 107

>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission, protein binding; NMR {Rattus norvegicus} Length = 113

 Score =  109 bits (273), Expect = 2e-28
 Identities = 26/98 (26%), Positives = 47/98 (47%), Gaps = 6/98 (6%)

Query: 576 FHTIVFEKGPGKKGLGFTIVGGK---DSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILA 632
              +  EK    +GLG +I+G     D     +GIF+K++ + G A  DGR++  D ++ 
Sbjct: 5   LFPVELEKDS--EGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVE 62

Query: 633 INGQVCHDLTHLEAISLFKTIKNGSISLHICRRLKSKK 670
           ++G     +T   A S+ +  K G +   I R    ++
Sbjct: 63  VDGTSLVGVTQSFAASVLRNTK-GRVRFMIGRERPGEQ 99

>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission, protein binding; NMR {Rattus norvegicus} Length = 113

 Score = 60.9 bits (148), Expect = 1e-11
 Identities = 22/97 (22%), Positives = 47/97 (48%), Gaps = 3/97 (3%)

Query: 402 LGIYIAKIKNSSEGNIG--GFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQA 459
           LGI I  +   ++  +   G  V  +  GG A ++G +++ D ++ V+G  L G+T + A
Sbjct: 17  LGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFA 76

Query: 460 KSIISSGPLNMDLLISR-TSLKKSNAENEYNESHSRE 495
            S++ +    +  +I R    ++S       ++  +E
Sbjct: 77  ASVLRNTKGRVRFMIGRERPGEQSEVAQLIQQTLEQE 113

>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc, LNX2_human, zinc-finger, polymorphism, ring finger protein 1; 1.3A {Homo sapiens} Length = 95

 Score =  108 bits (271), Expect = 2e-28
 Identities = 28/89 (31%), Positives = 40/89 (44%), Gaps = 5/89 (5%)

Query: 577 HTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQ 636
             +   K    + LG  +V   D P    G+FI  +L+ G AA+DGRL   D +LAING 
Sbjct: 5   LQVALHKRDSGEQLGIKLVRRTDEP----GVFILDLLEGGLAAQDGRLSSNDRVLAINGH 60

Query: 637 VCHDLTHLEAISLFKTIKNGSISLHICRR 665
                T   A  + +      ++L I R 
Sbjct: 61  DLKYGTPELAAQIIQASG-ERVNLTIARP 88

>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc, LNX2_human, zinc-finger, polymorphism, ring finger protein 1; 1.3A {Homo sapiens} Length = 95

 Score = 63.9 bits (156), Expect = 7e-13
 Identities = 25/86 (29%), Positives = 46/86 (53%), Gaps = 5/86 (5%)

Query: 391 VRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQR 450
           V +++RD  E+LGI + +  +       G  +  ++ GGLA ++G L   D ++++NG  
Sbjct: 7   VALHKRDSGEQLGIKLVRRTDEP-----GVFILDLLEGGLAAQDGRLSSNDRVLAINGHD 61

Query: 451 LRGLTMTQAKSIISSGPLNMDLLISR 476
           L+  T   A  II +    ++L I+R
Sbjct: 62  LKYGTPELAAQIIQASGERVNLTIAR 87

>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 103

 Score =  108 bits (272), Expect = 2e-28
 Identities = 27/95 (28%), Positives = 46/95 (48%), Gaps = 6/95 (6%)

Query: 578 TIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQV 637
            +   +     G GF I+GG +  +    I I +++  G A  DGRL  GDE++ ++G  
Sbjct: 12  DVHLRRMES--GFGFRILGGDEPGQP---ILIGAVIAMGSADRDGRLHPGDELVYVDGIP 66

Query: 638 CHDLTHLEAISLFK-TIKNGSISLHICRRLKSKKT 671
               TH   I L     +NG ++L + R++ S  +
Sbjct: 67  VAGKTHRYVIDLMHHAARNGQVNLTVRRKVLSGPS 101

>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 103

 Score = 56.9 bits (138), Expect = 2e-10
 Identities = 20/98 (20%), Positives = 40/98 (40%), Gaps = 7/98 (7%)

Query: 381 SEDSQEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELG 440
           S  S   + +    RR      G  I       +      ++  +++ G A+++G L  G
Sbjct: 2   SSGSSGYKELDVHLRRM-ESGFGFRILGGDEPGQP----ILIGAVIAMGSADRDGRLHPG 56

Query: 441 DEIISVNGQRLRGLTMTQAKSIISSGPLN--MDLLISR 476
           DE++ V+G  + G T      ++     N  ++L + R
Sbjct: 57  DELVYVDGIPVAGKTHRYVIDLMHHAARNGQVNLTVRR 94

>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural proteomics in europe, spine, structural genomics, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 108

 Score =  108 bits (271), Expect = 3e-28
 Identities = 25/107 (23%), Positives = 47/107 (43%), Gaps = 12/107 (11%)

Query: 564 TLPRRPRSAICTFHTIVFEKGPGKKGLGFTIV-----GGKDSPRGAIGIFIKSILDNGQA 618
           + P +P         +   K      LG ++      GG ++     GI++K+++  G A
Sbjct: 2   SSPPKP----GDIFEVELAKNDN--SLGISVTVLFDKGGVNTSVRHGGIYVKAVIPQGAA 55

Query: 619 AEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKNGSISLHICRR 665
             DGR+ +GD +LA+NG      TH +A+   +      + L + + 
Sbjct: 56  ESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTG-QVVHLLLEKG 101

>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural proteomics in europe, spine, structural genomics, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 108

 Score = 59.7 bits (145), Expect = 3e-11
 Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 4/82 (4%)

Query: 399 NEELGIYIAKIKNS----SEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGL 454
           +  LGI +  + +     +    GG  V  ++  G AE +G +  GD +++VNG  L G 
Sbjct: 19  DNSLGISVTVLFDKGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGA 78

Query: 455 TMTQAKSIISSGPLNMDLLISR 476
           T  QA   + +    + LL+ +
Sbjct: 79  THKQAVETLRNTGQVVHLLLEK 100

>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics, structural genomics consortium, SGC, signaling protein; 1.40A {Homo sapiens} Length = 92

 Score =  107 bits (270), Expect = 3e-28
 Identities = 33/89 (37%), Positives = 50/89 (56%), Gaps = 6/89 (6%)

Query: 577 HTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQ 636
            TI  +K PGK GLG +IVG ++      G+F+  I+  G A  DGRL +GD+IL +NG+
Sbjct: 6   LTIGLQKKPGK-GLGLSIVGKRNDT----GVFVSDIVKGGIADADGRLMQGDQILMVNGE 60

Query: 637 VCHDLTHLEAISLFKTIKNGSISLHICRR 665
              + T     +L K    G+++L + R 
Sbjct: 61  DVRNATQEAVAALLKC-SLGTVTLEVGRI 88

>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics, structural genomics consortium, SGC, signaling protein; 1.40A {Homo sapiens} Length = 92

 Score = 60.7 bits (148), Expect = 7e-12
 Identities = 23/86 (26%), Positives = 44/86 (51%), Gaps = 6/86 (6%)

Query: 391 VRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQR 450
           + + ++   + LG+ I   +N +     G  V+ IV GG+A+ +G L  GD+I+ VNG+ 
Sbjct: 8   IGLQKKP-GKGLGLSIVGKRNDT-----GVFVSDIVKGGIADADGRLMQGDQILMVNGED 61

Query: 451 LRGLTMTQAKSIISSGPLNMDLLISR 476
           +R  T     +++      + L + R
Sbjct: 62  VRNATQEAVAALLKCSLGTVTLEVGR 87

>2opg_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 1.50A {Homo sapiens} Length = 98

 Score =  108 bits (271), Expect = 3e-28
 Identities = 34/88 (38%), Positives = 46/88 (52%), Gaps = 5/88 (5%)

Query: 578 TIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQV 637
           TI   KG    GLG +IVGG D+  G   I I  + + G A +DGRL  GD+IL +NG  
Sbjct: 7   TIEISKGRT--GLGLSIVGGSDTLLG--AIIIHEVYEEGAACKDGRLWAGDQILEVNGID 62

Query: 638 CHDLTHLEAISLFKTIKNGSISLHICRR 665
               TH EAI++ +      + L + R 
Sbjct: 63  LRKATHDEAINVLRQTP-QRVRLTLYRD 89

>2opg_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 1.50A {Homo sapiens} Length = 98

 Score = 61.2 bits (149), Expect = 7e-12
 Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 3/78 (3%)

Query: 399 NEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQ 458
              LG+ I    ++  G I   ++  +   G A K+G L  GD+I+ VNG  LR  T  +
Sbjct: 14  RTGLGLSIVGGSDTLLGAI---IIHEVYEEGAACKDGRLWAGDQILEVNGIDLRKATHDE 70

Query: 459 AKSIISSGPLNMDLLISR 476
           A +++   P  + L + R
Sbjct: 71  AINVLRQTPQRVRLTLYR 88

>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.35A {Homo sapiens} Length = 97

 Score =  107 bits (270), Expect = 3e-28
 Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 4/90 (4%)

Query: 577 HTIVFEKGPGKKGLGFTIVGGKDSPR-GAIGIFIKSILDNGQAAEDGRLKEGDEILAING 635
             +   K    +GLG TI G     +    GIF+KSI  +     DGR++ GD+I+A++G
Sbjct: 6   FDVELTKNV--QGLGITIAGYIGDKKLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDG 63

Query: 636 QVCHDLTHLEAISLFKTIKNGSISLHICRR 665
                 T+ +A+ + +     ++ L + RR
Sbjct: 64  TNLQGFTNQQAVEVLRHTGQ-TVLLTLMRR 92

>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.35A {Homo sapiens} Length = 97

 Score = 65.0 bits (159), Expect = 3e-13
 Identities = 23/75 (30%), Positives = 36/75 (48%)

Query: 402 LGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKS 461
           LGI IA      +    G  V  I      E +G +++GD+II+V+G  L+G T  QA  
Sbjct: 17  LGITIAGYIGDKKLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVE 76

Query: 462 IISSGPLNMDLLISR 476
           ++      + L + R
Sbjct: 77  VLRHTGQTVLLTLMR 91

>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 105

 Score =  107 bits (270), Expect = 4e-28
 Identities = 33/95 (34%), Positives = 45/95 (47%), Gaps = 6/95 (6%)

Query: 577 HTIVFEKGPGKKGLGFTIVGGKDSP---RGAIGIFIKSILDNGQAAEDGRLKEGDEILAI 633
           H     +     GLGF+I GGK S     G  GIF+  I + G A   G L+ GD +L+I
Sbjct: 9   HVACLARSER--GLGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGDRVLSI 66

Query: 634 NGQVCHDLTHLEAISLFKTIKNGSISLHICRRLKS 668
           NG    +  H  A+SL       +I+L + R   S
Sbjct: 67  NGVDVTEARHDHAVSLLTAASP-TIALLLEREAGS 100

>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 105

 Score = 59.7 bits (145), Expect = 3e-11
 Identities = 26/95 (27%), Positives = 40/95 (42%), Gaps = 3/95 (3%)

Query: 384 SQEGQTMVRVNRRDFNEELGIYIA--KIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGD 441
           S      V    R     LG  IA  K          G  V+ I  GG A + G L++GD
Sbjct: 3   SGSSGRHVACLARS-ERGLGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGD 61

Query: 442 EIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISR 476
            ++S+NG  +       A S++++    + LL+ R
Sbjct: 62  RVLSINGVDVTEARHDHAVSLLTAASPTIALLLER 96

>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor (LCF), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.2 Length = 119

 Score =  108 bits (271), Expect = 4e-28
 Identities = 26/96 (27%), Positives = 52/96 (54%), Gaps = 3/96 (3%)

Query: 576 FHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAING 635
            H  +  K  G  GLGF++ GG D       I +  +  NG A+++G +++G+E+L+ING
Sbjct: 16  IHVTILHKEEGA-GLGFSLAGGADLENK--VITVHRVFPNGLASQEGTIQKGNEVLSING 72

Query: 636 QVCHDLTHLEAISLFKTIKNGSISLHICRRLKSKKT 671
           +     TH +A+++ +  +    ++ + R+L  +  
Sbjct: 73  KSLKGTTHHDALAILRQAREPRQAVIVTRKLTPEAM 108

>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor (LCF), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.2 Length = 119

 Score = 67.1 bits (164), Expect = 1e-13
 Identities = 23/103 (22%), Positives = 46/103 (44%), Gaps = 4/103 (3%)

Query: 374 SELSSENSEDSQEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEK 433
           S  SS  +    +G  +  +++ +    LG     +   ++       V  +   GLA +
Sbjct: 2   SSGSSGATLKQLDGIHVTILHKEE-GAGLGF---SLAGGADLENKVITVHRVFPNGLASQ 57

Query: 434 EGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISR 476
           EG ++ G+E++S+NG+ L+G T   A +I+         +I  
Sbjct: 58  EGTIQKGNEVLSINGKSLKGTTHHDALAILRQAREPRQAVIVT 100

>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1 interacting protein 1, activin receptor interacting protein 1; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 103

 Score =  107 bits (269), Expect = 4e-28
 Identities = 30/93 (32%), Positives = 52/93 (55%), Gaps = 6/93 (6%)

Query: 576 FHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAING 635
           + T+  EKG    G GF+I GG++     + +++  + ++G A  +GR++ GD+I+ ING
Sbjct: 12  YFTVDMEKGAK--GFGFSIRGGREYK---MDLYVLRLAEDGPAIRNGRMRVGDQIIEING 66

Query: 636 QVCHDLTHLEAISLFKTIKNGSISLHICRRLKS 668
           +   D+TH  AI L K+     + L + R   S
Sbjct: 67  ESTRDMTHARAIELIKSGGR-RVRLLLKRGTGS 98

>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1 interacting protein 1, activin receptor interacting protein 1; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 103

 Score = 57.7 bits (140), Expect = 1e-10
 Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 4/75 (5%)

Query: 402 LGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKS 461
            G  I   +           V  +   G A + G + +GD+II +NG+  R +T  +A  
Sbjct: 24  FGFSIRGGREYKMD----LYVLRLAEDGPAIRNGRMRVGDQIIEINGESTRDMTHARAIE 79

Query: 462 IISSGPLNMDLLISR 476
           +I SG   + LL+ R
Sbjct: 80  LIKSGGRRVRLLLKR 94

>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; Cys Ser mutant, S genomics consortium, SGC, transferase; 2.00A {Homo sapiens} Length = 90

 Score =  106 bits (268), Expect = 5e-28
 Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 6/90 (6%)

Query: 577 HTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQ 636
             I   +     G GF I+GG +       I+I  I+  G A  DGRL+ GDE+++++G 
Sbjct: 4   QDIFLWRKET--GFGFRILGGNEPGEP---IYIGHIVPLGAADTDGRLRSGDELISVDGT 58

Query: 637 VCHDLTHLEAISLFKTI-KNGSISLHICRR 665
                +H   + L +   K G ++L + + 
Sbjct: 59  PVIGKSHQLVVQLMQQAAKQGHVNLTVRQT 88

>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; Cys Ser mutant, S genomics consortium, SGC, transferase; 2.00A {Homo sapiens} Length = 90

 Score = 56.5 bits (137), Expect = 2e-10
 Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 2/63 (3%)

Query: 419 GFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLN--MDLLISR 476
              + HIV  G A+ +G L  GDE+ISV+G  + G +      ++        ++L + +
Sbjct: 28  PIYIGHIVPLGAADTDGRLRSGDELISVDGTPVIGKSHQLVVQLMQQAAKQGHVNLTVRQ 87

Query: 477 TSL 479
           T L
Sbjct: 88  TRL 90

>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain, RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2css_A 1zub_A Length = 131

 Score =  107 bits (269), Expect = 8e-28
 Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 1/85 (1%)

Query: 585 PGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHL 644
                LG  +VGGK +  G +  FI  +     A   G L+ GDE+L  NG++    T  
Sbjct: 45  DSGAMLGLKVVGGKMTESGRLCAFITKVKKGSLADTVGHLRPGDEVLEWNGRLLQGATFE 104

Query: 645 EAISLFKTIKN-GSISLHICRRLKS 668
           E  ++    K    + L + R   S
Sbjct: 105 EVYNIILESKPEPQVELVVSRSGPS 129

>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain, RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2css_A 1zub_A Length = 131

 Score = 65.2 bits (159), Expect = 6e-13
 Identities = 32/124 (25%), Positives = 58/124 (46%), Gaps = 11/124 (8%)

Query: 363 NSSDYHSMMEISELSSENSEDSQEGQTMVRVNR--------RDFNEELGIYIAKIKNSSE 414
           + S  HS  +   ++ + S+D       + +N+        RD    LG+ +   K +  
Sbjct: 3   SGSSGHSHSDKHPVTWQPSKDGDRLIGRILLNKRLKDGSVPRDSGAMLGLKVVGGKMTES 62

Query: 415 GNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSII--SSGPLNMDL 472
           G +  F+   +  G LA+  G L  GDE++  NG+ L+G T  +  +II  S     ++L
Sbjct: 63  GRLCAFI-TKVKKGSLADTVGHLRPGDEVLEWNGRLLQGATFEEVYNIILESKPEPQVEL 121

Query: 473 LISR 476
           ++SR
Sbjct: 122 VVSR 125

>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score =  106 bits (266), Expect = 2e-27
 Identities = 29/91 (31%), Positives = 40/91 (43%), Gaps = 3/91 (3%)

Query: 580 VFEKGPGKKGLGFTIVGGKDSP--RGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQV 637
             +      GLG  IVGGK+ P   G IG +I  IL  G A + G+L EG ++L  NG  
Sbjct: 22  SKDHTVSGNGLGIRIVGGKEIPGHSGEIGAYIAKILPGGSAEQTGKLMEGMQVLEWNGIP 81

Query: 638 CHDLTHLEAISLFKTIKNGSISLHICRRLKS 668
               T+ E  S+      G   + +   L  
Sbjct: 82  LTSKTYEEVQSIISQQS-GEAEICVRLDLNM 111

>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score = 62.1 bits (151), Expect = 5e-12
 Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 3/77 (3%)

Query: 402 LGIYIA--KIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQA 459
           LGI I   K      G IG ++ A I+ GG AE+ G L  G +++  NG  L   T  + 
Sbjct: 32  LGIRIVGGKEIPGHSGEIGAYI-AKILPGGSAEQTGKLMEGMQVLEWNGIPLTSKTYEEV 90

Query: 460 KSIISSGPLNMDLLISR 476
           +SIIS      ++ +  
Sbjct: 91  QSIISQQSGEAEICVRL 107

>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein, STXBP4 protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.36.1.1 Length = 109

 Score =  105 bits (265), Expect = 2e-27
 Identities = 24/94 (25%), Positives = 42/94 (44%), Gaps = 6/94 (6%)

Query: 578 TIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQV 637
            ++        GLG  I+GG +   G   ++I  ++  G   +DGRLK GD++++IN + 
Sbjct: 17  RVITVTKE--TGLGLKILGGINRNEGP-LVYIHEVIPGGDCYKDGRLKPGDQLVSINKES 73

Query: 638 CHDLTHLEAISLFKTIKN---GSISLHICRRLKS 668
              ++  EA S+    K        +   R   S
Sbjct: 74  MIGVSFEEAKSIITRAKLRSESPWEIAFIRSGPS 107

>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein, STXBP4 protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.36.1.1 Length = 109

 Score = 59.7 bits (145), Expect = 3e-11
 Identities = 30/108 (27%), Positives = 50/108 (46%), Gaps = 8/108 (7%)

Query: 377 SSENSEDSQEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGC 436
           SS +S    +     RV        LG+ I    N +EG      +  ++ GG   K+G 
Sbjct: 2   SSGSSGSPLDRDPAFRVITVTKETGLGLKILGGINRNEGP--LVYIHEVIPGGDCYKDGR 59

Query: 437 LELGDEIISVNGQRLRGLTMTQAKSII------SSGPLNMDLLISRTS 478
           L+ GD+++S+N + + G++  +AKSII      S  P  +  + S  S
Sbjct: 60  LKPGDQLVSINKESMIGVSFEEAKSIITRAKLRSESPWEIAFIRSGPS 107

>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Mus musculus} SCOP: b.36.1.1 Length = 118

 Score =  105 bits (263), Expect = 4e-27
 Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 5/91 (5%)

Query: 578 TIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQV 637
            +   +   +  L   + GG DSP G   + + ++ + G A   G + +GDEI+AING++
Sbjct: 18  DVRLLRIKKEGSLDLALEGGVDSPVG--KVVVSAVYEGGAAERHGGVVKGDEIMAINGKI 75

Query: 638 CHDLTHLEAISLFKTIKNGS---ISLHICRR 665
             D T  EA +  +   N     I L +   
Sbjct: 76  VTDYTLAEAEAALQKAWNQGGDWIDLVVAVC 106

>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Mus musculus} SCOP: b.36.1.1 Length = 118

 Score = 73.6 bits (181), Expect = 5e-16
 Identities = 28/116 (24%), Positives = 55/116 (47%), Gaps = 7/116 (6%)

Query: 374 SELSSENSEDSQEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEK 433
           SE ++      Q     VR+ R      L + +    +S  G +   VV+ +  GG AE+
Sbjct: 2   SEGAATMFSPEQIAGKDVRLLRIKKEGSLDLALEGGVDSPVGKV---VVSAVYEGGAAER 58

Query: 434 EGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLN----MDLLISRTSLKKSNAE 485
            G +  GDEI+++NG+ +   T+ +A++ +          +DL+++    K+ + E
Sbjct: 59  HGGVVKGDEIMAINGKIVTDYTLAEAEAALQKAWNQGGDWIDLVVAVCPPKEYDDE 114

>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding protein, membrane, sensory transduction, vision; 1.55A {Drosophila melanogaster} PDB: 2qkt_A 2qku_A Length = 96

 Score =  104 bits (261), Expect = 5e-27
 Identities = 25/97 (25%), Positives = 41/97 (42%), Gaps = 9/97 (9%)

Query: 569 PRSAICTFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGD 628
           PR+++  F  +   K  GK  LG ++   +       G  I  ++       D +L+ GD
Sbjct: 3   PRNSLEKF-NVDLMKKAGK-ELGLSLSPNEI------GCTIADLIQGQYPEIDSKLQRGD 54

Query: 629 EILAINGQVCHDLTHLEAISLFKTIKNGSISLHICRR 665
            I   NG     L    + +LFK   NG +S+ + R 
Sbjct: 55  IITKFNGDALEGLPFQVSYALFKGA-NGKVSMEVTRP 90

>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding protein, membrane, sensory transduction, vision; 1.55A {Drosophila melanogaster} PDB: 2qkt_A 2qku_A Length = 96

 Score = 61.2 bits (149), Expect = 7e-12
 Identities = 19/86 (22%), Positives = 38/86 (44%), Gaps = 8/86 (9%)

Query: 391 VRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQR 450
           V + ++   +ELG+ ++        N  G  +A ++ G   E +  L+ GD I   NG  
Sbjct: 12  VDLMKKA-GKELGLSLS-------PNEIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDA 63

Query: 451 LRGLTMTQAKSIISSGPLNMDLLISR 476
           L GL    + ++       + + ++R
Sbjct: 64  LEGLPFQVSYALFKGANGKVSMEVTR 89

>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker, structural genomics, struc genomics consortium, SGC, structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1 Length = 103

 Score =  104 bits (261), Expect = 5e-27
 Identities = 26/99 (26%), Positives = 47/99 (47%), Gaps = 8/99 (8%)

Query: 577 HTIVFEKGPGKKGLGFTIVGGKDSPRGA------IGIFIKSILDNGQAAEDGRLKEGDEI 630
             +   + P K  LG +IVGG+             GIFIK +L++  A ++G LK GD I
Sbjct: 6   RRVELWREPSK-SLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRI 64

Query: 631 LAINGQVCHDLTHLEAISLFKTIKNGSISLHICRRLKSK 669
           + ++G    D +H +A+   +   N  +   +   + ++
Sbjct: 65  VEVDGMDLRDASHEQAVEAIRKAGN-PVVFMVQSIISTR 102

>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker, structural genomics, struc genomics consortium, SGC, structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1 Length = 103

 Score = 60.4 bits (147), Expect = 2e-11
 Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 5/87 (5%)

Query: 395 RRDFNEELGIYIA-----KIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQ 449
            R+ ++ LGI I        + S+   + G  + H++    A K G L+ GD I+ V+G 
Sbjct: 11  WREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGM 70

Query: 450 RLRGLTMTQAKSIISSGPLNMDLLISR 476
            LR  +  QA   I      +  ++  
Sbjct: 71  DLRDASHEQAVEAIRKAGNPVVFMVQS 97

>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 116

 Score =  104 bits (262), Expect = 5e-27
 Identities = 34/89 (38%), Positives = 46/89 (51%), Gaps = 5/89 (5%)

Query: 577 HTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQ 636
             I   KG    GLG +IVGGKD+P     I I  + + G AA DGRL  GD+IL +NG 
Sbjct: 19  MIIEISKGR--SGLGLSIVGGKDTPLN--AIVIHEVYEEGAAARDGRLWAGDQILEVNGV 74

Query: 637 VCHDLTHLEAISLFKTIKNGSISLHICRR 665
              + +H EAI+  +      + L + R 
Sbjct: 75  DLRNSSHEEAITALRQTP-QKVRLVVYRD 102

>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 116

 Score = 64.3 bits (157), Expect = 1e-12
 Identities = 26/100 (26%), Positives = 45/100 (45%), Gaps = 4/100 (4%)

Query: 377 SSENSEDSQEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGC 436
           S   +     GQ M+    +     LG+ I   K++    I   V+  +   G A ++G 
Sbjct: 6   SGPATCPIVPGQEMIIEISKG-RSGLGLSIVGGKDTPLNAI---VIHEVYEEGAAARDGR 61

Query: 437 LELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISR 476
           L  GD+I+ VNG  LR  +  +A + +   P  + L++ R
Sbjct: 62  LWAGDQILEVNGVDLRNSSHEEAITALRQTPQKVRLVVYR 101

>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; transferase, STRU genomics, structural genomics consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo sapiens} Length = 112

 Score =  103 bits (260), Expect = 1e-26
 Identities = 27/90 (30%), Positives = 49/90 (54%), Gaps = 6/90 (6%)

Query: 576 FHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAING 635
           F+T+  E+G    G GF++ GG++     + +++  + ++G A   G+++ GDEIL ING
Sbjct: 25  FYTVELERGAK--GFGFSLRGGREYN---MDLYVLRLAEDGPAERSGKMRIGDEILEING 79

Query: 636 QVCHDLTHLEAISLFKTIKNGSISLHICRR 665
           +   ++ H  AI L K      + L + R 
Sbjct: 80  ETTKNMKHSRAIELIKNGGR-RVRLFLKRG 108

>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; transferase, STRU genomics, structural genomics consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo sapiens} Length = 112

 Score = 58.9 bits (143), Expect = 6e-11
 Identities = 24/103 (23%), Positives = 46/103 (44%), Gaps = 6/103 (5%)

Query: 374 SELSSENSEDSQEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEK 433
            +L +EN          V + R    +  G     ++   E N+    V  +   G AE+
Sbjct: 11  VDLGTENLYFQSMDFYTVELERGA--KGFGF---SLRGGREYNMD-LYVLRLAEDGPAER 64

Query: 434 EGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISR 476
            G + +GDEI+ +NG+  + +  ++A  +I +G   + L + R
Sbjct: 65  SGKMRIGDEILEINGETTKNMKHSRAIELIKNGGRRVRLFLKR 107

>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein; 1.80A {Drosophila melanogaster} SCOP: b.36.1.1 Length = 98

 Score =  103 bits (258), Expect = 1e-26
 Identities = 31/91 (34%), Positives = 40/91 (43%), Gaps = 5/91 (5%)

Query: 577 HTIVFEKGPGKKGLGFTIVGGKDSP---RGAIGIFIKSILDNGQAAEDGRLKEGDEILAI 633
           H +  +K   K   G  IV G+          GIFIK I+ +  A   GRLK GD IL++
Sbjct: 7   HMVTLDKTGKK-SFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSL 65

Query: 634 NGQVCHDLTHLEAISLFKTIKNGSISLHICR 664
           NG+   + T    I L K      I L I  
Sbjct: 66  NGKDVRNSTEQAVIDLIKEADF-KIELEIQT 95

>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein; 1.80A {Drosophila melanogaster} SCOP: b.36.1.1 Length = 98

 Score = 64.6 bits (158), Expect = 4e-13
 Identities = 24/94 (25%), Positives = 41/94 (43%), Gaps = 3/94 (3%)

Query: 386 EGQTMVRVN-RRDFNEELGIYIA--KIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDE 442
            G+ +  V   +   +  GI I   ++K+S      G  +  IV    A   G L++GD 
Sbjct: 2   AGELIHMVTLDKTGKKSFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDR 61

Query: 443 IISVNGQRLRGLTMTQAKSIISSGPLNMDLLISR 476
           I+S+NG+ +R  T      +I      ++L I  
Sbjct: 62  ILSLNGKDVRNSTEQAVIDLIKEADFKIELEIQT 95

>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 124

 Score =  104 bits (260), Expect = 1e-26
 Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 3/90 (3%)

Query: 576 FHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAING 635
              +   +   +  LG T+    D     IGI+I  I  N  AA+DGR++EGD I+ ING
Sbjct: 20  LEEVDLYRMNSQDKLGLTVCYRTDDEDD-IGIYISEIDPNSIAAKDGRIREGDRIIQING 78

Query: 636 QVCHDLTHLEAISLFKTIKNGSISLHICRR 665
               +     A++L  + +N + SL I R 
Sbjct: 79  IEVQNREE--AVALLTSEENKNFSLLIARP 106

>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 124

 Score = 57.2 bits (138), Expect = 3e-10
 Identities = 28/121 (23%), Positives = 58/121 (47%), Gaps = 6/121 (4%)

Query: 374 SELSSENSEDSQEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEK 433
            ++  E   +  E +  V + R +  ++LG+ +   +   E +IG ++ + I    +A K
Sbjct: 7   GDIHQEMDREELELEE-VDLYRMNSQDKLGLTVC-YRTDDEDDIGIYI-SEIDPNSIAAK 63

Query: 434 EGCLELGDEIISVNGQRLRGLTMTQAKSIISS-GPLNMDLLISRTSLKKSNAENEYNESH 492
           +G +  GD II +NG  ++     +A ++++S    N  LLI+R  L+      + +   
Sbjct: 64  DGRIREGDRIIQINGIEVQ--NREEAVALLTSEENKNFSLLIARPELQLDEGWMDDDSGP 121

Query: 493 S 493
           S
Sbjct: 122 S 122

>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.36.1.1 Length = 117

 Score =  103 bits (259), Expect = 1e-26
 Identities = 27/109 (24%), Positives = 46/109 (42%), Gaps = 7/109 (6%)

Query: 566 PRRPRSAICTFHTIVFEKGPGKKGLGFTIVGGKDSPR---GAIGIFIKSILDNGQAAEDG 622
                  I   +T+  +K   + G G  + GG+D+P    G   I I  +L  G A  DG
Sbjct: 5   SSGMEEVIWEQYTVTLQKDSKR-GFGIAVSGGRDNPHFENGETSIVISDVLPGGPA--DG 61

Query: 623 RLKEGDEILAINGQVCHDLTHLEAISLFKTIKNGSISLHICRRLKSKKT 671
            L+E D ++ +NG    D+ H  A+   +       ++ + R  K +  
Sbjct: 62  LLQENDRVVMVNGTPMEDVLHSFAVQQLRKSGK-IAAIVVKRPRKVQVA 109

>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.36.1.1 Length = 117

 Score = 54.0 bits (130), Expect = 4e-09
 Identities = 19/102 (18%), Positives = 42/102 (41%), Gaps = 5/102 (4%)

Query: 377 SSENSEDSQEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIG--GFVVAHIVSGGLAEKE 434
            S   E+    Q  V + +       GI ++  +++     G    V++ ++ GG A+  
Sbjct: 4   GSSGMEEVIWEQYTVTLQKDS-KRGFGIAVSGGRDNPHFENGETSIVISDVLPGGPAD-- 60

Query: 435 GCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISR 476
           G L+  D ++ VNG  +  +  + A   +        +++ R
Sbjct: 61  GLLQENDRVVMVNGTPMEDVLHSFAVQQLRKSGKIAAIVVKR 102

>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane, HOST- interaction, structural genomics consortium, synaptosome, T junction; 1.80A {Homo sapiens} Length = 123

 Score =  103 bits (258), Expect = 2e-26
 Identities = 26/99 (26%), Positives = 47/99 (47%), Gaps = 8/99 (8%)

Query: 577 HTIVFEKGPGKKGLGFTIVGGKDS------PRGAIGIFIKSILDNGQAAEDGRLKEGDEI 630
             +   + P K  LG +IVGG+             GIFIK +L++  A ++G LK GD I
Sbjct: 26  RRVELWREPSK-SLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRI 84

Query: 631 LAINGQVCHDLTHLEAISLFKTIKNGSISLHICRRLKSK 669
           + ++G    D +H +A+   +   N  +   +   + ++
Sbjct: 85  VEVDGMDLRDASHEQAVEAIRKAGN-PVVFMVQSIISTR 122

>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane, HOST- interaction, structural genomics consortium, synaptosome, T junction; 1.80A {Homo sapiens} Length = 123

 Score = 60.9 bits (148), Expect = 2e-11
 Identities = 27/116 (23%), Positives = 45/116 (38%), Gaps = 7/116 (6%)

Query: 368 HSMMEISELSSENSEDS--QEGQTMVRVNRRDFNEELGIYIA-----KIKNSSEGNIGGF 420
           H     S      +E+   Q  Q       R+ ++ LGI I        + S+   + G 
Sbjct: 2   HHHHHHSSGVDLGTENLYFQSMQPRRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGI 61

Query: 421 VVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISR 476
            + H++    A K G L+ GD I+ V+G  LR  +  QA   I      +  ++  
Sbjct: 62  FIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQS 117

>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 111

 Score =  102 bits (257), Expect = 2e-26
 Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 8/89 (8%)

Query: 577 HTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQ 636
             +         GLGF IVGGK S     G+ +++I+  G A  DGRL+ GD IL I G 
Sbjct: 17  EEVELINDG--SGLGFGIVGGKTS-----GVVVRTIVPGGLADRDGRLQTGDHILKIGGT 69

Query: 637 VCHDLTHLEAISLFKTIKNGSISLHICRR 665
               +T  +   + +     S+ + + R 
Sbjct: 70  NVQGMTSEQVAQVLRNCG-NSVRMLVARD 97

>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 111

 Score = 59.3 bits (144), Expect = 5e-11
 Identities = 28/100 (28%), Positives = 45/100 (45%), Gaps = 7/100 (7%)

Query: 377 SSENSEDSQEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGC 436
            S   E    G         D    LG  I        G   G VV  IV GGLA+++G 
Sbjct: 4   GSSGPETVCWGHVEEVELIND-GSGLGFGIVG------GKTSGVVVRTIVPGGLADRDGR 56

Query: 437 LELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISR 476
           L+ GD I+ + G  ++G+T  Q   ++ +   ++ +L++R
Sbjct: 57  LQTGDHILKIGGTNVQGMTSEQVAQVLRNCGNSVRMLVAR 96

>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 129

 Score =  102 bits (257), Expect = 4e-26
 Identities = 23/105 (21%), Positives = 48/105 (45%), Gaps = 4/105 (3%)

Query: 569 PRSAICTFHTIVFEKGPGKKGLGFTIVGGKDSP--RGAIGIFIKSILDNGQAAEDGRLKE 626
             S++   + +   +  G+  LG  IVG   +     A GI++KS++    A  +G ++ 
Sbjct: 9   SDSSLFETYNVELVRKDGQ-SLGIRIVGYVGTSHTGEASGIYVKSVIPGSAAYHNGHIQV 67

Query: 627 GDEILAINGQVCHDLTHLEAISLFKTIKNGSISLHICRRLKSKKT 671
            D+I+A++G       + + + + +      + L + RR  S  T
Sbjct: 68  NDKIVAVDGVNIQGFANHDVVEVLRNAGQ-VVHLTLVRRKTSSST 111

>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 129

 Score = 62.1 bits (151), Expect = 7e-12
 Identities = 25/102 (24%), Positives = 46/102 (45%), Gaps = 3/102 (2%)

Query: 377 SSENSEDSQEGQTM-VRVNRRDFNEELGIYIA-KIKNSSEGNIGGFVVAHIVSGGLAEKE 434
            S    DS   +T  V + R+D  + LGI I   +  S  G   G  V  ++ G  A   
Sbjct: 4   GSSGGSDSSLFETYNVELVRKD-GQSLGIRIVGYVGTSHTGEASGIYVKSVIPGSAAYHN 62

Query: 435 GCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISR 476
           G +++ D+I++V+G  ++G        ++ +    + L + R
Sbjct: 63  GHIQVNDKIVAVDGVNIQGFANHDVVEVLRNAGQVVHLTLVR 104

>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high affinity ligand, cell adhesio; 1.60A {Homo sapiens} PDB: 2h2c_A 2h3m_A 2rrm_A Length = 107

 Score =  101 bits (254), Expect = 6e-26
 Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 7/92 (7%)

Query: 577 HTIVFEKGPGKKGLGFTIVGGKDSPR---GAIGIFIKSILDNGQAAEDGRLKEGDEILAI 633
           HT+   + PG  G G  I GG+D+P    G   I I  +L  G A  +G+L+E D +  +
Sbjct: 9   HTVTLHRAPGF-GFGIAISGGRDNPHFQSGETSIVISDVLKGGPA--EGQLQENDRVAMV 65

Query: 634 NGQVCHDLTHLEAISLFKTIKNGSISLHICRR 665
           NG    ++ H  A+   +     +  + I R+
Sbjct: 66  NGVSMDNVEHAFAVQQLRKSGK-NAKITIRRK 96

>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high affinity ligand, cell adhesio; 1.60A {Homo sapiens} PDB: 2h2c_A 2h3m_A 2rrm_A Length = 107

 Score = 53.5 bits (129), Expect = 5e-09
 Identities = 20/84 (23%), Positives = 34/84 (40%), Gaps = 4/84 (4%)

Query: 395 RRDFNEELGIYIAKIKNSSEGNIG--GFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLR 452
            R      GI I+  +++     G    V++ ++ GG AE  G L+  D +  VNG  + 
Sbjct: 14  HRAPGFGFGIAISGGRDNPHFQSGETSIVISDVLKGGPAE--GQLQENDRVAMVNGVSMD 71

Query: 453 GLTMTQAKSIISSGPLNMDLLISR 476
            +    A   +     N  + I R
Sbjct: 72  NVEHAFAVQQLRKSGKNAKITIRR 95

>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural genomics, structura genomics consortium, SGC, signaling protein; 1.12A {Homo sapiens} PDB: 2pku_A Length = 114

 Score =  100 bits (252), Expect = 1e-25
 Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 5/89 (5%)

Query: 577 HTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQ 636
             +  +K      +G +I GG         ++I  + DN  AA DG +  GDEI  +NG+
Sbjct: 26  GKVTLQKDAQN-LIGISIGGGAQY---CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGR 81

Query: 637 VCHDLTHLEAISLFKTIKNGSISLHICRR 665
                T +E   + + +K G +++H  + 
Sbjct: 82  SIKGKTKVEVAKMIQEVK-GEVTIHYNKL 109

>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural genomics, structura genomics consortium, SGC, signaling protein; 1.12A {Homo sapiens} PDB: 2pku_A Length = 114

 Score = 61.7 bits (150), Expect = 8e-12
 Identities = 21/110 (19%), Positives = 41/110 (37%), Gaps = 5/110 (4%)

Query: 367 YHSMMEISELSSENSEDSQEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIV 426
           +H      +L +EN          V + ++D    +GI I               +  + 
Sbjct: 4   HHHHSSGVDLGTENLYFQSMVPGKVTL-QKDAQNLIGISIGGGAQYCPC----LYIVQVF 58

Query: 427 SGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISR 476
               A  +G +  GDEI  VNG+ ++G T  +   +I      + +  ++
Sbjct: 59  DNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNK 108

>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase, protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A Length = 125

 Score =  101 bits (253), Expect = 1e-25
 Identities = 23/91 (25%), Positives = 41/91 (45%), Gaps = 5/91 (5%)

Query: 575 TFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAIN 634
               +  +K      +G +I GG         ++I  + DN  AA DG +  GDEI  +N
Sbjct: 19  VPGKVTLQKDAQN-LIGISIGGGAQY---CPCLYIVQVFDNTPAALDGTVAAGDEITGVN 74

Query: 635 GQVCHDLTHLEAISLFKTIKNGSISLHICRR 665
           G+     T +E   + + +K G +++H  + 
Sbjct: 75  GRSIKGKTKVEVAKMIQEVK-GEVTIHYNKL 104

>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase, protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A Length = 125

 Score = 59.4 bits (144), Expect = 5e-11
 Identities = 17/102 (16%), Positives = 37/102 (36%), Gaps = 4/102 (3%)

Query: 375 ELSSENSEDSQEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKE 434
           +   E  +            ++D    +GI    I   ++       +  +     A  +
Sbjct: 6   DYDIEEDKLGIPTVPGKVTLQKDAQNLIGI---SIGGGAQYCPC-LYIVQVFDNTPAALD 61

Query: 435 GCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISR 476
           G +  GDEI  VNG+ ++G T  +   +I      + +  ++
Sbjct: 62  GTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNK 103

>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 93

 Score = 99.6 bits (249), Expect = 2e-25
 Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 6/89 (6%)

Query: 577 HTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQ 636
             +   K     GLGF I+GGK+       I+I  ++  G A   G LK GD++L++NG 
Sbjct: 7   GVVELPKTDE--GLGFNIMGGKEQN---SPIYISRVIPGGVADRHGGLKRGDQLLSVNGV 61

Query: 637 VCHDLTHLEAISLFKTIKNGSISLHICRR 665
                 H +A+ L K  + GS+ L +   
Sbjct: 62  SVEGEQHEKAVELLKAAQ-GSVKLVVRSG 89

>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 93

 Score = 57.3 bits (139), Expect = 1e-10
 Identities = 17/75 (22%), Positives = 38/75 (50%), Gaps = 4/75 (5%)

Query: 402 LGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKS 461
           LG  I       +       ++ ++ GG+A++ G L+ GD+++SVNG  + G    +A  
Sbjct: 18  LGFNIM----GGKEQNSPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEGEQHEKAVE 73

Query: 462 IISSGPLNMDLLISR 476
           ++ +   ++ L++  
Sbjct: 74  LLKAAQGSVKLVVRS 88

>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3, DLG3-human presynaptic protein, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 113

 Score =  100 bits (250), Expect = 2e-25
 Identities = 35/100 (35%), Positives = 47/100 (47%), Gaps = 7/100 (7%)

Query: 566 PRRPRSAICTFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLK 625
             RP         I+  KG    GLGF IVGG+D      GIF+  IL  G A   G L+
Sbjct: 6   SGRPGGDAREPRKIILHKGST--GLGFNIVGGEDGE----GIFVSFILAGGPADLSGELR 59

Query: 626 EGDEILAINGQVCHDLTHLEAISLFKTIKNGSISLHICRR 665
            GD IL++NG    + TH +A +  K     S+++    R
Sbjct: 60  RGDRILSVNGVNLRNATHEQAAAALKRAGQ-SVTIVAQYR 98

>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3, DLG3-human presynaptic protein, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 113

 Score = 58.5 bits (142), Expect = 9e-11
 Identities = 24/100 (24%), Positives = 43/100 (43%), Gaps = 5/100 (5%)

Query: 377 SSENSEDSQEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGC 436
           S  +     + +   ++     +  LG  I   ++       G  V+ I++GG A+  G 
Sbjct: 3   SGSSGRPGGDAREPRKIILHKGSTGLGFNIVGGEDG-----EGIFVSFILAGGPADLSGE 57

Query: 437 LELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISR 476
           L  GD I+SVNG  LR  T  QA + +     ++ ++   
Sbjct: 58  LRRGDRILSVNGVNLRNATHEQAAAALKRAGQSVTIVAQY 97

>2jil_A GRIP1 protein, glutamate receptor interacting protein-1; endoplasmic reticulum, postsynaptic membrane, membrane, MEMB protein; 1.5A {Homo sapiens} Length = 97

 Score = 99.6 bits (249), Expect = 2e-25
 Identities = 25/89 (28%), Positives = 38/89 (42%), Gaps = 4/89 (4%)

Query: 578 TIVFEKGPGKKGLGFTIVGGKDSPRG-AIGIFIKSILDNGQAAEDGRLKEGDEILAINGQ 636
            +   K       GF I GG    R  +  + I S+   G A  +G +K GD +L+++G 
Sbjct: 6   EVTLHKEGN--TFGFVIRGGAHDDRNKSRPVVITSVRPGGPADREGTIKPGDRLLSVDGI 63

Query: 637 VCHDLTHLEAISLFKTIKNGSISLHICRR 665
                TH EA+S+ K       +L I   
Sbjct: 64  RLLGTTHAEAMSILKQCGQ-EAALLIEYD 91

>2jil_A GRIP1 protein, glutamate receptor interacting protein-1; endoplasmic reticulum, postsynaptic membrane, membrane, MEMB protein; 1.5A {Homo sapiens} Length = 97

 Score = 64.6 bits (158), Expect = 4e-13
 Identities = 25/86 (29%), Positives = 37/86 (43%)

Query: 391 VRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQR 450
           V V         G  I    +         V+  +  GG A++EG ++ GD ++SV+G R
Sbjct: 5   VEVTLHKEGNTFGFVIRGGAHDDRNKSRPVVITSVRPGGPADREGTIKPGDRLLSVDGIR 64

Query: 451 LRGLTMTQAKSIISSGPLNMDLLISR 476
           L G T  +A SI+        LLI  
Sbjct: 65  LLGTTHAEAMSILKQCGQEAALLIEY 90

>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide; peptide binding protein; NMR {Drosophila melanogaster} Length = 106

 Score = 99.4 bits (248), Expect = 3e-25
 Identities = 22/89 (24%), Positives = 34/89 (38%), Gaps = 8/89 (8%)

Query: 577 HTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQ 636
             +   K  GK  LG ++   +       G  I  ++       D +L+ GD I   NG 
Sbjct: 4   FNVDLMKKAGK-ELGLSLSPNEI------GCTIADLIQGQYPEIDSKLQRGDIITKFNGD 56

Query: 637 VCHDLTHLEAISLFKTIKNGSISLHICRR 665
               L      +LFK   NG +S+ + R 
Sbjct: 57  ALEGLPFQVCYALFKGA-NGKVSMEVTRP 84

>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide; peptide binding protein; NMR {Drosophila melanogaster} Length = 106

 Score = 59.7 bits (145), Expect = 3e-11
 Identities = 19/86 (22%), Positives = 37/86 (43%), Gaps = 8/86 (9%)

Query: 391 VRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQR 450
           V + ++   +ELG+ ++        N  G  +A ++ G   E +  L+ GD I   NG  
Sbjct: 6   VDLMKKA-GKELGLSLS-------PNEIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDA 57

Query: 451 LRGLTMTQAKSIISSGPLNMDLLISR 476
           L GL      ++       + + ++R
Sbjct: 58  LEGLPFQVCYALFKGANGKVSMEVTR 83

>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti density, glutametergic receptors, carbohydrate metabolism, cycle, cell division; HET: MES; 1.85A {Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A Length = 170

 Score =  100 bits (249), Expect = 1e-24
 Identities = 27/100 (27%), Positives = 46/100 (46%), Gaps = 6/100 (6%)

Query: 568 RPRSAICTFHTIVFEKGPGKKGLGFTIVGGK---DSPRGAIGIFIKSILDNGQAAEDGRL 624
             R        +  EK    +GLG +I+G     D     +GIF+K++ + G A  DGR+
Sbjct: 73  EKRVERLELFPVELEKDS--EGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRI 130

Query: 625 KEGDEILAINGQVCHDLTHLEAISLFKTIKNGSISLHICR 664
           +  D ++ ++G     +T   A S+ +  K G +   I R
Sbjct: 131 QVNDLLVEVDGTSLVGVTQSFAASVLRNTK-GRVRFMIGR 169

>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti density, glutametergic receptors, carbohydrate metabolism, cycle, cell division; HET: MES; 1.85A {Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A Length = 170

 Score = 61.5 bits (149), Expect = 3e-11
 Identities = 28/135 (20%), Positives = 61/135 (45%), Gaps = 6/135 (4%)

Query: 348 RNSGSQSLLEIPAYQNSSDYHSMME----ISELSSENSEDSQEGQTMVRVNRRDFNEELG 403
           +   S + +++ +  ++ DY    E    ++  +    E   E   +  V     +E LG
Sbjct: 35  KIHFSTAPIQVFSTYSNEDYDRRNEDVDPMAASAEYELEKRVERLELFPVELEKDSEGLG 94

Query: 404 IYIAKIKNSSEGNIG--GFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKS 461
           I I  +   ++  +   G  V  +  GG A ++G +++ D ++ V+G  L G+T + A S
Sbjct: 95  ISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAAS 154

Query: 462 IISSGPLNMDLLISR 476
           ++ +    +  +I R
Sbjct: 155 VLRNTKGRVRFMIGR 169

>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer, membrane protein-oxidoreductase CO; 1.90A {Mus musculus} SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A Length = 90

 Score = 97.0 bits (242), Expect = 1e-24
 Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 6/91 (6%)

Query: 577 HTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQ 636
             +   K     GLG +I GG+++    + I I  I     A +   L  GD IL++NG+
Sbjct: 6   RRVTVRKADAG-GLGISIKGGRENK---MPILISKIFKGLAADQTEALFVGDAILSVNGE 61

Query: 637 VCHDLTHLEAISLFKTIKNGSISLHICRRLK 667
                TH EA+   K      + L + + +K
Sbjct: 62  DLSSATHDEAVQALKKTGK-EVVLEV-KYMK 90

>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer, membrane protein-oxidoreductase CO; 1.90A {Mus musculus} SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A Length = 90

 Score = 58.1 bits (141), Expect = 6e-11
 Identities = 23/86 (26%), Positives = 36/86 (41%), Gaps = 5/86 (5%)

Query: 391 VRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQR 450
           V V + D    LGI I         N    +++ I  G  A++   L +GD I+SVNG+ 
Sbjct: 8   VTVRKAD-AGGLGISIK----GGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGED 62

Query: 451 LRGLTMTQAKSIISSGPLNMDLLISR 476
           L   T  +A   +      + L +  
Sbjct: 63  LSSATHDEAVQALKKTGKEVVLEVKY 88

>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural genomics, mouse cDNA, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1 Length = 126

 Score = 98.4 bits (245), Expect = 1e-24
 Identities = 24/122 (19%), Positives = 46/122 (37%), Gaps = 15/122 (12%)

Query: 544 STGSISGDEEETILTSTNFCTLPRRPRSAICTFHTIVFEKGPGKKGLGFTIVGGKDSPRG 603
           S+GS     E+         +  +   S++          G    GLG  ++        
Sbjct: 2   SSGSSGSKNEKE------QLSKAKASVSSLNKVIQTKLTVGN--LGLGLVVIQNGP---- 49

Query: 604 AIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKNGS-ISLHI 662
              + I  +++ G AA DG L+ GD ++++        T  E + L + I  G+ + +  
Sbjct: 50  --YLQISHLINKGAAASDGILQPGDVLISVGHANVLGYTLREFLKLLQNITIGTVLQIKA 107

Query: 663 CR 664
            R
Sbjct: 108 YR 109

>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural genomics, mouse cDNA, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1 Length = 126

 Score = 54.5 bits (131), Expect = 3e-09
 Identities = 18/106 (16%), Positives = 44/106 (41%), Gaps = 6/106 (5%)

Query: 377 SSENSEDSQEGQTMVRVNRRDFNEELGIYIAKIKN----SSEGNIGGFVVAHIVSGGLAE 432
            S  S++ +E  +  + +    N+ +   +             N     ++H+++ G A 
Sbjct: 4   GSSGSKNEKEQLSKAKASVSSLNKVIQTKLTVGNLGLGLVVIQNGPYLQISHLINKGAAA 63

Query: 433 KEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLN--MDLLISR 476
            +G L+ GD +ISV    + G T+ +   ++ +  +   + +   R
Sbjct: 64  SDGILQPGDVLISVGHANVLGYTLREFLKLLQNITIGTVLQIKAYR 109

>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 101

 Score = 97.4 bits (243), Expect = 1e-24
 Identities = 25/95 (26%), Positives = 47/95 (49%), Gaps = 4/95 (4%)

Query: 577 HTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQ 636
             +   +    +GLGF+I GG +     +GI++  +     A ++G L+ GD+IL +N +
Sbjct: 10  RLVSLRRAKAHEGLGFSIRGGSEHG---VGIYVSLVEPGSLAEKEG-LRVGDQILRVNDK 65

Query: 637 VCHDLTHLEAISLFKTIKNGSISLHICRRLKSKKT 671
               +TH EA+   K  K   +S++   R+    +
Sbjct: 66  SLARVTHAEAVKALKGSKKLVLSVYSAGRISGPSS 100

>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 101

 Score = 54.7 bits (132), Expect = 1e-09
 Identities = 29/99 (29%), Positives = 47/99 (47%), Gaps = 5/99 (5%)

Query: 381 SEDSQEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELG 440
           S  S     +V + R   +E LG     I+  SE  +G +V + +  G LAEKEG L +G
Sbjct: 2   SSGSSGEVRLVSLRRAKAHEGLGF---SIRGGSEHGVGIYV-SLVEPGSLAEKEG-LRVG 56

Query: 441 DEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISRTSL 479
           D+I+ VN + L  +T  +A   +      +  + S   +
Sbjct: 57  DQILRVNDKSLARVTHAEAVKALKGSKKLVLSVYSAGRI 95

>3i4w_A Disks large homolog 4; alpha and beta protein, alternative splicing, cell junction, cell membrane, lipoprotein, membrane, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A Length = 104

 Score = 97.0 bits (242), Expect = 2e-24
 Identities = 34/101 (33%), Positives = 50/101 (49%), Gaps = 14/101 (13%)

Query: 565 LPRRPRSAICTFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRL 624
           +PR PR        IV  +G    GLGF IVGG+       GIFI  IL  G A   G L
Sbjct: 8   IPREPR-------RIVIHRGST--GLGFNIVGGEXGE----GIFISFILAGGPADLSGEL 54

Query: 625 KEGDEILAINGQVCHDLTHLEAISLFKTIKNGSISLHICRR 665
           ++GD+IL++NG    + +H +A    K     ++++    +
Sbjct: 55  RKGDQILSVNGVDLRNASHEQAAIALKNAGQ-TVTIIAQYK 94

>3i4w_A Disks large homolog 4; alpha and beta protein, alternative splicing, cell junction, cell membrane, lipoprotein, membrane, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A Length = 104

 Score = 57.7 bits (140), Expect = 2e-10
 Identities = 24/99 (24%), Positives = 41/99 (41%), Gaps = 7/99 (7%)

Query: 378 SENSEDSQEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCL 437
               ED       + ++R      LG  I   +        G  ++ I++GG A+  G L
Sbjct: 2   GLGEEDIPREPRRIVIHRGS--TGLGFNIVGGEXGE-----GIFISFILAGGPADLSGEL 54

Query: 438 ELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISR 476
             GD+I+SVNG  LR  +  QA   + +    + ++   
Sbjct: 55  RKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQY 93

>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex, peptide binding protein; 1.54A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A Length = 119

 Score = 97.1 bits (242), Expect = 3e-24
 Identities = 35/101 (34%), Positives = 51/101 (50%), Gaps = 14/101 (13%)

Query: 565 LPRRPRSAICTFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRL 624
           +PR PR        IV  +G    GLGF IVGG+D      GIFI  IL  G A   G L
Sbjct: 11  IPREPR-------RIVIHRGST--GLGFNIVGGEDGE----GIFISFILAGGPADLSGEL 57

Query: 625 KEGDEILAINGQVCHDLTHLEAISLFKTIKNGSISLHICRR 665
           ++GD+IL++NG    + +H +A    K     ++++    +
Sbjct: 58  RKGDQILSVNGVDLRNASHEQAAIALKNAGQ-TVTIIAQYK 97

>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex, peptide binding protein; 1.54A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A Length = 119

 Score = 57.4 bits (139), Expect = 3e-10
 Identities = 29/126 (23%), Positives = 50/126 (39%), Gaps = 12/126 (9%)

Query: 377 SSENSEDSQEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGC 436
                ED       + ++R   +  LG  I   ++       G  ++ I++GG A+  G 
Sbjct: 4   EFLGEEDIPREPRRIVIHRG--STGLGFNIVGGEDGE-----GIFISFILAGGPADLSGE 56

Query: 437 LELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISRTSLKKSNAENEYNESHSREK 496
           L  GD+I+SVNG  LR  +  QA   + +    + ++           E    E++SR  
Sbjct: 57  LRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQY-----KPEEYSRFEANSRVD 111

Query: 497 KSKETR 502
            S    
Sbjct: 112 SSGRIV 117

>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger, oxidoreductase; 1.25A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1qav_B Length = 112

 Score = 96.4 bits (240), Expect = 4e-24
 Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 5/91 (5%)

Query: 578 TIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQV 637
           ++   K     GLGF +      P     + I  ++  G A + G ++ GD ILA+N + 
Sbjct: 4   SVRLFKRKVG-GLGFLVKERVSKP----PVIISDLIRGGAAEQSGLIQAGDIILAVNDRP 58

Query: 638 CHDLTHLEAISLFKTIKNGSISLHICRRLKS 668
             DL++  A+ + + I + +  + I R  + 
Sbjct: 59  LVDLSYDSALEVLRGIASETHVVLILRGPEG 89

>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger, oxidoreductase; 1.25A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1qav_B Length = 112

 Score = 60.6 bits (147), Expect = 2e-11
 Identities = 21/114 (18%), Positives = 48/114 (42%), Gaps = 8/114 (7%)

Query: 391 VRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQR 450
           VR+ +R     LG  + +  +         +++ ++ GG AE+ G ++ GD I++VN + 
Sbjct: 5   VRLFKRK-VGGLGFLVKERVSK-----PPVIISDLIRGGAAEQSGLIQAGDIILAVNDRP 58

Query: 451 LRGLTMTQAKSIISSGPLNMDLLISRTSLKKSNAENEYNESHSREKKSKETRFS 504
           L  L+   A  ++        +++     +      E   + + +   K  R +
Sbjct: 59  LVDLSYDSALEVLRGIASETHVVLILRGPEGFTTHLE--TTFTGDGTPKTIRVT 110

>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 117

 Score = 96.4 bits (240), Expect = 5e-24
 Identities = 26/99 (26%), Positives = 45/99 (45%), Gaps = 8/99 (8%)

Query: 578 TIVFEKGPGKKGLGFTIVGGKDSPRG------AIGIFIKSILDNGQAAEDGRLKEGDEIL 631
            +   + P    LG +IVGG+   +         GIFIK +L++  A +   LK GD+IL
Sbjct: 18  IVEIFREPNV-SLGISIVGGQTVIKRLKNGEELKGIFIKQVLEDSPAGKTNALKTGDKIL 76

Query: 632 AINGQVCHDLTHLEAISLFKTIKNGSISLHICRRLKSKK 670
            ++G    + +H EA+   K   N  +   +     + +
Sbjct: 77  EVSGVDLQNASHSEAVEAIKNAGN-PVVFIVQSLSSTPR 114

>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 117

 Score = 62.5 bits (152), Expect = 4e-12
 Identities = 21/105 (20%), Positives = 41/105 (39%), Gaps = 5/105 (4%)

Query: 377 SSENSEDSQEGQTMVRVNRRDFNEELGIYIA-----KIKNSSEGNIGGFVVAHIVSGGLA 431
            S     S  G   +    R+ N  LGI I        +  +   + G  +  ++    A
Sbjct: 4   GSSGPNFSHWGPPRIVEIFREPNVSLGISIVGGQTVIKRLKNGEELKGIFIKQVLEDSPA 63

Query: 432 EKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISR 476
            K   L+ GD+I+ V+G  L+  + ++A   I +    +  ++  
Sbjct: 64  GKTNALKTGDKILEVSGVDLQNASHSEAVEAIKNAGNPVVFIVQS 108

>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 114

 Score = 96.0 bits (239), Expect = 7e-24
 Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 6/93 (6%)

Query: 577 HTIVFEKGPGKKGLGFTIVGGKDSPRG----AIGIFIKSILDNGQAAEDGRLKEGDEILA 632
             +V  +   + G GF I+   + P       +   I  I+D   A    +LK GD ILA
Sbjct: 12  SDVVIHRKENE-GFGFVIISSLNRPESGSTITVPHKIGRIIDGSPADRCAKLKVGDRILA 70

Query: 633 INGQVCHDLTHLEAISLFKTIKNGSISLHICRR 665
           +NGQ   ++ H + + L K     S++L I  +
Sbjct: 71  VNGQSIINMPHADIVKLIKDAGL-SVTLRIIPQ 102

>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 114

 Score = 63.2 bits (154), Expect = 2e-12
 Identities = 23/100 (23%), Positives = 42/100 (42%), Gaps = 4/100 (4%)

Query: 380 NSEDSQEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIG---GFVVAHIVSGGLAEKEGC 436
           +        + V ++R++ NE  G  I    N  E          +  I+ G  A++   
Sbjct: 3   SGSSGSLQTSDVVIHRKE-NEGFGFVIISSLNRPESGSTITVPHKIGRIIDGSPADRCAK 61

Query: 437 LELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISR 476
           L++GD I++VNGQ +  +       +I    L++ L I  
Sbjct: 62  LKVGDRILAVNGQSIINMPHADIVKLIKDAGLSVTLRIIP 101

>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 110

 Score = 95.1 bits (237), Expect = 1e-23
 Identities = 28/103 (27%), Positives = 44/103 (42%), Gaps = 7/103 (6%)

Query: 566 PRRPRSAICTFHTIVFEKGPGKKGLGFTIVGGKDSP---RGAIGIFIKSILDNGQAAEDG 622
              P        T+   +  G  GLG +I GGK S        GIFI  + + G AA  G
Sbjct: 6   SGEPARIEEEELTLTILRQTG--GLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAG 63

Query: 623 RLKEGDEILAINGQVCHDLTHLEAISLFKTIKNGSISLHICRR 665
            ++ GD++L +NG       H EA+   +     ++ + + R 
Sbjct: 64  -VRVGDKLLEVNGVALQGAEHHEAVEALRGAGT-AVQMRVWRE 104

>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 110

 Score = 57.4 bits (139), Expect = 2e-10
 Identities = 25/105 (23%), Positives = 47/105 (44%), Gaps = 5/105 (4%)

Query: 374 SELSSENSEDSQEGQTMVRVNRRDFNEELGIYIA--KIKNSSEGNIGGFVVAHIVSGGLA 431
           S  SS      +E +  + + R+     LGI IA  K     +G+  G  ++ +   G A
Sbjct: 2   SSGSSGEPARIEEEELTLTILRQ--TGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPA 59

Query: 432 EKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISR 476
            + G + +GD+++ VNG  L+G    +A   +      + + + R
Sbjct: 60  ARAG-VRVGDKLLEVNGVALQGAEHHEAVEALRGAGTAVQMRVWR 103

>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation, leucine-rich repeat, alternative splicing, cytoplasm, circletail, coiled coil; 1.30A {Homo sapiens} Length = 97

 Score = 93.9 bits (234), Expect = 2e-23
 Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 7/95 (7%)

Query: 577 HTIVFEKGPGKKGLGFTIVGGKDSP---RGAIGIFIKSILDNGQAAEDGRLKEGDEILAI 633
            T+   +  G  GLG +I GGK S        GIFI  + + G AA  G ++ GD++L +
Sbjct: 5   LTLTILRQTG--GLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAG-VRVGDKLLEV 61

Query: 634 NGQVCHDLTHLEAISLFKTIKNGSISLHICRRLKS 668
           NG       H EA+   +     ++ + + R  ++
Sbjct: 62  NGVALQGAEHHEAVEALRGAGT-AVQMRVWRERET 95

>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation, leucine-rich repeat, alternative splicing, cytoplasm, circletail, coiled coil; 1.30A {Homo sapiens} Length = 97

 Score = 54.6 bits (132), Expect = 1e-09
 Identities = 20/77 (25%), Positives = 37/77 (48%), Gaps = 3/77 (3%)

Query: 402 LGIYIA--KIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQA 459
           LGI IA  K     +G+  G  ++ +   G A + G + +GD+++ VNG  L+G    +A
Sbjct: 16  LGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAG-VRVGDKLLEVNGVALQGAEHHEA 74

Query: 460 KSIISSGPLNMDLLISR 476
              +      + + + R
Sbjct: 75  VEALRGAGTAVQMRVWR 91

>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A Length = 196

 Score = 97.5 bits (243), Expect = 2e-23
 Identities = 33/105 (31%), Positives = 53/105 (50%), Gaps = 5/105 (4%)

Query: 567 RRPRSAICTFHTIVFEKGPGKKGLGFTIVGGKDSPR--GAIGIFIKSILDNGQAAEDGRL 624
            R +        I   KGP  KGLGF+I GG  +    G   I++  I++ G A +DGRL
Sbjct: 92  MRRKPPAEKVMEIKLIKGP--KGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRL 149

Query: 625 KEGDEILAINGQVCHDLTHLEAISLFKTIKNGSISLHICRRLKSK 669
           + GD+ILA+N     D+ H +A++  K      + L + +   ++
Sbjct: 150 QIGDKILAVNSVGLEDVMHEDAVAALKNTY-DVVYLKVAKPSNAE 193

>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A Length = 196

 Score = 95.2 bits (237), Expect = 1e-22
 Identities = 33/91 (36%), Positives = 48/91 (52%), Gaps = 5/91 (5%)

Query: 576 FHTIVFEKGPGKKGLGFTIVGGKDSPR--GAIGIFIKSILDNGQAAEDGRLKEGDEILAI 633
           +  I  E+G    GLGF+I GG D+P       IFI  I+  G AA+DGRL+  D IL +
Sbjct: 6   YEEITLERGNS--GLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFV 63

Query: 634 NGQVCHDLTHLEAISLFKTIKNGSISLHICR 664
           N     ++TH  A+   K   +  + L++ R
Sbjct: 64  NEVDVREVTHSAAVEALKEAGS-IVRLYVMR 93

>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A Length = 196

 Score = 65.5 bits (160), Expect = 2e-12
 Identities = 28/123 (22%), Positives = 45/123 (36%), Gaps = 7/123 (5%)

Query: 384 SQEGQTMVRVNRRDFNEELGIYIAKIKNSS-EGNIGGFVVAHIVSGGLAEKEGCLELGDE 442
           S   +       R  N  LG  IA   ++   G+     +  I+ GG A ++G L + D 
Sbjct: 1   SGSMEYEEITLERG-NSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDS 59

Query: 443 IISVNGQRLRGLTMTQAKSIISSGPLNMDLLISRTSLKKSNAENEYNESHSREKKSKETR 502
           I+ VN   +R +T + A   +      + L + R          E        K  K   
Sbjct: 60  ILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRR-----KPPAEKVMEIKLIKGPKGLG 114

Query: 503 FSL 505
           FS+
Sbjct: 115 FSI 117

>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A Length = 196

 Score = 64.4 bits (157), Expect = 5e-12
 Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 1/87 (1%)

Query: 399 NEELGIYIA-KIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMT 457
            + LG  IA  + N          V  I+ GG A K+G L++GD+I++VN   L  +   
Sbjct: 110 PKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHE 169

Query: 458 QAKSIISSGPLNMDLLISRTSLKKSNA 484
            A + + +    + L +++ S  ++ A
Sbjct: 170 DAVAALKNTYDVVYLKVAKPSNAETMA 196

>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing isoform B; GOPC PDZ domain, structural protein; NMR {Homo sapiens} Length = 103

 Score = 93.2 bits (232), Expect = 5e-23
 Identities = 27/89 (30%), Positives = 39/89 (43%), Gaps = 5/89 (5%)

Query: 577 HTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQ 636
             ++  K   + GLG +I GGK+     + I I  I     A   G L  GD ILA+NG 
Sbjct: 11  RKVLLLKEDHE-GLGISITGGKEHG---VPILISEIHPGQPADRCGGLHVGDAILAVNGV 66

Query: 637 VCHDLTHLEAISLFKTIKNGSISLHICRR 665
              D  H EA+++    + G I   +   
Sbjct: 67  NLRDTKHKEAVTILSQQR-GEIEFEVVYV 94

>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing isoform B; GOPC PDZ domain, structural protein; NMR {Homo sapiens} Length = 103

 Score = 65.1 bits (159), Expect = 4e-13
 Identities = 25/107 (23%), Positives = 49/107 (45%), Gaps = 6/107 (5%)

Query: 379 ENSEDSQEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLE 438
           + S+        V + + D +E LGI I       + +    +++ I  G  A++ G L 
Sbjct: 2   KKSQGVGP-IRKVLLLKED-HEGLGISIT----GGKEHGVPILISEIHPGQPADRCGGLH 55

Query: 439 LGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISRTSLKKSNAE 485
           +GD I++VNG  LR     +A +I+S     ++  +   +L+  +  
Sbjct: 56  VGDAILAVNGVNLRDTKHKEAVTILSQQRGEIEFEVVYVALEHHHHH 102

>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS, nitric oxide synthase, oxidoreductase; NMR {Rattus norvegicus} SCOP: b.36.1.1 Length = 127

 Score = 93.8 bits (233), Expect = 6e-23
 Identities = 22/92 (23%), Positives = 42/92 (45%), Gaps = 5/92 (5%)

Query: 577 HTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQ 636
            ++   K     GLGF +      P     + I  ++  G A + G ++ GD ILA+N +
Sbjct: 10  ISVRLFKRKVG-GLGFLVKERVSKP----PVIISDLIRGGAAEQSGLIQAGDIILAVNDR 64

Query: 637 VCHDLTHLEAISLFKTIKNGSISLHICRRLKS 668
              DL++  A+ + + I + +  + I R  + 
Sbjct: 65  PLVDLSYDSALEVLRGIASETHVVLILRGPEG 96

>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS, nitric oxide synthase, oxidoreductase; NMR {Rattus norvegicus} SCOP: b.36.1.1 Length = 127

 Score = 59.5 bits (144), Expect = 6e-11
 Identities = 21/124 (16%), Positives = 48/124 (38%), Gaps = 8/124 (6%)

Query: 381 SEDSQEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELG 440
           S   +     VR+ +R     LG  + +  +         +++ ++ GG AE+ G ++ G
Sbjct: 2   SHMIEPNVISVRLFKRK-VGGLGFLVKERVSK-----PPVIISDLIRGGAAEQSGLIQAG 55

Query: 441 DEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISRTSLKKSNAENEYNESHSREKKSKE 500
           D I++VN + L  L+   A  ++        +++                + + +   K 
Sbjct: 56  DIILAVNDRPLVDLSYDSALEVLRGIASETHVVLILR--GPEGFTTHLETTFTGDGTPKT 113

Query: 501 TRFS 504
            R +
Sbjct: 114 IRVT 117

>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter usage, alternative splicing, cell junction, cell membrane, disease mutation; 1.75A {Homo sapiens} Length = 88

 Score = 92.4 bits (230), Expect = 6e-23
 Identities = 25/93 (26%), Positives = 42/93 (45%), Gaps = 10/93 (10%)

Query: 578 TIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQV 637
            ++  K   +    + +  G         IF+K +   G A +DG L EGD IL ING V
Sbjct: 3   GVLLMKS--RANEEYGLRLGS-------QIFVKEMTRTGLATKDGNLHEGDIILKINGTV 53

Query: 638 CHDLTHLEAISLFKTIKNGSISLHICRRLKSKK 670
             +++  +A  L +  + G + L + R L+   
Sbjct: 54  TENMSLTDARKLIEKSR-GKLQLVVLRDLEHHH 85

>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter usage, alternative splicing, cell junction, cell membrane, disease mutation; 1.75A {Homo sapiens} Length = 88

 Score = 62.0 bits (151), Expect = 3e-12
 Identities = 22/86 (25%), Positives = 38/86 (44%), Gaps = 10/86 (11%)

Query: 391 VRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQR 450
           V + +   NEE G+ +               V  +   GLA K+G L  GD I+ +NG  
Sbjct: 4   VLLMKSRANEEYGLRLGS----------QIFVKEMTRTGLATKDGNLHEGDIILKINGTV 53

Query: 451 LRGLTMTQAKSIISSGPLNMDLLISR 476
              +++T A+ +I      + L++ R
Sbjct: 54  TENMSLTDARKLIEKSRGKLQLVVLR 79

>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein; structural protein-hydrolase complex, peptide binding protei; NMR {Homo sapiens} Length = 112

 Score = 92.1 bits (229), Expect = 1e-22
 Identities = 27/86 (31%), Positives = 39/86 (45%), Gaps = 5/86 (5%)

Query: 577 HTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQ 636
             ++  K   + GLG +I GGK+     + I I  I     A   G L  GD ILA+NG 
Sbjct: 29  RKVLLLKEDHE-GLGISITGGKEHG---VPILISEIHPGQPADRCGGLHVGDAILAVNGV 84

Query: 637 VCHDLTHLEAISLFKTIKNGSISLHI 662
              D  H EA+++    + G I   +
Sbjct: 85  NLRDTKHKEAVTILSQQR-GEIEFEV 109

>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein; structural protein-hydrolase complex, peptide binding protei; NMR {Homo sapiens} Length = 112

 Score = 63.6 bits (155), Expect = 1e-12
 Identities = 29/113 (25%), Positives = 51/113 (45%), Gaps = 7/113 (6%)

Query: 362 QNSSDYHSMMEISELSSENSEDSQEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFV 421
            +   +HS   I     EN     +G   V + + D +E LGI I       + +    +
Sbjct: 4   HHHHHHHSSGHIEGRHMENLYF--QGIRKVLLLKED-HEGLGISIT----GGKEHGVPIL 56

Query: 422 VAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLI 474
           ++ I  G  A++ G L +GD I++VNG  LR     +A +I+S     ++  +
Sbjct: 57  ISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQQRGEIEFEV 109

>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; structural genomi consortium, SGC, ATP-binding, cell junction; 1.60A {Homo sapiens} Length = 88

 Score = 90.8 bits (226), Expect = 2e-22
 Identities = 27/91 (29%), Positives = 41/91 (45%), Gaps = 10/91 (10%)

Query: 576 FHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAING 635
             T+   KGP   G GFTI           G  +K I+D   +     LKEGD I+ +N 
Sbjct: 4   LITVHIVKGP--MGFGFTIADSPGGG----GQRVKQIVD---SPRSRGLKEGDLIVEVNK 54

Query: 636 QVCHDLTHLEAISLFKTIKNGS-ISLHICRR 665
           +    LTH + + +      GS ++L + R+
Sbjct: 55  KNVQALTHNQVVDMLVESPKGSEVTLLVQRQ 85

>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; structural genomi consortium, SGC, ATP-binding, cell junction; 1.60A {Homo sapiens} Length = 88

 Score = 40.0 bits (94), Expect = 2e-04
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 5/61 (8%)

Query: 418 GGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLN--MDLLIS 475
           GG  V  IV      +   L+ GD I+ VN + ++ LT  Q   ++   P    + LL+ 
Sbjct: 27  GGQRVKQIVDSP---RSRGLKEGDLIVEVNKKNVQALTHNQVVDMLVESPKGSEVTLLVQ 83

Query: 476 R 476
           R
Sbjct: 84  R 84

>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A Length = 97

 Score = 90.8 bits (226), Expect = 3e-22
 Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 6/93 (6%)

Query: 577 HTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQ 636
           +T+  ++  G   LG TI G ++       I I S+   G A   G +  GD ILAIN  
Sbjct: 7   YTVELKRYGG--PLGITISGTEEP---FDPIIISSLTKGGLAERTGAIHIGDRILAINSS 61

Query: 637 VCHDLTHLEAISLFKTIKNGSISLHICRRLKSK 669
                   EAI L +     +++L I ++  ++
Sbjct: 62  SLKGKPLSEAIHLLQMAG-ETVTLKIKKQTDAQ 93

>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A Length = 97

 Score = 59.6 bits (145), Expect = 2e-11
 Identities = 20/78 (25%), Positives = 40/78 (51%), Gaps = 4/78 (5%)

Query: 399 NEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQ 458
              LGI I+     +E      +++ +  GGLAE+ G + +GD I+++N   L+G  +++
Sbjct: 15  GGPLGITIS----GTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSE 70

Query: 459 AKSIISSGPLNMDLLISR 476
           A  ++      + L I +
Sbjct: 71  AIHLLQMAGETVTLKIKK 88

>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 103

 Score = 90.6 bits (225), Expect = 4e-22
 Identities = 21/78 (26%), Positives = 31/78 (39%), Gaps = 4/78 (5%)

Query: 575 TFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAIN 634
           +   +  +K      LG  I GG ++ +      I +I   G A   G+LK G  IL +N
Sbjct: 6   SGTLVRVKKSAA--TLGIAIEGGANTRQP--LPRIVTIQRGGSAHNCGQLKVGHVILEVN 61

Query: 635 GQVCHDLTHLEAISLFKT 652
           G       H EA  +   
Sbjct: 62  GLTLRGKEHREAARIIAE 79

>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 103

 Score = 58.6 bits (142), Expect = 7e-11
 Identities = 26/97 (26%), Positives = 39/97 (40%), Gaps = 8/97 (8%)

Query: 385 QEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEII 444
             G +   V  +     LGI I    N+ +       +  I  GG A   G L++G  I+
Sbjct: 2   SSGSSGTLVRVKKSAATLGIAIEGGANTRQPLP---RIVTIQRGGSAHNCGQLKVGHVIL 58

Query: 445 SVNGQRLRGLTMTQAKSIISSGPLN-----MDLLISR 476
            VNG  LRG    +A  II+          +D L++ 
Sbjct: 59  EVNGLTLRGKEHREAARIIAEAFKTKDRDYIDFLVTE 95

>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal peptide complex, high affnity ligand, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A Length = 103

 Score = 90.2 bits (224), Expect = 5e-22
 Identities = 31/97 (31%), Positives = 46/97 (47%), Gaps = 11/97 (11%)

Query: 577 HTIVFEKGPGKKGLGFTIVGGKDSPR-----GAIGIFIKSILDNGQAAEDGRLKEGDEIL 631
             +  EK P    LGF+I GG             GIF+  +   G A     L+ GD+I+
Sbjct: 13  IRVRVEKDPE---LGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPA--SKLLQPGDKII 67

Query: 632 AINGQVCHDLTHLEAISLFKTIKNGSISLHICRRLKS 668
             NG    ++ H +A+SL KT +N ++ L I R + S
Sbjct: 68  QANGYSFINIEHGQAVSLLKTFQN-TVELIIVREVSS 103

>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal peptide complex, high affnity ligand, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A Length = 103

 Score = 54.0 bits (130), Expect = 3e-09
 Identities = 26/103 (25%), Positives = 43/103 (41%), Gaps = 9/103 (8%)

Query: 378 SENSEDSQEGQTMVRVNRRDFNEELGIYIA----KIKNSSEGNIGGFVVAHIVSGGLAEK 433
           S    +  + +  VRV +   + ELG  I+       N    +  G  V  +   G A  
Sbjct: 2   SHMGHELAKQEIRVRVEK---DPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPAS- 57

Query: 434 EGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISR 476
              L+ GD+II  NG     +   QA S++ +    ++L+I R
Sbjct: 58  -KLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIVR 99

>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus} Length = 200

 Score = 93.3 bits (232), Expect = 5e-22
 Identities = 24/101 (23%), Positives = 39/101 (38%), Gaps = 4/101 (3%)

Query: 566 PRRPRSAICTFHTIVFEKGPGKKGLGFTIVGGKD-SPRGAIGIFIKSILDNGQAAEDGRL 624
             +  S +     +   K       GF I GG       +  + I  +   G A  +G +
Sbjct: 97  SIQGSSVMFRTVEVTLHKEGN--TFGFVIRGGAHDDRNKSRPVVITCVRPGGPADREGTI 154

Query: 625 KEGDEILAINGQVCHDLTHLEAISLFKTIKNGSISLHICRR 665
           K GD +L+++G      TH EA+S+ K       +L I   
Sbjct: 155 KPGDRLLSVDGIRLLGTTHAEAMSILKQCGQ-EATLLIEYD 194

>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus} Length = 200

 Score = 85.2 bits (211), Expect = 3e-19
 Identities = 26/89 (29%), Positives = 36/89 (40%), Gaps = 5/89 (5%)

Query: 578 TIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQV 637
            +   K  G   LG T+ GG D         + ++   G AA   +L  GD I A+NG  
Sbjct: 10  VVELMKKEGT-TLGLTVSGGIDKD---GKPRVSNLRQGGIAARSDQLDVGDYIKAVNGIN 65

Query: 638 CHDLTHLEAISLFKTIKNGSISLHICRRL 666
                H E ISL K +    + L +   L
Sbjct: 66  LAKFRHDEIISLLKNVGE-RVVLEVEYEL 93

>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus} Length = 200

 Score = 72.5 bits (178), Expect = 1e-14
 Identities = 29/115 (25%), Positives = 46/115 (40%)

Query: 362 QNSSDYHSMMEISELSSENSEDSQEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFV 421
           +N  +   +    EL   + + S      V V         G  I    +         V
Sbjct: 79  KNVGERVVLEVEYELPPVSIQGSSVMFRTVEVTLHKEGNTFGFVIRGGAHDDRNKSRPVV 138

Query: 422 VAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISR 476
           +  +  GG A++EG ++ GD ++SV+G RL G T  +A SI+        LLI  
Sbjct: 139 ITCVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQCGQEATLLIEY 193

>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus} Length = 200

 Score = 70.5 bits (173), Expect = 5e-14
 Identities = 25/125 (20%), Positives = 50/125 (40%), Gaps = 8/125 (6%)

Query: 384 SQEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEI 443
           S +G T+V + +++    LG+ ++          G   V+++  GG+A +   L++GD I
Sbjct: 4   SFKGSTVVELMKKE-GTTLGLTVS----GGIDKDGKPRVSNLRQGGIAARSDQLDVGDYI 58

Query: 444 ISVNGQRLRGLTMTQAKSIISSGPLNMDLLISRTSLKKSNAENEYNESHSREKKSKETR- 502
            +VNG  L      +  S++ +    + L +       S   +            KE   
Sbjct: 59  KAVNGINLAKFRHDEIISLLKNVGERVVLEVEYELPPVSIQGSSVMFRTVEVTLHKEGNT 118

Query: 503 --FSL 505
             F +
Sbjct: 119 FGFVI 123

>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1 Length = 104

 Score = 90.1 bits (224), Expect = 6e-22
 Identities = 30/83 (36%), Positives = 47/83 (56%), Gaps = 5/83 (6%)

Query: 578 TIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQV 637
            +  +K PG   LGF I GGK S    +GIFI  ++ +  A   G L+EGD++LA+N   
Sbjct: 18  IVTLKKPPGA-QLGFNIRGGKASQ---LGIFISKVIPDSDAHRAG-LQEGDQVLAVNDVD 72

Query: 638 CHDLTHLEAISLFKTIKNGSISL 660
             D+ H +A+ + KT +  S+ +
Sbjct: 73  FQDIEHSKAVEILKTAREISMRV 95

>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1 Length = 104

 Score = 56.6 bits (137), Expect = 3e-10
 Identities = 22/94 (23%), Positives = 44/94 (46%), Gaps = 6/94 (6%)

Query: 374 SELSSENSEDSQEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEK 433
           S  SS N+E +Q    +V + +     +LG  I   K S  G      ++ ++    A +
Sbjct: 2   SSGSSGNNELTQFLPRIVTLKKPP-GAQLGFNIRGGKASQLG----IFISKVIPDSDAHR 56

Query: 434 EGCLELGDEIISVNGQRLRGLTMTQAKSIISSGP 467
            G L+ GD++++VN    + +  ++A  I+ +  
Sbjct: 57  AG-LQEGDQVLAVNDVDFQDIEHSKAVEILKTAR 89

>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex, erbin., signaling protein; 1.25A {Homo sapiens} SCOP: b.36.1.1 PDB: 1mfl_A Length = 95

 Score = 89.4 bits (222), Expect = 9e-22
 Identities = 31/97 (31%), Positives = 46/97 (47%), Gaps = 11/97 (11%)

Query: 577 HTIVFEKGPGKKGLGFTIVGGKDSPR-----GAIGIFIKSILDNGQAAEDGRLKEGDEIL 631
             +  EK P    LGF+I GG             GIF+  +   G A     L+ GD+I+
Sbjct: 5   IRVRVEKDPE---LGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPA--SKLLQPGDKII 59

Query: 632 AINGQVCHDLTHLEAISLFKTIKNGSISLHICRRLKS 668
             NG    ++ H +A+SL KT +N ++ L I R + S
Sbjct: 60  QANGYSFINIEHGQAVSLLKTFQN-TVELIIVREVSS 95

>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex, erbin., signaling protein; 1.25A {Homo sapiens} SCOP: b.36.1.1 PDB: 1mfl_A Length = 95

 Score = 53.6 bits (129), Expect = 3e-09
 Identities = 24/90 (26%), Positives = 38/90 (42%), Gaps = 7/90 (7%)

Query: 391 VRVNRRDFNEELGIYIA----KIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISV 446
           +RV     + ELG  I+       N    +  G  V  +   G A     L+ GD+II  
Sbjct: 5   IRVRVEK-DPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPAS--KLLQPGDKIIQA 61

Query: 447 NGQRLRGLTMTQAKSIISSGPLNMDLLISR 476
           NG     +   QA S++ +    ++L+I R
Sbjct: 62  NGYSFINIEHGQAVSLLKTFQNTVELIIVR 91

>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster} Length = 206

 Score = 92.6 bits (230), Expect = 1e-21
 Identities = 27/90 (30%), Positives = 39/90 (43%), Gaps = 5/90 (5%)

Query: 578 TIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQV 637
            I  +       +G  + GGK++     G  I  +   GQ A D RLK  D I  ING  
Sbjct: 21  LIELKVEKK--PMGVIVCGGKNNHVTT-GCVITHVYPEGQVAADKRLKIFDHICDINGTP 77

Query: 638 CHD--LTHLEAISLFKTIKNGSISLHICRR 665
            H   +T L+   LF T    +++L + R 
Sbjct: 78  IHVGSMTTLKVHQLFHTTYEKAVTLTVFRA 107

>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster} Length = 206

 Score = 90.7 bits (225), Expect = 5e-21
 Identities = 26/137 (18%), Positives = 44/137 (32%), Gaps = 16/137 (11%)

Query: 532 SINNKLLRKAIISTGSISGDEEETILTSTN---FCTLPRRPRSAICTFHTIVFEKGPGKK 588
            IN   +        S++  +   +  +T          R          +   K  GK 
Sbjct: 72  DINGTPIHVG-----SMTTLKVHQLFHTTYEKAVTLTVFRADPPELEKFNVDLMKKAGK- 125

Query: 589 GLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAIS 648
            LG ++   +       G  I  ++       D +L+ GD I   NG     L      +
Sbjct: 126 ELGLSLSPNEI------GCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYA 179

Query: 649 LFKTIKNGSISLHICRR 665
           LFK    G +S+ + R 
Sbjct: 180 LFKGAN-GKVSMEVTRP 195

>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster} Length = 206

 Score = 65.3 bits (159), Expect = 3e-12
 Identities = 24/129 (18%), Positives = 46/129 (35%), Gaps = 11/129 (8%)

Query: 355 LLEIPAYQNSSDYHSMMEISELSSENSEDSQEGQTMVRVNRRDFNEELGIYIAKIKNSSE 414
           + +I    N +  H     +    +    + E    + V R D  E     +  +K + +
Sbjct: 70  ICDI----NGTPIHVGSMTTLKVHQLFHTTYEKAVTLTVFRADPPELEKFNVDLMKKAGK 125

Query: 415 G-------NIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGP 467
                   N  G  +A ++ G   E +  L+ GD I   NG  L GL      ++     
Sbjct: 126 ELGLSLSPNEIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYALFKGAN 185

Query: 468 LNMDLLISR 476
             + + ++R
Sbjct: 186 GKVSMEVTR 194

>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster} Length = 206

 Score = 55.7 bits (134), Expect = 5e-09
 Identities = 15/64 (23%), Positives = 28/64 (43%), Gaps = 2/64 (3%)

Query: 399 NEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQ 458
            + +G+ +   KN+      G V+ H+   G    +  L++ D I  +NG  +   +MT 
Sbjct: 28  KKPMGVIVCGGKNNHVTT--GCVITHVYPEGQVAADKRLKIFDHICDINGTPIHVGSMTT 85

Query: 459 AKSI 462
            K  
Sbjct: 86  LKVH 89

>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score = 89.8 bits (223), Expect = 1e-21
 Identities = 24/92 (26%), Positives = 35/92 (38%), Gaps = 4/92 (4%)

Query: 578 TIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQV 637
            +   K PG   LG ++       +    I I  I         G L  GD IL+I+G  
Sbjct: 18  MVEIVKTPGS-ALGISLTTTSLRNKS--VITIDRIKPASVVDRSGALHPGDHILSIDGTS 74

Query: 638 CHDLTHLEAISLFKTIKNGSISLHICRRLKSK 669
               + LEA  L  +I    + L I    +S+
Sbjct: 75  MEHCSLLEATKLLASIS-EKVRLEILPVPQSQ 105

>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score = 70.2 bits (172), Expect = 8e-15
 Identities = 21/102 (20%), Positives = 44/102 (43%), Gaps = 4/102 (3%)

Query: 377 SSENSEDSQEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGC 436
           SS ++  +  G  MV + +      LGI +      ++  I    +  I    + ++ G 
Sbjct: 5   SSGDTVANASGPLMVEIVKTP-GSALGISLTTTSLRNKSVI---TIDRIKPASVVDRSGA 60

Query: 437 LELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISRTS 478
           L  GD I+S++G  +   ++ +A  +++S    + L I    
Sbjct: 61  LHPGDHILSIDGTSMEHCSLLEATKLLASISEKVRLEILPVP 102

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus} Length = 721

 Score = 98.1 bits (243), Expect = 2e-21
 Identities = 58/284 (20%), Positives = 105/284 (36%), Gaps = 42/284 (14%)

Query: 383 DSQEGQTMVRVNRRDFNEELGIYIAKIKNSSEG-NIGGFVVAHIVSGGLAEKEGCLELGD 441
                + ++ +      + LG  IA    +          V  I+ GG A K+G L++GD
Sbjct: 148 RKPPAEKVMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGD 207

Query: 442 EIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISRTSLKKSNAENEYNESHSREKKSKET 501
           +I++VN   L  +    A + + +    + L +++ S    +      +  +   +  + 
Sbjct: 208 KILAVNSVGLEDVMHEDAVAALKNTYDVVYLKVAKPSNAYLSDSYAPPDITTSYSQHLDN 267

Query: 502 RFSLDKQNDFESSNEQDKNNQKRLFQKNCHSINNKLLRKAIISTGSISGDEEETILTSTN 561
             S       +        + +R        +  +                         
Sbjct: 268 EISHSSYLGTDYPTAMTPTSPRRYSPVAKDLLGEE------------------------- 302

Query: 562 FCTLPRRPRSAICTFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAED 621
              +PR PR        IV  +G    GLGF IVGG+D      GIFI  IL  G A   
Sbjct: 303 --DIPREPR-------RIVIHRGST--GLGFNIVGGEDGE----GIFISFILAGGPADLS 347

Query: 622 GRLKEGDEILAINGQVCHDLTHLEAISLFKTIKNGSISLHICRR 665
           G L++GD+IL++NG    + +H +A    K     ++++    +
Sbjct: 348 GELRKGDQILSVNGVDLRNASHEQAAIALKNAG-QTVTIIAQYK 390

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus} Length = 721

 Score = 85.3 bits (210), Expect = 2e-17
 Identities = 34/93 (36%), Positives = 48/93 (51%), Gaps = 5/93 (5%)

Query: 575 TFHTIVFEKGPGKKGLGFTIVGGKDSPRGA--IGIFIKSILDNGQAAEDGRLKEGDEILA 632
            +  I  E+G    GLGF+I GG D+P       IFI  I+  G AA+DGRL+  D IL 
Sbjct: 59  EYEEITLERGNS--GLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILF 116

Query: 633 INGQVCHDLTHLEAISLFKTIKNGSISLHICRR 665
           +N     ++TH  A+   K      + L++ RR
Sbjct: 117 VNEVDVREVTHSAAVEALKEAG-SIVRLYVMRR 148

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus} Length = 721

 Score = 64.5 bits (156), Expect = 6e-11
 Identities = 26/146 (17%), Positives = 47/146 (32%), Gaps = 2/146 (1%)

Query: 350 SGSQSLLEIPAYQNSSDYHSMMEISELSSENSEDSQEGQTMVRVNRRDFNEELGIYIA-K 408
               S   +P   NS       + +  +      ++       +     N  LG  IA  
Sbjct: 21  PLKHSPAHLPNQANSPPVIVNTD-TLEAPGYVNGTEGEMEYEEITLERGNSGLGFSIAGG 79

Query: 409 IKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPL 468
             N   G+     +  I+ GG A ++G L + D I+ VN   +R +T + A   +     
Sbjct: 80  TDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGS 139

Query: 469 NMDLLISRTSLKKSNAENEYNESHSR 494
            + L + R                 +
Sbjct: 140 IVRLYVMRRKPPAEKVMEIKLIKGPK 165

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus} Length = 721

 Score = 60.3 bits (145), Expect = 1e-09
 Identities = 30/147 (20%), Positives = 58/147 (39%), Gaps = 5/147 (3%)

Query: 352 SQSLLEIPAYQNSSDYHSMMEISELSSENSEDSQEGQTMVRVNRRDFNEELGIYIAKIKN 411
           S S      Y  +    S    S ++ +   +    +   R+     +  LG  I   ++
Sbjct: 270 SHSSYLGTDYPTAMTPTSPRRYSPVAKDLLGEEDIPREPRRIVIHRGSTGLGFNIVGGED 329

Query: 412 SSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMD 471
                  G  ++ I++GG A+  G L  GD+I+SVNG  LR  +  QA   + +    + 
Sbjct: 330 G-----EGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVT 384

Query: 472 LLISRTSLKKSNAENEYNESHSREKKS 498
           ++      + S  E + ++   +   S
Sbjct: 385 IIAQYKPEEYSRFEAKIHDLREQLMNS 411

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus} Length = 721

 Score = 57.2 bits (137), Expect = 1e-08
 Identities = 30/97 (30%), Positives = 49/97 (50%), Gaps = 3/97 (3%)

Query: 570 RSAICTFHTIVFEKGPGKKGLGFTIVGGKDSPR--GAIGIFIKSILDNGQAAEDGRLKEG 627
           R        +  +   G KGLGF+I GG  +    G   I++  I++ G A +DGRL+ G
Sbjct: 147 RRKPPAEKVMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIG 206

Query: 628 DEILAINGQVCHDLTHLEAISLFKTIKNGSISLHICR 664
           D+ILA+N     D+ H +A++  K      + L + +
Sbjct: 207 DKILAVNSVGLEDVMHEDAVAALKNTY-DVVYLKVAK 242

>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction, membrane, phosphorylati domain, protein binding; 1.70A {Homo sapiens} PDB: 2jwe_A 2osg_A Length = 81

 Score = 87.7 bits (218), Expect = 2e-21
 Identities = 23/87 (26%), Positives = 40/87 (45%), Gaps = 10/87 (11%)

Query: 578 TIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQV 637
            +   K    +  G  +            IF+K I  +  AA DG ++EGD +L ING V
Sbjct: 3   KVTLVKSRKNEEYGLRLASH---------IFVKEISQDSLAARDGNIQEGDVVLKINGTV 53

Query: 638 CHDLTHLEAISLFKTIKNGSISLHICR 664
             +++  +A +L +  K G + + + R
Sbjct: 54  TENMSLTDAKTLIERSK-GKLKMVVQR 79

>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction, membrane, phosphorylati domain, protein binding; 1.70A {Homo sapiens} PDB: 2jwe_A 2osg_A Length = 81

 Score = 69.2 bits (170), Expect = 6e-15
 Identities = 20/88 (22%), Positives = 41/88 (46%), Gaps = 10/88 (11%)

Query: 389 TMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNG 448
           + V + +   NEE G+ +A              V  I    LA ++G ++ GD ++ +NG
Sbjct: 2   SKVTLVKSRKNEEYGLRLA----------SHIFVKEISQDSLAARDGNIQEGDVVLKING 51

Query: 449 QRLRGLTMTQAKSIISSGPLNMDLLISR 476
                +++T AK++I      + +++ R
Sbjct: 52  TVTENMSLTDAKTLIERSKGKLKMVVQR 79

>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction, membrane, phosphoprot domain, tight junction, transmembrane; 2.40A {Homo sapiens} Length = 92

 Score = 87.5 bits (217), Expect = 3e-21
 Identities = 23/91 (25%), Positives = 42/91 (46%), Gaps = 10/91 (10%)

Query: 578 TIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQV 637
            +   K    +  G  +            IF+K I  +  AA DG ++EGD +L ING V
Sbjct: 5   KVTLVKSAKNEEYGLRLASH---------IFVKEISQDSLAARDGNIQEGDVVLKINGTV 55

Query: 638 CHDLTHLEAISLFKTIKNGSISLHICRRLKS 668
             +++  +A +L +  K G + + + R  ++
Sbjct: 56  TENMSLTDAKTLIERSK-GKLKMVVQRDERA 85

>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction, membrane, phosphoprot domain, tight junction, transmembrane; 2.40A {Homo sapiens} Length = 92

 Score = 71.3 bits (175), Expect = 1e-15
 Identities = 21/88 (23%), Positives = 41/88 (46%), Gaps = 10/88 (11%)

Query: 389 TMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNG 448
           T V + +   NEE G+ +A              V  I    LA ++G ++ GD ++ +NG
Sbjct: 4   TKVTLVKSAKNEEYGLRLA----------SHIFVKEISQDSLAARDGNIQEGDVVLKING 53

Query: 449 QRLRGLTMTQAKSIISSGPLNMDLLISR 476
                +++T AK++I      + +++ R
Sbjct: 54  TVTENMSLTDAKTLIERSKGKLKMVVQR 81

>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural genomics consortium, SGC; 1.11A {Homo sapiens} Length = 89

 Score = 87.0 bits (216), Expect = 4e-21
 Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 5/84 (5%)

Query: 585 PGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHL 644
            G    GF + GGKD     + + I  +   G+AA+ G +  GD +L+I+G+    LTH+
Sbjct: 10  EGPAPWGFRLQGGKDFN---VPLSISRLTPGGKAAQAG-VAVGDWVLSIDGENAGSLTHI 65

Query: 645 EAISLFKTIKNGSISLHICRRLKS 668
           EA +  +      +SL + R + S
Sbjct: 66  EAQNKIRACGE-RLSLGLSRAITS 88

>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural genomics consortium, SGC; 1.11A {Homo sapiens} Length = 89

 Score = 53.5 bits (129), Expect = 3e-09
 Identities = 15/58 (25%), Positives = 32/58 (55%), Gaps = 1/58 (1%)

Query: 419 GFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISR 476
              ++ +  GG A + G + +GD ++S++G+    LT  +A++ I +    + L +SR
Sbjct: 28  PLSISRLTPGGKAAQAG-VAVGDWVLSIDGENAGSLTHIEAQNKIRACGERLSLGLSR 84

>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3; neuron-specific X11L2 protein, neuronal MUNC18-1-interacting protein 3, MINT-3; NMR {Homo sapiens} Length = 101

 Score = 87.5 bits (217), Expect = 4e-21
 Identities = 24/89 (26%), Positives = 35/89 (39%), Gaps = 3/89 (3%)

Query: 578 TIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQV 637
            +  EK  G+ GLG  +V             I ++L  G A   G L  GD + AING  
Sbjct: 12  EVHLEKRRGE-GLGVALVESGWGSLLP-TAVIANLLHGGPAERSGALSIGDRLTAINGTS 69

Query: 638 CHDLTHLEAISLFKTIKNG-SISLHICRR 665
              L      +  +  K+  S++L I   
Sbjct: 70  LVGLPLAACQAAVRETKSQTSVTLSIVHC 98

>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3; neuron-specific X11L2 protein, neuronal MUNC18-1-interacting protein 3, MINT-3; NMR {Homo sapiens} Length = 101

 Score = 67.1 bits (164), Expect = 7e-14
 Identities = 24/99 (24%), Positives = 49/99 (49%), Gaps = 5/99 (5%)

Query: 381 SEDSQEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELG 440
           S  S +    V + +R   E LG+ +  +++     +   V+A+++ GG AE+ G L +G
Sbjct: 3   SGSSGDNCREVHLEKRR-GEGLGVAL--VESGWGSLLPTAVIANLLHGGPAERSGALSIG 59

Query: 441 DEIISVNGQRLRGLTMTQAKSII--SSGPLNMDLLISRT 477
           D + ++NG  L GL +   ++ +  +    ++ L I   
Sbjct: 60  DRLTAINGTSLVGLPLAACQAAVRETKSQTSVTLSIVHC 98

>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 128

 Score = 88.3 bits (219), Expect = 5e-21
 Identities = 29/94 (30%), Positives = 49/94 (52%), Gaps = 5/94 (5%)

Query: 578 TIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQV 637
            +    G G+  LG TI GG +     +GI+I  +    +A   G LK GD+IL +NG+ 
Sbjct: 23  KVNLVLGDGR-SLGLTIRGGAEY---GLGIYITGVDPGSEAEGSG-LKVGDQILEVNGRS 77

Query: 638 CHDLTHLEAISLFKTIKNGSISLHICRRLKSKKT 671
             ++ H EA+ L K+ ++  +++    RL   +T
Sbjct: 78  FLNILHDEAVRLLKSSRHLILTVKDVGRLPHART 111

>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 128

 Score = 50.2 bits (120), Expect = 9e-08
 Identities = 21/88 (23%), Positives = 40/88 (45%), Gaps = 7/88 (7%)

Query: 390 MVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQ 449
            V +   D    LG+    I+  +E  +G   +  +  G  AE  G L++GD+I+ VNG+
Sbjct: 23  KVNLVLGD-GRSLGL---TIRGGAEYGLG-IYITGVDPGSEAEGSG-LKVGDQILEVNGR 76

Query: 450 RLRGLTMTQAKSIISSGPLNMDLLISRT 477
               +   +A  ++ S   ++ L +   
Sbjct: 77  SFLNILHDEAVRLLKSSR-HLILTVKDV 103

>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A Length = 196

 Score = 89.1 bits (221), Expect = 1e-20
 Identities = 21/100 (21%), Positives = 38/100 (38%), Gaps = 4/100 (4%)

Query: 565 LPRRPRSAICTFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRL 624
           +      +  TFH  + +       LG TI        G   + I  I     A   G L
Sbjct: 98  VAESVIPSSGTFHVKLPK--KHSVELGITISSPSSRKPGD-PLVISDIKKGSVAHRTGTL 154

Query: 625 KEGDEILAINGQVCHDLTHLEAISLFKTIKNGSISLHICR 664
           + GD++LAI+       +  +A+ + +  +   + L I +
Sbjct: 155 ELGDKLLAIDNIRLDSCSMEDAVQILQQCE-DLVKLKIRK 193

>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A Length = 196

 Score = 87.9 bits (218), Expect = 4e-20
 Identities = 21/95 (22%), Positives = 35/95 (36%), Gaps = 3/95 (3%)

Query: 578 TIVFEKGPGKKGLGFTIVGGKDSPR-GAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQ 636
            +V    P   G G  + G   +    +    I  I  +  A   G L+ GD ++AING 
Sbjct: 9   EVVLTADPVT-GFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGI 67

Query: 637 VCHDLTHLEAISLFKTIKNGSISLHICRRLKSKKT 671
              D T  EA  L +     +  + +       ++
Sbjct: 68  PTEDSTFEEANQLLRDSSI-TSKVTLEIEFDVAES 101

>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A Length = 196

 Score = 72.1 bits (177), Expect = 1e-14
 Identities = 19/118 (16%), Positives = 43/118 (36%)

Query: 386 EGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIIS 445
             +T   V   D     GI +     ++E      ++++I +   AE+ G L++GD +++
Sbjct: 4   HTETTEVVLTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMA 63

Query: 446 VNGQRLRGLTMTQAKSIISSGPLNMDLLISRTSLKKSNAENEYNESHSREKKSKETRF 503
           +NG      T  +A  ++    +   + +        +        H +  K      
Sbjct: 64  INGIPTEDSTFEEANQLLRDSSITSKVTLEIEFDVAESVIPSSGTFHVKLPKKHSVEL 121

>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A Length = 196

 Score = 68.6 bits (168), Expect = 2e-13
 Identities = 27/102 (26%), Positives = 49/102 (48%), Gaps = 3/102 (2%)

Query: 375 ELSSENSEDSQEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKE 434
           E     S     G   V++ ++  + ELGI I+   +   G+    V++ I  G +A + 
Sbjct: 95  EFDVAESVIPSSGTFHVKLPKKH-SVELGITISSPSSRKPGD--PLVISDIKKGSVAHRT 151

Query: 435 GCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISR 476
           G LELGD++++++  RL   +M  A  I+      + L I +
Sbjct: 152 GTLELGDKLLAIDNIRLDSCSMEDAVQILQQCEDLVKLKIRK 193

>2edp_A Fragment, shroom family member 4; APX/shroom family member, KIAA1202 protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 85.5 bits (212), Expect = 2e-20
 Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 8/90 (8%)

Query: 576 FHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAING 635
           +  +  + G      GFT+ GG +       + +  I D G+AA   +++ GDE++ ING
Sbjct: 12  YVPVQLQGGAP---WGFTLKGGLEHCEP---LTVSKIEDGGKAALSQKMRTGDELVNING 65

Query: 636 QVCHDLTHLEAISLFKTIKNGSISLHICRR 665
              +  +  EA+ L K      + L + RR
Sbjct: 66  TPLYG-SRQEALILIKGSFR-ILKLIVRRR 93

>2edp_A Fragment, shroom family member 4; APX/shroom family member, KIAA1202 protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 49.3 bits (118), Expect = 1e-07
 Identities = 21/97 (21%), Positives = 36/97 (37%), Gaps = 7/97 (7%)

Query: 380 NSEDSQEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLEL 439
           +       Q  V V  +      G  +       E       V+ I  GG A     +  
Sbjct: 3   SGSSGGSFQY-VPVQLQG-GAPWGFTLKGGLEHCEP----LTVSKIEDGGKAALSQKMRT 56

Query: 440 GDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISR 476
           GDE++++NG  L G +  +A  +I      + L++ R
Sbjct: 57  GDELVNINGTPLYG-SRQEALILIKGSFRILKLIVRR 92

>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 85.5 bits (212), Expect = 2e-20
 Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 7/89 (7%)

Query: 577 HTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQ 636
           H++  EK P    LGF++ GG +     +GIF+  + +   A   G L  GD+I  +NG 
Sbjct: 12  HSVRVEKSPAG-RLGFSVRGGSEH---GLGIFVSKVEEGSSAERAG-LCVGDKITEVNGL 66

Query: 637 VCHDLTHLEAISLFKTIKNGSISLHICRR 665
                T   A+ +     +  + + + R 
Sbjct: 67  SLESTTMGSAVKVLT--SSSRLHMMVRRM 93

>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 57.0 bits (138), Expect = 2e-10
 Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 7/99 (7%)

Query: 380 NSEDSQEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLEL 439
           +     +    VRV +      LG     ++  SE  +G   V+ +  G  AE+ G L +
Sbjct: 3   SGSSGSDIIHSVRVEKSP-AGRLGF---SVRGGSEHGLG-IFVSKVEEGSSAERAG-LCV 56

Query: 440 GDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISRTS 478
           GD+I  VNG  L   TM  A  +++S    + +++ R  
Sbjct: 57  GDKITEVNGLSLESTTMGSAVKVLTSSS-RLHMMVRRMG 94

>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics, structural genomics consort metal binding protein; 1.70A {Homo sapiens} PDB: 3pdv_A Length = 87

 Score = 84.6 bits (210), Expect = 3e-20
 Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 5/80 (6%)

Query: 585 PGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHL 644
            G    GF I GG+D       I +  + + G  A+D  L+ GD I+AING+    + H 
Sbjct: 9   AGPAPWGFRITGGRDFH---TPIMVTKVAERG-KAKDADLRPGDIIVAINGESAEGMLHA 64

Query: 645 EAISLFKTIKNGSISLHICR 664
           EA S  +   +  + L + R
Sbjct: 65  EAQSKIRQSPS-PLRLQLDR 83

>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics, structural genomics consort metal binding protein; 1.70A {Homo sapiens} PDB: 3pdv_A Length = 87

 Score = 55.0 bits (133), Expect = 8e-10
 Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 1/60 (1%)

Query: 419 GFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISRTS 478
             +V  +   G A+    L  GD I+++NG+   G+   +A+S I   P  + L + R +
Sbjct: 27  PIMVTKVAERGKAKDAD-LRPGDIIVAINGESAEGMLHAEAQSKIRQSPSPLRLQLDRIT 85

>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two alpha-helices, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 Length = 91

 Score = 83.9 bits (208), Expect = 5e-20
 Identities = 22/90 (24%), Positives = 34/90 (37%), Gaps = 6/90 (6%)

Query: 576 FHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAING 635
            H +   K  G +  GF++  G        G+++K+I   G     G LK  D +L +N 
Sbjct: 7   LHKVTLYKDSGMEDFGFSVADGLLEK----GVYVKNIRPAGPGDLGG-LKPYDRLLQVNH 61

Query: 636 QVCHDLTHLEAISLFKTIKNGSISLHICRR 665
               D      + L     N  + L I R 
Sbjct: 62  VRTRDFDCCLVVPLIAESGN-KLDLVISRN 90

>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two alpha-helices, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 Length = 91

 Score = 60.4 bits (147), Expect = 1e-11
 Identities = 21/86 (24%), Positives = 34/86 (39%), Gaps = 6/86 (6%)

Query: 391 VRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQR 450
           V + +    E+ G  +A           G  V +I   G  +  G L+  D ++ VN  R
Sbjct: 10  VTLYKDSGMEDFGFSVADGLLEK-----GVYVKNIRPAGPGDLGG-LKPYDRLLQVNHVR 63

Query: 451 LRGLTMTQAKSIISSGPLNMDLLISR 476
            R         +I+     +DL+ISR
Sbjct: 64  TRDFDCCLVVPLIAESGNKLDLVISR 89

>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere, structural protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 1wjl_A Length = 85

 Score = 83.5 bits (207), Expect = 7e-20
 Identities = 23/91 (25%), Positives = 42/91 (46%), Gaps = 8/91 (8%)

Query: 577 HTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQ 636
           +++           GF + GGKD     + + I  I      A   +L +GD ++AI+G 
Sbjct: 3   YSVTLTGPGP---WGFRLQGGKDFN---MPLTISRITPGS-KAAQSQLSQGDLVVAIDGV 55

Query: 637 VCHDLTHLEAISLFKTIKNGSISLHICRRLK 667
               +THLEA +  K+    ++SL + +  +
Sbjct: 56  NTDTMTHLEAQNKIKSASY-NLSLTLQKSKR 85

>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere, structural protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 1wjl_A Length = 85

 Score = 52.6 bits (127), Expect = 5e-09
 Identities = 13/59 (22%), Positives = 29/59 (49%), Gaps = 1/59 (1%)

Query: 419 GFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISRT 477
              ++ I  G  A +   L  GD +++++G     +T  +A++ I S   N+ L + ++
Sbjct: 26  PLTISRITPGSKAAQSQ-LSQGDLVVAIDGVNTDTMTHLEAQNKIKSASYNLSLTLQKS 83

>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog, phosphorylation, signaling PR LIM domain, PDZ domain; 1.5A {Homo sapiens} Length = 88

 Score = 83.5 bits (207), Expect = 7e-20
 Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 6/91 (6%)

Query: 575 TFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAIN 634
           +          G    GF + GGKD       + I S+ D G  A    ++ GD +L+I+
Sbjct: 1   SMSNYSVSL-VGPAPWGFRLQGGKDFNMP---LTISSLKDGG-KAAQANVRIGDVVLSID 55

Query: 635 GQVCHDLTHLEAISLFKTIKNGSISLHICRR 665
           G     +THLEA +  K     S+++ + R 
Sbjct: 56  GINAQGMTHLEAQNKIKGCTG-SLNMTLQRE 85

>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog, phosphorylation, signaling PR LIM domain, PDZ domain; 1.5A {Homo sapiens} Length = 88

 Score = 53.4 bits (129), Expect = 3e-09
 Identities = 13/60 (21%), Positives = 33/60 (55%), Gaps = 1/60 (1%)

Query: 419 GFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISRTS 478
              ++ +  GG A +   + +GD ++S++G   +G+T  +A++ I     ++++ + R S
Sbjct: 28  PLTISSLKDGGKAAQAN-VRIGDVVLSIDGINAQGMTHLEAQNKIKGCTGSLNMTLQRES 86

>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase binding domain, signaling protein; HET: GNP; 2.10A {Mus musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A 2lc7_A 1rzx_A Length = 128

 Score = 84.9 bits (210), Expect = 9e-20
 Identities = 20/91 (21%), Positives = 33/91 (36%), Gaps = 7/91 (7%)

Query: 578 TIVFEKGPGKKGLGFTIVGGKDSPRGAI------GIFIKSILDNGQAAEDGRLKEGDEIL 631
            +   K   +K LGF I  G              GIFI  ++  G A   G L   DE+L
Sbjct: 32  RVRLCKYGTEKPLGFYIRDGSSVRVTPHGLEKVPGIFISRLVPGGLAQSTGLLAVNDEVL 91

Query: 632 AINGQVCHDLTHLEAISLFKTIKNGSISLHI 662
            +NG      +  +   +       ++ + +
Sbjct: 92  EVNGIEVSGKSLDQVTDMMIANS-RNLIITV 121

>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase binding domain, signaling protein; HET: GNP; 2.10A {Mus musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A 2lc7_A 1rzx_A Length = 128

 Score = 69.5 bits (170), Expect = 2e-14
 Identities = 24/110 (21%), Positives = 49/110 (44%), Gaps = 5/110 (4%)

Query: 374 SELSSENSEDSQEGQTMVRVNRRDFNEELGIYIA-----KIKNSSEGNIGGFVVAHIVSG 428
              S  + +   E    VR+ +    + LG YI      ++       + G  ++ +V G
Sbjct: 16  PVSSIIDVDILPETHRRVRLCKYGTEKPLGFYIRDGSSVRVTPHGLEKVPGIFISRLVPG 75

Query: 429 GLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISRTS 478
           GLA+  G L + DE++ VNG  + G ++ Q   ++ +   N+ + +   +
Sbjct: 76  GLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVTDMMIANSRNLIITVRPAN 125

>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion; 1.99A {Homo sapiens} PDB: 3shu_A Length = 124

 Score = 84.1 bits (208), Expect = 1e-19
 Identities = 24/90 (26%), Positives = 46/90 (51%), Gaps = 10/90 (11%)

Query: 577 HTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQ 636
             + F KG     +G  + GG D     +GIF+  +L++  AA++G L+EGD+IL +N  
Sbjct: 31  KLVKFRKG---DSVGLRLAGGND-----VGIFVAGVLEDSPAAKEG-LEEGDQILRVNNV 81

Query: 637 VCHDLTHLEAISLFKTIKNGS-ISLHICRR 665
              ++   EA+     +  G  +++   ++
Sbjct: 82  DFTNIIREEAVLFLLDLPKGEEVTILAQKK 111

>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion; 1.99A {Homo sapiens} PDB: 3shu_A Length = 124

 Score = 56.4 bits (136), Expect = 8e-10
 Identities = 24/111 (21%), Positives = 45/111 (40%), Gaps = 7/111 (6%)

Query: 364 SSDYHSMMEISELSSENSEDSQEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVA 423
           SS +H         +   +     +  +++ +    + +G+ +A       GN  G  VA
Sbjct: 3   SSHHHHHHSSGGTENLYFQGHMILRPSMKLVKFRKGDSVGLRLAG------GNDVGIFVA 56

Query: 424 HIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLI 474
            ++    A KEG LE GD+I+ VN      +   +A   +   P   ++ I
Sbjct: 57  GVLEDSPAAKEG-LEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTI 106

>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics, KIAA0705 protein; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 96

 Score = 82.4 bits (204), Expect = 2e-19
 Identities = 29/90 (32%), Positives = 38/90 (42%), Gaps = 11/90 (12%)

Query: 576 FHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAING 635
             T+   KG   +G GFTI           G  +K ILD         L EGD I+ IN 
Sbjct: 11  LMTLTIVKGA--QGFGFTIADSPT------GQRVKQILDIQGCP---GLCEGDLIVEINQ 59

Query: 636 QVCHDLTHLEAISLFKTIKNGSISLHICRR 665
           Q   +L+H E + + K    GS +  I  R
Sbjct: 60  QNVQNLSHTEVVDILKDCPIGSETSLIIHR 89

>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics, KIAA0705 protein; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 96

 Score = 42.4 bits (100), Expect = 2e-05
 Identities = 21/83 (25%), Positives = 32/83 (38%), Gaps = 12/83 (14%)

Query: 402 LGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKS 461
            G  IA        +  G  V  I+          L  GD I+ +N Q ++ L+ T+   
Sbjct: 23  FGFTIA-------DSPTGQRVKQILDIQGC---PGLCEGDLIVEINQQNVQNLSHTEVVD 72

Query: 462 IISSGPLN--MDLLISRTSLKKS 482
           I+   P+     L+I R S   S
Sbjct: 73  ILKDCPIGSETSLIIHRGSGPSS 95

>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune enteropathy-related antigen AIE-75 ,antigen NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2kbs_A Length = 114

 Score = 82.9 bits (205), Expect = 3e-19
 Identities = 26/92 (28%), Positives = 45/92 (48%), Gaps = 5/92 (5%)

Query: 569 PRSAICTFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGD 628
           P +       +       + GLG +I  G        GIFI  +     +AE G L+ GD
Sbjct: 9   PGNRENKEKKVFISLVGSR-GLGCSISSGPIQ---KPGIFISHVKPGSLSAEVG-LEIGD 63

Query: 629 EILAINGQVCHDLTHLEAISLFKTIKNGSISL 660
           +I+ +NG    +L H EA+++ K+ ++ +IS+
Sbjct: 64  QIVEVNGVDFSNLDHKEAVNVLKSSRSLTISI 95

>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune enteropathy-related antigen AIE-75 ,antigen NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2kbs_A Length = 114

 Score = 55.6 bits (134), Expect = 1e-09
 Identities = 24/114 (21%), Positives = 49/114 (42%), Gaps = 6/114 (5%)

Query: 374 SELSSENSEDSQEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEK 433
           S  SS +  + +  +  V ++    +  LG  I+    S      G  ++H+  G L+ +
Sbjct: 2   SSGSSGSPGNRENKEKKVFISLVG-SRGLGCSIS----SGPIQKPGIFISHVKPGSLSAE 56

Query: 434 EGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISRTSLKKSNAENE 487
            G LE+GD+I+ VNG     L   +A +++ S       +++    +    +  
Sbjct: 57  VG-LEIGDQIVEVNGVDFSNLDHKEAVNVLKSSRSLTISIVAAAGRELFMTDRS 109

>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1 Length = 94

 Score = 81.6 bits (202), Expect = 4e-19
 Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 5/81 (6%)

Query: 585 PGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHL 644
            G    GF I GG+D       I +  + + G+A     L+ GD I+AINGQ   ++ H 
Sbjct: 13  AGPAPWGFRISGGRDFHTP---IIVTKVTERGKAEAAD-LRPGDIIVAINGQSAENMLHA 68

Query: 645 EAISLFKTIKNGSISLHICRR 665
           EA S  +   +  + L + R 
Sbjct: 69  EAQSKIRQSAS-PLRLQLDRS 88

>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1 Length = 94

 Score = 53.1 bits (128), Expect = 4e-09
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 1/60 (1%)

Query: 419 GFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISRTS 478
             +V  +   G AE    L  GD I+++NGQ    +   +A+S I      + L + R+S
Sbjct: 31  PIIVTKVTERGKAEAAD-LRPGDIIVAINGQSAENMLHAEAQSKIRQSASPLRLQLDRSS 89

>3gge_A PDZ domain-containing protein GIPC2; structural genomics, structural genomics consort protein binding; 2.60A {Homo sapiens} Length = 95

 Score = 81.3 bits (201), Expect = 5e-19
 Identities = 22/92 (23%), Positives = 31/92 (33%), Gaps = 8/92 (8%)

Query: 578 TIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQV 637
            +   K      LG TI             FIK I D G       +  GD I +ING+ 
Sbjct: 8   EVNVYKSED--SLGLTITDNGVGY-----AFIKRIKDGGVIDSVKTICVGDHIESINGEN 60

Query: 638 CHDLTHLEAISLFKTIKNG-SISLHICRRLKS 668
                H +     K +K     ++ +    KS
Sbjct: 61  IVGWRHYDVAKKLKELKKEELFTMKLIEPKKS 92

>3gge_A PDZ domain-containing protein GIPC2; structural genomics, structural genomics consort protein binding; 2.60A {Homo sapiens} Length = 95

 Score = 50.9 bits (122), Expect = 3e-08
 Identities = 15/69 (21%), Positives = 27/69 (39%), Gaps = 6/69 (8%)

Query: 399 NEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQ 458
            + LG+ I     +  G  G   +  I  GG+ +    + +GD I S+NG+ + G     
Sbjct: 15  EDSLGLTI-----TDNGV-GYAFIKRIKDGGVIDSVKTICVGDHIESINGENIVGWRHYD 68

Query: 459 AKSIISSGP 467
               +    
Sbjct: 69  VAKKLKELK 77

>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 94

 Score = 81.2 bits (201), Expect = 6e-19
 Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 8/88 (9%)

Query: 577 HTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQ 636
           H++           GF +VGG+D       + I  +    +AA    L  GD I AING+
Sbjct: 10  HSVTLRGPSP---WGFRLVGGRDFS---APLTISRVHAGSKAALAA-LCPGDLIQAINGE 62

Query: 637 VCHDLTHLEAISLFKTIKNGSISLHICR 664
               +THLEA +  K   +  ++L +  
Sbjct: 63  STELMTHLEAQNRIKGCHD-HLTLSVSS 89

>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 94

 Score = 53.0 bits (128), Expect = 4e-09
 Identities = 13/58 (22%), Positives = 27/58 (46%), Gaps = 1/58 (1%)

Query: 419 GFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISR 476
              ++ + +G  A     L  GD I ++NG+    +T  +A++ I     ++ L +S 
Sbjct: 33  PLTISRVHAGSKAALAA-LCPGDLIQAINGESTELMTHLEAQNRIKGCHDHLTLSVSS 89

>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled coil, deafness, hearing, non-syndromic deafness, polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A Length = 192

 Score = 84.2 bits (208), Expect = 6e-19
 Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 7/90 (7%)

Query: 576 FHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAING 635
              +  ++    +GLG ++ GG +      G+FI  ++  GQA   G L+ GDEI+ ING
Sbjct: 85  LKEVRLDR-LHPEGLGLSVRGGLEFG---CGLFISHLIKGGQADSVG-LQVGDEIVRING 139

Query: 636 QVCHDLTHLEAISLFKTIKNGSISLHICRR 665
                 TH E I+L +T    ++S+ +   
Sbjct: 140 YSISSCTHEEVINLIRT--EKTVSIKVRHI 167

>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled coil, deafness, hearing, non-syndromic deafness, polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A Length = 192

 Score = 57.3 bits (138), Expect = 1e-09
 Identities = 27/121 (22%), Positives = 54/121 (44%), Gaps = 8/121 (6%)

Query: 359 PAYQNSSDYHSMMEISELSSENSEDSQEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIG 418
           P +        +    E        S++ +  VR++R    E LG+    ++   E   G
Sbjct: 57  PLFDAIRPLIPLKHQVEYDQLTPRRSRKLKE-VRLDRLH-PEGLGL---SVRGGLEFGCG 111

Query: 419 GFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISRTS 478
            F+ +H++ GG A+  G L++GDEI+ +NG  +   T  +  ++I +    + + +    
Sbjct: 112 LFI-SHLIKGGQADSVG-LQVGDEIVRINGYSISSCTHEEVINLIRTEK-TVSIKVRHIG 168

Query: 479 L 479
           L
Sbjct: 169 L 169

>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A 2ocs_A Length = 91

 Score = 80.4 bits (199), Expect = 1e-18
 Identities = 25/105 (23%), Positives = 41/105 (39%), Gaps = 19/105 (18%)

Query: 568 RPRSAICTFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEG 627
            PR           EKGP   G GF + G K       G +I+ +      AE   L  G
Sbjct: 3   LPR-------LCCLEKGP--NGYGFHLHGEKGKL----GQYIRLVEPGS-PAEKAGLLAG 48

Query: 628 DEILAINGQVCHDLTHLEAISLFKTIKNG--SISLHICRRLKSKK 670
           D ++ +NG+     TH + +S    I+    ++ L +      ++
Sbjct: 49  DRLVEVNGENVEKETHQQVVSR---IRAALNAVRLLVVDPETDEQ 90

>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A 2ocs_A Length = 91

 Score = 49.6 bits (119), Expect = 8e-08
 Identities = 20/86 (23%), Positives = 36/86 (41%), Gaps = 8/86 (9%)

Query: 391 VRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQR 450
             + +       G ++       +G +G ++   +  G  AEK G L  GD ++ VNG+ 
Sbjct: 7   CCLEKGP--NGYGFHLH----GEKGKLGQYI-RLVEPGSPAEKAG-LLAGDRLVEVNGEN 58

Query: 451 LRGLTMTQAKSIISSGPLNMDLLISR 476
           +   T  Q  S I +    + LL+  
Sbjct: 59  VEKETHQQVVSRIRAALNAVRLLVVD 84

>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics, structural genomics consort unknown function; HET: PG4; 1.50A {Homo sapiens} PDB: 2v1w_A* Length = 91

 Score = 80.1 bits (198), Expect = 1e-18
 Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 5/81 (6%)

Query: 585 PGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHL 644
            G    GF +VGGKD       + I  +      A    L  GD I AI+G+   ++THL
Sbjct: 10  QGPGPWGFRLVGGKDFE---QPLAISRVTPGS-KAALANLCIGDVITAIDGENTSNMTHL 65

Query: 645 EAISLFKTIKNGSISLHICRR 665
           EA +  K   + +++L + R 
Sbjct: 66  EAQNRIKGCTD-NLTLTVARS 85

>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics, structural genomics consort unknown function; HET: PG4; 1.50A {Homo sapiens} PDB: 2v1w_A* Length = 91

 Score = 50.4 bits (121), Expect = 3e-08
 Identities = 15/90 (16%), Positives = 38/90 (42%), Gaps = 6/90 (6%)

Query: 389 TMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNG 448
           T  +++ +      G    ++    +       ++ +  G  A     L +GD I +++G
Sbjct: 3   TTQQIDLQG-PGPWGF---RLVGGKDFEQP-LAISRVTPGSKAALAN-LCIGDVITAIDG 56

Query: 449 QRLRGLTMTQAKSIISSGPLNMDLLISRTS 478
           +    +T  +A++ I     N+ L ++R+ 
Sbjct: 57  ENTSNMTHLEAQNRIKGCTDNLTLTVARSE 86

>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding, nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens} PDB: 3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A Length = 139

 Score = 81.6 bits (201), Expect = 1e-18
 Identities = 24/100 (24%), Positives = 40/100 (40%), Gaps = 12/100 (12%)

Query: 577 HTIVFEKGP--GKKGLGFTIVGGKDSP---------RGAIGIFIKSILDNGQAAEDGRLK 625
             +   K        LGF+I GG D           +   GI++  + + G A   G L+
Sbjct: 25  QRVEIHKLRQGENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAG-LQ 83

Query: 626 EGDEILAINGQVCHDLTHLEAISLFKTIKNGSISLHICRR 665
            GD+I+ +NG     +TH +A           + L + R+
Sbjct: 84  IGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLLVTRQ 123

>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding, nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens} PDB: 3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A Length = 139

 Score = 55.8 bits (134), Expect = 1e-09
 Identities = 32/139 (23%), Positives = 59/139 (42%), Gaps = 12/139 (8%)

Query: 364 SSDYHSMMEISELSSENSEDSQEGQTMVRVNRRDFNEELGIYIA---------KIKNSSE 414
              +H    +   +      S   +  +   R+  N  LG  I             +  +
Sbjct: 2   HHHHHHSSGVDLGTENLYFQSMVQRVEIHKLRQGENLILGFSIGGGIDQDPSQNPFSEDK 61

Query: 415 GNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQA-KSIISSGPLNMDLL 473
            + G +V   +  GG AE  G L++GD+I+ VNG  +  +T  QA K +       + LL
Sbjct: 62  TDKGIYV-TRVSEGGPAEIAG-LQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLL 119

Query: 474 ISRTSLKKSNAENEYNESH 492
           ++R SL+K+  ++  +E+ 
Sbjct: 120 VTRQSLQKAVQQSMLSETE 138

>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1 Length = 103

 Score = 80.5 bits (199), Expect = 1e-18
 Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 5/81 (6%)

Query: 585 PGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHL 644
            G    GF + GGKD       + I S+ D G  A    ++ GD +L+I+G     +THL
Sbjct: 12  VGPAPWGFRLQGGKDFNMP---LTISSLKDGG-KASQAHVRIGDVVLSIDGISAQGMTHL 67

Query: 645 EAISLFKTIKNGSISLHICRR 665
           EA +  K     S+++ + R 
Sbjct: 68  EAQNKIKACTG-SLNMTLQRA 87

>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1 Length = 103

 Score = 53.9 bits (130), Expect = 3e-09
 Identities = 13/60 (21%), Positives = 34/60 (56%), Gaps = 1/60 (1%)

Query: 419 GFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISRTS 478
              ++ +  GG A +   + +GD ++S++G   +G+T  +A++ I +   ++++ + R S
Sbjct: 30  PLTISSLKDGGKASQAH-VRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMTLQRAS 88

>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ domain, cytoskeleton, actin binding, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1 Length = 103

 Score = 79.7 bits (197), Expect = 2e-18
 Identities = 25/81 (30%), Positives = 32/81 (39%), Gaps = 5/81 (6%)

Query: 585 PGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHL 644
           PG    GF + GG D  +    + I  I      A    L  GD ILAI+G     +TH 
Sbjct: 12  PGPAPWGFRLSGGIDFNQP---LVITRITPGS-KAAAANLCPGDVILAIDGFGTESMTHA 67

Query: 645 EAISLFKTIKNGSISLHICRR 665
           +A    K      + L I R 
Sbjct: 68  DAQDRIKAASY-QLCLKIDRA 87

>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ domain, cytoskeleton, actin binding, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1 Length = 103

 Score = 52.4 bits (126), Expect = 9e-09
 Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 1/58 (1%)

Query: 419 GFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISR 476
             V+  I  G  A     L  GD I++++G     +T   A+  I +    + L I R
Sbjct: 30  PLVITRITPGSKAAAAN-LCPGDVILAIDGFGTESMTHADAQDRIKAASYQLCLKIDR 86

>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L homolog; PDZ domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1 Length = 122

 Score = 80.3 bits (198), Expect = 3e-18
 Identities = 21/77 (27%), Positives = 30/77 (38%), Gaps = 2/77 (2%)

Query: 577 HTIVFEKGPGKKGLGFTIVGGKDSPRG-AIGIFIKSILDNGQAAEDGRLKEGDEILAING 635
             +V    P   G G  + G   +    +    I  I  +  A   G L+ GD ++AING
Sbjct: 17  TEVVLTADPVT-GFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAING 75

Query: 636 QVCHDLTHLEAISLFKT 652
               D T  EA  L + 
Sbjct: 76  IPTEDSTFEEANQLLRD 92

>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L homolog; PDZ domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1 Length = 122

 Score = 66.4 bits (162), Expect = 2e-13
 Identities = 18/100 (18%), Positives = 41/100 (41%)

Query: 377 SSENSEDSQEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGC 436
            S  +      +T   V   D     GI +     ++E      ++++I +   AE+ G 
Sbjct: 4   GSSGAGQVVHTETTEVVLTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGV 63

Query: 437 LELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISR 476
           L++GD ++++NG      T  +A  ++    +   + +  
Sbjct: 64  LQIGDRVMAINGIPTEDSTFEEANQLLRDSSITSKVTLEI 103

>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 79.3 bits (196), Expect = 3e-18
 Identities = 22/94 (23%), Positives = 42/94 (44%), Gaps = 10/94 (10%)

Query: 577 HTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQ 636
           HT+  +K    +  GF I            + + ++   G A   G+L  GD+IL +N +
Sbjct: 10  HTVKIDKDTLLQDYGFHISESL-------PLTVVAVTAGGSA--HGKLFPGDQILQMNNE 60

Query: 637 VCHDLTHLEAISLFKTIKNGSISLHICRRLKSKK 670
              DL+   A+ + +  ++ S+S+ + R   S  
Sbjct: 61  PAEDLSWERAVDILREAED-SLSITVVRCTSSGP 93

>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 50.8 bits (122), Expect = 3e-08
 Identities = 21/98 (21%), Positives = 45/98 (45%), Gaps = 10/98 (10%)

Query: 381 SEDSQEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELG 440
           S  S   +  V++++    ++ G +I         ++   VVA + +GG A   G L  G
Sbjct: 2   SSGSSGVRHTVKIDKDTLLQDYGFHI-------SESLPLTVVA-VTAGGSAH--GKLFPG 51

Query: 441 DEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISRTS 478
           D+I+ +N +    L+  +A  I+     ++ + + R +
Sbjct: 52  DQILQMNNEPAEDLSWERAVDILREAEDSLSITVVRCT 89

>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain, ptpase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 119

 Score = 79.9 bits (197), Expect = 3e-18
 Identities = 20/99 (20%), Positives = 36/99 (36%), Gaps = 8/99 (8%)

Query: 577 HTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAE-DGRLKEGDEILAING 635
             I  +        GF + GG D     + + +  +     A     RL EGD+++ ING
Sbjct: 17  VLIRMKPDENG-RFGFNVKGGYDQK---MPVIVSRVAPGTPADLCVPRLNEGDQVVLING 72

Query: 636 QVCHDLTHLEAISLFKT---IKNGSISLHICRRLKSKKT 671
           +   + TH + +   K      +G + L +         
Sbjct: 73  RDIAEHTHDQVVLFIKASCERHSGELMLLVRPNAVYDVV 111

>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain, ptpase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 119

 Score = 58.0 bits (140), Expect = 2e-10
 Identities = 23/117 (19%), Positives = 46/117 (39%), Gaps = 10/117 (8%)

Query: 374 SELSSENSEDSQEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEK 433
           S  SS N     +   ++R+ + D N   G     +K   +  +   +V+ +  G  A+ 
Sbjct: 2   SSGSSGNGGIPHDNLVLIRM-KPDENGRFGF---NVKGGYDQKMP-VIVSRVAPGTPADL 56

Query: 434 -EGCLELGDEIISVNGQRLRGLTMTQAKSIISSGP----LNMDLLISRTSLKKSNAE 485
               L  GD+++ +NG+ +   T  Q    I +        + LL+   ++     E
Sbjct: 57  CVPRLNEGDQVVLINGRDIAEHTHDQVVLFIKASCERHSGELMLLVRPNAVYDVVEE 113

>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain, adaptor protein, SR-BI, signaling protein; 1.30A {Mus musculus} PDB: 3r69_A* Length = 95

 Score = 78.9 bits (195), Expect = 3e-18
 Identities = 27/102 (26%), Positives = 42/102 (41%), Gaps = 19/102 (18%)

Query: 566 PRRPRSAICTFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLK 625
           P +PR        +V +KG    G GF +  G +      G  IK I     A   G LK
Sbjct: 3   PHQPR-------VVVIKKGS--NGYGFYLRAGPEQK----GQIIKDIEPGSPAEAAG-LK 48

Query: 626 EGDEILAINGQVCHDLTHLEAISLFKTIKNG--SISLHICRR 665
             D ++A+NG+    L H   + +   I+ G    +L +  +
Sbjct: 49  NNDLVVAVNGKSVEALDHDGVVEM---IRKGGDQTTLLVLDK 87

>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain, adaptor protein, SR-BI, signaling protein; 1.30A {Mus musculus} PDB: 3r69_A* Length = 95

 Score = 45.0 bits (107), Expect = 3e-06
 Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 1/57 (1%)

Query: 418 GGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLI 474
            G ++  I  G  AE  G L+  D +++VNG+ +  L       +I  G     LL+
Sbjct: 29  KGQIIKDIEPGSPAEAAG-LKNNDLVVAVNGKSVEALDHDGVVEMIRKGGDQTTLLV 84

>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding site complex, protein binding; 1.43A {Homo sapiens} PDB: 3nfl_A 2vph_A Length = 107

 Score = 79.1 bits (195), Expect = 5e-18
 Identities = 18/77 (23%), Positives = 31/77 (40%), Gaps = 5/77 (6%)

Query: 577 HTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAE-DGRLKEGDEILAING 635
             I  +        GF + GG D     + + +  +     A     RL EGD+++ ING
Sbjct: 19  VLIRMKPDENG-RFGFNVKGGYDQ---KMPVIVSRVAPGTPADLCVPRLNEGDQVVLING 74

Query: 636 QVCHDLTHLEAISLFKT 652
           +   + TH + +   K 
Sbjct: 75  RDIAEHTHDQVVLFIKA 91

>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding site complex, protein binding; 1.43A {Homo sapiens} PDB: 3nfl_A 2vph_A Length = 107

 Score = 57.5 bits (139), Expect = 2e-10
 Identities = 17/104 (16%), Positives = 36/104 (34%), Gaps = 6/104 (5%)

Query: 375 ELSSENSEDSQEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEK- 433
           E  + N     +   ++R+ + D N   G  +              +V+ +  G  A+  
Sbjct: 5   EKPTPNGGIPHDNLVLIRM-KPDENGRFGFNVK----GGYDQKMPVIVSRVAPGTPADLC 59

Query: 434 EGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISRT 477
              L  GD+++ +NG+ +   T  Q    I +        +   
Sbjct: 60  VPRLNEGDQVVLINGRDIAEHTHDQVVLFIKASCERHSGELMLL 103

>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics consortium, SGC, protein BIN; 1.30A {Homo sapiens} Length = 93

 Score = 78.2 bits (193), Expect = 7e-18
 Identities = 22/85 (25%), Positives = 33/85 (38%), Gaps = 7/85 (8%)

Query: 578 TIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQV 637
            I   K      LG TI   + +      I +  I+  G A   G +  GDE+  +NG  
Sbjct: 7   IIRLVKNRE--PLGATIKKDEQTG----AIIVARIMRGGAADRSGLIHVGDELREVNGIP 60

Query: 638 CHDLTHLEAISLFKTIKNGSISLHI 662
             D    E I +    + G+I+  I
Sbjct: 61  VEDKRPEEIIQILAQSQ-GAITFKI 84

>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics consortium, SGC, protein BIN; 1.30A {Homo sapiens} Length = 93

 Score = 62.4 bits (152), Expect = 3e-12
 Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 7/86 (8%)

Query: 389 TMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNG 448
            ++R+ +    E LG  I K + +     G  +VA I+ GG A++ G + +GDE+  VNG
Sbjct: 6   KIIRLVKN--REPLGATIKKDEQT-----GAIIVARIMRGGAADRSGLIHVGDELREVNG 58

Query: 449 QRLRGLTMTQAKSIISSGPLNMDLLI 474
             +      +   I++     +   I
Sbjct: 59  IPVEDKRPEEIIQILAQSQGAITFKI 84

>2eaq_A LIM domain only protein 7; conserved hypothetical protein, structural genomics, NPPSFA; 1.46A {Homo sapiens} Length = 90

 Score = 77.8 bits (192), Expect = 8e-18
 Identities = 21/87 (24%), Positives = 33/87 (37%), Gaps = 8/87 (9%)

Query: 579 IVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVC 638
            + +        GFTI           GIF+ S+ + G  AE  +L+  DEI+AIN    
Sbjct: 8   SINQTPGKSLDFGFTIKWDIP------GIFVASV-EAGSPAEFSQLQVDDEIIAINNTKF 60

Query: 639 HDLTHLEAISLFK-TIKNGSISLHICR 664
                 E         + G + + + R
Sbjct: 61  SYNDSKEWEEAMAKAQETGHLVMDVRR 87

>2eaq_A LIM domain only protein 7; conserved hypothetical protein, structural genomics, NPPSFA; 1.46A {Homo sapiens} Length = 90

 Score = 54.0 bits (130), Expect = 2e-09
 Identities = 14/61 (22%), Positives = 29/61 (47%), Gaps = 1/61 (1%)

Query: 414 EGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLL 473
           + +I G  VA + +G  AE    L++ DEII++N  +       + +  ++       L+
Sbjct: 24  KWDIPGIFVASVEAGSPAEFSQ-LQVDDEIIAINNTKFSYNDSKEWEEAMAKAQETGHLV 82

Query: 474 I 474
           +
Sbjct: 83  M 83

>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus} Length = 263

 Score = 82.9 bits (204), Expect = 8e-18
 Identities = 25/107 (23%), Positives = 42/107 (39%), Gaps = 4/107 (3%)

Query: 559 STNFCTLPRRPRSAICTFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQA 618
           +      P+ P + +     +   K     GLG +I GG+++    + I I  I     A
Sbjct: 61  AEPGAAPPQLPEALLLQRRRVTVRKADAG-GLGISIKGGRENK---MPILISKIFKGLAA 116

Query: 619 AEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKNGSISLHICRR 665
            +   L  GD IL++NG+     TH EA+   K      +      +
Sbjct: 117 DQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKYMK 163

>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus} Length = 263

 Score = 55.5 bits (133), Expect = 1e-08
 Identities = 25/146 (17%), Positives = 47/146 (32%), Gaps = 5/146 (3%)

Query: 359 PAYQNSSDYHSMMEISELSSENSEDSQEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIG 418
                 +  +   E      +  E     +  V V + D    LGI I   + +      
Sbjct: 49  GPEPEPAQLNGAAEPGAAPPQLPEALLLQRRRVTVRKAD-AGGLGISIKGGRENKMP--- 104

Query: 419 GFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISRTS 478
             +++ I  G  A++   L +GD I+SVNG+ L   T  +A   +      + L +    
Sbjct: 105 -ILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKYMK 163

Query: 479 LKKSNAENEYNESHSREKKSKETRFS 504
                 +N    +         +   
Sbjct: 164 EVSPYFKNSAGGTSVGWDSPPASPLQ 189

>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding, protein-binding, RHOB, nitration, cytoplasm, PDZ domain, CAsp8; 1.82A {Homo sapiens} Length = 109

 Score = 78.3 bits (193), Expect = 8e-18
 Identities = 23/91 (25%), Positives = 36/91 (39%), Gaps = 10/91 (10%)

Query: 578 TIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQV 637
           +I F    G   LGFT+ G          + +  +     A+  G  +EGD I++I    
Sbjct: 26  SIRFTAEEG--DLGFTLRGNA-------PVQVHFLDPYCSASVAG-AREGDYIVSIQLVD 75

Query: 638 CHDLTHLEAISLFKTIKNGSISLHICRRLKS 668
           C  LT  E + L K+     I + +   L  
Sbjct: 76  CKWLTLSEVMKLLKSFGEDEIEMKVVSLLDE 106

>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding, protein-binding, RHOB, nitration, cytoplasm, PDZ domain, CAsp8; 1.82A {Homo sapiens} Length = 109

 Score = 43.6 bits (103), Expect = 1e-05
 Identities = 11/55 (20%), Positives = 24/55 (43%), Gaps = 2/55 (3%)

Query: 421 VVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSII-SSGPLNMDLLI 474
            V  +     A   G    GD I+S+     + LT+++   ++ S G   +++ +
Sbjct: 47  QVHFLDPYCSASVAG-AREGDYIVSIQLVDCKWLTLSEVMKLLKSFGEDEIEMKV 100

>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A {Homo sapiens} Length = 96

 Score = 77.8 bits (192), Expect = 1e-17
 Identities = 26/100 (26%), Positives = 43/100 (43%), Gaps = 16/100 (16%)

Query: 568 RPRSAICTFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEG 627
           +PR        +  EKGP  +G GF +   K    G  G F+  +     A + G ++ G
Sbjct: 3   KPR-------CLHLEKGP--QGFGFLLREEK-GLDGRPGQFLWEVDPGLPAKKAG-MQAG 51

Query: 628 DEILAINGQVCHDLTHLEAISLFKTIKNG--SISLHICRR 665
           D ++A+ G+    L H E +S    I+     +SL +   
Sbjct: 52  DRLVAVAGESVEGLGHEETVSR---IQGQGSCVSLTVVDP 88

>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A {Homo sapiens} Length = 96

 Score = 48.1 bits (115), Expect = 2e-07
 Identities = 16/86 (18%), Positives = 35/86 (40%), Gaps = 5/86 (5%)

Query: 391 VRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQR 450
           + + +    +  G  + + K        G  +  +  G  A+K G ++ GD +++V G+ 
Sbjct: 7   LHLEKG--PQGFGFLLREEKGLDGRP--GQFLWEVDPGLPAKKAG-MQAGDRLVAVAGES 61

Query: 451 LRGLTMTQAKSIISSGPLNMDLLISR 476
           + GL   +  S I      + L +  
Sbjct: 62  VEGLGHEETVSRIQGQGSCVSLTVVD 87

>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation, structural genomics, structural genomics consortium, SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A Length = 90

 Score = 76.9 bits (190), Expect = 2e-17
 Identities = 28/100 (28%), Positives = 40/100 (40%), Gaps = 19/100 (19%)

Query: 568 RPRSAICTFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEG 627
           RPR            KGP  +G GF +   K  P    G +I+S+     AA  G L+  
Sbjct: 4   RPR-------LCHLRKGP--QGYGFNLHSDKSRP----GQYIRSVDPGSPAARSG-LRAQ 49

Query: 628 DEILAINGQVCHDLTHLEAISLFKTIKNG--SISLHICRR 665
           D ++ +NGQ    L H E ++    IK       L +   
Sbjct: 50  DRLIEVNGQNVEGLRHAEVVAS---IKAREDEARLLVVGP 86

>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation, structural genomics, structural genomics consortium, SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A Length = 90

 Score = 49.2 bits (118), Expect = 1e-07
 Identities = 18/87 (20%), Positives = 33/87 (37%), Gaps = 8/87 (9%)

Query: 390 MVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQ 449
           +  + +    +  G  +   K+       G  +  +  G  A + G L   D +I VNGQ
Sbjct: 7   LCHLRKGP--QGYGFNLHSDKSR-----PGQYIRSVDPGSPAARSG-LRAQDRLIEVNGQ 58

Query: 450 RLRGLTMTQAKSIISSGPLNMDLLISR 476
            + GL   +  + I +      LL+  
Sbjct: 59  NVEGLRHAEVVASIKAREDEARLLVVG 85

>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ domain, PDZ2, acetylation, cell projection, membrane, polymorphism; NMR {Homo sapiens} Length = 98

 Score = 77.0 bits (190), Expect = 2e-17
 Identities = 28/100 (28%), Positives = 40/100 (40%), Gaps = 19/100 (19%)

Query: 568 RPRSAICTFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEG 627
           RPR           +KGP   G GF +   K  P    G FI+S+  +  A   G L+  
Sbjct: 9   RPR-------LCTMKKGP--SGYGFNLHSDKSKP----GQFIRSVDPDSPAEASG-LRAQ 54

Query: 628 DEILAINGQVCHDLTHLEAISLFKTIKNG--SISLHICRR 665
           D I+ +NG       H + +S    I+ G     L +  R
Sbjct: 55  DRIVEVNGVCMEGKQHGDVVSA---IRAGGDETKLLVVDR 91

>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ domain, PDZ2, acetylation, cell projection, membrane, polymorphism; NMR {Homo sapiens} Length = 98

 Score = 49.3 bits (118), Expect = 1e-07
 Identities = 18/84 (21%), Positives = 28/84 (33%), Gaps = 8/84 (9%)

Query: 391 VRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQR 450
             + +       G  +   K+       G  +  +     AE  G L   D I+ VNG  
Sbjct: 13  CTMKKGP--SGYGFNLHSDKSK-----PGQFIRSVDPDSPAEASG-LRAQDRIVEVNGVC 64

Query: 451 LRGLTMTQAKSIISSGPLNMDLLI 474
           + G       S I +G     LL+
Sbjct: 65  MEGKQHGDVVSAIRAGGDETKLLV 88

>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1 protein, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1 Length = 113

 Score = 77.5 bits (191), Expect = 2e-17
 Identities = 28/122 (22%), Positives = 43/122 (35%), Gaps = 16/122 (13%)

Query: 544 STGSISGDEEETILTSTNFCTLPRRPRSAICTFHTIVFEKGPGKKGLGFTIVGGKDSPRG 603
           S+GS     +E +  S          +        +  EK      LG T+    D    
Sbjct: 2   SSGSSGPITDERVYESIGHYG-GETVK-------IVRIEKARDI-PLGATVRNEMD---- 48

Query: 604 AIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKNGSISLHIC 663
              + I  I+  G A + G L EGDE+L ING         E   L   +  G+++  + 
Sbjct: 49  --SVIISRIVKGGAAEKSGLLHEGDEVLEINGIEIRGKDVNEVFDLLSDMH-GTLTFVLI 105

Query: 664 RR 665
             
Sbjct: 106 PS 107

>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1 protein, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1 Length = 113

 Score = 68.2 bits (167), Expect = 4e-14
 Identities = 27/115 (23%), Positives = 50/115 (43%), Gaps = 8/115 (6%)

Query: 369 SMMEISELSSENSEDSQEGQTMVRVN-RRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVS 427
           S   I++     S     G+T+  V   +  +  LG  +          +   +++ IV 
Sbjct: 5   SSGPITDERVYESIGHYGGETVKIVRIEKARDIPLGATV-------RNEMDSVIISRIVK 57

Query: 428 GGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISRTSLKKS 482
           GG AEK G L  GDE++ +NG  +RG  + +   ++S     +  ++  +S   S
Sbjct: 58  GGAAEKSGLLHEGDEVLEINGIEIRGKDVNEVFDLLSDMHGTLTFVLIPSSGPSS 112

>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score = 76.4 bits (188), Expect = 5e-17
 Identities = 22/100 (22%), Positives = 41/100 (41%), Gaps = 9/100 (9%)

Query: 566 PRRPRSAICTFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLK 625
            R+ R  +     +  +KG     LG +IV G+       GI++  +     A + G L+
Sbjct: 10  RRKDRPYVEEPRHVKVQKGSE--PLGISIVSGEKG-----GIYVSKVTVGSIAHQAG-LE 61

Query: 626 EGDEILAINGQVCHDLTHLEAISLFKTIKNGSISLHICRR 665
            GD++L  NG      T  +A  +     + +I++     
Sbjct: 62  YGDQLLEFNGINLRSATEQQARLIIGQQCD-TITILAQYN 100

>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score = 55.6 bits (134), Expect = 1e-09
 Identities = 29/104 (27%), Positives = 43/104 (41%), Gaps = 10/104 (9%)

Query: 374 SELSSENSEDSQEGQT-MVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAE 432
           S       +     +   V+V +    E LGI I        G  GG  V+ +  G +A 
Sbjct: 5   SSGGERRKDRPYVEEPRHVKVQKGS--EPLGISIVS------GEKGGIYVSKVTVGSIAH 56

Query: 433 KEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISR 476
           + G LE GD+++  NG  LR  T  QA+ II      + +L   
Sbjct: 57  QAG-LEYGDQLLEFNGINLRSATEQQARLIIGQQCDTITILAQY 99

>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling protein; NMR {Homo sapiens} Length = 83

 Score = 75.3 bits (186), Expect = 5e-17
 Identities = 21/99 (21%), Positives = 36/99 (36%), Gaps = 22/99 (22%)

Query: 568 RPRSAICTFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEG 627
           R R       ++   +G    G GFT+ G            +  ++    A   G L+ G
Sbjct: 2   RVR-------SVEVARGRA--GYGFTLSGQA-------PCVLSCVMRGSPADFVG-LRAG 44

Query: 628 DEILAINGQVCHDLTHLEAISLFKTIKNG--SISLHICR 664
           D+ILA+N       +H + + L   I      + + I  
Sbjct: 45  DQILAVNEINVKKASHEDVVKL---IGKCSGVLHMVIAE 80

>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling protein; NMR {Homo sapiens} Length = 83

 Score = 48.4 bits (116), Expect = 1e-07
 Identities = 12/58 (20%), Positives = 28/58 (48%), Gaps = 1/58 (1%)

Query: 419 GFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISR 476
             V++ ++ G  A+  G L  GD+I++VN   ++  +      +I      + ++I+ 
Sbjct: 24  PCVLSCVMRGSPADFVG-LRAGDQILAVNEINVKKASHEDVVKLIGKCSGVLHMVIAE 80

>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing protein 3; structural genomics consortium, SGC, PDZ domain, signaling P; 1.60A {Homo sapiens} Length = 113

 Score = 75.6 bits (186), Expect = 8e-17
 Identities = 30/91 (32%), Positives = 40/91 (43%), Gaps = 12/91 (13%)

Query: 576 FHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAING 635
             TI   KGP  KG GF I           G  +K ILD+        L++GD I  I  
Sbjct: 13  LVTIPLIKGP--KGFGFAIADS------PTGQKVKMILDSQWC---QGLQKGDIIKEIYH 61

Query: 636 QVCHDLTHLEAISLFKTIKNGS-ISLHICRR 665
           Q   +LTHL+ + + K    G+ + L I R 
Sbjct: 62  QNVQNLTHLQVVEVLKQFPVGADVPLLILRG 92

>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing protein 3; structural genomics consortium, SGC, PDZ domain, signaling P; 1.60A {Homo sapiens} Length = 113

 Score = 42.1 bits (99), Expect = 5e-05
 Identities = 19/79 (24%), Positives = 29/79 (36%), Gaps = 12/79 (15%)

Query: 402 LGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKS 461
            G  IA        +  G  V  I+          L+ GD I  +  Q ++ LT  Q   
Sbjct: 25  FGFAIA-------DSPTGQKVKMILDSQWC---QGLQKGDIIKEIYHQNVQNLTHLQVVE 74

Query: 462 IISSGPLN--MDLLISRTS 478
           ++   P+   + LLI R  
Sbjct: 75  VLKQFPVGADVPLLILRGG 93

>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3, human, structural genomics, structural GE consortium, SGC, signaling protein; 2.39A {Homo sapiens} SCOP: b.36.1.1 Length = 91

 Score = 74.3 bits (183), Expect = 1e-16
 Identities = 20/101 (19%), Positives = 37/101 (36%), Gaps = 18/101 (17%)

Query: 568 RPRSAICTFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEG 627
           R R        I   +G    G GFTI            + ++++   G A   G L++ 
Sbjct: 3   RYR-------QITIPRGKD--GFGFTICCDS-------PVRVQAVDSGGPAERAG-LQQL 45

Query: 628 DEILAINGQVCHDLTHLEAISLFKTIKNGSISLHICRRLKS 668
           D +L +N +       +E     ++  +  I L + R +  
Sbjct: 46  DTVLQLNERPVEHWKCVELAHEIRSCPS-EIILLVWRMVPQ 85

>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3, human, structural genomics, structural GE consortium, SGC, signaling protein; 2.39A {Homo sapiens} SCOP: b.36.1.1 Length = 91

 Score = 48.1 bits (115), Expect = 2e-07
 Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 1/59 (1%)

Query: 419 GFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISRT 477
              V  + SGG AE+ G L+  D ++ +N + +      +    I S P  + LL+ R 
Sbjct: 25  PVRVQAVDSGGPAERAG-LQQLDTVLQLNERPVEHWKCVELAHEIRSCPSEIILLVWRM 82

>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A Length = 166

 Score = 76.4 bits (188), Expect = 2e-16
 Identities = 22/99 (22%), Positives = 40/99 (40%), Gaps = 15/99 (15%)

Query: 566 PRRPRSAICTFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLK 625
              PR        ++  K      +G  +    +      GIF++ +  N  A+  G L+
Sbjct: 2   AMDPR-------EVILCKDQDG-KIGLRLKSIDN------GIFVQLVQANSPASLVG-LR 46

Query: 626 EGDEILAINGQVCHDLTHLEAISLFKTIKNGSISLHICR 664
            GD++L ING+ C   +  +A  + K      I++ I  
Sbjct: 47  FGDQVLQINGENCAGWSSDKAHKVLKQAFGEKITMTIRD 85

>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A Length = 166

 Score = 54.1 bits (130), Expect = 1e-08
 Identities = 14/68 (20%), Positives = 31/68 (45%), Gaps = 8/68 (11%)

Query: 396 RDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLT 455
           +D + ++G+ +  I         G  V  + +   A   G L  GD+++ +NG+   G +
Sbjct: 12  KDQDGKIGLRLKSID-------NGIFVQLVQANSPASLVG-LRFGDQVLQINGENCAGWS 63

Query: 456 MTQAKSII 463
             +A  ++
Sbjct: 64  SDKAHKVL 71

>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A Length = 166

 Score = 44.0 bits (104), Expect = 3e-05
 Identities = 19/90 (21%), Positives = 30/90 (33%), Gaps = 12/90 (13%)

Query: 574 CTFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAI 633
             F   +         +GF    GK +          SI+ +  AA +G L     I  I
Sbjct: 86  RPFERTITMHKDSTGHVGFIFKNGKIT----------SIVKDSSAARNG-LLTEHNICEI 134

Query: 634 NGQVCHDLTHLEAISLFKTIKNGSISLHIC 663
           NGQ    L   +   +  T     +++ I 
Sbjct: 135 NGQNVIGLKDSQIADILST-SGTVVTITIM 163

>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A Length = 166

 Score = 43.7 bits (103), Expect = 4e-05
 Identities = 22/91 (24%), Positives = 34/91 (37%), Gaps = 2/91 (2%)

Query: 385 QEGQTMVRVNRRDFNEELGIYIAKIKNSSEG-NIGGFVVAHIVSGGLAEKEGCLELGDEI 443
           Q     + +  RD   E  I + K      G       +  IV    A + G L     I
Sbjct: 73  QAFGEKITMTIRDRPFERTITMHKDSTGHVGFIFKNGKITSIVKDSSAARNG-LLTEHNI 131

Query: 444 ISVNGQRLRGLTMTQAKSIISSGPLNMDLLI 474
             +NGQ + GL  +Q   I+S+    + + I
Sbjct: 132 CEINGQNVIGLKDSQIADILSTSGTVVTITI 162

>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm, phosphoprotein, transport protein, CAsp; 2.60A {Homo sapiens} PDB: 2eej_A Length = 91

 Score = 73.5 bits (181), Expect = 3e-16
 Identities = 23/101 (22%), Positives = 42/101 (41%), Gaps = 19/101 (18%)

Query: 567 RRPRSAICTFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKE 626
            +P+            KG    G GF +   +  P    G FIK +   G A   G L++
Sbjct: 2   MKPK-------LCRLAKGEN--GYGFHLNAIRGLP----GSFIKEVQKGGPADLAG-LED 47

Query: 627 GDEILAINGQVCHDLTHLEAISLFKTIKNG--SISLHICRR 665
            D I+ +NG    D  + + +     I++   +++L +C +
Sbjct: 48  EDVIIEVNGVNVLDEPYEKVVDR---IQSSGKNVTLLVCGK 85

>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm, phosphoprotein, transport protein, CAsp; 2.60A {Homo sapiens} PDB: 2eej_A Length = 91

 Score = 46.9 bits (112), Expect = 6e-07
 Identities = 21/84 (25%), Positives = 33/84 (39%), Gaps = 8/84 (9%)

Query: 391 VRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQR 450
            R+ +       G ++  I+        G  +  +  GG A+  G LE  D II VNG  
Sbjct: 7   CRLAKG--ENGYGFHLNAIRGLP-----GSFIKEVQKGGPADLAG-LEDEDVIIEVNGVN 58

Query: 451 LRGLTMTQAKSIISSGPLNMDLLI 474
           +      +    I S   N+ LL+
Sbjct: 59  VLDEPYEKVVDRIQSSGKNVTLLV 82

>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: b.36.1.1 Length = 100

 Score = 73.6 bits (181), Expect = 3e-16
 Identities = 18/100 (18%), Positives = 34/100 (34%), Gaps = 11/100 (11%)

Query: 566 PRRPRSAICTFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLK 625
                        I   +G    G GFTI            + ++++   G A   G L+
Sbjct: 6   SGEGDPENGEKLQITIRRGKD--GFGFTICCDS-------PVRVQAVDSGGPAERAG-LQ 55

Query: 626 EGDEILAINGQVCHDLTHLEAISLFKTIKNGSISLHICRR 665
           + D +L +N +       +E     ++  +  I L + R 
Sbjct: 56  QLDTVLQLNERPVEHWKCVELAHEIRSCPS-EIILLVWRV 94

>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: b.36.1.1 Length = 100

 Score = 49.0 bits (117), Expect = 1e-07
 Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 1/64 (1%)

Query: 419 GFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISRTS 478
              V  + SGG AE+ G L+  D ++ +N + +      +    I S P  + LL+ R S
Sbjct: 37  PVRVQAVDSGGPAERAG-LQQLDTVLQLNERPVEHWKCVELAHEIRSCPSEIILLVWRVS 95

Query: 479 LKKS 482
              S
Sbjct: 96  GPSS 99

>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3, microtubule associated serine/threonine kinase 3, PDZ domain, structural genomics; 1.20A {Homo sapiens} PDB: 2w7r_A 2kqf_A 2kyl_A 3ps4_A Length = 99

 Score = 73.2 bits (180), Expect = 4e-16
 Identities = 23/94 (24%), Positives = 37/94 (39%), Gaps = 12/94 (12%)

Query: 578 TIVFEKGPGKKGLGFTIVGGK----DSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAI 633
            IV       K  GF++   +    DS    +   + S+ D    A++  L+ GD I  I
Sbjct: 5   PIVIHSSG--KKYGFSLRAIRVYMGDSDVYTVHHVVWSVEDGS-PAQEAGLRAGDLITHI 61

Query: 634 NGQVCHDLTHLEAISLFKTIKNG--SISLHICRR 665
           NG+    L H++ + L   +      ISL     
Sbjct: 62  NGESVLGLVHMDVVEL---LLKSGNKISLRTTAL 92

>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3, microtubule associated serine/threonine kinase 3, PDZ domain, structural genomics; 1.20A {Homo sapiens} PDB: 2w7r_A 2kqf_A 2kyl_A 3ps4_A Length = 99

 Score = 43.2 bits (102), Expect = 1e-05
 Identities = 18/87 (20%), Positives = 33/87 (37%), Gaps = 5/87 (5%)

Query: 393 VNRRDFNEELGIYIAKIKN---SSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQ 449
           V      ++ G  +  I+     S+      VV  +  G  A++ G L  GD I  +NG+
Sbjct: 7   VIHSS-GKKYGFSLRAIRVYMGDSDVYTVHHVVWSVEDGSPAQEAG-LRAGDLITHINGE 64

Query: 450 RLRGLTMTQAKSIISSGPLNMDLLISR 476
            + GL       ++      + L  + 
Sbjct: 65  SVLGLVHMDVVELLLKSGNKISLRTTA 91

>2eei_A PDZ domain-containing protein 1; regulatory factor, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 106

 Score = 73.2 bits (180), Expect = 5e-16
 Identities = 18/86 (20%), Positives = 32/86 (37%), Gaps = 14/86 (16%)

Query: 566 PRRPRSAICTFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLK 625
             +PR            K  G    GF++   +       G+++  I   G A   G + 
Sbjct: 6   SGQPR-------LCYLVKEGG--SYGFSLKTVQGKK----GVYMTDITPQGVAMRAG-VL 51

Query: 626 EGDEILAINGQVCHDLTHLEAISLFK 651
             D ++ +NG+   D +H E +   K
Sbjct: 52  ADDHLIEVNGENVEDASHEEVVEKVK 77

>2eei_A PDZ domain-containing protein 1; regulatory factor, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 106

 Score = 49.3 bits (118), Expect = 1e-07
 Identities = 12/78 (15%), Positives = 27/78 (34%), Gaps = 6/78 (7%)

Query: 399 NEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQ 458
               G  +  ++        G  +  I   G+A + G +   D +I VNG+ +   +  +
Sbjct: 18  GGSYGFSLKTVQGK-----KGVYMTDITPQGVAMRAG-VLADDHLIEVNGENVEDASHEE 71

Query: 459 AKSIISSGPLNMDLLISR 476
               +      +  L+  
Sbjct: 72  VVEKVKKSGSRVMFLLVD 89

>2ego_A General receptor for phosphoinositides 1- associated scaffold protein; PDZ domain, ligand-free, protein binding; 1.80A {Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A Length = 96

 Score = 71.6 bits (176), Expect = 1e-15
 Identities = 21/94 (22%), Positives = 35/94 (37%), Gaps = 11/94 (11%)

Query: 577 HTIVFEKGPGKKGLGFTIVGGK----DSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILA 632
             +  EKG  +   GF I        +  R  +  F+  + ++  A   G L  GD I +
Sbjct: 6   KVLTLEKGDNQ-TFGFEIQTYGLHHREEQRVEMVTFVARVHESSPAQLAG-LTPGDTIAS 63

Query: 633 INGQVCHDLTHLEAISLFKTIKNG--SISLHICR 664
           +NG     + H E + +   IK     + L    
Sbjct: 64  VNGLNVEGIRHREIVDI---IKASGNVLRLETLY 94

>2ego_A General receptor for phosphoinositides 1- associated scaffold protein; PDZ domain, ligand-free, protein binding; 1.80A {Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A Length = 96

 Score = 49.3 bits (118), Expect = 9e-08
 Identities = 21/92 (22%), Positives = 34/92 (36%), Gaps = 7/92 (7%)

Query: 391 VRVNRRDFNEELGIYIAKIK----NSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISV 446
           + + + D N+  G  I              +  FV A +     A+  G L  GD I SV
Sbjct: 8   LTLEKGD-NQTFGFEIQTYGLHHREEQRVEMVTFV-ARVHESSPAQLAG-LTPGDTIASV 64

Query: 447 NGQRLRGLTMTQAKSIISSGPLNMDLLISRTS 478
           NG  + G+   +   II +    + L     +
Sbjct: 65  NGLNVEGIRHREIVDIIKASGNVLRLETLYGT 96

>2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ domain, protein, acetylation, cell projection, disease mutation, membrane; NMR {Homo sapiens} Length = 128

 Score = 72.6 bits (178), Expect = 2e-15
 Identities = 26/100 (26%), Positives = 39/100 (39%), Gaps = 15/100 (15%)

Query: 566 PRRPRSAICTFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLK 625
             RPR           +KGP   G GF +   K  P    G FI+S+  +  A   G L+
Sbjct: 7   MLRPR-------LCTMKKGP--SGYGFNLHSDKSKP----GQFIRSVDPDSPAEASG-LR 52

Query: 626 EGDEILAINGQVCHDLTHLEAISLFKTIKNGSISLHICRR 665
             D I+ +NG       H + +S  +   +    L +  R
Sbjct: 53  AQDRIVEVNGVCMEGKQHGDVVSAIRAGGD-ETKLLVVDR 91

>2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ domain, protein, acetylation, cell projection, disease mutation, membrane; NMR {Homo sapiens} Length = 128

 Score = 42.5 bits (100), Expect = 4e-05
 Identities = 18/86 (20%), Positives = 28/86 (32%), Gaps = 8/86 (9%)

Query: 391 VRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQR 450
             + +       G  +   K+       G  +  +     AE  G L   D I+ VNG  
Sbjct: 13  CTMKKGP--SGYGFNLHSDKSK-----PGQFIRSVDPDSPAEASG-LRAQDRIVEVNGVC 64

Query: 451 LRGLTMTQAKSIISSGPLNMDLLISR 476
           + G       S I +G     LL+  
Sbjct: 65  MEGKQHGDVVSAIRAGGDETKLLVVD 90

>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ domain, arhgef11, KIAA0380, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2omj_A 2os6_A Length = 93

 Score = 70.8 bits (174), Expect = 2e-15
 Identities = 25/89 (28%), Positives = 47/89 (52%), Gaps = 14/89 (15%)

Query: 578 TIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQV 637
            ++ +K     G GFT+ G +        + ++S+   G A + G +KEGD I+ +NG +
Sbjct: 11  CVIIQKDQ--HGFGFTVSGDR-------IVLVQSVRPGGAAMKAG-VKEGDRIIKVNGTM 60

Query: 638 CHDLTHLEAISLFKTIKNGS-ISLHICRR 665
             + +HLE + L   IK+G+ ++L +   
Sbjct: 61  VTNSSHLEVVKL---IKSGAYVALTLLGS 86

>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ domain, arhgef11, KIAA0380, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2omj_A 2os6_A Length = 93

 Score = 50.0 bits (120), Expect = 6e-08
 Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 1/64 (1%)

Query: 419 GFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISRTS 478
             +V  +  GG A K G ++ GD II VNG  +   +  +   +I SG      L+  +S
Sbjct: 30  IVLVQSVRPGGAAMKAG-VKEGDRIIKVNGTMVTNSSHLEVVKLIKSGAYVALTLLGSSS 88

Query: 479 LKKS 482
              S
Sbjct: 89  GPSS 92

>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane protein; NMR {Homo sapiens} PDB: 2ev8_A Length = 97

 Score = 70.9 bits (174), Expect = 3e-15
 Identities = 24/90 (26%), Positives = 33/90 (36%), Gaps = 7/90 (7%)

Query: 575 TFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAIN 634
               I FEK   +  +G  +   +          +  IL  G     G L  GDEIL IN
Sbjct: 12  MVRLIQFEKVTEE-PMGICLKLNEKQS-----CTVARILHGGMIHRQGSLHVGDEILEIN 65

Query: 635 GQVCHDLTHLEAISLFKTIKNGSISLHICR 664
           G    + +  +     K  K G ISL +  
Sbjct: 66  GTNVTNHSVDQLQKAMKETK-GMISLKVIP 94

>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane protein; NMR {Homo sapiens} PDB: 2ev8_A Length = 97

 Score = 68.9 bits (169), Expect = 1e-14
 Identities = 19/103 (18%), Positives = 41/103 (39%), Gaps = 7/103 (6%)

Query: 376 LSSENSEDSQEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEG 435
           +   +   S     +++  +    E +GI +               VA I+ GG+  ++G
Sbjct: 1   MGHHHHHHSGHMVRLIQFEKVT-EEPMGICL------KLNEKQSCTVARILHGGMIHRQG 53

Query: 436 CLELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISRTS 478
            L +GDEI+ +NG  +   ++ Q +  +      + L +    
Sbjct: 54  SLHVGDEILEINGTNVTNHSVDQLQKAMKETKGMISLKVIPNQ 96

>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1 Length = 88

 Score = 69.7 bits (171), Expect = 5e-15
 Identities = 20/85 (23%), Positives = 36/85 (42%), Gaps = 7/85 (8%)

Query: 578 TIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQV 637
            + F+K   +  +G T+   + +        +  I+  G     G L  GDEI  ING  
Sbjct: 4   LVQFQKNTDE-PMGITLKMNELN-----HCIVARIMHGGMIHRQGTLHVGDEIREINGIS 57

Query: 638 CHDLTHLEAISLFKTIKNGSISLHI 662
             + T  +   + + ++ GSI+  I
Sbjct: 58  VANQTVEQLQKMLREMR-GSITFKI 81

>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1 Length = 88

 Score = 61.2 bits (149), Expect = 4e-12
 Identities = 20/85 (23%), Positives = 41/85 (48%), Gaps = 7/85 (8%)

Query: 390 MVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQ 449
           +V+  +   +E +GI +          +   +VA I+ GG+  ++G L +GDEI  +NG 
Sbjct: 4   LVQFQKNT-DEPMGITL------KMNELNHCIVARIMHGGMIHRQGTLHVGDEIREINGI 56

Query: 450 RLRGLTMTQAKSIISSGPLNMDLLI 474
            +   T+ Q + ++     ++   I
Sbjct: 57  SVANQTVEQLQKMLREMRGSITFKI 81

>1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain, intracellular signaling cascade, signal transduction; NMR {Mus musculus} SCOP: b.36.1.1 Length = 111

 Score = 70.6 bits (173), Expect = 5e-15
 Identities = 27/105 (25%), Positives = 41/105 (39%), Gaps = 17/105 (16%)

Query: 567 RRPRSAICTFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKE 626
             PR        I F    G   LGFT+ G          + +  +  +  A+  G  KE
Sbjct: 14  SPPR-------GIHFTVEEG--DLGFTLRGNT-------PVQVHFLDPHCSASLAG-AKE 56

Query: 627 GDEILAINGQVCHDLTHLEAISLFKTIKNGSISLHICRRLKSKKT 671
           GD I++I G  C  LT  E + L K+     + + +   L S  +
Sbjct: 57  GDYIVSIQGVDCKWLTVSEVMKLLKSFGGEEVEMKVVSLLDSTSS 101

>1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain, intracellular signaling cascade, signal transduction; NMR {Mus musculus} SCOP: b.36.1.1 Length = 111

 Score = 44.0 bits (104), Expect = 1e-05
 Identities = 14/71 (19%), Positives = 30/71 (42%), Gaps = 2/71 (2%)

Query: 418 GGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSII-SSGPLNMDLLISR 476
               V  +     A   G  + GD I+S+ G   + LT+++   ++ S G   +++ +  
Sbjct: 36  TPVQVHFLDPHCSASLAG-AKEGDYIVSIQGVDCKWLTVSEVMKLLKSFGGEEVEMKVVS 94

Query: 477 TSLKKSNAENE 487
                S+  N+
Sbjct: 95  LLDSTSSMHNK 105

>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 102

 Score = 70.1 bits (172), Expect = 7e-15
 Identities = 23/86 (26%), Positives = 35/86 (40%), Gaps = 10/86 (11%)

Query: 577 HTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQ 636
             +V +KG    G GF +  G +      G  IK I     A   G LK  D ++A+NG+
Sbjct: 8   RVVVIKKGS--NGYGFYLRAGPEQK----GQIIKDIEPGSPAEAAG-LKNNDLVVAVNGK 60

Query: 637 VCHDLTHLEAISLFKTIKNGSISLHI 662
               L H   + +   I+ G     +
Sbjct: 61  SVEALDHDGVVEM---IRKGGDQTTL 83

>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 102

 Score = 43.9 bits (104), Expect = 9e-06
 Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 1/57 (1%)

Query: 418 GGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLI 474
            G ++  I  G  AE  G L+  D +++VNG+ +  L       +I  G     LL+
Sbjct: 30  KGQIIKDIEPGSPAEAAG-LKNNDLVVAVNGKSVEALDHDGVVEMIRKGGDQTTLLV 85

>3kzd_A TIAM-1, T-lymphoma invasion and metastasis-inducing prote; PDZ, cell junction, cell adhesion, signaling protein, nucleotide exchange factor; 1.30A {Homo sapiens} PDB: 3kze_A Length = 94

 Score = 66.9 bits (163), Expect = 6e-14
 Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 4/76 (5%)

Query: 577 HTIVFEKGPG-KKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAING 635
           H+I  EK        GF++   ++       +++ S+ + G A++ G LK GDEIL IN 
Sbjct: 8   HSIHIEKSDTAADTYGFSLSSVEEDGIR--RLYVNSVKETGLASKKG-LKAGDEILEINN 64

Query: 636 QVCHDLTHLEAISLFK 651
           +    L          
Sbjct: 65  RAADALNSSMLKDFLS 80

>3kzd_A TIAM-1, T-lymphoma invasion and metastasis-inducing prote; PDZ, cell junction, cell adhesion, signaling protein, nucleotide exchange factor; 1.30A {Homo sapiens} PDB: 3kze_A Length = 94

 Score = 50.0 bits (119), Expect = 6e-08
 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 1/62 (1%)

Query: 409 IKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPL 468
           + +  E  I    V  +   GLA K+G L+ GDEI+ +N +    L  +  K  +S   L
Sbjct: 26  LSSVEEDGIRRLYVNSVKETGLASKKG-LKAGDEILEINNRAADALNSSMLKDFLSQPSL 84

Query: 469 NM 470
            +
Sbjct: 85  GL 86

>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding protein; PDZ domain, cytoplasm, membrane, polymorphism, protein binding; 2.70A {Homo sapiens} Length = 104

 Score = 67.1 bits (164), Expect = 7e-14
 Identities = 17/79 (21%), Positives = 31/79 (39%), Gaps = 6/79 (7%)

Query: 577 HTIVFEKGPGKKGLGFTIVGGK----DSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILA 632
             +  EK   +   GF I   +    ++    +   I  I ++  A   G L+ GD +  
Sbjct: 17  KLVTVEKQDNE-TFGFEIQSYRPQNQNACSSEMFTLICKIQEDSPAHCAG-LQAGDVLAN 74

Query: 633 INGQVCHDLTHLEAISLFK 651
           ING      T+ + + L +
Sbjct: 75  INGVSTEGFTYKQVVDLIR 93

>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding protein; PDZ domain, cytoplasm, membrane, polymorphism, protein binding; 2.70A {Homo sapiens} Length = 104

 Score = 52.5 bits (126), Expect = 8e-09
 Identities = 24/101 (23%), Positives = 42/101 (41%), Gaps = 5/101 (4%)

Query: 377 SSENSEDSQEGQTMVRVNRRDFNEELGIYIAKIKN---SSEGNIGGFVVAHIVSGGLAEK 433
           SS  S+ S   + +V V ++D NE  G  I   +    ++  +    ++  I     A  
Sbjct: 5   SSGLSDFSWSQRKLVTVEKQD-NETFGFEIQSYRPQNQNACSSEMFTLICKIQEDSPAHC 63

Query: 434 EGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLI 474
            G L+ GD + ++NG    G T  Q   +I S    + +  
Sbjct: 64  AG-LQAGDVLANINGVSTEGFTYKQVVDLIRSSGNLLTIET 103

>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A 3qjm_A 3qjn_A 3o5n_A* Length = 109

 Score = 66.8 bits (163), Expect = 1e-13
 Identities = 21/101 (20%), Positives = 47/101 (46%), Gaps = 16/101 (15%)

Query: 578 TIVFEKGPGKKGLGFTIVGGK---------DSPRGAIGIFIKSILDNGQAAEDGRLKEGD 628
           T++ +K   + G GF + G K          +P      +++S+ + G A   G L+ GD
Sbjct: 10  TVLLQKKDSE-GFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAG-LRMGD 67

Query: 629 EILAINGQVCHDLTHLEAISLFKTIKNG--SISLHICRRLK 667
            ++ +NGQ    + H + +++   I+ G  ++ + +    +
Sbjct: 68  FLIEVNGQNVVKVGHRQVVNM---IRQGGNTLMVKVVMVTR 105

>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A 3qjm_A 3qjn_A 3o5n_A* Length = 109

 Score = 45.2 bits (107), Expect = 4e-06
 Identities = 20/96 (20%), Positives = 40/96 (41%), Gaps = 10/96 (10%)

Query: 391 VRVNRRDFNEELGIYIAKIKNSSEGNIG--------GFVVAHIVSGGLAEKEGCLELGDE 442
           V + ++D +E  G  +   K  +                +  +  GG+A + G L +GD 
Sbjct: 11  VLLQKKD-SEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAG-LRMGDF 68

Query: 443 IISVNGQRLRGLTMTQAKSIISSGPLNMDLLISRTS 478
           +I VNGQ +  +   Q  ++I  G   + + +   +
Sbjct: 69  LIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVMVT 104

>2d8i_A T-cell lymphoma invasion and metastasis 1 variant; PDZ domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 114

 Score = 65.8 bits (160), Expect = 2e-13
 Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 4/76 (5%)

Query: 577 HTIVFEKGPG-KKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAING 635
            +I  EK        GF++   ++   G   +++ S+ + G A++ G LK GDEIL IN 
Sbjct: 17  QSIHIEKSDTAADTYGFSLSSVEE--DGIRRLYVNSVKETGLASKKG-LKAGDEILEINN 73

Query: 636 QVCHDLTHLEAISLFK 651
           +    L          
Sbjct: 74  RAADALNSSMLKDFLS 89

>2d8i_A T-cell lymphoma invasion and metastasis 1 variant; PDZ domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 114

 Score = 54.3 bits (130), Expect = 3e-09
 Identities = 24/100 (24%), Positives = 43/100 (43%), Gaps = 5/100 (5%)

Query: 374 SELSSENSEDSQEGQTMVRVNRRD-FNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAE 432
           S  SS   E   +    + + + D   +  G  ++ ++   E  I    V  +   GLA 
Sbjct: 2   SSGSSGEIEICPKVTQSIHIEKSDTAADTYGFSLSSVE---EDGIRRLYVNSVKETGLAS 58

Query: 433 KEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDL 472
           K+G L+ GDEI+ +N +    L  +  K  +S   L + +
Sbjct: 59  KKG-LKAGDEILEINNRAADALNSSMLKDFLSQPSLGLLV 97

>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI, signaling protein; 1.80A {Mus musculus} Length = 106

 Score = 65.5 bits (160), Expect = 3e-13
 Identities = 23/89 (25%), Positives = 37/89 (41%), Gaps = 7/89 (7%)

Query: 577 HTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQ 636
                 K  G+   GF +   KD+     G  I+ I +   A + G L +GD +L ING 
Sbjct: 3   RESKLSKQEGQ-NYGFFLRIEKDTD----GHLIRVIEEGSPAEKAG-LLDGDRVLRINGV 56

Query: 637 VCHDLTHLEAISLFKTIKNGSISLHICRR 665
                 H + + L +   N S++L +   
Sbjct: 57  FVDKEEHAQVVELVRKSGN-SVTLLVLDG 84

>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI, signaling protein; 1.80A {Mus musculus} Length = 106

 Score = 49.4 bits (118), Expect = 1e-07
 Identities = 17/86 (19%), Positives = 38/86 (44%), Gaps = 7/86 (8%)

Query: 391 VRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQR 450
            ++++++  +  G ++       E +  G ++  I  G  AEK G L  GD ++ +NG  
Sbjct: 5   SKLSKQE-GQNYGFFL-----RIEKDTDGHLIRVIEEGSPAEKAG-LLDGDRVLRINGVF 57

Query: 451 LRGLTMTQAKSIISSGPLNMDLLISR 476
           +      Q   ++     ++ LL+  
Sbjct: 58  VDKEEHAQVVELVRKSGNSVTLLVLD 83

>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70 kDa, Na/PI cotransporter C- terminal-associated protein, NAPI-CAP1; NMR {Mus musculus} Length = 114

 Score = 65.6 bits (160), Expect = 3e-13
 Identities = 25/100 (25%), Positives = 39/100 (39%), Gaps = 14/100 (14%)

Query: 566 PRRPRSAICTFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLK 625
              PR            K  G+   GF +   KD+     G  I+ I +   A + G L 
Sbjct: 11  TFNPR-------ECKLSKQEGQ-NYGFFLRIEKDTD----GHLIRVIEEGSPAEKAG-LL 57

Query: 626 EGDEILAINGQVCHDLTHLEAISLFKTIKNGSISLHICRR 665
           +GD +L ING       H + + L +   N S++L +   
Sbjct: 58  DGDRVLRINGVFVDKEEHAQVVELVRKSGN-SVTLLVLDG 96

>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70 kDa, Na/PI cotransporter C- terminal-associated protein, NAPI-CAP1; NMR {Mus musculus} Length = 114

 Score = 51.7 bits (124), Expect = 2e-08
 Identities = 21/112 (18%), Positives = 47/112 (41%), Gaps = 8/112 (7%)

Query: 377 SSENSEDSQEGQT-MVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEG 435
           SS +S  +        ++++++  +  G ++       E +  G ++  I  G  AEK G
Sbjct: 2   SSGSSGMASTFNPRECKLSKQE-GQNYGFFL-----RIEKDTDGHLIRVIEEGSPAEKAG 55

Query: 436 CLELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISRTSLKKSNAENE 487
            L  GD ++ +NG  +      Q   ++     ++ LL+      +   +N+
Sbjct: 56  -LLDGDRVLRINGVFVDKEEHAQVVELVRKSGNSVTLLVLDGDSYEKAVKNQ 106

>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus} Length = 132

 Score = 65.0 bits (158), Expect = 7e-13
 Identities = 24/125 (19%), Positives = 53/125 (42%), Gaps = 20/125 (16%)

Query: 559 STNFCTLPRRPRSAICTF----HTIVFEKGPGKKGLGFTIVGGK---------DSPRGAI 605
             +    P  PR +   +     T++ +K   + G GF + G K          +P    
Sbjct: 7   HHHHSQDPLVPRGSGSDYIIKEKTVLLQKKDSE-GFGFVLRGAKAQTPIEEFTPTPAFPA 65

Query: 606 GIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKNG--SISLHIC 663
             +++S+ + G A   G L+ GD ++ +NGQ    + H + +++   I+ G  ++ + + 
Sbjct: 66  LQYLESVDEGGVAWRAG-LRMGDFLIEVNGQNVVKVGHRQVVNM---IRQGGNTLMVKVV 121

Query: 664 RRLKS 668
              + 
Sbjct: 122 MVTRH 126

>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus} Length = 132

 Score = 46.1 bits (109), Expect = 3e-06
 Identities = 23/124 (18%), Positives = 49/124 (39%), Gaps = 10/124 (8%)

Query: 363 NSSDYHSMMEISELSSENSEDSQEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGF-- 420
           +S  +H   +   +   +  D    +  V + ++D +E  G  +   K  +         
Sbjct: 3   SSHHHHHHSQDPLVPRGSGSDYIIKEKTVLLQKKD-SEGFGFVLRGAKAQTPIEEFTPTP 61

Query: 421 ------VVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLI 474
                  +  +  GG+A + G L +GD +I VNGQ +  +   Q  ++I  G   + + +
Sbjct: 62  AFPALQYLESVDEGGVAWRAG-LRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKV 120

Query: 475 SRTS 478
              +
Sbjct: 121 VMVT 124

>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 126

 Score = 63.8 bits (155), Expect = 2e-12
 Identities = 26/127 (20%), Positives = 46/127 (36%), Gaps = 40/127 (31%)

Query: 566 PRRPRSAICTFHTIVFEKGPGKKGLGFTIVGGKDSP------------------------ 601
              P+       T+  ++    +G GFT+      P                        
Sbjct: 6   SGGPK-------TVTLKRTS--QGFGFTLRHFIVYPPESAIQFSYKDEENGNRGGKQRNR 56

Query: 602 -RGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKNG--SI 658
                 IF+K + + G A E G L  GD I+ +NG+     T+ + I+L   I+N   ++
Sbjct: 57  LEPMDTIFVKQVKEGGPAFEAG-LCTGDRIIKVNGESVIGKTYSQVIAL---IQNSDTTL 112

Query: 659 SLHICRR 665
            L +  +
Sbjct: 113 ELSVMPK 119

>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 126

 Score = 44.9 bits (106), Expect = 7e-06
 Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 2/77 (2%)

Query: 400 EELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQA 459
           EE G    K +N  E     FV   +  GG A + G L  GD II VNG+ + G T +Q 
Sbjct: 44  EENGNRGGKQRNRLEPMDTIFV-KQVKEGGPAFEAG-LCTGDRIIKVNGESVIGKTYSQV 101

Query: 460 KSIISSGPLNMDLLISR 476
            ++I +    ++L +  
Sbjct: 102 IALIQNSDTTLELSVMP 118

>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function; 1.80A {Homo sapiens} PDB: 3ch8_A Length = 195

 Score = 65.3 bits (158), Expect = 2e-12
 Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 8/83 (9%)

Query: 588 KGLGFTIVGGKDSPR-----GAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLT 642
             LGF+I GG             GIF+  +   G A     L+ GD+I+  NG    ++ 
Sbjct: 2   PELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPA--SKLLQPGDKIIQANGYSFINIE 59

Query: 643 HLEAISLFKTIKNGSISLHICRR 665
           H +A+SL KT +N ++ L I R 
Sbjct: 60  HGQAVSLLKTFQN-TVELIIVRE 81

>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function; 1.80A {Homo sapiens} PDB: 3ch8_A Length = 195

 Score = 45.3 bits (106), Expect = 2e-05
 Identities = 27/164 (16%), Positives = 50/164 (30%), Gaps = 17/164 (10%)

Query: 399 NEELGIYIA----KIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGL 454
           + ELG  I+       N    +  G  V  +   G A     L+ GD+II  NG     +
Sbjct: 1   SPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPAS--KLLQPGDKIIQANGYSFINI 58

Query: 455 TMTQAKSIISSGPLNMDLLISRTSLKKSNAENEYNESHSREKKSKETRFSLDKQNDFESS 514
              QA S++ +    ++L+I R         N   +      +       +         
Sbjct: 59  EHGQAVSLLKTFQNTVELIIVRE------VGNGAKQEIRVRVEKDGGSGGVSSVPTNLEV 112

Query: 515 NEQDKNNQKRLFQKNCHSINNKLLRKAIISTGSISGDEEETILT 558
                 +    +  + + +         I+ G   G+      T
Sbjct: 113 VAATPTSLLISWDASYYGV-----SYYRITYGETGGNSPVQEFT 151

>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation, cell projection, disease mutation, membrane, phosphoprotein, polymorphism; NMR {Homo sapiens} Length = 216

 Score = 65.2 bits (158), Expect = 4e-12
 Identities = 26/99 (26%), Positives = 39/99 (39%), Gaps = 15/99 (15%)

Query: 567 RRPRSAICTFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKE 626
            RPR           +KGP   G GF +   K  P    G FI+S+  +  A   G L+ 
Sbjct: 8   LRPR-------LCTMKKGP--SGYGFNLHSDKSKP----GQFIRSVDPDSPAEASG-LRA 53

Query: 627 GDEILAINGQVCHDLTHLEAISLFKTIKNGSISLHICRR 665
            D I+ +NG       H + +S  +   +    L +  R
Sbjct: 54  QDRIVEVNGVCMEGKQHGDVVSAIRAGGD-ETKLLVVDR 91

>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation, cell projection, disease mutation, membrane, phosphoprotein, polymorphism; NMR {Homo sapiens} Length = 216

 Score = 40.9 bits (95), Expect = 6e-04
 Identities = 19/106 (17%), Positives = 35/106 (33%), Gaps = 3/106 (2%)

Query: 412 SSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMD 471
            S+ +  G  +  +     AE  G L   D I+ VNG  + G       S I +G     
Sbjct: 27  HSDKSKPGQFIRSVDPDSPAEASG-LRAQDRIVEVNGVCMEGKQHGDVVSAIRAGGDETK 85

Query: 472 LLISRTSLKKSNAENEYNESHSREKKSKETRFSLDKQNDFESSNEQ 517
           LL+     +      +     S+E  +             + ++ +
Sbjct: 86  LLV--VDRETDEFFKKCRVIPSQEHLNGPLPVPFTNGEIQKENSRE 129

>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs large homolog 2, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 91

 Score = 61.3 bits (149), Expect = 6e-12
 Identities = 24/94 (25%), Positives = 32/94 (34%), Gaps = 9/94 (9%)

Query: 575 TFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAIN 634
           +   +   K  G+  LG T             + I  IL  G  A+ G L  GD I  +N
Sbjct: 6   SGRMVGIRKTAGE-HLGVTFRVEGG------ELVIARILHGGMVAQQGLLHVGDIIKEVN 58

Query: 635 GQVCHDLTHLEAISLFKTIKNGSISLHICRRLKS 668
           GQ            L +    GS+ L I     S
Sbjct: 59  GQPVGS-DPRALQELLRNAS-GSVILKILSGPSS 90

>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs large homolog 2, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 91

 Score = 51.7 bits (124), Expect = 1e-08
 Identities = 24/93 (25%), Positives = 40/93 (43%), Gaps = 9/93 (9%)

Query: 384 SQEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEI 443
           S     MV + +    E LG+             G  V+A I+ GG+  ++G L +GD I
Sbjct: 3   SGSSGRMVGIRKTA-GEHLGVTFR-------VEGGELVIARILHGGMVAQQGLLHVGDII 54

Query: 444 ISVNGQRLRGLTMTQAKSIISSGPLNMDLLISR 476
             VNGQ + G      + ++ +   ++ L I  
Sbjct: 55  KEVNGQPV-GSDPRALQELLRNASGSVILKILS 86

>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A Length = 388

 Score = 65.8 bits (159), Expect = 1e-11
 Identities = 18/75 (24%), Positives = 34/75 (45%), Gaps = 1/75 (1%)

Query: 583 KGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLT 642
           +    + LG  +V           + + ++++ G AA  G+L  GD+I++ING     L 
Sbjct: 211 EKHKGEILGVVVVESGWGSILP-TVILANMMNGGPAARSGKLSIGDQIMSINGTSLVGLP 269

Query: 643 HLEAISLFKTIKNGS 657
                 + K +KN +
Sbjct: 270 LATCQGIIKGLKNQT 284

>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A Length = 388

 Score = 58.8 bits (141), Expect = 2e-09
 Identities = 27/133 (20%), Positives = 45/133 (33%), Gaps = 19/133 (14%)

Query: 532 SINNKLLRKAIISTGSISGDEEETILTSTNFCTLPRRPRSAICTFHTIVFEKGPGKKGLG 591
           SIN   L               + I+      T  +    +     T++ ++   K  LG
Sbjct: 259 SINGTSLVGL-------PLATCQGIIKGLKNQTQVKLNIVSCPPVTTVLIKRPDLKYQLG 311

Query: 592 FTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFK 651
           F++  G           I S++  G  AE G ++ G  I+ INGQ      H + +    
Sbjct: 312 FSVQNG----------IICSLMRGG-IAERGGVRVGHRIIEINGQSVVATAHEKIVQALS 360

Query: 652 TIKNGSISLHICR 664
               G I +    
Sbjct: 361 NSV-GEIHMKTMP 372

>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A Length = 388

 Score = 53.1 bits (126), Expect = 2e-07
 Identities = 34/217 (15%), Positives = 76/217 (35%), Gaps = 12/217 (5%)

Query: 251 SLQTCSSPQSLLLPTLECSASKCDSPTIS----TRSTVTSNSEKPSFLDKFRNSPSKSEN 306
            L   +    +L    + +       TIS      + V   + +       ++    +  
Sbjct: 69  DLFISTQRIKVLNADTQETMMDHALRTISYIADIGNIVVLMARRRMPRSASQDCIETTPG 128

Query: 307 GQLPNFQIQSYGYDSPILSSRSQNSSMISEKYNLDVPNIFNRNSGSQSLLEIPAYQNSSD 366
            Q    Q +   +   +  S        S      V       +   +  ++   + S  
Sbjct: 129 AQEGKKQYKMICH---VFESEDAQLIAQSIGQAFSVAYQEFLRANGINPEDLSQKEYSDI 185

Query: 367 YHSMMEISELSSENSEDSQEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIV 426
            ++    ++     S      +  +  ++    E LG+ + +    S       ++A+++
Sbjct: 186 INTQEMYNDDLIHFSNSENCKELQLEKHK---GEILGVVVVESGWGSIL--PTVILANMM 240

Query: 427 SGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSII 463
           +GG A + G L +GD+I+S+NG  L GL +   + II
Sbjct: 241 NGGPAARSGKLSIGDQIMSINGTSLVGLPLATCQGII 277

>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A Length = 388

 Score = 53.1 bits (126), Expect = 2e-07
 Identities = 15/95 (15%), Positives = 38/95 (40%), Gaps = 1/95 (1%)

Query: 384 SQEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEI 443
             + Q  + +        + I    +K     ++   ++  ++ GG+AE+ G + +G  I
Sbjct: 281 KNQTQVKLNIVSCPPVTTVLIKRPDLKYQLGFSVQNGIICSLMRGGIAERGG-VRVGHRI 339

Query: 444 ISVNGQRLRGLTMTQAKSIISSGPLNMDLLISRTS 478
           I +NGQ +      +    +S+    + +     +
Sbjct: 340 IEINGQSVVATAHEKIVQALSNSVGEIHMKTMPAA 374

>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A Length = 391

 Score = 65.6 bits (159), Expect = 2e-11
 Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 9/79 (11%)

Query: 578 TIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQV 637
            + F KG     +G  + GG D      GIF+  +L++  AA++G L+EGD+IL +N   
Sbjct: 12  LVKFRKG---DSVGLRLAGGNDV-----GIFVAGVLEDSPAAKEG-LEEGDQILRVNNVD 62

Query: 638 CHDLTHLEAISLFKTIKNG 656
             ++   EA+     +  G
Sbjct: 63  FTNIIREEAVLFLLDLPKG 81

>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A Length = 391

 Score = 57.1 bits (137), Expect = 7e-09
 Identities = 28/129 (21%), Positives = 50/129 (38%), Gaps = 12/129 (9%)

Query: 382 EDSQEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGD 441
              +    +V+  +    + +G+ +A       GN  G  VA ++    A KEG LE GD
Sbjct: 4   MILRPSMKLVKFRK---GDSVGLRLAG------GNDVGIFVAGVLEDSPAAKEG-LEEGD 53

Query: 442 EIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISRTSLKKSNAENEYNESHSREKKSKET 501
           +I+ VN      +   +A   +   P   ++ I      K +      ES   +     T
Sbjct: 54  QILRVNNVDFTNIIREEAVLFLLDLPKGEEVTILAQK--KKDVYRRIVESDVGDSFYIRT 111

Query: 502 RFSLDKQND 510
            F  +K++ 
Sbjct: 112 HFEYEKESP 120

>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP: b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A Length = 82

 Score = 56.5 bits (137), Expect = 2e-10
 Identities = 21/76 (27%), Positives = 27/76 (35%), Gaps = 12/76 (15%)

Query: 577 HTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQ 636
            TI   K      +GF    GK          I SI+ +  AA +G L     I  INGQ
Sbjct: 6   RTITMHKDS-TGHVGFIFKNGK----------ITSIVKDSSAARNG-LLTEHNICEINGQ 53

Query: 637 VCHDLTHLEAISLFKT 652
               L   +   +  T
Sbjct: 54  NVIGLKDSQIADILST 69

>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP: b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A Length = 82

 Score = 48.8 bits (117), Expect = 1e-07
 Identities = 17/68 (25%), Positives = 28/68 (41%), Gaps = 4/68 (5%)

Query: 410 KNSSEG---NIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSG 466
           K+S+           +  IV    A + G L     I  +NGQ + GL  +Q   I+S+ 
Sbjct: 12  KDSTGHVGFIFKNGKITSIVKDSSAARNG-LLTEHNICEINGQNVIGLKDSQIADILSTS 70

Query: 467 PLNMDLLI 474
              + + I
Sbjct: 71  GTVVTITI 78

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 63.3 bits (153), Expect = 2e-10
 Identities = 65/447 (14%), Positives = 134/447 (29%), Gaps = 100/447 (22%)

Query: 193 EDYDDSDSGIVNSSTNSSVVDDHYDF---RATRKENCRRLSFD-----RTQIINKCLRTS 244
           +++D  D   V     S +  +  D             RL F      + +++ K +   
Sbjct: 31  DNFDCKD---VQDMPKSILSKEEIDHIIMSKDAVSGTLRL-FWTLLSKQEEMVQKFVEEV 86

Query: 245 CNDSF----SSLQT-CSSPQSLLLPTLECSASKCDSPTISTRSTVTSNSEKPSFLDKFRN 299
              ++    S ++T    P  +    +E      +   +  +  V+    +     K R 
Sbjct: 87  LRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVS----RLQPYLKLRQ 142

Query: 300 SPSKSENGQLPNFQIQSY-------GYDSPILSSRSQNSSMISEKYNLDVPNIF-----N 347
           +        L   +           G     ++     S  +  K +     IF     N
Sbjct: 143 A--------LLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDF---KIFWLNLKN 191

Query: 348 RNSGSQSLLEIPA---YQNSSDYHSMMEISELSSENSEDSQEGQTMVRVNR----RDFNE 400
            NS  +++LE+     YQ   ++ S  + S          Q       + R    + +  
Sbjct: 192 CNS-PETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA-----ELRRLLKSKPYEN 245

Query: 401 EL----GIYIAKI--------------KNSSEGN-IGGFVVAHIV----SGGLAEKEGCL 437
            L     +  AK               +     + +      HI     S  L   E   
Sbjct: 246 CLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV-K 304

Query: 438 ELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISRTSLKKSNAENEYNESHSREKK 497
            L  + +    Q L      +  +     P  + + I+  S++   A  +  +  + +K 
Sbjct: 305 SLLLKYLDCRPQDLP----REVLTT---NPRRLSI-IAE-SIRDGLATWDNWKHVNCDKL 355

Query: 498 SKETRFSLDKQNDFESSNEQDKNNQKRL--FQKNCHSINNKLLRKAIISTGSISGDEEET 555
           +     SL+     E      +    RL  F  + H I   LL  ++I    I  D    
Sbjct: 356 TTIIESSLNVLEPAE-----YRKMFDRLSVFPPSAH-IPTILL--SLIWFDVIKSDVMVV 407

Query: 556 ILTSTNFCTLPRRPRSAICTFHTIVFE 582
           +     +  + ++P+ +  +  +I  E
Sbjct: 408 VNKLHKYSLVEKQPKESTISIPSIYLE 434

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 55.6 bits (133), Expect = 5e-08
 Identities = 65/465 (13%), Positives = 129/465 (27%), Gaps = 165/465 (35%)

Query: 8   TRSSQYYTSHIRQSSSTKQ---------KALLAEKRNP----LLEKVKNTKLTCFKANNI 54
            +    +TS    SS+ K          + LL  K       +L  V+N K   + A N+
Sbjct: 207 YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAK--AWNAFNL 264

Query: 55  YSNV-----NNGIIDS-TSLTDKSISVDCLNESITESDTSTLFKR---SKSND------- 98
              +        + D  ++ T   IS+D  + ++T  +  +L  +    +  D       
Sbjct: 265 SCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLT 324

Query: 99  ------NVIYSHTSNDENEWGPSNAKDNQDQWPSRDATGDKNTCIDRIKAISDKYFKSNK 152
                 ++I     +    W         D W                     K+   +K
Sbjct: 325 TNPRRLSIIAESIRDGLATW---------DNW---------------------KHVNCDK 354

Query: 153 I--IVKLYSNNKKSTTRRQRSFSFGALPGLDNLKDNP--------LYNEEEDYDDSDSGI 202
           +  I++   N  +    R+        P                 ++ +    D     +
Sbjct: 355 LTTIIESSLNVLEPAEYRKMFDRLSVFP-----PSAHIPTILLSLIWFDVIKSDVMV--V 407

Query: 203 VNSSTNSSVVD-----------DHY-DFRATRKENCRRLSFDRTQIINK--CLRTSCNDS 248
           VN     S+V+             Y + +    EN   L      I++     +T  +D 
Sbjct: 408 VNKLHKYSLVEKQPKESTISIPSIYLELKVKL-ENEYAL---HRSIVDHYNIPKTFDSDD 463

Query: 249 FSS--------------LQTCSSPQSL-LLPTLECSASKCDSPTISTRSTVTSNSEKPSF 293
                            L+    P+ + L   +                          F
Sbjct: 464 LIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMV--------------------------F 497

Query: 294 LD------KFRNS-PSKSENGQLPNFQIQSYGYDSPILSSRSQNSSMISEKYNLDVPNIF 346
           LD      K R+   + + +G + N   Q   Y   I  +  +   +++   +      F
Sbjct: 498 LDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILD------F 551

Query: 347 NRNSGSQSLLEIPAYQNSSDYHSMMEISELSSENSEDSQEGQTMV 391
                   +         S Y  ++ I+ L +E+    +E    V
Sbjct: 552 LPKIEENLI--------CSKYTDLLRIA-LMAEDEAIFEEAHKQV 587

>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1; copper chaperone for superoxide dismutase, neuronal adaptor, protein transport; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 90

 Score = 56.7 bits (137), Expect = 2e-10
 Identities = 19/86 (22%), Positives = 34/86 (39%), Gaps = 12/86 (13%)

Query: 577 HTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQ 636
            T++  +   +  LGF++  G           I S++  G A   G ++ G  I+ INGQ
Sbjct: 13  TTVLIRRPDLRYQLGFSVQNGI----------ICSLMRGGIAERGG-VRVGHRIIEINGQ 61

Query: 637 VCHDLTHLEAISLFKTIKNGSISLHI 662
                 H + + +      G I +  
Sbjct: 62  SVVATPHEKIVHILSN-AVGEIHMKT 86

>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1; copper chaperone for superoxide dismutase, neuronal adaptor, protein transport; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 90

 Score = 49.4 bits (118), Expect = 8e-08
 Identities = 19/99 (19%), Positives = 42/99 (42%), Gaps = 12/99 (12%)

Query: 380 NSEDSQEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLEL 439
           +  ++    T V + R D   +LG            ++   ++  ++ GG+AE+ G + +
Sbjct: 4   HHLETMGNVTTVLIRRPDLRYQLGF-----------SVQNGIICSLMRGGIAERGG-VRV 51

Query: 440 GDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISRTS 478
           G  II +NGQ +      +   I+S+    + +     +
Sbjct: 52  GHRIIEINGQSVVATPHEKIVHILSNAVGEIHMKTMPAA 90

>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens} Length = 468

 Score = 62.2 bits (150), Expect = 2e-10
 Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 9/82 (10%)

Query: 575 TFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAIN 634
           +   + F KG     +G  + GG D      GIF+  +L++  AA++G L+EGD+IL +N
Sbjct: 1   SMKLVKFRKG---DSVGLRLAGGNDV-----GIFVAGVLEDSPAAKEG-LEEGDQILRVN 51

Query: 635 GQVCHDLTHLEAISLFKTIKNG 656
                ++   EA+     +  G
Sbjct: 52  NVDFTNIIREEAVLFLLDLPKG 73

>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens} Length = 468

 Score = 54.9 bits (131), Expect = 5e-08
 Identities = 28/124 (22%), Positives = 52/124 (41%), Gaps = 9/124 (7%)

Query: 391 VRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQR 450
           +++ +    + +G+ +A       GN  G  VA ++    A KEG LE GD+I+ VN   
Sbjct: 2   MKLVKFRKGDSVGLRLAG------GNDVGIFVAGVLEDSPAAKEG-LEEGDQILRVNNVD 54

Query: 451 LRGLTMTQAKSIISSGPLNMDLLISRTSLKKSNAENEYNESHSREKKSKETRFSLDKQND 510
              +   +A   +    L     ++  + KK +      ES   +     T F  +K++ 
Sbjct: 55  FTNIIREEAVLFLL--DLPKGEEVTILAQKKKDVYRRIVESDVGDSFYIRTHFEYEKESP 112

Query: 511 FESS 514
           +  S
Sbjct: 113 YGLS 116

>2yub_A LIMK-2, LIM domain kinase 2; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 118

 Score = 43.3 bits (101), Expect = 2e-05
 Identities = 16/75 (21%), Positives = 27/75 (36%), Gaps = 1/75 (1%)

Query: 578 TIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAED-GRLKEGDEILAINGQ 636
           T++      +   GF++     S   A  + +K +     +  +   +  GD IL ING 
Sbjct: 17  TLISMPATTECRRGFSVTVESASSNYATTVQVKEVNRMHISPNNRNAIHPGDRILEINGT 76

Query: 637 VCHDLTHLEAISLFK 651
               L   E     K
Sbjct: 77  PVRTLRVEEVEDAIK 91

>2pzd_A Serine protease HTRA2; PDZ domain, apoptosis, mitochondria, peptid module, hydrolase; 2.75A {Homo sapiens} SCOP: b.36.1.4 Length = 113

 Score = 39.2 bits (92), Expect = 6e-04
 Identities = 15/66 (22%), Positives = 29/66 (43%), Gaps = 7/66 (10%)

Query: 606 GIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKNGS-ISLHICR 664
           G+ I  ++    A   G L+ GD ILAI  Q+  +   +        ++  S +++ I R
Sbjct: 36  GVLIHKVILGSPAHRAG-LRPGDVILAIGEQMVQNAEDVYEA-----VRTQSQLAVQIRR 89

Query: 665 RLKSKK 670
             ++  
Sbjct: 90  GRETLT 95

>4fgm_A Aminopeptidase N family protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, peptidase_M61, PDZ; 2.39A {Idiomarina loihiensis L2TR} Length = 597

 Score = 41.5 bits (96), Expect = 7e-04
 Identities = 12/63 (19%), Positives = 28/63 (44%), Gaps = 3/63 (4%)

Query: 603 GAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKNGSISLHI 662
              G+ + ++  +  A   G L  GD+I+AI+     + +    +  +      ++++H 
Sbjct: 494 SPQGLDVLNVYHDESAYHAG-LSAGDKIIAIDHLQATEQSVKRILERYIP--GDTVTIHA 550

Query: 663 CRR 665
            RR
Sbjct: 551 FRR 553

>2hga_A Conserved protein MTH1368; GFT structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: b.36.1.6 Length = 125

 Score = 38.7 bits (90), Expect = 8e-04
 Identities = 15/59 (25%), Positives = 23/59 (38%), Gaps = 3/59 (5%)

Query: 606 GIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKNGSISLHICR 664
           G+ I S++    A     L  G  I +ING    +LT   A  L        I++   +
Sbjct: 26  GVQIDSVVPGSPA--SKVLTPGLVIESINGMPTSNLTTYSAA-LKTISVGEVINITTDQ 81

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	671
3gsl_A	196	Disks large homolog 4; PDZ domain, tandem, PSD-95,	99.93
3r0h_A	206	INAD, inactivation-NO-after-potential D protein; p	99.92
2qt5_A	200	Glutamate receptor-interacting protein 1; PDZ-pept	99.91
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	99.88
1p1d_A	196	PDZ45, glutamate receptor interacting protein; PDZ	99.88
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	99.84
1w9e_A	166	Syntenin 1; cell adhesion, adhesion/complex, PDZ d	99.79
3suz_A	388	Amyloid beta A4 precursor protein-binding family 2	99.79
3rle_A	209	Golgi reassembly-stacking protein 2; PDZ, tether,	99.71
4a8c_A	436	Periplasmic PH-dependent serine endoprotease DEGQ;	99.68
3pv2_A	451	DEGQ; trypsin fold, PDZ domain, chaperone protease	99.58
1i16_A	130	Interleukin 16, LCF; cytokine, lymphocyte chemoatt	99.55
3b76_A	118	E3 ubiquitin-protein ligase LNX; PDZ, bound ligand	99.52
3gge_A	95	PDZ domain-containing protein GIPC2; structural ge	99.52
2d92_A	108	INAD-like protein; PDZ domain, inadl protein, hina	99.5
1r6j_A	82	Syntenin 1; PDZ, membrane protein; 0.73A {Homo sap	99.5
2iwo_A	120	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	99.5
2fne_A	117	Multiple PDZ domain protein; structural protein, s	99.5
1wi4_A	109	Synip, syntaxin binding protein 4; syntaxin4-inter	99.49
1d5g_A	96	Human phosphatase HPTP1E; protein-peptide complex,	99.49
1wf8_A	107	Neurabin-I; PDZ domain, structural genomics, NPPSF	99.49
2i1n_A	102	Discs, large homolog 3; DLG3, PDZ, PDZ domain, sig	99.49
2fe5_A	94	Presynaptic protein SAP102; PDZ domain, DLG3, huma	99.49
2db5_A	128	INAD-like protein; PDZ domain, hinadl, PALS1- asso	99.48
2awx_A	105	Synapse associated protein 97; membrane protein, s	99.48
2jik_A	101	Synaptojanin-2 binding protein; transmembrane, out	99.48
2vwr_A	95	Ligand of NUMB protein X 2; protein-binding, metal	99.48
3cbz_A	108	Dishevelled-2; PDZ domain, phage derived high affi	99.47
1um1_A	110	KIAA1849 protein, RSGI RUH-007; PDZ domain, human	99.47
2byg_A	117	Channel associated protein of synapse-110; DLG2, P	99.47
3axa_A	106	Afadin, nectin-3, protein AF-6; PDZ domain, fusion	99.47
1uhp_A	107	Hypothetical protein KIAA1095; PDZ domain, semapho	99.47
2qg1_A	92	Multiple PDZ domain protein; MPDZ, MUPP1, structur	99.46
1wha_A	105	KIAA0147 protein, scribble; PDZ domain, cellular s	99.46
2q9v_A	90	Membrane-associated guanylate kinase, WW and PDZ c	99.45
3egg_C	170	Spinophilin; PP1, serine/threonine phosphatase, po	99.45
1wfg_A	131	Regulating synaptic membrane exocytosis protein 2;	99.45
1q7x_A	108	PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, str	99.45
2g5m_B	113	Neurabin-2; spinophilin, PDZ domain, CNS, synaptic	99.45
1m5z_A	91	GRIP, AMPA receptor interacting protein; six beta-	99.44
1ueq_A	123	Membrane associated guanylate kinase inverted-2 (M	99.44
1uep_A	103	Membrane associated guanylate kinase inverted-2 (M	99.44
1g9o_A	91	NHE-RF; PDZ domain, complex, signaling protein; 1.	99.44
2dkr_A	93	LIN-7 homolog B; LIN-7B, PDZ, structural genomics,	99.44
1ufx_A	103	KIAA1526 protein; PDZ domain, structural genomics,	99.44
3o46_A	93	Maguk P55 subfamily member 7; PDZ domain, structur	99.44
3gge_A	95	PDZ domain-containing protein GIPC2; structural ge	99.43
2he4_A	90	Na(+)/H(+) exchange regulatory cofactor NHE-RF2; p	99.43
2o2t_A	117	Multiple PDZ domain protein; structural protein, s	99.43
1ujd_A	117	KIAA0559 protein; PDZ domain, structural genomics,	99.43
2i04_A	85	Membrane-associated guanylate kinase, WW and PDZ d	99.43
1kwa_A	88	Hcask/LIN-2 protein; PDZ domain, neurexin, syndeca	99.43
1x6d_A	119	Interleukin-16; PDZ domain, lymphocyte chemoattrac	99.42
4amh_A	106	Disks large homolog 1; permutation, protein foldin	99.42
2vwr_A	95	Ligand of NUMB protein X 2; protein-binding, metal	99.42
2eno_A	120	Synaptojanin-2-binding protein; mitochondrial oute	99.42
2jre_A	108	C60-1 PDZ domain peptide; de novo protein; NMR {Sy	99.42
2jil_A	97	GRIP1 protein, glutamate receptor interacting prot	99.42
2opg_A	98	Multiple PDZ domain protein; structural protein, s	99.41
1n7e_A	97	AMPA receptor interacting protein GRIP; PDZ, prote	99.41
3i4w_A	104	Disks large homolog 4; alpha and beta protein, alt	99.41
3b76_A	118	E3 ubiquitin-protein ligase LNX; PDZ, bound ligand	99.41
2kpk_A	129	Membrane-associated guanylate kinase, WW and PDZ c	99.4
1qav_A	90	Alpha-1 syntrophin (residues 77-171); beta-finger,	99.4
2ehr_A	117	INAD-like protein; PDZ domain, inadl protein, hina	99.4
2dc2_A	103	GOPC, golgi associated PDZ and coiled-coil motif c	99.4
2daz_A	124	INAD-like protein; PDZ domain, inadl protein, hina	99.4
2f5y_A	91	Regulator of G-protein signalling 3 isoform 1; PDZ	99.4
1ihj_A	98	INAD; intermolecular disulfide bond, PDZ domain, s	99.4
1r6j_A	82	Syntenin 1; PDZ, membrane protein; 0.73A {Homo sap	99.4
3l4f_D	132	SH3 and multiple ankyrin repeat domains protein 1;	99.4
2uzc_A	88	Human pdlim5, PDZ and LIM domain 5; metal-binding,	99.4
1uju_A	111	Scribble; PDZ domain, cellular signaling, structur	99.39
2r4h_A	112	Membrane-associated guanylate kinase, WW and PDZ c	99.39
2iwo_A	120	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	99.39
2koj_A	111	Partitioning defective 3 homolog; PDZ domain, stru	99.39
1rgw_A	85	ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK,	99.39
2pa1_A	87	PDZ and LIM domain protein 2; PDZ domain, structur	99.39
1d5g_A	96	Human phosphatase HPTP1E; protein-peptide complex,	99.38
4e34_A	87	Golgi-associated PDZ and coiled-coil motif-contai	99.38
1wi2_A	104	Riken cDNA 2700099C19; structural genomics, riken	99.38
2vsp_A	91	PDZ domain-containing protein 1; membrane, cytopla	99.38
2djt_A	104	Unnamed protein product; PDZ domain, structural ge	99.38
3hpk_A	125	Protein interacting with PRKCA 1; oxidized, PDZ do	99.38
1wfg_A	131	Regulating synaptic membrane exocytosis protein 2;	99.38
2dlu_A	111	INAD-like protein; PDZ domain, inadl protein, hina	99.38
2fe5_A	94	Presynaptic protein SAP102; PDZ domain, DLG3, huma	99.38
1wg6_A	127	Hypothetical protein (riken cDNA 2810455B10); stru	99.38
2v90_A	96	PDZ domain-containing protein 3; membrane, protein	99.38
2q3g_A	89	PDZ and LIM domain protein 7; structural genomics,	99.37
1x5q_A	110	LAP4 protein; PDZ domain, scribble homolog protein	99.37
2ego_A	96	General receptor for phosphoinositides 1- associat	99.37
3e17_A	88	Tight junction protein ZO-2; domain swapping, alte	99.37
2awx_A	105	Synapse associated protein 97; membrane protein, s	99.37
3r68_A	95	Na(+)/H(+) exchange regulatory cofactor NHE-RF3; P	99.37
3qe1_A	107	Sorting nexin-27, G protein-activated inward RECT	99.37
2fne_A	117	Multiple PDZ domain protein; structural protein, s	99.37
3o46_A	93	Maguk P55 subfamily member 7; PDZ domain, structur	99.37
1m5z_A	91	GRIP, AMPA receptor interacting protein; six beta-	99.36
2qg1_A	92	Multiple PDZ domain protein; MPDZ, MUPP1, structur	99.36
1v62_A	117	KIAA1719 protein; structural genomics, synaptic tr	99.36
2d92_A	108	INAD-like protein; PDZ domain, inadl protein, hina	99.36
2he4_A	90	Na(+)/H(+) exchange regulatory cofactor NHE-RF2; p	99.36
3nfk_A	107	Tyrosine-protein phosphatase non-receptor type 4;	99.36
2csj_A	117	TJP2 protein; PDZ domain, structural genomics, NPP	99.36
2qkv_A	96	Inactivation-NO-after-potential D protein; PDZ dom	99.36
2w4f_A	97	Protein LAP4; structural protein, phosphoprotein,	99.36
1kwa_A	88	Hcask/LIN-2 protein; PDZ domain, neurexin, syndeca	99.35
2jik_A	101	Synaptojanin-2 binding protein; transmembrane, out	99.35
1i16_A	130	Interleukin 16, LCF; cytokine, lymphocyte chemoatt	99.35
2i1n_A	102	Discs, large homolog 3; DLG3, PDZ, PDZ domain, sig	99.35
2dmz_A	129	INAD-like protein; PDZ domain, inadl protein, hina	99.35
3axa_A	106	Afadin, nectin-3, protein AF-6; PDZ domain, fusion	99.35
1ky9_A	448	Protease DO, DEGP, HTRA; protein quality control,	99.35
2ejy_A	97	55 kDa erythrocyte membrane protein; GPC, maguk, P	99.35
1q3o_A	109	Shank1; PDZ, GKAP, peptide binding protein; 1.80A	99.35
1qav_A	90	Alpha-1 syntrophin (residues 77-171); beta-finger,	99.35
1um1_A	110	KIAA1849 protein, RSGI RUH-007; PDZ domain, human	99.34
2db5_A	128	INAD-like protein; PDZ domain, hinadl, PALS1- asso	99.34
1nf3_C	128	PAR-6B; semi-CRIB motif, switch I and II, PDZ doma	99.34
2yt7_A	101	Amyloid beta A4 precursor protein-binding family A	99.34
2la8_A	106	Inactivation-NO-after-potential D protein, KON-TI	99.34
1wf8_A	107	Neurabin-I; PDZ domain, structural genomics, NPPSF	99.34
2dc2_A	103	GOPC, golgi associated PDZ and coiled-coil motif c	99.34
4e34_A	87	Golgi-associated PDZ and coiled-coil motif-contai	99.34
1ihj_A	98	INAD; intermolecular disulfide bond, PDZ domain, s	99.34
2kom_A	121	Partitioning defective 3 homolog; PAR-3B, PDZ doma	99.34
3i4w_A	104	Disks large homolog 4; alpha and beta protein, alt	99.33
2byg_A	117	Channel associated protein of synapse-110; DLG2, P	99.33
2jil_A	97	GRIP1 protein, glutamate receptor interacting prot	99.33
1mfg_A	95	ERB-B2 interacting protein; PDZ domain, protein-pe	99.33
2fcf_A	103	Multiple PDZ domain protein; adaptor molecule, pro	99.33
2d90_A	102	PDZ domain containing protein 1; structural genomi	99.33
1v62_A	117	KIAA1719 protein; structural genomics, synaptic tr	99.33
2dm8_A	116	INAD-like protein; PDZ domain, inadl protein, hina	99.33
2cs5_A	119	Tyrosine-protein phosphatase, non-receptor type 4;	99.32
1uhp_A	107	Hypothetical protein KIAA1095; PDZ domain, semapho	99.32
3egg_C	170	Spinophilin; PP1, serine/threonine phosphatase, po	99.32
1n7e_A	97	AMPA receptor interacting protein GRIP; PDZ, prote	99.32
2uzc_A	88	Human pdlim5, PDZ and LIM domain 5; metal-binding,	99.32
3sfj_A	104	TAX1-binding protein 3; PDZ:peptide complex, signa	99.32
1ujd_A	117	KIAA0559 protein; PDZ domain, structural genomics,	99.32
2kv8_A	83	RGS12, regulator of G-protein signaling 12; PDZ do	99.32
3ngh_A	106	PDZ domain-containing protein 1; adaptor protein,	99.32
3cbz_A	108	Dishevelled-2; PDZ domain, phage derived high affi	99.32
3soe_A	113	Membrane-associated guanylate kinase, WW and PDZ c	99.32
2pkt_A	91	PDZ and LIM domain protein 1; PDZ domain, structur	99.32
1g9o_A	91	NHE-RF; PDZ domain, complex, signaling protein; 1.	99.32
2eeg_A	94	PDZ and LIM domain protein 4; PDZ domain, structur	99.32
1uew_A	114	Membrane associated guanylate kinase inverted-2 (M	99.32
2o2t_A	117	Multiple PDZ domain protein; structural protein, s	99.32
2jxo_A	98	Ezrin-radixin-moesin-binding phosphoprotein 50; nh	99.32
2r4h_A	112	Membrane-associated guanylate kinase, WW and PDZ c	99.32
2eei_A	106	PDZ domain-containing protein 1; regulatory factor	99.32
1q7x_A	108	PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, str	99.31
1va8_A	113	Maguk P55 subfamily member 5; PDZ domain, palmitoy	99.31
2dkr_A	93	LIN-7 homolog B; LIN-7B, PDZ, structural genomics,	99.31
1nf3_C	128	PAR-6B; semi-CRIB motif, switch I and II, PDZ doma	99.31
2eeh_A	100	PDZ domain-containing protein 7; structural genomi	99.31
1va8_A	113	Maguk P55 subfamily member 5; PDZ domain, palmitoy	99.31
2iwq_A	123	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	99.31
1tp5_A	119	Presynaptic density protein 95; PDZ-peptide ligand	99.31
2pa1_A	87	PDZ and LIM domain protein 2; PDZ domain, structur	99.31
3gsl_A	196	Disks large homolog 4; PDZ domain, tandem, PSD-95,	99.31
1ueq_A	123	Membrane associated guanylate kinase inverted-2 (M	99.31
2dls_A	93	PDZ-rhogef, RHO guanine nucleotide exchange factor	99.31
2q9v_A	90	Membrane-associated guanylate kinase, WW and PDZ c	99.31
2opg_A	98	Multiple PDZ domain protein; structural protein, s	99.3
2i04_A	85	Membrane-associated guanylate kinase, WW and PDZ d	99.3
2iwn_A	97	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	99.3
2e7k_A	91	Maguk P55 subfamily member 2; PDZ domain, MPP2 pro	99.3
2daz_A	124	INAD-like protein; PDZ domain, inadl protein, hina	99.3
1v6b_A	118	Harmonin isoform A1; structural genomics, usher sy	99.3
3l4f_D	132	SH3 and multiple ankyrin repeat domains protein 1;	99.3
1wfv_A	103	Membrane associated guanylate kinase inverted-2; a	99.3
4amh_A	106	Disks large homolog 1; permutation, protein foldin	99.3
2h2b_A	107	Tight junction protein ZO-1; PDZ domain, phage der	99.3
1wi4_A	109	Synip, syntaxin binding protein 4; syntaxin4-inter	99.29
1wha_A	105	KIAA0147 protein, scribble; PDZ domain, cellular s	99.29
2v90_A	96	PDZ domain-containing protein 3; membrane, protein	99.29
1n7t_A	103	99-MER peptide of densin-180-like protein; PDZ dom	99.29
3nfk_A	107	Tyrosine-protein phosphatase non-receptor type 4;	99.29
3e17_A	88	Tight junction protein ZO-2; domain swapping, alte	99.29
1z87_A	263	Alpha-1-syntrophin; protein binding; NMR {Mus musc	99.29
2q3g_A	89	PDZ and LIM domain protein 7; structural genomics,	99.29
3hpk_A	125	Protein interacting with PRKCA 1; oxidized, PDZ do	99.29
2g5m_B	113	Neurabin-2; spinophilin, PDZ domain, CNS, synaptic	99.29
2jre_A	108	C60-1 PDZ domain peptide; de novo protein; NMR {Sy	99.29
2ego_A	96	General receptor for phosphoinositides 1- associat	99.29
1um7_A	113	Synapse-associated protein 102; PDZ, discs large h	99.28
3bpu_A	88	Membrane-associated guanylate kinase, WW and PDZ c	99.28
1uep_A	103	Membrane associated guanylate kinase inverted-2 (M	99.28
1uju_A	111	Scribble; PDZ domain, cellular signaling, structur	99.28
1v5q_A	122	GRIP1 homolog, glutamate receptor interacting prot	99.28
1rgw_A	85	ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK,	99.28
2cs5_A	119	Tyrosine-protein phosphatase, non-receptor type 4;	99.27
1wf7_A	103	Enigma homologue protein; PDZ domain, structural g	99.27
3r0h_A	206	INAD, inactivation-NO-after-potential D protein; p	99.27
1vb7_A	94	PDZ and LIM domain 2; PDZ domain PDZ-LIM protein,	99.27
2ehr_A	117	INAD-like protein; PDZ domain, inadl protein, hina	99.27
2eno_A	120	Synaptojanin-2-binding protein; mitochondrial oute	99.27
2vsp_A	91	PDZ domain-containing protein 1; membrane, cytopla	99.27
3r68_A	95	Na(+)/H(+) exchange regulatory cofactor NHE-RF3; P	99.27
1ufx_A	103	KIAA1526 protein; PDZ domain, structural genomics,	99.27
1wi2_A	104	Riken cDNA 2700099C19; structural genomics, riken	99.27
3khf_A	99	Microtubule-associated serine/threonine-protein ki	99.26
2ejy_A	97	55 kDa erythrocyte membrane protein; GPC, maguk, P	99.26
2djt_A	104	Unnamed protein product; PDZ domain, structural ge	99.26
2kpk_A	129	Membrane-associated guanylate kinase, WW and PDZ c	99.26
2gzv_A	114	PRKCA-binding protein; protein kinase C, PDZ domai	99.26
2vsv_A	109	Rhophilin-2; scaffold protein, RHO GTPase binding,	99.26
2f5y_A	91	Regulator of G-protein signalling 3 isoform 1; PDZ	99.26
1x6d_A	119	Interleukin-16; PDZ domain, lymphocyte chemoattrac	99.26
2w4f_A	97	Protein LAP4; structural protein, phosphoprotein,	99.25
1qau_A	112	Neuronal nitric oxide synthase (residues 1-130); b	99.25
2koj_A	111	Partitioning defective 3 homolog; PDZ domain, stru	99.25
1wg6_A	127	Hypothetical protein (riken cDNA 2810455B10); stru	99.24
3ngh_A	106	PDZ domain-containing protein 1; adaptor protein,	99.24
2yuy_A	126	RHO GTPase activating protein 21; PDZ domain, stru	99.24
2pkt_A	91	PDZ and LIM domain protein 1; PDZ domain, structur	99.24
3qe1_A	107	Sorting nexin-27, G protein-activated inward RECT	99.24
1uez_A	101	KIAA1526 protein; PDZ domain, structural genomics,	99.24
2d90_A	102	PDZ domain containing protein 1; structural genomi	99.24
2csj_A	117	TJP2 protein; PDZ domain, structural genomics, NPP	99.23
1whd_A	100	RGS3, regulator of G-protein signaling 3; PDZ doma	99.23
2dlu_A	111	INAD-like protein; PDZ domain, inadl protein, hina	99.23
2yt7_A	101	Amyloid beta A4 precursor protein-binding family A	99.23
2vz5_A	139	TAX1-binding protein 3; WNT signaling pathway, pro	99.23
1x5q_A	110	LAP4 protein; PDZ domain, scribble homolog protein	99.23
2la8_A	106	Inactivation-NO-after-potential D protein, KON-TI	99.23
1uew_A	114	Membrane associated guanylate kinase inverted-2 (M	99.23
1uez_A	101	KIAA1526 protein; PDZ domain, structural genomics,	99.23
3k1r_A	192	Harmonin; protein-protein complex, alternative spl	99.22
1q3o_A	109	Shank1; PDZ, GKAP, peptide binding protein; 1.80A	99.22
2dmz_A	129	INAD-like protein; PDZ domain, inadl protein, hina	99.22
2eeh_A	100	PDZ domain-containing protein 7; structural genomi	99.22
2qkv_A	96	Inactivation-NO-after-potential D protein; PDZ dom	99.22
1tp5_A	119	Presynaptic density protein 95; PDZ-peptide ligand	99.22
1ujv_A	96	Membrane associated guanylate kinase inverted-2 (M	99.21
2e7k_A	91	Maguk P55 subfamily member 2; PDZ domain, MPP2 pro	99.21
2kjd_A	128	Sodium/hydrogen exchange regulatory cofactor NHE-	99.21
2edp_A	100	Fragment, shroom family member 4; APX/shroom famil	99.21
1uit_A	117	Human discs large 5 protein; PDZ domain, HDLG5, ma	99.2
2h2b_A	107	Tight junction protein ZO-1; PDZ domain, phage der	99.2
1uit_A	117	Human discs large 5 protein; PDZ domain, HDLG5, ma	99.2
2eeg_A	94	PDZ and LIM domain protein 4; PDZ domain, structur	99.2
1y7n_A	90	Amyloid beta A4 precursor protein-binding family A	99.2
2edz_A	114	PDZ domain-containing protein 1; CFTR-associated p	99.2
4fln_A	539	Protease DO-like 2, chloroplastic; protease, DEG,	99.2
2edv_A	96	FERM and PDZ domain-containing protein 1; cytoskel	99.2
1wfv_A	103	Membrane associated guanylate kinase inverted-2; a	99.19
3k1r_A	192	Harmonin; protein-protein complex, alternative spl	99.19
2dm8_A	116	INAD-like protein; PDZ domain, inadl protein, hina	99.19
1wf7_A	103	Enigma homologue protein; PDZ domain, structural g	99.19
2dls_A	93	PDZ-rhogef, RHO guanine nucleotide exchange factor	99.18
1wif_A	126	RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, s	99.18
1vb7_A	94	PDZ and LIM domain 2; PDZ domain PDZ-LIM protein,	99.18
2iwn_A	97	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	99.18
2kv8_A	83	RGS12, regulator of G-protein signaling 12; PDZ do	99.18
2edp_A	100	Fragment, shroom family member 4; APX/shroom famil	99.17
2eei_A	106	PDZ domain-containing protein 1; regulatory factor	99.17
1z87_A	263	Alpha-1-syntrophin; protein binding; NMR {Mus musc	99.17
3bpu_A	88	Membrane-associated guanylate kinase, WW and PDZ c	99.17
2z17_A	104	Pleckstrin homology SEC7 and coiled-coil domains-	99.17
1wh1_A	124	KIAA1095 protein; PDZ domain, structural genomics,	99.17
1mfg_A	95	ERB-B2 interacting protein; PDZ domain, protein-pe	99.17
2kom_A	121	Partitioning defective 3 homolog; PAR-3B, PDZ doma	99.16
3khf_A	99	Microtubule-associated serine/threonine-protein ki	99.16
3tsv_A	124	Tight junction protein ZO-1; PDZ, scaffolding, JAM	99.15
3soe_A	113	Membrane-associated guanylate kinase, WW and PDZ c	99.15
1p1d_A	196	PDZ45, glutamate receptor interacting protein; PDZ	99.15
2d8i_A	114	T-cell lymphoma invasion and metastasis 1 variant;	99.14
2qt5_A	200	Glutamate receptor-interacting protein 1; PDZ-pept	99.14
2fcf_A	103	Multiple PDZ domain protein; adaptor molecule, pro	99.14
3cyy_A	92	Tight junction protein ZO-1; protein-ligand comple	99.14
1vae_A	111	Rhophilin 2, rhophilin, RHO GTPase binding protein	99.14
1n7t_A	103	99-MER peptide of densin-180-like protein; PDZ dom	99.14
1um7_A	113	Synapse-associated protein 102; PDZ, discs large h	99.14
2gzv_A	114	PRKCA-binding protein; protein kinase C, PDZ domai	99.14
2qbw_A	195	PDZ-fibronectin fusion protein; fibronectin PDZ, u	99.13
3kzd_A	94	TIAM-1, T-lymphoma invasion and metastasis-inducin	99.13
1v6b_A	118	Harmonin isoform A1; structural genomics, usher sy	99.12
2jxo_A	98	Ezrin-radixin-moesin-binding phosphoprotein 50; nh	99.12
2iwq_A	123	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	99.11
1v5l_A	103	PDZ and LIM domain 3; actinin alpha 2 associated L	99.11
1b8q_A	127	Protein (neuronal nitric oxide synthase); PDZ doma	99.11
3sfj_A	104	TAX1-binding protein 3; PDZ:peptide complex, signa	99.11
1y7n_A	90	Amyloid beta A4 precursor protein-binding family A	99.11
1v5q_A	122	GRIP1 homolog, glutamate receptor interacting prot	99.11
1x5n_A	114	Harmonin; PDZ domain, usher syndrome 1C protein, a	99.1
2lob_A	112	Golgi-associated PDZ and coiled-coil motif-contai	98.69
1wif_A	126	RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, s	99.1
2rcz_A	81	Tight junction protein ZO-1; PDZ, domain-swapping,	99.1
1uf1_A	128	KIAA1526 protein; PDZ domain, structural genomics,	99.09
3cyy_A	92	Tight junction protein ZO-1; protein-ligand comple	99.09
2eaq_A	90	LIM domain only protein 7; conserved hypothetical	99.09
1qau_A	112	Neuronal nitric oxide synthase (residues 1-130); b	99.09
2vsv_A	109	Rhophilin-2; scaffold protein, RHO GTPase binding,	99.08
2edz_A	114	PDZ domain-containing protein 1; CFTR-associated p	99.08
2vz5_A	139	TAX1-binding protein 3; WNT signaling pathway, pro	99.07
1x5n_A	114	Harmonin; PDZ domain, usher syndrome 1C protein, a	99.06
3tsv_A	124	Tight junction protein ZO-1; PDZ, scaffolding, JAM	99.06
3kzd_A	94	TIAM-1, T-lymphoma invasion and metastasis-inducin	99.05
1ujv_A	96	Membrane associated guanylate kinase inverted-2 (M	99.05
2edv_A	96	FERM and PDZ domain-containing protein 1; cytoskel	99.04
2z17_A	104	Pleckstrin homology SEC7 and coiled-coil domains-	99.04
3qik_A	101	Phosphatidylinositol 3,4,5-trisphosphate-dependen	99.04
2lob_A	112	Golgi-associated PDZ and coiled-coil motif-contai	98.61
2rcz_A	81	Tight junction protein ZO-1; PDZ, domain-swapping,	99.04
3shw_A	468	Tight junction protein ZO-1; PDZ-SH3-GUK supramodu	99.03
2yuy_A	126	RHO GTPase activating protein 21; PDZ domain, stru	99.02
1whd_A	100	RGS3, regulator of G-protein signaling 3; PDZ doma	99.01
3tsz_A	391	Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffol	99.01
2krg_A	216	Na(+)/H(+) exchange regulatory cofactor NHE-RF1; a	99.01
2eaq_A	90	LIM domain only protein 7; conserved hypothetical	99.0
2qbw_A	195	PDZ-fibronectin fusion protein; fibronectin PDZ, u	99.0
1uf1_A	128	KIAA1526 protein; PDZ domain, structural genomics,	98.99
1w9e_A	166	Syntenin 1; cell adhesion, adhesion/complex, PDZ d	98.98
3shw_A	468	Tight junction protein ZO-1; PDZ-SH3-GUK supramodu	98.98
1v5l_A	103	PDZ and LIM domain 3; actinin alpha 2 associated L	98.97
1b8q_A	127	Protein (neuronal nitric oxide synthase); PDZ doma	98.97
2kjd_A	128	Sodium/hydrogen exchange regulatory cofactor NHE-	98.97
2d8i_A	114	T-cell lymphoma invasion and metastasis 1 variant;	98.97
3tsz_A	391	Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffol	98.9
2yub_A	118	LIMK-2, LIM domain kinase 2; PDZ domain, structura	98.9
3suz_A	388	Amyloid beta A4 precursor protein-binding family 2	98.87
1vae_A	111	Rhophilin 2, rhophilin, RHO GTPase binding protein	98.87
2yub_A	118	LIMK-2, LIM domain kinase 2; PDZ domain, structura	98.83
3qik_A	101	Phosphatidylinositol 3,4,5-trisphosphate-dependen	98.83
2krg_A	216	Na(+)/H(+) exchange regulatory cofactor NHE-RF1; a	98.81
1wh1_A	124	KIAA1095 protein; PDZ domain, structural genomics,	98.8
2kjp_A	91	Uncharacterized protein YLBL; mixed alpha-beta pro	98.52
2l97_A	134	HTRA, putative serine protease; HTRA-PDZ, protein	98.51
3i18_A	100	LMO2051 protein; alpha-beta protein, structural ge	98.5
2i6v_A	87	General secretion pathway protein C; EPSC, GSPC, P	98.5
3id1_A	95	Regulator of sigma E protease; hydrolase, cell inn	98.47
2zpm_A	91	Regulator of sigma E protease; metalloproteinase,	98.47
2pzd_A	113	Serine protease HTRA2; PDZ domain, apoptosis, mito	98.47
2kl1_A	94	YLBL protein; structure genomics, structural genom	98.44
2l97_A	134	HTRA, putative serine protease; HTRA-PDZ, protein	98.4
2p3w_A	112	Probable serine protease HTRA3; PDZ domain, phage	98.36
1fc6_A	388	Photosystem II D1 protease; D1 C-terminal processi	98.31
3rle_A	209	Golgi reassembly-stacking protein 2; PDZ, tether,	98.31
2i4s_A	105	General secretion pathway protein C; EPSC, GSPC, P	98.24
2pzd_A	113	Serine protease HTRA2; PDZ domain, apoptosis, mito	98.2
2i6v_A	87	General secretion pathway protein C; EPSC, GSPC, P	98.18
1te0_A	318	Protease DEGS; two domains, serine protease, PDZ,	98.15
1y8t_A	324	Hypothetical protein RV0983; serine protease, stru	98.15
3i18_A	100	LMO2051 protein; alpha-beta protein, structural ge	98.14
2kjp_A	91	Uncharacterized protein YLBL; mixed alpha-beta pro	98.11
3stj_A	345	Protease DEGQ; serine protease, PDZ domain, protea	98.1
1fc6_A	388	Photosystem II D1 protease; D1 C-terminal processi	98.1
3stj_A	345	Protease DEGQ; serine protease, PDZ domain, protea	98.05
2i4s_A	105	General secretion pathway protein C; EPSC, GSPC, P	98.04
2p3w_A	112	Probable serine protease HTRA3; PDZ domain, phage	98.04
2hga_A	125	Conserved protein MTH1368; GFT structural genomics	98.03
3id1_A	95	Regulator of sigma E protease; hydrolase, cell inn	98.01
2kl1_A	94	YLBL protein; structure genomics, structural genom	98.01
3qo6_A	348	Protease DO-like 1, chloroplastic; protease, HTRA,	98.01
4fgm_A	597	Aminopeptidase N family protein; structural genomi	97.99
1lcy_A	325	HTRA2 serine protease; apoptosis, PDZ domain, casp	97.98
2zpm_A	91	Regulator of sigma E protease; metalloproteinase,	97.97
3k50_A	403	Putative S41 protease; structural genomics, joint	97.94
1te0_A	318	Protease DEGS; two domains, serine protease, PDZ,	97.91
4fgm_A	597	Aminopeptidase N family protein; structural genomi	97.9
3pv2_A	451	DEGQ; trypsin fold, PDZ domain, chaperone protease	97.9
1y8t_A	324	Hypothetical protein RV0983; serine protease, stru	97.87
4a8c_A	436	Periplasmic PH-dependent serine endoprotease DEGQ;	97.85
3k50_A	403	Putative S41 protease; structural genomics, joint	97.84
3qo6_A	348	Protease DO-like 1, chloroplastic; protease, HTRA,	97.76
2hga_A	125	Conserved protein MTH1368; GFT structural genomics	97.63
3num_A	332	Serine protease HTRA1; DEGP, hydrolase; 2.75A {Hom	97.59
1lcy_A	325	HTRA2 serine protease; apoptosis, PDZ domain, casp	97.59
1ky9_A	448	Protease DO, DEGP, HTRA; protein quality control,	97.39
3num_A	332	Serine protease HTRA1; DEGP, hydrolase; 2.75A {Hom	97.27
1k32_A	1045	Tricorn protease; protein degradation, substrate g	97.24
1k32_A	1045	Tricorn protease; protein degradation, substrate g	96.87
4fln_A	539	Protease DO-like 2, chloroplastic; protease, DEG,	96.76

>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A

Probab=99.93  E-value=1.6e-24  Score=209.93  Aligned_cols=185  Identities=29%  Similarity=0.485  Sum_probs=153.5

Q ss_pred             CeEEEEEEeCCCCCcccEEEeeecCCCC-CCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhc
Q psy1156         387 GQTMVRVNRRDFNEELGIYIAKIKNSSE-GNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISS  465 (671)
Q Consensus       387 ~~~~V~L~k~~~~~~LGfsI~gg~~~~~-g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~  465 (671)
                      +++.|+|.+..  ++|||+|.++.+.+. +...|++|..|.++|||+++|+|++||+|++|||+++.++++.+++.+++.
T Consensus         5 ~~~~v~l~~~~--~~lG~~i~~g~~~~~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~   82 (196)
T 3gsl_A            5 EYEEITLERGN--SGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKE   82 (196)
T ss_dssp             EEEEEEEECBT--TBSSEEEECCTTSCTTSSCCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHT
T ss_pred             EEEEEEEEECC--CCCCEEEEcccCCcccCCCCCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Confidence            56788998854  789999999876532 112789999999999999999999999999999999999999999999998


Q ss_pred             CCCeEEEEEEeCCcccccccccccccccccccccccccccccCCcccCCcccchhhhhhhccccccccchhhhhhccccc
Q psy1156         466 GPLNMDLLISRTSLKKSNAENEYNESHSREKKSKETRFSLDKQNDFESSNEQDKNNQKRLFQKNCHSINNKLLRKAIIST  545 (671)
Q Consensus       466 ~g~~V~L~V~R~~~~~~~a~~~~~~~~s~~~~~~~~~ss~d~e~~~~ssp~~~k~s~~~~~q~~~~s~~~~~~r~~v~s~  545 (671)
                      .+..+.|+|.|.+....                                                               
T Consensus        83 ~g~~v~l~v~r~~~~~~---------------------------------------------------------------   99 (196)
T 3gsl_A           83 AGSIVRLYVMRRKPPAE---------------------------------------------------------------   99 (196)
T ss_dssp             SCSEEEEEEEEECCCCE---------------------------------------------------------------
T ss_pred             CCCcEEEEEEecCCCcc---------------------------------------------------------------
Confidence            89999999988432000                                                               


Q ss_pred             CCCCCchhhhhhccCCccCCCCCCCCcccceeeEEEeeCCCCCcccEEEecCCCCCC--CCcceeEEEeCCCCHHhHhCC
Q psy1156         546 GSISGDEEETILTSTNFCTLPRRPRSAICTFHTIVFEKGPGKKGLGFTIVGGKDSPR--GAIGIFIKSILDNGQAAEDGR  623 (671)
Q Consensus       546 ~s~s~d~~~s~~~s~~~~~lP~~p~s~~~~~~~V~L~K~~g~~~LGfsL~Gg~ds~~--g~~GVfIssV~pgSpAaraGr  623 (671)
                                                   ....+.+.+..  .+|||.+.++.....  ...|++|..|.++|+|+++|+
T Consensus       100 -----------------------------~~~~v~l~~~~--~~lG~~~~~~~~~~~~~~~~gv~V~~V~~gs~A~~aG~  148 (196)
T 3gsl_A          100 -----------------------------KVMEIKLIKGP--KGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGR  148 (196)
T ss_dssp             -----------------------------EEEEEEEEEBT--TBSCEEEEESBTSCSBTTBCCEEEEEECTTSHHHHHCC
T ss_pred             -----------------------------ccEEEEEecCC--CCceEEEEccCCCcCCCCCCCEEEEEECCCChHHhcCC
Confidence                                         11245666665  589999988765432  245899999999999999999


Q ss_pred             CCCCCEEEEECCeecCCCCHHHHHHHHHhcCCCcEEEEEEeCCCC
Q psy1156         624 LKEGDEILAINGQVCHDLTHLEAISLFKTIKNGSISLHICRRLKS  668 (671)
Q Consensus       624 Lr~GDrILeVNG~sV~~lSheEAV~lLK~sg~~~VtL~V~Rr~~~  668 (671)
                      |++||+|++|||++|.++++.+++.+|+..+ +.|.|+|.|+...
T Consensus       149 L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~-~~v~l~v~R~~~~  192 (196)
T 3gsl_A          149 LQIGDKILAVNSVGLEDVMHEDAVAALKNTY-DVVYLKVAKPSNA  192 (196)
T ss_dssp             CCTTCEEEEETTEECSSCBHHHHHHHHHSCC-EEEEEEEEEESCC
T ss_pred             CCCCCEEEEECCCcCCCCCHHHHHHHHHcCC-CeEEEEEeCCCCc
Confidence            9999999999999999999999999999874 7899999987643

>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster}

Probab=99.92  E-value=8.1e-24  Score=208.04  Aligned_cols=179  Identities=20%  Similarity=0.343  Sum_probs=147.9

Q ss_pred             CCeEEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccC--CCHHHHHHHH
Q psy1156         386 EGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRG--LTMTQAKSII  463 (671)
Q Consensus       386 ~~~~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~--~s~~~av~~L  463 (671)
                      .....|.|.+.  ..+|||+|.++.+...+  .|++|..|.++|||+++|.|++||+|++|||+.+.+  +++.+++.++
T Consensus        17 ~~~~~v~~~~~--~~~lG~~i~~g~~~~~~--~g~~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~~~~   92 (206)
T 3r0h_A           17 NKKILIELKVE--KKPMGVIVCGGKNNHVT--TGCVITHVYPEGQVAADKRLKIFDHICDINGTPIHVGSMTTLKVHQLF   92 (206)
T ss_dssp             TSCEEEEEECT--TSCCCEEEECCSSSSCC--SCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECCGGGSCHHHHHHHH
T ss_pred             CCEEEEEEEeC--CCCcCEEEecccCCCCC--CCeEEEEECCCChHHhcCCCCCCCEEEEECCEEcCCCccCHHHHHHHH
Confidence            35577888885  48999999988765321  489999999999999998899999999999999999  9999999999


Q ss_pred             hcCCCe-EEEEEEeCCcccccccccccccccccccccccccccccCCcccCCcccchhhhhhhccccccccchhhhhhcc
Q psy1156         464 SSGPLN-MDLLISRTSLKKSNAENEYNESHSREKKSKETRFSLDKQNDFESSNEQDKNNQKRLFQKNCHSINNKLLRKAI  542 (671)
Q Consensus       464 ~~~g~~-V~L~V~R~~~~~~~a~~~~~~~~s~~~~~~~~~ss~d~e~~~~ssp~~~k~s~~~~~q~~~~s~~~~~~r~~v  542 (671)
                      +..+.. +.|+|.|.+....                                                            
T Consensus        93 ~~~~~~~v~l~v~R~~~~~~------------------------------------------------------------  112 (206)
T 3r0h_A           93 HTTYEKAVTLTVFRADPPEL------------------------------------------------------------  112 (206)
T ss_dssp             HSCCSSEEEEEEECCSSCCE------------------------------------------------------------
T ss_pred             HhcCCCceEEEEEecccCCC------------------------------------------------------------
Confidence            987777 9999988643100                                                            


Q ss_pred             cccCCCCCchhhhhhccCCccCCCCCCCCcccceeeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhC
Q psy1156         543 ISTGSISGDEEETILTSTNFCTLPRRPRSAICTFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDG  622 (671)
Q Consensus       543 ~s~~s~s~d~~~s~~~s~~~~~lP~~p~s~~~~~~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraG  622 (671)
                                                      ....+.+.+.. ..+|||.+.+..      .|++|.+|.++|+|+++|
T Consensus       113 --------------------------------~~~~v~l~~~~-~~~lG~~~~~~~------~gv~V~~V~~gs~A~~aG  153 (206)
T 3r0h_A          113 --------------------------------EKFNVDLMKKA-GKELGLSLSPNE------IGCTIADLIQGQYPEIDS  153 (206)
T ss_dssp             --------------------------------EEEEEEEECCT-TCCCCEEEEECS------SCEEEEEECTTSCHHHHH
T ss_pred             --------------------------------cEEEEEEecCC-CCccCeEEEcCC------ceEEEEEECCCChHHHcC
Confidence                                            01233444432 257999998543      489999999999999999


Q ss_pred             CCCCCCEEEEECCeecCCCCHHHHHHHHHhcCCCcEEEEEEeCCCC
Q psy1156         623 RLKEGDEILAINGQVCHDLTHLEAISLFKTIKNGSISLHICRRLKS  668 (671)
Q Consensus       623 rLr~GDrILeVNG~sV~~lSheEAV~lLK~sg~~~VtL~V~Rr~~~  668 (671)
                      +|++||+|++|||++|.++++.+++.+|+..+ +.|.|+|.|....
T Consensus       154 ~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~-~~v~L~V~R~~~~  198 (206)
T 3r0h_A          154 KLQRGDIITKFNGDALEGLPFQVCYALFKGAN-GKVSMEVTRPKPT  198 (206)
T ss_dssp             HCCTTCEEEEETTEECTTCCHHHHHHHHHTCC-SEEEEEEEEECCC
T ss_pred             CCCCCCEEEEECCEECCCCCHHHHHHHHHcCC-CeEEEEEEeCCCC
Confidence            99999999999999999999999999999874 7899999997654

>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus}

Probab=99.91  E-value=7.2e-23  Score=201.11  Aligned_cols=192  Identities=24%  Similarity=0.354  Sum_probs=151.5

Q ss_pred             CCeEEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhc-CCCCCCCEEEccCCeeccCCCHHHHHHHHh
Q psy1156         386 EGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKE-GCLELGDEIISVNGQRLRGLTMTQAKSIIS  464 (671)
Q Consensus       386 ~~~~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~ra-G~L~~GD~IlaVNG~~V~~~s~~~av~~L~  464 (671)
                      .+.+.|.|.+. .+++|||+|.++.+..    .+++|..|.++|||+++ | |++||+|++|||+.+.+++|.++..+++
T Consensus         6 ~~~~~v~l~~~-~~~~lG~~i~~~~~~~----~~~~V~~v~~~spA~~agg-l~~GD~I~~vng~~v~~~~~~~~~~~~~   79 (200)
T 2qt5_A            6 KGSTVVELMKK-EGTTLGLTVSGGIDKD----GKPRVSNLRQGGIAARSDQ-LDVGDYIKAVNGINLAKFRHDEIISLLK   79 (200)
T ss_dssp             EEEEEEEEECC-TTCCCCEEEECCTTSS----SCSEEEEECTTSHHHHTTS-CCTTCEEEEETTEECTTSCHHHHHHHHH
T ss_pred             CCCEEEEEEeC-CCCCCCEEEecccCCC----CCeEEEEECCCChHHhcCC-CCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            35678888875 4799999999876543    67999999999999999 6 9999999999999999999999999998


Q ss_pred             cCCCeEEEEEEeCCcccccccccccccccccccccccccccccCCcccCCcccchhhhhhhccccccccchhhhhhcccc
Q psy1156         465 SGPLNMDLLISRTSLKKSNAENEYNESHSREKKSKETRFSLDKQNDFESSNEQDKNNQKRLFQKNCHSINNKLLRKAIIS  544 (671)
Q Consensus       465 ~~g~~V~L~V~R~~~~~~~a~~~~~~~~s~~~~~~~~~ss~d~e~~~~ssp~~~k~s~~~~~q~~~~s~~~~~~r~~v~s  544 (671)
                      ..+..|.|+|.|.......                      +           .                          
T Consensus        80 ~~g~~v~l~v~R~~~~~~~----------------------~-----------g--------------------------  100 (200)
T 2qt5_A           80 NVGERVVLEVEYELPPVSI----------------------Q-----------G--------------------------  100 (200)
T ss_dssp             TCCSEEEEEEEEECCCCCC----------------------C-----------C--------------------------
T ss_pred             hCCCeEEEEEeccCCCccc----------------------C-----------C--------------------------
Confidence            8889999999885421000                      0           0                          


Q ss_pred             cCCCCCchhhhhhccCCccCCCCCCCCcccceeeEEEeeCCCCCcccEEEecCCCCCC-CCcceeEEEeCCCCHHhHhCC
Q psy1156         545 TGSISGDEEETILTSTNFCTLPRRPRSAICTFHTIVFEKGPGKKGLGFTIVGGKDSPR-GAIGIFIKSILDNGQAAEDGR  623 (671)
Q Consensus       545 ~~s~s~d~~~s~~~s~~~~~lP~~p~s~~~~~~~V~L~K~~g~~~LGfsL~Gg~ds~~-g~~GVfIssV~pgSpAaraGr  623 (671)
                            .                   ........|.+.+..  ..|||.+.++..... ...|++|..|.++|+|+++|+
T Consensus       101 ------~-------------------~~~~~~~~v~l~~~~--~~lG~~l~~g~~~~~~~~~g~~V~~v~~~s~A~~aG~  153 (200)
T 2qt5_A          101 ------S-------------------SVMFRTVEVTLHKEG--NTFGFVIRGGAHDDRNKSRPVVITCVRPGGPADREGT  153 (200)
T ss_dssp             ------S-------------------SEEEEEEEEEEECBT--TBCSEEEEEECCSSTTTCEEEEEEEECTTSHHHHHCC
T ss_pred             ------C-------------------ccceeEEEEEEecCC--CCeEEEEECCCCCCccCCCCEEEEEECCCChHHHcCC
Confidence                  0                   000012245555443  789999987654211 135899999999999999999


Q ss_pred             CCCCCEEEEECCeecCCCCHHHHHHHHHhcCCCcEEEEEEeCCCCCC
Q psy1156         624 LKEGDEILAINGQVCHDLTHLEAISLFKTIKNGSISLHICRRLKSKK  670 (671)
Q Consensus       624 Lr~GDrILeVNG~sV~~lSheEAV~lLK~sg~~~VtL~V~Rr~~~~~  670 (671)
                      |++||+|++|||++|.++++.+++.+|+.. ...|.|+|.|+.+..+
T Consensus       154 l~~GD~I~~ing~~v~~~~~~~~~~~l~~~-~~~v~l~v~R~~~~~~  199 (200)
T 2qt5_A          154 IKPGDRLLSVDGIRLLGTTHAEAMSILKQC-GQEATLLIEYDVSVMD  199 (200)
T ss_dssp             CCTTCEEEEETTEECTTCCHHHHHHHHHTT-CSEEEEEEEEEEEC--
T ss_pred             CCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCeEEEEEEECCccCC
Confidence            999999999999999999999999999984 4789999999876543

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}

Probab=99.88  E-value=2e-21  Score=225.86  Aligned_cols=186  Identities=28%  Similarity=0.477  Sum_probs=154.0

Q ss_pred             CCCeEEEEEEeCCCCCcccEEEeeecCCCC-CCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHH
Q psy1156         385 QEGQTMVRVNRRDFNEELGIYIAKIKNSSE-GNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSII  463 (671)
Q Consensus       385 ~~~~~~V~L~k~~~~~~LGfsI~gg~~~~~-g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L  463 (671)
                      ....+.|.|.+..  ++|||+|.||.+... +...|++|..|.+||||+++|+|++||+|++|||+.|.+++|.+++.+|
T Consensus        57 ~~~~~~v~l~k~~--~glGf~i~gg~~~~~~~~~~g~~V~~v~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l  134 (721)
T 2xkx_A           57 EMEYEEITLERGN--SGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEAL  134 (721)
T ss_pred             CceEEEEEEEeCC--CCCCEEEeCCcCCcccCCCCCeEEEEeCCCCHHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHh
Confidence            4566889998865  799999999876532 1127899999999999999999999999999999999999999999999


Q ss_pred             hcCCCeEEEEEEeCCcccccccccccccccccccccccccccccCCcccCCcccchhhhhhhccccccccchhhhhhccc
Q psy1156         464 SSGPLNMDLLISRTSLKKSNAENEYNESHSREKKSKETRFSLDKQNDFESSNEQDKNNQKRLFQKNCHSINNKLLRKAII  543 (671)
Q Consensus       464 ~~~g~~V~L~V~R~~~~~~~a~~~~~~~~s~~~~~~~~~ss~d~e~~~~ssp~~~k~s~~~~~q~~~~s~~~~~~r~~v~  543 (671)
                      +.++..|.|+|.|.+....                                                             
T Consensus       135 ~~~g~~v~l~v~R~~~~~~-------------------------------------------------------------  153 (721)
T 2xkx_A          135 KEAGSIVRLYVMRRKPPAE-------------------------------------------------------------  153 (721)
T ss_pred             hccccccceEEEecccccc-------------------------------------------------------------
Confidence            9888899999987542000                                                             


Q ss_pred             ccCCCCCchhhhhhccCCccCCCCCCCCcccceeeEEEeeCCCCCcccEEEecCCCCC--CCCcceeEEEeCCCCHHhHh
Q psy1156         544 STGSISGDEEETILTSTNFCTLPRRPRSAICTFHTIVFEKGPGKKGLGFTIVGGKDSP--RGAIGIFIKSILDNGQAAED  621 (671)
Q Consensus       544 s~~s~s~d~~~s~~~s~~~~~lP~~p~s~~~~~~~V~L~K~~g~~~LGfsL~Gg~ds~--~g~~GVfIssV~pgSpAara  621 (671)
                                                     ....|+|.+..  .+|||++.++.+..  .+..|++|..|.++|+|+++
T Consensus       154 -------------------------------~~~~v~l~k~~--~~lG~~i~~~~~~~~~~~~~gv~V~~V~~gs~A~~a  200 (721)
T 2xkx_A          154 -------------------------------KVMEIKLIKGP--KGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKD  200 (721)
T ss_pred             -------------------------------cceeeeeeeec--CCCceeeccCCCccccCCCCceEEEEeCCCCchhhc
Confidence                                           01245555543  67999998875432  23469999999999999999


Q ss_pred             CCCCCCCEEEEECCeecCCCCHHHHHHHHHhcCCCcEEEEEEeCCC
Q psy1156         622 GRLKEGDEILAINGQVCHDLTHLEAISLFKTIKNGSISLHICRRLK  667 (671)
Q Consensus       622 GrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg~~~VtL~V~Rr~~  667 (671)
                      |+|++||+|++|||++|.+++|.+++.+|+..+ ..|.|+|.|+..
T Consensus       201 G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~-~~v~l~V~R~g~  245 (721)
T 2xkx_A          201 GRLQIGDKILAVNSVGLEDVMHEDAVAALKNTY-DVVYLKVAKPSN  245 (721)
T ss_pred             CCCCCCCEEEEECCeeCCCCCHHHHHHHHHcCC-CeEEEEEEeCCc
Confidence            999999999999999999999999999998875 789999998765

>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A

Probab=99.88  E-value=4.2e-21  Score=188.35  Aligned_cols=189  Identities=19%  Similarity=0.231  Sum_probs=148.3

Q ss_pred             CCeEEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhc
Q psy1156         386 EGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISS  465 (671)
Q Consensus       386 ~~~~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~  465 (671)
                      .+.+.|.|.+. ...+|||.+.++.+.......+++|..|.++|||+++|.|++||+|++|||+.+.++++.++..+|+.
T Consensus         5 ~~~~~v~l~~~-~~~glG~~i~~~~~~~~~~~~~~~V~~v~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~   83 (196)
T 1p1d_A            5 TETTEVVLTAD-PVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRD   83 (196)
T ss_dssp             CEEEEEEEECB-TTTBCCCEEEECSSCSSSCSCSEEEEECCTTSHHHHTSCCCSSCCEEEETTBCSTTSCHHHHHHHHHT
T ss_pred             cEEEEEEEEeC-CCCccCEEEeCCcCCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Confidence            35678888875 46999999999854322112689999999999999999999999999999999999999999999986


Q ss_pred             C--CCeEEEEEEeCCcccccccccccccccccccccccccccccCCcccCCcccchhhhhhhccccccccchhhhhhccc
Q psy1156         466 G--PLNMDLLISRTSLKKSNAENEYNESHSREKKSKETRFSLDKQNDFESSNEQDKNNQKRLFQKNCHSINNKLLRKAII  543 (671)
Q Consensus       466 ~--g~~V~L~V~R~~~~~~~a~~~~~~~~s~~~~~~~~~ss~d~e~~~~ssp~~~k~s~~~~~q~~~~s~~~~~~r~~v~  543 (671)
                      .  +..+.|+|.|.+.....                               |..                          
T Consensus        84 ~~~g~~v~l~v~R~~~~~~~-------------------------------~~~--------------------------  106 (196)
T 1p1d_A           84 SSITSKVTLEIEFDVAESVI-------------------------------PSS--------------------------  106 (196)
T ss_dssp             CCSSSEEEEEEEECSCSCCB-------------------------------CCS--------------------------
T ss_pred             CCCCCeEEEEEEecCCCCCC-------------------------------CCC--------------------------
Confidence            5  67899999986542110                               000                          


Q ss_pred             ccCCCCCchhhhhhccCCccCCCCCCCCcccceeeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCC
Q psy1156         544 STGSISGDEEETILTSTNFCTLPRRPRSAICTFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGR  623 (671)
Q Consensus       544 s~~s~s~d~~~s~~~s~~~~~lP~~p~s~~~~~~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGr  623 (671)
                                                     ....+.+.+. ....|||.+.+..... ...|++|..|.++|+|+++|+
T Consensus       107 -------------------------------~~~~v~l~~~-~~~~lG~~~~~~~~~~-~~~gv~V~~V~~~s~A~~aG~  153 (196)
T 1p1d_A          107 -------------------------------GTFHVKLPKK-HSVELGITISSPSSRK-PGDPLVISDIKKGSVAHRTGT  153 (196)
T ss_dssp             -------------------------------SCEEEEECCC-SSCCCCCEEECSCSSS-TTCCCEEEECCSSSHHHHTSC
T ss_pred             -------------------------------CcEEEEecCC-CCCCcCEEEECCCCCC-CCCCEEEEEECCCCcHHhcCC
Confidence                                           0012333322 1256899988754321 135899999999999999999


Q ss_pred             CCCCCEEEEECCeecCCCCHHHHHHHHHhcCCCcEEEEEEeCC
Q psy1156         624 LKEGDEILAINGQVCHDLTHLEAISLFKTIKNGSISLHICRRL  666 (671)
Q Consensus       624 Lr~GDrILeVNG~sV~~lSheEAV~lLK~sg~~~VtL~V~Rr~  666 (671)
                      |++||+|++|||+++.++++.+++++|+.. ...|.|+|.|+.
T Consensus       154 l~~GD~I~~vng~~v~~~~~~~~~~~l~~~-~~~v~l~v~R~~  195 (196)
T 1p1d_A          154 LELGDKLLAIDNIRLDSCSMEDAVQILQQC-EDLVKLKIRKDE  195 (196)
T ss_dssp             CCTTCEEEEETTEEGGGCCHHHHHHHHHHC-TTCEEEEEECCC
T ss_pred             CCCCCEEEEECCEECCCCCHHHHHHHHHhC-CCEEEEEEEeCC
Confidence            999999999999999988899999999987 588999998864

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}

Probab=99.84  E-value=9.2e-20  Score=211.88  Aligned_cols=237  Identities=26%  Similarity=0.360  Sum_probs=156.0

Q ss_pred             CeEEEEEEeCCCCCcccEEEeeecCCC--CCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHh
Q psy1156         387 GQTMVRVNRRDFNEELGIYIAKIKNSS--EGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIIS  464 (671)
Q Consensus       387 ~~~~V~L~k~~~~~~LGfsI~gg~~~~--~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~  464 (671)
                      ..+.|+|.+.  ..+|||++.++....  .+. .|++|..|.+||||+++|+|++||+|++|||+.|.++++.+++.+++
T Consensus       154 ~~~~v~l~k~--~~~lG~~i~~~~~~~~~~~~-~gv~V~~V~~gs~A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~  230 (721)
T 2xkx_A          154 KVMEIKLIKG--PKGLGFSIAGGVGNQHIPGD-NSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALK  230 (721)
T ss_pred             cceeeeeeee--cCCCceeeccCCCccccCCC-CceEEEEeCCCCchhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHH
Confidence            4567888764  367999998765321  112 68999999999999999999999999999999999999999999999


Q ss_pred             cCCCeEEEEEEeCCcccccccccccccccccccccccccccccCCcccCCcccchhhhhhhccccccccchhhhhhcccc
Q psy1156         465 SGPLNMDLLISRTSLKKSNAENEYNESHSREKKSKETRFSLDKQNDFESSNEQDKNNQKRLFQKNCHSINNKLLRKAIIS  544 (671)
Q Consensus       465 ~~g~~V~L~V~R~~~~~~~a~~~~~~~~s~~~~~~~~~ss~d~e~~~~ssp~~~k~s~~~~~q~~~~s~~~~~~r~~v~s  544 (671)
                      ..+..|.|+|.|.+.......  ...+..      ....+......  ..+..     ...  ....        .....
T Consensus       231 ~~~~~v~l~V~R~g~~~~~~~--~~~p~~------~~~~s~~~~~~--~~~~~-----~~~--~~~~--------~~~~~  285 (721)
T 2xkx_A          231 NTYDVVYLKVAKPSNAYLSDS--YAPPDI------TTSYSQHLDNE--ISHSS-----YLG--TDYP--------TAMTP  285 (721)
T ss_pred             cCCCeEEEEEEeCCcccccCC--CCCCCc------ccCCCCCcccc--cCCcc-----ccc--cccc--------ccCCC
Confidence            888899999999876432100  000000      00000000000  00000     000  0000        00000


Q ss_pred             cCCCCCchhhhhhccCCccCCCCCCCCcccceeeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCC
Q psy1156         545 TGSISGDEEETILTSTNFCTLPRRPRSAICTFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRL  624 (671)
Q Consensus       545 ~~s~s~d~~~s~~~s~~~~~lP~~p~s~~~~~~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrL  624 (671)
                      ..   ......    .....+.  ........+.|.|.+..  .+|||.|.++.+.    .||+|..|.++|+|+++|+|
T Consensus       286 ~~---~~~~~p----~~~~~~~--~~~~~~~~~~v~l~~~~--~~lG~~i~~~~~~----~gv~V~~V~~gs~A~~aG~L  350 (721)
T 2xkx_A          286 TS---PRRYSP----VAKDLLG--EEDIPREPRRIVIHRGS--TGLGFNIVGGEDG----EGIFISFILAGGPADLSGEL  350 (721)
T ss_pred             CC---CcccCC----ccccccc--ccccccceEEEEEEECC--CCccEEEeccCCC----CCeEEEEeCCCChHHhcCCC
Confidence            00   000000    0000000  00011235678888875  7899999877542    48999999999999999999


Q ss_pred             CCCCEEEEECCeecCCCCHHHHHHHHHhcCCCcEEEEEEeCCC
Q psy1156         625 KEGDEILAINGQVCHDLTHLEAISLFKTIKNGSISLHICRRLK  667 (671)
Q Consensus       625 r~GDrILeVNG~sV~~lSheEAV~lLK~sg~~~VtL~V~Rr~~  667 (671)
                      ++||+|++|||++|.+++|++++.+|+..+ +.|+|+|.|+..
T Consensus       351 ~~GD~Il~VNg~~v~~~~~~e~~~~l~~~~-~~v~L~v~r~~~  392 (721)
T 2xkx_A          351 RKGDQILSVNGVDLRNASHEQAAIALKNAG-QTVTIIAQYKPE  392 (721)
T ss_pred             ccCCEEEEECCEECCCCCHHHHHHHHHhcC-CeEEEEEEeCch
Confidence            999999999999999999999999999874 789999998764

>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A

Probab=99.79  E-value=1.8e-17  Score=158.50  Aligned_cols=159  Identities=23%  Similarity=0.392  Sum_probs=127.2

Q ss_pred             CeEEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhc-
Q psy1156         387 GQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISS-  465 (671)
Q Consensus       387 ~~~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~-  465 (671)
                      +++.|.|.+.. .+.|||.+....       .|++|..|.++|||+++| |++||+|++|||+.+.++++..+..+++. 
T Consensus         4 ~~r~v~l~k~~-~~~lG~~~~~~~-------~g~~V~~v~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~~~~~   74 (166)
T 1w9e_A            4 DPREVILCKDQ-DGKIGLRLKSID-------NGIFVQLVQANSPASLVG-LRFGDQVLQINGENCAGWSSDKAHKVLKQA   74 (166)
T ss_dssp             CCEEEEEECCT-TSCCSEEEEEET-------TEEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHHHC
T ss_pred             CCEEEEEEeCC-CCcEeEEEEeCC-------CCEEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhcC
Confidence            56889998853 579999998743       689999999999999999 99999999999999999988777777764 


Q ss_pred             CCCeEEEEEEeCCcccccccccccccccccccccccccccccCCcccCCcccchhhhhhhccccccccchhhhhhccccc
Q psy1156         466 GPLNMDLLISRTSLKKSNAENEYNESHSREKKSKETRFSLDKQNDFESSNEQDKNNQKRLFQKNCHSINNKLLRKAIIST  545 (671)
Q Consensus       466 ~g~~V~L~V~R~~~~~~~a~~~~~~~~s~~~~~~~~~ss~d~e~~~~ssp~~~k~s~~~~~q~~~~s~~~~~~r~~v~s~  545 (671)
                      .+..+.|+|.+.+..                                                                 
T Consensus        75 ~~~~v~l~vr~~~~~-----------------------------------------------------------------   89 (166)
T 1w9e_A           75 FGEKITMTIRDRPFE-----------------------------------------------------------------   89 (166)
T ss_dssp             CSSEEEEEEECCTTC-----------------------------------------------------------------
T ss_pred             CCCEEEEEEEcCCCc-----------------------------------------------------------------
Confidence            455899999332110                                                                 


Q ss_pred             CCCCCchhhhhhccCCccCCCCCCCCcccceeeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCC
Q psy1156         546 GSISGDEEETILTSTNFCTLPRRPRSAICTFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLK  625 (671)
Q Consensus       546 ~s~s~d~~~s~~~s~~~~~lP~~p~s~~~~~~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr  625 (671)
                                                     .++.|.+.. ...|||.+..         | +|..|.++|+|+++| |+
T Consensus        90 -------------------------------~~v~l~~~~-~~~lG~~~~~---------g-~v~~v~~~s~a~~aG-l~  126 (166)
T 1w9e_A           90 -------------------------------RTITMHKDS-TGHVGFIFKN---------G-KITSIVKDSSAARNG-LL  126 (166)
T ss_dssp             -------------------------------EEEEEECCT-TSCCSEEEET---------T-EEEEECTTSHHHHTT-CC
T ss_pred             -------------------------------EEEEEecCC-CCcEeEEEeC---------C-EEEEEccCCHHHHcC-CC
Confidence                                           012222111 2568998871         4 899999999999999 99


Q ss_pred             CCCEEEEECCeecCCCCHHHHHHHHHhcCCCcEEEEEE
Q psy1156         626 EGDEILAINGQVCHDLTHLEAISLFKTIKNGSISLHIC  663 (671)
Q Consensus       626 ~GDrILeVNG~sV~~lSheEAV~lLK~sg~~~VtL~V~  663 (671)
                      +||+|++|||.++.++.+.++...++..+ ..+.|.|.
T Consensus       127 ~GD~I~~ing~~v~~~~~~~v~~~v~r~g-~~~~l~v~  163 (166)
T 1w9e_A          127 TEHNICEINGQNVIGLKDSQIADILSTSG-TVVTITIM  163 (166)
T ss_dssp             SSEEEEEETTEECTTCCHHHHHHHHHHSC-SEEEEEEE
T ss_pred             CCCEEEEECCEECCCCChHHHHHHHhhCC-CEEEEEEE
Confidence            99999999999999999999988888764 67777764

>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A

Probab=99.79  E-value=4.5e-20  Score=200.16  Aligned_cols=170  Identities=25%  Similarity=0.427  Sum_probs=75.1

Q ss_pred             CCCeEEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHh
Q psy1156         385 QEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIIS  464 (671)
Q Consensus       385 ~~~~~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~  464 (671)
                      ....+.|.|.+. .+++|||.|.+... .. ...|++|..|.+||||+++|+|++||+|++|||+++.++++.+++.+++
T Consensus       202 ~~~~~~V~i~k~-~ge~lG~~i~~~~~-g~-~~~g~~V~~V~~gspA~~aG~L~~GD~Il~VnG~~v~~~~~~~~~~~l~  278 (388)
T 3suz_A          202 SENCKELQLEKH-KGEILGVVVVESGW-GS-ILPTVILANMMNGGPAARSGKLSIGDQIMSINGTSLVGLPLATCQGIIK  278 (388)
T ss_dssp             SSCCEEEEECCC-SSCCCCCCCBCC----C-CSCCCBCCCCCCSSHHHHTCCCCTTCEEEEETTEECSSCCSTTHHHHTT
T ss_pred             cccceEEEEECC-CCCceeEEEEecCC-CC-cCCCEEEEeeCCCCHHHHcCCCCCCCEEEEECCEEccCCCHHHHHHHHH
Confidence            456789999885 36899999987431 11 1256999999999999999999999999999999999999999999998


Q ss_pred             cC--CCeEEEEEEeCCcccccccccccccccccccccccccccccCCcccCCcccchhhhhhhccccccccchhhhhhcc
Q psy1156         465 SG--PLNMDLLISRTSLKKSNAENEYNESHSREKKSKETRFSLDKQNDFESSNEQDKNNQKRLFQKNCHSINNKLLRKAI  542 (671)
Q Consensus       465 ~~--g~~V~L~V~R~~~~~~~a~~~~~~~~s~~~~~~~~~ss~d~e~~~~ssp~~~k~s~~~~~q~~~~s~~~~~~r~~v  542 (671)
                      ..  +..+.|+|.|.+....                                                            
T Consensus       279 ~~~~~~~v~l~v~r~~~~~~------------------------------------------------------------  298 (388)
T 3suz_A          279 GLKNQTQVKLNIVSCPPVTT------------------------------------------------------------  298 (388)
T ss_dssp             TCTTCSCEEEEEEECCSCC-------------------------------------------------------------
T ss_pred             hccCCCccccccccccccce------------------------------------------------------------
Confidence            64  4569999987532100                                                            


Q ss_pred             cccCCCCCchhhhhhccCCccCCCCCCCCcccceeeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhC
Q psy1156         543 ISTGSISGDEEETILTSTNFCTLPRRPRSAICTFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDG  622 (671)
Q Consensus       543 ~s~~s~s~d~~~s~~~s~~~~~lP~~p~s~~~~~~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraG  622 (671)
                                                          +.+........|||.+.++          +|..|.++|+|+++|
T Consensus       299 ------------------------------------v~l~~~~~~~~lG~~i~~g----------~I~~V~~gs~A~~aG  332 (388)
T 3suz_A          299 ------------------------------------VLIKRPDLKYQLGFSVQNG----------IICSLMRGGIAERGG  332 (388)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ------------------------------------eeEeecCCCCccceEEecC----------EEEEeecCCHHHHcC
Confidence                                                0010001124688887642          899999999999999


Q ss_pred             CCCCCCEEEEECCeecCCCCHHHHHHHHHhcCCCcEEEEEEeC
Q psy1156         623 RLKEGDEILAINGQVCHDLTHLEAISLFKTIKNGSISLHICRR  665 (671)
Q Consensus       623 rLr~GDrILeVNG~sV~~lSheEAV~lLK~sg~~~VtL~V~Rr  665 (671)
                       |++||+|++|||++|.+++|++++.+|+..+ +.|.|+|.+.
T Consensus       333 -L~~GD~Il~VNg~~v~~~s~~~~~~~l~~~~-~~v~L~V~p~  373 (388)
T 3suz_A          333 -VRVGHRIIEINGQSVVATAHEKIVQALSNSV-GEIHMKTMPA  373 (388)
T ss_dssp             -------------------------------------------
T ss_pred             -CCCCCEEEEECCEECCCCCHHHHHHHHHhCC-CeEEEEEEec
Confidence             9999999999999999999999999999875 7888888554

>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane protein; 1.65A {Homo sapiens} PDB: 4edj_A

Probab=99.71  E-value=1e-16  Score=159.56  Aligned_cols=153  Identities=20%  Similarity=0.189  Sum_probs=109.8

Q ss_pred             CcEEEEEEcCCChhhhcCCCCCC-CEEEccCCeeccCCCHHHHHHHHhcCCCeEEEEEEeCCcccccccccccccccccc
Q psy1156         418 GGFVVAHIVSGGLAEKEGCLELG-DEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISRTSLKKSNAENEYNESHSREK  496 (671)
Q Consensus       418 ~GI~Vs~V~pGspA~raG~L~~G-D~IlaVNG~~V~~~s~~~av~~L~~~g~~V~L~V~R~~~~~~~a~~~~~~~~s~~~  496 (671)
                      .|++|..|.++|||+++| |++| |+|++|||+.+..+.......+....+..+.|+|.|.+........          
T Consensus        16 ~G~~V~~V~~~SpA~~AG-L~~G~D~I~~ing~~v~~~~~~~~~~~~~~~g~~v~l~v~R~~~~~~~~v~----------   84 (209)
T 3rle_A           16 EGYHVLRVQENSPGHRAG-LEPFFDFIVSINGSRLNKDNDTLKDLLKANVEKPVKMLIYSSKTLELRETS----------   84 (209)
T ss_dssp             EEEEEEEECTTSHHHHTT-CCTTTEEEEEETTEECCSSSSHHHHHHHHTTTSCEEEEEEETTTCCEEEEE----------
T ss_pred             CEEEEEEECCCCHHHHCC-CCcCCeEEEEECCEECcCHHHHHHHHHhcCCCCEEEEEEEecCCceEEEEE----------
Confidence            789999999999999999 9999 9999999999998766544333335678999999986532111000          


Q ss_pred             cccccccccccCCcccCCcccchhhhhhhccccccccchhhhhhcccccCCCCCchhhhhhccCCccCCCCCCCCcccce
Q psy1156         497 KSKETRFSLDKQNDFESSNEQDKNNQKRLFQKNCHSINNKLLRKAIISTGSISGDEEETILTSTNFCTLPRRPRSAICTF  576 (671)
Q Consensus       497 ~~~~~~ss~d~e~~~~ssp~~~k~s~~~~~q~~~~s~~~~~~r~~v~s~~s~s~d~~~s~~~s~~~~~lP~~p~s~~~~~  576 (671)
                         +                                          .                      |...       
T Consensus        85 ---l------------------------------------------~----------------------p~~~-------   90 (209)
T 3rle_A           85 ---V------------------------------------------T----------------------PSNL-------   90 (209)
T ss_dssp             ---E------------------------------------------C----------------------CCSS-------
T ss_pred             ---E------------------------------------------c----------------------cccc-------
Confidence               0                                          0                      0000       


Q ss_pred             eeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCC-CCEEEEECCeecCCCCHHHHHHHHHhcCC
Q psy1156         577 HTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKE-GDEILAINGQVCHDLTHLEAISLFKTIKN  655 (671)
Q Consensus       577 ~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~-GDrILeVNG~sV~~lSheEAV~lLK~sg~  655 (671)
                           ..  ....||+.+...........|++|..|.++|||+++| |++ ||+|++|||. +.  ++.++..+|+..+.
T Consensus        91 -----~~--~~~~lGi~~~~~~~~~~~~~Gv~V~~V~~~spA~~aG-l~~~GD~I~~ing~-v~--~~~~l~~~l~~~~g  159 (209)
T 3rle_A           91 -----WG--GQGLLGVSIRFCSFDGANENVWHVLEVESNSPAALAG-LRPHSDYIIGADTV-MN--ESEDLFSLIETHEA  159 (209)
T ss_dssp             -----SS--SSSSSCEEEEEEECTTGGGSCEEEEEECTTSHHHHHT-CCTTTEEEEEESSC-CC--SSSCHHHHHHHTTT
T ss_pred             -----cc--ccCccceEEeecChhHccccceEEEEeCCCChHHHCC-CCCCCCEEEECCCE-eC--CHHHHHHHHHhCCC
Confidence                 00  0145777776322211112589999999999999999 999 9999999998 75  55677777777655


Q ss_pred             CcEEEEEEeCC
Q psy1156         656 GSISLHICRRL  666 (671)
Q Consensus       656 ~~VtL~V~Rr~  666 (671)
                      ..|.|+|.|+.
T Consensus       160 ~~v~l~v~r~~  170 (209)
T 3rle_A          160 KPLKLYVYNTD  170 (209)
T ss_dssp             SCEEEEEEETT
T ss_pred             CeEEEEEEECC
Confidence            78999998865

>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A

Probab=99.68  E-value=2.5e-16  Score=173.17  Aligned_cols=192  Identities=18%  Similarity=0.223  Sum_probs=126.4

Q ss_pred             ccchhccccCCCCCCCCeEEEEEEeCC--CCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCC
Q psy1156         371 MEISELSSENSEDSQEGQTMVRVNRRD--FNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNG  448 (671)
Q Consensus       371 ~~~v~~~~~~~~~~~~~~~~V~L~k~~--~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG  448 (671)
                      .+....++...+...+++..|.+..-.  ....||+...          .|++|..|.++|||+++| |++||+|++|||
T Consensus       224 ~~~~~~~l~~~g~v~r~~lGv~~~~~~~~~a~~~gl~~~----------~G~~V~~V~~~spA~~aG-L~~GD~I~~vnG  292 (436)
T 4a8c_A          224 ARTLAQQLIDFGEIKRGLLGIKGTEMSADIAKAFNLDVQ----------RGAFVSEVLPGSGSAKAG-VKAGDIITSLNG  292 (436)
T ss_pred             HHHHHHHHHhccccccccCceEecccCHHHHHHhCCCCC----------cceEEEEECCCChHHHCC-CCCCCEEEEECC
Confidence            344444455555566667777665421  1233444221          689999999999999999 999999999999


Q ss_pred             eeccCCCHHHHHHHHh--cCCCeEEEEEEeCCcccccccccccccccccccccccccccccCCcccCCcccchhhhhhhc
Q psy1156         449 QRLRGLTMTQAKSIIS--SGPLNMDLLISRTSLKKSNAENEYNESHSREKKSKETRFSLDKQNDFESSNEQDKNNQKRLF  526 (671)
Q Consensus       449 ~~V~~~s~~~av~~L~--~~g~~V~L~V~R~~~~~~~a~~~~~~~~s~~~~~~~~~ss~d~e~~~~ssp~~~k~s~~~~~  526 (671)
                      +.|.++.  ++...+.  ..+..+.|+|.|++........             +...           +...        
T Consensus       293 ~~v~~~~--~l~~~l~~~~~g~~v~l~v~R~g~~~~~~v~-------------l~~~-----------~~~~--------  338 (436)
T 4a8c_A          293 KPLNSFA--ELRSRIATTEPGTKVKLGLLRNGKPLEVEVT-------------LDTS-----------TSSS--------  338 (436)
T ss_pred             EECCCHH--HHHHHHHhcCCCCEEEEEEEECCEEEEEEEE-------------ECCC-----------Cccc--------
Confidence            9998764  4444443  4578999999998763222000             0000           0000        


Q ss_pred             cccccccchhhhhhcccccCCCCCchhhhhhccCCccCCCCCCCCcccceeeEEEeeCCCCCcccEEEecCCCC--CCCC
Q psy1156         527 QKNCHSINNKLLRKAIISTGSISGDEEETILTSTNFCTLPRRPRSAICTFHTIVFEKGPGKKGLGFTIVGGKDS--PRGA  604 (671)
Q Consensus       527 q~~~~s~~~~~~r~~v~s~~s~s~d~~~s~~~s~~~~~lP~~p~s~~~~~~~V~L~K~~g~~~LGfsL~Gg~ds--~~g~  604 (671)
                                              .                ..              .  ...+|+........  ....
T Consensus       339 ------------------------~----------------~~--------------~--~~~~gl~~~~~~~~~~~~~~  362 (436)
T 4a8c_A          339 ------------------------A----------------SA--------------E--MITPALEGATLSDGQLKDGG  362 (436)
T ss_pred             ------------------------c----------------cc--------------c--ccccCceeeecccccccCCC
Confidence                                    0                00              0  00122222111100  0112


Q ss_pred             cceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcCCCcEEEEEEeCCC
Q psy1156         605 IGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKNGSISLHICRRLK  667 (671)
Q Consensus       605 ~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg~~~VtL~V~Rr~~  667 (671)
                      .|++|..|.++|||+++| |++||+|++|||++|.  ++.+++++|+..+ +.|.|+|.|+..
T Consensus       363 ~gv~V~~V~~~spA~~aG-L~~GD~I~~vng~~v~--~~~~~~~~l~~~~-~~v~l~v~R~g~  421 (436)
T 4a8c_A          363 KGIKIDEVVKGSPAAQAG-LQKDDVIIGVNRDRVN--SIAEMRKVLAAKP-AIIALQIVRGNE  421 (436)
T ss_pred             CCEEEEEeCCCCHHHHcC-CCCCCEEEEECCEECC--CHHHHHHHHHhCC-CeEEEEEEECCE
Confidence            489999999999999999 9999999999999998  7899999999864 689999998754

>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A

Probab=99.58  E-value=1.7e-15  Score=167.27  Aligned_cols=198  Identities=16%  Similarity=0.195  Sum_probs=126.3

Q ss_pred             ccchhccccCCCCCCCCeEEEEEEeCC--CCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCC
Q psy1156         371 MEISELSSENSEDSQEGQTMVRVNRRD--FNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNG  448 (671)
Q Consensus       371 ~~~v~~~~~~~~~~~~~~~~V~L~k~~--~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG  448 (671)
                      .+....++...+...++|..|.++.-.  ....||+..        . ..|++|..|.++|||+++| |++||+|++|||
T Consensus       242 ~~~~~~~l~~~g~v~r~~lGv~~~~~~~~~a~~~gl~~--------~-~~G~~V~~V~~~spA~~aG-L~~GDvI~~vnG  311 (451)
T 3pv2_A          242 VKDVAQQIIKFGSIHRGLMGIFVQHLTPELAQAMGYPE--------D-FQGALVSQVNPNSPAELAG-LKAGDIITQIND  311 (451)
T ss_dssp             HHHHHHHHHHHSSCCCCBCCEEEEECCHHHHHHTTSCT--------T-CCCEEEEEECTTSHHHHHT-CCTTCEEEEETT
T ss_pred             HHHHHHHHHhcCCcccccccceEEeccHHHHHhcCCCc--------C-CceEEEEecCCCChHHHcC-CCCCCEEEEECC
Confidence            344444455555666777777765422  112334310        0 0589999999999999999 999999999999


Q ss_pred             eeccCCCHHHHHHHHh--cCCCeEEEEEEeCCcccccccccccccccccccccccccccccCCcccCCcccchhhhhhhc
Q psy1156         449 QRLRGLTMTQAKSIIS--SGPLNMDLLISRTSLKKSNAENEYNESHSREKKSKETRFSLDKQNDFESSNEQDKNNQKRLF  526 (671)
Q Consensus       449 ~~V~~~s~~~av~~L~--~~g~~V~L~V~R~~~~~~~a~~~~~~~~s~~~~~~~~~ss~d~e~~~~ssp~~~k~s~~~~~  526 (671)
                      +.|.++  .++...+.  ..+..+.|+|.|++........             ..             ....    .   
T Consensus       312 ~~v~~~--~~l~~~l~~~~~g~~v~l~V~R~g~~~~~~v~-------------l~-------------~~~~----~---  356 (451)
T 3pv2_A          312 TKITQA--TQVKTTISLLRVGSTVKIIVERDNKPLTLSAV-------------VT-------------DIKS----H---  356 (451)
T ss_dssp             EECCSH--HHHHHHHHTSCTTCEEEEEEEETTEEEEEEEE-------------CB-------------CHHH----H---
T ss_pred             EEcCCH--HHHHHHHHhcCCCCEEEEEEEECCEEEEEEEE-------------Ec-------------cCCc----c---
Confidence            999865  44445554  4678999999998764322000             00             0000    0   


Q ss_pred             cccccccchhhhhhcccccCCCCCchhhhhhccCCccCCCCCCCCcccceeeEEEeeCCCCCcccEEEecCCC-CCCCCc
Q psy1156         527 QKNCHSINNKLLRKAIISTGSISGDEEETILTSTNFCTLPRRPRSAICTFHTIVFEKGPGKKGLGFTIVGGKD-SPRGAI  605 (671)
Q Consensus       527 q~~~~s~~~~~~r~~v~s~~s~s~d~~~s~~~s~~~~~lP~~p~s~~~~~~~V~L~K~~g~~~LGfsL~Gg~d-s~~g~~  605 (671)
                                  ...            ....                          .....+++|....... ......
T Consensus       357 ------------~~~------------~~~~--------------------------~~~~~G~~l~~~~~~~~~~~~~~  386 (451)
T 3pv2_A          357 ------------EQK------------LQSN--------------------------NPFLYGLALRAFEQESPPHGNVI  386 (451)
T ss_dssp             ------------HHH------------HHHH--------------------------STTTTTEEEEEEEEECTTSCEEE
T ss_pred             ------------ccc------------cccc--------------------------cccccccccccCChhHhcccCCC
Confidence                        000            0000                          0000112222111000 001124


Q ss_pred             ceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcCCCcEEEEEEeCCC
Q psy1156         606 GIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKNGSISLHICRRLK  667 (671)
Q Consensus       606 GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg~~~VtL~V~Rr~~  667 (671)
                      |++|..|.++|+|+++| |++||+|++|||++|.  +.+++.++|+.. ...+.|+|.|+..
T Consensus       387 Gv~V~~V~~gspA~~aG-L~~GD~I~~Vng~~v~--~~~~~~~~l~~~-~~~v~l~v~R~g~  444 (451)
T 3pv2_A          387 GVQVVGASENSAGWRAG-IRPGDIIISANKKPVT--DVKSLQTIAQEK-KKELLVQVLRGPG  444 (451)
T ss_dssp             EEEEEEECTTSHHHHHT-CCTTCEEEEETTEECC--SHHHHHHHTTSS-CSCEEEEEEETTE
T ss_pred             ceEEEEECCCCHHHHcC-CCCCCEEEEECCEECC--CHHHHHHHHhcC-CCeEEEEEEECCE
Confidence            89999999999999999 9999999999999998  679999999885 4789999998753

>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor, PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2

Probab=99.55  E-value=2.3e-14  Score=132.37  Aligned_cols=93  Identities=31%  Similarity=0.550  Sum_probs=80.9

Q ss_pred             cceeeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhc
Q psy1156         574 CTFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTI  653 (671)
Q Consensus       574 ~~~~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~s  653 (671)
                      ...+.|.|.+..  .+|||.|.++.+.+.+..|+||..|.++|+|+++|+|++||+|++|||++|.+++|.+++.+|+..
T Consensus        28 ~~~~~v~l~k~~--~glG~~i~gg~~~~~~~~~i~I~~V~~gs~A~~aggL~~GD~Il~Vng~~v~~~~~~~~~~~l~~~  105 (130)
T 1i16_A           28 ATVCTVTLEKMS--AGLGFSLEGGKGSLHGDKPLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKAL  105 (130)
T ss_dssp             EEEEEEEEETTS--SSTTEEEECCCCCSSSCCCCEEEEECSSCCCSSSCCCCTTCCEEECSSCBGGGSCHHHHHHHHHTS
T ss_pred             CcEEEEEEEcCC--CccCEEEecCcCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence            466788998875  799999999887554456899999999999999955999999999999999999999999999998


Q ss_pred             CCCcEEEEEEeCCCC
Q psy1156         654 KNGSISLHICRRLKS  668 (671)
Q Consensus       654 g~~~VtL~V~Rr~~~  668 (671)
                      +...|.|+|.|+...
T Consensus       106 ~~~~v~l~v~r~~~~  120 (130)
T 1i16_A          106 PDGPVTIVIRRKSLQ  120 (130)
T ss_dssp             CSSEEEEEEEEESSC
T ss_pred             CCceEEEEEEeCCCC
Confidence            655699999887543

>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural genomics, structural genomics consortium, SGC, metal-binding; 1.75A {Homo sapiens}

Probab=99.52  E-value=6.6e-14  Score=127.70  Aligned_cols=91  Identities=27%  Similarity=0.474  Sum_probs=80.7

Q ss_pred             ceeeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcC
Q psy1156         575 TFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIK  654 (671)
Q Consensus       575 ~~~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg  654 (671)
                      ..+.|.|.+.. ..+|||+|.++.+...+..|++|..|.++|+|+++|+|++||+|++|||++|.++++.+++.+|+..+
T Consensus        24 ~~~~v~l~k~~-~~~lGf~i~gg~~~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~  102 (118)
T 3b76_A           24 HEKVVNIQKDP-GESLGMTVAGGASHREWDLPIYVISVEPGGVISRDGRIKTGDILLNVDGVELTEVSRSEAVALLKRTS  102 (118)
T ss_dssp             EEEEEEEECCT-TCCCCEEEEECSCSTTCCCCEEEEEECTTSHHHHHCSSCTTCEEEEETTEEGGGSCHHHHHHHHHSCC
T ss_pred             CcEEEEEEeCC-CCccCEEEecCCCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            45678888775 48999999999876555679999999999999999999999999999999999999999999999885


Q ss_pred             CCcEEEEEEeCCC
Q psy1156         655 NGSISLHICRRLK  667 (671)
Q Consensus       655 ~~~VtL~V~Rr~~  667 (671)
                       +.|.|+|.|...
T Consensus       103 -~~v~L~v~R~~~  114 (118)
T 3b76_A          103 -SSIVLKALEVKE  114 (118)
T ss_dssp             -SEEEEEEEEEEE
T ss_pred             -CeEEEEEEECCC
Confidence             789999988653

>3gge_A PDZ domain-containing protein GIPC2; structural genomics, structural genomics consort protein binding; 2.60A {Homo sapiens}

Probab=99.52  E-value=9.3e-14  Score=122.61  Aligned_cols=87  Identities=25%  Similarity=0.282  Sum_probs=76.7

Q ss_pred             ceeeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcC
Q psy1156         575 TFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIK  654 (671)
Q Consensus       575 ~~~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg  654 (671)
                      ..+.|.|.|..  ++|||+|.++..     ..+||++|.++|+|++.|.|++||+|++|||++|.+++|.+++++|++++
T Consensus         5 ~~k~V~l~K~~--~~LG~tI~~~g~-----g~~~I~rI~~gg~a~r~g~L~vGD~I~~VNG~~v~g~~h~evv~lLk~~~   77 (95)
T 3gge_A            5 IEKEVNVYKSE--DSLGLTITDNGV-----GYAFIKRIKDGGVIDSVKTICVGDHIESINGENIVGWRHYDVAKKLKELK   77 (95)
T ss_dssp             EEEEEEEECCS--SCCCEEEECSSS-----SCCEEEEECTTSHHHHCTTCCTTCEEEEETTEECTTCCHHHHHHHHHHSC
T ss_pred             eEEEEEEEECC--CCceEEEEcCCC-----CcEEEEEEcCCChHHhcCCCCCCCEEEEECCEEccCCCHHHHHHHHHhCC
Confidence            45789999976  899999986422     35899999999999999999999999999999999999999999999986


Q ss_pred             C-CcEEEEEEeCCCC
Q psy1156         655 N-GSISLHICRRLKS  668 (671)
Q Consensus       655 ~-~~VtL~V~Rr~~~  668 (671)
                      . .+++|++.+..+.
T Consensus        78 ~g~~~~L~lv~p~~~   92 (95)
T 3gge_A           78 KEELFTMKLIEPKKS   92 (95)
T ss_dssp             TTCEEEEEEEEECSC
T ss_pred             CCCEEEEEEECcccc
Confidence            4 4699999988765

>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=99.50  E-value=9e-14  Score=124.07  Aligned_cols=91  Identities=27%  Similarity=0.462  Sum_probs=79.3

Q ss_pred             ceeeEEEeeCCCCCcccEEEecCCCCCC-CCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhc
Q psy1156         575 TFHTIVFEKGPGKKGLGFTIVGGKDSPR-GAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTI  653 (671)
Q Consensus       575 ~~~~V~L~K~~g~~~LGfsL~Gg~ds~~-g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~s  653 (671)
                      ..+.|.|.|..  .+|||+|.++.+... ...|++|..|.++|||+++|+|++||+|++|||++|.+++|.+++.+|+..
T Consensus        15 ~~~~v~l~k~~--~glG~~i~~~~~~~~~~~~g~~V~~v~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~   92 (108)
T 2d92_A           15 EVKIVELVKDC--KGLGFSILDYQDPLDPTRSVIVIRSLVADGVAERSGGLLPGDRLVSVNEYCLDNTSLAEAVEILKAV   92 (108)
T ss_dssp             SCEEEEEEECS--SCCSEEEEEEECSSCTTCEEEEEEEECTTCHHHHHTCCCTTCEEEEESSCBCTTCCHHHHHHHHHHS
T ss_pred             ceEEEEEEECC--CccCEEEecccccCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence            45689999986  799999998765321 346899999999999999999999999999999999999999999999997


Q ss_pred             CCCcEEEEEEeCCC
Q psy1156         654 KNGSISLHICRRLK  667 (671)
Q Consensus       654 g~~~VtL~V~Rr~~  667 (671)
                      +.+.|.|+|.|...
T Consensus        93 ~~~~v~l~v~R~~~  106 (108)
T 2d92_A           93 PPGLVHLGICSGPS  106 (108)
T ss_dssp             CSEEEEEEEECCCC
T ss_pred             CCCeEEEEEEcCCC
Confidence            55689999988764

>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP: b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A

Probab=99.50  E-value=1.3e-13  Score=118.61  Aligned_cols=78  Identities=27%  Similarity=0.367  Sum_probs=69.1

Q ss_pred             ceeeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcC
Q psy1156         575 TFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIK  654 (671)
Q Consensus       575 ~~~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg  654 (671)
                      ..+.|+|.|.+ .++|||++.++          +|.+|.++|||+++| |++||+|++|||++|.+++|++++++|++.+
T Consensus         4 ~~r~v~l~k~~-~g~~Gf~i~~g----------~I~~v~~gspA~~aG-l~~GD~Il~VNG~~v~~~~~~evv~llr~~g   71 (82)
T 1r6j_A            4 DPRTITMHKDS-TGHVGFIFKNG----------KITSIVKDSSAARNG-LLTEHNICEINGQNVIGLKDSQIADILSTSG   71 (82)
T ss_dssp             CCEEEEEECCT-TSCCCEEEETT----------EEEEECTTSHHHHHT-CCSSEEEEEETTEECTTCCHHHHHHHHHHSC
T ss_pred             ceEEEEEEECC-CCCeEEEEECC----------EEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHHhcCC
Confidence            35789999986 36799999864          588999999999999 9999999999999999999999999999764


Q ss_pred             CCcEEEEEEeC
Q psy1156         655 NGSISLHICRR  665 (671)
Q Consensus       655 ~~~VtL~V~Rr  665 (671)
                       ..|+|+|...
T Consensus        72 -~~V~L~v~p~   81 (82)
T 1r6j_A           72 -TVVTITIMPA   81 (82)
T ss_dssp             -SEEEEEEEEC
T ss_pred             -CEEEEEEEeC
Confidence             7899999753

>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.7A {Homo sapiens} PDB: 2iwp_A

Probab=99.50  E-value=5.3e-14  Score=128.45  Aligned_cols=92  Identities=35%  Similarity=0.612  Sum_probs=77.2

Q ss_pred             ceeeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcC
Q psy1156         575 TFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIK  654 (671)
Q Consensus       575 ~~~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg  654 (671)
                      ..+.|.|.|.. ..+|||+|.++.+.+.+..|++|..|.++|||+++|+|++||+|++|||++|.+++|.+++.+|+..+
T Consensus        24 ~~~~v~l~k~~-~~~lGf~i~gg~~~~~~~~~~~V~~V~~~spA~~aggL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~~  102 (120)
T 2iwo_A           24 GLRTVEMKKGP-TDSLGISIAGGVGSPLGDVPIFIAMMHPTGVAAQTQKLRVGDRIVTICGTSTEGMTHTQAVNLLKNAS  102 (120)
T ss_dssp             -CEEEEEEC-----CCCEEEEEEEEETTEEEEEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCBHHHHHHHHHHCC
T ss_pred             CcEEEEEEcCC-CCCCCEEEecccCCCCCCCCEEEEEECCCCHHHHhCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            45789999886 36999999998764444468999999999999999559999999999999999999999999999985


Q ss_pred             CCcEEEEEEeCCCC
Q psy1156         655 NGSISLHICRRLKS  668 (671)
Q Consensus       655 ~~~VtL~V~Rr~~~  668 (671)
                       +.|.|+|.|....
T Consensus       103 -~~v~l~v~r~g~~  115 (120)
T 2iwo_A          103 -GSIEMQVVAGGDV  115 (120)
T ss_dssp             -SEEEEEEECCTTS
T ss_pred             -CeEEEEEEECCcc
Confidence             7899999997654

>2fne_A Multiple PDZ domain protein; structural protein, structural genomics, SGC, structural genomics consortium, unknown function; 1.83A {Homo sapiens} SCOP: b.36.1.1

Probab=99.50  E-value=6.7e-14  Score=127.21  Aligned_cols=90  Identities=44%  Similarity=0.846  Sum_probs=79.8

Q ss_pred             ceeeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcC
Q psy1156         575 TFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIK  654 (671)
Q Consensus       575 ~~~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg  654 (671)
                      ..+.|.|.|..  .+|||+|.++.+.+.+..|++|..|.++|||+++|+|++||+|++|||++|.++++.+++.+|+..+
T Consensus        25 ~~~~v~L~k~~--~glGf~l~~g~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~  102 (117)
T 2fne_A           25 QCKSITLERGP--DGLGFSIVGGYGSPHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRTK  102 (117)
T ss_dssp             EEEEEEECCBT--TBTSEEEEEEEEETTEEEEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHCC
T ss_pred             ccEEEEEEeCC--CcccEEEecccCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            45789999986  7899999998665444468999999999999999999999999999999999999999999999875


Q ss_pred             CCcEEEEEEeCCC
Q psy1156         655 NGSISLHICRRLK  667 (671)
Q Consensus       655 ~~~VtL~V~Rr~~  667 (671)
                       +.|.|+|.|+..
T Consensus       103 -~~v~l~v~R~g~  114 (117)
T 2fne_A          103 -GTVTLMVLSSDE  114 (117)
T ss_dssp             -SSEEEEEEECSC
T ss_pred             -CeEEEEEEeCCc
Confidence             679999999764

>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein, STXBP4 protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.49  E-value=2.3e-13  Score=122.05  Aligned_cols=89  Identities=29%  Similarity=0.516  Sum_probs=78.2

Q ss_pred             ceeeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcC
Q psy1156         575 TFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIK  654 (671)
Q Consensus       575 ~~~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg  654 (671)
                      .++.|.+.+.   .+|||+|.|+.+.... .|++|..|.++|||+++|+|++||+|++|||+++.+++|.+++++|+..+
T Consensus        15 ~~~~v~l~k~---~glG~~i~gg~~~~~~-~~~~V~~v~~~s~A~~aG~l~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~   90 (109)
T 1wi4_A           15 AFRVITVTKE---TGLGLKILGGINRNEG-PLVYIHEVIPGGDCYKDGRLKPGDQLVSINKESMIGVSFEEAKSIITRAK   90 (109)
T ss_dssp             TEEEEEECCS---SCCCEEEEECSSSSSC-SSEEEEEECTTSHHHHHCSCCTTCBEEEETTSCCTTCCHHHHHHHHHHSC
T ss_pred             cEEEEEEeCC---CccCEEEEeccCCCCC-CCEEEEEeCCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHccc
Confidence            5678888775   6899999998765422 37999999999999999999999999999999999999999999999986


Q ss_pred             ---CCcEEEEEEeCCC
Q psy1156         655 ---NGSISLHICRRLK  667 (671)
Q Consensus       655 ---~~~VtL~V~Rr~~  667 (671)
                         ...+.|.|.|...
T Consensus        91 ~r~~~~~~l~v~R~~~  106 (109)
T 1wi4_A           91 LRSESPWEIAFIRSGP  106 (109)
T ss_dssp             CSSSSCEEEEEECCCC
T ss_pred             cCCCceEEEEEEeCCC
Confidence               6789999998764

>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A 1vj6_A 1gm1_A 1ozi_A

Probab=99.49  E-value=3e-13  Score=117.49  Aligned_cols=90  Identities=26%  Similarity=0.516  Sum_probs=79.5

Q ss_pred             ceeeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcC
Q psy1156         575 TFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIK  654 (671)
Q Consensus       575 ~~~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg  654 (671)
                      ..++|.|.+..  .+|||++.++.+......|++|..|.++|||+++|+|++||+|++|||++|.++++.+++.+++..+
T Consensus         5 ~~~~v~l~k~~--~~lG~~i~~g~~~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~g   82 (96)
T 1d5g_A            5 DIFEVELAKND--NSLGISVTGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTG   82 (96)
T ss_dssp             CEEEEEEECSS--SSCCEEEECCSSSCSSSSCCEEEEECTTSHHHHTTCCCTTCEEEEETTEECTTCCHHHHHHHHHSCC
T ss_pred             CEEEEEEEeCC--CCCCEEEECCCCCCCCcCCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            45688998875  8999999998776545569999999999999999999999999999999999999999999999864


Q ss_pred             CCcEEEEEEeCCC
Q psy1156         655 NGSISLHICRRLK  667 (671)
Q Consensus       655 ~~~VtL~V~Rr~~  667 (671)
                       ..|.|+|.|+..
T Consensus        83 -~~v~l~v~R~~~   94 (96)
T 1d5g_A           83 -QVVHLLLEKGQS   94 (96)
T ss_dssp             -SEEEEEEECCSC
T ss_pred             -CeEEEEEEcCCC
Confidence             789999988754

>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.49  E-value=1.9e-13  Score=121.52  Aligned_cols=92  Identities=30%  Similarity=0.574  Sum_probs=80.1

Q ss_pred             ceeeEEEeeCCCCCcccEEEec---CCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHH
Q psy1156         575 TFHTIVFEKGPGKKGLGFTIVG---GKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFK  651 (671)
Q Consensus       575 ~~~~V~L~K~~g~~~LGfsL~G---g~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK  651 (671)
                      ..+.|.|.+..  .+|||.|.+   +.+......|++|..|.++|||+++|+|++||+|++|||++|.++++.+++.+++
T Consensus         9 ~~~~v~l~k~~--~glG~~i~~~~~g~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~   86 (107)
T 1wf8_A            9 ELFPVELEKDE--DGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQNFAATVLR   86 (107)
T ss_dssp             EEEEEEEECBT--TBSCEEEEEEEESCCTTCCEEEEEEEEECTTCHHHHHCSSCTTCBEEEETTEECBSCCHHHHHHHHH
T ss_pred             eEEEEEEEECC--CcccEEEEecCCCCCCCCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHh
Confidence            55678888875  799999998   5554444579999999999999999999999999999999999999999999999


Q ss_pred             hcCCCcEEEEEEeCCCCC
Q psy1156         652 TIKNGSISLHICRRLKSK  669 (671)
Q Consensus       652 ~sg~~~VtL~V~Rr~~~~  669 (671)
                      ..+ ..|.|+|.|+....
T Consensus        87 ~~~-~~v~l~v~R~~~~~  103 (107)
T 1wf8_A           87 NTK-GNVRFVIGREKPSG  103 (107)
T ss_dssp             HCC-SEEEEEEEEECCCS
T ss_pred             cCC-CeEEEEEEeCCCCC
Confidence            874 78999999987543

>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal transduction, structural genom structural genomics consortium, SGC, signaling protein; 1.85A {Homo sapiens} PDB: 2wl7_A 3rl7_B 1rgr_A* 1kef_A 1zok_A 1iu0_A 1iu2_A

Probab=99.49  E-value=2.9e-13  Score=119.03  Aligned_cols=92  Identities=37%  Similarity=0.617  Sum_probs=80.3

Q ss_pred             ceeeEEEeeCCCCCcccEEEecCCCCCC--CCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHh
Q psy1156         575 TFHTIVFEKGPGKKGLGFTIVGGKDSPR--GAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKT  652 (671)
Q Consensus       575 ~~~~V~L~K~~g~~~LGfsL~Gg~ds~~--g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~  652 (671)
                      ..+.|.|.+..  .+|||+|.++.+.+.  +..|++|..|.++|||+++|+|++||+|++|||++|.++++.+++.+++.
T Consensus         4 ~~~~v~l~k~~--~glG~~i~~g~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~   81 (102)
T 2i1n_A            4 KYEEIVLERGN--SGLGFSIAGGIDNPHVPDDPGIFITKIIPGGAAAMDGRLGVNDCVLRVNEVDVSEVVHSRAVEALKE   81 (102)
T ss_dssp             EEEEEEEECBT--TBTSEEEEECTTSCSSTTCCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHH
T ss_pred             eEEEEEEEECC--CcCCEEEEcccCCCCcCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHc
Confidence            45688998875  799999999876532  34699999999999999999999999999999999999999999999998


Q ss_pred             cCCCcEEEEEEeCCCCC
Q psy1156         653 IKNGSISLHICRRLKSK  669 (671)
Q Consensus       653 sg~~~VtL~V~Rr~~~~  669 (671)
                      .+ ..|.|+|.|+....
T Consensus        82 ~g-~~v~l~v~R~~~~~   97 (102)
T 2i1n_A           82 AG-PVVRLVVRRRQPPP   97 (102)
T ss_dssp             SC-SEEEEEEEEECCCC
T ss_pred             CC-CeEEEEEEeCCCCC
Confidence            64 78999999987643

>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural genomics, structural GEN consortium, SGC, structural protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1 PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A

Probab=99.49  E-value=2.6e-13  Score=117.28  Aligned_cols=89  Identities=37%  Similarity=0.649  Sum_probs=78.2

Q ss_pred             ceeeEEEeeCCCCCcccEEEecCCCCC--CCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHh
Q psy1156         575 TFHTIVFEKGPGKKGLGFTIVGGKDSP--RGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKT  652 (671)
Q Consensus       575 ~~~~V~L~K~~g~~~LGfsL~Gg~ds~--~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~  652 (671)
                      ..+.|+|.+..  .+|||+|.++.+.+  .+..|++|..|.++|||+++|+|++||+|++|||++|.++++.+++.+++.
T Consensus         3 ~~~~v~l~k~~--~g~G~~i~gg~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~   80 (94)
T 2fe5_A            3 TIMEVNLLKGP--KGLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKN   80 (94)
T ss_dssp             CEEEEEEECCT--TCSCEEEEECBTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCBHHHHHHHHHT
T ss_pred             EEEEEEEEECC--CCCCEEEEcccCCCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc
Confidence            46789999886  78999999987643  234689999999999999999999999999999999999999999999998


Q ss_pred             cCCCcEEEEEEeCC
Q psy1156         653 IKNGSISLHICRRL  666 (671)
Q Consensus       653 sg~~~VtL~V~Rr~  666 (671)
                      .+ +.|.|+|.|+.
T Consensus        81 ~~-~~v~l~v~R~g   93 (94)
T 2fe5_A           81 TS-DMVYLKVAKPG   93 (94)
T ss_dssp             CC-SEEEEEEECCC
T ss_pred             CC-CeEEEEEEcCC
Confidence            75 68999998864

>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ, structural genomics; NMR {Homo sapiens}

Probab=99.48  E-value=1.2e-13  Score=126.72  Aligned_cols=93  Identities=33%  Similarity=0.534  Sum_probs=81.8

Q ss_pred             ceeeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecC-CCCHHHHHHHHHhc
Q psy1156         575 TFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCH-DLTHLEAISLFKTI  653 (671)
Q Consensus       575 ~~~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~-~lSheEAV~lLK~s  653 (671)
                      ..+.|.|.+.. ..+|||.|.++.+...+..|++|..|.++|||+++|+|++||+|++|||++|. +++|.+++.+|+..
T Consensus        25 ~~~~v~l~k~~-~~~lG~~i~g~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~~l~~~  103 (128)
T 2db5_A           25 QIEYIDIERPS-TGGLGFSVVALRSQNLGKVDIFVKDVQPGSVADRDQRLKENDQILAINHTPLDQNISHQQAIALLQQT  103 (128)
T ss_dssp             EEEEEEEECCS-SSCCCCEEEEEECSSSSCEEEEEECCCTTSHHHHTCCCCSSCBEEEESSCBCSTTSCHHHHHHHHHHC
T ss_pred             ceEEEEEEECC-CCccCEEEecccCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCCHHHHHHHHHcC
Confidence            45688998886 37999999988776555569999999999999999999999999999999997 99999999999986


Q ss_pred             CCCcEEEEEEeCCCCC
Q psy1156         654 KNGSISLHICRRLKSK  669 (671)
Q Consensus       654 g~~~VtL~V~Rr~~~~  669 (671)
                      + ..|.|+|.|+....
T Consensus       104 ~-~~v~l~v~r~~~~~  118 (128)
T 2db5_A          104 T-GSLRLIVAREPVHT  118 (128)
T ss_dssp             C-SEEEEEEEECCCSS
T ss_pred             C-CeEEEEEEcCCCCC
Confidence            4 78999999987543

>2awx_A Synapse associated protein 97; membrane protein, synaptic signaling, trafficking protein; HET: HIS; 1.80A {Rattus norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A

Probab=99.48  E-value=2.7e-13  Score=120.08  Aligned_cols=91  Identities=34%  Similarity=0.628  Sum_probs=79.5

Q ss_pred             ceeeEEEeeCCCCCcccEEEecCCCCC--CCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHh
Q psy1156         575 TFHTIVFEKGPGKKGLGFTIVGGKDSP--RGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKT  652 (671)
Q Consensus       575 ~~~~V~L~K~~g~~~LGfsL~Gg~ds~--~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~  652 (671)
                      ..+.|.|.|..  .+|||+|.++.+.+  .+..|++|..|.++|||+++|+|++||+|++|||++|.++++.+++.+++.
T Consensus         3 ~~~~v~l~k~~--~glG~~i~gg~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~   80 (105)
T 2awx_A            3 KIMEIKLIKGP--KGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVSLEEVTHEEAVTALKN   80 (105)
T ss_dssp             CEEEEEEECBT--TBSSEEEEECBTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCBHHHHHHHHHS
T ss_pred             eEEEEEEEECC--CCCCEEEeCccCCCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHc
Confidence            45688999887  79999999987643  234589999999999999999999999999999999999999999999998


Q ss_pred             cCCCcEEEEEEeCCCC
Q psy1156         653 IKNGSISLHICRRLKS  668 (671)
Q Consensus       653 sg~~~VtL~V~Rr~~~  668 (671)
                      .+ ..|.|+|.|+...
T Consensus        81 ~~-~~v~l~v~R~~~~   95 (105)
T 2awx_A           81 TS-DFVYLKVAKPTSM   95 (105)
T ss_dssp             CC-SEEEEEEECCCC-
T ss_pred             CC-CeEEEEEEcCCCC
Confidence            74 7899999998754

>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane, mitochondria distribution, PDZ, membrane, scaffold, mitochondrion, membrane protein; 1.35A {Homo sapiens} PDB: 2jin_A

Probab=99.48  E-value=3.5e-13  Score=118.24  Aligned_cols=91  Identities=46%  Similarity=0.775  Sum_probs=79.7

Q ss_pred             ceeeEEEeeCCCCCcccEEEecCCCCCC--CCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHh
Q psy1156         575 TFHTIVFEKGPGKKGLGFTIVGGKDSPR--GAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKT  652 (671)
Q Consensus       575 ~~~~V~L~K~~g~~~LGfsL~Gg~ds~~--g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~  652 (671)
                      ..+.|.|.+..  .+|||+|.++.+.+.  ...|++|..|.++|||+++|+|++||+|++|||++|.++++.+++.+++.
T Consensus         7 ~~~~v~l~~~~--~~lG~~l~~g~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~   84 (101)
T 2jik_A            7 TEEEINLTRGP--SGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRN   84 (101)
T ss_dssp             EEEEEEEECCT--TCCCEEEEECTTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHT
T ss_pred             ccEEEEEEeCC--CCCCEEEeccccCCCccCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Confidence            56789999876  899999999876532  24589999999999999999999999999999999999999999999998


Q ss_pred             cCCCcEEEEEEeCCCC
Q psy1156         653 IKNGSISLHICRRLKS  668 (671)
Q Consensus       653 sg~~~VtL~V~Rr~~~  668 (671)
                      .+ ..|.|+|.|+...
T Consensus        85 ~g-~~v~l~v~R~~~~   99 (101)
T 2jik_A           85 AG-YAVSLRVQHRLES   99 (101)
T ss_dssp             CC-SEEEEEEEEESCC
T ss_pred             CC-CeEEEEEEeCCCC
Confidence            74 7899999987653

>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc, LNX2_human, zinc-finger, polymorphism, ring finger protein 1; 1.3A {Homo sapiens}

Probab=99.48  E-value=3.7e-13  Score=116.80  Aligned_cols=89  Identities=31%  Similarity=0.447  Sum_probs=77.9

Q ss_pred             ceeeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcC
Q psy1156         575 TFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIK  654 (671)
Q Consensus       575 ~~~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg  654 (671)
                      ..+.|.|.|.....+|||.+.++.+.    .|++|..|.++|||+++|+|++||+|++|||++|.++++.+++.+++..+
T Consensus         3 ~~~~v~l~k~~~~~~lG~~~~~~~~~----~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~g   78 (95)
T 2vwr_A            3 EILQVALHKRDSGEQLGIKLVRRTDE----PGVFILDLLEGGLAAQDGRLSSNDRVLAINGHDLKYGTPELAAQIIQASG   78 (95)
T ss_dssp             EEEEEEEECSSTTCCCCEEEEECSSS----CSEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHCC
T ss_pred             EEEEEEEEECCCCCcccEEEEeccCC----CCEEEEEeCCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            45689999875457899999887653    48999999999999999999999999999999999999999999998874


Q ss_pred             CCcEEEEEEeCCCC
Q psy1156         655 NGSISLHICRRLKS  668 (671)
Q Consensus       655 ~~~VtL~V~Rr~~~  668 (671)
                       ..|.|+|.|+...
T Consensus        79 -~~v~l~v~R~~~~   91 (95)
T 2vwr_A           79 -ERVNLTIARPGKP   91 (95)
T ss_dssp             -SEEEEEEEEESCS
T ss_pred             -CEEEEEEEcCCcC
Confidence             7899999997653

>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand, cytoplasm, developmental protein, phosphoprotein, WNT signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A 3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A

Probab=99.47  E-value=1.3e-13  Score=123.19  Aligned_cols=91  Identities=31%  Similarity=0.545  Sum_probs=77.8

Q ss_pred             ceeeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhc-
Q psy1156         575 TFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTI-  653 (671)
Q Consensus       575 ~~~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~s-  653 (671)
                      ..++|.|.+.. ..+|||+|.++.+. .+..|++|.+|.++|||+++|+|++||+|++|||++|.+++|.+++.+|+.. 
T Consensus         5 ~~~~v~l~k~~-~~~lG~~i~g~~~~-~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~   82 (108)
T 3cbz_A            5 NIITVTLNMEK-YNFLGISIVGQSNE-RGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRVLRDIV   82 (108)
T ss_dssp             CEEEEEECHHH-HCCCCEEEEEECSS-TTCCEEEEEEECTTSHHHHHCCCCTTCEEEEETTEETTSCCHHHHHHHHHHHH
T ss_pred             eEEEEEEEeCC-CCccCEEEEcCcCC-CCCCCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhcc
Confidence            45678888753 37899999987653 2346899999999999999999999999999999999999999999999987 


Q ss_pred             -CCCcEEEEEEeCCC
Q psy1156         654 -KNGSISLHICRRLK  667 (671)
Q Consensus       654 -g~~~VtL~V~Rr~~  667 (671)
                       +.+.|.|+|.|+..
T Consensus        83 ~~~~~v~l~v~R~~~   97 (108)
T 3cbz_A           83 HKPGPIVLTVAKSGG   97 (108)
T ss_dssp             TSSSCEEEEEECCCC
T ss_pred             cCCCeEEEEEEeCCC
Confidence             33579999999764

>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.47  E-value=4.2e-13  Score=119.67  Aligned_cols=89  Identities=33%  Similarity=0.578  Sum_probs=79.7

Q ss_pred             ceeeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcC
Q psy1156         575 TFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIK  654 (671)
Q Consensus       575 ~~~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg  654 (671)
                      ..+.|.|.+..  .+|||.|.++.+...+..|++|..|.++|||+++|+|++||+|++|||++|.++++.+++.+++..+
T Consensus         8 ~~~~v~l~~~~--~glG~~l~~g~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~~   85 (110)
T 1um1_A            8 YVFTVELERGP--SGLGMGLIDGMHTHLGAPGLYIQTLLPGSPAAADGRLSLGDRILEVNGSSLLGLGYLRAVDLIRHGG   85 (110)
T ss_dssp             CEEEEEEECCT--TCCCEEEEETTTSTTCCSSEEEEEECTTSHHHHHSCCCTTCEEEEESSCBCSSCCHHHHHHHHHTCC
T ss_pred             cEEEEEEEECC--CccCEEEeCCcCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            56788998876  7999999998776555679999999999999999999999999999999999999999999999874


Q ss_pred             CCcEEEEEEeCC
Q psy1156         655 NGSISLHICRRL  666 (671)
Q Consensus       655 ~~~VtL~V~Rr~  666 (671)
                       ..|.|+|.|+.
T Consensus        86 -~~v~l~v~R~~   96 (110)
T 1um1_A           86 -KKMRFLVAKSD   96 (110)
T ss_dssp             -SEEEEEEECCC
T ss_pred             -CeEEEEEEeCC
Confidence             78999999875

>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain, structural genomics, structural genom consortium, SGC, phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1

Probab=99.47  E-value=3.2e-13  Score=122.57  Aligned_cols=90  Identities=37%  Similarity=0.651  Sum_probs=79.1

Q ss_pred             ceeeEEEeeCCCCCcccEEEecCCCCC--CCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHh
Q psy1156         575 TFHTIVFEKGPGKKGLGFTIVGGKDSP--RGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKT  652 (671)
Q Consensus       575 ~~~~V~L~K~~g~~~LGfsL~Gg~ds~--~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~  652 (671)
                      ..+.|.|.++.  .+|||+|.++.+.+  .+..|++|..|.++|||+++|+|++||+|++|||++|.++++.+++.+|+.
T Consensus        24 ~~~~v~l~k~~--~glG~~i~gg~~~~~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~  101 (117)
T 2byg_A           24 TVVEIKLFKGP--KGLGFSIAGGVGNQHIPGDNSIYVTKIIDGGAAQKDGRLQVGDRLLMVNNYSLEEVTHEEAVAILKN  101 (117)
T ss_dssp             EEEEEEEECBT--TBSSEEEEECTTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHT
T ss_pred             ceEEEEEEeCC--CCcCEEEEcccCCCCccCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc
Confidence            56688888875  89999999987643  234689999999999999999999999999999999999999999999998


Q ss_pred             cCCCcEEEEEEeCCC
Q psy1156         653 IKNGSISLHICRRLK  667 (671)
Q Consensus       653 sg~~~VtL~V~Rr~~  667 (671)
                      .+ ..|.|+|.|+.+
T Consensus       102 ~g-~~v~l~v~R~~~  115 (117)
T 2byg_A          102 TS-EVVYLKVGKPTT  115 (117)
T ss_dssp             CC-SEEEEEEEEEEE
T ss_pred             CC-CeEEEEEEeCCc
Confidence            74 789999998753

>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A* 1t2m_A 2ain_A

Probab=99.47  E-value=3.4e-13  Score=119.47  Aligned_cols=90  Identities=28%  Similarity=0.558  Sum_probs=77.6

Q ss_pred             ceeeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcC
Q psy1156         575 TFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIK  654 (671)
Q Consensus       575 ~~~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg  654 (671)
                      ....|+| +..  .+|||+|.++.+......|++|..|.++|||+++|+|++||+|++|||++|.++++.+++.+++..+
T Consensus        11 ~~~~v~l-~~~--~glG~~i~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~~~~~g   87 (106)
T 3axa_A           11 EIITVTL-KKQ--NGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAELMTRTS   87 (106)
T ss_dssp             CEEEEEE-ECS--SSCSEEEEEEECSSCSSEEEEEEEEBTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTCC
T ss_pred             eEEEEEE-CCC--CccCEEEEeecCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            4456777 554  8999999987655445579999999999999999999999999999999999999999999998864


Q ss_pred             CCcEEEEEEeCCCC
Q psy1156         655 NGSISLHICRRLKS  668 (671)
Q Consensus       655 ~~~VtL~V~Rr~~~  668 (671)
                       ..|.|+|.|+...
T Consensus        88 -~~v~l~v~R~~~~  100 (106)
T 3axa_A           88 -SVVTLEVAKQGAI  100 (106)
T ss_dssp             -SEEEEEEECCCSS
T ss_pred             -CeEEEEEEeCCcc
Confidence             7899999997754

>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic domain associated protein, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.47  E-value=5.6e-13  Score=118.46  Aligned_cols=93  Identities=35%  Similarity=0.591  Sum_probs=79.3

Q ss_pred             ceeeEEEeeCCCCCcccEEEecCCCCC-----CCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHH
Q psy1156         575 TFHTIVFEKGPGKKGLGFTIVGGKDSP-----RGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISL  649 (671)
Q Consensus       575 ~~~~V~L~K~~g~~~LGfsL~Gg~ds~-----~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~l  649 (671)
                      ..+.|.|.|..  .+|||+|.++.+..     ....|++|..|.++|||+++|.|++||+|++|||++|.+++|.+++.+
T Consensus         8 ~~~~v~l~k~~--~~lG~~i~g~~~~~~~~~~~~~~gv~V~~V~~~spA~~aggL~~GD~Il~vng~~v~~~~~~~~~~~   85 (107)
T 1uhp_A            8 KSLTLVLHRDS--GSLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRIIEVNGRDLSRATHDQAVEA   85 (107)
T ss_dssp             EEEEEEECCSS--SCCSEEEECCCSCCCCTTSSCSCCCEEEEECSSSHHHHTTCCCSSCEEEEETTEECTTCCHHHHHHH
T ss_pred             EEEEEEEEeCC--CccCEEEEcCCCCcccccccCCCCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHH
Confidence            45678898874  89999999876531     124689999999999999994499999999999999999999999999


Q ss_pred             HHhcCCCcEEEEEEeCCCCCC
Q psy1156         650 FKTIKNGSISLHICRRLKSKK  670 (671)
Q Consensus       650 LK~sg~~~VtL~V~Rr~~~~~  670 (671)
                      |+..+ ..|.|+|.|+.+...
T Consensus        86 ~~~~~-~~v~l~v~R~~~~~~  105 (107)
T 1uhp_A           86 FKTAK-EPIVVQVLRRTSGPS  105 (107)
T ss_dssp             HHHCC-SSEEEEEEECCSSCS
T ss_pred             HHcCC-CcEEEEEEeCCCCCC
Confidence            99875 789999999886554

>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics, structural genomics consortium, SGC, signaling protein; 1.40A {Homo sapiens}

Probab=99.46  E-value=6.3e-13  Score=114.54  Aligned_cols=86  Identities=37%  Similarity=0.643  Sum_probs=76.2

Q ss_pred             ceeeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcC
Q psy1156         575 TFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIK  654 (671)
Q Consensus       575 ~~~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg  654 (671)
                      ..+.|+|.+.+ ..+|||.+.++.+.    .|++|..|.++|||+++|+|++||+|++|||+++.++++.+++.+++..+
T Consensus         4 ~~~~v~l~k~~-~~~lG~~~~~~~~~----~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~~   78 (92)
T 2qg1_A            4 DTLTIGLQKKP-GKGLGLSIVGKRND----TGVFVSDIVKGGIADADGRLMQGDQILMVNGEDVRNATQEAVAALLKCSL   78 (92)
T ss_dssp             CEEEEEEECCT-TSCCSEEEECCSSS----CSCEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHHCC
T ss_pred             eEEEEEEEeCC-CCcccEEEEeccCC----CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            45688998875 37999999987553    48999999999999999999999999999999999999999999999874


Q ss_pred             CCcEEEEEEeCC
Q psy1156         655 NGSISLHICRRL  666 (671)
Q Consensus       655 ~~~VtL~V~Rr~  666 (671)
                       +.|.|+|.|+.
T Consensus        79 -~~v~l~v~R~~   89 (92)
T 2qg1_A           79 -GTVTLEVGRIS   89 (92)
T ss_dssp             -SEEEEEEECCC
T ss_pred             -CeEEEEEEccc
Confidence             78999998875

>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.46  E-value=4.3e-13  Score=118.79  Aligned_cols=91  Identities=36%  Similarity=0.606  Sum_probs=78.7

Q ss_pred             ceeeEEEeeCCCCCcccEEEecCCCCC---CCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHH
Q psy1156         575 TFHTIVFEKGPGKKGLGFTIVGGKDSP---RGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFK  651 (671)
Q Consensus       575 ~~~~V~L~K~~g~~~LGfsL~Gg~ds~---~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK  651 (671)
                      ....|.|.+..  .+|||+|.++.+.+   .+..|++|..|.++|||+++|+|++||+|++|||++|.++++.+++.+|+
T Consensus         7 ~~~~v~l~~~~--~glG~~l~~g~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~l~   84 (105)
T 1wha_A            7 GRHVACLARSE--RGLGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGDRVLSINGVDVTEARHDHAVSLLT   84 (105)
T ss_dssp             EEEEEEECCCT--TCCSCEEECCTTSCCSSTTCCSCEEEECCTTSSHHHHSSCCTTCEEEEESSCBCTTCCHHHHHHHHT
T ss_pred             eeEEEEEEeCC--CccCEEEEeccCCCcccCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            45678888775  78999999987643   23468999999999999999999999999999999999999999999999


Q ss_pred             hcCCCcEEEEEEeCCCC
Q psy1156         652 TIKNGSISLHICRRLKS  668 (671)
Q Consensus       652 ~sg~~~VtL~V~Rr~~~  668 (671)
                      ..+ ..|.|+|.|+...
T Consensus        85 ~~g-~~v~l~v~R~~~~  100 (105)
T 1wha_A           85 AAS-PTIALLLEREAGS  100 (105)
T ss_dssp             SCC-SCEEEEEEECCCC
T ss_pred             cCC-CeEEEEEEECCCC
Confidence            874 7899999998743

>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; Cys Ser mutant, S genomics consortium, SGC, transferase; 2.00A {Homo sapiens}

Probab=99.45  E-value=2.8e-13  Score=116.27  Aligned_cols=86  Identities=28%  Similarity=0.541  Sum_probs=75.4

Q ss_pred             eeeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcCC
Q psy1156         576 FHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKN  655 (671)
Q Consensus       576 ~~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg~  655 (671)
                      .+.|.|.+..  .+|||.+.++.+..   .|++|..|.++|||+++|+|++||+|++|||++|.++++.+++.+|+..+.
T Consensus         3 ~~~v~l~~~~--~g~G~~~~~g~~~~---~~~~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~   77 (90)
T 2q9v_A            3 EQDIFLWRKE--TGFGFRILGGNEPG---EPIYIGHIVPLGAADTDGRLRSGDELISVDGTPVIGKSHQLVVQLMQQAAK   77 (90)
T ss_dssp             EEEEEEECBT--TBCCEEEEECSSTT---SCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTSCHHHHHHHHHHHHH
T ss_pred             cEEEEEEECC--CccCEEEEccccCC---CCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCC
Confidence            4678898886  78999999876543   479999999999999999999999999999999999999999999988742


Q ss_pred             -CcEEEEEEeCC
Q psy1156         656 -GSISLHICRRL  666 (671)
Q Consensus       656 -~~VtL~V~Rr~  666 (671)
                       +.|.|+|.|+.
T Consensus        78 ~~~v~l~v~R~~   89 (90)
T 2q9v_A           78 QGHVNLTVRQTR   89 (90)
T ss_dssp             HTEEEEEEEECC
T ss_pred             CCeEEEEEEecc
Confidence             37999998863

>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti density, glutametergic receptors, carbohydrate metabolism, cycle, cell division; HET: MES; 1.85A {Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A

Probab=99.45  E-value=4e-13  Score=130.21  Aligned_cols=88  Identities=31%  Similarity=0.591  Sum_probs=77.2

Q ss_pred             ceeeEEEeeCCCCCcccEEEec---CCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHH
Q psy1156         575 TFHTIVFEKGPGKKGLGFTIVG---GKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFK  651 (671)
Q Consensus       575 ~~~~V~L~K~~g~~~LGfsL~G---g~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK  651 (671)
                      ....|.|.++.  .+|||+|.+   +.+...+..||||..|.++|||+++|+|++||+|++|||++|.+++|.+++.+|+
T Consensus        80 ~~~~v~l~k~~--~glG~~i~g~~~g~~~~~~~~gi~V~~V~~gspA~~aG~L~~GD~Il~VNG~~v~~~~~~~~~~~l~  157 (170)
T 3egg_C           80 ELFPVELEKDS--EGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLR  157 (170)
T ss_dssp             EEEEEEEECBT--TBSSEEEEEECSSSSCCSSSBEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTBCHHHHHHHHH
T ss_pred             eEEEEEEEeCC--CeEeEEEEecccCCccccCCCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            45678888886  789999998   4443334578999999999999999999999999999999999999999999999


Q ss_pred             hcCCCcEEEEEEeC
Q psy1156         652 TIKNGSISLHICRR  665 (671)
Q Consensus       652 ~sg~~~VtL~V~Rr  665 (671)
                      ..+ ..|.|+|.|.
T Consensus       158 ~~g-~~v~L~V~R~  170 (170)
T 3egg_C          158 NTK-GRVRFMIGRE  170 (170)
T ss_dssp             HCC-SEEEEEEEEC
T ss_pred             cCC-CEEEEEEEeC
Confidence            975 7999999884

>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain, RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2css_A 1zub_A

Probab=99.45  E-value=3.6e-13  Score=124.71  Aligned_cols=82  Identities=28%  Similarity=0.423  Sum_probs=73.6

Q ss_pred             CCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhc-CCCcEEEEEEeC
Q psy1156         587 KKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTI-KNGSISLHICRR  665 (671)
Q Consensus       587 ~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~s-g~~~VtL~V~Rr  665 (671)
                      ..+|||.|.++.+...+..|+||..|.++|||+++|+|++||+|++|||++|.+++|.+++.+|+.. +...|.|+|.|+
T Consensus        47 ~~~lG~~i~gg~~~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~  126 (131)
T 1wfg_A           47 GAMLGLKVVGGKMTESGRLCAFITKVKKGSLADTVGHLRPGDEVLEWNGRLLQGATFEEVYNIILESKPEPQVELVVSRS  126 (131)
T ss_dssp             CTTTTEEEEEEEECSSSCEEEEEEEECTTSHHHHTSCCCTTCEEEEETTEECTTCCHHHHHHHHHHTSSSSEEEEEEEEE
T ss_pred             CCCCCEEEecCccCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhcCCCCEEEEEEEcC
Confidence            4789999999877665567999999999999999999999999999999999999999999999987 346899999998


Q ss_pred             CCC
Q psy1156         666 LKS  668 (671)
Q Consensus       666 ~~~  668 (671)
                      .+.
T Consensus       127 g~~  129 (131)
T 1wfg_A          127 GPS  129 (131)
T ss_dssp             CSC
T ss_pred             CCC
Confidence            754

>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural proteomics in europe, spine, structural genomics, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.45  E-value=5e-13  Score=118.80  Aligned_cols=91  Identities=25%  Similarity=0.512  Sum_probs=80.6

Q ss_pred             ceeeEEEeeCCCCCcccEEEe-----cCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHH
Q psy1156         575 TFHTIVFEKGPGKKGLGFTIV-----GGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISL  649 (671)
Q Consensus       575 ~~~~V~L~K~~g~~~LGfsL~-----Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~l  649 (671)
                      ..+.|.|.+..  .+|||+|.     ++.+......|++|..|.++|||+++|+|++||+|++|||++|.++++.+++.+
T Consensus         9 ~~~~v~l~k~~--~~lG~~i~~~~~~gg~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~   86 (108)
T 1q7x_A            9 DIFEVELAKND--NSLGISVTVLFDKGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVET   86 (108)
T ss_dssp             SEEEEEEESSS--CSCCEEESSSSSSBCBCTTSSSCCCBEEEECTTSTHHHHTCCCSSCEEEEETTEECBSCTTSHHHHH
T ss_pred             cEEEEEEEECC--CCccEEEEEeccCCCccccCCCCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHH
Confidence            56788998875  79999999     777655455699999999999999999999999999999999999999999999


Q ss_pred             HHhcCCCcEEEEEEeCCCC
Q psy1156         650 FKTIKNGSISLHICRRLKS  668 (671)
Q Consensus       650 LK~sg~~~VtL~V~Rr~~~  668 (671)
                      ++..+ ..|.|+|.|+...
T Consensus        87 ~~~~g-~~v~l~v~R~~~~  104 (108)
T 1q7x_A           87 LRNTG-QVVHLLLEKGQSP  104 (108)
T ss_dssp             HHHTT-SEEEEEEECCCCS
T ss_pred             HHcCC-CeEEEEEEeCCcc
Confidence            99874 8899999998654

>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission, protein binding; NMR {Rattus norvegicus}

Probab=99.45  E-value=3.8e-13  Score=120.51  Aligned_cols=92  Identities=29%  Similarity=0.561  Sum_probs=79.2

Q ss_pred             ceeeEEEeeCCCCCcccEEEec---CCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHH
Q psy1156         575 TFHTIVFEKGPGKKGLGFTIVG---GKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFK  651 (671)
Q Consensus       575 ~~~~V~L~K~~g~~~LGfsL~G---g~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK  651 (671)
                      ..+.|.|.+..  .+|||+|.+   +.+......|++|..|.++|||+++|+|++||+|++|||++|.++++.+++.+++
T Consensus         4 ~~~~v~l~k~~--~glG~~l~~~~~~~~~~~~~~g~~V~~V~~~s~A~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~   81 (113)
T 2g5m_B            4 ELFPVELEKDS--EGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLR   81 (113)
T ss_dssp             EEEEEECCCCS--SCCCCEEEEEECCCCSSSCCEEEEEEECCTTSHHHHHTCSCTTCBEEEETTEECSSCCHHHHHHHHH
T ss_pred             EEEEEEEEeCC--CCCCEEEEecCCCCcCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHh
Confidence            45678887765  899999998   5444334569999999999999999999999999999999999999999999999


Q ss_pred             hcCCCcEEEEEEeCCCCC
Q psy1156         652 TIKNGSISLHICRRLKSK  669 (671)
Q Consensus       652 ~sg~~~VtL~V~Rr~~~~  669 (671)
                      ..+ ..|.|+|.|+.+..
T Consensus        82 ~~g-~~v~l~v~R~~~~~   98 (113)
T 2g5m_B           82 NTK-GRVRFMIGRERPGE   98 (113)
T ss_dssp             HSC-SSCEEEEEECCCCT
T ss_pred             cCC-CeEEEEEEeCCCCC
Confidence            874 78999999987543

>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two alpha-helices, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1

Probab=99.44  E-value=9.9e-13  Score=113.07  Aligned_cols=85  Identities=25%  Similarity=0.435  Sum_probs=75.0

Q ss_pred             ceeeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcC
Q psy1156         575 TFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIK  654 (671)
Q Consensus       575 ~~~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg  654 (671)
                      ..+.|+|.+..+..+|||.|.++...    .|++|..|.++|||+++| |++||+|++|||+++.++++.+++.+++..+
T Consensus         6 ~~~~v~l~k~~~~~~~G~~~~~~~~~----~gv~V~~V~~~spA~~aG-l~~GD~I~~vng~~v~~~~~~~~~~~~~~~g   80 (91)
T 1m5z_A            6 ELHKVTLYKDSGMEDFGFSVADGLLE----KGVYVKNIRPAGPGDLGG-LKPYDRLLQVNHVRTRDFDCCLVVPLIAESG   80 (91)
T ss_dssp             EEEEEEEECCTTCSSSSEEEEECTTS----SCEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHTST
T ss_pred             ceEEEEEEECCCCCCccEEEEeccCC----CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            56789999876556899999987653    489999999999999999 9999999999999999999999999998764


Q ss_pred             CCcEEEEEEeC
Q psy1156         655 NGSISLHICRR  665 (671)
Q Consensus       655 ~~~VtL~V~Rr  665 (671)
                       ..|.|+|.|+
T Consensus        81 -~~v~l~v~R~   90 (91)
T 1m5z_A           81 -NKLDLVISRN   90 (91)
T ss_dssp             -TEEEEEEEEC
T ss_pred             -CEEEEEEEeC
Confidence             7899999886

>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.44  E-value=1.4e-12  Score=119.08  Aligned_cols=89  Identities=34%  Similarity=0.629  Sum_probs=77.9

Q ss_pred             cceeeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhc
Q psy1156         574 CTFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTI  653 (671)
Q Consensus       574 ~~~~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~s  653 (671)
                      ...+.|.|.+..  .+|||.|.++.+.   ..|++|..|.++|+|+++|+|++||+|++|||++|.++++.+++.+|+..
T Consensus        18 ~~~~~v~l~~~~--~glG~~~~~g~~~---~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~   92 (123)
T 1ueq_A           18 GTFLSTTLKKSN--MGFGFTIIGGDEP---DEFLQVKSVIPDGPAAQDGKMETGDVIVYINEVCVLGHTHADVVKLFQSV   92 (123)
T ss_dssp             SEEEEEEEECCT--TSCSEEEECCSSS---SCCCEEEEECTTSHHHHTSCCCTTCEEEEETTEECTTSCHHHHHHHHHTS
T ss_pred             CcEEEEEEEeCC--CceeEEEecccCC---CCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence            356678888875  7999999987653   25799999999999999999999999999999999999999999999986


Q ss_pred             C-CCcEEEEEEeCCC
Q psy1156         654 K-NGSISLHICRRLK  667 (671)
Q Consensus       654 g-~~~VtL~V~Rr~~  667 (671)
                      + ...|.|+|.|+..
T Consensus        93 ~~g~~v~l~v~R~~~  107 (123)
T 1ueq_A           93 PIGQSVNLVLCRGYP  107 (123)
T ss_dssp             CTTCEEEEEEEESCC
T ss_pred             CCCCeEEEEEEeCCC
Confidence            3 4789999999864

>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.44  E-value=3.2e-13  Score=119.38  Aligned_cols=90  Identities=30%  Similarity=0.526  Sum_probs=77.7

Q ss_pred             ceeeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcC
Q psy1156         575 TFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIK  654 (671)
Q Consensus       575 ~~~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg  654 (671)
                      ..+.|.|.+..  .+|||.|.++.+..   .|++|..|.++|||+++|+|++||+|++|||++|.++++.+++.+|+..+
T Consensus         9 ~~~~v~l~~~~--~g~G~~i~~g~~~~---~~~~V~~V~~~spA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~   83 (103)
T 1uep_A            9 KELDVHLRRME--SGFGFRILGGDEPG---QPILIGAVIAMGSADRDGRLHPGDELVYVDGIPVAGKTHRYVIDLMHHAA   83 (103)
T ss_dssp             EEECCEEESSS--SSCCEEECCCCSTT---SCCBEEEECTTSTTGGGTCCCTTCEEEEETTEECTTSCHHHHHHHHHHHH
T ss_pred             eEEEEEEEeCC--CccCEEEeeecCCC---CCeEEEEeCCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence            45678888864  78999999876532   58999999999999999999999999999999999999999999998863


Q ss_pred             -CCcEEEEEEeCCCCC
Q psy1156         655 -NGSISLHICRRLKSK  669 (671)
Q Consensus       655 -~~~VtL~V~Rr~~~~  669 (671)
                       ...|.|+|.|+....
T Consensus        84 ~g~~v~l~v~R~~~~~   99 (103)
T 1uep_A           84 RNGQVNLTVRRKVLSG   99 (103)
T ss_dssp             HHTEEEEEEEEECCCC
T ss_pred             CCCcEEEEEEeCCCCC
Confidence             378999999987543

>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A 2ocs_A

Probab=99.44  E-value=8.9e-13  Score=113.37  Aligned_cols=83  Identities=27%  Similarity=0.497  Sum_probs=72.8

Q ss_pred             eeeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcCC
Q psy1156         576 FHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKN  655 (671)
Q Consensus       576 ~~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg~  655 (671)
                      .+.|+|.|..  .+|||++.++.+.    .|++|..|.++|||+++| |++||+|++|||+++.++++.+++.+|+..+ 
T Consensus         4 ~r~v~l~r~~--~g~G~~~~~~~~~----~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~-   75 (91)
T 1g9o_A            4 PRLCCLEKGP--NGYGFHLHGEKGK----LGQYIRLVEPGSPAEKAG-LLAGDRLVEVNGENVEKETHQQVVSRIRAAL-   75 (91)
T ss_dssp             CEEEEEECBT--TBCCEEEEECTTC----SSEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHHTCS-
T ss_pred             cEEEEEEeCC--CcccEEEEecCCC----CCEEEEEECCCCHHHHCC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCC-
Confidence            4689999987  6899999987653    489999999999999999 9999999999999999999999999999875 


Q ss_pred             CcEEEEEEeCC
Q psy1156         656 GSISLHICRRL  666 (671)
Q Consensus       656 ~~VtL~V~Rr~  666 (671)
                      +.+.+++.|+.
T Consensus        76 ~~~~~~~~~r~   86 (91)
T 1g9o_A           76 NAVRLLVVDPE   86 (91)
T ss_dssp             SEEEEEEECCC
T ss_pred             CcEEEEEEcCC
Confidence            67766666654

>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.44  E-value=6.6e-13  Score=114.50  Aligned_cols=86  Identities=33%  Similarity=0.574  Sum_probs=75.6

Q ss_pred             eeeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcCC
Q psy1156         576 FHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKN  655 (671)
Q Consensus       576 ~~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg~  655 (671)
                      .+.|+|.|..  .+|||.|.++.+..   .|++|..|.++|||+++|.|++||+|++|||++|.++++.+++.+++..+ 
T Consensus         6 ~r~v~l~k~~--~glG~~l~~~~~~~---~~~~V~~V~~~spA~~aGgl~~GD~I~~vng~~v~~~~~~~~~~~~~~~~-   79 (93)
T 2dkr_A            6 SGVVELPKTD--EGLGFNIMGGKEQN---SPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEGEQHEKAVELLKAAQ-   79 (93)
T ss_dssp             SCEEEEECCT--TCCCEEEECSSSSS---CCCEEEEECTTSHHHHHCCCCTTCBEEEETTEECTTSCHHHHHHHHHHCC-
T ss_pred             CEEEEEEeCC--CCccEEEecccCCC---CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC-
Confidence            4688998875  89999999876532   58999999999999999669999999999999999999999999999875 


Q ss_pred             CcEEEEEEeCCC
Q psy1156         656 GSISLHICRRLK  667 (671)
Q Consensus       656 ~~VtL~V~Rr~~  667 (671)
                      +.|.|+|.|+..
T Consensus        80 ~~v~l~v~r~~~   91 (93)
T 2dkr_A           80 GSVKLVVRSGPS   91 (93)
T ss_dssp             SEEEEEECCCCS
T ss_pred             CcEEEEEEeCCC
Confidence            689999988764

>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.44  E-value=4.5e-13  Score=119.11  Aligned_cols=90  Identities=24%  Similarity=0.277  Sum_probs=76.9

Q ss_pred             eeeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhc--
Q psy1156         576 FHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTI--  653 (671)
Q Consensus       576 ~~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~s--  653 (671)
                      .+.|.|.+..  .+|||+|.++.+..  ..+++|..|.+++||+++|+|++||+|++|||+++.+++|++++++|+.+  
T Consensus         7 ~~~v~l~k~~--~glG~~i~gg~~~~--~~~~~I~~v~~~s~A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~   82 (103)
T 1ufx_A            7 GTLVRVKKSA--ATLGIAIEGGANTR--QPLPRIVTIQRGGSAHNCGQLKVGHVILEVNGLTLRGKEHREAARIIAEAFK   82 (103)
T ss_dssp             SEEEEEECCS--SSCCEEEECBTTSS--CSSCEEEEECTTSHHHHHCSSCTTCBCCEETTEECTTCBHHHHHHHHHHHHH
T ss_pred             eEEEEEEcCC--CcCCeEEECCCCCC--CCcEEEEEeCCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHHhcc
Confidence            4578887765  89999999987653  12459999999999999999999999999999999999999999999985  


Q ss_pred             --CCCcEEEEEEeCCCCC
Q psy1156         654 --KNGSISLHICRRLKSK  669 (671)
Q Consensus       654 --g~~~VtL~V~Rr~~~~  669 (671)
                        ....+.|+|.|..+..
T Consensus        83 ~~~~~~i~l~v~r~~~~~  100 (103)
T 1ufx_A           83 TKDRDYIDFLVTEFNSGP  100 (103)
T ss_dssp             CSSCSEEEEEECCCCCCT
T ss_pred             cCCCCeEEEEEEEcccCC
Confidence              4578999999877543

>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics consortium, SGC, protein BIN; 1.30A {Homo sapiens} SCOP: b.36.1.0

Probab=99.44  E-value=8.4e-13  Score=114.29  Aligned_cols=87  Identities=26%  Similarity=0.384  Sum_probs=74.8

Q ss_pred             ceeeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcC
Q psy1156         575 TFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIK  654 (671)
Q Consensus       575 ~~~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg  654 (671)
                      ..+.|.|.|..  .+|||.+.++..    ..|++|..|.++|||+++|+|++||+|++|||++|.+++|.+++.+|+..+
T Consensus         4 ~~r~v~l~k~~--~~lG~~i~~~~~----~~~~~V~~v~~gspA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~   77 (93)
T 3o46_A            4 SVKIIRLVKNR--EPLGATIKKDEQ----TGAIIVARIMRGGAADRSGLIHVGDELREVNGIPVEDKRPEEIIQILAQSQ   77 (93)
T ss_dssp             CCEEEEEEESS--SCCCEEEEECTT----TCCEEEEEECTTSHHHHHTCCCTTCEEEEETTEESTTSCHHHHHHHHHHCC
T ss_pred             cEEEEEEEeCC--CCccEEEEecCC----CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence            45688999975  699999987622    248999999999999999999999999999999999999999999999986


Q ss_pred             CCcEEEEEEeCCCC
Q psy1156         655 NGSISLHICRRLKS  668 (671)
Q Consensus       655 ~~~VtL~V~Rr~~~  668 (671)
                       +.|.|+|.|....
T Consensus        78 -~~v~l~v~~~~~~   90 (93)
T 3o46_A           78 -GAITFKIIPGSKE   90 (93)
T ss_dssp             -EEEEEEEECC---
T ss_pred             -CeEEEEEEeCCCC
Confidence             6899999886643

>3gge_A PDZ domain-containing protein GIPC2; structural genomics, structural genomics consort protein binding; 2.60A {Homo sapiens}

Probab=99.43  E-value=5.1e-13  Score=117.89  Aligned_cols=87  Identities=18%  Similarity=0.278  Sum_probs=75.3

Q ss_pred             CCCeEEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHh
Q psy1156         385 QEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIIS  464 (671)
Q Consensus       385 ~~~~~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~  464 (671)
                      .+..+.|.|.|..  ++|||+|.++..      ..+||++|.+||+|++.|.|++||+|++|||++|.+++|.+++.+|+
T Consensus         3 ~g~~k~V~l~K~~--~~LG~tI~~~g~------g~~~I~rI~~gg~a~r~g~L~vGD~I~~VNG~~v~g~~h~evv~lLk   74 (95)
T 3gge_A            3 KGIEKEVNVYKSE--DSLGLTITDNGV------GYAFIKRIKDGGVIDSVKTICVGDHIESINGENIVGWRHYDVAKKLK   74 (95)
T ss_dssp             CEEEEEEEEECCS--SCCCEEEECSSS------SCCEEEEECTTSHHHHCTTCCTTCEEEEETTEECTTCCHHHHHHHHH
T ss_pred             CCeEEEEEEEECC--CCceEEEEcCCC------CcEEEEEEcCCChHHhcCCCCCCCEEEEECCEEccCCCHHHHHHHHH
Confidence            3466899999954  899999996421      56899999999999999999999999999999999999999999999


Q ss_pred             c--CCCeEEEEEEeCCc
Q psy1156         465 S--GPLNMDLLISRTSL  479 (671)
Q Consensus       465 ~--~g~~V~L~V~R~~~  479 (671)
                      .  .+..++|++.++.+
T Consensus        75 ~~~~g~~~~L~lv~p~~   91 (95)
T 3gge_A           75 ELKKEELFTMKLIEPKK   91 (95)
T ss_dssp             HSCTTCEEEEEEEEECS
T ss_pred             hCCCCCEEEEEEECccc
Confidence            6  45688888887644

>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation, structural genomics, structural genomics consortium, SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A

Probab=99.43  E-value=8.8e-13  Score=113.31  Aligned_cols=85  Identities=27%  Similarity=0.454  Sum_probs=75.7

Q ss_pred             ceeeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcC
Q psy1156         575 TFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIK  654 (671)
Q Consensus       575 ~~~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg  654 (671)
                      ..+.|+|.++.  .+|||.+.++.+.    .|++|..|.++|||+++| |++||+|++|||++|.+++|.+++.+|+.. 
T Consensus         4 ~~r~v~l~k~~--~g~G~~~~~~~~~----~gv~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~-   75 (90)
T 2he4_A            4 RPRLCHLRKGP--QGYGFNLHSDKSR----PGQYIRSVDPGSPAARSG-LRAQDRLIEVNGQNVEGLRHAEVVASIKAR-   75 (90)
T ss_dssp             CCEEEEEECBT--TBCCEEEEECSSS----SSEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTSCHHHHHHHHTTS-
T ss_pred             CcEEEEEEECC--CCccEEEEccCCC----CCEEEEEECCCChHHHCC-CCCCCEEEEECCEECCCCCHHHHHHHHHcC-
Confidence            34689999987  7999999987653    489999999999999999 999999999999999999999999999987 


Q ss_pred             CCcEEEEEEeCCC
Q psy1156         655 NGSISLHICRRLK  667 (671)
Q Consensus       655 ~~~VtL~V~Rr~~  667 (671)
                      ...|.|+|.|...
T Consensus        76 ~~~v~l~v~r~~~   88 (90)
T 2he4_A           76 EDEARLLVVGPST   88 (90)
T ss_dssp             SSEEEEEEECCCC
T ss_pred             CCcEEEEEEccCC
Confidence            4789999988753

>2o2t_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 2.70A {Homo sapiens}

Probab=99.43  E-value=3.8e-13  Score=121.27  Aligned_cols=91  Identities=42%  Similarity=0.677  Sum_probs=79.2

Q ss_pred             ceeeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecC-CCCHHHHHHHHHhc
Q psy1156         575 TFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCH-DLTHLEAISLFKTI  653 (671)
Q Consensus       575 ~~~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~-~lSheEAV~lLK~s  653 (671)
                      ..+.|.|.+.. ..+|||++.++.+...+..|++|..|.++|||+++|+|++||+|++|||++|. ++++.+++.+|+..
T Consensus        20 ~~~~v~l~k~~-~~~lG~~i~~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~Il~ing~~v~~~~~~~~~~~~l~~~   98 (117)
T 2o2t_A           20 HVEVFELLKPP-SGGLGFSVVGLRSENRGELGIFVQEIQEGSVAHRDGRLKETDQILAINGQALDQTITHQQAISILQKA   98 (117)
T ss_dssp             CEEEEEEECCS-SSCSSCCEEEEECCC--CEEEEECCCCTTSHHHHHCCCCTTCEEEEETTEECCTTSCHHHHHHHHHHC
T ss_pred             eEEEEEEEECC-CCCCCEEEeecccCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCCHHHHHHHHHcC
Confidence            45689998875 37899999988765545579999999999999999999999999999999998 99999999999986


Q ss_pred             CCCcEEEEEEeCCC
Q psy1156         654 KNGSISLHICRRLK  667 (671)
Q Consensus       654 g~~~VtL~V~Rr~~  667 (671)
                      + ..|.|+|.|+..
T Consensus        99 ~-~~v~l~v~R~~~  111 (117)
T 2o2t_A           99 K-DTVQLVIARGSL  111 (117)
T ss_dssp             C-SEEEEEEESSCC
T ss_pred             C-CEEEEEEEeCCc
Confidence            4 789999998764

>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.43  E-value=7.6e-13  Score=119.79  Aligned_cols=93  Identities=32%  Similarity=0.501  Sum_probs=79.1

Q ss_pred             ceeeEEEeeCCC-----CCcccEEEecCCCCCC--CCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHH
Q psy1156         575 TFHTIVFEKGPG-----KKGLGFTIVGGKDSPR--GAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAI  647 (671)
Q Consensus       575 ~~~~V~L~K~~g-----~~~LGfsL~Gg~ds~~--g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV  647 (671)
                      ....|.|.+...     ..+|||+|.++.+.+.  +..|++|..|.++|||+++|+|++||+|++|||++|.+++|.+++
T Consensus        12 ~~~~v~l~r~~~~~~~~~~glG~~i~g~~~~~~~~~~~g~~V~~v~~~s~A~~aG~L~~GD~Il~vng~~v~~~~~~~~~   91 (117)
T 1ujd_A           12 PHARIKITRDSKDHTVSGNGLGIRIVGGKEIPGHSGEIGAYIAKILPGGSAEQTGKLMEGMQVLEWNGIPLTSKTYEEVQ   91 (117)
T ss_dssp             CEEEEEECCCSSSSCSSCCSCSEEEEEEEECSSSSSCEEEEEEEECTTCHHHHHSSCCTTCEEEEETTEECTTCCHHHHH
T ss_pred             ceEEEEEEecCcccCCCCCcccEEEeCCCCCCcccCCcCEEEEEECCCCHHHHcCCCCCCCEEEEECCEEcCCCCHHHHH
Confidence            456788888752     2689999998876431  345899999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCCcEEEEEEeCCCC
Q psy1156         648 SLFKTIKNGSISLHICRRLKS  668 (671)
Q Consensus       648 ~lLK~sg~~~VtL~V~Rr~~~  668 (671)
                      .+|+..+ ..|.|+|.|+...
T Consensus        92 ~~l~~~~-~~v~l~v~R~~~~  111 (117)
T 1ujd_A           92 SIISQQS-GEAEICVRLDLNM  111 (117)
T ss_dssp             HHHSCCS-SCEEEEEESSCCC
T ss_pred             HHHhcCC-CEEEEEEEECCcc
Confidence            9999864 7899999988653

>2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; PDZ, E6 binding, tumor suppressor, peptide binding protein; 2.15A {Mus musculus}

Probab=99.43  E-value=1.2e-12  Score=111.21  Aligned_cols=83  Identities=34%  Similarity=0.647  Sum_probs=72.4

Q ss_pred             eeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcC-C
Q psy1156         577 HTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIK-N  655 (671)
Q Consensus       577 ~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg-~  655 (671)
                      .+|+|.|..  .+|||.+.++.+.   ..|++|..|.++|||+++|+|++||+|++|||+++.++++.+++.+|+..+ .
T Consensus         2 ~~v~l~k~~--~g~G~~i~~~~~~---~~~~~V~~v~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~g   76 (85)
T 2i04_A            2 IHTKLRKSS--RGFGFTVVGGDEP---DEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKIFQSIPIG   76 (85)
T ss_dssp             EEEEEECBT--TBSSEEEEECCST---TBCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTSCTT
T ss_pred             EEEEEEECC--CCCCEEEEcccCC---CCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCC
Confidence            367888876  7899999987553   257999999999999999999999999999999999999999999999874 3


Q ss_pred             CcEEEEEEe
Q psy1156         656 GSISLHICR  664 (671)
Q Consensus       656 ~~VtL~V~R  664 (671)
                      ..|.|+|.|
T Consensus        77 ~~v~l~v~R   85 (85)
T 2i04_A           77 ASVDLELCR   85 (85)
T ss_dssp             CEEEEEEEC
T ss_pred             CeEEEEEEC
Confidence            679999876

>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1

Probab=99.43  E-value=9e-13  Score=113.59  Aligned_cols=85  Identities=24%  Similarity=0.386  Sum_probs=73.5

Q ss_pred             eeeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcCC
Q psy1156         576 FHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKN  655 (671)
Q Consensus       576 ~~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg~  655 (671)
                      .+.|.|.|.++ .+|||++.+...     .+++|..|.++|||+++|.|++||+|++|||+++.+++|++++.+|+..+ 
T Consensus         2 ~r~V~l~K~~~-~~lG~~i~~~~~-----~~~~I~~V~~gspA~~~agL~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~-   74 (88)
T 1kwa_A            2 SRLVQFQKNTD-EPMGITLKMNEL-----NHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMR-   74 (88)
T ss_dssp             CEEEEEEECSS-SCCCEEEECSCG-----GGEEEEEECTTSHHHHHTCCCTTCEEEEETTEEGGGSCHHHHHHHHHHCC-
T ss_pred             eEEEEEEeCCC-CceeEEEEeCCC-----CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHhcCC-
Confidence            35789999863 789999987422     47999999999999994449999999999999999999999999999986 


Q ss_pred             CcEEEEEEeCCC
Q psy1156         656 GSISLHICRRLK  667 (671)
Q Consensus       656 ~~VtL~V~Rr~~  667 (671)
                      +.|+|+|.|...
T Consensus        75 ~~v~l~v~r~~~   86 (88)
T 1kwa_A           75 GSITFKIVPSYR   86 (88)
T ss_dssp             EEEEEEEECCCC
T ss_pred             CcEEEEEECCcC
Confidence            599999988654

>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor (LCF), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.2

Probab=99.42  E-value=1.4e-12  Score=118.06  Aligned_cols=91  Identities=27%  Similarity=0.580  Sum_probs=77.1

Q ss_pred             ceeeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcC
Q psy1156         575 TFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIK  654 (671)
Q Consensus       575 ~~~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg  654 (671)
                      ..+.|.|.+.. ..+|||.|.++.+..  ..|++|..|.++|||+++|+|++||+|++|||++|.+++|.+++.+|+..+
T Consensus        15 ~~~~v~l~~~~-~~~lG~~i~g~~~~~--~~gv~V~~V~~~spA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~   91 (119)
T 1x6d_A           15 GIHVTILHKEE-GAGLGFSLAGGADLE--NKVITVHRVFPNGLASQEGTIQKGNEVLSINGKSLKGTTHHDALAILRQAR   91 (119)
T ss_dssp             TEEEEEEECCT-TSCCSEEEECCSSSS--CSSCEEEEECSSSHHHHHTSSCTTCBCCEETTEECSSCCHHHHHHHHHHTT
T ss_pred             CeEEEEEEeCC-CCccCEEEeCCCCCC--CCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence            45677777764 489999999887642  358999999999999999999999999999999999999999999999887


Q ss_pred             CCcEEEEEEeCCCC
Q psy1156         655 NGSISLHICRRLKS  668 (671)
Q Consensus       655 ~~~VtL~V~Rr~~~  668 (671)
                      ...+.|+|.|+.+.
T Consensus        92 ~~~~~l~v~R~~~~  105 (119)
T 1x6d_A           92 EPRQAVIVTRKLTP  105 (119)
T ss_dssp             SSSEEEEEEECCCS
T ss_pred             CCeEEEEEEcCCCc
Confidence            55677888887653

>4amh_A Disks large homolog 1; permutation, protein folding, structural protein; 2.30A {Homo sapiens}

Probab=99.42  E-value=8.8e-13  Score=117.48  Aligned_cols=80  Identities=34%  Similarity=0.641  Sum_probs=72.5

Q ss_pred             CCcccEEEecCCCCCC--CCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcCCCcEEEEEEe
Q psy1156         587 KKGLGFTIVGGKDSPR--GAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKNGSISLHICR  664 (671)
Q Consensus       587 ~~~LGfsL~Gg~ds~~--g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg~~~VtL~V~R  664 (671)
                      ..+|||+|.||.+...  +..|++|..|.++|||+++|+|++||+|++|||++|.++++.+++.+++..+ +.|.|+|.|
T Consensus        12 ~~~~Gf~i~gG~~~~~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~-~~v~l~v~R   90 (106)
T 4amh_A           12 SKGLGFSIAGGVGNQHWPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVALEEVTHEEAVTALKNTS-DFVYLKVAK   90 (106)
T ss_dssp             CCCSCEEEEECTTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHSCC-SEEEEEEEC
T ss_pred             CCccCEEEEeccCCccccCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHhCCC-CeEEEEEEe
Confidence            3899999999987653  4558999999999999999999999999999999999999999999999875 699999999


Q ss_pred             CCC
Q psy1156         665 RLK  667 (671)
Q Consensus       665 r~~  667 (671)
                      +..
T Consensus        91 ~~~   93 (106)
T 4amh_A           91 PGS   93 (106)
T ss_dssp             CSS
T ss_pred             CCC
Confidence            764

>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc, LNX2_human, zinc-finger, polymorphism, ring finger protein 1; 1.3A {Homo sapiens}

Probab=99.42  E-value=1.1e-12  Score=113.93  Aligned_cols=88  Identities=28%  Similarity=0.466  Sum_probs=79.2

Q ss_pred             CeEEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhcC
Q psy1156         387 GQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSG  466 (671)
Q Consensus       387 ~~~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~~  466 (671)
                      +++.|.|.|..++.+|||++.++...     .|++|..|.++|||+++|.|++||+|++|||+++.++++.++...++..
T Consensus         3 ~~~~v~l~k~~~~~~lG~~~~~~~~~-----~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~   77 (95)
T 2vwr_A            3 EILQVALHKRDSGEQLGIKLVRRTDE-----PGVFILDLLEGGLAAQDGRLSSNDRVLAINGHDLKYGTPELAAQIIQAS   77 (95)
T ss_dssp             EEEEEEEECSSTTCCCCEEEEECSSS-----CSEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHC
T ss_pred             EEEEEEEEECCCCCcccEEEEeccCC-----CCEEEEEeCCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence            46789999866678999999986543     6899999999999999999999999999999999999999999999988


Q ss_pred             CCeEEEEEEeCCc
Q psy1156         467 PLNMDLLISRTSL  479 (671)
Q Consensus       467 g~~V~L~V~R~~~  479 (671)
                      +..+.|+|.|.+.
T Consensus        78 g~~v~l~v~R~~~   90 (95)
T 2vwr_A           78 GERVNLTIARPGK   90 (95)
T ss_dssp             CSEEEEEEEEESC
T ss_pred             CCEEEEEEEcCCc
Confidence            8999999999765

>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane protein 25, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.42  E-value=1e-12  Score=119.21  Aligned_cols=92  Identities=45%  Similarity=0.756  Sum_probs=80.1

Q ss_pred             cceeeEEEeeCCCCCcccEEEecCCCCCC--CCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHH
Q psy1156         574 CTFHTIVFEKGPGKKGLGFTIVGGKDSPR--GAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFK  651 (671)
Q Consensus       574 ~~~~~V~L~K~~g~~~LGfsL~Gg~ds~~--g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK  651 (671)
                      ...+.|.|.+..  .+|||+|.++.+.+.  ...|++|..|.++|||+++|+|++||+|++|||++|.+++|.+++.+++
T Consensus        16 ~~~~~v~l~r~~--~~lG~~i~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~~~   93 (120)
T 2eno_A           16 VTEEEINLTRGP--SGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFR   93 (120)
T ss_dssp             EEEEEEEEECCS--SSCSEEEECCTTTCSSSSCCSEEEEEECSSSHHHHSCCSCTTCEEEEETTEECCSCCHHHHHHHHH
T ss_pred             CceEEEEEEECC--CCCCEEEecccCCccccCCCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            356789999886  899999999876432  2458999999999999999999999999999999999999999999999


Q ss_pred             hcCCCcEEEEEEeCCCC
Q psy1156         652 TIKNGSISLHICRRLKS  668 (671)
Q Consensus       652 ~sg~~~VtL~V~Rr~~~  668 (671)
                      ..+ ..|.|+|.|+...
T Consensus        94 ~~g-~~v~l~v~R~~~~  109 (120)
T 2eno_A           94 NAG-YAVSLRVQHRLQV  109 (120)
T ss_dssp             HHC-SEEEEEEEEEEEC
T ss_pred             cCC-CeEEEEEEeCCcC
Confidence            874 7899999997653

>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic}

Probab=99.42  E-value=1.8e-12  Score=115.08  Aligned_cols=93  Identities=24%  Similarity=0.474  Sum_probs=78.0

Q ss_pred             ceeeEEEeeCCCCCcccEEEecCCCCCC--CCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHh
Q psy1156         575 TFHTIVFEKGPGKKGLGFTIVGGKDSPR--GAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKT  652 (671)
Q Consensus       575 ~~~~V~L~K~~g~~~LGfsL~Gg~ds~~--g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~  652 (671)
                      ..+.|.|.+..+..+|||.+.++.+...  ...|++|..|.++|||+++|+|++||+|++|||++|.++++.+++.+|+.
T Consensus        12 ~~~~v~l~r~~~~~~lG~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~   91 (108)
T 2jre_A           12 SLYSVELFREKDTSSLGISISGMRDQSTTGEATGIYVKSLIPGSAAALDGRIEPNDKILRVDDVNVQGMAQSDVVEVLRN   91 (108)
T ss_dssp             EEEEEEEECCSTTSCCSEEEECCCCCSCSSCCCCCEEEEECTTSHHHHHSSCCSSEEEEEETTEECTTSCHHHHHHHHHH
T ss_pred             EEEEEEEEecCCCCCcCEEEEcccCCCCCCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc
Confidence            4567788543345899999998765432  34589999999999999999999999999999999999999999999988


Q ss_pred             cCCCcEEEEEEeCCCC
Q psy1156         653 IKNGSISLHICRRLKS  668 (671)
Q Consensus       653 sg~~~VtL~V~Rr~~~  668 (671)
                      .+ ..|.|+|.|+...
T Consensus        92 ~g-~~v~l~v~R~~~~  106 (108)
T 2jre_A           92 AG-NPVRLLLIRRLPL  106 (108)
T ss_dssp             HC-SEEEEEEEECCCC
T ss_pred             CC-CeEEEEEEeCCcC
Confidence            54 7899999998754

>2jil_A GRIP1 protein, glutamate receptor interacting protein-1; endoplasmic reticulum, postsynaptic membrane, membrane, MEMB protein; 1.5A {Homo sapiens}

Probab=99.42  E-value=1.4e-12  Score=113.43  Aligned_cols=90  Identities=27%  Similarity=0.420  Sum_probs=76.9

Q ss_pred             eeeEEEeeCCCCCcccEEEecCCCCC-CCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcC
Q psy1156         576 FHTIVFEKGPGKKGLGFTIVGGKDSP-RGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIK  654 (671)
Q Consensus       576 ~~~V~L~K~~g~~~LGfsL~Gg~ds~-~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg  654 (671)
                      ...|.|.+..  .+|||++.++.+.. ....|++|..|.++|||+++|+|++||+|++|||+++.++++.+++.+|+.. 
T Consensus         4 ~~~v~l~k~~--~~lG~~i~~~~~~~~~~~~~~~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~-   80 (97)
T 2jil_A            4 TVEVTLHKEG--NTFGFVIRGGAHDDRNKSRPVVITSVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQC-   80 (97)
T ss_dssp             EEEEEEECBT--TBCSEEEEEECCSCC--CEEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHHS-
T ss_pred             EEEEEEEeCC--CccCEEEeCcccCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-
Confidence            4578888764  79999999886532 1245899999999999999999999999999999999999999999999984 


Q ss_pred             CCcEEEEEEeCCCC
Q psy1156         655 NGSISLHICRRLKS  668 (671)
Q Consensus       655 ~~~VtL~V~Rr~~~  668 (671)
                      ...|.|+|.|+...
T Consensus        81 g~~v~l~v~R~~~~   94 (97)
T 2jil_A           81 GQEAALLIEYDVSE   94 (97)
T ss_dssp             CSEEEEEEEEECCC
T ss_pred             CCeEEEEEEeCCCc
Confidence            47899999997654

>2opg_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 1.50A {Homo sapiens}

Probab=99.41  E-value=2.2e-12  Score=112.44  Aligned_cols=90  Identities=37%  Similarity=0.555  Sum_probs=78.1

Q ss_pred             ceeeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcC
Q psy1156         575 TFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIK  654 (671)
Q Consensus       575 ~~~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg  654 (671)
                      ..+.|.|.+..  .+|||++.++.+..  ..|++|..|.++|||+++|+|++||+|++|||+++.++++.+++.+++..+
T Consensus         4 ~~~~v~l~~~~--~~lG~~l~~~~~~~--~~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~   79 (98)
T 2opg_A            4 CETTIEISKGR--TGLGLSIVGGSDTL--LGAIIIHEVYEEGAACKDGRLWAGDQILEVNGIDLRKATHDEAINVLRQTP   79 (98)
T ss_dssp             EEEEEEEECBT--TBTCEEEEECTTST--TCSEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTCC
T ss_pred             CEEEEEEEECC--CcccEEEecCCCCC--CCCEEEEEECCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence            34678888875  78999999876543  248999999999999999999999999999999999999999999999875


Q ss_pred             CCcEEEEEEeCCCCC
Q psy1156         655 NGSISLHICRRLKSK  669 (671)
Q Consensus       655 ~~~VtL~V~Rr~~~~  669 (671)
                       ..|.|+|.|+....
T Consensus        80 -~~v~l~v~R~~~~~   93 (98)
T 2opg_A           80 -QRVRLTLYRDEAPY   93 (98)
T ss_dssp             -SEEEEEEEECSSCC
T ss_pred             -CeEEEEEEcCCCCC
Confidence             78999999977543

>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A

Probab=99.41  E-value=2.6e-12  Score=112.05  Aligned_cols=88  Identities=28%  Similarity=0.380  Sum_probs=75.4

Q ss_pred             ceeeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcC
Q psy1156         575 TFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIK  654 (671)
Q Consensus       575 ~~~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg  654 (671)
                      ..+.|.|.+..  .+|||.+.++.+..   .|++|..|.++|||+++|+|++||+|++|||++|.++++.+++.+|+.. 
T Consensus         5 ~~~~v~l~~~~--~~lG~~i~~~~~~~---~~~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~-   78 (97)
T 1n7e_A            5 IIYTVELKRYG--GPLGITISGTEEPF---DPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMA-   78 (97)
T ss_dssp             CEEEEEEECTT--SCCCEEEECCSSTT---SCCEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHTC-
T ss_pred             eEEEEEEEeCC--CCcCEEEEcccCCC---CCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-
Confidence            45678887664  77999999875432   4899999999999999999999999999999999999999999999865 


Q ss_pred             CCcEEEEEEeCCCC
Q psy1156         655 NGSISLHICRRLKS  668 (671)
Q Consensus       655 ~~~VtL~V~Rr~~~  668 (671)
                      ...|.|+|.|+...
T Consensus        79 g~~v~l~v~R~~~~   92 (97)
T 1n7e_A           79 GETVTLKIKKQTDA   92 (97)
T ss_dssp             CSEEEEEEECCCCC
T ss_pred             CCeEEEEEEeCCCC
Confidence            47899999987654

>3i4w_A Disks large homolog 4; alpha and beta protein, alternative splicing, cell junction, cell membrane, lipoprotein, membrane, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.36.1.1 PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A

Probab=99.41  E-value=1.7e-12  Score=114.18  Aligned_cols=85  Identities=35%  Similarity=0.585  Sum_probs=75.6

Q ss_pred             ceeeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcC
Q psy1156         575 TFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIK  654 (671)
Q Consensus       575 ~~~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg  654 (671)
                      ..+.|+|.+..  .+|||.+.++.+.    .|++|..|.++|||+++|+|++||+|++|||++|.++++.+++.+++..+
T Consensus        11 ~~~~v~l~k~~--~glG~~~~~~~~~----~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~   84 (104)
T 3i4w_A           11 EPRRIVIHRGS--TGLGFNIVGGEXG----EGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAG   84 (104)
T ss_dssp             SCEEEEEECBT--TBTSEEEEECC-C----CCEEEEEECTTSHHHHHCCCCTTEEEEEETTEECTTCCHHHHHHHHHTSC
T ss_pred             ccEEEEEEeCC--CccCEEEECCCCC----CCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            45689999885  7899999988653    38999999999999999999999999999999999999999999999874


Q ss_pred             CCcEEEEEEeCC
Q psy1156         655 NGSISLHICRRL  666 (671)
Q Consensus       655 ~~~VtL~V~Rr~  666 (671)
                       ..|.|+|.|+.
T Consensus        85 -~~v~l~v~r~~   95 (104)
T 3i4w_A           85 -QTVTIIAQYKP   95 (104)
T ss_dssp             -SEEEEEEEECH
T ss_pred             -CeEEEEEEECc
Confidence             78999999874

>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural genomics, structural genomics consortium, SGC, metal-binding; 1.75A {Homo sapiens}

Probab=99.41  E-value=1.6e-12  Score=118.56  Aligned_cols=90  Identities=19%  Similarity=0.330  Sum_probs=79.2

Q ss_pred             CeEEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhcC
Q psy1156         387 GQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSG  466 (671)
Q Consensus       387 ~~~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~~  466 (671)
                      ..+.|.|.+. +.++|||+|.++.....+. .|++|..|.++|||+++|+|++||+|++|||+++.++++.+++.+|+..
T Consensus        24 ~~~~v~l~k~-~~~~lGf~i~gg~~~~~~~-~gv~V~~V~~gspA~~aG~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~  101 (118)
T 3b76_A           24 HEKVVNIQKD-PGESLGMTVAGGASHREWD-LPIYVISVEPGGVISRDGRIKTGDILLNVDGVELTEVSRSEAVALLKRT  101 (118)
T ss_dssp             EEEEEEEECC-TTCCCCEEEEECSCSTTCC-CCEEEEEECTTSHHHHHCSSCTTCEEEEETTEEGGGSCHHHHHHHHHSC
T ss_pred             CcEEEEEEeC-CCCccCEEEecCCCCCCCC-CCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence            4578888864 4689999999987543333 7899999999999999999999999999999999999999999999988


Q ss_pred             CCeEEEEEEeCC
Q psy1156         467 PLNMDLLISRTS  478 (671)
Q Consensus       467 g~~V~L~V~R~~  478 (671)
                      +..|.|+|.|..
T Consensus       102 ~~~v~L~v~R~~  113 (118)
T 3b76_A          102 SSSIVLKALEVK  113 (118)
T ss_dssp             CSEEEEEEEEEE
T ss_pred             CCeEEEEEEECC
Confidence            999999998853

>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; PDZ domain, ATP-binding, cell junction, cell membrane; NMR {Homo sapiens} PDB: 2kpl_A

Probab=99.40  E-value=2e-12  Score=119.15  Aligned_cols=89  Identities=33%  Similarity=0.617  Sum_probs=77.6

Q ss_pred             cceeeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhc
Q psy1156         574 CTFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTI  653 (671)
Q Consensus       574 ~~~~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~s  653 (671)
                      .....|.|.++.  .+|||.+.++.+.   ..|++|..|.++|+|+++|+|++||+|++|||++|.+++|.+++.+|+..
T Consensus        17 g~~~~v~l~~~~--~g~G~~i~g~~~~---~~~v~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~l~~~   91 (129)
T 2kpk_A           17 GKFIHTKLRKSS--RGFGFTVVGGDEP---DEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKIFQSI   91 (129)
T ss_dssp             SEEEEEEEEECS--SCCSEEEEEEEET---TEEEEEEEECTTSHHHHHSSCCTTCEEEEETTEECTTSCHHHHHHHHHHS
T ss_pred             CcEEEEEEEECC--CcccEEEeCccCC---CCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence            355678898875  7999999986542   25799999999999999999999999999999999999999999999987


Q ss_pred             C-CCcEEEEEEeCCC
Q psy1156         654 K-NGSISLHICRRLK  667 (671)
Q Consensus       654 g-~~~VtL~V~Rr~~  667 (671)
                      + ...|.|+|.|+..
T Consensus        92 ~~g~~v~l~v~R~~~  106 (129)
T 2kpk_A           92 PIGASVDLELCRGYP  106 (129)
T ss_dssp             CTTEEEEEEEEECSC
T ss_pred             CCCCeEEEEEEeCCC
Confidence            4 3679999999864

>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer, membrane protein-oxidoreductase CO; 1.90A {Mus musculus} SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A

Probab=99.40  E-value=1.2e-12  Score=112.56  Aligned_cols=86  Identities=28%  Similarity=0.415  Sum_probs=74.6

Q ss_pred             ceeeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcC
Q psy1156         575 TFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIK  654 (671)
Q Consensus       575 ~~~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg  654 (671)
                      ..++|.|.+.. ..+|||.+.++.+..   .|++|..|.++|||+++|.|++||+|++|||++|.++++.+++.+++..+
T Consensus         4 ~~~~v~l~k~~-~~~lG~~i~~~~~~~---~g~~V~~V~~~spA~~aggl~~GD~I~~ing~~v~~~~~~~~~~~~~~~~   79 (90)
T 1qav_A            4 QRRRVTVRKAD-AGGLGISIKGGRENK---MPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTG   79 (90)
T ss_dssp             SCEEEEEECCT-TTCCCEEEEEEGGGT---EEEEEEEECTTSHHHHTTCCCTTEEEEEETTEECTTCCHHHHHHHHHTCC
T ss_pred             ccEEEEEEeCC-CCCcCEEEEcccCCC---CCEEEEEECCCCHHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence            35689998865 479999999876532   58999999999999999449999999999999999999999999999875


Q ss_pred             CCcEEEEEEeC
Q psy1156         655 NGSISLHICRR  665 (671)
Q Consensus       655 ~~~VtL~V~Rr  665 (671)
                       ..|.|+|.|.
T Consensus        80 -~~v~l~v~r~   89 (90)
T 1qav_A           80 -KEVVLEVKYM   89 (90)
T ss_dssp             -SEEEEEEEEC
T ss_pred             -CeEEEEEEEe
Confidence             7899999874

>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=99.40  E-value=1.3e-12  Score=117.86  Aligned_cols=92  Identities=27%  Similarity=0.450  Sum_probs=79.3

Q ss_pred             ceeeEEEeeCCCCCcccEEEecCCCCC------CCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHH
Q psy1156         575 TFHTIVFEKGPGKKGLGFTIVGGKDSP------RGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAIS  648 (671)
Q Consensus       575 ~~~~V~L~K~~g~~~LGfsL~Gg~ds~------~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~  648 (671)
                      ..+.|.|.+.. ..+|||+|.++.+..      ....|++|..|.++|||+++|+|++||+|++|||++|.++++.+++.
T Consensus        15 ~~~~v~l~k~~-~~~lG~~i~gg~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~   93 (117)
T 2ehr_A           15 PPRIVEIFREP-NVSLGISIVGGQTVIKRLKNGEELKGIFIKQVLEDSPAGKTNALKTGDKILEVSGVDLQNASHSEAVE   93 (117)
T ss_dssp             CCEEEEECCCS-SSCCCEEECCCCSCCCSSCCCSCCCSEEEEEECSSSTTTSSCSCCTTCEEEEESSCBCTTCCHHHHHH
T ss_pred             CCEEEEEEeCC-CCccCEEEeCCcccccccccCCCcCCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHH
Confidence            45688998875 479999999987642      12358999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCCcEEEEEEeCCCC
Q psy1156         649 LFKTIKNGSISLHICRRLKS  668 (671)
Q Consensus       649 lLK~sg~~~VtL~V~Rr~~~  668 (671)
                      +|+..+ ..|.|+|.|....
T Consensus        94 ~~~~~g-~~v~l~v~r~~~~  112 (117)
T 2ehr_A           94 AIKNAG-NPVVFIVQSLSST  112 (117)
T ss_dssp             HHHTSC-SSEEEEECCBSCC
T ss_pred             HHHcCC-CeEEEEEEECCCC
Confidence            999864 7899999887754

>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing isoform B; GOPC PDZ domain, structural protein; NMR {Homo sapiens}

Probab=99.40  E-value=1.1e-12  Score=116.04  Aligned_cols=89  Identities=30%  Similarity=0.504  Sum_probs=75.6

Q ss_pred             ceeeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcC
Q psy1156         575 TFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIK  654 (671)
Q Consensus       575 ~~~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg  654 (671)
                      ..+.|.|.+.. ..+|||+|.++.+..   .|++|..|.++|||+++|.|++||+|++|||++|.++++.+++.+|+..+
T Consensus         9 ~~~~v~l~~~~-~~~lG~~l~~g~~~~---~~~~V~~V~~~s~A~~a~gL~~GD~Il~Ing~~v~~~~~~~~~~~l~~~~   84 (103)
T 2dc2_A            9 PIRKVLLLKED-HEGLGISITGGKEHG---VPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQQR   84 (103)
T ss_dssp             CEEEEEEECCS-SSCCCEEEEEEGGGT---EEEEEEEECTTSHHHHHTCCCSSEEEEEETTEESTTSCHHHHHHHHHHCC
T ss_pred             CcEEEEEEeCC-CCccCEEEEeccCCC---CCEEEEEECCCCHHHHhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence            34678888765 479999999886542   48999999999999997339999999999999999999999999999985


Q ss_pred             CCcEEEEEEeCCCC
Q psy1156         655 NGSISLHICRRLKS  668 (671)
Q Consensus       655 ~~~VtL~V~Rr~~~  668 (671)
                       +.|.|+|.|....
T Consensus        85 -~~v~l~v~~~~~~   97 (103)
T 2dc2_A           85 -GEIEFEVVYVALE   97 (103)
T ss_dssp             -SEEEEEEEECC--
T ss_pred             -CcEEEEEEecCCc
Confidence             7999999987653

>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=99.40  E-value=1.6e-12  Score=118.74  Aligned_cols=88  Identities=36%  Similarity=0.600  Sum_probs=78.1

Q ss_pred             ceeeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcC
Q psy1156         575 TFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIK  654 (671)
Q Consensus       575 ~~~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg  654 (671)
                      ..+.|.|.+..  .+|||+|.++.+..  ..|++|..|.++|||+++|+|++||+|++|||++|.++++.+++.+++..+
T Consensus        25 ~~~~v~l~k~~--~glG~~l~~~~~~~--~~gv~V~~V~~~spA~~aG~L~~GD~Il~Ing~~v~~~~~~~~~~~~~~~~  100 (124)
T 2daz_A           25 ELHIIELEKDK--NGLGLSLAGNKDRS--RMSIFVVGINPEGPAAADGRMRIGDELLEINNQILYGRSHQNASAIIKTAP  100 (124)
T ss_dssp             EEEEEEEECCS--SCCCEEEECBSSTT--SCCEEEEEECTTSHHHHHTCCCTTCEECEESSCBCTTSCHHHHHHHHHHSC
T ss_pred             ceEEEEEEeCC--CccCEEEeccCCCC--cCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            55688998885  79999999886542  358999999999999999999999999999999999999999999999885


Q ss_pred             CCcEEEEEEeCCC
Q psy1156         655 NGSISLHICRRLK  667 (671)
Q Consensus       655 ~~~VtL~V~Rr~~  667 (671)
                       ..|.|+|.|+..
T Consensus       101 -~~v~l~v~R~~~  112 (124)
T 2daz_A          101 -SKVKLVFIRNED  112 (124)
T ss_dssp             -SEEEEEEEECTT
T ss_pred             -CeEEEEEEeCCC
Confidence             689999999764

>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3, human, structural genomics, structural GE consortium, SGC, signaling protein; 2.39A {Homo sapiens} SCOP: b.36.1.1

Probab=99.40  E-value=2.1e-12  Score=111.43  Aligned_cols=84  Identities=21%  Similarity=0.382  Sum_probs=72.6

Q ss_pred             ceeeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcC
Q psy1156         575 TFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIK  654 (671)
Q Consensus       575 ~~~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg  654 (671)
                      ..+.|+|.++.  .+|||.+.+.       .|++|..|.++|||+++| |++||+|++|||++|.++++.+++.+|+..+
T Consensus         3 ~~r~v~l~~~~--~g~G~~l~~~-------~~~~V~~V~~~spA~~aG-l~~GD~I~~vng~~v~~~~~~~~~~~l~~~~   72 (91)
T 2f5y_A            3 RYRQITIPRGK--DGFGFTICCD-------SPVRVQAVDSGGPAERAG-LQQLDTVLQLNERPVEHWKCVELAHEIRSCP   72 (91)
T ss_dssp             EEEEEEEECBT--TBTSEEEECS-------SSCEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHTCS
T ss_pred             ceEEEEEEeCC--CCccEEEecC-------CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            45688999886  7899999764       368999999999999999 9999999999999999999999999999864


Q ss_pred             CCcEEEEEEeCCCCC
Q psy1156         655 NGSISLHICRRLKSK  669 (671)
Q Consensus       655 ~~~VtL~V~Rr~~~~  669 (671)
                       +.|.|+|.|+.+..
T Consensus        73 -~~v~l~v~R~~~~~   86 (91)
T 2f5y_A           73 -SEIILLVWRMVPQV   86 (91)
T ss_dssp             -SEEEEEEEECC---
T ss_pred             -CeEEEEEEeCCCCC
Confidence             68999999987643

>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein; 1.80A {Drosophila melanogaster} SCOP: b.36.1.1

Probab=99.40  E-value=1.4e-12  Score=113.74  Aligned_cols=89  Identities=36%  Similarity=0.493  Sum_probs=76.4

Q ss_pred             eeeEEEeeCCCCCcccEEEecCCCCCC---CCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHh
Q psy1156         576 FHTIVFEKGPGKKGLGFTIVGGKDSPR---GAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKT  652 (671)
Q Consensus       576 ~~~V~L~K~~g~~~LGfsL~Gg~ds~~---g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~  652 (671)
                      .+.|+|.|.. ..+|||+|.++.+...   ...|++|..|.++|||+++|+|++||+|++|||+++.++++.+++.+|+.
T Consensus         6 ~~~v~l~k~~-~~glG~~i~~~~~~~~~~~~~~g~~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~   84 (98)
T 1ihj_A            6 IHMVTLDKTG-KKSFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKE   84 (98)
T ss_dssp             EEEEEEECTT-SSSCCEEEEEEEECCSSSCCEEEEEEEEECTTSHHHHHCSCCTTCEEEEETTEECTTCCHHHHHHHHHH
T ss_pred             EEEEEEEeCC-CCCcCEEEeccccCCccccCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHhc
Confidence            4678998854 4799999998865432   23589999999999999999999999999999999999999999999998


Q ss_pred             cCCCcEEEEEEeCC
Q psy1156         653 IKNGSISLHICRRL  666 (671)
Q Consensus       653 sg~~~VtL~V~Rr~  666 (671)
                      . ...|.|+|.|+.
T Consensus        85 ~-g~~v~l~v~R~g   97 (98)
T 1ihj_A           85 A-DFKIELEIQTFD   97 (98)
T ss_dssp             S-CSEEEEEEEEC-
T ss_pred             C-CCeEEEEEEeCC
Confidence            5 478999999874

>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP: b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A

Probab=99.40  E-value=1.3e-12  Score=112.30  Aligned_cols=77  Identities=22%  Similarity=0.359  Sum_probs=69.3

Q ss_pred             CeEEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhcC
Q psy1156         387 GQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSG  466 (671)
Q Consensus       387 ~~~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~~  466 (671)
                      +.++|+|.|. +.++|||++.+          | +|..|.+|+||+++| |++||+|++|||+++.+++|++++.+|+.+
T Consensus         4 ~~r~v~l~k~-~~g~~Gf~i~~----------g-~I~~v~~gspA~~aG-l~~GD~Il~VNG~~v~~~~~~evv~llr~~   70 (82)
T 1r6j_A            4 DPRTITMHKD-STGHVGFIFKN----------G-KITSIVKDSSAARNG-LLTEHNICEINGQNVIGLKDSQIADILSTS   70 (82)
T ss_dssp             CCEEEEEECC-TTSCCCEEEET----------T-EEEEECTTSHHHHHT-CCSSEEEEEETTEECTTCCHHHHHHHHHHS
T ss_pred             ceEEEEEEEC-CCCCeEEEEEC----------C-EEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHHhcC
Confidence            5689999985 46789999983          3 378999999999999 999999999999999999999999999988


Q ss_pred             CCeEEEEEEe
Q psy1156         467 PLNMDLLISR  476 (671)
Q Consensus       467 g~~V~L~V~R  476 (671)
                      +..|+|+|..
T Consensus        71 g~~V~L~v~p   80 (82)
T 1r6j_A           71 GTVVTITIMP   80 (82)
T ss_dssp             CSEEEEEEEE
T ss_pred             CCEEEEEEEe
Confidence            9999999864

>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}

Probab=99.40  E-value=1.6e-12  Score=120.54  Aligned_cols=91  Identities=20%  Similarity=0.379  Sum_probs=77.3

Q ss_pred             ceeeEEEeeCCCCCcccEEEecCCCCC---------CCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHH
Q psy1156         575 TFHTIVFEKGPGKKGLGFTIVGGKDSP---------RGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLE  645 (671)
Q Consensus       575 ~~~~V~L~K~~g~~~LGfsL~Gg~ds~---------~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheE  645 (671)
                      ..+.|+|.|.. ..+|||+|.++.+..         ....|++|..|.++|+|+++| |++||+|++|||++|.++++.+
T Consensus        27 ~~r~v~l~r~~-~~g~Gf~i~g~~~~~~~~~~~~~~~~~~gv~V~~V~~gspA~~aG-L~~GD~Il~Vng~~v~~~~~~~  104 (132)
T 3l4f_D           27 KEKTVLLQKKD-SEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAG-LRMGDFLIEVNGQNVVKVGHRQ  104 (132)
T ss_dssp             CCCEEEEECCT-TSCCCEEEEEECCSSCCSCCCCCTTSCCSEEEEEECTTSGGGGGT-CCTTCEEEEESSSBCTTSCHHH
T ss_pred             CCEEEEEEECC-CCcEeEEEeccCCCCccccccccccCCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHH
Confidence            44689998864 479999999987632         123489999999999999999 9999999999999999999999


Q ss_pred             HHHHHHhcCCCcEEEEEEeCCCC
Q psy1156         646 AISLFKTIKNGSISLHICRRLKS  668 (671)
Q Consensus       646 AV~lLK~sg~~~VtL~V~Rr~~~  668 (671)
                      ++.+|+..+ ..|.|+|.|....
T Consensus       105 ~~~~l~~~g-~~v~l~v~~~~~~  126 (132)
T 3l4f_D          105 VVNMIRQGG-NTLMVKVVMVTRH  126 (132)
T ss_dssp             HHHHHHHTT-TEEEEEEECCCC-
T ss_pred             HHHHHHcCC-CEEEEEEEECCCC
Confidence            999999875 7899999887643

>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog, phosphorylation, signaling PR LIM domain, PDZ domain; 1.5A {Homo sapiens}

Probab=99.40  E-value=1.6e-12  Score=111.06  Aligned_cols=83  Identities=34%  Similarity=0.561  Sum_probs=72.2

Q ss_pred             eeeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcCC
Q psy1156         576 FHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKN  655 (671)
Q Consensus       576 ~~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg~  655 (671)
                      ...|++ ++.  .+|||++.++.+..   .|++|..|.++|||+++| |++||+|++|||+++.++++.+++.+++.. .
T Consensus         4 ~~~v~l-~~~--~~~G~~l~~g~~~~---~~~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~~~~~-g   75 (88)
T 2uzc_A            4 NYSVSL-VGP--APWGFRLQGGKDFN---MPLTISSLKDGGKAAQAN-VRIGDVVLSIDGINAQGMTHLEAQNKIKGC-T   75 (88)
T ss_dssp             EEEEEE-ESS--SCCCEEEEEEGGGT---EEEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHHTC-C
T ss_pred             EEEEEE-cCC--CcccEEEECcCCCC---CCeEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhC-C
Confidence            456777 443  78999999876643   589999999999999999 999999999999999999999999999877 4


Q ss_pred             CcEEEEEEeCC
Q psy1156         656 GSISLHICRRL  666 (671)
Q Consensus       656 ~~VtL~V~Rr~  666 (671)
                      ..|.|+|.|+.
T Consensus        76 ~~v~l~v~R~g   86 (88)
T 2uzc_A           76 GSLNMTLQRES   86 (88)
T ss_dssp             SEEEEEEECCC
T ss_pred             CeEEEEEEeCC
Confidence            78999998864

>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.39  E-value=5.2e-13  Score=119.42  Aligned_cols=93  Identities=31%  Similarity=0.572  Sum_probs=79.6

Q ss_pred             ceeeEEEeeCCCCCcccEEEecCCCCC------CCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHH
Q psy1156         575 TFHTIVFEKGPGKKGLGFTIVGGKDSP------RGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAIS  648 (671)
Q Consensus       575 ~~~~V~L~K~~g~~~LGfsL~Gg~ds~------~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~  648 (671)
                      ..+.|.|.+.. ..+|||.|.++.+..      ....|++|..|.++|+|+++|+|++||+|++|||++|.++++.+++.
T Consensus         9 ~~~~v~l~k~~-~~~lG~~i~gg~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~   87 (111)
T 1uju_A            9 GLRELCIQKAP-GERLGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRLRVGLRLLEVNQQSLLGLTHGEAVQ   87 (111)
T ss_dssp             SSSCEEEECCT-TCCCCEEEECCSSSSCSCSSCTTCCCCEEEEECTTSHHHHHSSCCTTCBCCBBSSCBCTTSCHHHHHH
T ss_pred             ccEEEEEEECC-CCccCEEEECCccccccccccCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHH
Confidence            35678998876 479999999987532      12458999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCCcEEEEEEeCCCCC
Q psy1156         649 LFKTIKNGSISLHICRRLKSK  669 (671)
Q Consensus       649 lLK~sg~~~VtL~V~Rr~~~~  669 (671)
                      +|+..+ ..|.|+|.|+....
T Consensus        88 ~l~~~g-~~v~l~v~r~~~~~  107 (111)
T 1uju_A           88 LLRSVG-DTLTVLVCDGFESG  107 (111)
T ss_dssp             HHSSCS-SEEEECCCCCCCCS
T ss_pred             HHHcCC-CeEEEEEEECCCCC
Confidence            998864 78999999887543

>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; transferase, STRU genomics, structural genomics consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo sapiens}

Probab=99.39  E-value=1.8e-12  Score=116.39  Aligned_cols=86  Identities=33%  Similarity=0.665  Sum_probs=75.7

Q ss_pred             ceeeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcC
Q psy1156         575 TFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIK  654 (671)
Q Consensus       575 ~~~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg  654 (671)
                      ..+.|.|.+..  .+|||+|.++.+..   .|++|..|.++|||+++|+|++||+|++|||++|.++++.+++.+++..+
T Consensus        24 ~~~~v~l~~~~--~glG~~l~~~~~~~---~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~g   98 (112)
T 2r4h_A           24 DFYTVELERGA--KGFGFSLRGGREYN---MDLYVLRLAEDGPAERSGKMRIGDEILEINGETTKNMKHSRAIELIKNGG   98 (112)
T ss_dssp             CEEEEEEECBT--TBTSEEEEECGGGT---CCEEEEEECTTSHHHHTTCCCTTCEEEEETTEECTTCCHHHHHHHHHTTT
T ss_pred             ceEEEEEEcCC--CccCEEEeccccCC---CCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            56788998876  78999999876432   58999999999999999999999999999999999999999999998864


Q ss_pred             CCcEEEEEEeCC
Q psy1156         655 NGSISLHICRRL  666 (671)
Q Consensus       655 ~~~VtL~V~Rr~  666 (671)
                       ..|.|+|.|+.
T Consensus        99 -~~v~l~v~R~~  109 (112)
T 2r4h_A           99 -RRVRLFLKRGE  109 (112)
T ss_dssp             -TEEEEEEECCE
T ss_pred             -CeEEEEEEeCC
Confidence             78999998864

>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.7A {Homo sapiens} PDB: 2iwp_A

Probab=99.39  E-value=1e-12  Score=119.95  Aligned_cols=94  Identities=23%  Similarity=0.340  Sum_probs=76.8

Q ss_pred             CCCeEEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHh
Q psy1156         385 QEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIIS  464 (671)
Q Consensus       385 ~~~~~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~  464 (671)
                      ..+++.|+|.|. +.++|||+|.++.+...+. .|++|..|.++|||+++|.|++||+|++|||++|.++++.+++.+++
T Consensus        22 ~~~~~~v~l~k~-~~~~lGf~i~gg~~~~~~~-~~~~V~~V~~~spA~~aggL~~GD~Il~VnG~~v~~~~~~~~~~~l~   99 (120)
T 2iwo_A           22 SMGLRTVEMKKG-PTDSLGISIAGGVGSPLGD-VPIFIAMMHPTGVAAQTQKLRVGDRIVTICGTSTEGMTHTQAVNLLK   99 (120)
T ss_dssp             ---CEEEEEEC-----CCCEEEEEEEEETTEE-EEEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCBHHHHHHHHH
T ss_pred             CCCcEEEEEEcC-CCCCCCEEEecccCCCCCC-CCEEEEEECCCCHHHHhCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            446789999885 3579999999976533222 58999999999999999449999999999999999999999999999


Q ss_pred             cCCCeEEEEEEeCCcc
Q psy1156         465 SGPLNMDLLISRTSLK  480 (671)
Q Consensus       465 ~~g~~V~L~V~R~~~~  480 (671)
                      ..+..|.|+|.|.+..
T Consensus       100 ~~~~~v~l~v~r~g~~  115 (120)
T 2iwo_A          100 NASGSIEMQVVAGGDV  115 (120)
T ss_dssp             HCCSEEEEEEECCTTS
T ss_pred             cCCCeEEEEEEECCcc
Confidence            8888999999997653

>2koj_A Partitioning defective 3 homolog; PDZ domain, structural genomics, alternative splicing, cell cycle, cell division, cell junction, coiled coil; NMR {Mus musculus} PDB: 2ogp_A

Probab=99.39  E-value=4.2e-12  Score=113.22  Aligned_cols=92  Identities=35%  Similarity=0.606  Sum_probs=78.2

Q ss_pred             ceeeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcC
Q psy1156         575 TFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIK  654 (671)
Q Consensus       575 ~~~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg  654 (671)
                      ..+.+.+.+..  .+|||.|.++.+...+..|++|..|.++|||+++|+|++||+|++|||++|.++++.+++.+|+..+
T Consensus        11 ~~~~~~l~~~~--~glG~~~~~~~~~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~   88 (111)
T 2koj_A           11 KRLNIQLKKGT--EGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLAGKSQEEVVSLLRSTK   88 (111)
T ss_dssp             EEEEEEEECBT--TBTCEEEEECSCSSSSSSCEEEEEECSSSHHHHHCSSCTTCEEEEETTEECTTSCHHHHHHHHHHCC
T ss_pred             cEEEEEEEECC--CccCEEEEeccCCCCCCcCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence            34567777765  7999999987655444568999999999999999999999999999999999999999999999862


Q ss_pred             -CCcEEEEEEeCCCC
Q psy1156         655 -NGSISLHICRRLKS  668 (671)
Q Consensus       655 -~~~VtL~V~Rr~~~  668 (671)
                       ...|.|+|.|+...
T Consensus        89 ~g~~v~l~v~R~~~~  103 (111)
T 2koj_A           89 MEGTVSLLVFRQEEA  103 (111)
T ss_dssp             CSSEEEEEEEECCCC
T ss_pred             CCCeEEEEEEeCCCC
Confidence             46899999987653

>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere, structural protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 1wjl_A

Probab=99.39  E-value=1.6e-12  Score=110.24  Aligned_cols=82  Identities=30%  Similarity=0.468  Sum_probs=70.6

Q ss_pred             eeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcCCC
Q psy1156         577 HTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKNG  656 (671)
Q Consensus       577 ~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg~~  656 (671)
                      ..|+|. +  ..+|||.+.++.+..   .|++|..|.++|||+++| |++||+|++|||+++.++++.+++.+++..+ +
T Consensus         3 ~~v~l~-~--~~~~G~~l~gg~~~~---~~v~V~~V~~~spA~~aG-l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~-~   74 (85)
T 1rgw_A            3 YSVTLT-G--PGPWGFRLQGGKDFN---MPLTISRITPGSKAAQSQ-LSQGDLVVAIDGVNTDTMTHLEAQNKIKSAS-Y   74 (85)
T ss_dssp             EEEEEC-C--SSCCCEEECCCGGGT---SCCBEEEECTTSHHHHSS-CCCCSBEEEETTEECTTCCHHHHHHHHTTCS-S
T ss_pred             EEEEEe-C--CCccCEEEEeccCCC---CCeEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCcCHHHHHHHHHcCC-C
Confidence            456773 3  278999999876543   479999999999999999 9999999999999999999999999998775 6


Q ss_pred             cEEEEEEeCC
Q psy1156         657 SISLHICRRL  666 (671)
Q Consensus       657 ~VtL~V~Rr~  666 (671)
                      .|.|+|.|+.
T Consensus        75 ~v~l~v~R~~   84 (85)
T 1rgw_A           75 NLSLTLQKSK   84 (85)
T ss_dssp             CEEEEEESCC
T ss_pred             eEEEEEEeCC
Confidence            7999998864

>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics, structural genomics consort metal binding protein; 1.70A {Homo sapiens} PDB: 3pdv_A

Probab=99.39  E-value=2.1e-12  Score=110.20  Aligned_cols=83  Identities=28%  Similarity=0.477  Sum_probs=71.9

Q ss_pred             eEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcCCCc
Q psy1156         578 TIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKNGS  657 (671)
Q Consensus       578 ~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg~~~  657 (671)
                      .+++.+.. ..+|||.+.++.+..   .|++|..|.++|||+++| |++||+|++|||+++.++++.+++.+|+..+ ..
T Consensus         3 ~~~v~~~~-~~~lG~~l~~~~~~~---~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~-~~   76 (87)
T 2pa1_A            3 ALTVDVAG-PAPWGFRITGGRDFH---TPIMVTKVAERGKAKDAD-LRPGDIIVAINGESAEGMLHAEAQSKIRQSP-SP   76 (87)
T ss_dssp             EEEEEECS-SSCCSEEEEEEGGGT---EEEEEEEECSSSHHHHTT-CCTTCEEEEETTEESTTCCHHHHHHHHHTCC-SS
T ss_pred             EEEEEECC-CCccCEEEecccCCC---CCEEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCC-Ce
Confidence            34444443 479999999876542   589999999999999999 9999999999999999999999999999986 89


Q ss_pred             EEEEEEeCC
Q psy1156         658 ISLHICRRL  666 (671)
Q Consensus       658 VtL~V~Rr~  666 (671)
                      |.|+|.|+.
T Consensus        77 v~l~v~R~~   85 (87)
T 2pa1_A           77 LRLQLDRIT   85 (87)
T ss_dssp             EEEEEEECC
T ss_pred             EEEEEEecC
Confidence            999999975

>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A 1vj6_A 1gm1_A 1ozi_A

Probab=99.38  E-value=3.8e-12  Score=110.44  Aligned_cols=91  Identities=29%  Similarity=0.431  Sum_probs=79.7

Q ss_pred             CCeEEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhc
Q psy1156         386 EGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISS  465 (671)
Q Consensus       386 ~~~~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~  465 (671)
                      ...+.|.|.+..  .+|||++.++.+..... .|++|..|.++|||+++|+|++||+|++|||+.+.++++.++..+++.
T Consensus         4 g~~~~v~l~k~~--~~lG~~i~~g~~~~~~~-~g~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~   80 (96)
T 1d5g_A            4 GDIFEVELAKND--NSLGISVTGGVNTSVRH-GGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRN   80 (96)
T ss_dssp             TCEEEEEEECSS--SSCCEEEECCSSSCSSS-SCCEEEEECTTSHHHHTTCCCTTCEEEEETTEECTTCCHHHHHHHHHS
T ss_pred             CCEEEEEEEeCC--CCCCEEEECCCCCCCCc-CCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc
Confidence            467889998854  89999999876543333 689999999999999999999999999999999999999999999998


Q ss_pred             CCCeEEEEEEeCCc
Q psy1156         466 GPLNMDLLISRTSL  479 (671)
Q Consensus       466 ~g~~V~L~V~R~~~  479 (671)
                      .+..+.|+|.|...
T Consensus        81 ~g~~v~l~v~R~~~   94 (96)
T 1d5g_A           81 TGQVVHLLLEKGQS   94 (96)
T ss_dssp             CCSEEEEEEECCSC
T ss_pred             CCCeEEEEEEcCCC
Confidence            88899999988653

>4e34_A Golgi-associated PDZ and coiled-coil motif-contai protein; PDZ-peptide complex, protein transport-inhibitor complex; 1.40A {Homo sapiens} PDB: 4e35_A

Probab=99.38  E-value=1.7e-12  Score=110.69  Aligned_cols=83  Identities=33%  Similarity=0.564  Sum_probs=72.1

Q ss_pred             eeeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHh-CCCCCCCEEEEECCeecCCCCHHHHHHHHHhcC
Q psy1156         576 FHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAED-GRLKEGDEILAINGQVCHDLTHLEAISLFKTIK  654 (671)
Q Consensus       576 ~~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAara-GrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg  654 (671)
                      .+.|.|.+.. ..+|||.+.++.+..   .|++|..|.++|||+++ | |++||+|++|||+++.++++.+++.+++..+
T Consensus         3 ~~~v~l~~~~-~~~lG~~i~~~~~~~---~~~~V~~V~~gspA~~~ag-l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~   77 (87)
T 4e34_A            3 IRKVLLLKED-HEGLGISITGGKEHG---VPILISEIHPGQPADRCGG-LHVGDAILAVNGVNLRDTKHKEAVTILSQQR   77 (87)
T ss_dssp             CEEEEEECCT-TBCCCEEEEEEGGGT---EEEEEEEECTTSHHHHHSC-CCTTEEEEEETTEECTTCCHHHHHHHHHHCC
T ss_pred             EEEEEEEECC-CCcccEEEEccCCCC---CCEEEEEECCCCHHHhcCC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            4678998876 479999999876542   57999999999999994 7 9999999999999999999999999999875


Q ss_pred             CCcEEEEEEe
Q psy1156         655 NGSISLHICR  664 (671)
Q Consensus       655 ~~~VtL~V~R  664 (671)
                       +.+.|+|.+
T Consensus        78 -~~v~l~v~~   86 (87)
T 4e34_A           78 -GEIEFEVVY   86 (87)
T ss_dssp             -SEEEEEEEE
T ss_pred             -CeEEEEEEE
Confidence             689998864

>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.38  E-value=5.9e-12  Score=111.38  Aligned_cols=87  Identities=34%  Similarity=0.580  Sum_probs=76.2

Q ss_pred             ceeeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcC
Q psy1156         575 TFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIK  654 (671)
Q Consensus       575 ~~~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg  654 (671)
                      ..+.|.|.+.. ..+|||.+.++.+..   .|++|..|.++|||+++| |++||+|++|||++|.++++.+++.+|+. +
T Consensus        15 ~~~~v~l~k~~-~~~lG~~~~~~~~~~---~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~l~~-~   88 (104)
T 1wi2_A           15 LPRIVTLKKPP-GAQLGFNIRGGKASQ---LGIFISKVIPDSDAHRAG-LQEGDQVLAVNDVDFQDIEHSKAVEILKT-A   88 (104)
T ss_dssp             CCEEEEECCCT-TCCCSEEEECCSSSC---CCCEEEEECTTSHHHHHT-CCTTCEEEEETTEECSSCCHHHHHHHHHH-S
T ss_pred             CCEEEEEEeCC-CCCccEEEEcccCCC---CCEEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhC-C
Confidence            34689999886 379999999876543   589999999999999999 99999999999999999999999999998 3


Q ss_pred             CCcEEEEEEeCCCC
Q psy1156         655 NGSISLHICRRLKS  668 (671)
Q Consensus       655 ~~~VtL~V~Rr~~~  668 (671)
                       ..|.|+|.|....
T Consensus        89 -~~v~l~v~r~~~~  101 (104)
T 1wi2_A           89 -REISMRVRFFSGP  101 (104)
T ss_dssp             -SSEEEEEECCCCS
T ss_pred             -CEEEEEEEECCCC
Confidence             7899999887654

>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm, phosphoprotein, transport protein, CAsp; 2.60A {Homo sapiens} PDB: 2eej_A

Probab=99.38  E-value=9.9e-13  Score=113.38  Aligned_cols=85  Identities=24%  Similarity=0.393  Sum_probs=72.6

Q ss_pred             ceeeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcC
Q psy1156         575 TFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIK  654 (671)
Q Consensus       575 ~~~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg  654 (671)
                      ..+.|+|.|..  .+|||.+.+..+.    .|++|..|.++|||+++| |++||+|++|||+++.++++.+++.+|+.. 
T Consensus         3 ~pr~v~l~k~~--~~~G~~l~~~~~~----~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~-   74 (91)
T 2vsp_A            3 KPKLCRLAKGE--NGYGFHLNAIRGL----PGSFIKEVQKGGPADLAG-LEDEDVIIEVNGVNVLDEPYEKVVDRIQSS-   74 (91)
T ss_dssp             CEEEEEEECBT--TBTSCCCBCCTTC----SCCBC-CCCTTSHHHHTT-CCTTCEEEEETTEECTTSCHHHHHHHHTTS-
T ss_pred             CcEEEEEEeCC--CcccEEEEeccCC----CCeEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcC-
Confidence            34689999987  6899999876543    489999999999999999 999999999999999999999999999987 


Q ss_pred             CCcEEEEEEeCCC
Q psy1156         655 NGSISLHICRRLK  667 (671)
Q Consensus       655 ~~~VtL~V~Rr~~  667 (671)
                      ...|.|+|.|+..
T Consensus        75 g~~v~l~v~r~~~   87 (91)
T 2vsp_A           75 GKNVTLLVCGKKA   87 (91)
T ss_dssp             CSEEEEEEEC---
T ss_pred             CCEEEEEEEeCCc
Confidence            4789999998764

>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.38  E-value=2.2e-12  Score=113.80  Aligned_cols=92  Identities=30%  Similarity=0.534  Sum_probs=78.4

Q ss_pred             ceeeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcC
Q psy1156         575 TFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIK  654 (671)
Q Consensus       575 ~~~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg  654 (671)
                      ..+.|.|.+..  .+|||.|.++.+.. +..|++|..|.+++||+++|+|++||+|++|||++|.++++.+++.+++.. 
T Consensus        11 ~~~~v~l~~~~--~g~G~~l~~~~~~~-~~~~v~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~-   86 (104)
T 2djt_A           11 GHFSVELVRGY--AGFGLTLGGGRDVA-GDTPLAVRGLLKDGPAQRCGRLEVGDLVLHINGESTQGLTHAQAVERIRAG-   86 (104)
T ss_dssp             CCEEEEEECCS--SSCCEEEECCEETT-EECCCEEEEECTTCHHHHHCSCCTTCBEEEETTEECTTCCHHHHHHHHHHT-
T ss_pred             ceEEEEEEeCC--CCccEEEEeccCCC-CCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-
Confidence            45688888876  79999999875431 124899999999999999999999999999999999999999999999885 


Q ss_pred             CCcEEEEEEeCCCCCC
Q psy1156         655 NGSISLHICRRLKSKK  670 (671)
Q Consensus       655 ~~~VtL~V~Rr~~~~~  670 (671)
                      ...|.|+|.|+....+
T Consensus        87 g~~v~l~v~R~g~~~~  102 (104)
T 2djt_A           87 GPQLHLVIRRPLSGPS  102 (104)
T ss_dssp             CSEEEEEECCCCCCCC
T ss_pred             CCeEEEEEEECCCCCC
Confidence            4789999998876543

>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase, protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A

Probab=99.38  E-value=3.3e-12  Score=116.61  Aligned_cols=87  Identities=26%  Similarity=0.471  Sum_probs=76.6

Q ss_pred             ceeeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcC
Q psy1156         575 TFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIK  654 (671)
Q Consensus       575 ~~~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg  654 (671)
                      ..+.|.|.+.. ..+|||++.++.+..   .|++|..|.++|||+++|+|++||+|++|||++|.+++|.+++.+|+..+
T Consensus        19 ~~~~v~l~k~~-~~~lG~~i~gg~~~~---~~~~V~~v~~gspA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~   94 (125)
T 3hpk_A           19 VPGKVTLQKDA-QNLIGISIGGGAQYC---PCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVK   94 (125)
T ss_dssp             EEEEEEEECCT-TSCCCEEEEECSSCC---SSEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHSC
T ss_pred             CCeEEEEEeCC-CCCcCEEEeccCCCC---CCEEEEEeCCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            45678888876 478999999987643   58999999999999999999999999999999999999999999999975


Q ss_pred             CCcEEEEEEeCC
Q psy1156         655 NGSISLHICRRL  666 (671)
Q Consensus       655 ~~~VtL~V~Rr~  666 (671)
                       +.|.|+|.|..
T Consensus        95 -~~v~l~v~r~~  105 (125)
T 3hpk_A           95 -GEVTIHYNKLQ  105 (125)
T ss_dssp             -SEEEEEEEEEC
T ss_pred             -CeEEEEEEECC
Confidence             67999998843

>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain, RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2css_A 1zub_A

Probab=99.38  E-value=3.1e-12  Score=118.42  Aligned_cols=82  Identities=28%  Similarity=0.430  Sum_probs=72.2

Q ss_pred             CCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhcC--CCeEEEEE
Q psy1156         397 DFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSG--PLNMDLLI  474 (671)
Q Consensus       397 ~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~~--g~~V~L~V  474 (671)
                      ...++|||+|.++.....+. .|+||..|.++|||+++|+|++||+|++|||+.|.++++.+++.+|+..  +..|.|+|
T Consensus        45 ~~~~~lG~~i~gg~~~~~~~-~gv~V~~V~~gspA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~~g~~v~l~v  123 (131)
T 1wfg_A           45 DSGAMLGLKVVGGKMTESGR-LCAFITKVKKGSLADTVGHLRPGDEVLEWNGRLLQGATFEEVYNIILESKPEPQVELVV  123 (131)
T ss_dssp             CSCTTTTEEEEEEEECSSSC-EEEEEEEECTTSHHHHTSCCCTTCEEEEETTEECTTCCHHHHHHHHHHTSSSSEEEEEE
T ss_pred             CCCCCCCEEEecCccCCCCC-CCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhcCCCCEEEEEE
Confidence            35789999999887654334 6899999999999999999999999999999999999999999999865  48899999


Q ss_pred             EeCCc
Q psy1156         475 SRTSL  479 (671)
Q Consensus       475 ~R~~~  479 (671)
                      .|.+.
T Consensus       124 ~R~g~  128 (131)
T 1wfg_A          124 SRSGP  128 (131)
T ss_dssp             EEECS
T ss_pred             EcCCC
Confidence            98654

>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=99.38  E-value=4.9e-12  Score=112.90  Aligned_cols=86  Identities=30%  Similarity=0.568  Sum_probs=76.0

Q ss_pred             ceeeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcC
Q psy1156         575 TFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIK  654 (671)
Q Consensus       575 ~~~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg  654 (671)
                      ..+.|.|.+..  .+|||.|.++.+     .|++|..|.++|+|+++|+|++||+|++|||++|.++++.+++.+|+..+
T Consensus        15 ~~~~v~l~~~~--~~lG~~l~~~~~-----~g~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~g   87 (111)
T 2dlu_A           15 HVEEVELINDG--SGLGFGIVGGKT-----SGVVVRTIVPGGLADRDGRLQTGDHILKIGGTNVQGMTSEQVAQVLRNCG   87 (111)
T ss_dssp             EEEEEEEECCS--SCCCEEEECCSS-----SSBEEEEECTTSSHHHHTCCCSSCEEEEESSCCCTTSCHHHHHHHHHHHC
T ss_pred             ceEEEEEEeCC--CccCEEEeccCC-----CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence            45678888865  789999997754     38999999999999999999999999999999999999999999999874


Q ss_pred             CCcEEEEEEeCCCC
Q psy1156         655 NGSISLHICRRLKS  668 (671)
Q Consensus       655 ~~~VtL~V~Rr~~~  668 (671)
                       ..|.|+|.|+...
T Consensus        88 -~~v~l~v~R~~~~  100 (111)
T 2dlu_A           88 -NSVRMLVARDPAG  100 (111)
T ss_dssp             -SEEEEEEEESCTT
T ss_pred             -CeEEEEEEeCCCC
Confidence             7899999987654

>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural genomics, structural GEN consortium, SGC, structural protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1 PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A

Probab=99.38  E-value=4.6e-12  Score=109.38  Aligned_cols=90  Identities=21%  Similarity=0.323  Sum_probs=77.4

Q ss_pred             CeEEEEEEeCCCCCcccEEEeeecCCCCC-CcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhc
Q psy1156         387 GQTMVRVNRRDFNEELGIYIAKIKNSSEG-NIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISS  465 (671)
Q Consensus       387 ~~~~V~L~k~~~~~~LGfsI~gg~~~~~g-~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~  465 (671)
                      .++.|+|.+..  .+|||+|.++.+.... ...|++|..|.++|||+++|.|++||+|++|||+.+.++++.++..+++.
T Consensus         3 ~~~~v~l~k~~--~g~G~~i~gg~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~   80 (94)
T 2fe5_A            3 TIMEVNLLKGP--KGLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKN   80 (94)
T ss_dssp             CEEEEEEECCT--TCSCEEEEECBTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCBHHHHHHHHHT
T ss_pred             EEEEEEEEECC--CCCCEEEEcccCCCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc
Confidence            56889998864  7899999987654311 12689999999999999999999999999999999999999999999987


Q ss_pred             CCCeEEEEEEeCC
Q psy1156         466 GPLNMDLLISRTS  478 (671)
Q Consensus       466 ~g~~V~L~V~R~~  478 (671)
                      .+..+.|+|.|.+
T Consensus        81 ~~~~v~l~v~R~g   93 (94)
T 2fe5_A           81 TSDMVYLKVAKPG   93 (94)
T ss_dssp             CCSEEEEEEECCC
T ss_pred             CCCeEEEEEEcCC
Confidence            7789999998864

>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics, PDZ domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.36.1.1 PDB: 2koh_A 2k1z_A 2k20_A

Probab=99.38  E-value=9.7e-13  Score=121.10  Aligned_cols=93  Identities=33%  Similarity=0.532  Sum_probs=75.9

Q ss_pred             eeeEEEeeCCCCCcccEEEecCCCCCC-CCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhc-
Q psy1156         576 FHTIVFEKGPGKKGLGFTIVGGKDSPR-GAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTI-  653 (671)
Q Consensus       576 ~~~V~L~K~~g~~~LGfsL~Gg~ds~~-g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~s-  653 (671)
                      ...|.|.+.. ..+|||+|.++.+... +..|+||..|.++|||+++|+|++||+|++|||++|.+++|.+++.+|+.+ 
T Consensus        26 ~~~v~l~k~~-~~glG~~i~~~~~~~~~~~~gi~V~~V~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~  104 (127)
T 1wg6_A           26 TLEIPLNDSG-SAGLGVSLKGNKSRETGTDLGIFIKSIIHGGAAFKDGRLRMNDQLIAVNGETLLGKSNHEAMETLRRSM  104 (127)
T ss_dssp             EEEEECSSST-TTCCCCEEEEEEETTTTEEEEEEEEECCSSSSTHHHHTSCSCCBEEEETTEESTTSCHHHHHHHHHHHH
T ss_pred             EEEEEEeeCC-CCccCeEEecccCCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHHhh
Confidence            3445555333 4899999998765321 235899999999999999999999999999999999999999999999975 


Q ss_pred             -----CCCcEEEEEEeCCCCC
Q psy1156         654 -----KNGSISLHICRRLKSK  669 (671)
Q Consensus       654 -----g~~~VtL~V~Rr~~~~  669 (671)
                           ....|.|+|.|+....
T Consensus       105 ~~~g~~~~~v~l~v~R~~~~~  125 (127)
T 1wg6_A          105 SMEGNIRGMIQLVILRRSGPS  125 (127)
T ss_dssp             HHHHHHTCEEEEEEEECSCSS
T ss_pred             ccccCCCCEEEEEEEeCCCCC
Confidence                 1378999999987543

>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A {Homo sapiens}

Probab=99.38  E-value=3.4e-12  Score=110.94  Aligned_cols=89  Identities=26%  Similarity=0.438  Sum_probs=76.4

Q ss_pred             ceeeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcC
Q psy1156         575 TFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIK  654 (671)
Q Consensus       575 ~~~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg  654 (671)
                      ..+.|.|.++.  .+|||.+.+..+. .+..|++|..|.++|||+++| |++||+|++|||+++.++++.+++.+|+.. 
T Consensus         3 ~~r~v~l~k~~--~~~G~~l~~~~~~-~~~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~-   77 (96)
T 2v90_A            3 KPRCLHLEKGP--QGFGFLLREEKGL-DGRPGQFLWEVDPGLPAKKAG-MQAGDRLVAVAGESVEGLGHEETVSRIQGQ-   77 (96)
T ss_dssp             CCEEEEEECBT--TBSCEEEEEEECT-TSCEEEEEEEECTTSHHHHTT-CCTTEEEEEETTEECTTCCHHHHHHHHHTT-
T ss_pred             CCEEEEEEeCC--CcccEEEEeccCC-CCCCCeEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcC-
Confidence            34689999986  6999999874332 223589999999999999999 999999999999999999999999999986 


Q ss_pred             CCcEEEEEEeCCCC
Q psy1156         655 NGSISLHICRRLKS  668 (671)
Q Consensus       655 ~~~VtL~V~Rr~~~  668 (671)
                      ...|.|+|.|+...
T Consensus        78 g~~v~l~v~r~~~~   91 (96)
T 2v90_A           78 GSCVSLTVVDPEAD   91 (96)
T ss_dssp             TTEEEEEEECCCTT
T ss_pred             CCEEEEEEECCCCc
Confidence            47899999997653

>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural genomics consortium, SGC; 1.11A {Homo sapiens}

Probab=99.37  E-value=2.3e-12  Score=110.48  Aligned_cols=84  Identities=31%  Similarity=0.508  Sum_probs=71.8

Q ss_pred             eeeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcCC
Q psy1156         576 FHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKN  655 (671)
Q Consensus       576 ~~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg~  655 (671)
                      ...|++..   ..+|||.|.++.+..   .|++|..|.++|||+++| |++||+|++|||+++.++++.+++.+++..+ 
T Consensus         4 ~~~v~~~~---~~~~G~~l~gg~~~~---~~v~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~~~~~g-   75 (89)
T 2q3g_A            4 SFKVVLEG---PAPWGFRLQGGKDFN---VPLSISRLTPGGKAAQAG-VAVGDWVLSIDGENAGSLTHIEAQNKIRACG-   75 (89)
T ss_dssp             EEEEEEES---SSCCCEEEEEEGGGT---EEEEEEEECTTSHHHHTT-CCTTCEEEEETTEEGGGCCHHHHHHHHHTCT-
T ss_pred             EEEEEEcC---CCcccEEEECcCCCC---CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCC-
Confidence            34566642   378999999876542   589999999999999999 9999999999999999999999999998874 


Q ss_pred             CcEEEEEEeCCC
Q psy1156         656 GSISLHICRRLK  667 (671)
Q Consensus       656 ~~VtL~V~Rr~~  667 (671)
                      ..|.|+|.|+..
T Consensus        76 ~~v~l~v~R~~~   87 (89)
T 2q3g_A           76 ERLSLGLSRAIT   87 (89)
T ss_dssp             TEEEEEEEEECC
T ss_pred             CEEEEEEEeCCC
Confidence            789999988764

>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.37  E-value=9.4e-12  Score=110.91  Aligned_cols=91  Identities=29%  Similarity=0.514  Sum_probs=77.6

Q ss_pred             ceeeEEEeeCCCCCcccEEEecCCCCCC---CCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHH
Q psy1156         575 TFHTIVFEKGPGKKGLGFTIVGGKDSPR---GAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFK  651 (671)
Q Consensus       575 ~~~~V~L~K~~g~~~LGfsL~Gg~ds~~---g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK  651 (671)
                      ..+.+.+.+..  .+|||.|.++.+...   ...|++|..|.++|||+++| |++||+|++|||++|.++++.+++..++
T Consensus        15 ~~~~~~l~~~~--~glG~~i~~g~~~~~~~~~~~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~~~   91 (110)
T 1x5q_A           15 EELTLTILRQT--GGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAG-VRVGDKLLEVNGVALQGAEHHEAVEALR   91 (110)
T ss_dssp             EEEEEEEECSS--SSCSEEEEECTTSCCSSTTCCSEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHH
T ss_pred             ceEEEEEecCC--CeeeEEEEccccCCccccCCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCcCHHHHHHHhh
Confidence            45677887774  899999998876432   34689999999999999999 9999999999999999999999999988


Q ss_pred             hcCCCcEEEEEEeCCCCC
Q psy1156         652 TIKNGSISLHICRRLKSK  669 (671)
Q Consensus       652 ~sg~~~VtL~V~Rr~~~~  669 (671)
                      .. ...|.|+|.|+.+..
T Consensus        92 ~~-g~~v~l~v~R~g~~~  108 (110)
T 1x5q_A           92 GA-GTAVQMRVWRESGPS  108 (110)
T ss_dssp             SC-CSEEEEEEEECSSCC
T ss_pred             CC-CCeEEEEEEECCccC
Confidence            75 478999999987643

>2ego_A General receptor for phosphoinositides 1- associated scaffold protein; PDZ domain, ligand-free, protein binding; 1.80A {Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A

Probab=99.37  E-value=3.6e-12  Score=111.04  Aligned_cols=88  Identities=24%  Similarity=0.403  Sum_probs=73.2

Q ss_pred             ceeeEEEeeCCCCCcccEEEec-CCC---CCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHH
Q psy1156         575 TFHTIVFEKGPGKKGLGFTIVG-GKD---SPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLF  650 (671)
Q Consensus       575 ~~~~V~L~K~~g~~~LGfsL~G-g~d---s~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lL  650 (671)
                      ..+.|.|.|.+ ..+|||+|.+ +..   ......|++|..|.++|||+++| |++||+|++|||+++.++++.+++.+|
T Consensus         4 ~~r~v~l~k~~-~~~~Gf~l~~~g~~~~~~~~~~~~~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~l   81 (96)
T 2ego_A            4 QRKVLTLEKGD-NQTFGFEIQTYGLHHREEQRVEMVTFVARVHESSPAQLAG-LTPGDTIASVNGLNVEGIRHREIVDII   81 (96)
T ss_dssp             CEEEEEEECCT-TCCCSEEEEEEEC-------CCEEEEEEEECTTCHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHH
T ss_pred             ccEEEEEEeCC-CCCccEEEEeccccccCCCCCCCCeEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHH
Confidence            34689999986 4699999997 111   01113589999999999999999 999999999999999999999999999


Q ss_pred             HhcCCCcEEEEEEeC
Q psy1156         651 KTIKNGSISLHICRR  665 (671)
Q Consensus       651 K~sg~~~VtL~V~Rr  665 (671)
                      +..+ +.|.|+|.+.
T Consensus        82 ~~~~-~~v~l~v~~~   95 (96)
T 2ego_A           82 KASG-NVLRLETLYG   95 (96)
T ss_dssp             HHTT-TEEEEEEECC
T ss_pred             HhCC-CeEEEEEEEC
Confidence            9985 6999999764

>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter usage, alternative splicing, cell junction, cell membrane, disease mutation; 1.75A {Homo sapiens}

Probab=99.37  E-value=2.6e-12  Score=110.64  Aligned_cols=80  Identities=31%  Similarity=0.557  Sum_probs=69.7

Q ss_pred             eEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcCCCc
Q psy1156         578 TIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKNGS  657 (671)
Q Consensus       578 ~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg~~~  657 (671)
                      .|+|.+......|||.+.+         |+||..|.++|+|+++|+|++||+|++|||+++.+++|++++.+|+..+ +.
T Consensus         3 ~v~l~~~~~~~~~G~~~~~---------gv~V~~V~~gspA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~i~~~~-~~   72 (88)
T 3e17_A            3 GVLLMKSRANEEYGLRLGS---------QIFVKEMTRTGLATKDGNLHEGDIILKINGTVTENMSLTDARKLIEKSR-GK   72 (88)
T ss_dssp             EEEEECBTTBCCCCEEEEE---------EEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHTT-TE
T ss_pred             EEEEEeCCCCCCCCEEEeC---------CEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC-Ce
Confidence            4667665556789999864         6999999999999999999999999999999999999999999999985 79


Q ss_pred             EEEEEEeCCC
Q psy1156         658 ISLHICRRLK  667 (671)
Q Consensus       658 VtL~V~Rr~~  667 (671)
                      |.|+|.+...
T Consensus        73 v~L~v~~~~~   82 (88)
T 3e17_A           73 LQLVVLRDLE   82 (88)
T ss_dssp             EEEEECCC--
T ss_pred             EEEEEeCCCc
Confidence            9999977654

>2awx_A Synapse associated protein 97; membrane protein, synaptic signaling, trafficking protein; HET: HIS; 1.80A {Rattus norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A

Probab=99.37  E-value=4.4e-12  Score=112.28  Aligned_cols=93  Identities=24%  Similarity=0.373  Sum_probs=79.5

Q ss_pred             CCeEEEEEEeCCCCCcccEEEeeecCCCC--CCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHH
Q psy1156         386 EGQTMVRVNRRDFNEELGIYIAKIKNSSE--GNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSII  463 (671)
Q Consensus       386 ~~~~~V~L~k~~~~~~LGfsI~gg~~~~~--g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L  463 (671)
                      ..++.|+|.|..  .+|||+|.++.+...  +. .|++|..|.++|||+++|+|++||+|++|||+.+.++++.+++..+
T Consensus         2 e~~~~v~l~k~~--~glG~~i~gg~~~~~~~~~-~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~   78 (105)
T 2awx_A            2 EKIMEIKLIKGP--KGLGFSIAGGVGNQHIPGD-NSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVSLEEVTHEEAVTAL   78 (105)
T ss_dssp             -CEEEEEEECBT--TBSSEEEEECBTSCSBTTB-CCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCBHHHHHHHH
T ss_pred             CeEEEEEEEECC--CCCCEEEeCccCCCCCCCC-CCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence            357889998865  799999999875431  12 5899999999999999999999999999999999999999999999


Q ss_pred             hcCCCeEEEEEEeCCccc
Q psy1156         464 SSGPLNMDLLISRTSLKK  481 (671)
Q Consensus       464 ~~~g~~V~L~V~R~~~~~  481 (671)
                      +..+..+.|+|.|.+...
T Consensus        79 ~~~~~~v~l~v~R~~~~~   96 (105)
T 2awx_A           79 KNTSDFVYLKVAKPTSMY   96 (105)
T ss_dssp             HSCCSEEEEEEECCCC--
T ss_pred             HcCCCeEEEEEEcCCCCC
Confidence            988889999999977643

>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain, adaptor protein, SR-BI, signaling protein; 1.30A {Mus musculus} SCOP: b.36.1.0 PDB: 3r69_A*

Probab=99.37  E-value=2.6e-12  Score=111.15  Aligned_cols=84  Identities=26%  Similarity=0.437  Sum_probs=72.0

Q ss_pred             eeeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcCC
Q psy1156         576 FHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKN  655 (671)
Q Consensus       576 ~~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg~  655 (671)
                      .+.|.|.+..  .+|||.+.++.+.    .|++|..|.++|||+++| |++||+|++|||++|.+++|.+++.+|+..+ 
T Consensus         6 ~r~v~l~~~~--~~~G~~l~~~~~~----~~~~V~~v~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~-   77 (95)
T 3r68_A            6 PRVVVIKKGS--NGYGFYLRAGPEQ----KGQIIKDIEPGSPAEAAG-LKNNDLVVAVNGKSVEALDHDGVVEMIRKGG-   77 (95)
T ss_dssp             CEEEEEECBT--TBCSCEEEEC--C----CSEEEECCCTTSHHHHHT-CCTTEEEEEETTEECTTCCHHHHHHHHHTTT-
T ss_pred             cEEEEEecCC--CcccEEEEecCCC----CCEEEEEECCCCHHHHCC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCC-
Confidence            3578898875  7999999877553    389999999999999999 9999999999999999999999999999975 


Q ss_pred             CcEEEEEEeCCC
Q psy1156         656 GSISLHICRRLK  667 (671)
Q Consensus       656 ~~VtL~V~Rr~~  667 (671)
                      +.+.|++.|+..
T Consensus        78 ~~~~~~~~r~~~   89 (95)
T 3r68_A           78 DQTTLLVLDKEL   89 (95)
T ss_dssp             TEEEEEEEECC-
T ss_pred             CeEEEEEECCcc
Confidence            778888877653

>2fne_A Multiple PDZ domain protein; structural protein, structural genomics, SGC, structural genomics consortium, unknown function; 1.83A {Homo sapiens} SCOP: b.36.1.1

Probab=99.37  E-value=1.5e-12  Score=118.29  Aligned_cols=90  Identities=28%  Similarity=0.403  Sum_probs=78.9

Q ss_pred             CeEEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhcC
Q psy1156         387 GQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSG  466 (671)
Q Consensus       387 ~~~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~~  466 (671)
                      ..+.|+|.|..  .+|||+|.++.+...+. .|++|..|.++|||+++|+|++||+|++|||++|.++++.+++.+++..
T Consensus        25 ~~~~v~L~k~~--~glGf~l~~g~~~~~~~-~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~  101 (117)
T 2fne_A           25 QCKSITLERGP--DGLGFSIVGGYGSPHGD-LPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRT  101 (117)
T ss_dssp             EEEEEEECCBT--TBTSEEEEEEEEETTEE-EEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHC
T ss_pred             ccEEEEEEeCC--CcccEEEecccCCCCCC-CCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence            56789998864  79999999876543223 6899999999999999999999999999999999999999999999977


Q ss_pred             CCeEEEEEEeCCc
Q psy1156         467 PLNMDLLISRTSL  479 (671)
Q Consensus       467 g~~V~L~V~R~~~  479 (671)
                      ++.|.|+|.|.+.
T Consensus       102 ~~~v~l~v~R~g~  114 (117)
T 2fne_A          102 KGTVTLMVLSSDE  114 (117)
T ss_dssp             CSSEEEEEEECSC
T ss_pred             CCeEEEEEEeCCc
Confidence            7889999999765

>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics consortium, SGC, protein BIN; 1.30A {Homo sapiens} SCOP: b.36.1.0

Probab=99.37  E-value=3.6e-12  Score=110.28  Aligned_cols=88  Identities=26%  Similarity=0.434  Sum_probs=75.7

Q ss_pred             CCCeEEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHh
Q psy1156         385 QEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIIS  464 (671)
Q Consensus       385 ~~~~~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~  464 (671)
                      +..++.|+|.|..  ++|||++.++...     .+++|..|.++|||+++|+|++||+|++|||+++.++++.+++.+|+
T Consensus         2 ~~~~r~v~l~k~~--~~lG~~i~~~~~~-----~~~~V~~v~~gspA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~   74 (93)
T 3o46_A            2 SDSVKIIRLVKNR--EPLGATIKKDEQT-----GAIIVARIMRGGAADRSGLIHVGDELREVNGIPVEDKRPEEIIQILA   74 (93)
T ss_dssp             --CCEEEEEEESS--SCCCEEEEECTTT-----CCEEEEEECTTSHHHHHTCCCTTCEEEEETTEESTTSCHHHHHHHHH
T ss_pred             CccEEEEEEEeCC--CCccEEEEecCCC-----CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            3467899999964  7999999976221     68999999999999999999999999999999999999999999999


Q ss_pred             cCCCeEEEEEEeCCc
Q psy1156         465 SGPLNMDLLISRTSL  479 (671)
Q Consensus       465 ~~g~~V~L~V~R~~~  479 (671)
                      ..++.+.|+|.+...
T Consensus        75 ~~~~~v~l~v~~~~~   89 (93)
T 3o46_A           75 QSQGAITFKIIPGSK   89 (93)
T ss_dssp             HCCEEEEEEEECC--
T ss_pred             hCCCeEEEEEEeCCC
Confidence            888899999987543

>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two alpha-helices, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1

Probab=99.36  E-value=6.2e-12  Score=108.09  Aligned_cols=87  Identities=24%  Similarity=0.292  Sum_probs=76.0

Q ss_pred             CCCeEEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHh
Q psy1156         385 QEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIIS  464 (671)
Q Consensus       385 ~~~~~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~  464 (671)
                      ..+++.|+|.+.....+|||.+.++...     .|++|..|.++|||+++| |++||+|++|||+.+.++++.+++.+++
T Consensus         4 ~~~~~~v~l~k~~~~~~~G~~~~~~~~~-----~gv~V~~V~~~spA~~aG-l~~GD~I~~vng~~v~~~~~~~~~~~~~   77 (91)
T 1m5z_A            4 PVELHKVTLYKDSGMEDFGFSVADGLLE-----KGVYVKNIRPAGPGDLGG-LKPYDRLLQVNHVRTRDFDCCLVVPLIA   77 (91)
T ss_dssp             CCEEEEEEEECCTTCSSSSEEEEECTTS-----SCEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHH
T ss_pred             CcceEEEEEEECCCCCCccEEEEeccCC-----CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            3467889998864346899999986543     689999999999999999 9999999999999999999999998888


Q ss_pred             cCCCeEEEEEEeC
Q psy1156         465 SGPLNMDLLISRT  477 (671)
Q Consensus       465 ~~g~~V~L~V~R~  477 (671)
                      ..+..+.|+|.|+
T Consensus        78 ~~g~~v~l~v~R~   90 (91)
T 1m5z_A           78 ESGNKLDLVISRN   90 (91)
T ss_dssp             TSTTEEEEEEEEC
T ss_pred             cCCCEEEEEEEeC
Confidence            7788999999885

>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics, structural genomics consortium, SGC, signaling protein; 1.40A {Homo sapiens}

Probab=99.36  E-value=4.7e-12  Score=109.06  Aligned_cols=86  Identities=28%  Similarity=0.485  Sum_probs=76.9

Q ss_pred             CeEEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhcC
Q psy1156         387 GQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSG  466 (671)
Q Consensus       387 ~~~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~~  466 (671)
                      +.+.|+|.+. +..+|||++.++.+.     .|++|..|.++|||+++|.|++||+|++|||+++.++++.++..+++..
T Consensus         4 ~~~~v~l~k~-~~~~lG~~~~~~~~~-----~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~   77 (92)
T 2qg1_A            4 DTLTIGLQKK-PGKGLGLSIVGKRND-----TGVFVSDIVKGGIADADGRLMQGDQILMVNGEDVRNATQEAVAALLKCS   77 (92)
T ss_dssp             CEEEEEEECC-TTSCCSEEEECCSSS-----CSCEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHHC
T ss_pred             eEEEEEEEeC-CCCcccEEEEeccCC-----CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence            5678999884 468999999976542     6899999999999999999999999999999999999999999999988


Q ss_pred             CCeEEEEEEeCC
Q psy1156         467 PLNMDLLISRTS  478 (671)
Q Consensus       467 g~~V~L~V~R~~  478 (671)
                      +..+.|+|.|..
T Consensus        78 ~~~v~l~v~R~~   89 (92)
T 2qg1_A           78 LGTVTLEVGRIS   89 (92)
T ss_dssp             CSEEEEEEECCC
T ss_pred             CCeEEEEEEccc
Confidence            889999999865

>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.36  E-value=2.9e-12  Score=116.03  Aligned_cols=90  Identities=26%  Similarity=0.304  Sum_probs=77.2

Q ss_pred             ceeeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcC
Q psy1156         575 TFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIK  654 (671)
Q Consensus       575 ~~~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg  654 (671)
                      ..+.|.|.+.. ..+|||.+.++.+..  ..|+||..|.++|||+++|+|++||+|++|||++|.++++.+++.+|+.. 
T Consensus        15 ~~~~v~l~k~~-~~~lG~~i~~~~~~~--~~~~~V~~V~~~spA~~aG~l~~GD~Il~Ing~~v~~~~~~~~~~~l~~~-   90 (117)
T 1v62_A           15 GPLMVEIVKTP-GSALGISLTTTSLRN--KSVITIDRIKPASVVDRSGALHPGDHILSIDGTSMEHCSLLEATKLLASI-   90 (117)
T ss_dssp             SSEEEEEECCT-TCCCCCEEEEECCSS--SCEEEEEECCTTSHHHHHTCCCTTCBEEEETTEETTSCCHHHHHHHHHSC-
T ss_pred             CcEEEEEEcCC-CCcccEEEEccCCCC--CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC-
Confidence            45688998876 378999999875432  23599999999999999999999999999999999999999999999975 


Q ss_pred             CCcEEEEEEeCCCC
Q psy1156         655 NGSISLHICRRLKS  668 (671)
Q Consensus       655 ~~~VtL~V~Rr~~~  668 (671)
                      ...|.|+|.|....
T Consensus        91 g~~v~l~v~r~~~~  104 (117)
T 1v62_A           91 SEKVRLEILPVPQS  104 (117)
T ss_dssp             SSEEEEEECCBTTB
T ss_pred             CCeEEEEEEECCCC
Confidence            47899999987653

>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=99.36  E-value=3.6e-12  Score=113.61  Aligned_cols=92  Identities=24%  Similarity=0.330  Sum_probs=78.4

Q ss_pred             CCCeEEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHh
Q psy1156         385 QEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIIS  464 (671)
Q Consensus       385 ~~~~~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~  464 (671)
                      ...++.|.|.|..  .+|||+|.++.+.......|++|..|.++|||+++|+|++||+|++|||+.|.++++.+++.+|+
T Consensus        13 ~~~~~~v~l~k~~--~glG~~i~~~~~~~~~~~~g~~V~~v~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~   90 (108)
T 2d92_A           13 SPEVKIVELVKDC--KGLGFSILDYQDPLDPTRSVIVIRSLVADGVAERSGGLLPGDRLVSVNEYCLDNTSLAEAVEILK   90 (108)
T ss_dssp             CSSCEEEEEEECS--SCCSEEEEEEECSSCTTCEEEEEEEECTTCHHHHHTCCCTTCEEEEESSCBCTTCCHHHHHHHHH
T ss_pred             CCceEEEEEEECC--CccCEEEecccccCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            4567899999964  79999999876522111278999999999999999999999999999999999999999999999


Q ss_pred             cC-CCeEEEEEEeCC
Q psy1156         465 SG-PLNMDLLISRTS  478 (671)
Q Consensus       465 ~~-g~~V~L~V~R~~  478 (671)
                      .. +..|.|+|.|..
T Consensus        91 ~~~~~~v~l~v~R~~  105 (108)
T 2d92_A           91 AVPPGLVHLGICSGP  105 (108)
T ss_dssp             HSCSEEEEEEEECCC
T ss_pred             hCCCCeEEEEEEcCC
Confidence            74 578999998854

>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation, structural genomics, structural genomics consortium, SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A

Probab=99.36  E-value=5.6e-12  Score=108.30  Aligned_cols=86  Identities=22%  Similarity=0.329  Sum_probs=76.5

Q ss_pred             CCeEEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhc
Q psy1156         386 EGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISS  465 (671)
Q Consensus       386 ~~~~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~  465 (671)
                      ...++|+|.+..  .+|||.+.++...     .|++|..|.++|||+++| |++||+|++|||+.+.++++.++..+|+.
T Consensus         3 ~~~r~v~l~k~~--~g~G~~~~~~~~~-----~gv~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~   74 (90)
T 2he4_A            3 LRPRLCHLRKGP--QGYGFNLHSDKSR-----PGQYIRSVDPGSPAARSG-LRAQDRLIEVNGQNVEGLRHAEVVASIKA   74 (90)
T ss_dssp             TCCEEEEEECBT--TBCCEEEEECSSS-----SSEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTSCHHHHHHHHTT
T ss_pred             CCcEEEEEEECC--CCccEEEEccCCC-----CCEEEEEECCCChHHHCC-CCCCCEEEEECCEECCCCCHHHHHHHHHc
Confidence            356889998864  7999999987642     689999999999999999 99999999999999999999999999998


Q ss_pred             CCCeEEEEEEeCCc
Q psy1156         466 GPLNMDLLISRTSL  479 (671)
Q Consensus       466 ~g~~V~L~V~R~~~  479 (671)
                      .+..+.|+|.|...
T Consensus        75 ~~~~v~l~v~r~~~   88 (90)
T 2he4_A           75 REDEARLLVVGPST   88 (90)
T ss_dssp             SSSEEEEEEECCCC
T ss_pred             CCCcEEEEEEccCC
Confidence            78899999998653

>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding site complex, protein binding; 1.43A {Homo sapiens} SCOP: b.36.1.1 PDB: 3nfl_A 2vph_A

Probab=99.36  E-value=2.3e-12  Score=114.18  Aligned_cols=87  Identities=23%  Similarity=0.378  Sum_probs=75.1

Q ss_pred             ceeeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhC-CCCCCCEEEEECCeecCCCCHHHHHHHHHhc
Q psy1156         575 TFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDG-RLKEGDEILAINGQVCHDLTHLEAISLFKTI  653 (671)
Q Consensus       575 ~~~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraG-rLr~GDrILeVNG~sV~~lSheEAV~lLK~s  653 (671)
                      ..+.|.|.+.. ..+|||.+.++.+..   .|++|..|.++|||+++| +|++||+|++|||++|.+++|.+++.+|+..
T Consensus        17 ~~~~v~l~~~~-~~~~G~~~~gg~~~~---~~~~V~~V~~~spA~~aG~rL~~GD~Il~ing~~v~~~~~~~~~~~i~~~   92 (107)
T 3nfk_A           17 NLVLIRMKPDE-NGRFGFNVKGGYDQK---MPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIKAS   92 (107)
T ss_dssp             CCEEEEECCCT-TSCCCEEEEEEGGGT---EEEEEEEECTTSHHHHSSSCCCTTCEEEEETTEECTTCCHHHHHHHHHCG
T ss_pred             CEEEEEEEcCC-CCCCCEEEEccCCCC---CCeEEEEECCCCchHHcCCccCCCCEEEEECCEECCCCCHHHHHHHHHhc
Confidence            45678888875 379999999876542   489999999999999999 6999999999999999999999999999987


Q ss_pred             CC---CcEEEEEEeC
Q psy1156         654 KN---GSISLHICRR  665 (671)
Q Consensus       654 g~---~~VtL~V~Rr  665 (671)
                      +.   ..|.|+|.|+
T Consensus        93 ~~~~~~~v~l~v~r~  107 (107)
T 3nfk_A           93 CERHSGELMLLVRPN  107 (107)
T ss_dssp             GGSBTTBEEEEEECC
T ss_pred             cccCCcEEEEEEEcC
Confidence            52   3899999874

>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.36  E-value=2.4e-12  Score=116.23  Aligned_cols=89  Identities=28%  Similarity=0.500  Sum_probs=76.7

Q ss_pred             ceeeEEEeeCCCCCcccEEEecCCCCCC---CCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHH
Q psy1156         575 TFHTIVFEKGPGKKGLGFTIVGGKDSPR---GAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFK  651 (671)
Q Consensus       575 ~~~~V~L~K~~g~~~LGfsL~Gg~ds~~---g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK  651 (671)
                      ..+.|.|.+.. ..+|||.|.++.+.+.   +..|++|..|.++|||+ +| |++||+|++|||++|.+++|.+++.+|+
T Consensus        14 ~~~~v~l~k~~-~~glG~~i~gg~~~~~~~~~~~gv~V~~V~~~spA~-~g-L~~GD~I~~Vng~~v~~~~~~~~~~~l~   90 (117)
T 2csj_A           14 EQYTVTLQKDS-KRGFGIAVSGGRDNPHFENGETSIVISDVLPGGPAD-GL-LQENDRVVMVNGTPMEDVLHSFAVQQLR   90 (117)
T ss_dssp             EEEEEEEECCS-SSTTCEEEECCSSCCCCSSCCCBCEEEEECTTSSHH-HH-BCTTCEEEEESSCBCBTCCHHHHHHHHH
T ss_pred             eEEEEEEEECC-CCccCEEEeCCcCCccccCCCCCEEEEEECCCCccc-cc-CCCCCEEEEECCEECCCcCHHHHHHHHh
Confidence            45678888875 4799999999876543   35689999999999997 77 9999999999999999999999999999


Q ss_pred             hcCCCcEEEEEEeCCC
Q psy1156         652 TIKNGSISLHICRRLK  667 (671)
Q Consensus       652 ~sg~~~VtL~V~Rr~~  667 (671)
                      ..+ ..|.|+|.|+.+
T Consensus        91 ~~~-~~v~l~v~R~~~  105 (117)
T 2csj_A           91 KSG-KIAAIVVKRPRK  105 (117)
T ss_dssp             HSC-SEEEEEEEEEEE
T ss_pred             cCC-CeEEEEEEECCc
Confidence            874 789999998754

>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding protein, membrane, sensory transduction, vision; 1.55A {Drosophila melanogaster} PDB: 2qkt_A 2qku_A

Probab=99.36  E-value=2.8e-12  Score=112.03  Aligned_cols=88  Identities=24%  Similarity=0.377  Sum_probs=73.7

Q ss_pred             ceeeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcC
Q psy1156         575 TFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIK  654 (671)
Q Consensus       575 ~~~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg  654 (671)
                      ..+.|.|.+.. ..+|||.+.+.      ..|++|..|.++|||+++|+|++||+|++|||++|.++++.+++.+++..+
T Consensus         8 ~~~~v~l~~~~-~~glG~~~~~~------~~gv~V~~V~~~spA~~aG~L~~GD~I~~Ing~~v~~~~~~~~~~~~~~~~   80 (96)
T 2qkv_A            8 EKFNVDLMKKA-GKELGLSLSPN------EIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVSYALFKGAN   80 (96)
T ss_dssp             CCEEEEEECBT-TBCCCEEEEEC------SSSEEEEEECTTSCHHHHHHCCTTCEEEEETTEECTTCCHHHHHHHHHTCS
T ss_pred             ceEEEEEEeCC-CCCccEEEEeC------CCcEEEEEeCCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHhcCC
Confidence            34578887654 37899999772      148999999999999999999999999999999999999999999999875


Q ss_pred             CCcEEEEEEeCCCCCC
Q psy1156         655 NGSISLHICRRLKSKK  670 (671)
Q Consensus       655 ~~~VtL~V~Rr~~~~~  670 (671)
                       +.|.|+|.|..+...
T Consensus        81 -~~v~l~v~R~~p~~~   95 (96)
T 2qkv_A           81 -GKVSMEVTRPKPAAA   95 (96)
T ss_dssp             -SEEEEEEECCCC---
T ss_pred             -CcEEEEEEeCCcccC
Confidence             789999999876654

>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation, leucine-rich repeat, alternative splicing, cytoplasm, circletail, coiled coil; 1.30A {Homo sapiens}

Probab=99.36  E-value=7.4e-12  Score=108.68  Aligned_cols=88  Identities=30%  Similarity=0.539  Sum_probs=75.3

Q ss_pred             eeeEEEeeCCCCCcccEEEecCCCCCC---CCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHh
Q psy1156         576 FHTIVFEKGPGKKGLGFTIVGGKDSPR---GAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKT  652 (671)
Q Consensus       576 ~~~V~L~K~~g~~~LGfsL~Gg~ds~~---g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~  652 (671)
                      .+.+.+.+..  .+|||+|.++.+...   ...|++|..|.++|||+++| |++||+|++|||++|.++++.+++..++.
T Consensus         4 ~~~v~~~~~~--~glG~~i~~g~~~~~~~~~~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~~~~   80 (97)
T 2w4f_A            4 ELTLTILRQT--GGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAG-VRVGDKLLEVNGVALQGAEHHEAVEALRG   80 (97)
T ss_dssp             EEEEEEECBT--TBSSEEEEECTTSCCSBTTBCSEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHT
T ss_pred             EEEEEEEeCC--CceeEEEECCccCCcccCCCCCEEEEEECCCChHHHcC-CCCCCEEEEECCEECCCcCHHHHHHHHhC
Confidence            4567787774  899999998776432   34689999999999999999 99999999999999999999999988887


Q ss_pred             cCCCcEEEEEEeCCC
Q psy1156         653 IKNGSISLHICRRLK  667 (671)
Q Consensus       653 sg~~~VtL~V~Rr~~  667 (671)
                      . ...|.|+|.|+.+
T Consensus        81 ~-g~~v~l~v~R~g~   94 (97)
T 2w4f_A           81 A-GTAVQMRVWRERE   94 (97)
T ss_dssp             S-CSEEEEEEECCSS
T ss_pred             C-CCeEEEEEEeCCc
Confidence            5 4789999999764

>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1

Probab=99.35  E-value=4.2e-12  Score=109.34  Aligned_cols=84  Identities=23%  Similarity=0.369  Sum_probs=73.4

Q ss_pred             eEEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhh-cCCCCCCCEEEccCCeeccCCCHHHHHHHHhcC
Q psy1156         388 QTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEK-EGCLELGDEIISVNGQRLRGLTMTQAKSIISSG  466 (671)
Q Consensus       388 ~~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~r-aG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~~  466 (671)
                      ++.|+|.|. ++++|||+|.++..      .+++|..|.++|||++ +| |++||+|++|||+++.++++++++.+|+..
T Consensus         2 ~r~V~l~K~-~~~~lG~~i~~~~~------~~~~I~~V~~gspA~~~ag-L~~GD~I~~Ing~~v~~~~~~~~~~~l~~~   73 (88)
T 1kwa_A            2 SRLVQFQKN-TDEPMGITLKMNEL------NHCIVARIMHGGMIHRQGT-LHVGDEIREINGISVANQTVEQLQKMLREM   73 (88)
T ss_dssp             CEEEEEEEC-SSSCCCEEEECSCG------GGEEEEEECTTSHHHHHTC-CCTTCEEEEETTEEGGGSCHHHHHHHHHHC
T ss_pred             eEEEEEEeC-CCCceeEEEEeCCC------CCEEEEEECCCCHHHHcCC-CCCCCEEEEECCEECCCCCHHHHHHHHhcC
Confidence            578999985 46899999996421      5799999999999999 56 999999999999999999999999999977


Q ss_pred             CCeEEEEEEeCCc
Q psy1156         467 PLNMDLLISRTSL  479 (671)
Q Consensus       467 g~~V~L~V~R~~~  479 (671)
                      .+.+.|+|.|...
T Consensus        74 ~~~v~l~v~r~~~   86 (88)
T 1kwa_A           74 RGSITFKIVPSYR   86 (88)
T ss_dssp             CEEEEEEEECCCC
T ss_pred             CCcEEEEEECCcC
Confidence            6699999988653

>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane, mitochondria distribution, PDZ, membrane, scaffold, mitochondrion, membrane protein; 1.35A {Homo sapiens} PDB: 2jin_A

Probab=99.35  E-value=6.1e-12  Score=110.33  Aligned_cols=92  Identities=26%  Similarity=0.345  Sum_probs=79.0

Q ss_pred             CCeEEEEEEeCCCCCcccEEEeeecCCCCC-CcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHh
Q psy1156         386 EGQTMVRVNRRDFNEELGIYIAKIKNSSEG-NIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIIS  464 (671)
Q Consensus       386 ~~~~~V~L~k~~~~~~LGfsI~gg~~~~~g-~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~  464 (671)
                      ...+.|+|.+..  .+|||++.++.+.... ...|++|..|.++|||+++|.|++||+|++|||+.+.++++.+++.+++
T Consensus         6 ~~~~~v~l~~~~--~~lG~~l~~g~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~   83 (101)
T 2jik_A            6 VTEEEINLTRGP--SGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFR   83 (101)
T ss_dssp             EEEEEEEEECCT--TCCCEEEEECTTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHH
T ss_pred             CccEEEEEEeCC--CCCCEEEeccccCCCccCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            356889998854  8999999998754310 1168999999999999999999999999999999999999999999998


Q ss_pred             cCCCeEEEEEEeCCc
Q psy1156         465 SGPLNMDLLISRTSL  479 (671)
Q Consensus       465 ~~g~~V~L~V~R~~~  479 (671)
                      ..+..+.|+|.|.+.
T Consensus        84 ~~g~~v~l~v~R~~~   98 (101)
T 2jik_A           84 NAGYAVSLRVQHRLE   98 (101)
T ss_dssp             TCCSEEEEEEEEESC
T ss_pred             hCCCeEEEEEEeCCC
Confidence            778899999988654

>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor, PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2

Probab=99.35  E-value=2.7e-12  Score=118.49  Aligned_cols=93  Identities=27%  Similarity=0.425  Sum_probs=78.3

Q ss_pred             CCCCeEEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHH
Q psy1156         384 SQEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSII  463 (671)
Q Consensus       384 ~~~~~~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L  463 (671)
                      .+..++.|+|.+.  ..+|||+|.++.+...+. .+++|..|.+|+||+++|.|++||+|++|||+.+.+++|.+++.+|
T Consensus        26 ~~~~~~~v~l~k~--~~glG~~i~gg~~~~~~~-~~i~I~~V~~gs~A~~aggL~~GD~Il~Vng~~v~~~~~~~~~~~l  102 (130)
T 1i16_A           26 AEATVCTVTLEKM--SAGLGFSLEGGKGSLHGD-KPLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNII  102 (130)
T ss_dssp             SSEEEEEEEEETT--SSSTTEEEECCCCCSSSC-CCCEEEEECSSCCCSSSCCCCTTCCEEECSSCBGGGSCHHHHHHHH
T ss_pred             CCCcEEEEEEEcC--CCccCEEEecCcCCCCCC-CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence            3557788999875  379999999987633223 6899999999999999944999999999999999999999999999


Q ss_pred             hcCC-CeEEEEEEeCCc
Q psy1156         464 SSGP-LNMDLLISRTSL  479 (671)
Q Consensus       464 ~~~g-~~V~L~V~R~~~  479 (671)
                      +..+ ..|.|+|.|...
T Consensus       103 ~~~~~~~v~l~v~r~~~  119 (130)
T 1i16_A          103 KALPDGPVTIVIRRKSL  119 (130)
T ss_dssp             HTSCSSEEEEEEEEESS
T ss_pred             HhCCCceEEEEEEeCCC
Confidence            9764 469999988644

>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal transduction, structural genom structural genomics consortium, SGC, signaling protein; 1.85A {Homo sapiens} PDB: 2wl7_A 3rl7_B 1rgr_A* 1kef_A 1zok_A 1iu0_A 1iu2_A

Probab=99.35  E-value=5.9e-12  Score=110.60  Aligned_cols=91  Identities=21%  Similarity=0.305  Sum_probs=78.8

Q ss_pred             CeEEEEEEeCCCCCcccEEEeeecCCCCC-CcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhc
Q psy1156         387 GQTMVRVNRRDFNEELGIYIAKIKNSSEG-NIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISS  465 (671)
Q Consensus       387 ~~~~V~L~k~~~~~~LGfsI~gg~~~~~g-~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~  465 (671)
                      +.+.|+|.+.  ..+|||+|.++.+.+.. ...|++|..|.++|||+++|.|++||+|++|||+.+.++++.+++.+++.
T Consensus         4 ~~~~v~l~k~--~~glG~~i~~g~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~   81 (102)
T 2i1n_A            4 KYEEIVLERG--NSGLGFSIAGGIDNPHVPDDPGIFITKIIPGGAAAMDGRLGVNDCVLRVNEVDVSEVVHSRAVEALKE   81 (102)
T ss_dssp             EEEEEEEECB--TTBTSEEEEECTTSCSSTTCCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHH
T ss_pred             eEEEEEEEEC--CCcCCEEEEcccCCCCcCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHc
Confidence            4577888875  48999999998754321 12689999999999999999999999999999999999999999999998


Q ss_pred             CCCeEEEEEEeCCc
Q psy1156         466 GPLNMDLLISRTSL  479 (671)
Q Consensus       466 ~g~~V~L~V~R~~~  479 (671)
                      .+..+.|+|.|.+.
T Consensus        82 ~g~~v~l~v~R~~~   95 (102)
T 2i1n_A           82 AGPVVRLVVRRRQP   95 (102)
T ss_dssp             SCSEEEEEEEEECC
T ss_pred             CCCeEEEEEEeCCC
Confidence            88999999999765

>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=99.35  E-value=6.4e-12  Score=115.23  Aligned_cols=92  Identities=21%  Similarity=0.418  Sum_probs=78.5

Q ss_pred             cceeeEEEeeCCCCCcccEEEecCCCCCC--CCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHH
Q psy1156         574 CTFHTIVFEKGPGKKGLGFTIVGGKDSPR--GAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFK  651 (671)
Q Consensus       574 ~~~~~V~L~K~~g~~~LGfsL~Gg~ds~~--g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK  651 (671)
                      ...+.|.|.+.. ..+|||.+.++.+...  ...|++|..|.++|||+++|+|++||+|++|||++|.++++.+++.+|+
T Consensus        14 ~~~~~v~l~~~~-~~~lG~~i~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~l~   92 (129)
T 2dmz_A           14 FETYNVELVRKD-GQSLGIRIVGYVGTSHTGEASGIYVKSVIPGSAAYHNGHIQVNDKIVAVDGVNIQGFANHDVVEVLR   92 (129)
T ss_dssp             EEEEEEEECCCT-TCCCCEEEEEECCCSSSCCCCEEEEEEECTTSHHHHHTCCCSSCBEEEETTBCCTTCCHHHHHHHHH
T ss_pred             CcEEEEEEEeCC-CCCcCEEEEeecCCcccCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            356678886644 4899999998765433  3468999999999999999999999999999999999999999999999


Q ss_pred             hcCCCcEEEEEEeCCC
Q psy1156         652 TIKNGSISLHICRRLK  667 (671)
Q Consensus       652 ~sg~~~VtL~V~Rr~~  667 (671)
                      .. ...|.|+|.|+..
T Consensus        93 ~~-~~~v~l~v~R~~~  107 (129)
T 2dmz_A           93 NA-GQVVHLTLVRRKT  107 (129)
T ss_dssp             HC-CSSEEEEEEEESS
T ss_pred             cC-CCeEEEEEEeCCc
Confidence            84 5789999999764

>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A* 1t2m_A 2ain_A

Probab=99.35  E-value=7.1e-12  Score=110.97  Aligned_cols=92  Identities=24%  Similarity=0.456  Sum_probs=78.6

Q ss_pred             CCCeEEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHh
Q psy1156         385 QEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIIS  464 (671)
Q Consensus       385 ~~~~~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~  464 (671)
                      +...+.|+| +.  ..+|||+|.++....... .|++|..|.++|||+++|+|++||+|++|||+.+.++++.+++.+++
T Consensus         9 ~~~~~~v~l-~~--~~glG~~i~~~~~~~~~~-~gv~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~~~   84 (106)
T 3axa_A            9 EPEIITVTL-KK--QNGMGLSIVAAKGAGQDK-LGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAELMT   84 (106)
T ss_dssp             -CCEEEEEE-EC--SSSCSEEEEEEECSSCSS-EEEEEEEEBTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHH
T ss_pred             CceEEEEEE-CC--CCccCEEEEeecCCCCCC-CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            446677888 54  489999999875433233 68999999999999999999999999999999999999999999998


Q ss_pred             cCCCeEEEEEEeCCcc
Q psy1156         465 SGPLNMDLLISRTSLK  480 (671)
Q Consensus       465 ~~g~~V~L~V~R~~~~  480 (671)
                      ..+..+.|+|.|.+..
T Consensus        85 ~~g~~v~l~v~R~~~~  100 (106)
T 3axa_A           85 RTSSVVTLEVAKQGAI  100 (106)
T ss_dssp             TCCSEEEEEEECCCSS
T ss_pred             cCCCeEEEEEEeCCcc
Confidence            8889999999997653

>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A

Probab=99.35  E-value=9.9e-14  Score=153.13  Aligned_cols=154  Identities=19%  Similarity=0.271  Sum_probs=52.2

Q ss_pred             CcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHh--cCCCeEEEEEEeCCccccccccccccccccc
Q psy1156         418 GGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIIS--SGPLNMDLLISRTSLKKSNAENEYNESHSRE  495 (671)
Q Consensus       418 ~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~--~~g~~V~L~V~R~~~~~~~a~~~~~~~~s~~  495 (671)
                      .|++|..|.+++||+++| |++||+|++|||+.|..+  .++..++.  ..+..+.|+|.|++........         
T Consensus       286 ~G~~V~~V~~gspA~~AG-L~~GDvI~~inG~~v~~~--~~l~~~l~~~~~g~~v~l~v~R~g~~~~~~v~---------  353 (448)
T 1ky9_A          286 RGAFVSQVLPNSSAAKAG-IKAGDVITSLNGKPISSF--AALRAQVGTMPVGSKLTLGLLRDGKQVNVNLE---------  353 (448)
T ss_dssp             CSEECCCCTTCSSSTTTT-CCTTCEECBSSSSBCCSS--HHHHHHTTSSBTTCCCEEEEESSSCEEECCCC---------
T ss_pred             CceEEEEeccCCHHHHcC-CCCCCEEEEECCEEcCCH--HHHHHHHHhcCCCCEEEEEEEECCEEEEEEEE---------
Confidence            689999999999999999 999999999999999876  45566665  3578899999997653221000         


Q ss_pred             ccccccccccccCCcccCCcccchhhhhhhccccccccchhhhhhcccccCCCCCchhhhhhccCCccCCCCCCCCcccc
Q psy1156         496 KKSKETRFSLDKQNDFESSNEQDKNNQKRLFQKNCHSINNKLLRKAIISTGSISGDEEETILTSTNFCTLPRRPRSAICT  575 (671)
Q Consensus       496 ~~~~~~~ss~d~e~~~~ssp~~~k~s~~~~~q~~~~s~~~~~~r~~v~s~~s~s~d~~~s~~~s~~~~~lP~~p~s~~~~  575 (671)
                          .               ...      .             ... .     .                +.        
T Consensus       354 ----~---------------~~~------~-------------~~~-~-----~----------------~~--------  365 (448)
T 1ky9_A          354 ----L---------------QQS------S-------------QNQ-V-----D----------------SS--------  365 (448)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ----E---------------ecC------C-------------Ccc-c-----c----------------cc--------
Confidence                0               000      0             000 0     0                00        


Q ss_pred             eeeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcCC
Q psy1156         576 FHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKN  655 (671)
Q Consensus       576 ~~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg~  655 (671)
                        .  +  .  ..-+|+.+.....    ..|++|..|.++|+|+++| |++||+|++|||++|.  ++.++..+|+..+ 
T Consensus       366 --~--~--~--~~~~G~~l~~~~~----~~gv~V~~V~~gspA~~aG-L~~GDiI~~vng~~v~--~~~~l~~~l~~~~-  429 (448)
T 1ky9_A          366 --S--I--F--NGIEGAEMSNKGK----DQGVVVNNVKTGTPAAQIG-LKKGDVIIGANQQAVK--NIAELRKVLDSKP-  429 (448)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --c--c--c--ccccceEeeccCC----CCeEEEEEecCCCHHHHcC-CCCCCEEEEECCEECC--CHHHHHHHHHcCC-
Confidence              0  0  0  0123555532211    2489999999999999999 9999999999999998  6788999998765 


Q ss_pred             CcEEEEEEeCCC
Q psy1156         656 GSISLHICRRLK  667 (671)
Q Consensus       656 ~~VtL~V~Rr~~  667 (671)
                      +.|.|+|.|+..
T Consensus       430 ~~v~l~v~R~g~  441 (448)
T 1ky9_A          430 SVLALNIQRGDS  441 (448)
T ss_dssp             ------------
T ss_pred             CeEEEEEEECCE
Confidence            589999988764

>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane protein; NMR {Homo sapiens} PDB: 2ev8_A

Probab=99.35  E-value=4e-12  Score=112.27  Aligned_cols=83  Identities=29%  Similarity=0.378  Sum_probs=73.4

Q ss_pred             eeeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcCC
Q psy1156         576 FHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKN  655 (671)
Q Consensus       576 ~~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg~  655 (671)
                      .+.|.|.|..+ .+|||++....+     .|++|..|.++|||+++|+|++||+|++|||++|.++++.+++++|+..+ 
T Consensus        13 ~~~v~l~K~~~-~~lG~~l~~~~~-----~gv~V~~V~~gspA~~aG~L~~GD~Il~ING~~v~~~~~~~~~~~l~~~~-   85 (97)
T 2ejy_A           13 VRLIQFEKVTE-EPMGICLKLNEK-----QSCTVARILHGGMIHRQGSLHVGDEILEINGTNVTNHSVDQLQKAMKETK-   85 (97)
T ss_dssp             CEEEEEEECSS-SCCSEEEEECTT-----CCEEEEEECSSSHHHHHTCCCTTCEEEEETTBCCCSSCSHHHHHHHHHCC-
T ss_pred             cEEEEEEeCCC-CCeeEEEEeCCC-----CCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC-
Confidence            46889999874 799999986433     38999999999999999999999999999999999999999999999874 


Q ss_pred             CcEEEEEEeC
Q psy1156         656 GSISLHICRR  665 (671)
Q Consensus       656 ~~VtL~V~Rr  665 (671)
                      +.|.|+|.+.
T Consensus        86 ~~v~L~V~~~   95 (97)
T 2ejy_A           86 GMISLKVIPN   95 (97)
T ss_dssp             EEEEEEEECC
T ss_pred             CeEEEEEEEC
Confidence            7899999764

>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A 3qjm_A 3qjn_A 3o5n_A*

Probab=99.35  E-value=8.4e-12  Score=111.17  Aligned_cols=92  Identities=20%  Similarity=0.372  Sum_probs=76.6

Q ss_pred             ceeeEEEeeCCCCCcccEEEecCCCCCC---------CCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHH
Q psy1156         575 TFHTIVFEKGPGKKGLGFTIVGGKDSPR---------GAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLE  645 (671)
Q Consensus       575 ~~~~V~L~K~~g~~~LGfsL~Gg~ds~~---------g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheE  645 (671)
                      ..+.|.|.+.. ..+|||.|.++.+...         ...|++|..|.++|||+++| |++||+|++|||++|.+++|.+
T Consensus         7 ~~~~v~l~~~~-~~g~G~~l~~~~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG-l~~GD~I~~vng~~v~~~~~~~   84 (109)
T 1q3o_A            7 KEKTVLLQKKD-SEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAG-LRMGDFLIEVNGQNVVKVGHRQ   84 (109)
T ss_dssp             EEEEEEEECCT-TSCCSEEEEESSCCCTTSCCCCCSSCCSSEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHH
T ss_pred             CcEEEEEEECC-CCCCcEEEEeccCCCCcccccccccCCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHH
Confidence            45678887654 4799999998876321         12489999999999999999 9999999999999999999999


Q ss_pred             HHHHHHhcCCCcEEEEEEeCCCCC
Q psy1156         646 AISLFKTIKNGSISLHICRRLKSK  669 (671)
Q Consensus       646 AV~lLK~sg~~~VtL~V~Rr~~~~  669 (671)
                      ++.+|+..+ ..|.|+|.|..+..
T Consensus        85 ~~~~l~~~~-~~v~l~v~~~~~~p  107 (109)
T 1q3o_A           85 VVNMIRQGG-NTLMVKVVMVTRHP  107 (109)
T ss_dssp             HHHHHHHTT-TEEEEEEEEEECC-
T ss_pred             HHHHHHhCC-CEEEEEEEECCCCC
Confidence            999999874 78999998876543

>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer, membrane protein-oxidoreductase CO; 1.90A {Mus musculus} SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A

Probab=99.35  E-value=5.6e-12  Score=108.27  Aligned_cols=86  Identities=24%  Similarity=0.287  Sum_probs=75.8

Q ss_pred             CeEEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhcC
Q psy1156         387 GQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSG  466 (671)
Q Consensus       387 ~~~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~~  466 (671)
                      ..++|+|.+. ..++|||++.++.+..    .|++|..|.++|||+++|.|++||+|++|||+++.++++.+++.+++..
T Consensus         4 ~~~~v~l~k~-~~~~lG~~i~~~~~~~----~g~~V~~V~~~spA~~aggl~~GD~I~~ing~~v~~~~~~~~~~~~~~~   78 (90)
T 1qav_A            4 QRRRVTVRKA-DAGGLGISIKGGRENK----MPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKT   78 (90)
T ss_dssp             SCEEEEEECC-TTTCCCEEEEEEGGGT----EEEEEEEECTTSHHHHTTCCCTTEEEEEETTEECTTCCHHHHHHHHHTC
T ss_pred             ccEEEEEEeC-CCCCcCEEEEcccCCC----CCEEEEEECCCCHHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence            5688999885 3589999999876543    6899999999999999933999999999999999999999999999988


Q ss_pred             CCeEEEEEEeC
Q psy1156         467 PLNMDLLISRT  477 (671)
Q Consensus       467 g~~V~L~V~R~  477 (671)
                      +..+.|+|.|.
T Consensus        79 ~~~v~l~v~r~   89 (90)
T 1qav_A           79 GKEVVLEVKYM   89 (90)
T ss_dssp             CSEEEEEEEEC
T ss_pred             CCeEEEEEEEe
Confidence            88999999873

>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.34  E-value=8.4e-12  Score=111.23  Aligned_cols=93  Identities=27%  Similarity=0.446  Sum_probs=81.2

Q ss_pred             CCCeEEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHh
Q psy1156         385 QEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIIS  464 (671)
Q Consensus       385 ~~~~~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~  464 (671)
                      ....+.|+|.+..  .+|||+|.++.+...+. .|++|..|.++|||+++|+|++||+|++|||+.+.++++.+++.+++
T Consensus         6 ~~~~~~v~l~~~~--~glG~~l~~g~~~~~~~-~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~   82 (110)
T 1um1_A            6 SGYVFTVELERGP--SGLGMGLIDGMHTHLGA-PGLYIQTLLPGSPAAADGRLSLGDRILEVNGSSLLGLGYLRAVDLIR   82 (110)
T ss_dssp             CCCEEEEEEECCT--TCCCEEEEETTTSTTCC-SSEEEEEECTTSHHHHHSCCCTTCEEEEESSCBCSSCCHHHHHHHHH
T ss_pred             CCcEEEEEEEECC--CccCEEEeCCcCCCCCC-CCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            4567889998854  79999999876544333 78999999999999999999999999999999999999999999999


Q ss_pred             cCCCeEEEEEEeCCcc
Q psy1156         465 SGPLNMDLLISRTSLK  480 (671)
Q Consensus       465 ~~g~~V~L~V~R~~~~  480 (671)
                      ..+..+.|+|.|.+..
T Consensus        83 ~~~~~v~l~v~R~~~~   98 (110)
T 1um1_A           83 HGGKKMRFLVAKSDVE   98 (110)
T ss_dssp             TCCSEEEEEEECCCHH
T ss_pred             cCCCeEEEEEEeCCcc
Confidence            8889999999997653

>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ, structural genomics; NMR {Homo sapiens}

Probab=99.34  E-value=3.5e-12  Score=116.94  Aligned_cols=93  Identities=17%  Similarity=0.377  Sum_probs=81.4

Q ss_pred             CCCeEEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeecc-CCCHHHHHHHH
Q psy1156         385 QEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLR-GLTMTQAKSII  463 (671)
Q Consensus       385 ~~~~~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~-~~s~~~av~~L  463 (671)
                      ...++.|.|.+.. .++|||+|.++.+...+. .|++|..|.+++||+++|+|++||+|++|||+.|. ++++.+++.+|
T Consensus        23 ~~~~~~v~l~k~~-~~~lG~~i~g~~~~~~~~-~gv~V~~V~~~spA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~~l  100 (128)
T 2db5_A           23 GRQIEYIDIERPS-TGGLGFSVVALRSQNLGK-VDIFVKDVQPGSVADRDQRLKENDQILAINHTPLDQNISHQQAIALL  100 (128)
T ss_dssp             TCEEEEEEEECCS-SSCCCCEEEEEECSSSSC-EEEEEECCCTTSHHHHTCCCCSSCBEEEESSCBCSTTSCHHHHHHHH
T ss_pred             cCceEEEEEEECC-CCccCEEEecccCCCCCC-CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCCHHHHHHHH
Confidence            4567889998853 579999999887654333 58999999999999999999999999999999997 99999999999


Q ss_pred             hcCCCeEEEEEEeCCc
Q psy1156         464 SSGPLNMDLLISRTSL  479 (671)
Q Consensus       464 ~~~g~~V~L~V~R~~~  479 (671)
                      +..+..|.|+|.|...
T Consensus       101 ~~~~~~v~l~v~r~~~  116 (128)
T 2db5_A          101 QQTTGSLRLIVAREPV  116 (128)
T ss_dssp             HHCCSEEEEEEEECCC
T ss_pred             HcCCCeEEEEEEcCCC
Confidence            9888999999999754

>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase binding domain, signaling protein; HET: GNP; 2.10A {Mus musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A 2lc7_A 1rzx_A

Probab=99.34  E-value=2.8e-12  Score=117.95  Aligned_cols=92  Identities=23%  Similarity=0.295  Sum_probs=77.6

Q ss_pred             ceeeEEEeeCCCCCcccEEEecCCCCCC------CCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHH
Q psy1156         575 TFHTIVFEKGPGKKGLGFTIVGGKDSPR------GAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAIS  648 (671)
Q Consensus       575 ~~~~V~L~K~~g~~~LGfsL~Gg~ds~~------g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~  648 (671)
                      ..+.|.|.+.....+|||+|.++.+...      ...|++|..|.++|||+++|.|++||+|++|||++|.+++|.+++.
T Consensus        29 ~~r~v~l~k~~~~~~lG~~i~~~~~~~~~~~g~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~  108 (128)
T 1nf3_C           29 THRRVRLCKYGTEKPLGFYIRDGSSVRVTPHGLEKVPGIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVTD  108 (128)
T ss_dssp             TCEEEEECCSSTTSCCCEEEEEEEEEEEETTEEEEEEEEEEEEECTTCHHHHHTCCCTTCEEEEETTEESTTCCHHHHHH
T ss_pred             ccEEEEEEECCCCCCccEEEEccccccccccccCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHH
Confidence            4568999988544799999998754210      1248999999999999999989999999999999999999999999


Q ss_pred             HHHhcCCCcEEEEEEeCCC
Q psy1156         649 LFKTIKNGSISLHICRRLK  667 (671)
Q Consensus       649 lLK~sg~~~VtL~V~Rr~~  667 (671)
                      +|+..+ +.|.|+|.|...
T Consensus       109 ~l~~~~-~~v~l~v~r~~~  126 (128)
T 1nf3_C          109 MMIANS-RNLIITVRPANQ  126 (128)
T ss_dssp             HHHHTT-TSEEEEEECCCC
T ss_pred             HHHcCC-CeEEEEEEECCc
Confidence            999875 679999988764

>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3; neuron-specific X11L2 protein, neuronal MUNC18-1-interacting protein 3, MINT-3; NMR {Homo sapiens}

Probab=99.34  E-value=6.6e-12  Score=110.60  Aligned_cols=91  Identities=25%  Similarity=0.330  Sum_probs=74.8

Q ss_pred             ceeeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhc-
Q psy1156         575 TFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTI-  653 (671)
Q Consensus       575 ~~~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~s-  653 (671)
                      .++.|.+.+..+ .+|||.|.+.... ....|++|..|.++|||+++|.|++||+|++|||++|.++++.+++.+|+.. 
T Consensus         9 ~~~~v~l~k~~g-~~lG~~i~~~~~~-~~~~~~~V~~V~~~spA~~~ggl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~   86 (101)
T 2yt7_A            9 NCREVHLEKRRG-EGLGVALVESGWG-SLLPTAVIANLLHGGPAERSGALSIGDRLTAINGTSLVGLPLAACQAAVRETK   86 (101)
T ss_dssp             CCEEEEEECCTT-CCCCEEEEECCCS-SSSCCEEEEEECTTSTTGGGSSCCTTCEEEEESSCBCTTSCHHHHHHHHHHTT
T ss_pred             ceEEEEEEeCCC-CccCEEEEeCCCC-CCccCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence            567889988764 6899999753221 1223799999999999999666999999999999999989999999999984 


Q ss_pred             CCCcEEEEEEeCCC
Q psy1156         654 KNGSISLHICRRLK  667 (671)
Q Consensus       654 g~~~VtL~V~Rr~~  667 (671)
                      ....|.|+|.|..+
T Consensus        87 ~g~~v~l~v~R~~p  100 (101)
T 2yt7_A           87 SQTSVTLSIVHCPP  100 (101)
T ss_dssp             TSSEEEEEECCCCC
T ss_pred             CCCeEEEEEEeCCC
Confidence            34789999988764

>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide; peptide binding protein; NMR {Drosophila melanogaster}

Probab=99.34  E-value=4.6e-12  Score=113.24  Aligned_cols=85  Identities=25%  Similarity=0.388  Sum_probs=73.5

Q ss_pred             eeeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcCC
Q psy1156         576 FHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKN  655 (671)
Q Consensus       576 ~~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg~  655 (671)
                      ..+|.|.+.. ..+|||.+.+.      ..|++|..|.++|||+++|+|++||+|++|||++|.++++.+++.+++..+ 
T Consensus         3 ~~~v~L~k~~-~~glG~~i~~~------~~gv~V~~V~~gspA~~aG~L~~GD~Il~Ing~~v~~~~~~~~~~~~~~~~-   74 (106)
T 2la8_A            3 KFNVDLMKKA-GKELGLSLSPN------EIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYALFKGAN-   74 (106)
T ss_dssp             EEEEEECCBS-SSTTCCEEEEC------SSSEEEEECCTTSCHHHHTTCCTTCEEEEESSCBCSSSCHHHHHHHHHSCB-
T ss_pred             EEEEEEEeCC-CCccCEEEEeC------CCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHhCCC-
Confidence            4578887654 37899999872      148999999999999999999999999999999999999999999998875 


Q ss_pred             CcEEEEEEeCCCC
Q psy1156         656 GSISLHICRRLKS  668 (671)
Q Consensus       656 ~~VtL~V~Rr~~~  668 (671)
                      +.|.|+|.|..+.
T Consensus        75 ~~v~l~v~R~~~~   87 (106)
T 2la8_A           75 GKVSMEVTRPKPG   87 (106)
T ss_dssp             SCEEEEEEECCSC
T ss_pred             CeEEEEEEeCCCC
Confidence            7899999997543

>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.34  E-value=5.1e-12  Score=112.23  Aligned_cols=92  Identities=24%  Similarity=0.395  Sum_probs=78.0

Q ss_pred             CCCeEEEEEEeCCCCCcccEEEee---ecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHH
Q psy1156         385 QEGQTMVRVNRRDFNEELGIYIAK---IKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKS  461 (671)
Q Consensus       385 ~~~~~~V~L~k~~~~~~LGfsI~g---g~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~  461 (671)
                      ...++.|.|.+..  .+|||+|.+   +.+..... .|++|..|.++|||+++|+|++||+|++|||+.+.++++.+++.
T Consensus         7 ~~~~~~v~l~k~~--~glG~~i~~~~~g~~~~~~~-~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~   83 (107)
T 1wf8_A            7 GLELFPVELEKDE--DGLGISIIGMGVGADAGLEK-LGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQNFAAT   83 (107)
T ss_dssp             CEEEEEEEEECBT--TBSCEEEEEEEESCCTTCCE-EEEEEEEECTTCHHHHHCSSCTTCBEEEETTEECBSCCHHHHHH
T ss_pred             CceEEEEEEEECC--CcccEEEEecCCCCCCCCCC-CCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHH
Confidence            3456778887753  799999998   33322223 68999999999999999999999999999999999999999999


Q ss_pred             HHhcCCCeEEEEEEeCCc
Q psy1156         462 IISSGPLNMDLLISRTSL  479 (671)
Q Consensus       462 ~L~~~g~~V~L~V~R~~~  479 (671)
                      +++..+..+.|+|.|...
T Consensus        84 ~~~~~~~~v~l~v~R~~~  101 (107)
T 1wf8_A           84 VLRNTKGNVRFVIGREKP  101 (107)
T ss_dssp             HHHHCCSEEEEEEEEECC
T ss_pred             HHhcCCCeEEEEEEeCCC
Confidence            999888999999998654

>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing isoform B; GOPC PDZ domain, structural protein; NMR {Homo sapiens}

Probab=99.34  E-value=4.8e-12  Score=112.04  Aligned_cols=89  Identities=27%  Similarity=0.349  Sum_probs=77.1

Q ss_pred             CCCeEEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhc-CCCCCCCEEEccCCeeccCCCHHHHHHHH
Q psy1156         385 QEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKE-GCLELGDEIISVNGQRLRGLTMTQAKSII  463 (671)
Q Consensus       385 ~~~~~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~ra-G~L~~GD~IlaVNG~~V~~~s~~~av~~L  463 (671)
                      ...++.|.|.+. .+++|||+|.++.+..    .|++|..|.++|||+++ | |++||+|++|||+++.++++.+++.++
T Consensus         7 ~~~~~~v~l~~~-~~~~lG~~l~~g~~~~----~~~~V~~V~~~s~A~~a~g-L~~GD~Il~Ing~~v~~~~~~~~~~~l   80 (103)
T 2dc2_A            7 VGPIRKVLLLKE-DHEGLGISITGGKEHG----VPILISEIHPGQPADRCGG-LHVGDAILAVNGVNLRDTKHKEAVTIL   80 (103)
T ss_dssp             --CEEEEEEECC-SSSCCCEEEEEEGGGT----EEEEEEEECTTSHHHHHTC-CCSSEEEEEETTEESTTSCHHHHHHHH
T ss_pred             CCCcEEEEEEeC-CCCccCEEEEeccCCC----CCEEEEEECCCCHHHHhCC-CCCCCEEEEECCEECCCCCHHHHHHHH
Confidence            345678998874 4689999999887543    58999999999999996 7 999999999999999999999999999


Q ss_pred             hcCCCeEEEEEEeCCc
Q psy1156         464 SSGPLNMDLLISRTSL  479 (671)
Q Consensus       464 ~~~g~~V~L~V~R~~~  479 (671)
                      +..++.+.|+|.+...
T Consensus        81 ~~~~~~v~l~v~~~~~   96 (103)
T 2dc2_A           81 SQQRGEIEFEVVYVAL   96 (103)
T ss_dssp             HHCCSEEEEEEEECC-
T ss_pred             HhCCCcEEEEEEecCC
Confidence            9888899999998655

>4e34_A Golgi-associated PDZ and coiled-coil motif-contai protein; PDZ-peptide complex, protein transport-inhibitor complex; 1.40A {Homo sapiens} PDB: 4e35_A

Probab=99.34  E-value=5e-12  Score=107.80  Aligned_cols=84  Identities=27%  Similarity=0.367  Sum_probs=74.2

Q ss_pred             CeEEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhh-cCCCCCCCEEEccCCeeccCCCHHHHHHHHhc
Q psy1156         387 GQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEK-EGCLELGDEIISVNGQRLRGLTMTQAKSIISS  465 (671)
Q Consensus       387 ~~~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~r-aG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~  465 (671)
                      +++.|+|.+. +.++|||++.++.+..    .+++|..|.++|||++ +| |++||+|++|||+++.++++.+++.+++.
T Consensus         2 ~~~~v~l~~~-~~~~lG~~i~~~~~~~----~~~~V~~V~~gspA~~~ag-l~~GD~I~~vng~~v~~~~~~~~~~~~~~   75 (87)
T 4e34_A            2 PIRKVLLLKE-DHEGLGISITGGKEHG----VPILISEIHPGQPADRCGG-LHVGDAILAVNGVNLRDTKHKEAVTILSQ   75 (87)
T ss_dssp             CCEEEEEECC-TTBCCCEEEEEEGGGT----EEEEEEEECTTSHHHHHSC-CCTTEEEEEETTEECTTCCHHHHHHHHHH
T ss_pred             CEEEEEEEEC-CCCcccEEEEccCCCC----CCEEEEEECCCCHHHhcCC-CCCCCEEEEECCEECCCCCHHHHHHHHHc
Confidence            4678999885 4689999999886543    6799999999999999 57 99999999999999999999999999998


Q ss_pred             CCCeEEEEEEe
Q psy1156         466 GPLNMDLLISR  476 (671)
Q Consensus       466 ~g~~V~L~V~R  476 (671)
                      .+..+.|+|.+
T Consensus        76 ~~~~v~l~v~~   86 (87)
T 4e34_A           76 QRGEIEFEVVY   86 (87)
T ss_dssp             CCSEEEEEEEE
T ss_pred             CCCeEEEEEEE
Confidence            88889998864

>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein; 1.80A {Drosophila melanogaster} SCOP: b.36.1.1

Probab=99.34  E-value=7.2e-12  Score=109.13  Aligned_cols=91  Identities=24%  Similarity=0.354  Sum_probs=77.8

Q ss_pred             CeEEEEEEeCCCCCcccEEEeeecCCCCC--CcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHh
Q psy1156         387 GQTMVRVNRRDFNEELGIYIAKIKNSSEG--NIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIIS  464 (671)
Q Consensus       387 ~~~~V~L~k~~~~~~LGfsI~gg~~~~~g--~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~  464 (671)
                      .++.|+|.|. ...+|||+|.++.+...+  ...|++|..|.++|||+++|.|++||+|++|||+.+.++++.++..+++
T Consensus         5 ~~~~v~l~k~-~~~glG~~i~~~~~~~~~~~~~~g~~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~   83 (98)
T 1ihj_A            5 LIHMVTLDKT-GKKSFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIK   83 (98)
T ss_dssp             EEEEEEEECT-TSSSCCEEEEEEEECCSSSCCEEEEEEEEECTTSHHHHHCSCCTTCEEEEETTEECTTCCHHHHHHHHH
T ss_pred             eEEEEEEEeC-CCCCcCEEEeccccCCccccCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHh
Confidence            3578999884 358999999988754321  1258999999999999999999999999999999999999999999999


Q ss_pred             cCCCeEEEEEEeCC
Q psy1156         465 SGPLNMDLLISRTS  478 (671)
Q Consensus       465 ~~g~~V~L~V~R~~  478 (671)
                      ..+..+.|+|.|.+
T Consensus        84 ~~g~~v~l~v~R~g   97 (98)
T 1ihj_A           84 EADFKIELEIQTFD   97 (98)
T ss_dssp             HSCSEEEEEEEEC-
T ss_pred             cCCCeEEEEEEeCC
Confidence            88899999999865

>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI, structural genomics, alternative splicing, cell cycle, cell division, cell junction; NMR {Homo sapiens}

Probab=99.34  E-value=1.1e-11  Score=113.03  Aligned_cols=90  Identities=36%  Similarity=0.607  Sum_probs=76.2

Q ss_pred             ceeeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcC
Q psy1156         575 TFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIK  654 (671)
Q Consensus       575 ~~~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg  654 (671)
                      ....|.+.+..  .+|||.|.++.+...+..|++|..|.++|||+++|+|++||+|++|||++|.++++.+++.+|+..+
T Consensus        30 ~~~~v~l~~~~--~~lG~~l~~~~~~~~g~~gv~V~~V~~gspA~~aG~L~~GD~Il~Ing~~v~~~~~~~~~~~l~~~~  107 (121)
T 2kom_A           30 KRLNIQLKKGT--EGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLVGKSQEEVVSLLRSTK  107 (121)
T ss_dssp             EEEEEEEECCT--TCCCEEEECCCCSSSSSCCEEEEEECTTSHHHHHTCCCSSSEEEEETTEECTTSCHHHHHHHHHHCC
T ss_pred             eEEEEEEEcCC--CcEeEEEEeccCCcCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCC
Confidence            34566776664  7899999987654444568999999999999999999999999999999999999999999999863


Q ss_pred             -CCcEEEEEEeCC
Q psy1156         655 -NGSISLHICRRL  666 (671)
Q Consensus       655 -~~~VtL~V~Rr~  666 (671)
                       ...|.|+|.|+.
T Consensus       108 ~g~~v~l~v~R~g  120 (121)
T 2kom_A          108 MEGTVSLLVFRQE  120 (121)
T ss_dssp             SSCEEEEEEEECC
T ss_pred             CCCEEEEEEEeCC
Confidence             468999998864

>3i4w_A Disks large homolog 4; alpha and beta protein, alternative splicing, cell junction, cell membrane, lipoprotein, membrane, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.36.1.1 PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A

Probab=99.33  E-value=8.9e-12  Score=109.52  Aligned_cols=89  Identities=25%  Similarity=0.377  Sum_probs=78.6

Q ss_pred             CCCCeEEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHH
Q psy1156         384 SQEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSII  463 (671)
Q Consensus       384 ~~~~~~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L  463 (671)
                      .....+.|+|.+..  .+|||.+.++.+.     .|++|..|.++|||+++|.|++||+|++|||+.+.++++.+++.++
T Consensus         8 ~~~~~~~v~l~k~~--~glG~~~~~~~~~-----~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~   80 (104)
T 3i4w_A            8 IPREPRRIVIHRGS--TGLGFNIVGGEXG-----EGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIAL   80 (104)
T ss_dssp             CCSSCEEEEEECBT--TBTSEEEEECC-C-----CCEEEEEECTTSHHHHHCCCCTTEEEEEETTEECTTCCHHHHHHHH
T ss_pred             CCCccEEEEEEeCC--CccCEEEECCCCC-----CCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence            34577899998864  7899999987643     5899999999999999999999999999999999999999999999


Q ss_pred             hcCCCeEEEEEEeCCc
Q psy1156         464 SSGPLNMDLLISRTSL  479 (671)
Q Consensus       464 ~~~g~~V~L~V~R~~~  479 (671)
                      +..+..+.|+|.|.+.
T Consensus        81 ~~~~~~v~l~v~r~~~   96 (104)
T 3i4w_A           81 KNAGQTVTIIAQYKPE   96 (104)
T ss_dssp             HTSCSEEEEEEEECHH
T ss_pred             HcCCCeEEEEEEECcc
Confidence            9888999999998654

>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain, structural genomics, structural genom consortium, SGC, phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1

Probab=99.33  E-value=6.8e-12  Score=113.84  Aligned_cols=91  Identities=24%  Similarity=0.391  Sum_probs=79.1

Q ss_pred             CCeEEEEEEeCCCCCcccEEEeeecCCCC--CCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHH
Q psy1156         386 EGQTMVRVNRRDFNEELGIYIAKIKNSSE--GNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSII  463 (671)
Q Consensus       386 ~~~~~V~L~k~~~~~~LGfsI~gg~~~~~--g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L  463 (671)
                      .+++.|+|.+..  .+|||+|.++.+...  ++ .|++|..|.++|||+++|+|++||+|++|||+.|.++++.+++.++
T Consensus        23 ~~~~~v~l~k~~--~glG~~i~gg~~~~~~~~~-~gv~V~~V~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l   99 (117)
T 2byg_A           23 MTVVEIKLFKGP--KGLGFSIAGGVGNQHIPGD-NSIYVTKIIDGGAAQKDGRLQVGDRLLMVNNYSLEEVTHEEAVAIL   99 (117)
T ss_dssp             EEEEEEEEECBT--TBSSEEEEECTTSCSBTTB-CCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHH
T ss_pred             CceEEEEEEeCC--CCcCEEEEcccCCCCccCC-CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence            356788988754  899999998765321  22 6899999999999999999999999999999999999999999999


Q ss_pred             hcCCCeEEEEEEeCCc
Q psy1156         464 SSGPLNMDLLISRTSL  479 (671)
Q Consensus       464 ~~~g~~V~L~V~R~~~  479 (671)
                      +..+..|.|+|.|.+.
T Consensus       100 ~~~g~~v~l~v~R~~~  115 (117)
T 2byg_A          100 KNTSEVVYLKVGKPTT  115 (117)
T ss_dssp             HTCCSEEEEEEEEEEE
T ss_pred             HcCCCeEEEEEEeCCc
Confidence            9888999999998653

>2jil_A GRIP1 protein, glutamate receptor interacting protein-1; endoplasmic reticulum, postsynaptic membrane, membrane, MEMB protein; 1.5A {Homo sapiens}

Probab=99.33  E-value=9.4e-12  Score=108.18  Aligned_cols=90  Identities=27%  Similarity=0.408  Sum_probs=76.7

Q ss_pred             eEEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhcCC
Q psy1156         388 QTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGP  467 (671)
Q Consensus       388 ~~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~~g  467 (671)
                      .+.|+|.+.  ..+|||++.++.+.......|++|..|.++|||+++|+|++||+|++|||+.+.++++.++..+|+..+
T Consensus         4 ~~~v~l~k~--~~~lG~~i~~~~~~~~~~~~~~~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~g   81 (97)
T 2jil_A            4 TVEVTLHKE--GNTFGFVIRGGAHDDRNKSRPVVITSVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQCG   81 (97)
T ss_dssp             EEEEEEECB--TTBCSEEEEEECCSCC--CEEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHHSC
T ss_pred             EEEEEEEeC--CCccCEEEeCcccCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            466777764  489999999886532111268999999999999999999999999999999999999999999999888


Q ss_pred             CeEEEEEEeCCc
Q psy1156         468 LNMDLLISRTSL  479 (671)
Q Consensus       468 ~~V~L~V~R~~~  479 (671)
                      ..+.|+|.|.+.
T Consensus        82 ~~v~l~v~R~~~   93 (97)
T 2jil_A           82 QEAALLIEYDVS   93 (97)
T ss_dssp             SEEEEEEEEECC
T ss_pred             CeEEEEEEeCCC
Confidence            999999999764

>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex, erbin., signaling protein; 1.25A {Homo sapiens} SCOP: b.36.1.1 PDB: 1mfl_A

Probab=99.33  E-value=8.3e-12  Score=108.25  Aligned_cols=85  Identities=34%  Similarity=0.574  Sum_probs=71.7

Q ss_pred             eeEEEeeCCCCCcccEEEecCCCC---C--CCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHH
Q psy1156         577 HTIVFEKGPGKKGLGFTIVGGKDS---P--RGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFK  651 (671)
Q Consensus       577 ~~V~L~K~~g~~~LGfsL~Gg~ds---~--~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK  651 (671)
                      .+|.+.+.   .+|||.|.++.+.   +  ....|++|..|.++|||++ | |++||+|++|||++|.++++.+++.+++
T Consensus         5 ~~v~l~~~---~~lG~~i~gg~~~~~~p~~~~~~gv~V~~V~~~spA~~-g-L~~GD~I~~vng~~v~~~~~~~~~~~~~   79 (95)
T 1mfg_A            5 IRVRVEKD---PELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK-L-LQPGDKIIQANGYSFINIEHGQAVSLLK   79 (95)
T ss_dssp             EEEEEECS---SSCSEEEEECBTSCCCSSSTTCCCEEEEEECTTSTTTT-T-CCTTCEEEEETTEECTTCBHHHHHHHHH
T ss_pred             EEEEECCC---CCCCEEEeCCcCccCCccccCCCCEEEEEECCCCchhh-C-CCCCCEEEEECCEEcCCCCHHHHHHHhh
Confidence            45677665   4799999997642   1  1345899999999999999 8 9999999999999999999999999998


Q ss_pred             hcCCCcEEEEEEeCCC
Q psy1156         652 TIKNGSISLHICRRLK  667 (671)
Q Consensus       652 ~sg~~~VtL~V~Rr~~  667 (671)
                      ..+ ..|.|+|.|+..
T Consensus        80 ~~~-~~v~l~v~R~~~   94 (95)
T 1mfg_A           80 TFQ-NTVELIIVREVS   94 (95)
T ss_dssp             HCC-SEEEEEEEEECC
T ss_pred             cCC-CeEEEEEEeCCC
Confidence            764 789999998754

>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker, structural genomics, struc genomics consortium, SGC, structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1

Probab=99.33  E-value=1.1e-11  Score=108.92  Aligned_cols=91  Identities=27%  Similarity=0.509  Sum_probs=74.0

Q ss_pred             eeeEEEeeCCCCCcccEEEecCCCCCC------CCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHH
Q psy1156         576 FHTIVFEKGPGKKGLGFTIVGGKDSPR------GAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISL  649 (671)
Q Consensus       576 ~~~V~L~K~~g~~~LGfsL~Gg~ds~~------g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~l  649 (671)
                      .++|.|.+.. ...|||.+.++.+...      ...|++|..|.++|||+++|+|++||+|++|||++|.++++.+++.+
T Consensus         5 p~~v~l~~~~-~~~lG~~~~~~~~~~~~~~~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~   83 (103)
T 2fcf_A            5 PRRVELWREP-SKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEA   83 (103)
T ss_dssp             CEEEEECCCC--CCCCEEEECCCC-------------EEEEEECSSSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHH
T ss_pred             CEEEEEEeCC-CCceeEEEEccCCCCcccccCCCCCCEEEEEeCCCCcHHHcCCCCCCCEEEEECCEECCCCCHHHHHHH
Confidence            3578888765 4689999988654321      12589999999999999999999999999999999999999999999


Q ss_pred             HHhcCCCcEEEEEEeCCCC
Q psy1156         650 FKTIKNGSISLHICRRLKS  668 (671)
Q Consensus       650 LK~sg~~~VtL~V~Rr~~~  668 (671)
                      |+..+ +.|.|+|.|..+.
T Consensus        84 l~~~~-~~v~l~v~r~~~~  101 (103)
T 2fcf_A           84 IRKAG-NPVVFMVQSIIST  101 (103)
T ss_dssp             HHTCC-SSEEEEEECCCCC
T ss_pred             HHhCC-CcEEEEEEECCCC
Confidence            99885 6999999987654

>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.33  E-value=4.8e-12  Score=111.32  Aligned_cols=85  Identities=26%  Similarity=0.439  Sum_probs=74.6

Q ss_pred             ceeeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcC
Q psy1156         575 TFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIK  654 (671)
Q Consensus       575 ~~~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg  654 (671)
                      ..+.|+|.+..  .+|||.+.++.+.    .|++|..|.++|||+++| |++||+|++|||++|.++++.+++.+|+..+
T Consensus         6 ~~r~v~l~k~~--~g~G~~l~~~~~~----~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~g   78 (102)
T 2d90_A            6 SGRVVVIKKGS--NGYGFYLRAGPEQ----KGQIIKDIEPGSPAEAAG-LKNNDLVVAVNGKSVEALDHDGVVEMIRKGG   78 (102)
T ss_dssp             SSEEEEEECCS--SSSSCEEEECSSS----SSEEEECCCTTSTTTTTT-CCTTCEEEEESSCBCTTSCHHHHHHHHHHST
T ss_pred             CCEEEEEeeCC--CCccEEEEeecCC----CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            34689999876  7999999975442    489999999999999999 9999999999999999999999999998864


Q ss_pred             CCcEEEEEEeCCC
Q psy1156         655 NGSISLHICRRLK  667 (671)
Q Consensus       655 ~~~VtL~V~Rr~~  667 (671)
                       ..|.|+|.|+..
T Consensus        79 -~~v~l~v~r~~~   90 (102)
T 2d90_A           79 -DQTTLLVLDKEA   90 (102)
T ss_dssp             -TEEEEEECSTTC
T ss_pred             -CEEEEEEEECCC
Confidence             789999988754

>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.33  E-value=1e-11  Score=112.44  Aligned_cols=92  Identities=20%  Similarity=0.344  Sum_probs=80.3

Q ss_pred             CCCeEEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHh
Q psy1156         385 QEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIIS  464 (671)
Q Consensus       385 ~~~~~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~  464 (671)
                      ..+.+.|.|.+. .+.+|||.+.++.+..  . .+++|..|.+++||+++|+|++||+|++|||+.|.++++.+++.+|+
T Consensus        13 ~~~~~~v~l~k~-~~~~lG~~i~~~~~~~--~-~~~~V~~V~~~spA~~aG~l~~GD~Il~Ing~~v~~~~~~~~~~~l~   88 (117)
T 1v62_A           13 ASGPLMVEIVKT-PGSALGISLTTTSLRN--K-SVITIDRIKPASVVDRSGALHPGDHILSIDGTSMEHCSLLEATKLLA   88 (117)
T ss_dssp             SSSSEEEEEECC-TTCCCCCEEEEECCSS--S-CEEEEEECCTTSHHHHHTCCCTTCBEEEETTEETTSCCHHHHHHHHH
T ss_pred             CCCcEEEEEEcC-CCCcccEEEEccCCCC--C-CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            456789999885 4689999999875432  1 35999999999999999999999999999999999999999999999


Q ss_pred             cCCCeEEEEEEeCCcc
Q psy1156         465 SGPLNMDLLISRTSLK  480 (671)
Q Consensus       465 ~~g~~V~L~V~R~~~~  480 (671)
                      ..+..|.|+|.|....
T Consensus        89 ~~g~~v~l~v~r~~~~  104 (117)
T 1v62_A           89 SISEKVRLEILPVPQS  104 (117)
T ss_dssp             SCSSEEEEEECCBTTB
T ss_pred             hCCCeEEEEEEECCCC
Confidence            8889999999987653

>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=99.33  E-value=6.1e-12  Score=113.02  Aligned_cols=88  Identities=39%  Similarity=0.608  Sum_probs=76.6

Q ss_pred             eeeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcCC
Q psy1156         576 FHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKN  655 (671)
Q Consensus       576 ~~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg~  655 (671)
                      .+.|.|.+..  .+|||.|.++.+..  ..|++|..|.++|||+++|+|++||+|++|||++|.++++.+++.+|+..+ 
T Consensus        18 ~~~v~l~~~~--~glG~~l~~~~~~~--~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~l~~~~-   92 (116)
T 2dm8_A           18 EMIIEISKGR--SGLGLSIVGGKDTP--LNAIVIHEVYEEGAAARDGRLWAGDQILEVNGVDLRNSSHEEAITALRQTP-   92 (116)
T ss_dssp             CEEEEEECCS--SCCCCCCBCCTTSS--CSSEECCCCCSSSHHHHHTCCCTTCEEEEETTEECSSSCHHHHHHHHHTCC-
T ss_pred             EEEEEEEECC--CcccEEEeCCCCCC--cCCEEEEEECCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC-
Confidence            4678887775  89999999876542  148999999999999999999999999999999999999999999999875 


Q ss_pred             CcEEEEEEeCCCC
Q psy1156         656 GSISLHICRRLKS  668 (671)
Q Consensus       656 ~~VtL~V~Rr~~~  668 (671)
                      ..|.|+|.|+...
T Consensus        93 ~~v~l~v~R~~~~  105 (116)
T 2dm8_A           93 QKVRLVVYRDEAH  105 (116)
T ss_dssp             SEEEEEEECCSSC
T ss_pred             CeEEEEEEeCCcc
Confidence            7899999987653

>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain, ptpase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.32  E-value=3e-12  Score=115.82  Aligned_cols=89  Identities=22%  Similarity=0.365  Sum_probs=76.1

Q ss_pred             ceeeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHh-CCCCCCCEEEEECCeecCCCCHHHHHHHHHhc
Q psy1156         575 TFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAED-GRLKEGDEILAINGQVCHDLTHLEAISLFKTI  653 (671)
Q Consensus       575 ~~~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAara-GrLr~GDrILeVNG~sV~~lSheEAV~lLK~s  653 (671)
                      ..+.|.|.|.. .++|||.|.++.+..   .|++|..|.++|||+++ |.|++||+|++|||++|.+++|.+++.+++..
T Consensus        15 ~~~~v~l~k~~-~~~~G~~l~gg~~~~---~~v~V~~V~~~spA~~a~gGL~~GD~Il~ing~~v~~~~~~~~~~~~~~~   90 (119)
T 2cs5_A           15 NLVLIRMKPDE-NGRFGFNVKGGYDQK---MPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIKAS   90 (119)
T ss_dssp             CCEEEEECCCS-SSCCSEEEEEEGGGT---EEEEEEEECSSSTTTSSSSCCCTTCEEEEETTBCTTSSCHHHHHHHHHHH
T ss_pred             CeEEEEEEeCC-CCCcCEEEecccCCC---CCeEEEEECCCCHHHHhhcCCCCCCEEEEECCEECCCCCHHHHHHHHHhc
Confidence            45689998876 367999999886542   47999999999999999 33999999999999999999999999999987


Q ss_pred             CC---CcEEEEEEeCCC
Q psy1156         654 KN---GSISLHICRRLK  667 (671)
Q Consensus       654 g~---~~VtL~V~Rr~~  667 (671)
                      +.   ..|.|+|.|+..
T Consensus        91 ~~~~~~~v~l~v~R~~~  107 (119)
T 2cs5_A           91 CERHSGELMLLVRPNAV  107 (119)
T ss_dssp             HHCCSSCEEEEEECCCC
T ss_pred             cccCCCEEEEEEEcccc
Confidence            42   479999998764

>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic domain associated protein, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.32  E-value=9.8e-12  Score=110.39  Aligned_cols=93  Identities=28%  Similarity=0.347  Sum_probs=78.2

Q ss_pred             CCCeEEEEEEeCCCCCcccEEEeeecCCC----CCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHH
Q psy1156         385 QEGQTMVRVNRRDFNEELGIYIAKIKNSS----EGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAK  460 (671)
Q Consensus       385 ~~~~~~V~L~k~~~~~~LGfsI~gg~~~~----~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av  460 (671)
                      +...+.|.|.|.  ..+|||+|.++.+..    .....|++|..|.++|||+++|.|++||+|++|||+.|.++++.+++
T Consensus         6 ~~~~~~v~l~k~--~~~lG~~i~g~~~~~~~~~~~~~~gv~V~~V~~~spA~~aggL~~GD~Il~vng~~v~~~~~~~~~   83 (107)
T 1uhp_A            6 SGKSLTLVLHRD--SGSLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRIIEVNGRDLSRATHDQAV   83 (107)
T ss_dssp             SSEEEEEEECCS--SSCCSEEEECCCSCCCCTTSSCSCCCEEEEECSSSHHHHTTCCCSSCEEEEETTEECTTCCHHHHH
T ss_pred             CcEEEEEEEEeC--CCccCEEEEcCCCCcccccccCCCCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHH
Confidence            456788888875  589999999876421    01126899999999999999933999999999999999999999999


Q ss_pred             HHHhcCCCeEEEEEEeCCc
Q psy1156         461 SIISSGPLNMDLLISRTSL  479 (671)
Q Consensus       461 ~~L~~~g~~V~L~V~R~~~  479 (671)
                      .+++..+..+.|+|.|...
T Consensus        84 ~~~~~~~~~v~l~v~R~~~  102 (107)
T 1uhp_A           84 EAFKTAKEPIVVQVLRRTS  102 (107)
T ss_dssp             HHHHHCCSSEEEEEEECCS
T ss_pred             HHHHcCCCcEEEEEEeCCC
Confidence            9999888999999998654

>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti density, glutametergic receptors, carbohydrate metabolism, cycle, cell division; HET: MES; 1.85A {Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A

Probab=99.32  E-value=7.6e-12  Score=121.24  Aligned_cols=90  Identities=24%  Similarity=0.385  Sum_probs=77.6

Q ss_pred             CCCeEEEEEEeCCCCCcccEEEee---ecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHH
Q psy1156         385 QEGQTMVRVNRRDFNEELGIYIAK---IKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKS  461 (671)
Q Consensus       385 ~~~~~~V~L~k~~~~~~LGfsI~g---g~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~  461 (671)
                      ...++.|.|.+..  .+|||+|.+   +.....+. .|++|..|.+||||+++|+|++||+|++|||+.|.++++.+++.
T Consensus        78 ~~~~~~v~l~k~~--~glG~~i~g~~~g~~~~~~~-~gi~V~~V~~gspA~~aG~L~~GD~Il~VNG~~v~~~~~~~~~~  154 (170)
T 3egg_C           78 RLELFPVELEKDS--EGLGISIIGMGAGADMGLEK-LGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAAS  154 (170)
T ss_dssp             TSEEEEEEEECBT--TBSSEEEEEECSSSSCCSSS-BEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTBCHHHHHH
T ss_pred             CceEEEEEEEeCC--CeEeEEEEecccCCccccCC-CCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHH
Confidence            3456788888754  789999998   33322233 78999999999999999999999999999999999999999999


Q ss_pred             HHhcCCCeEEEEEEeC
Q psy1156         462 IISSGPLNMDLLISRT  477 (671)
Q Consensus       462 ~L~~~g~~V~L~V~R~  477 (671)
                      +|+.++..|.|+|.|.
T Consensus       155 ~l~~~g~~v~L~V~R~  170 (170)
T 3egg_C          155 VLRNTKGRVRFMIGRE  170 (170)
T ss_dssp             HHHHCCSEEEEEEEEC
T ss_pred             HHHcCCCEEEEEEEeC
Confidence            9999899999999884

>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A

Probab=99.32  E-value=1.4e-11  Score=107.30  Aligned_cols=88  Identities=24%  Similarity=0.443  Sum_probs=76.8

Q ss_pred             CCeEEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhc
Q psy1156         386 EGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISS  465 (671)
Q Consensus       386 ~~~~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~  465 (671)
                      ...+.|.|.+.  .++|||++.++.+..    .+++|..|.+++||+++|.|++||+|++|||+.+.++++.++..+++.
T Consensus         4 ~~~~~v~l~~~--~~~lG~~i~~~~~~~----~~~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~   77 (97)
T 1n7e_A            4 AIIYTVELKRY--GGPLGITISGTEEPF----DPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQM   77 (97)
T ss_dssp             CCEEEEEEECT--TSCCCEEEECCSSTT----SCCEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHT
T ss_pred             ceEEEEEEEeC--CCCcCEEEEcccCCC----CCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHc
Confidence            35678888654  478999999765432    689999999999999999999999999999999999999999999987


Q ss_pred             CCCeEEEEEEeCCc
Q psy1156         466 GPLNMDLLISRTSL  479 (671)
Q Consensus       466 ~g~~V~L~V~R~~~  479 (671)
                      .+..+.|+|.|.+.
T Consensus        78 ~g~~v~l~v~R~~~   91 (97)
T 1n7e_A           78 AGETVTLKIKKQTD   91 (97)
T ss_dssp             CCSEEEEEEECCCC
T ss_pred             CCCeEEEEEEeCCC
Confidence            78899999998765

>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog, phosphorylation, signaling PR LIM domain, PDZ domain; 1.5A {Homo sapiens}

Probab=99.32  E-value=1.1e-11  Score=105.86  Aligned_cols=84  Identities=19%  Similarity=0.318  Sum_probs=73.5

Q ss_pred             eEEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhcCC
Q psy1156         388 QTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGP  467 (671)
Q Consensus       388 ~~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~~g  467 (671)
                      .+.|+| +.  ..+|||++.++.+..    .+++|..|.++|||+++| |++||+|++|||+.+.++++.++..+++..+
T Consensus         4 ~~~v~l-~~--~~~~G~~l~~g~~~~----~~~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~~~~~g   75 (88)
T 2uzc_A            4 NYSVSL-VG--PAPWGFRLQGGKDFN----MPLTISSLKDGGKAAQAN-VRIGDVVLSIDGINAQGMTHLEAQNKIKGCT   75 (88)
T ss_dssp             EEEEEE-ES--SSCCCEEEEEEGGGT----EEEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHHTCC
T ss_pred             EEEEEE-cC--CCcccEEEECcCCCC----CCeEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence            466777 43  379999999887643    689999999999999999 9999999999999999999999999998778


Q ss_pred             CeEEEEEEeCCc
Q psy1156         468 LNMDLLISRTSL  479 (671)
Q Consensus       468 ~~V~L~V~R~~~  479 (671)
                      ..+.|+|.|.+.
T Consensus        76 ~~v~l~v~R~g~   87 (88)
T 2uzc_A           76 GSLNMTLQRESD   87 (88)
T ss_dssp             SEEEEEEECCCC
T ss_pred             CeEEEEEEeCCC
Confidence            899999998653

>3sfj_A TAX1-binding protein 3; PDZ:peptide complex, signaling protein-inhibitor complex; 1.24A {Homo sapiens} PDB: 3dj3_A

Probab=99.32  E-value=8.3e-12  Score=109.87  Aligned_cols=87  Identities=28%  Similarity=0.413  Sum_probs=71.1

Q ss_pred             eEEEeeCC--CCCcccEEEecCCCCC---------CCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHH
Q psy1156         578 TIVFEKGP--GKKGLGFTIVGGKDSP---------RGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEA  646 (671)
Q Consensus       578 ~V~L~K~~--g~~~LGfsL~Gg~ds~---------~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEA  646 (671)
                      .|.+.+..  ...+|||++.|+.+..         ....|++|..|.++|||+++| |++||+|++|||+++.+++|.++
T Consensus         7 ~i~~~~~~~~~~~~lG~~i~g~~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~   85 (104)
T 3sfj_A            7 RVEIHKLRQGENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAG-LQIGDKIMQVNGWDMTMVTHDQA   85 (104)
T ss_dssp             EEEEECEEETTEEECSEEEEECTTSCGGGCSSCSSTTCCSEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHH
T ss_pred             EEEEEEccCCCCCcccEEEECccccCccccccccCCCCCCEEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCCHHHH
Confidence            34444432  2246999999876642         234689999999999999999 99999999999999999999999


Q ss_pred             HHHHHhcCCCcEEEEEEeC
Q psy1156         647 ISLFKTIKNGSISLHICRR  665 (671)
Q Consensus       647 V~lLK~sg~~~VtL~V~Rr  665 (671)
                      +.+|+..+...|.|+|.|+
T Consensus        86 ~~~l~~~~g~~v~l~v~R~  104 (104)
T 3sfj_A           86 RKRLTKRSEEVVRLLVTRQ  104 (104)
T ss_dssp             HHHHTCTTCSEEEEEEEEC
T ss_pred             HHHHHhCCCCEEEEEEEcC
Confidence            9999875546899999885

>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.32  E-value=1.2e-11  Score=111.91  Aligned_cols=94  Identities=27%  Similarity=0.320  Sum_probs=80.0

Q ss_pred             CCeEEEEEEeCC-----CCCcccEEEeeecCCCC--CCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHH
Q psy1156         386 EGQTMVRVNRRD-----FNEELGIYIAKIKNSSE--GNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQ  458 (671)
Q Consensus       386 ~~~~~V~L~k~~-----~~~~LGfsI~gg~~~~~--g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~  458 (671)
                      -.++.|+|.+..     ...+|||+|.++.+.+.  +. .|++|..|.++|||+++|+|++||+|++|||+++.++++.+
T Consensus        11 ~~~~~v~l~r~~~~~~~~~~glG~~i~g~~~~~~~~~~-~g~~V~~v~~~s~A~~aG~L~~GD~Il~vng~~v~~~~~~~   89 (117)
T 1ujd_A           11 FPHARIKITRDSKDHTVSGNGLGIRIVGGKEIPGHSGE-IGAYIAKILPGGSAEQTGKLMEGMQVLEWNGIPLTSKTYEE   89 (117)
T ss_dssp             SCEEEEEECCCSSSSCSSCCSCSEEEEEEEECSSSSSC-EEEEEEEECTTCHHHHHSSCCTTCEEEEETTEECTTCCHHH
T ss_pred             CceEEEEEEecCcccCCCCCcccEEEeCCCCCCcccCC-cCEEEEEECCCCHHHHcCCCCCCCEEEEECCEEcCCCCHHH
Confidence            355778887743     24799999999875431  12 58999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCeEEEEEEeCCcc
Q psy1156         459 AKSIISSGPLNMDLLISRTSLK  480 (671)
Q Consensus       459 av~~L~~~g~~V~L~V~R~~~~  480 (671)
                      ++.+|+..+..|.|+|.|.+..
T Consensus        90 ~~~~l~~~~~~v~l~v~R~~~~  111 (117)
T 1ujd_A           90 VQSIISQQSGEAEICVRLDLNM  111 (117)
T ss_dssp             HHHHHSCCSSCEEEEEESSCCC
T ss_pred             HHHHHhcCCCEEEEEEEECCcc
Confidence            9999998889999999997653

>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling protein; NMR {Homo sapiens}

Probab=99.32  E-value=2.3e-12  Score=109.11  Aligned_cols=80  Identities=24%  Similarity=0.458  Sum_probs=71.0

Q ss_pred             eeeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcCC
Q psy1156         576 FHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKN  655 (671)
Q Consensus       576 ~~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg~  655 (671)
                      .+.|.|.+..  .+|||.+.+.       .|++|..|.++|||+++| |++||+|++|||+++.+++|.+++.+|+..+ 
T Consensus         3 ~r~v~l~~~~--~g~G~~~~~~-------~~~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~-   71 (83)
T 2kv8_A            3 VRSVEVARGR--AGYGFTLSGQ-------APCVLSCVMRGSPADFVG-LRAGDQILAVNEINVKKASHEDVVKLIGKCS-   71 (83)
T ss_dssp             EEEEEECCCS--SCCSCBCCCS-------SSCBCCBCCTTSTTTTTT-CCTTCEEEEETTEECSSCCHHHHHHHHTTCS-
T ss_pred             cEEEEEEeCC--CcccEEEEcC-------CCeEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCC-
Confidence            4678998886  7899998754       378999999999999999 9999999999999999999999999998774 


Q ss_pred             CcEEEEEEeCC
Q psy1156         656 GSISLHICRRL  666 (671)
Q Consensus       656 ~~VtL~V~Rr~  666 (671)
                      ..|.|+|.|..
T Consensus        72 ~~v~l~v~R~~   82 (83)
T 2kv8_A           72 GVLHMVIAEGV   82 (83)
T ss_dssp             SCEEEEEECCC
T ss_pred             CeEEEEEEcCC
Confidence            67999998864

>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI, signaling protein; 1.80A {Mus musculus} SCOP: b.36.1.0

Probab=99.32  E-value=7.4e-12  Score=110.70  Aligned_cols=83  Identities=25%  Similarity=0.379  Sum_probs=73.2

Q ss_pred             eeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcCCC
Q psy1156         577 HTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKNG  656 (671)
Q Consensus       577 ~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg~~  656 (671)
                      +.|.|.+.+ ...|||.+..+.+.    .|++|..|.++|||+++| |++||+|++|||++|.+++|.+++.+|+..+ .
T Consensus         3 r~v~l~~~~-~~~~G~~l~~~~~~----~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~g-~   75 (106)
T 3ngh_A            3 RESKLSKQE-GQNYGFFLRIEKDT----DGHLIRVIEEGSPAEKAG-LLDGDRVLRINGVFVDKEEHAQVVELVRKSG-N   75 (106)
T ss_dssp             EEEEEECCT-TCCCCCEEECCTTC----CSCEEECCCTTSHHHHTT-CCTTCEEEEETTEECTTSCHHHHHHHHHHTT-T
T ss_pred             EEEEEEeCC-CCeeCEEEEEEeCC----CCEEEEEeCCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCC-C
Confidence            578888886 37899999877553    489999999999999999 9999999999999999999999999998764 7


Q ss_pred             cEEEEEEeCC
Q psy1156         657 SISLHICRRL  666 (671)
Q Consensus       657 ~VtL~V~Rr~  666 (671)
                      .|.|+|.|+.
T Consensus        76 ~v~l~v~r~~   85 (106)
T 3ngh_A           76 SVTLLVLDGD   85 (106)
T ss_dssp             EEEEEEECHH
T ss_pred             EEEEEEEECC
Confidence            8999998864

>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand, cytoplasm, developmental protein, phosphoprotein, WNT signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A 3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A

Probab=99.32  E-value=3.6e-12  Score=113.85  Aligned_cols=90  Identities=24%  Similarity=0.401  Sum_probs=77.4

Q ss_pred             CeEEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhcC
Q psy1156         387 GQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSG  466 (671)
Q Consensus       387 ~~~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~~  466 (671)
                      ++++|.|.+. ...+|||+|.++.+. .+. .|++|..|.++|||+++|+|++||+|++|||+++.++++.+++.+|+..
T Consensus         5 ~~~~v~l~k~-~~~~lG~~i~g~~~~-~~~-~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~   81 (108)
T 3cbz_A            5 NIITVTLNME-KYNFLGISIVGQSNE-RGD-GGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRVLRDI   81 (108)
T ss_dssp             CEEEEEECHH-HHCCCCEEEEEECSS-TTC-CEEEEEEECTTSHHHHHCCCCTTCEEEEETTEETTSCCHHHHHHHHHHH
T ss_pred             eEEEEEEEeC-CCCccCEEEEcCcCC-CCC-CCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhc
Confidence            6788999873 358999999997642 122 7899999999999999999999999999999999999999999999855


Q ss_pred             ---CCeEEEEEEeCCc
Q psy1156         467 ---PLNMDLLISRTSL  479 (671)
Q Consensus       467 ---g~~V~L~V~R~~~  479 (671)
                         ++.|.|+|.|...
T Consensus        82 ~~~~~~v~l~v~R~~~   97 (108)
T 3cbz_A           82 VHKPGPIVLTVAKSGG   97 (108)
T ss_dssp             HTSSSCEEEEEECCCC
T ss_pred             ccCCCeEEEEEEeCCC
Confidence               5679999998654

>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing protein 3; structural genomics consortium, SGC, PDZ domain, signaling P; 1.60A {Homo sapiens}

Probab=99.32  E-value=8e-12  Score=113.61  Aligned_cols=83  Identities=36%  Similarity=0.520  Sum_probs=70.8

Q ss_pred             ceeeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcC
Q psy1156         575 TFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIK  654 (671)
Q Consensus       575 ~~~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg  654 (671)
                      +.++|+|.|+.  .+|||+|.++.      .|.+|..|.+  +|..+| |++||+|++|||++|.+++|.+++++|+.++
T Consensus        12 ~~~~V~L~Kg~--~G~GFsI~~~~------~g~~V~~I~~--~~~~aG-L~~GD~Il~VNG~~v~~~~h~evv~~lk~~~   80 (113)
T 3soe_A           12 LLVTIPLIKGP--KGFGFAIADSP------TGQKVKMILD--SQWCQG-LQKGDIIKEIYHQNVQNLTHLQVVEVLKQFP   80 (113)
T ss_dssp             EEEEEEEECBT--TBSSEEEEEET------TEEEEEEESC--GGGSTT-CCTTCEEEEETTEECTTSCHHHHHHHHHHSC
T ss_pred             CEEEEEEEECC--CcccEEEeCCC------CCcEEEEecC--hHHhCC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            56789999986  79999997553      3788999998  465666 9999999999999999999999999999875


Q ss_pred             -CCcEEEEEEeCCCC
Q psy1156         655 -NGSISLHICRRLKS  668 (671)
Q Consensus       655 -~~~VtL~V~Rr~~~  668 (671)
                       ...|+|+|.|....
T Consensus        81 ~G~~v~L~V~R~g~~   95 (113)
T 3soe_A           81 VGADVPLLILRGGPP   95 (113)
T ss_dssp             TTCEEEEEEEESSCC
T ss_pred             CCCEEEEEEEECCcc
Confidence             35799999998754

>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics, structural genomics consort unknown function; HET: PG4; 1.50A {Homo sapiens} PDB: 2v1w_A*

Probab=99.32  E-value=9.4e-12  Score=107.06  Aligned_cols=84  Identities=31%  Similarity=0.423  Sum_probs=72.2

Q ss_pred             eeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcCCC
Q psy1156         577 HTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKNG  656 (671)
Q Consensus       577 ~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg~~  656 (671)
                      +.|.+...   .+|||.+.++.+..   .|++|..|.++|||+++| |++||+|++|||+++.++++.+++.+|+.. ..
T Consensus         5 ~~v~~~~~---~~~G~~l~~~~~~~---~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~-g~   76 (91)
T 2pkt_A            5 QQIDLQGP---GPWGFRLVGGKDFE---QPLAISRVTPGSKAALAN-LCIGDVITAIDGENTSNMTHLEAQNRIKGC-TD   76 (91)
T ss_dssp             EEEEEESS---SCCSEEEEEEGGGT---EEEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHHTC-SS
T ss_pred             EEEEECCC---CCCCEEEEccCCCC---CCeEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcC-CC
Confidence            45666532   78999999876542   589999999999999999 999999999999999999999999999984 57


Q ss_pred             cEEEEEEeCCCC
Q psy1156         657 SISLHICRRLKS  668 (671)
Q Consensus       657 ~VtL~V~Rr~~~  668 (671)
                      .|.|+|.|+...
T Consensus        77 ~v~l~v~R~g~~   88 (91)
T 2pkt_A           77 NLTLTVARSEHE   88 (91)
T ss_dssp             EEEEEEEEECCC
T ss_pred             eEEEEEEECCcc
Confidence            899999998754

>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A 2ocs_A

Probab=99.32  E-value=1.4e-11  Score=105.88  Aligned_cols=83  Identities=24%  Similarity=0.295  Sum_probs=72.7

Q ss_pred             CeEEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhcC
Q psy1156         387 GQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSG  466 (671)
Q Consensus       387 ~~~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~~  466 (671)
                      .+++|+|.|..  .+|||++.++.+.     .|++|..|.++|||+++| |++||+|++|||+++.++++.+++.+++..
T Consensus         3 ~~r~v~l~r~~--~g~G~~~~~~~~~-----~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~l~~~   74 (91)
T 1g9o_A            3 LPRLCCLEKGP--NGYGFHLHGEKGK-----LGQYIRLVEPGSPAEKAG-LLAGDRLVEVNGENVEKETHQQVVSRIRAA   74 (91)
T ss_dssp             CCEEEEEECBT--TBCCEEEEECTTC-----SSEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHHTC
T ss_pred             ccEEEEEEeCC--CcccEEEEecCCC-----CCEEEEEECCCCHHHHCC-CCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence            45889998865  6899999987643     689999999999999999 999999999999999999999999999977


Q ss_pred             CCeEEEEEEeC
Q psy1156         467 PLNMDLLISRT  477 (671)
Q Consensus       467 g~~V~L~V~R~  477 (671)
                      ++.+.+++.+.
T Consensus        75 ~~~~~~~~~~r   85 (91)
T 1g9o_A           75 LNAVRLLVVDP   85 (91)
T ss_dssp             SSEEEEEEECC
T ss_pred             CCcEEEEEEcC
Confidence            77777766654

>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.32  E-value=7.8e-12  Score=108.51  Aligned_cols=84  Identities=32%  Similarity=0.477  Sum_probs=72.3

Q ss_pred             eeeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcCC
Q psy1156         576 FHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKN  655 (671)
Q Consensus       576 ~~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg~  655 (671)
                      .+.|+|. +.  .+|||.+.++.+..   .|++|..|.+++||+++| |++||+|++|||++|.++++.+++.+++..+ 
T Consensus         9 ~~~v~l~-~~--~~~G~~l~gg~~~~---~~v~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~~~~~g-   80 (94)
T 2eeg_A            9 PHSVTLR-GP--SPWGFRLVGGRDFS---APLTISRVHAGSKAALAA-LCPGDLIQAINGESTELMTHLEAQNRIKGCH-   80 (94)
T ss_dssp             CEEEEEC-CS--SCCSCCEECCTTTT---SCCEECCCCSSSHHHHTT-CCTTCEEEEETTEETTTCCHHHHHHHHHTCC-
T ss_pred             eEEEEEe-CC--CccCEEEECccCCC---CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCC-
Confidence            4567773 33  68999999987653   579999999999999999 9999999999999999999999999998854 


Q ss_pred             CcEEEEEEeCCC
Q psy1156         656 GSISLHICRRLK  667 (671)
Q Consensus       656 ~~VtL~V~Rr~~  667 (671)
                      ..|.|+|.|+..
T Consensus        81 ~~v~l~v~R~g~   92 (94)
T 2eeg_A           81 DHLTLSVSSGPS   92 (94)
T ss_dssp             SCEEEEEECCSS
T ss_pred             CeEEEEEEeCCC
Confidence            789999988754

>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.32  E-value=1.1e-11  Score=111.34  Aligned_cols=90  Identities=30%  Similarity=0.509  Sum_probs=76.0

Q ss_pred             ceeeEEEeeCCCCCcccEEEecCCCCCC-CC---cceeEEEeCCCCHHhH-hCCCCCCCEEEEECCeecCCCCHHHHHHH
Q psy1156         575 TFHTIVFEKGPGKKGLGFTIVGGKDSPR-GA---IGIFIKSILDNGQAAE-DGRLKEGDEILAINGQVCHDLTHLEAISL  649 (671)
Q Consensus       575 ~~~~V~L~K~~g~~~LGfsL~Gg~ds~~-g~---~GVfIssV~pgSpAar-aGrLr~GDrILeVNG~sV~~lSheEAV~l  649 (671)
                      ..+.|.|.+.. ..+|||.|.++.+... +.   .+++|..|.++|||++ +| |++||+|++|||++|.+++|.+++.+
T Consensus        10 ~~~~v~l~~~~-~~~lGf~l~~~~~~~~~g~~~~~~~~V~~V~~~spA~~~ag-L~~GD~I~~ing~~v~~~~~~~~~~~   87 (114)
T 1uew_A           10 QTSDVVIHRKE-NEGFGFVIISSLNRPESGSTITVPHKIGRIIDGSPADRCAK-LKVGDRILAVNGQSIINMPHADIVKL   87 (114)
T ss_dssp             CCEEEEEECCT-TSCCCEEEECCCCSCCSSCCSCCSCEEEEECTTCTTGGGSS-CCTTCBEEEETTBCTTTSCHHHHHHH
T ss_pred             cceEEEEEECC-CCCCCEEEEeecccCCCCcccccCeEEEEECCCChHHHhCC-CCCCCEEEEECCEECCCCCHHHHHHH
Confidence            45688898865 3799999998765432 11   2689999999999999 88 99999999999999999999999999


Q ss_pred             HHhcCCCcEEEEEEeCCC
Q psy1156         650 FKTIKNGSISLHICRRLK  667 (671)
Q Consensus       650 LK~sg~~~VtL~V~Rr~~  667 (671)
                      |+.. ...|.|+|.|+..
T Consensus        88 l~~~-g~~v~l~v~r~~~  104 (114)
T 1uew_A           88 IKDA-GLSVTLRIIPQEE  104 (114)
T ss_dssp             HHHT-TTEEEEEECCCSC
T ss_pred             HHcC-CCeEEEEEEeCCc
Confidence            9985 4789999988764

>2o2t_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 2.70A {Homo sapiens}

Probab=99.32  E-value=4.9e-12  Score=113.98  Aligned_cols=94  Identities=28%  Similarity=0.433  Sum_probs=81.4

Q ss_pred             CCCeEEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeecc-CCCHHHHHHHH
Q psy1156         385 QEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLR-GLTMTQAKSII  463 (671)
Q Consensus       385 ~~~~~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~-~~s~~~av~~L  463 (671)
                      ...++.|.|.+. ++++|||++.++.....+. .|++|..|.++|||+++|+|++||+|++|||+.+. ++++.+++.++
T Consensus        18 ~~~~~~v~l~k~-~~~~lG~~i~~~~~~~~~~-~gv~V~~V~~~spA~~aG~l~~GD~Il~ing~~v~~~~~~~~~~~~l   95 (117)
T 2o2t_A           18 GRHVEVFELLKP-PSGGLGFSVVGLRSENRGE-LGIFVQEIQEGSVAHRDGRLKETDQILAINGQALDQTITHQQAISIL   95 (117)
T ss_dssp             TSCEEEEEEECC-SSSCSSCCEEEEECCC--C-EEEEECCCCTTSHHHHHCCCCTTCEEEEETTEECCTTSCHHHHHHHH
T ss_pred             CCeEEEEEEEEC-CCCCCCEEEeecccCCCCC-CCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCCHHHHHHHH
Confidence            357789999885 3689999999887543333 68999999999999999999999999999999998 99999999999


Q ss_pred             hcCCCeEEEEEEeCCcc
Q psy1156         464 SSGPLNMDLLISRTSLK  480 (671)
Q Consensus       464 ~~~g~~V~L~V~R~~~~  480 (671)
                      +..+..|.|+|.|.+..
T Consensus        96 ~~~~~~v~l~v~R~~~~  112 (117)
T 2o2t_A           96 QKAKDTVQLVIARGSLP  112 (117)
T ss_dssp             HHCCSEEEEEEESSCCG
T ss_pred             HcCCCEEEEEEEeCCcc
Confidence            98889999999997653

>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ domain, PDZ2, acetylation, cell projection, membrane, polymorphism; NMR {Homo sapiens}

Probab=99.32  E-value=6e-12  Score=109.75  Aligned_cols=83  Identities=27%  Similarity=0.444  Sum_probs=71.1

Q ss_pred             eeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcCCC
Q psy1156         577 HTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKNG  656 (671)
Q Consensus       577 ~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg~~  656 (671)
                      +.+.+.+..  .+|||.+.++.+.    .|++|..|.++|||+++| |++||+|++|||++|.++++.+++.+|+..+..
T Consensus        11 ~~~~l~~~~--~g~G~~~~~~~~~----~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~   83 (98)
T 2jxo_A           11 RLCTMKKGP--SGYGFNLHSDKSK----PGQFIRSVDPDSPAEASG-LRAQDRIVEVNGVCMEGKQHGDVVSAIRAGGDE   83 (98)
T ss_dssp             EEEEEECTT--TCCCEEEECCCSS----SCEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHTTTTE
T ss_pred             EEEEEEeCC--CcccEEEEecCCC----CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCc
Confidence            567888875  7899999887643    389999999999999999 999999999999999988999999999987534


Q ss_pred             cEEEEEEeCC
Q psy1156         657 SISLHICRRL  666 (671)
Q Consensus       657 ~VtL~V~Rr~  666 (671)
                      .+.|+|.|+.
T Consensus        84 ~~~l~v~R~g   93 (98)
T 2jxo_A           84 TKLLVVDRET   93 (98)
T ss_dssp             EEEEECCHHH
T ss_pred             EEEEEEECCc
Confidence            5668887753

>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; transferase, STRU genomics, structural genomics consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo sapiens}

Probab=99.32  E-value=1e-11  Score=111.57  Aligned_cols=89  Identities=21%  Similarity=0.392  Sum_probs=77.9

Q ss_pred             CCCeEEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHh
Q psy1156         385 QEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIIS  464 (671)
Q Consensus       385 ~~~~~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~  464 (671)
                      ..+.+.|+|.+..  .+|||++.++.+..    .|++|..|.++|||+++|.|++||+|++|||+.|.++++.+++.+++
T Consensus        22 ~~~~~~v~l~~~~--~glG~~l~~~~~~~----~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~   95 (112)
T 2r4h_A           22 SMDFYTVELERGA--KGFGFSLRGGREYN----MDLYVLRLAEDGPAERSGKMRIGDEILEINGETTKNMKHSRAIELIK   95 (112)
T ss_dssp             -CCEEEEEEECBT--TBTSEEEEECGGGT----CCEEEEEECTTSHHHHTTCCCTTCEEEEETTEECTTCCHHHHHHHHH
T ss_pred             CCceEEEEEEcCC--CccCEEEeccccCC----CCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            4567889998754  78999999876433    68999999999999999999999999999999999999999999998


Q ss_pred             cCCCeEEEEEEeCCc
Q psy1156         465 SGPLNMDLLISRTSL  479 (671)
Q Consensus       465 ~~g~~V~L~V~R~~~  479 (671)
                      ..+..|.|+|.|.+.
T Consensus        96 ~~g~~v~l~v~R~~~  110 (112)
T 2r4h_A           96 NGGRRVRLFLKRGET  110 (112)
T ss_dssp             TTTTEEEEEEECCEE
T ss_pred             cCCCeEEEEEEeCCc
Confidence            888899999988653

>2eei_A PDZ domain-containing protein 1; regulatory factor, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.32  E-value=5.1e-12  Score=111.78  Aligned_cols=85  Identities=18%  Similarity=0.319  Sum_probs=74.3

Q ss_pred             ceeeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcC
Q psy1156         575 TFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIK  654 (671)
Q Consensus       575 ~~~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg  654 (671)
                      ..+.|.|.|..  .+|||.|.+....    .|++|..|.++|||+++| |++||+|++|||++|.++++.+++.+++..+
T Consensus         8 ~~r~v~l~k~~--~~~G~~l~~~~~~----~g~~V~~V~~~spA~~aG-l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~   80 (106)
T 2eei_A            8 QPRLCYLVKEG--GSYGFSLKTVQGK----KGVYMTDITPQGVAMRAG-VLADDHLIEVNGENVEDASHEEVVEKVKKSG   80 (106)
T ss_dssp             SSEEEEEECCS--SSCSCCEECCSSC----CSCEECCCCTTSHHHHHT-CCSSEEEEEETTEECTTCCHHHHHHHHHHHC
T ss_pred             CCEEEEEEECC--CCCCEEEEeccCC----CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence            34689999864  8999999876542    489999999999999999 9999999999999999999999999998774


Q ss_pred             CCcEEEEEEeCCC
Q psy1156         655 NGSISLHICRRLK  667 (671)
Q Consensus       655 ~~~VtL~V~Rr~~  667 (671)
                       ..+.|+|.|+..
T Consensus        81 -~~v~l~v~r~~~   92 (106)
T 2eei_A           81 -SRVMFLLVDKET   92 (106)
T ss_dssp             -SEEEEEECCTTT
T ss_pred             -CeEEEEEEcCch
Confidence             789999988764

>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural proteomics in europe, spine, structural genomics, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.31  E-value=8.7e-12  Score=110.78  Aligned_cols=91  Identities=29%  Similarity=0.431  Sum_probs=80.0

Q ss_pred             CCeEEEEEEeCCCCCcccEEEe-----eecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHH
Q psy1156         386 EGQTMVRVNRRDFNEELGIYIA-----KIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAK  460 (671)
Q Consensus       386 ~~~~~V~L~k~~~~~~LGfsI~-----gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av  460 (671)
                      ...+.|.|.+..  .+|||+|.     ++.+...+. .|++|..|.++|||+++|.|++||+|++|||+.+.++++.+++
T Consensus         8 ~~~~~v~l~k~~--~~lG~~i~~~~~~gg~~~~~~~-~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~   84 (108)
T 1q7x_A            8 GDIFEVELAKND--NSLGISVTVLFDKGGVNTSVRH-GGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAV   84 (108)
T ss_dssp             SSEEEEEEESSS--CSCCEEESSSSSSBCBCTTSSS-CCCBEEEECTTSTHHHHTCCCSSCEEEEETTEECBSCTTSHHH
T ss_pred             CcEEEEEEEECC--CCccEEEEEeccCCCccccCCC-CCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHH
Confidence            467889998854  89999999     766543333 7899999999999999999999999999999999999999999


Q ss_pred             HHHhcCCCeEEEEEEeCCc
Q psy1156         461 SIISSGPLNMDLLISRTSL  479 (671)
Q Consensus       461 ~~L~~~g~~V~L~V~R~~~  479 (671)
                      .+++..+..+.|+|.|.+.
T Consensus        85 ~~~~~~g~~v~l~v~R~~~  103 (108)
T 1q7x_A           85 ETLRNTGQVVHLLLEKGQS  103 (108)
T ss_dssp             HHHHHTTSEEEEEEECCCC
T ss_pred             HHHHcCCCeEEEEEEeCCc
Confidence            9999888999999999764

>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1 protein, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.31  E-value=1.3e-11  Score=111.07  Aligned_cols=86  Identities=27%  Similarity=0.397  Sum_probs=74.9

Q ss_pred             ceeeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcC
Q psy1156         575 TFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIK  654 (671)
Q Consensus       575 ~~~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg  654 (671)
                      ..+.|.|.|.. ..+|||.+.+..      .|++|..|.++|||+++|.|++||+|++|||++|.++++.+++.+|+..+
T Consensus        25 ~~~~v~l~k~~-~~~lG~~i~~~~------~gv~V~~V~~~spA~~aGll~~GD~I~~vng~~v~~~~~~~~~~~l~~~~   97 (113)
T 1va8_A           25 TVKIVRIEKAR-DIPLGATVRNEM------DSVIISRIVKGGAAEKSGLLHEGDEVLEINGIEIRGKDVNEVFDLLSDMH   97 (113)
T ss_dssp             ECEEEEEEECT-TCCCCEEEEECS------SSEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHHCC
T ss_pred             ceEEEEEEeCC-CCceeEEEEeCC------CCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            55679999986 358999998762      48999999999999999933999999999999999999999999999875


Q ss_pred             CCcEEEEEEeCCCC
Q psy1156         655 NGSISLHICRRLKS  668 (671)
Q Consensus       655 ~~~VtL~V~Rr~~~  668 (671)
                       +.|.|+|.|....
T Consensus        98 -~~v~l~v~r~~~~  110 (113)
T 1va8_A           98 -GTLTFVLIPSSGP  110 (113)
T ss_dssp             -EEEEEEEECCCCC
T ss_pred             -CeEEEEEEECCcc
Confidence             7899999987654

>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.31  E-value=7.2e-12  Score=107.93  Aligned_cols=86  Identities=24%  Similarity=0.478  Sum_probs=75.3

Q ss_pred             CeEEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhcC
Q psy1156         387 GQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSG  466 (671)
Q Consensus       387 ~~~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~~  466 (671)
                      ..++|+|.|..  .+|||++.++.+..    .+++|..|.+++||+++|.|++||+|++|||+.+.++++.+++.+++..
T Consensus         5 ~~r~v~l~k~~--~glG~~l~~~~~~~----~~~~V~~V~~~spA~~aGgl~~GD~I~~vng~~v~~~~~~~~~~~~~~~   78 (93)
T 2dkr_A            5 SSGVVELPKTD--EGLGFNIMGGKEQN----SPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEGEQHEKAVELLKAA   78 (93)
T ss_dssp             CSCEEEEECCT--TCCCEEEECSSSSS----CCCEEEEECTTSHHHHHCCCCTTCBEEEETTEECTTSCHHHHHHHHHHC
T ss_pred             CCEEEEEEeCC--CCccEEEecccCCC----CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence            45789998854  89999999876433    6899999999999999955999999999999999999999999999877


Q ss_pred             CCeEEEEEEeCC
Q psy1156         467 PLNMDLLISRTS  478 (671)
Q Consensus       467 g~~V~L~V~R~~  478 (671)
                      +..+.|+|.|..
T Consensus        79 ~~~v~l~v~r~~   90 (93)
T 2dkr_A           79 QGSVKLVVRSGP   90 (93)
T ss_dssp             CSEEEEEECCCC
T ss_pred             CCcEEEEEEeCC
Confidence            788999998764

>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase binding domain, signaling protein; HET: GNP; 2.10A {Mus musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A 2lc7_A 1rzx_A

Probab=99.31  E-value=8.3e-12  Score=114.78  Aligned_cols=96  Identities=25%  Similarity=0.477  Sum_probs=81.0

Q ss_pred             CCCCeEEEEEEeCCCCCcccEEEeeecCCC---CC--CcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHH
Q psy1156         384 SQEGQTMVRVNRRDFNEELGIYIAKIKNSS---EG--NIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQ  458 (671)
Q Consensus       384 ~~~~~~~V~L~k~~~~~~LGfsI~gg~~~~---~g--~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~  458 (671)
                      ....++.|+|.+...+++|||+|.++.+..   .+  ...|++|..|.++|||+++|+|++||+|++|||+.|.++++.+
T Consensus        26 ~~~~~r~v~l~k~~~~~~lG~~i~~~~~~~~~~~g~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~  105 (128)
T 1nf3_C           26 LPETHRRVRLCKYGTEKPLGFYIRDGSSVRVTPHGLEKVPGIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQ  105 (128)
T ss_dssp             SCTTCEEEEECCSSTTSCCCEEEEEEEEEEEETTEEEEEEEEEEEEECTTCHHHHHTCCCTTCEEEEETTEESTTCCHHH
T ss_pred             CCCccEEEEEEECCCCCCccEEEEccccccccccccCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHH
Confidence            356778999998655689999999875311   00  0148999999999999999989999999999999999999999


Q ss_pred             HHHHHhcCCCeEEEEEEeCCc
Q psy1156         459 AKSIISSGPLNMDLLISRTSL  479 (671)
Q Consensus       459 av~~L~~~g~~V~L~V~R~~~  479 (671)
                      ++.+++..+..|.|+|.|.+.
T Consensus       106 ~~~~l~~~~~~v~l~v~r~~~  126 (128)
T 1nf3_C          106 VTDMMIANSRNLIITVRPANQ  126 (128)
T ss_dssp             HHHHHHHTTTSEEEEEECCCC
T ss_pred             HHHHHHcCCCeEEEEEEECCc
Confidence            999998888889999998764

>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.31  E-value=2.4e-11  Score=106.63  Aligned_cols=88  Identities=26%  Similarity=0.485  Sum_probs=75.8

Q ss_pred             ceeeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcC
Q psy1156         575 TFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIK  654 (671)
Q Consensus       575 ~~~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg  654 (671)
                      ..+.|.|.+.. ...|||.+.+..+..   .|++|..|.++|||+++| |++||+|++|||++|.++++.+++.+++. +
T Consensus        10 ~~~~v~l~~~~-~~~lG~~~~~~~~~~---~gv~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~~~~-~   83 (100)
T 2eeh_A           10 IIHSVRVEKSP-AGRLGFSVRGGSEHG---LGIFVSKVEEGSSAERAG-LCVGDKITEVNGLSLESTTMGSAVKVLTS-S   83 (100)
T ss_dssp             EECCEEECCCS-SSSCSEEEECCTTTT---CCEEEEEECTTSHHHHHT-CCSSCEEEEETTEECSSCCHHHHHHHHHS-C
T ss_pred             eEEEEEEEECC-CCCccEEEEccccCC---CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHhhcC-C
Confidence            45678888876 367999999875432   589999999999999999 99999999999999999899999999987 3


Q ss_pred             CCcEEEEEEeCCCCC
Q psy1156         655 NGSISLHICRRLKSK  669 (671)
Q Consensus       655 ~~~VtL~V~Rr~~~~  669 (671)
                       ..|.|+|.|+....
T Consensus        84 -~~v~l~v~R~g~~p   97 (100)
T 2eeh_A           84 -SRLHMMVRRMGSGP   97 (100)
T ss_dssp             -SSEEEEEEECSCCC
T ss_pred             -CEEEEEEEECCcCC
Confidence             78999999987654

>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1 protein, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.31  E-value=1.6e-11  Score=110.39  Aligned_cols=87  Identities=26%  Similarity=0.455  Sum_probs=76.3

Q ss_pred             CCCeEEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHh
Q psy1156         385 QEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIIS  464 (671)
Q Consensus       385 ~~~~~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~  464 (671)
                      ...++.|+|.|.. .++|||.+.+..       .|++|..|.+++||+++|.|++||+|++|||+.|.++++.+++.+|+
T Consensus        23 ~~~~~~v~l~k~~-~~~lG~~i~~~~-------~gv~V~~V~~~spA~~aGll~~GD~I~~vng~~v~~~~~~~~~~~l~   94 (113)
T 1va8_A           23 GETVKIVRIEKAR-DIPLGATVRNEM-------DSVIISRIVKGGAAEKSGLLHEGDEVLEINGIEIRGKDVNEVFDLLS   94 (113)
T ss_dssp             TEECEEEEEEECT-TCCCCEEEEECS-------SSEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHH
T ss_pred             CCceEEEEEEeCC-CCceeEEEEeCC-------CCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            3467889999863 569999998752       68999999999999999944999999999999999999999999998


Q ss_pred             cCCCeEEEEEEeCCc
Q psy1156         465 SGPLNMDLLISRTSL  479 (671)
Q Consensus       465 ~~g~~V~L~V~R~~~  479 (671)
                      ..++.+.|+|.|.+.
T Consensus        95 ~~~~~v~l~v~r~~~  109 (113)
T 1va8_A           95 DMHGTLTFVLIPSSG  109 (113)
T ss_dssp             HCCEEEEEEEECCCC
T ss_pred             cCCCeEEEEEEECCc
Confidence            777899999998765

>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane, HOST- interaction, structural genomics consortium, synaptosome, T junction; 1.80A {Homo sapiens}

Probab=99.31  E-value=1.7e-11  Score=112.26  Aligned_cols=91  Identities=27%  Similarity=0.509  Sum_probs=75.9

Q ss_pred             eeeEEEeeCCCCCcccEEEecCCCCCC------CCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHH
Q psy1156         576 FHTIVFEKGPGKKGLGFTIVGGKDSPR------GAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISL  649 (671)
Q Consensus       576 ~~~V~L~K~~g~~~LGfsL~Gg~ds~~------g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~l  649 (671)
                      .+.|.+.+.. ...|||.+.++.+...      ...|++|..|.++|||+++|+|++||+|++|||++|.++++.+++.+
T Consensus        25 p~~v~l~k~~-~~~lGi~v~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~  103 (123)
T 2iwq_A           25 PRRVELWREP-SKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEA  103 (123)
T ss_dssp             CEEEEECCCT-TSCCSEEEEECC---------CCCCSEEEEEECSSSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHH
T ss_pred             CEEEEEEecC-CCCccEEEEeccCccccccccCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHH
Confidence            3578888775 4789999987654221      13589999999999999999999999999999999999999999999


Q ss_pred             HHhcCCCcEEEEEEeCCCC
Q psy1156         650 FKTIKNGSISLHICRRLKS  668 (671)
Q Consensus       650 LK~sg~~~VtL~V~Rr~~~  668 (671)
                      |+..+ +.|.|+|.|..+.
T Consensus       104 l~~~~-~~v~l~v~r~~~~  121 (123)
T 2iwq_A          104 IRKAG-NPVVFMVQSIIST  121 (123)
T ss_dssp             HHHCC-SSEEEEEECCCCC
T ss_pred             HHcCC-CeEEEEEEECCcC
Confidence            99885 6999999887654

>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex, peptide binding protein; 1.54A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A

Probab=99.31  E-value=1.1e-11  Score=111.87  Aligned_cols=85  Identities=36%  Similarity=0.602  Sum_probs=75.2

Q ss_pred             ceeeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcC
Q psy1156         575 TFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIK  654 (671)
Q Consensus       575 ~~~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg  654 (671)
                      ..+.|.|.+..  .+|||.+.++.+.    .|++|..|.++|||+++|+|++||+|++|||++|.++++.+++.+++..+
T Consensus        14 ~~~~v~l~k~~--~glG~~l~~~~~~----~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~~   87 (119)
T 1tp5_A           14 EPRRIVIHRGS--TGLGFNIVGGEDG----EGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAG   87 (119)
T ss_dssp             SCEEEEEECTT--SCCCEEEEECGGG----CCEEEEEECTTSHHHHHSCCCTTEEEEEETTEECTTCCHHHHHHHHHTSC
T ss_pred             ccEEEEEEECC--CCccEEEecCCCC----CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            45689999876  6799999987642    48999999999999999999999999999999999999999999998864


Q ss_pred             CCcEEEEEEeCC
Q psy1156         655 NGSISLHICRRL  666 (671)
Q Consensus       655 ~~~VtL~V~Rr~  666 (671)
                       ..|.|+|.|+.
T Consensus        88 -~~v~l~v~r~~   98 (119)
T 1tp5_A           88 -QTVTIIAQYKP   98 (119)
T ss_dssp             -SEEEEEEEECH
T ss_pred             -CeEEEEEEECC
Confidence             78999998864

>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics, structural genomics consort metal binding protein; 1.70A {Homo sapiens} PDB: 3pdv_A

Probab=99.31  E-value=1.5e-11  Score=105.00  Aligned_cols=84  Identities=23%  Similarity=0.363  Sum_probs=73.2

Q ss_pred             EEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhcCCCe
Q psy1156         390 MVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLN  469 (671)
Q Consensus       390 ~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~~g~~  469 (671)
                      .+++.+.. ..+|||.+.++.+..    .|++|..|.++|||+++| |++||+|++|||+.+.++++.++..+++.....
T Consensus         3 ~~~v~~~~-~~~lG~~l~~~~~~~----~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~   76 (87)
T 2pa1_A            3 ALTVDVAG-PAPWGFRITGGRDFH----TPIMVTKVAERGKAKDAD-LRPGDIIVAINGESAEGMLHAEAQSKIRQSPSP   76 (87)
T ss_dssp             EEEEEECS-SSCCSEEEEEEGGGT----EEEEEEEECSSSHHHHTT-CCTTCEEEEETTEESTTCCHHHHHHHHHTCCSS
T ss_pred             EEEEEECC-CCccCEEEecccCCC----CCEEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCe
Confidence            45555543 589999999887543    689999999999999999 999999999999999999999999999977789


Q ss_pred             EEEEEEeCCc
Q psy1156         470 MDLLISRTSL  479 (671)
Q Consensus       470 V~L~V~R~~~  479 (671)
                      +.|+|.|.+.
T Consensus        77 v~l~v~R~~~   86 (87)
T 2pa1_A           77 LRLQLDRITS   86 (87)
T ss_dssp             EEEEEEECCC
T ss_pred             EEEEEEecCC
Confidence            9999999764

>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A

Probab=99.31  E-value=1.4e-11  Score=118.88  Aligned_cols=90  Identities=38%  Similarity=0.657  Sum_probs=79.5

Q ss_pred             ceeeEEEeeCCCCCcccEEEecCCCCCC--CCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHh
Q psy1156         575 TFHTIVFEKGPGKKGLGFTIVGGKDSPR--GAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKT  652 (671)
Q Consensus       575 ~~~~V~L~K~~g~~~LGfsL~Gg~ds~~--g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~  652 (671)
                      +.+.|+|.+..  .+|||+|.++.+.+.  +..|++|..|.|+|||+++|+|++||+|++|||++|.++++.+++.+++.
T Consensus         5 ~~~~v~l~~~~--~~lG~~i~~g~~~~~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~   82 (196)
T 3gsl_A            5 EYEEITLERGN--SGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKE   82 (196)
T ss_dssp             EEEEEEEECBT--TBSSEEEECCTTSCTTSSCCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHT
T ss_pred             EEEEEEEEECC--CCCCEEEEcccCCcccCCCCCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Confidence            56789999886  789999999877542  24689999999999999999999999999999999999999999999998


Q ss_pred             cCCCcEEEEEEeCCC
Q psy1156         653 IKNGSISLHICRRLK  667 (671)
Q Consensus       653 sg~~~VtL~V~Rr~~  667 (671)
                      .+ ..|.|+|.|+.+
T Consensus        83 ~g-~~v~l~v~r~~~   96 (196)
T 3gsl_A           83 AG-SIVRLYVMRRKP   96 (196)
T ss_dssp             SC-SEEEEEEEEECC
T ss_pred             CC-CcEEEEEEecCC
Confidence            75 789999988764

>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.31  E-value=1.8e-11  Score=111.70  Aligned_cols=90  Identities=19%  Similarity=0.236  Sum_probs=78.4

Q ss_pred             CCCeEEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHh
Q psy1156         385 QEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIIS  464 (671)
Q Consensus       385 ~~~~~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~  464 (671)
                      ....+.|+|.+.  ..+|||+|.++.+..    .|++|..|.+++||+++|.|++||+|++|||+.|.++++.+++.+|+
T Consensus        17 ~~~~~~v~l~~~--~~glG~~~~~g~~~~----~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~   90 (123)
T 1ueq_A           17 KGTFLSTTLKKS--NMGFGFTIIGGDEPD----EFLQVKSVIPDGPAAQDGKMETGDVIVYINEVCVLGHTHADVVKLFQ   90 (123)
T ss_dssp             CSEEEEEEEECC--TTSCSEEEECCSSSS----CCCEEEEECTTSHHHHTSCCCTTCEEEEETTEECTTSCHHHHHHHHH
T ss_pred             CCcEEEEEEEeC--CCceeEEEecccCCC----CCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            456678888875  479999999866432    68999999999999999999999999999999999999999999999


Q ss_pred             c--CCCeEEEEEEeCCcc
Q psy1156         465 S--GPLNMDLLISRTSLK  480 (671)
Q Consensus       465 ~--~g~~V~L~V~R~~~~  480 (671)
                      .  .+..|.|+|.|....
T Consensus        91 ~~~~g~~v~l~v~R~~~~  108 (123)
T 1ueq_A           91 SVPIGQSVNLVLCRGYPL  108 (123)
T ss_dssp             TSCTTCEEEEEEEESCCC
T ss_pred             hCCCCCeEEEEEEeCCCC
Confidence            6  478999999997653

>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ domain, arhgef11, KIAA0380, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2omj_A 2os6_A

Probab=99.31  E-value=1.5e-11  Score=106.67  Aligned_cols=84  Identities=27%  Similarity=0.554  Sum_probs=73.1

Q ss_pred             ceeeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcC
Q psy1156         575 TFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIK  654 (671)
Q Consensus       575 ~~~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg  654 (671)
                      ..+.|.|.+..  .+|||.+.+.       .|++|..|.++|||+++| |++||+|++|||+++.++++.+++..++.  
T Consensus         8 ~~r~v~l~~~~--~~~G~~l~~~-------~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~~~~--   75 (93)
T 2dls_A            8 VQRCVIIQKDQ--HGFGFTVSGD-------RIVLVQSVRPGGAAMKAG-VKEGDRIIKVNGTMVTNSSHLEVVKLIKS--   75 (93)
T ss_dssp             CEEEEEEECSS--SSCCEEEECS-------SSCEEEEECSSSTTTTTT-CCSSCEEEEETTEECSSSCHHHHHHHHTS--
T ss_pred             CCEEEEEEeCC--CceeEEEeCC-------CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHhhcC--
Confidence            45678888876  7899999753       379999999999999999 99999999999999999999999998874  


Q ss_pred             CCcEEEEEEeCCCCCC
Q psy1156         655 NGSISLHICRRLKSKK  670 (671)
Q Consensus       655 ~~~VtL~V~Rr~~~~~  670 (671)
                      ...|.|+|.|+....+
T Consensus        76 g~~v~l~v~R~~~~~~   91 (93)
T 2dls_A           76 GAYVALTLLGSSSGPS   91 (93)
T ss_dssp             SSEEEEEEECCCCCSS
T ss_pred             CCEEEEEEEECCCCCC
Confidence            3789999999876554

>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; Cys Ser mutant, S genomics consortium, SGC, transferase; 2.00A {Homo sapiens}

Probab=99.31  E-value=8.8e-12  Score=106.91  Aligned_cols=84  Identities=24%  Similarity=0.386  Sum_probs=73.6

Q ss_pred             eEEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhcCC
Q psy1156         388 QTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGP  467 (671)
Q Consensus       388 ~~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~~g  467 (671)
                      .+.|.|.+..  .+|||++.++.+..    .+++|..|.++|||+++|.|++||+|++|||+++.+.++.+++.+++..+
T Consensus         3 ~~~v~l~~~~--~g~G~~~~~g~~~~----~~~~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~   76 (90)
T 2q9v_A            3 EQDIFLWRKE--TGFGFRILGGNEPG----EPIYIGHIVPLGAADTDGRLRSGDELISVDGTPVIGKSHQLVVQLMQQAA   76 (90)
T ss_dssp             EEEEEEECBT--TBCCEEEEECSSTT----SCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTSCHHHHHHHHHHHH
T ss_pred             cEEEEEEECC--CccCEEEEccccCC----CCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence            4678888754  78999999876543    67999999999999999999999999999999999999999999998653


Q ss_pred             --CeEEEEEEeC
Q psy1156         468 --LNMDLLISRT  477 (671)
Q Consensus       468 --~~V~L~V~R~  477 (671)
                        ..+.|+|.|.
T Consensus        77 ~~~~v~l~v~R~   88 (90)
T 2q9v_A           77 KQGHVNLTVRQT   88 (90)
T ss_dssp             HHTEEEEEEEEC
T ss_pred             CCCeEEEEEEec
Confidence              4899999885

>2opg_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 1.50A {Homo sapiens}

Probab=99.30  E-value=2.2e-11  Score=106.03  Aligned_cols=88  Identities=26%  Similarity=0.415  Sum_probs=77.0

Q ss_pred             CeEEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhcC
Q psy1156         387 GQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSG  466 (671)
Q Consensus       387 ~~~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~~  466 (671)
                      ..+.|.|.+..  .+|||++.++.+...   .|++|..|.++|||+++|.|++||+|++|||+++.++++.+++.+++..
T Consensus         4 ~~~~v~l~~~~--~~lG~~l~~~~~~~~---~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~   78 (98)
T 2opg_A            4 CETTIEISKGR--TGLGLSIVGGSDTLL---GAIIIHEVYEEGAACKDGRLWAGDQILEVNGIDLRKATHDEAINVLRQT   78 (98)
T ss_dssp             EEEEEEEECBT--TBTCEEEEECTTSTT---CSEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTC
T ss_pred             CEEEEEEEECC--CcccEEEecCCCCCC---CCEEEEEECCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence            35778888754  799999998765321   4899999999999999999999999999999999999999999999977


Q ss_pred             CCeEEEEEEeCCc
Q psy1156         467 PLNMDLLISRTSL  479 (671)
Q Consensus       467 g~~V~L~V~R~~~  479 (671)
                      +..+.|+|.|.+.
T Consensus        79 ~~~v~l~v~R~~~   91 (98)
T 2opg_A           79 PQRVRLTLYRDEA   91 (98)
T ss_dssp             CSEEEEEEEECSS
T ss_pred             CCeEEEEEEcCCC
Confidence            7899999999765

>2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; PDZ, E6 binding, tumor suppressor, peptide binding protein; 2.15A {Mus musculus}

Probab=99.30  E-value=1.7e-11  Score=103.99  Aligned_cols=82  Identities=24%  Similarity=0.317  Sum_probs=71.1

Q ss_pred             EEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhcC--
Q psy1156         389 TMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSG--  466 (671)
Q Consensus       389 ~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~~--  466 (671)
                      +.|+|.|..  .+|||.+.++.+..    .+++|..|.+++||+++|.|++||+|++|||+++.++++.++..+++..  
T Consensus         2 ~~v~l~k~~--~g~G~~i~~~~~~~----~~~~V~~v~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~   75 (85)
T 2i04_A            2 IHTKLRKSS--RGFGFTVVGGDEPD----EFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKIFQSIPI   75 (85)
T ss_dssp             EEEEEECBT--TBSSEEEEECCSTT----BCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTSCT
T ss_pred             EEEEEEECC--CCCCEEEEcccCCC----CCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCC
Confidence            467787754  78999999865432    6899999999999999999999999999999999999999999999865  


Q ss_pred             CCeEEEEEEe
Q psy1156         467 PLNMDLLISR  476 (671)
Q Consensus       467 g~~V~L~V~R  476 (671)
                      +..+.|+|.|
T Consensus        76 g~~v~l~v~R   85 (85)
T 2i04_A           76 GASVDLELCR   85 (85)
T ss_dssp             TCEEEEEEEC
T ss_pred             CCeEEEEEEC
Confidence            6788998865

>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.35A {Homo sapiens}

Probab=99.30  E-value=2e-11  Score=105.55  Aligned_cols=88  Identities=30%  Similarity=0.529  Sum_probs=73.3

Q ss_pred             eeeEEEeeCCCCCcccEEEecCCCCCC-CCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcC
Q psy1156         576 FHTIVFEKGPGKKGLGFTIVGGKDSPR-GAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIK  654 (671)
Q Consensus       576 ~~~V~L~K~~g~~~LGfsL~Gg~ds~~-g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg  654 (671)
                      ...|.+.+..  .+|||.+.+..+... ...|++|..|.++|||+++|+|++||+|++|||++|.++++.+++.+++.. 
T Consensus         5 ~~~v~l~~~~--~~lG~~i~~~~~~~~~~~~~~~V~~v~~~s~A~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~-   81 (97)
T 2iwn_A            5 TFDVELTKNV--QGLGITIAGYIGDKKLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHT-   81 (97)
T ss_dssp             EEEEEEECBT--TBSCEEEECCCCC----CCCCEEEEECTTCHHHHHCCCCTTCEEEEETTEECTTSCHHHHHHHHHTC-
T ss_pred             EEEEEEecCC--CCCcEEEEccCCCCCCCCCCEEEEEeCCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-
Confidence            4567776664  789999998754221 235899999999999999999999999999999999999999999999885 


Q ss_pred             CCcEEEEEEeCC
Q psy1156         655 NGSISLHICRRL  666 (671)
Q Consensus       655 ~~~VtL~V~Rr~  666 (671)
                      ...|.|+|.|+.
T Consensus        82 ~~~v~l~v~r~g   93 (97)
T 2iwn_A           82 GQTVLLTLMRRG   93 (97)
T ss_dssp             CSEEEEEEEEEE
T ss_pred             CCeEEEEEEeCC
Confidence            478999998865

>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs large homolog 2, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.30  E-value=8.4e-12  Score=108.15  Aligned_cols=83  Identities=27%  Similarity=0.292  Sum_probs=71.7

Q ss_pred             eeeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcCC
Q psy1156         576 FHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKN  655 (671)
Q Consensus       576 ~~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg~  655 (671)
                      .+.|.|.|.. ..+|||++.+.      ..|++|..|.++|||+++|.|++||+|++|||++| +.++.+++.+|+..+ 
T Consensus         7 ~r~v~l~k~~-~~~lG~~i~~~------~~~v~V~~V~~~spA~~ag~L~~GD~I~~ing~~v-~~~~~~~~~~l~~~~-   77 (91)
T 2e7k_A            7 GRMVGIRKTA-GEHLGVTFRVE------GGELVIARILHGGMVAQQGLLHVGDIIKEVNGQPV-GSDPRALQELLRNAS-   77 (91)
T ss_dssp             SCBCCBCCCT-TCCCCEEEEES------SSSEEEEEECSSSHHHHHCCCCTTCEEEEETTEEC-TTCHHHHHHHHHTCC-
T ss_pred             cEEEEEEECC-CCcEeEEEEec------CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEEC-CCCHHHHHHHHHcCC-
Confidence            4567787765 47899999873      24899999999999999988999999999999999 889999999999874 


Q ss_pred             CcEEEEEEeCCC
Q psy1156         656 GSISLHICRRLK  667 (671)
Q Consensus       656 ~~VtL~V~Rr~~  667 (671)
                      +.|.|+|.|...
T Consensus        78 ~~v~l~v~~~~~   89 (91)
T 2e7k_A           78 GSVILKILSGPS   89 (91)
T ss_dssp             SSBCEEEECCSC
T ss_pred             CeEEEEEEECCc
Confidence            789999988653

>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=99.30  E-value=1.4e-11  Score=112.52  Aligned_cols=91  Identities=25%  Similarity=0.411  Sum_probs=80.0

Q ss_pred             CCCCeEEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHH
Q psy1156         384 SQEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSII  463 (671)
Q Consensus       384 ~~~~~~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L  463 (671)
                      ....++.|.|.+.  ..+|||+|.++.+..  . .|++|..|.++|||+++|+|++||+|++|||+.|.++++.+++.++
T Consensus        22 ~~~~~~~v~l~k~--~~glG~~l~~~~~~~--~-~gv~V~~V~~~spA~~aG~L~~GD~Il~Ing~~v~~~~~~~~~~~~   96 (124)
T 2daz_A           22 LPGELHIIELEKD--KNGLGLSLAGNKDRS--R-MSIFVVGINPEGPAAADGRMRIGDELLEINNQILYGRSHQNASAII   96 (124)
T ss_dssp             SSSEEEEEEEECC--SSCCCEEEECBSSTT--S-CCEEEEEECTTSHHHHHTCCCTTCEECEESSCBCTTSCHHHHHHHH
T ss_pred             CCCceEEEEEEeC--CCccCEEEeccCCCC--c-CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence            3457788999885  379999999876532  1 6899999999999999999999999999999999999999999999


Q ss_pred             hcCCCeEEEEEEeCCc
Q psy1156         464 SSGPLNMDLLISRTSL  479 (671)
Q Consensus       464 ~~~g~~V~L~V~R~~~  479 (671)
                      +..+..|.|+|.|.+.
T Consensus        97 ~~~~~~v~l~v~R~~~  112 (124)
T 2daz_A           97 KTAPSKVKLVFIRNED  112 (124)
T ss_dssp             HHSCSEEEEEEEECTT
T ss_pred             HcCCCeEEEEEEeCCC
Confidence            8888899999999765

>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.30  E-value=1.3e-11  Score=111.93  Aligned_cols=86  Identities=28%  Similarity=0.436  Sum_probs=71.3

Q ss_pred             eeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhc---
Q psy1156         577 HTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTI---  653 (671)
Q Consensus       577 ~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~s---  653 (671)
                      +.+.+.+.   .+|||+|.++.+...  .+++|..|.++|||+++|.|++||+|++|||++|.+++|.+++.+|+..   
T Consensus        20 ~~~~~~~~---~glG~~i~gg~~~~~--~~i~I~~V~~gspA~~aggL~~GD~Il~Ing~~v~~~~~~~~~~~l~~~~~~   94 (118)
T 1v6b_A           20 RLLRIKKE---GSLDLALEGGVDSPV--GKVVVSAVYEGGAAERHGGVVKGDEIMAINGKIVTDYTLAEAEAALQKAWNQ   94 (118)
T ss_dssp             EEEEEESC---SCCCCEEEEBTTSSS--CSEEEEECCTTSHHHHHCSSCTTCEEEEESSCBCTTCBHHHHHHHHHHHHHH
T ss_pred             EEEEECCC---CccCEEEEcccCCCC--CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHHhhhc
Confidence            44555544   589999999876542  2499999999999999955999999999999999999999999999875   


Q ss_pred             CCCcEEEEEEeCCC
Q psy1156         654 KNGSISLHICRRLK  667 (671)
Q Consensus       654 g~~~VtL~V~Rr~~  667 (671)
                      +...|.|+|.|..+
T Consensus        95 ~g~~v~l~v~r~~~  108 (118)
T 1v6b_A           95 GGDWIDLVVAVCPP  108 (118)
T ss_dssp             TCSEEEEEEECCCS
T ss_pred             CCCeEEEEEEeCCc
Confidence            23689999999653

>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}

Probab=99.30  E-value=1.9e-11  Score=113.41  Aligned_cols=93  Identities=22%  Similarity=0.295  Sum_probs=78.4

Q ss_pred             CCCeEEEEEEeCCCCCcccEEEeeecCCCC-------C-CcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCH
Q psy1156         385 QEGQTMVRVNRRDFNEELGIYIAKIKNSSE-------G-NIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTM  456 (671)
Q Consensus       385 ~~~~~~V~L~k~~~~~~LGfsI~gg~~~~~-------g-~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~  456 (671)
                      ....+.|+|.|.. .++|||+|.++.....       . ...|++|..|.+||||+++| |++||+|++|||+.|.++++
T Consensus        25 ~~~~r~v~l~r~~-~~g~Gf~i~g~~~~~~~~~~~~~~~~~~gv~V~~V~~gspA~~aG-L~~GD~Il~Vng~~v~~~~~  102 (132)
T 3l4f_D           25 IIKEKTVLLQKKD-SEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAG-LRMGDFLIEVNGQNVVKVGH  102 (132)
T ss_dssp             CCCCCEEEEECCT-TSCCCEEEEEECCSSCCSCCCCCTTSCCSEEEEEECTTSGGGGGT-CCTTCEEEEESSSBCTTSCH
T ss_pred             CCCCEEEEEEECC-CCcEeEEEeccCCCCccccccccccCCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCH
Confidence            3455789998853 5899999999875310       0 01379999999999999999 99999999999999999999


Q ss_pred             HHHHHHHhcCCCeEEEEEEeCCc
Q psy1156         457 TQAKSIISSGPLNMDLLISRTSL  479 (671)
Q Consensus       457 ~~av~~L~~~g~~V~L~V~R~~~  479 (671)
                      .+++.+++..+..+.|+|.+...
T Consensus       103 ~~~~~~l~~~g~~v~l~v~~~~~  125 (132)
T 3l4f_D          103 RQVVNMIRQGGNTLMVKVVMVTR  125 (132)
T ss_dssp             HHHHHHHHHTTTEEEEEEECCCC
T ss_pred             HHHHHHHHcCCCEEEEEEEECCC
Confidence            99999999888999999988654

>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1 interacting protein 1, activin receptor interacting protein 1; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.30  E-value=3.2e-12  Score=112.24  Aligned_cols=87  Identities=36%  Similarity=0.688  Sum_probs=74.5

Q ss_pred             eeeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcCC
Q psy1156         576 FHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKN  655 (671)
Q Consensus       576 ~~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg~  655 (671)
                      .+.+.+.+..  .+|||.+.++.+..   .|++|..|.++|||+++|+|++||+|++|||++|.++++.+++.+++..+ 
T Consensus        12 ~~~v~l~~~~--~g~G~~~~~~~~~~---~~~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~g-   85 (103)
T 1wfv_A           12 YFTVDMEKGA--KGFGFSIRGGREYK---MDLYVLRLAEDGPAIRNGRMRVGDQIIEINGESTRDMTHARAIELIKSGG-   85 (103)
T ss_dssp             CEECCEECCT--TSSSBCCEEETTTT---EEEECCCBCTTSHHHHHCSSCTTCEEEEETTEECSSCCHHHHHHHHHHHC-
T ss_pred             EEEEEEecCC--CcCCEEEeccccCC---CCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC-
Confidence            3466776665  68999999876543   48999999999999999999999999999999999999999999998664 


Q ss_pred             CcEEEEEEeCCCC
Q psy1156         656 GSISLHICRRLKS  668 (671)
Q Consensus       656 ~~VtL~V~Rr~~~  668 (671)
                      ..|.|+|.|+...
T Consensus        86 ~~v~l~v~R~~~~   98 (103)
T 1wfv_A           86 RRVRLLLKRGTGS   98 (103)
T ss_dssp             SEECEEEECTTCS
T ss_pred             CeEEEEEEECCCC
Confidence            7899999987643

>4amh_A Disks large homolog 1; permutation, protein folding, structural protein; 2.30A {Homo sapiens}

Probab=99.30  E-value=1.4e-11  Score=109.73  Aligned_cols=82  Identities=24%  Similarity=0.332  Sum_probs=72.7

Q ss_pred             CCCcccEEEeeecCCCCC-CcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhcCCCeEEEEEEe
Q psy1156         398 FNEELGIYIAKIKNSSEG-NIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISR  476 (671)
Q Consensus       398 ~~~~LGfsI~gg~~~~~g-~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~~g~~V~L~V~R  476 (671)
                      ...+|||+|.+|.+.... ...|++|..|.++|||+++|+|++||+|++|||+.|.++++.+++.+++..+..|.|+|.|
T Consensus        11 ~~~~~Gf~i~gG~~~~~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~v~l~v~R   90 (106)
T 4amh_A           11 GSKGLGFSIAGGVGNQHWPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVALEEVTHEEAVTALKNTSDFVYLKVAK   90 (106)
T ss_dssp             -CCCSCEEEEECTTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHSCCSEEEEEEEC
T ss_pred             CCCccCEEEEeccCCccccCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeEEEEEEe
Confidence            358999999999875421 1258999999999999999999999999999999999999999999999888999999999


Q ss_pred             CCc
Q psy1156         477 TSL  479 (671)
Q Consensus       477 ~~~  479 (671)
                      .+.
T Consensus        91 ~~~   93 (106)
T 4amh_A           91 PGS   93 (106)
T ss_dssp             CSS
T ss_pred             CCC
Confidence            765

>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high affinity ligand, cell adhesio; 1.60A {Homo sapiens} PDB: 2h2c_A 2h3m_A 2rrm_A

Probab=99.30  E-value=1.8e-11  Score=108.33  Aligned_cols=90  Identities=28%  Similarity=0.532  Sum_probs=76.3

Q ss_pred             ceeeEEEeeCCCCCcccEEEecCCCCCC---CCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHH
Q psy1156         575 TFHTIVFEKGPGKKGLGFTIVGGKDSPR---GAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFK  651 (671)
Q Consensus       575 ~~~~V~L~K~~g~~~LGfsL~Gg~ds~~---g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK  651 (671)
                      ..+.|.|.|.+ ..+|||+|.++.+.+.   +..|++|..|.++|||+ +| |++||+|++|||++|.++++.+++..++
T Consensus         7 ~~~~v~l~k~~-~~glG~~i~~~~~~~~~~~~~~gv~V~~V~~~spA~-ag-l~~GD~I~~vng~~v~~~~~~~~~~~~~   83 (107)
T 2h2b_A            7 EQHTVTLHRAP-GFGFGIAISGGRDNPHFQSGETSIVISDVLKGGPAE-GQ-LQENDRVAMVNGVSMDNVEHAFAVQQLR   83 (107)
T ss_dssp             EEEEEEEECBT-TTBTCEEEEECTTSCCTTTCCCCEEEEEECTTSTTB-TT-BCTTCEEEEETTEECTTCCHHHHHHHHH
T ss_pred             eeEEEEEEeCC-CCccCEEEecCcCCCcccCCCCCEEEEEECCCCchh-hC-CCCCCEEEEECCEECCCccHHHHHHHhh
Confidence            55789999885 3799999998876431   34599999999999999 88 9999999999999999999999988888


Q ss_pred             hcCCCcEEEEEEeCCCC
Q psy1156         652 TIKNGSISLHICRRLKS  668 (671)
Q Consensus       652 ~sg~~~VtL~V~Rr~~~  668 (671)
                      ..+ ..|.|+|.|+...
T Consensus        84 ~~g-~~v~l~v~R~~~~   99 (107)
T 2h2b_A           84 KSG-KNAKITIRRKKGG   99 (107)
T ss_dssp             TCC-SEEEEEEEEESCC
T ss_pred             CCC-CEEEEEEEECCCC
Confidence            654 7899999987653

>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein, STXBP4 protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.29  E-value=1.7e-11  Score=109.92  Aligned_cols=90  Identities=24%  Similarity=0.405  Sum_probs=77.2

Q ss_pred             CCCeEEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHh
Q psy1156         385 QEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIIS  464 (671)
Q Consensus       385 ~~~~~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~  464 (671)
                      ...++.|+|.|.   .+|||+|.++.+... . .+++|..|.+++||+++|+|++||+|++|||+++.+++|.+++.+|+
T Consensus        13 ~~~~~~v~l~k~---~glG~~i~gg~~~~~-~-~~~~V~~v~~~s~A~~aG~l~~GD~Il~Vng~~~~~~~~~~~~~~l~   87 (109)
T 1wi4_A           13 DPAFRVITVTKE---TGLGLKILGGINRNE-G-PLVYIHEVIPGGDCYKDGRLKPGDQLVSINKESMIGVSFEEAKSIIT   87 (109)
T ss_dssp             CTTEEEEEECCS---SCCCEEEEECSSSSS-C-SSEEEEEECTTSHHHHHCSCCTTCBEEEETTSCCTTCCHHHHHHHHH
T ss_pred             CCcEEEEEEeCC---CccCEEEEeccCCCC-C-CCEEEEEeCCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            457888999773   799999999875431 1 47999999999999999999999999999999999999999999998


Q ss_pred             cC----CCeEEEEEEeCCc
Q psy1156         465 SG----PLNMDLLISRTSL  479 (671)
Q Consensus       465 ~~----g~~V~L~V~R~~~  479 (671)
                      ..    +..+.|.|.|.+.
T Consensus        88 ~~~~r~~~~~~l~v~R~~~  106 (109)
T 1wi4_A           88 RAKLRSESPWEIAFIRSGP  106 (109)
T ss_dssp             HSCCSSSSCEEEEEECCCC
T ss_pred             ccccCCCceEEEEEEeCCC
Confidence            54    4778999988654

>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.29  E-value=9.4e-12  Score=110.13  Aligned_cols=92  Identities=29%  Similarity=0.533  Sum_probs=78.5

Q ss_pred             CCCeEEEEEEeCCCCCcccEEEeeecCCC---CCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHH
Q psy1156         385 QEGQTMVRVNRRDFNEELGIYIAKIKNSS---EGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKS  461 (671)
Q Consensus       385 ~~~~~~V~L~k~~~~~~LGfsI~gg~~~~---~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~  461 (671)
                      ..+.+.|+|.+..  .+|||+|.++.+..   .++ .|++|..|.++|||+++|.|++||+|++|||+.+.++++.+++.
T Consensus         5 ~~~~~~v~l~~~~--~glG~~l~~g~~~~~~~~~~-~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~   81 (105)
T 1wha_A            5 SSGRHVACLARSE--RGLGFSIAGGKGSTPYRAGD-AGIFVSRIAEGGAAHRAGTLQVGDRVLSINGVDVTEARHDHAVS   81 (105)
T ss_dssp             CCEEEEEEECCCT--TCCSCEEECCTTSCCSSTTC-CSCEEEECCTTSSHHHHSSCCTTCEEEEESSCBCTTCCHHHHHH
T ss_pred             CCeeEEEEEEeCC--CccCEEEEeccCCCcccCCC-CCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHH
Confidence            3456778887754  68999999876521   122 68999999999999999999999999999999999999999999


Q ss_pred             HHhcCCCeEEEEEEeCCc
Q psy1156         462 IISSGPLNMDLLISRTSL  479 (671)
Q Consensus       462 ~L~~~g~~V~L~V~R~~~  479 (671)
                      +++..+..+.|+|.|...
T Consensus        82 ~l~~~g~~v~l~v~R~~~   99 (105)
T 1wha_A           82 LLTAASPTIALLLEREAG   99 (105)
T ss_dssp             HHTSCCSCEEEEEEECCC
T ss_pred             HHHcCCCeEEEEEEECCC
Confidence            999878899999999754

>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A {Homo sapiens}

Probab=99.29  E-value=1.9e-11  Score=106.21  Aligned_cols=89  Identities=19%  Similarity=0.327  Sum_probs=76.5

Q ss_pred             CeEEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhcC
Q psy1156         387 GQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSG  466 (671)
Q Consensus       387 ~~~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~~  466 (671)
                      ..+.|+|.+..  .+|||++.+..... +. .|++|..|.++|||+++| |++||+|++|||+.+.++++.++..+++..
T Consensus         3 ~~r~v~l~k~~--~~~G~~l~~~~~~~-~~-~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~   77 (96)
T 2v90_A            3 KPRCLHLEKGP--QGFGFLLREEKGLD-GR-PGQFLWEVDPGLPAKKAG-MQAGDRLVAVAGESVEGLGHEETVSRIQGQ   77 (96)
T ss_dssp             CCEEEEEECBT--TBSCEEEEEEECTT-SC-EEEEEEEECTTSHHHHTT-CCTTEEEEEETTEECTTCCHHHHHHHHHTT
T ss_pred             CCEEEEEEeCC--CcccEEEEeccCCC-CC-CCeEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence            45889998864  69999998744221 11 589999999999999999 999999999999999999999999999977


Q ss_pred             CCeEEEEEEeCCcc
Q psy1156         467 PLNMDLLISRTSLK  480 (671)
Q Consensus       467 g~~V~L~V~R~~~~  480 (671)
                      +..+.|+|.|.+..
T Consensus        78 g~~v~l~v~r~~~~   91 (96)
T 2v90_A           78 GSCVSLTVVDPEAD   91 (96)
T ss_dssp             TTEEEEEEECCCTT
T ss_pred             CCEEEEEEECCCCc
Confidence            88999999997653

>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal peptide complex, high affnity ligand, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A

Probab=99.29  E-value=8.2e-12  Score=110.00  Aligned_cols=87  Identities=33%  Similarity=0.546  Sum_probs=73.2

Q ss_pred             ceeeEEEeeCCCCCcccEEEecCCCC---C--CCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHH
Q psy1156         575 TFHTIVFEKGPGKKGLGFTIVGGKDS---P--RGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISL  649 (671)
Q Consensus       575 ~~~~V~L~K~~g~~~LGfsL~Gg~ds---~--~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~l  649 (671)
                      ....|.+.+.   .+|||+|.++.+.   +  ....|++|..|.++|||++ | |++||+|++|||++|.++++.+++.+
T Consensus        11 ~~~~v~l~~~---~~lG~~i~gg~~~~~~p~~~~~~gv~V~~V~~~spA~~-g-L~~GD~I~~vng~~v~~~~~~~~~~~   85 (103)
T 1n7t_A           11 QEIRVRVEKD---PELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK-L-LQPGDKIIQANGYSFINIEHGQAVSL   85 (103)
T ss_dssp             CCEEEEEECS---SCCCBEEEECTTSSBCSSCSSCCSEECCCBSSSSTTSS-S-CCTTCEEEEETTEECSSCCHHHHHHH
T ss_pred             EEEEEEEccC---CCccEEEEcccCCCCCccccCCCCEEEEEECCCCchHH-C-CCCCCEEEEECCEECCCCCHHHHHHH
Confidence            3456777775   4799999997642   1  1346899999999999999 8 99999999999999999999999999


Q ss_pred             HHhcCCCcEEEEEEeCCC
Q psy1156         650 FKTIKNGSISLHICRRLK  667 (671)
Q Consensus       650 LK~sg~~~VtL~V~Rr~~  667 (671)
                      ++..+ ..|.|+|.|+..
T Consensus        86 ~~~~g-~~v~l~v~R~~~  102 (103)
T 1n7t_A           86 LKTFQ-NTVELIIVREVS  102 (103)
T ss_dssp             HHHCC-SEEEEEEECCCC
T ss_pred             hhcCC-CeEEEEEEecCC
Confidence            99764 789999999764

>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding site complex, protein binding; 1.43A {Homo sapiens} SCOP: b.36.1.1 PDB: 3nfl_A 2vph_A

Probab=99.29  E-value=1.1e-11  Score=109.79  Aligned_cols=88  Identities=18%  Similarity=0.266  Sum_probs=76.2

Q ss_pred             CCCeEEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcC-CCCCCCEEEccCCeeccCCCHHHHHHHH
Q psy1156         385 QEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEG-CLELGDEIISVNGQRLRGLTMTQAKSII  463 (671)
Q Consensus       385 ~~~~~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG-~L~~GD~IlaVNG~~V~~~s~~~av~~L  463 (671)
                      ..+++.|.|.+. ..++|||.+.++.+..    .+++|..|.++|||+++| +|++||+|++|||+.|.++++.+++.++
T Consensus        15 ~~~~~~v~l~~~-~~~~~G~~~~gg~~~~----~~~~V~~V~~~spA~~aG~rL~~GD~Il~ing~~v~~~~~~~~~~~i   89 (107)
T 3nfk_A           15 HDNLVLIRMKPD-ENGRFGFNVKGGYDQK----MPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFI   89 (107)
T ss_dssp             -CCCEEEEECCC-TTSCCCEEEEEEGGGT----EEEEEEEECTTSHHHHSSSCCCTTCEEEEETTEECTTCCHHHHHHHH
T ss_pred             CCCEEEEEEEcC-CCCCCCEEEEccCCCC----CCeEEEEECCCCchHHcCCccCCCCEEEEECCEECCCCCHHHHHHHH
Confidence            457889999875 3589999999886543    689999999999999999 5999999999999999999999999999


Q ss_pred             hcCCC----eEEEEEEeC
Q psy1156         464 SSGPL----NMDLLISRT  477 (671)
Q Consensus       464 ~~~g~----~V~L~V~R~  477 (671)
                      +..+.    .|.|+|.|+
T Consensus        90 ~~~~~~~~~~v~l~v~r~  107 (107)
T 3nfk_A           90 KASCERHSGELMLLVRPN  107 (107)
T ss_dssp             HCGGGSBTTBEEEEEECC
T ss_pred             HhccccCCcEEEEEEEcC
Confidence            97654    899999763

>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter usage, alternative splicing, cell junction, cell membrane, disease mutation; 1.75A {Homo sapiens}

Probab=99.29  E-value=1.1e-11  Score=106.66  Aligned_cols=80  Identities=28%  Similarity=0.447  Sum_probs=72.2

Q ss_pred             EEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhcCCC
Q psy1156         389 TMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPL  468 (671)
Q Consensus       389 ~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~~g~  468 (671)
                      ..|.|.+.+..+.|||.+.          .|++|..|.+||||+++|+|++||+|++|||+++.++++++++.+++..++
T Consensus         2 l~v~l~~~~~~~~~G~~~~----------~gv~V~~V~~gspA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~i~~~~~   71 (88)
T 3e17_A            2 IGVLLMKSRANEEYGLRLG----------SQIFVKEMTRTGLATKDGNLHEGDIILKINGTVTENMSLTDARKLIEKSRG   71 (88)
T ss_dssp             EEEEEECBTTBCCCCEEEE----------EEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHTTT
T ss_pred             eEEEEEeCCCCCCCCEEEe----------CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCC
Confidence            4677888677789999997          579999999999999999999999999999999999999999999998899


Q ss_pred             eEEEEEEeCC
Q psy1156         469 NMDLLISRTS  478 (671)
Q Consensus       469 ~V~L~V~R~~  478 (671)
                      .+.|+|.+..
T Consensus        72 ~v~L~v~~~~   81 (88)
T 3e17_A           72 KLQLVVLRDL   81 (88)
T ss_dssp             EEEEEECCC-
T ss_pred             eEEEEEeCCC
Confidence            9999997643

>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus}

Probab=99.29  E-value=6.8e-12  Score=129.63  Aligned_cols=89  Identities=27%  Similarity=0.392  Sum_probs=77.8

Q ss_pred             cceeeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhc
Q psy1156         574 CTFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTI  653 (671)
Q Consensus       574 ~~~~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~s  653 (671)
                      ...+.|.|.|.. ..+|||.|.|+.+..   .|+||..|.++|||+++++|++||+|++|||++|.+++|.+++.+|+..
T Consensus        76 ~~~r~V~L~k~~-~~glGf~I~gg~d~~---~gi~V~~V~~gspA~~~aGL~~GD~Il~VNG~~v~~~t~~e~v~~l~~~  151 (263)
T 1z87_A           76 LQRRRVTVRKAD-AGGLGISIKGGRENK---MPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKT  151 (263)
T ss_dssp             CSSEEECCCTTT-TCCCCCEEEEETTTT---EEEEEEECCTTSHHHHCTTCCSSCEEEEESSCBCTTSCHHHHHHHHHHC
T ss_pred             CccEEEEEEeCC-CCCEeEEEeeccCCC---CCEEEEEECCCCHHHHhCCCCCCCEEEEECCEECCCcCHHHHHHHHhcC
Confidence            356789999875 389999999987643   5899999999999999533999999999999999999999999999998


Q ss_pred             CCCcEEEEEEeCCC
Q psy1156         654 KNGSISLHICRRLK  667 (671)
Q Consensus       654 g~~~VtL~V~Rr~~  667 (671)
                      + +.|.|+|.|...
T Consensus       152 g-~~V~L~V~R~~~  164 (263)
T 1z87_A          152 G-KEVVLEVKYMKE  164 (263)
T ss_dssp             C-SCCCEEEECCSS
T ss_pred             C-CeEEEEEEeCcc
Confidence            5 789999998754

>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural genomics consortium, SGC; 1.11A {Homo sapiens}

Probab=99.29  E-value=1.7e-11  Score=105.08  Aligned_cols=83  Identities=22%  Similarity=0.315  Sum_probs=71.9

Q ss_pred             EEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhcCCC
Q psy1156         389 TMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPL  468 (671)
Q Consensus       389 ~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~~g~  468 (671)
                      +.|++..   ..+|||++.++.+..    .|++|..|.+++||+++| |++||+|++|||+++.++++.++..+++..+.
T Consensus         5 ~~v~~~~---~~~~G~~l~gg~~~~----~~v~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~   76 (89)
T 2q3g_A            5 FKVVLEG---PAPWGFRLQGGKDFN----VPLSISRLTPGGKAAQAG-VAVGDWVLSIDGENAGSLTHIEAQNKIRACGE   76 (89)
T ss_dssp             EEEEEES---SSCCCEEEEEEGGGT----EEEEEEEECTTSHHHHTT-CCTTCEEEEETTEEGGGCCHHHHHHHHHTCTT
T ss_pred             EEEEEcC---CCcccEEEECcCCCC----CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCC
Confidence            4455532   389999999877543    689999999999999999 99999999999999999999999999987788


Q ss_pred             eEEEEEEeCCc
Q psy1156         469 NMDLLISRTSL  479 (671)
Q Consensus       469 ~V~L~V~R~~~  479 (671)
                      .+.|+|.|.+.
T Consensus        77 ~v~l~v~R~~~   87 (89)
T 2q3g_A           77 RLSLGLSRAIT   87 (89)
T ss_dssp             EEEEEEEEECC
T ss_pred             EEEEEEEeCCC
Confidence            99999988654

>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase, protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A

Probab=99.29  E-value=2.1e-11  Score=111.24  Aligned_cols=85  Identities=19%  Similarity=0.287  Sum_probs=76.2

Q ss_pred             eEEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhcCC
Q psy1156         388 QTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGP  467 (671)
Q Consensus       388 ~~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~~g  467 (671)
                      .+.|+|.+. ..++|||++.++.+..    .+++|..|.+||||+++|+|++||+|++|||+.+.++++.+++.+++..+
T Consensus        20 ~~~v~l~k~-~~~~lG~~i~gg~~~~----~~~~V~~v~~gspA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~   94 (125)
T 3hpk_A           20 PGKVTLQKD-AQNLIGISIGGGAQYC----PCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVK   94 (125)
T ss_dssp             EEEEEEECC-TTSCCCEEEEECSSCC----SSEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHSC
T ss_pred             CeEEEEEeC-CCCCcCEEEeccCCCC----CCEEEEEeCCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            467888774 4689999999987643    68999999999999999999999999999999999999999999999888


Q ss_pred             CeEEEEEEeC
Q psy1156         468 LNMDLLISRT  477 (671)
Q Consensus       468 ~~V~L~V~R~  477 (671)
                      +.|.|+|.|.
T Consensus        95 ~~v~l~v~r~  104 (125)
T 3hpk_A           95 GEVTIHYNKL  104 (125)
T ss_dssp             SEEEEEEEEE
T ss_pred             CeEEEEEEEC
Confidence            8899999884

>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission, protein binding; NMR {Rattus norvegicus}

Probab=99.29  E-value=8.3e-12  Score=111.77  Aligned_cols=91  Identities=24%  Similarity=0.374  Sum_probs=77.4

Q ss_pred             CeEEEEEEeCCCCCcccEEEee---ecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHH
Q psy1156         387 GQTMVRVNRRDFNEELGIYIAK---IKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSII  463 (671)
Q Consensus       387 ~~~~V~L~k~~~~~~LGfsI~g---g~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L  463 (671)
                      ..+.|.|.+.  ..+|||++.+   +.+...+. .|++|..|.++|||+++|+|++||+|++|||+++.++++.+++.++
T Consensus         4 ~~~~v~l~k~--~~glG~~l~~~~~~~~~~~~~-~g~~V~~V~~~s~A~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~   80 (113)
T 2g5m_B            4 ELFPVELEKD--SEGLGISIIGMGAGADMGLEK-LGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVL   80 (113)
T ss_dssp             EEEEEECCCC--SSCCCCEEEEEECCCCSSSCC-EEEEEEECCTTSHHHHHTCSCTTCBEEEETTEECSSCCHHHHHHHH
T ss_pred             EEEEEEEEeC--CCCCCEEEEecCCCCcCCCCC-CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence            4567787774  3899999998   33322222 6899999999999999999999999999999999999999999999


Q ss_pred             hcCCCeEEEEEEeCCcc
Q psy1156         464 SSGPLNMDLLISRTSLK  480 (671)
Q Consensus       464 ~~~g~~V~L~V~R~~~~  480 (671)
                      +..+..+.|+|.|.+..
T Consensus        81 ~~~g~~v~l~v~R~~~~   97 (113)
T 2g5m_B           81 RNTKGRVRFMIGRERPG   97 (113)
T ss_dssp             HHSCSSCEEEEEECCCC
T ss_pred             hcCCCeEEEEEEeCCCC
Confidence            98889999999998764

>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic}

Probab=99.29  E-value=2e-11  Score=108.29  Aligned_cols=95  Identities=22%  Similarity=0.362  Sum_probs=79.0

Q ss_pred             CCCeEEEEEEeCCCCCcccEEEeeecCCCC-CCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHH
Q psy1156         385 QEGQTMVRVNRRDFNEELGIYIAKIKNSSE-GNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSII  463 (671)
Q Consensus       385 ~~~~~~V~L~k~~~~~~LGfsI~gg~~~~~-g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L  463 (671)
                      +...+.|.|.+.....+|||++.++.+... +...|++|..|.+++||+++|.|++||+|++|||+.|.++++.+++.++
T Consensus        10 ~~~~~~v~l~r~~~~~~lG~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l   89 (108)
T 2jre_A           10 GFSLYSVELFREKDTSSLGISISGMRDQSTTGEATGIYVKSLIPGSAAALDGRIEPNDKILRVDDVNVQGMAQSDVVEVL   89 (108)
T ss_dssp             SCEEEEEEEECCSTTSCCSEEEECCCCCSCSSCCCCCEEEEECTTSHHHHHSSCCSSEEEEEETTEECTTSCHHHHHHHH
T ss_pred             CcEEEEEEEEecCCCCCcCEEEEcccCCCCCCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence            345677888644456899999998754321 1126899999999999999999999999999999999999999999999


Q ss_pred             hcCCCeEEEEEEeCCc
Q psy1156         464 SSGPLNMDLLISRTSL  479 (671)
Q Consensus       464 ~~~g~~V~L~V~R~~~  479 (671)
                      +..+..+.|+|.|.+.
T Consensus        90 ~~~g~~v~l~v~R~~~  105 (108)
T 2jre_A           90 RNAGNPVRLLLIRRLP  105 (108)
T ss_dssp             HHHCSEEEEEEEECCC
T ss_pred             HcCCCeEEEEEEeCCc
Confidence            8778899999998764

>2ego_A General receptor for phosphoinositides 1- associated scaffold protein; PDZ domain, ligand-free, protein binding; 1.80A {Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A

Probab=99.29  E-value=2.3e-11  Score=105.95  Aligned_cols=89  Identities=24%  Similarity=0.257  Sum_probs=73.0

Q ss_pred             CeEEEEEEeCCCCCcccEEEee-ecCCCC--CCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHH
Q psy1156         387 GQTMVRVNRRDFNEELGIYIAK-IKNSSE--GNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSII  463 (671)
Q Consensus       387 ~~~~V~L~k~~~~~~LGfsI~g-g~~~~~--g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L  463 (671)
                      ..++|+|.|.. .++|||+|.+ +.....  ....+++|..|.++|||+++| |++||+|++|||+.+.++++.++..+|
T Consensus         4 ~~r~v~l~k~~-~~~~Gf~l~~~g~~~~~~~~~~~~~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~l   81 (96)
T 2ego_A            4 QRKVLTLEKGD-NQTFGFEIQTYGLHHREEQRVEMVTFVARVHESSPAQLAG-LTPGDTIASVNGLNVEGIRHREIVDII   81 (96)
T ss_dssp             CEEEEEEECCT-TCCCSEEEEEEEC-------CCEEEEEEEECTTCHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHH
T ss_pred             ccEEEEEEeCC-CCCccEEEEeccccccCCCCCCCCeEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHH
Confidence            45889998853 6799999997 211000  001589999999999999999 999999999999999999999999999


Q ss_pred             hcCCCeEEEEEEeC
Q psy1156         464 SSGPLNMDLLISRT  477 (671)
Q Consensus       464 ~~~g~~V~L~V~R~  477 (671)
                      +..+..+.|+|.+.
T Consensus        82 ~~~~~~v~l~v~~~   95 (96)
T 2ego_A           82 KASGNVLRLETLYG   95 (96)
T ss_dssp             HHTTTEEEEEEECC
T ss_pred             HhCCCeEEEEEEEC
Confidence            97778999998763

>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3, DLG3-human presynaptic protein, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.28  E-value=1.2e-11  Score=110.38  Aligned_cols=86  Identities=38%  Similarity=0.607  Sum_probs=75.7

Q ss_pred             cceeeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhc
Q psy1156         574 CTFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTI  653 (671)
Q Consensus       574 ~~~~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~s  653 (671)
                      ...+.|.|.+..  .+|||.|.++.+.    .|++|..|.+++||+++|+|++||+|++|||++|.++++.+++.+++..
T Consensus        14 ~~~~~v~l~k~~--~glG~~l~~~~~~----~gv~V~~V~~~s~A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~~~~~   87 (113)
T 1um7_A           14 REPRKIILHKGS--TGLGFNIVGGEDG----EGIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNATHEQAAAALKRA   87 (113)
T ss_dssp             CSEEEEEEECCS--SCSSBCCBCCSTT----CCCBCCCBCSSSHHHHTTCCCTTCEEEEESSCBCTTCCHHHHHHHHHSC
T ss_pred             CceEEEEEEECC--CcccEEEEeccCC----CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence            356789998875  7899999987652    4899999999999999999999999999999999999999999999876


Q ss_pred             CCCcEEEEEEeCC
Q psy1156         654 KNGSISLHICRRL  666 (671)
Q Consensus       654 g~~~VtL~V~Rr~  666 (671)
                      + ..|.|+|.|+.
T Consensus        88 ~-~~v~l~v~r~~   99 (113)
T 1um7_A           88 G-QSVTIVAQYRP   99 (113)
T ss_dssp             C-SEEEEEEECCH
T ss_pred             C-CcEEEEEEECc
Confidence            4 78999998864

>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; structural genomi consortium, SGC, ATP-binding, cell junction; 1.60A {Homo sapiens}

Probab=99.28  E-value=1.6e-11  Score=104.91  Aligned_cols=83  Identities=31%  Similarity=0.503  Sum_probs=68.9

Q ss_pred             ceeeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhc-
Q psy1156         575 TFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTI-  653 (671)
Q Consensus       575 ~~~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~s-  653 (671)
                      +.++|+|.|..  .+|||.+.+..+.    .|++|..| ++|||+ +| |++||+|++|||+++.++++.+++.+|+.. 
T Consensus         3 ~~~~v~l~k~~--~g~G~~~~~~~~~----~~~~v~~v-~~spA~-aG-l~~GD~I~~vng~~v~~~~~~~~~~~l~~~~   73 (88)
T 3bpu_A            3 ELITVHIVKGP--MGFGFTIADSPGG----GGQRVKQI-VDSPRS-RG-LKEGDLIVEVNKKNVQALTHNQVVDMLVESP   73 (88)
T ss_dssp             EEEEEEEECBT--TBSSCEEEECTTS----SSEEEEEC-CC--CC-TT-CCTTCEEEEETTEECTTSCHHHHHHHHHTSC
T ss_pred             cEEEEEEEcCC--CceeEEEEecCCC----CcEEEEEe-cCChhH-hC-CCCCCEEEEECCEEcCCCCHHHHHHHHHhCC
Confidence            45788999986  7999999876442    48899887 999999 88 999999999999999999999999999863 


Q ss_pred             CCCcEEEEEEeCC
Q psy1156         654 KNGSISLHICRRL  666 (671)
Q Consensus       654 g~~~VtL~V~Rr~  666 (671)
                      ....|.|+|.|+.
T Consensus        74 ~g~~v~l~v~R~g   86 (88)
T 3bpu_A           74 KGSEVTLLVQRQT   86 (88)
T ss_dssp             TTCEEEEEEEEEC
T ss_pred             CCCEEEEEEEeCC
Confidence            3468999998864

>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.28  E-value=5.7e-12  Score=111.26  Aligned_cols=87  Identities=21%  Similarity=0.350  Sum_probs=75.7

Q ss_pred             CeEEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhcC
Q psy1156         387 GQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSG  466 (671)
Q Consensus       387 ~~~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~~  466 (671)
                      ..+.|.|.+.  ..+|||.+.++.+..    .+++|..|.+++||+++|+|++||+|++|||+.|.++++.+++.+|+..
T Consensus         9 ~~~~v~l~~~--~~g~G~~i~~g~~~~----~~~~V~~V~~~spA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~   82 (103)
T 1uep_A            9 KELDVHLRRM--ESGFGFRILGGDEPG----QPILIGAVIAMGSADRDGRLHPGDELVYVDGIPVAGKTHRYVIDLMHHA   82 (103)
T ss_dssp             EEECCEEESS--SSSCCEEECCCCSTT----SCCBEEEECTTSTTGGGTCCCTTCEEEEETTEECTTSCHHHHHHHHHHH
T ss_pred             eEEEEEEEeC--CCccCEEEeeecCCC----CCeEEEEeCCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence            4566778774  478999999876533    6899999999999999999999999999999999999999999999865


Q ss_pred             --CCeEEEEEEeCCc
Q psy1156         467 --PLNMDLLISRTSL  479 (671)
Q Consensus       467 --g~~V~L~V~R~~~  479 (671)
                        +..|.|+|.|...
T Consensus        83 ~~g~~v~l~v~R~~~   97 (103)
T 1uep_A           83 ARNGQVNLTVRRKVL   97 (103)
T ss_dssp             HHHTEEEEEEEEECC
T ss_pred             CCCCcEEEEEEeCCC
Confidence              7899999998654

>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.28  E-value=5.1e-12  Score=112.92  Aligned_cols=93  Identities=24%  Similarity=0.313  Sum_probs=78.8

Q ss_pred             CCeEEEEEEeCCCCCcccEEEeeecCCCC-----CCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHH
Q psy1156         386 EGQTMVRVNRRDFNEELGIYIAKIKNSSE-----GNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAK  460 (671)
Q Consensus       386 ~~~~~V~L~k~~~~~~LGfsI~gg~~~~~-----g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av  460 (671)
                      ..++.|.|.+. .+++|||+|.++.+...     ....|++|..|.+++||+++|+|++||+|++|||+.|.++++.+++
T Consensus         8 ~~~~~v~l~k~-~~~~lG~~i~gg~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~   86 (111)
T 1uju_A            8 PGLRELCIQKA-PGERLGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRLRVGLRLLEVNQQSLLGLTHGEAV   86 (111)
T ss_dssp             CSSSCEEEECC-TTCCCCEEEECCSSSSCSCSSCTTCCCCEEEEECTTSHHHHHSSCCTTCBCCBBSSCBCTTSCHHHHH
T ss_pred             CccEEEEEEEC-CCCccCEEEECCccccccccccCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHH
Confidence            35678898874 46899999998764210     1126899999999999999999999999999999999999999999


Q ss_pred             HHHhcCCCeEEEEEEeCCc
Q psy1156         461 SIISSGPLNMDLLISRTSL  479 (671)
Q Consensus       461 ~~L~~~g~~V~L~V~R~~~  479 (671)
                      .+++..+..+.|+|.|...
T Consensus        87 ~~l~~~g~~v~l~v~r~~~  105 (111)
T 1uju_A           87 QLLRSVGDTLTVLVCDGFE  105 (111)
T ss_dssp             HHHSSCSSEEEECCCCCCC
T ss_pred             HHHHcCCCeEEEEEEECCC
Confidence            9999888899999988654

>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L homolog; PDZ domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.28  E-value=2.5e-11  Score=110.57  Aligned_cols=92  Identities=25%  Similarity=0.320  Sum_probs=77.6

Q ss_pred             ceeeEEEeeCCCCCcccEEEecCCCCC-CCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhc
Q psy1156         575 TFHTIVFEKGPGKKGLGFTIVGGKDSP-RGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTI  653 (671)
Q Consensus       575 ~~~~V~L~K~~g~~~LGfsL~Gg~ds~-~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~s  653 (671)
                      ..+.|.|.+.. ..+|||.|.++.... ....+++|..|.+++||+++|.|++||+|++|||++|.++++.+++.+|+..
T Consensus        15 ~~~~v~l~k~~-~~glG~~l~~~~~~~~~~~~~~~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~~   93 (122)
T 1v5q_A           15 ETTEVVLTADP-VTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDS   93 (122)
T ss_dssp             EEEEEEECCCS-SSSSCEEEECCSCCSSSCSSCCEEEEECTTSHHHHSCCCCTTCCEEEETTEESSSSCHHHHHHHHHHH
T ss_pred             eeEEEEEEeCC-CCccCEEEecccccCCcCCCCcEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence            56678888875 489999999873221 1235799999999999999999999999999999999988999999999987


Q ss_pred             C-CCcEEEEEEeCCC
Q psy1156         654 K-NGSISLHICRRLK  667 (671)
Q Consensus       654 g-~~~VtL~V~Rr~~  667 (671)
                      . ...|.|+|.|+..
T Consensus        94 ~~g~~v~l~v~R~~~  108 (122)
T 1v5q_A           94 SITSKVTLEIEFDVA  108 (122)
T ss_dssp             TTTTCEEEEEEEECC
T ss_pred             CCCCeEEEEEEECCc
Confidence            4 4689999999765

>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere, structural protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 1wjl_A

Probab=99.28  E-value=1.2e-11  Score=104.72  Aligned_cols=82  Identities=20%  Similarity=0.312  Sum_probs=71.3

Q ss_pred             EEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhcCCC
Q psy1156         389 TMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPL  468 (671)
Q Consensus       389 ~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~~g~  468 (671)
                      +.|+|..   ..+|||.+.++.+..    .|++|..|.++|||+++| |++||+|++|||+.+.++++.++...++..+.
T Consensus         3 ~~v~l~~---~~~~G~~l~gg~~~~----~~v~V~~V~~~spA~~aG-l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~   74 (85)
T 1rgw_A            3 YSVTLTG---PGPWGFRLQGGKDFN----MPLTISRITPGSKAAQSQ-LSQGDLVVAIDGVNTDTMTHLEAQNKIKSASY   74 (85)
T ss_dssp             EEEEECC---SSCCCEEECCCGGGT----SCCBEEEECTTSHHHHSS-CCCCSBEEEETTEECTTCCHHHHHHHHTTCSS
T ss_pred             EEEEEeC---CCccCEEEEeccCCC----CCeEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCcCHHHHHHHHHcCCC
Confidence            4677732   378999999876543    689999999999999999 99999999999999999999999999987778


Q ss_pred             eEEEEEEeCC
Q psy1156         469 NMDLLISRTS  478 (671)
Q Consensus       469 ~V~L~V~R~~  478 (671)
                      .+.|+|.|.+
T Consensus        75 ~v~l~v~R~~   84 (85)
T 1rgw_A           75 NLSLTLQKSK   84 (85)
T ss_dssp             CEEEEEESCC
T ss_pred             eEEEEEEeCC
Confidence            8999998864

>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain, ptpase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.27  E-value=1.2e-11  Score=111.89  Aligned_cols=89  Identities=18%  Similarity=0.309  Sum_probs=77.2

Q ss_pred             CCCeEEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhc--CCCCCCCEEEccCCeeccCCCHHHHHHH
Q psy1156         385 QEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKE--GCLELGDEIISVNGQRLRGLTMTQAKSI  462 (671)
Q Consensus       385 ~~~~~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~ra--G~L~~GD~IlaVNG~~V~~~s~~~av~~  462 (671)
                      ....++|+|.|.. .++|||+|.++.+..    .|++|..|.++|||+++  | |++||+|++|||+.|.++++.+++.+
T Consensus        13 ~~~~~~v~l~k~~-~~~~G~~l~gg~~~~----~~v~V~~V~~~spA~~a~gG-L~~GD~Il~ing~~v~~~~~~~~~~~   86 (119)
T 2cs5_A           13 HDNLVLIRMKPDE-NGRFGFNVKGGYDQK----MPVIVSRVAPGTPADLCVPR-LNEGDQVVLINGRDIAEHTHDQVVLF   86 (119)
T ss_dssp             SSCCEEEEECCCS-SSCCSEEEEEEGGGT----EEEEEEEECSSSTTTSSSSC-CCTTCEEEEETTBCTTSSCHHHHHHH
T ss_pred             CCCeEEEEEEeCC-CCCcCEEEecccCCC----CCeEEEEECCCCHHHHhhcC-CCCCCEEEEECCEECCCCCHHHHHHH
Confidence            4567899998854 568999999887543    68999999999999999  7 99999999999999999999999999


Q ss_pred             HhcCC----CeEEEEEEeCCc
Q psy1156         463 ISSGP----LNMDLLISRTSL  479 (671)
Q Consensus       463 L~~~g----~~V~L~V~R~~~  479 (671)
                      ++..+    ..|.|+|.|...
T Consensus        87 ~~~~~~~~~~~v~l~v~R~~~  107 (119)
T 2cs5_A           87 IKASCERHSGELMLLVRPNAV  107 (119)
T ss_dssp             HHHHHHCCSSCEEEEEECCCC
T ss_pred             HHhccccCCCEEEEEEEcccc
Confidence            98653    489999998754

>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.27  E-value=9.7e-12  Score=109.67  Aligned_cols=85  Identities=31%  Similarity=0.516  Sum_probs=73.4

Q ss_pred             eeeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcCC
Q psy1156         576 FHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKN  655 (671)
Q Consensus       576 ~~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg~  655 (671)
                      ...|.|. +  ..+|||.|.++.+..   .|++|..|.++|||+++| |++||+|++|||+++.++++.+++.+++..+ 
T Consensus         6 ~~~v~l~-~--~~~~G~~l~gg~~~~---~~v~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~~~~~g-   77 (103)
T 1wf7_A            6 SGSVSLV-G--PAPWGFRLQGGKDFN---MPLTISSLKDGGKASQAH-VRIGDVVLSIDGISAQGMTHLEAQNKIKACT-   77 (103)
T ss_dssp             CEEEEEE-S--SSCCSCCEEEETTTT---EEEEECCCCTTCHHHHTT-CCTTCBEEEETTEECSSCCHHHHHHHHHHCS-
T ss_pred             EEEEEEe-C--CCccCEEEeccccCC---CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCC-
Confidence            4567776 3  378999999887643   579999999999999999 9999999999999999999999999998874 


Q ss_pred             CcEEEEEEeCCCC
Q psy1156         656 GSISLHICRRLKS  668 (671)
Q Consensus       656 ~~VtL~V~Rr~~~  668 (671)
                      ..|.|+|.|+...
T Consensus        78 ~~v~l~v~R~g~~   90 (103)
T 1wf7_A           78 GSLNMTLQRASAA   90 (103)
T ss_dssp             SEEEEEECCCSCC
T ss_pred             CeEEEEEEeCCCc
Confidence            7899999887653

>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster}

Probab=99.27  E-value=3.6e-11  Score=117.74  Aligned_cols=89  Identities=31%  Similarity=0.402  Sum_probs=77.5

Q ss_pred             ceeeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCC--CCHHHHHHHHHh
Q psy1156         575 TFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHD--LTHLEAISLFKT  652 (671)
Q Consensus       575 ~~~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~--lSheEAV~lLK~  652 (671)
                      ....|.|.+..  .+|||+|.++.+...+ .|++|..|.++|+|+++|+|++||+|++|||++|.+  ++|.+++.+++.
T Consensus        18 ~~~~v~~~~~~--~~lG~~i~~g~~~~~~-~g~~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~~~~~~   94 (206)
T 3r0h_A           18 KKILIELKVEK--KPMGVIVCGGKNNHVT-TGCVITHVYPEGQVAADKRLKIFDHICDINGTPIHVGSMTTLKVHQLFHT   94 (206)
T ss_dssp             SCEEEEEECTT--SCCCEEEECCSSSSCC-SCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECCGGGSCHHHHHHHHHS
T ss_pred             CEEEEEEEeCC--CCcCEEEecccCCCCC-CCeEEEEECCCChHHhcCCCCCCCEEEEECCEEcCCCccCHHHHHHHHHh
Confidence            34578888864  8999999998876432 489999999999999999999999999999999999  999999999998


Q ss_pred             cCCCc-EEEEEEeCCC
Q psy1156         653 IKNGS-ISLHICRRLK  667 (671)
Q Consensus       653 sg~~~-VtL~V~Rr~~  667 (671)
                      .+ +. |.|+|.|..+
T Consensus        95 ~~-~~~v~l~v~R~~~  109 (206)
T 3r0h_A           95 TY-EKAVTLTVFRADP  109 (206)
T ss_dssp             CC-SSEEEEEEECCSS
T ss_pred             cC-CCceEEEEEeccc
Confidence            76 55 9999998754

>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.27  E-value=9.5e-12  Score=107.96  Aligned_cols=85  Identities=28%  Similarity=0.459  Sum_probs=72.8

Q ss_pred             eEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcCCCc
Q psy1156         578 TIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKNGS  657 (671)
Q Consensus       578 ~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg~~~  657 (671)
                      .+.+.+.. ..+|||.+.++.+..   .|++|..|.++|||+++| |++||+|++|||+++.+++|.+++.+|+..+ ..
T Consensus         7 ~~~~~~~~-~~~lG~~l~~g~~~~---~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~-~~   80 (94)
T 1vb7_A            7 GLTVDVAG-PAPWGFRISGGRDFH---TPIIVTKVTERGKAEAAD-LRPGDIIVAINGQSAENMLHAEAQSKIRQSA-SP   80 (94)
T ss_dssp             CEEEEECS-SSCCSBCCEEETTTT---EEEECCCBCTTSSHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHTCC-SS
T ss_pred             EEEEEecC-CCCccEEEecccCCC---CCeEEEEECCCCHHHHCC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCC-Cc
Confidence            34454443 479999999876542   589999999999999999 9999999999999999999999999999876 88


Q ss_pred             EEEEEEeCCCC
Q psy1156         658 ISLHICRRLKS  668 (671)
Q Consensus       658 VtL~V~Rr~~~  668 (671)
                      |.|+|.|+...
T Consensus        81 v~l~v~R~g~~   91 (94)
T 1vb7_A           81 LRLQLDRSSGP   91 (94)
T ss_dssp             EEEEEECCCCC
T ss_pred             EEEEEEECCcC
Confidence            99999998654

>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=99.27  E-value=1.5e-11  Score=110.91  Aligned_cols=94  Identities=22%  Similarity=0.326  Sum_probs=80.1

Q ss_pred             CCCeEEEEEEeCCCCCcccEEEeeecCCCC----C-CcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHH
Q psy1156         385 QEGQTMVRVNRRDFNEELGIYIAKIKNSSE----G-NIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQA  459 (671)
Q Consensus       385 ~~~~~~V~L~k~~~~~~LGfsI~gg~~~~~----g-~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~a  459 (671)
                      ..+.++|.|.+. .+++|||+|.++.+...    + ...|++|..|.++|||+++|+|++||+|++|||+.|.++++.++
T Consensus        13 ~~~~~~v~l~k~-~~~~lG~~i~gg~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~   91 (117)
T 2ehr_A           13 WGPPRIVEIFRE-PNVSLGISIVGGQTVIKRLKNGEELKGIFIKQVLEDSPAGKTNALKTGDKILEVSGVDLQNASHSEA   91 (117)
T ss_dssp             BCCCEEEEECCC-SSSCCCEEECCCCSCCCSSCCCSCCCSEEEEEECSSSTTTSSCSCCTTCEEEEESSCBCTTCCHHHH
T ss_pred             CCCCEEEEEEeC-CCCccCEEEeCCcccccccccCCCcCCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHHHH
Confidence            346689999885 46899999998865321    0 12689999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCCeEEEEEEeCCc
Q psy1156         460 KSIISSGPLNMDLLISRTSL  479 (671)
Q Consensus       460 v~~L~~~g~~V~L~V~R~~~  479 (671)
                      +.+++..+..+.|+|.|...
T Consensus        92 ~~~~~~~g~~v~l~v~r~~~  111 (117)
T 2ehr_A           92 VEAIKNAGNPVVFIVQSLSS  111 (117)
T ss_dssp             HHHHHTSCSSEEEEECCBSC
T ss_pred             HHHHHcCCCeEEEEEEECCC
Confidence            99999888999999987654

>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane protein 25, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.27  E-value=2.1e-11  Score=110.59  Aligned_cols=92  Identities=26%  Similarity=0.349  Sum_probs=79.0

Q ss_pred             CCeEEEEEEeCCCCCcccEEEeeecCCCCC-CcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHh
Q psy1156         386 EGQTMVRVNRRDFNEELGIYIAKIKNSSEG-NIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIIS  464 (671)
Q Consensus       386 ~~~~~V~L~k~~~~~~LGfsI~gg~~~~~g-~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~  464 (671)
                      ...+.|+|.+..  .+|||+|.++.+.... ...|++|..|.+++||+++|.|++||+|++|||+.|.++++.+++.+++
T Consensus        16 ~~~~~v~l~r~~--~~lG~~i~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~~~   93 (120)
T 2eno_A           16 VTEEEINLTRGP--SGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFR   93 (120)
T ss_dssp             EEEEEEEEECCS--SSCSEEEECCTTTCSSSSCCSEEEEEECSSSHHHHSCCSCTTCEEEEETTEECCSCCHHHHHHHHH
T ss_pred             CceEEEEEEECC--CCCCEEEecccCCccccCCCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            356789998854  8999999987654210 1268999999999999999999999999999999999999999999998


Q ss_pred             cCCCeEEEEEEeCCc
Q psy1156         465 SGPLNMDLLISRTSL  479 (671)
Q Consensus       465 ~~g~~V~L~V~R~~~  479 (671)
                      ..+..|.|+|.|...
T Consensus        94 ~~g~~v~l~v~R~~~  108 (120)
T 2eno_A           94 NAGYAVSLRVQHRLQ  108 (120)
T ss_dssp             HHCSEEEEEEEEEEE
T ss_pred             cCCCeEEEEEEeCCc
Confidence            778899999998765

>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm, phosphoprotein, transport protein, CAsp; 2.60A {Homo sapiens} PDB: 2eej_A

Probab=99.27  E-value=6.8e-12  Score=108.10  Aligned_cols=85  Identities=25%  Similarity=0.359  Sum_probs=72.7

Q ss_pred             CeEEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhcC
Q psy1156         387 GQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSG  466 (671)
Q Consensus       387 ~~~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~~  466 (671)
                      ..++|+|.|..  .+|||++.+....     .|++|..|.++|||+++| |++||+|++|||+++.++++.++..+|+..
T Consensus         3 ~pr~v~l~k~~--~~~G~~l~~~~~~-----~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~   74 (91)
T 2vsp_A            3 KPKLCRLAKGE--NGYGFHLNAIRGL-----PGSFIKEVQKGGPADLAG-LEDEDVIIEVNGVNVLDEPYEKVVDRIQSS   74 (91)
T ss_dssp             CEEEEEEECBT--TBTSCCCBCCTTC-----SCCBC-CCCTTSHHHHTT-CCTTCEEEEETTEECTTSCHHHHHHHHTTS
T ss_pred             CcEEEEEEeCC--CcccEEEEeccCC-----CCeEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence            46889999865  5899999875433     689999999999999999 999999999999999999999999999977


Q ss_pred             CCeEEEEEEeCCc
Q psy1156         467 PLNMDLLISRTSL  479 (671)
Q Consensus       467 g~~V~L~V~R~~~  479 (671)
                      +..+.|+|.|.+.
T Consensus        75 g~~v~l~v~r~~~   87 (91)
T 2vsp_A           75 GKNVTLLVCGKKA   87 (91)
T ss_dssp             CSEEEEEEEC---
T ss_pred             CCEEEEEEEeCCc
Confidence            8899999998654

>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain, adaptor protein, SR-BI, signaling protein; 1.30A {Mus musculus} SCOP: b.36.1.0 PDB: 3r69_A*

Probab=99.27  E-value=1.9e-11  Score=105.63  Aligned_cols=85  Identities=24%  Similarity=0.393  Sum_probs=73.8

Q ss_pred             CeEEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhcC
Q psy1156         387 GQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSG  466 (671)
Q Consensus       387 ~~~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~~  466 (671)
                      ..+.|+|.+..  .+|||.+.++...     .+++|..|.++|||+++| |++||+|++|||+.+.++++.+++.+|+..
T Consensus         5 ~~r~v~l~~~~--~~~G~~l~~~~~~-----~~~~V~~v~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~   76 (95)
T 3r68_A            5 QPRVVVIKKGS--NGYGFYLRAGPEQ-----KGQIIKDIEPGSPAEAAG-LKNNDLVVAVNGKSVEALDHDGVVEMIRKG   76 (95)
T ss_dssp             CCEEEEEECBT--TBCSCEEEEC--C-----CSEEEECCCTTSHHHHHT-CCTTEEEEEETTEECTTCCHHHHHHHHHTT
T ss_pred             CcEEEEEecCC--CcccEEEEecCCC-----CCEEEEEECCCCHHHHCC-CCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence            45789998854  8999999976543     589999999999999999 999999999999999999999999999988


Q ss_pred             CCeEEEEEEeCCc
Q psy1156         467 PLNMDLLISRTSL  479 (671)
Q Consensus       467 g~~V~L~V~R~~~  479 (671)
                      ++.+.+++.|...
T Consensus        77 ~~~~~~~~~r~~~   89 (95)
T 3r68_A           77 GDQTTLLVLDKEL   89 (95)
T ss_dssp             TTEEEEEEEECC-
T ss_pred             CCeEEEEEECCcc
Confidence            8899999887654

>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.27  E-value=1.5e-11  Score=109.26  Aligned_cols=88  Identities=32%  Similarity=0.417  Sum_probs=74.9

Q ss_pred             CeEEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhc-
Q psy1156         387 GQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISS-  465 (671)
Q Consensus       387 ~~~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~-  465 (671)
                      ..+.|.|.+.  ..+|||+|.++.+...   ..++|..|.+++||+++|+|++||+|++|||+++.+++|++++.+|+. 
T Consensus         6 ~~~~v~l~k~--~~glG~~i~gg~~~~~---~~~~I~~v~~~s~A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~   80 (103)
T 1ufx_A            6 SGTLVRVKKS--AATLGIAIEGGANTRQ---PLPRIVTIQRGGSAHNCGQLKVGHVILEVNGLTLRGKEHREAARIIAEA   80 (103)
T ss_dssp             SSEEEEEECC--SSSCCEEEECBTTSSC---SSCEEEEECTTSHHHHHCSSCTTCBCCEETTEECTTCBHHHHHHHHHHH
T ss_pred             ceEEEEEEcC--CCcCCeEEECCCCCCC---CcEEEEEeCCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHHh
Confidence            3567888664  4899999998876431   345999999999999999999999999999999999999999999985 


Q ss_pred             ----CCCeEEEEEEeCCc
Q psy1156         466 ----GPLNMDLLISRTSL  479 (671)
Q Consensus       466 ----~g~~V~L~V~R~~~  479 (671)
                          .+..+.|+|.|...
T Consensus        81 ~~~~~~~~i~l~v~r~~~   98 (103)
T 1ufx_A           81 FKTKDRDYIDFLVTEFNS   98 (103)
T ss_dssp             HHCSSCSEEEEEECCCCC
T ss_pred             cccCCCCeEEEEEEEccc
Confidence                57789999988654

>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.27  E-value=2.8e-11  Score=107.05  Aligned_cols=86  Identities=20%  Similarity=0.326  Sum_probs=75.9

Q ss_pred             CeEEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhcC
Q psy1156         387 GQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSG  466 (671)
Q Consensus       387 ~~~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~~  466 (671)
                      ..+.|+|.+. ..++|||.+.++.+..    .|++|..|.+++||+++| |++||+|++|||+.|.++++.+++.+|+. 
T Consensus        15 ~~~~v~l~k~-~~~~lG~~~~~~~~~~----~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~l~~-   87 (104)
T 1wi2_A           15 LPRIVTLKKP-PGAQLGFNIRGGKASQ----LGIFISKVIPDSDAHRAG-LQEGDQVLAVNDVDFQDIEHSKAVEILKT-   87 (104)
T ss_dssp             CCEEEEECCC-TTCCCSEEEECCSSSC----CCCEEEEECTTSHHHHHT-CCTTCEEEEETTEECSSCCHHHHHHHHHH-
T ss_pred             CCEEEEEEeC-CCCCccEEEEcccCCC----CCEEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhC-
Confidence            4588999885 4589999999876543    689999999999999999 99999999999999999999999999997 


Q ss_pred             CCeEEEEEEeCCc
Q psy1156         467 PLNMDLLISRTSL  479 (671)
Q Consensus       467 g~~V~L~V~R~~~  479 (671)
                      +..+.|+|.|...
T Consensus        88 ~~~v~l~v~r~~~  100 (104)
T 1wi2_A           88 AREISMRVRFFSG  100 (104)
T ss_dssp             SSSEEEEEECCCC
T ss_pred             CCEEEEEEEECCC
Confidence            7889999988654

>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3, microtubule associated serine/threonine kinase 3, PDZ domain, structural genomics; 1.20A {Homo sapiens} PDB: 2w7r_A 2kqf_A 2kyl_A 3ps4_A

Probab=99.26  E-value=2.3e-11  Score=106.24  Aligned_cols=86  Identities=27%  Similarity=0.342  Sum_probs=71.3

Q ss_pred             eEEEeeCCCCCcccEEEecCCCCCC----CCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhc
Q psy1156         578 TIVFEKGPGKKGLGFTIVGGKDSPR----GAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTI  653 (671)
Q Consensus       578 ~V~L~K~~g~~~LGfsL~Gg~ds~~----g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~s  653 (671)
                      +|.|.+..  .+|||.+.++.....    ...|++|..|.++|||+++| |++||+|++|||+++.++++.+++.+|+..
T Consensus         5 ~v~l~~~~--~~~Gf~l~~~~~~~~~~~~~~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~   81 (99)
T 3khf_A            5 PIVIHSSG--KKYGFSLRAIRVYMGDSDVYTVHHVVWSVEDGSPAQEAG-LRAGDLITHINGESVLGLVHMDVVELLLKS   81 (99)
T ss_dssp             CEEEEC-C--CCCCEEEEEEEEESSSSSCEEEEEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHHS
T ss_pred             CEEEEeCC--CCCcEEEEecccccCccccccCCeEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhcC
Confidence            57777764  899999987643211    12377999999999999999 999999999999999999999999999976


Q ss_pred             CCCcEEEEEEeCCC
Q psy1156         654 KNGSISLHICRRLK  667 (671)
Q Consensus       654 g~~~VtL~V~Rr~~  667 (671)
                      + ..|.|+|.|...
T Consensus        82 g-~~v~l~v~r~~~   94 (99)
T 3khf_A           82 G-NKISLRTTALEN   94 (99)
T ss_dssp             C-SEEEEEEECSCS
T ss_pred             C-CEEEEEEEECCC
Confidence            4 789999988654

>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane protein; NMR {Homo sapiens} PDB: 2ev8_A

Probab=99.26  E-value=2.3e-11  Score=107.38  Aligned_cols=83  Identities=22%  Similarity=0.429  Sum_probs=73.5

Q ss_pred             eEEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhcCC
Q psy1156         388 QTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGP  467 (671)
Q Consensus       388 ~~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~~g  467 (671)
                      ++.|.|.|. .+++|||++....+      .|++|..|.++|||+++|+|++||+|++|||++|.++++.+++.+|+..+
T Consensus        13 ~~~v~l~K~-~~~~lG~~l~~~~~------~gv~V~~V~~gspA~~aG~L~~GD~Il~ING~~v~~~~~~~~~~~l~~~~   85 (97)
T 2ejy_A           13 VRLIQFEKV-TEEPMGICLKLNEK------QSCTVARILHGGMIHRQGSLHVGDEILEINGTNVTNHSVDQLQKAMKETK   85 (97)
T ss_dssp             CEEEEEEEC-SSSCCSEEEEECTT------CCEEEEEECSSSHHHHHTCCCTTCEEEEETTBCCCSSCSHHHHHHHHHCC
T ss_pred             cEEEEEEeC-CCCCeeEEEEeCCC------CCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            478999885 46899999986432      68999999999999999999999999999999999999999999999778


Q ss_pred             CeEEEEEEeC
Q psy1156         468 LNMDLLISRT  477 (671)
Q Consensus       468 ~~V~L~V~R~  477 (671)
                      +.+.|+|.+.
T Consensus        86 ~~v~L~V~~~   95 (97)
T 2ejy_A           86 GMISLKVIPN   95 (97)
T ss_dssp             EEEEEEEECC
T ss_pred             CeEEEEEEEC
Confidence            8899998753

>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.26  E-value=2e-11  Score=107.56  Aligned_cols=91  Identities=27%  Similarity=0.444  Sum_probs=78.2

Q ss_pred             CCCeEEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHh
Q psy1156         385 QEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIIS  464 (671)
Q Consensus       385 ~~~~~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~  464 (671)
                      ....+.|.|.+..  .+|||.|.++.+.. +. .+++|..|.+++||+++|.|++||+|++|||+.|.++++.+++.+++
T Consensus         9 ~~~~~~v~l~~~~--~g~G~~l~~~~~~~-~~-~~v~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~   84 (104)
T 2djt_A            9 ASGHFSVELVRGY--AGFGLTLGGGRDVA-GD-TPLAVRGLLKDGPAQRCGRLEVGDLVLHINGESTQGLTHAQAVERIR   84 (104)
T ss_dssp             CCCCEEEEEECCS--SSCCEEEECCEETT-EE-CCCEEEEECTTCHHHHHCSCCTTCBEEEETTEECTTCCHHHHHHHHH
T ss_pred             CCceEEEEEEeCC--CCccEEEEeccCCC-CC-CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            4467889998754  79999999865431 11 68999999999999999999999999999999999999999999998


Q ss_pred             cCCCeEEEEEEeCCc
Q psy1156         465 SGPLNMDLLISRTSL  479 (671)
Q Consensus       465 ~~g~~V~L~V~R~~~  479 (671)
                      ..+..+.|+|.|.+.
T Consensus        85 ~~g~~v~l~v~R~g~   99 (104)
T 2djt_A           85 AGGPQLHLVIRRPLS   99 (104)
T ss_dssp             HTCSEEEEEECCCCC
T ss_pred             cCCCeEEEEEEECCC
Confidence            778899999988765

>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; PDZ domain, ATP-binding, cell junction, cell membrane; NMR {Homo sapiens} PDB: 2kpl_A

Probab=99.26  E-value=2.9e-11  Score=111.32  Aligned_cols=89  Identities=22%  Similarity=0.262  Sum_probs=77.8

Q ss_pred             CCCeEEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHh
Q psy1156         385 QEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIIS  464 (671)
Q Consensus       385 ~~~~~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~  464 (671)
                      ....+.|+|.+..  .+|||++.++....    .+++|..|.++|||+++|+|++||+|++|||+.|.++++.+++.+|+
T Consensus        16 ~g~~~~v~l~~~~--~g~G~~i~g~~~~~----~~v~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~l~   89 (129)
T 2kpk_A           16 KGKFIHTKLRKSS--RGFGFTVVGGDEPD----EFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKIFQ   89 (129)
T ss_dssp             CSEEEEEEEEECS--SCCSEEEEEEEETT----EEEEEEEECTTSHHHHHSSCCTTCEEEEETTEECTTSCHHHHHHHHH
T ss_pred             CCcEEEEEEEECC--CcccEEEeCccCCC----CCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            4566788888854  79999999866432    67999999999999999999999999999999999999999999998


Q ss_pred             cC--CCeEEEEEEeCCc
Q psy1156         465 SG--PLNMDLLISRTSL  479 (671)
Q Consensus       465 ~~--g~~V~L~V~R~~~  479 (671)
                      ..  +..|.|+|.|...
T Consensus        90 ~~~~g~~v~l~v~R~~~  106 (129)
T 2kpk_A           90 SIPIGASVDLELCRGYP  106 (129)
T ss_dssp             HSCTTEEEEEEEEECSC
T ss_pred             hCCCCCeEEEEEEeCCC
Confidence            65  6789999999764

>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural genomics, structura genomics consortium, SGC, signaling protein; 1.12A {Homo sapiens} PDB: 2pku_A

Probab=99.26  E-value=3.8e-11  Score=108.54  Aligned_cols=86  Identities=27%  Similarity=0.483  Sum_probs=73.2

Q ss_pred             ceeeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcC
Q psy1156         575 TFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIK  654 (671)
Q Consensus       575 ~~~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg  654 (671)
                      ..+.|.|.+.. .++|||.+.++.+..   .|++|..|.++|||+++|+|++||+|++|||.+|.+.++.+++.+|+..+
T Consensus        24 ~~~~V~l~~~~-~~~lG~~l~~~~~~~---~~~~V~~V~~gspA~~aG~L~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~   99 (114)
T 2gzv_A           24 VPGKVTLQKDA-QNLIGISIGGGAQYC---PCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVK   99 (114)
T ss_dssp             CCEEEEEECCT-TSCCSEEEEECCC-----CCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHCC
T ss_pred             CCEEEEEEECC-CCcEeEEEEeCCCCC---CCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            34688998886 467999999876532   47999999999999999999999999999999998889999999999875


Q ss_pred             CCcEEEEEEeC
Q psy1156         655 NGSISLHICRR  665 (671)
Q Consensus       655 ~~~VtL~V~Rr  665 (671)
                       +.|.|+|.+.
T Consensus       100 -~~v~l~v~~~  109 (114)
T 2gzv_A          100 -GEVTIHYNKL  109 (114)
T ss_dssp             -SEEEEEEECC
T ss_pred             -CeEEEEEEec
Confidence             6788888543

>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding, protein-binding, RHOB, nitration, cytoplasm, PDZ domain, CAsp8; 1.82A {Homo sapiens}

Probab=99.26  E-value=2.8e-11  Score=109.08  Aligned_cols=82  Identities=27%  Similarity=0.371  Sum_probs=71.2

Q ss_pred             eeeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcCC
Q psy1156         576 FHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKN  655 (671)
Q Consensus       576 ~~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg~  655 (671)
                      .+.|.|.|++  .+|||.+.+.       .|++|..|.++|||+++| |++||+|++|||++|..+++.+++++|+..+.
T Consensus        24 ~r~v~l~k~~--~~~G~~l~~~-------~~v~V~~V~~gspA~~AG-L~~GD~Il~VnG~~v~~~~~~dv~~~i~~~~~   93 (109)
T 2vsv_A           24 PRSIRFTAEE--GDLGFTLRGN-------APVQVHFLDPYCSASVAG-AREGDYIVSIQLVDCKWLTLSEVMKLLKSFGE   93 (109)
T ss_dssp             CEEEEECCGG--GCCCEEEESS-------SSCEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHHTTTT
T ss_pred             CEEEEEEeCC--CceeEEEeCC-------CCeEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCC
Confidence            3578998875  8999999754       368999999999999999 99999999999999999999999999998764


Q ss_pred             CcEEEEEEeCCC
Q psy1156         656 GSISLHICRRLK  667 (671)
Q Consensus       656 ~~VtL~V~Rr~~  667 (671)
                      ..|.|+|.|...
T Consensus        94 ~~v~l~V~~~~~  105 (109)
T 2vsv_A           94 DEIEMKVVSLLD  105 (109)
T ss_dssp             SCEEEEEESCC-
T ss_pred             CeEEEEEEECCC
Confidence            459999988753

>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3, human, structural genomics, structural GE consortium, SGC, signaling protein; 2.39A {Homo sapiens} SCOP: b.36.1.1

Probab=99.26  E-value=3.4e-11  Score=103.79  Aligned_cols=82  Identities=23%  Similarity=0.289  Sum_probs=72.3

Q ss_pred             CeEEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhcC
Q psy1156         387 GQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSG  466 (671)
Q Consensus       387 ~~~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~~  466 (671)
                      .+++|+|.+..  .+|||.+.+.        .|++|..|.++|||+++| |++||+|++|||+.+.++++.++..+++..
T Consensus         3 ~~r~v~l~~~~--~g~G~~l~~~--------~~~~V~~V~~~spA~~aG-l~~GD~I~~vng~~v~~~~~~~~~~~l~~~   71 (91)
T 2f5y_A            3 RYRQITIPRGK--DGFGFTICCD--------SPVRVQAVDSGGPAERAG-LQQLDTVLQLNERPVEHWKCVELAHEIRSC   71 (91)
T ss_dssp             EEEEEEEECBT--TBTSEEEECS--------SSCEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHTC
T ss_pred             ceEEEEEEeCC--CCccEEEecC--------CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence            35789998854  7899999752        579999999999999999 999999999999999999999999999877


Q ss_pred             CCeEEEEEEeCCc
Q psy1156         467 PLNMDLLISRTSL  479 (671)
Q Consensus       467 g~~V~L~V~R~~~  479 (671)
                      +..+.|+|.|.+.
T Consensus        72 ~~~v~l~v~R~~~   84 (91)
T 2f5y_A           72 PSEIILLVWRMVP   84 (91)
T ss_dssp             SSEEEEEEEECC-
T ss_pred             CCeEEEEEEeCCC
Confidence            7889999999764

>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor (LCF), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.2

Probab=99.26  E-value=2.7e-11  Score=109.47  Aligned_cols=93  Identities=24%  Similarity=0.411  Sum_probs=77.3

Q ss_pred             CCCeEEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHh
Q psy1156         385 QEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIIS  464 (671)
Q Consensus       385 ~~~~~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~  464 (671)
                      ...++.|.|.+. ...+|||.|.++.+..  . .|++|..|.+++||+++|+|++||+|++|||+.|.++++.+++.+++
T Consensus        13 ~~~~~~v~l~~~-~~~~lG~~i~g~~~~~--~-~gv~V~~V~~~spA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~   88 (119)
T 1x6d_A           13 LDGIHVTILHKE-EGAGLGFSLAGGADLE--N-KVITVHRVFPNGLASQEGTIQKGNEVLSINGKSLKGTTHHDALAILR   88 (119)
T ss_dssp             CTTEEEEEEECC-TTSCCSEEEECCSSSS--C-SSCEEEEECSSSHHHHHTSSCTTCBCCEETTEECSSCCHHHHHHHHH
T ss_pred             CCCeEEEEEEeC-CCCccCEEEeCCCCCC--C-CCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            456788888774 4689999999876531  1 68999999999999999999999999999999999999999999998


Q ss_pred             cCCC-eEEEEEEeCCccc
Q psy1156         465 SGPL-NMDLLISRTSLKK  481 (671)
Q Consensus       465 ~~g~-~V~L~V~R~~~~~  481 (671)
                      ..+. .+.|+|.|.+...
T Consensus        89 ~~~~~~~~l~v~R~~~~~  106 (119)
T 1x6d_A           89 QAREPRQAVIVTRKLTPE  106 (119)
T ss_dssp             HTTSSSEEEEEEECCCSS
T ss_pred             hCCCCeEEEEEEcCCCcc
Confidence            6544 4568888876643

>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation, leucine-rich repeat, alternative splicing, cytoplasm, circletail, coiled coil; 1.30A {Homo sapiens}

Probab=99.25  E-value=5.3e-11  Score=103.27  Aligned_cols=89  Identities=25%  Similarity=0.417  Sum_probs=75.4

Q ss_pred             eEEEEEEeCCCCCcccEEEeeecCCCC--CCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhc
Q psy1156         388 QTMVRVNRRDFNEELGIYIAKIKNSSE--GNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISS  465 (671)
Q Consensus       388 ~~~V~L~k~~~~~~LGfsI~gg~~~~~--g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~  465 (671)
                      .+.+.+.+.  .++|||+|.++.+...  ....|++|..|.++|||+++| |++||+|++|||+.+.++.+.+++..++.
T Consensus         4 ~~~v~~~~~--~~glG~~i~~g~~~~~~~~~~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~~~~   80 (97)
T 2w4f_A            4 ELTLTILRQ--TGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAG-VRVGDKLLEVNGVALQGAEHHEAVEALRG   80 (97)
T ss_dssp             EEEEEEECB--TTBSSEEEEECTTSCCSBTTBCSEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHT
T ss_pred             EEEEEEEeC--CCceeEEEECCccCCcccCCCCCEEEEEECCCChHHHcC-CCCCCEEEEECCEECCCcCHHHHHHHHhC
Confidence            356777775  4899999998765321  112789999999999999999 99999999999999999999888888877


Q ss_pred             CCCeEEEEEEeCCc
Q psy1156         466 GPLNMDLLISRTSL  479 (671)
Q Consensus       466 ~g~~V~L~V~R~~~  479 (671)
                      .+..+.|+|.|.+.
T Consensus        81 ~g~~v~l~v~R~g~   94 (97)
T 2w4f_A           81 AGTAVQMRVWRERE   94 (97)
T ss_dssp             SCSEEEEEEECCSS
T ss_pred             CCCeEEEEEEeCCc
Confidence            88999999999765

>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger, oxidoreductase; 1.25A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1qav_B

Probab=99.25  E-value=6.4e-11  Score=105.66  Aligned_cols=86  Identities=26%  Similarity=0.376  Sum_probs=74.3

Q ss_pred             eeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCC-CCCCEEEEECCeecCCCCHHHHHHHHHhcCC
Q psy1156         577 HTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRL-KEGDEILAINGQVCHDLTHLEAISLFKTIKN  655 (671)
Q Consensus       577 ~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrL-r~GDrILeVNG~sV~~lSheEAV~lLK~sg~  655 (671)
                      ..|.|.++. ..+|||.+.+..+.    .|++|..|.++|||+++| | ++||+|++|||.++.++++.+++.+|+....
T Consensus         3 ~~v~l~~~~-~~glG~~~~~~~~~----~~~~V~~v~~~spA~~aG-ll~~GD~I~~ing~~v~~~~~~~~~~~l~~~~g   76 (112)
T 1qau_A            3 ISVRLFKRK-VGGLGFLVKERVSK----PPVIISDLIRGGAAEQSG-LIQAGDIILAVNDRPLVDLSYDSALEVLRGIAS   76 (112)
T ss_dssp             EEEEEECBT-TTBTSEEEEECSSS----SCEEEEEECTTSHHHHHT-CCCTTCEEEEETTEECTTSCHHHHHHHHHHSCS
T ss_pred             EEEEEEcCC-CCceeEEEEecCCC----CCEEEEEeCCCChHHHcC-CCCCCCEEEEECCEECCCCCHHHHHHHHHhCCC
Confidence            568887775 47899999876542    489999999999999999 6 9999999999999998899999999988655


Q ss_pred             CcEEEEEEeCCCC
Q psy1156         656 GSISLHICRRLKS  668 (671)
Q Consensus       656 ~~VtL~V~Rr~~~  668 (671)
                      ..+.|.|.|+...
T Consensus        77 ~~v~l~v~R~g~~   89 (112)
T 1qau_A           77 ETHVVLILRGPEG   89 (112)
T ss_dssp             SSEEEEEEECCTT
T ss_pred             CcEEEEEEeCCcc
Confidence            7899999998653

>2koj_A Partitioning defective 3 homolog; PDZ domain, structural genomics, alternative splicing, cell cycle, cell division, cell junction, coiled coil; NMR {Mus musculus} PDB: 2ogp_A

Probab=99.25  E-value=7.3e-11  Score=105.14  Aligned_cols=92  Identities=26%  Similarity=0.387  Sum_probs=77.1

Q ss_pred             CCeEEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhc
Q psy1156         386 EGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISS  465 (671)
Q Consensus       386 ~~~~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~  465 (671)
                      ...+.+.+.+.  ..+|||++.++.....+. .|++|..|.++|||+++|.|++||+|++|||+.+.++++.+++.+++.
T Consensus        10 ~~~~~~~l~~~--~~glG~~~~~~~~~~~~~-~g~~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~   86 (111)
T 2koj_A           10 GKRLNIQLKKG--TEGLGFSITSRDVTIGGS-APIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLAGKSQEEVVSLLRS   86 (111)
T ss_dssp             CEEEEEEEECB--TTBTCEEEEECSCSSSSS-SCEEEEEECSSSHHHHHCSSCTTCEEEEETTEECTTSCHHHHHHHHHH
T ss_pred             CcEEEEEEEEC--CCccCEEEEeccCCCCCC-cCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Confidence            34566777664  389999999876433233 689999999999999999999999999999999999999999999986


Q ss_pred             C--CCeEEEEEEeCCcc
Q psy1156         466 G--PLNMDLLISRTSLK  480 (671)
Q Consensus       466 ~--g~~V~L~V~R~~~~  480 (671)
                      .  +..|.|+|.|.+..
T Consensus        87 ~~~g~~v~l~v~R~~~~  103 (111)
T 2koj_A           87 TKMEGTVSLLVFRQEEA  103 (111)
T ss_dssp             CCCSSEEEEEEEECCCC
T ss_pred             CCCCCeEEEEEEeCCCC
Confidence            4  78999999997753

>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics, PDZ domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.36.1.1 PDB: 2koh_A 2k1z_A 2k20_A

Probab=99.24  E-value=1.6e-11  Score=112.88  Aligned_cols=90  Identities=28%  Similarity=0.387  Sum_probs=74.3

Q ss_pred             EEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhcC--
Q psy1156         389 TMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSG--  466 (671)
Q Consensus       389 ~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~~--  466 (671)
                      +.|.|.+ ....+|||+|.++.+.......|++|..|.++|||+++|+|++||+|++|||+.|.+++|.+++.+|+..  
T Consensus        27 ~~v~l~k-~~~~glG~~i~~~~~~~~~~~~gi~V~~V~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~  105 (127)
T 1wg6_A           27 LEIPLND-SGSAGLGVSLKGNKSRETGTDLGIFIKSIIHGGAAFKDGRLRMNDQLIAVNGETLLGKSNHEAMETLRRSMS  105 (127)
T ss_dssp             EEEECSS-STTTCCCCEEEEEEETTTTEEEEEEEEECCSSSSTHHHHTSCSCCBEEEETTEESTTSCHHHHHHHHHHHHH
T ss_pred             EEEEEee-CCCCccCeEEecccCCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHHhhc
Confidence            3455443 3468999999987643211115899999999999999999999999999999999999999999999865  


Q ss_pred             -----CCeEEEEEEeCCc
Q psy1156         467 -----PLNMDLLISRTSL  479 (671)
Q Consensus       467 -----g~~V~L~V~R~~~  479 (671)
                           +..|.|+|.|...
T Consensus       106 ~~g~~~~~v~l~v~R~~~  123 (127)
T 1wg6_A          106 MEGNIRGMIQLVILRRSG  123 (127)
T ss_dssp             HHHHHTCEEEEEEEECSC
T ss_pred             cccCCCCEEEEEEEeCCC
Confidence                 7899999999764

>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI, signaling protein; 1.80A {Mus musculus} SCOP: b.36.1.0

Probab=99.24  E-value=2.4e-11  Score=107.46  Aligned_cols=86  Identities=21%  Similarity=0.359  Sum_probs=76.2

Q ss_pred             CeEEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhcC
Q psy1156         387 GQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSG  466 (671)
Q Consensus       387 ~~~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~~  466 (671)
                      +.+.|.|.+. ++..|||.+..+...     .|++|..|.+||||+++| |++||+|++|||+.+.++++.+++.+++..
T Consensus         1 g~r~v~l~~~-~~~~~G~~l~~~~~~-----~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~   73 (106)
T 3ngh_A            1 GPRESKLSKQ-EGQNYGFFLRIEKDT-----DGHLIRVIEEGSPAEKAG-LLDGDRVLRINGVFVDKEEHAQVVELVRKS   73 (106)
T ss_dssp             CCEEEEEECC-TTCCCCCEEECCTTC-----CSCEEECCCTTSHHHHTT-CCTTCEEEEETTEECTTSCHHHHHHHHHHT
T ss_pred             CCEEEEEEeC-CCCeeCEEEEEEeCC-----CCEEEEEeCCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence            3578999885 468999999876543     689999999999999999 999999999999999999999999999888


Q ss_pred             CCeEEEEEEeCCc
Q psy1156         467 PLNMDLLISRTSL  479 (671)
Q Consensus       467 g~~V~L~V~R~~~  479 (671)
                      +..+.|+|.|.+.
T Consensus        74 g~~v~l~v~r~~~   86 (106)
T 3ngh_A           74 GNSVTLLVLDGDS   86 (106)
T ss_dssp             TTEEEEEEECHHH
T ss_pred             CCEEEEEEEECCe
Confidence            8999999998654

>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.24  E-value=7.5e-12  Score=114.68  Aligned_cols=91  Identities=25%  Similarity=0.400  Sum_probs=75.4

Q ss_pred             eeeEEEeeCCCCCcccEEEecCCCCC-------------------------CCCcceeEEEeCCCCHHhHhCCCCCCCEE
Q psy1156         576 FHTIVFEKGPGKKGLGFTIVGGKDSP-------------------------RGAIGIFIKSILDNGQAAEDGRLKEGDEI  630 (671)
Q Consensus       576 ~~~V~L~K~~g~~~LGfsL~Gg~ds~-------------------------~g~~GVfIssV~pgSpAaraGrLr~GDrI  630 (671)
                      .+.|+|.|..  .+|||.|.+.....                         ....|++|..|.++|||+++| |++||+|
T Consensus         9 ~r~v~l~r~~--~g~Gf~l~~~t~y~~~~~~~~~~~~~~~G~~~G~~~~~~~~~~gv~V~~V~~~spA~~aG-L~~GD~I   85 (126)
T 2yuy_A            9 PKTVTLKRTS--QGFGFTLRHFIVYPPESAIQFSYKDEENGNRGGKQRNRLEPMDTIFVKQVKEGGPAFEAG-LCTGDRI   85 (126)
T ss_dssp             CCCEEEECCS--SSCSCCBCCCCCCCCSSCCCSCSSSCCCCSCCCTTSCCCCCCCCCCBCCCCSSSHHHHHT-CCSSCCC
T ss_pred             CEEEEEEECC--CCcceeecCccccCCHHHHHHHHHhhcCcceeceeeecccCCCCEEEEEECCCChHHHcC-CCCCCEE
Confidence            3578999886  78999998621100                         012579999999999999999 9999999


Q ss_pred             EEECCeecCCCCHHHHHHHHHhcCCCcEEEEEEeCCCCCC
Q psy1156         631 LAINGQVCHDLTHLEAISLFKTIKNGSISLHICRRLKSKK  670 (671)
Q Consensus       631 LeVNG~sV~~lSheEAV~lLK~sg~~~VtL~V~Rr~~~~~  670 (671)
                      ++|||++|.++++.+++.+|+.. ...|.|+|.|......
T Consensus        86 ~~ing~~v~~~~~~~~~~~l~~~-g~~v~l~v~r~~~~~~  124 (126)
T 2yuy_A           86 IKVNGESVIGKTYSQVIALIQNS-DTTLELSVMPKDSGPS  124 (126)
T ss_dssp             CEETTEECSSCCHHHHHHHHHTC-TTEEEEECCCCCCCSC
T ss_pred             EEECCEECCCCCHHHHHHHHHcC-CCEEEEEEEECCCCCC
Confidence            99999999999999999999987 4789999998876543

>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics, structural genomics consort unknown function; HET: PG4; 1.50A {Homo sapiens} PDB: 2v1w_A*

Probab=99.24  E-value=4.8e-11  Score=102.60  Aligned_cols=83  Identities=18%  Similarity=0.297  Sum_probs=72.7

Q ss_pred             EEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhcCCC
Q psy1156         389 TMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPL  468 (671)
Q Consensus       389 ~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~~g~  468 (671)
                      +.|.+..   ..+|||++.++.+..    .|++|..|.++|||+++| |++||+|++|||+.+.++.+.++..+++..+.
T Consensus         5 ~~v~~~~---~~~~G~~l~~~~~~~----~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~   76 (91)
T 2pkt_A            5 QQIDLQG---PGPWGFRLVGGKDFE----QPLAISRVTPGSKAALAN-LCIGDVITAIDGENTSNMTHLEAQNRIKGCTD   76 (91)
T ss_dssp             EEEEEES---SSCCSEEEEEEGGGT----EEEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHHTCSS
T ss_pred             EEEEECC---CCCCCEEEEccCCCC----CCeEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCC
Confidence            4555543   379999999886543    689999999999999999 99999999999999999999999999998889


Q ss_pred             eEEEEEEeCCc
Q psy1156         469 NMDLLISRTSL  479 (671)
Q Consensus       469 ~V~L~V~R~~~  479 (671)
                      .+.|+|.|.+.
T Consensus        77 ~v~l~v~R~g~   87 (91)
T 2pkt_A           77 NLTLTVARSEH   87 (91)
T ss_dssp             EEEEEEEEECC
T ss_pred             eEEEEEEECCc
Confidence            99999999765

>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.24  E-value=1.6e-11  Score=107.68  Aligned_cols=87  Identities=26%  Similarity=0.523  Sum_probs=73.0

Q ss_pred             ceeeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcC
Q psy1156         575 TFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIK  654 (671)
Q Consensus       575 ~~~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg  654 (671)
                      .++.|.|.+.....+|||.|.++.+..   .|++|..|.+++||+++| |++||+|++|||++|.++++.+++.+++.. 
T Consensus         8 ~~~~v~l~~~~~~~~lG~~~~~~~~~~---~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~~~~~-   82 (101)
T 1uez_A            8 EVRLVSLRRAKAHEGLGFSIRGGSEHG---VGIYVSLVEPGSLAEKEG-LRVGDQILRVNDKSLARVTHAEAVKALKGS-   82 (101)
T ss_dssp             CCEEECCCCCCTTTCSSEEEEECTTTT---CCEEEEEECTTSHHHHHT-CCSSCCEEEETTEECSSCCHHHHHHHSSSS-
T ss_pred             ccEEEEEEECCCCCcccEEEeCCCCCC---CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCcCHHHHHHhhcCC-
Confidence            456788877555689999999876532   589999999999999999 999999999999999999998888777653 


Q ss_pred             CCcEEEEEEeCCC
Q psy1156         655 NGSISLHICRRLK  667 (671)
Q Consensus       655 ~~~VtL~V~Rr~~  667 (671)
                       ..|.|+|.|+.+
T Consensus        83 -~~v~l~v~R~g~   94 (101)
T 1uez_A           83 -KKLVLSVYSAGR   94 (101)
T ss_dssp             -SSCCEEECCCCC
T ss_pred             -CeEEEEEEECCc
Confidence             579999988754

>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.24  E-value=2.4e-11  Score=106.77  Aligned_cols=87  Identities=22%  Similarity=0.363  Sum_probs=76.2

Q ss_pred             CCCeEEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHh
Q psy1156         385 QEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIIS  464 (671)
Q Consensus       385 ~~~~~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~  464 (671)
                      ....++|+|.+..  .+|||.+.++.+.     .|++|..|.++|||+++| |++||+|++|||+.+.++++.++..+++
T Consensus         4 ~~~~r~v~l~k~~--~g~G~~l~~~~~~-----~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~   75 (102)
T 2d90_A            4 GSSGRVVVIKKGS--NGYGFYLRAGPEQ-----KGQIIKDIEPGSPAEAAG-LKNNDLVVAVNGKSVEALDHDGVVEMIR   75 (102)
T ss_dssp             CSSSEEEEEECCS--SSSSCEEEECSSS-----SSEEEECCCTTSTTTTTT-CCTTCEEEEESSCBCTTSCHHHHHHHHH
T ss_pred             CCCCEEEEEeeCC--CCccEEEEeecCC-----CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            3456889998854  7999999975432     689999999999999999 9999999999999999999999999998


Q ss_pred             cCCCeEEEEEEeCCc
Q psy1156         465 SGPLNMDLLISRTSL  479 (671)
Q Consensus       465 ~~g~~V~L~V~R~~~  479 (671)
                      ..+..+.|+|.|.+.
T Consensus        76 ~~g~~v~l~v~r~~~   90 (102)
T 2d90_A           76 KGGDQTTLLVLDKEA   90 (102)
T ss_dssp             HSTTEEEEEECSTTC
T ss_pred             cCCCEEEEEEEECCC
Confidence            778899999988654

>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.23  E-value=3.2e-11  Score=108.83  Aligned_cols=90  Identities=18%  Similarity=0.310  Sum_probs=77.0

Q ss_pred             CeEEEEEEeCCCCCcccEEEeeecCCCC---CCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHH
Q psy1156         387 GQTMVRVNRRDFNEELGIYIAKIKNSSE---GNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSII  463 (671)
Q Consensus       387 ~~~~V~L~k~~~~~~LGfsI~gg~~~~~---g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L  463 (671)
                      ..+.|.|.+. ...+|||+|.++.+...   +. .|++|..|.+++||+ +| |++||+|++|||+.|.++++.+++.++
T Consensus        14 ~~~~v~l~k~-~~~glG~~i~gg~~~~~~~~~~-~gv~V~~V~~~spA~-~g-L~~GD~I~~Vng~~v~~~~~~~~~~~l   89 (117)
T 2csj_A           14 EQYTVTLQKD-SKRGFGIAVSGGRDNPHFENGE-TSIVISDVLPGGPAD-GL-LQENDRVVMVNGTPMEDVLHSFAVQQL   89 (117)
T ss_dssp             EEEEEEEECC-SSSTTCEEEECCSSCCCCSSCC-CBCEEEEECTTSSHH-HH-BCTTCEEEEESSCBCBTCCHHHHHHHH
T ss_pred             eEEEEEEEEC-CCCccCEEEeCCcCCccccCCC-CCEEEEEECCCCccc-cc-CCCCCEEEEECCEECCCcCHHHHHHHH
Confidence            4577888874 36899999999875432   22 689999999999997 78 999999999999999999999999999


Q ss_pred             hcCCCeEEEEEEeCCcc
Q psy1156         464 SSGPLNMDLLISRTSLK  480 (671)
Q Consensus       464 ~~~g~~V~L~V~R~~~~  480 (671)
                      +..+..+.|+|.|....
T Consensus        90 ~~~~~~v~l~v~R~~~~  106 (117)
T 2csj_A           90 RKSGKIAAIVVKRPRKV  106 (117)
T ss_dssp             HHSCSEEEEEEEEEEEC
T ss_pred             hcCCCeEEEEEEECCcc
Confidence            98889999999996653

>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.23  E-value=3.8e-11  Score=105.51  Aligned_cols=83  Identities=22%  Similarity=0.336  Sum_probs=71.7

Q ss_pred             ceeeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcC
Q psy1156         575 TFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIK  654 (671)
Q Consensus       575 ~~~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg  654 (671)
                      ....+.+.+..  .+|||.+.+.       .|++|..|.++|||+++| |++||+|++|||++|.++++.+++.+|+..+
T Consensus        15 ~~~~v~l~~~~--~g~G~~~~~~-------~~~~V~~V~~~spA~~aG-L~~GD~I~~vng~~v~~~~~~~~~~~l~~~~   84 (100)
T 1whd_A           15 EKLQITIRRGK--DGFGFTICCD-------SPVRVQAVDSGGPAERAG-LQQLDTVLQLNERPVEHWKCVELAHEIRSCP   84 (100)
T ss_dssp             EEEEEEEECCS--SSSSCBCCCS-------SSCBCCBCCTTSHHHHHT-CCSSCEEEEETTEECTTCCHHHHHHHHHHCS
T ss_pred             ceEEEEEECCC--CeeeEEEeCC-------CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            44567777765  7899998764       378999999999999999 9999999999999999999999999999875


Q ss_pred             CCcEEEEEEeCCCC
Q psy1156         655 NGSISLHICRRLKS  668 (671)
Q Consensus       655 ~~~VtL~V~Rr~~~  668 (671)
                       +.|.|+|.|....
T Consensus        85 -~~v~l~v~R~~~~   97 (100)
T 1whd_A           85 -SEIILLVWRVSGP   97 (100)
T ss_dssp             -SEEEEEEEECCSS
T ss_pred             -CeEEEEEEECCCC
Confidence             6799999988654

>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=99.23  E-value=3.1e-11  Score=107.68  Aligned_cols=86  Identities=29%  Similarity=0.489  Sum_probs=75.9

Q ss_pred             CeEEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhcC
Q psy1156         387 GQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSG  466 (671)
Q Consensus       387 ~~~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~~  466 (671)
                      .++.|.|.+.  ..+|||.|.++.+      .|++|..|.+++||+++|+|++||+|++|||+.|.++++.+++.+++..
T Consensus        15 ~~~~v~l~~~--~~~lG~~l~~~~~------~g~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~   86 (111)
T 2dlu_A           15 HVEEVELIND--GSGLGFGIVGGKT------SGVVVRTIVPGGLADRDGRLQTGDHILKIGGTNVQGMTSEQVAQVLRNC   86 (111)
T ss_dssp             EEEEEEEECC--SSCCCEEEECCSS------SSBEEEEECTTSSHHHHTCCCSSCEEEEESSCCCTTSCHHHHHHHHHHH
T ss_pred             ceEEEEEEeC--CCccCEEEeccCC------CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence            4578888874  3789999997653      5899999999999999999999999999999999999999999999877


Q ss_pred             CCeEEEEEEeCCcc
Q psy1156         467 PLNMDLLISRTSLK  480 (671)
Q Consensus       467 g~~V~L~V~R~~~~  480 (671)
                      +..|.|+|.|.+..
T Consensus        87 g~~v~l~v~R~~~~  100 (111)
T 2dlu_A           87 GNSVRMLVARDPAG  100 (111)
T ss_dssp             CSEEEEEEEESCTT
T ss_pred             CCeEEEEEEeCCCC
Confidence            88999999997653

>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3; neuron-specific X11L2 protein, neuronal MUNC18-1-interacting protein 3, MINT-3; NMR {Homo sapiens}

Probab=99.23  E-value=6e-11  Score=104.45  Aligned_cols=91  Identities=24%  Similarity=0.455  Sum_probs=75.0

Q ss_pred             CCCeEEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHh
Q psy1156         385 QEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIIS  464 (671)
Q Consensus       385 ~~~~~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~  464 (671)
                      ...++.|+|.+.. +++|||+|.+.... . ...+++|..|.+++||+++|.|++||+|++|||+.+.+.++.+++.+|+
T Consensus         7 ~~~~~~v~l~k~~-g~~lG~~i~~~~~~-~-~~~~~~V~~V~~~spA~~~ggl~~GD~I~~Ing~~v~~~~~~~~~~~l~   83 (101)
T 2yt7_A            7 GDNCREVHLEKRR-GEGLGVALVESGWG-S-LLPTAVIANLLHGGPAERSGALSIGDRLTAINGTSLVGLPLAACQAAVR   83 (101)
T ss_dssp             TCCCEEEEEECCT-TCCCCEEEEECCCS-S-SSCCEEEEEECTTSTTGGGSSCCTTCEEEEESSCBCTTSCHHHHHHHHH
T ss_pred             CCceEEEEEEeCC-CCccCEEEEeCCCC-C-CccCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            5577899998754 57999999853211 0 1147999999999999996559999999999999999999999999998


Q ss_pred             c--CCCeEEEEEEeCC
Q psy1156         465 S--GPLNMDLLISRTS  478 (671)
Q Consensus       465 ~--~g~~V~L~V~R~~  478 (671)
                      .  .+..|.|+|.|..
T Consensus        84 ~~~~g~~v~l~v~R~~   99 (101)
T 2yt7_A           84 ETKSQTSVTLSIVHCP   99 (101)
T ss_dssp             HTTTSSEEEEEECCCC
T ss_pred             hCCCCCeEEEEEEeCC
Confidence            6  6789999998753

>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding, nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens} PDB: 3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A

Probab=99.23  E-value=4e-11  Score=112.22  Aligned_cols=92  Identities=26%  Similarity=0.378  Sum_probs=74.9

Q ss_pred             ceeeEEEeeCC--CCCcccEEEecCCCCC---------CCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCH
Q psy1156         575 TFHTIVFEKGP--GKKGLGFTIVGGKDSP---------RGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTH  643 (671)
Q Consensus       575 ~~~~V~L~K~~--g~~~LGfsL~Gg~ds~---------~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSh  643 (671)
                      ..+.|.|.+..  +..+|||.+.++.+..         ....|++|..|.++|||+++| |++||+|++|||++|.++++
T Consensus        23 ~~~~v~l~~~~~~~~~~lG~~i~~g~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG-L~~GD~I~~vng~~v~~~~~  101 (139)
T 2vz5_A           23 MVQRVEIHKLRQGENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAG-LQIGDKIMQVNGWDMTMVTH  101 (139)
T ss_dssp             EEEEEEEECEEETTEEECSEEEEECTTSCGGGCSSCSSTTCCCEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCH
T ss_pred             ceEEEEEEEcCCCCcccccEEEEccccCChhhhhhcccCCCCCEEEEEECCCCHHHHCC-CCCCCEEEEECCEEcCCCCH
Confidence            45677776643  1247999998876532         124699999999999999999 99999999999999999999


Q ss_pred             HHHHHHHHhcCCCcEEEEEEeCCC
Q psy1156         644 LEAISLFKTIKNGSISLHICRRLK  667 (671)
Q Consensus       644 eEAV~lLK~sg~~~VtL~V~Rr~~  667 (671)
                      .+++.+|+..+...|.|+|.|+..
T Consensus       102 ~~~~~~l~~~~g~~v~l~v~R~g~  125 (139)
T 2vz5_A          102 DQARKRLTKRSEEVVRLLVTRQSL  125 (139)
T ss_dssp             HHHHHHHCCTTCSEEEEEEEECC-
T ss_pred             HHHHHHHHhCCCCEEEEEEEECCE
Confidence            999999987544679999999865

>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.23  E-value=9e-11  Score=104.53  Aligned_cols=92  Identities=26%  Similarity=0.422  Sum_probs=77.7

Q ss_pred             CCCeEEEEEEeCCCCCcccEEEeeecCCCC--CCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHH
Q psy1156         385 QEGQTMVRVNRRDFNEELGIYIAKIKNSSE--GNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSI  462 (671)
Q Consensus       385 ~~~~~~V~L~k~~~~~~LGfsI~gg~~~~~--g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~  462 (671)
                      ....+.+.|.+.  ..+|||+|.++.+...  ....|++|..|.+++||+++| |++||+|++|||+.+.++.+.+++..
T Consensus        13 ~~~~~~~~l~~~--~~glG~~i~~g~~~~~~~~~~~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~   89 (110)
T 1x5q_A           13 EEEELTLTILRQ--TGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAG-VRVGDKLLEVNGVALQGAEHHEAVEA   89 (110)
T ss_dssp             CCEEEEEEEECS--SSSCSEEEEECTTSCCSSTTCCSEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHH
T ss_pred             CcceEEEEEecC--CCeeeEEEEccccCCccccCCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCcCHHHHHHH
Confidence            345567888775  4899999998765321  112789999999999999999 99999999999999999999999988


Q ss_pred             HhcCCCeEEEEEEeCCc
Q psy1156         463 ISSGPLNMDLLISRTSL  479 (671)
Q Consensus       463 L~~~g~~V~L~V~R~~~  479 (671)
                      ++..+..|.|+|.|++.
T Consensus        90 ~~~~g~~v~l~v~R~g~  106 (110)
T 1x5q_A           90 LRGAGTAVQMRVWRESG  106 (110)
T ss_dssp             HHSCCSEEEEEEEECSS
T ss_pred             hhCCCCeEEEEEEECCc
Confidence            88888999999999775

>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide; peptide binding protein; NMR {Drosophila melanogaster}

Probab=99.23  E-value=4.4e-11  Score=106.83  Aligned_cols=84  Identities=21%  Similarity=0.370  Sum_probs=74.1

Q ss_pred             eEEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhcCC
Q psy1156         388 QTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGP  467 (671)
Q Consensus       388 ~~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~~g  467 (671)
                      .+.|.|.+. ...+|||.+.+..       .|++|..|.+||||+++|+|++||+|++|||++|.++++.+++.+++..+
T Consensus         3 ~~~v~L~k~-~~~glG~~i~~~~-------~gv~V~~V~~gspA~~aG~L~~GD~Il~Ing~~v~~~~~~~~~~~~~~~~   74 (106)
T 2la8_A            3 KFNVDLMKK-AGKELGLSLSPNE-------IGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYALFKGAN   74 (106)
T ss_dssp             EEEEEECCB-SSSTTCCEEEECS-------SSEEEEECCTTSCHHHHTTCCTTCEEEEESSCBCSSSCHHHHHHHHHSCB
T ss_pred             EEEEEEEeC-CCCccCEEEEeCC-------CCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHhCCC
Confidence            467888764 4689999998722       68999999999999999999999999999999999999999999999888


Q ss_pred             CeEEEEEEeCCc
Q psy1156         468 LNMDLLISRTSL  479 (671)
Q Consensus       468 ~~V~L~V~R~~~  479 (671)
                      +.+.|+|.|...
T Consensus        75 ~~v~l~v~R~~~   86 (106)
T 2la8_A           75 GKVSMEVTRPKP   86 (106)
T ss_dssp             SCEEEEEEECCS
T ss_pred             CeEEEEEEeCCC
Confidence            899999999654

>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.23  E-value=5.5e-11  Score=106.82  Aligned_cols=94  Identities=24%  Similarity=0.374  Sum_probs=78.6

Q ss_pred             CCCeEEEEEEeCCCCCcccEEEeeecCCCCCC---cCcEEEEEEcCCChhhh-cCCCCCCCEEEccCCeeccCCCHHHHH
Q psy1156         385 QEGQTMVRVNRRDFNEELGIYIAKIKNSSEGN---IGGFVVAHIVSGGLAEK-EGCLELGDEIISVNGQRLRGLTMTQAK  460 (671)
Q Consensus       385 ~~~~~~V~L~k~~~~~~LGfsI~gg~~~~~g~---~~GI~Vs~V~pGspA~r-aG~L~~GD~IlaVNG~~V~~~s~~~av  460 (671)
                      ....+.|.|.+.. ..+|||+|.++.+.....   ..+++|..|.+++||++ +| |++||+|++|||+.+.++++.+++
T Consensus         8 ~~~~~~v~l~~~~-~~~lGf~l~~~~~~~~~g~~~~~~~~V~~V~~~spA~~~ag-L~~GD~I~~ing~~v~~~~~~~~~   85 (114)
T 1uew_A            8 SLQTSDVVIHRKE-NEGFGFVIISSLNRPESGSTITVPHKIGRIIDGSPADRCAK-LKVGDRILAVNGQSIINMPHADIV   85 (114)
T ss_dssp             CCCCEEEEEECCT-TSCCCEEEECCCCSCCSSCCSCCSCEEEEECTTCTTGGGSS-CCTTCBEEEETTBCTTTSCHHHHH
T ss_pred             cccceEEEEEECC-CCCCCEEEEeecccCCCCcccccCeEEEEECCCChHHHhCC-CCCCCEEEEECCEECCCCCHHHHH
Confidence            4466889998743 579999999876443211   12679999999999999 88 999999999999999999999999


Q ss_pred             HHHhcCCCeEEEEEEeCCcc
Q psy1156         461 SIISSGPLNMDLLISRTSLK  480 (671)
Q Consensus       461 ~~L~~~g~~V~L~V~R~~~~  480 (671)
                      .+|+..+..+.|+|.|.+..
T Consensus        86 ~~l~~~g~~v~l~v~r~~~~  105 (114)
T 1uew_A           86 KLIKDAGLSVTLRIIPQEEL  105 (114)
T ss_dssp             HHHHHTTTEEEEEECCCSCC
T ss_pred             HHHHcCCCeEEEEEEeCCcC
Confidence            99998889999999987653

>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.23  E-value=2.4e-11  Score=106.63  Aligned_cols=90  Identities=28%  Similarity=0.378  Sum_probs=76.5

Q ss_pred             CCCeEEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHh
Q psy1156         385 QEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIIS  464 (671)
Q Consensus       385 ~~~~~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~  464 (671)
                      ..+++.|.|.+.....+|||.+.++.+..    .|++|..|.+++||+++| |++||+|++|||+.+.++.+.+++..++
T Consensus         6 ~~~~~~v~l~~~~~~~~lG~~~~~~~~~~----~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~~~   80 (101)
T 1uez_A            6 SGEVRLVSLRRAKAHEGLGFSIRGGSEHG----VGIYVSLVEPGSLAEKEG-LRVGDQILRVNDKSLARVTHAEAVKALK   80 (101)
T ss_dssp             SCCCEEECCCCCCTTTCSSEEEEECTTTT----CCEEEEEECTTSHHHHHT-CCSSCCEEEETTEECSSCCHHHHHHHSS
T ss_pred             CCccEEEEEEECCCCCcccEEEeCCCCCC----CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCcCHHHHHHhhc
Confidence            45778898887556789999999876543    689999999999999999 9999999999999999999988777776


Q ss_pred             cCCCeEEEEEEeCCcc
Q psy1156         465 SGPLNMDLLISRTSLK  480 (671)
Q Consensus       465 ~~g~~V~L~V~R~~~~  480 (671)
                      . +..+.|+|.|.+..
T Consensus        81 ~-~~~v~l~v~R~g~~   95 (101)
T 1uez_A           81 G-SKKLVLSVYSAGRI   95 (101)
T ss_dssp             S-SSSCCEEECCCCCC
T ss_pred             C-CCeEEEEEEECCcc
Confidence            4 56789999887653

>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled coil, deafness, hearing, non-syndromic deafness, polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A 2lsr_A

Probab=99.22  E-value=2.5e-11  Score=118.95  Aligned_cols=86  Identities=31%  Similarity=0.539  Sum_probs=75.6

Q ss_pred             ceeeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcC
Q psy1156         575 TFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIK  654 (671)
Q Consensus       575 ~~~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg  654 (671)
                      ..+.|.|.+.. ..+|||++.++.+..   .|++|..|.++|||+++| |++||+|++|||.+|.++++.+++.+|+. +
T Consensus        84 ~~~~v~l~k~~-~~~lG~~i~~~~~~~---~~~~V~~V~~gspA~~aG-L~~GD~Il~vng~~v~~~~~~~~~~~l~~-~  157 (192)
T 3k1r_A           84 KLKEVRLDRLH-PEGLGLSVRGGLEFG---CGLFISHLIKGGQADSVG-LQVGDEIVRINGYSISSCTHEEVINLIRT-E  157 (192)
T ss_dssp             SCEEEEEETTS-TTCCCEEEEEEGGGT---EEEEEEEECTTSHHHHTT-CCTTEEEEEETTEECTTCCHHHHHHHHTS-S
T ss_pred             ceEEEEEEeCC-CCceeEEEEcccccC---CCEEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHcC-C
Confidence            45689999885 379999999875432   589999999999999999 99999999999999999999999999988 4


Q ss_pred             CCcEEEEEEeCCC
Q psy1156         655 NGSISLHICRRLK  667 (671)
Q Consensus       655 ~~~VtL~V~Rr~~  667 (671)
                       ..|.|+|.|..+
T Consensus       158 -~~v~l~v~r~g~  169 (192)
T 3k1r_A          158 -KTVSIKVRHIGL  169 (192)
T ss_dssp             -SEEEEEEEECCE
T ss_pred             -CeEEEEEEECCc
Confidence             789999998753

>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A 3qjm_A 3qjn_A 3o5n_A*

Probab=99.22  E-value=7.8e-11  Score=104.88  Aligned_cols=89  Identities=21%  Similarity=0.293  Sum_probs=74.7

Q ss_pred             eEEEEEEeCCCCCcccEEEeeecCCCCC--------CcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHH
Q psy1156         388 QTMVRVNRRDFNEELGIYIAKIKNSSEG--------NIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQA  459 (671)
Q Consensus       388 ~~~V~L~k~~~~~~LGfsI~gg~~~~~g--------~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~a  459 (671)
                      .+.|.|.+. ..++|||+|.++......        ...|++|..|.+++||+++| |++||+|++|||+.|.++++.++
T Consensus         8 ~~~v~l~~~-~~~g~G~~l~~~~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG-l~~GD~I~~vng~~v~~~~~~~~   85 (109)
T 1q3o_A            8 EKTVLLQKK-DSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAG-LRMGDFLIEVNGQNVVKVGHRQV   85 (109)
T ss_dssp             EEEEEEECC-TTSCCSEEEEESSCCCTTSCCCCCSSCCSSEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHH
T ss_pred             cEEEEEEEC-CCCCCcEEEEeccCCCCcccccccccCCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHH
Confidence            467888864 368999999987653100        01389999999999999999 99999999999999999999999


Q ss_pred             HHHHhcCCCeEEEEEEeCC
Q psy1156         460 KSIISSGPLNMDLLISRTS  478 (671)
Q Consensus       460 v~~L~~~g~~V~L~V~R~~  478 (671)
                      +.+++..+..+.|+|.|..
T Consensus        86 ~~~l~~~~~~v~l~v~~~~  104 (109)
T 1q3o_A           86 VNMIRQGGNTLMVKVVMVT  104 (109)
T ss_dssp             HHHHHHTTTEEEEEEEEEE
T ss_pred             HHHHHhCCCEEEEEEEECC
Confidence            9999877889999998754

>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=99.22  E-value=5.4e-11  Score=109.04  Aligned_cols=95  Identities=21%  Similarity=0.371  Sum_probs=80.2

Q ss_pred             CCCeEEEEEEeCCCCCcccEEEeeecCCCC-CCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHH
Q psy1156         385 QEGQTMVRVNRRDFNEELGIYIAKIKNSSE-GNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSII  463 (671)
Q Consensus       385 ~~~~~~V~L~k~~~~~~LGfsI~gg~~~~~-g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L  463 (671)
                      +...+.|.|.+. ...+|||++.++.+... +...|++|..|.++|||+++|.|++||+|++|||+.+.++++.+++.+|
T Consensus        13 ~~~~~~v~l~~~-~~~~lG~~i~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~l   91 (129)
T 2dmz_A           13 LFETYNVELVRK-DGQSLGIRIVGYVGTSHTGEASGIYVKSVIPGSAAYHNGHIQVNDKIVAVDGVNIQGFANHDVVEVL   91 (129)
T ss_dssp             CEEEEEEEECCC-TTCCCCEEEEEECCCSSSCCCCEEEEEEECTTSHHHHHTCCCSSCBEEEETTBCCTTCCHHHHHHHH
T ss_pred             CCcEEEEEEEeC-CCCCcCEEEEeecCCcccCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence            445677888663 36899999998765332 1126899999999999999999999999999999999999999999999


Q ss_pred             hcCCCeEEEEEEeCCcc
Q psy1156         464 SSGPLNMDLLISRTSLK  480 (671)
Q Consensus       464 ~~~g~~V~L~V~R~~~~  480 (671)
                      +..+..|.|+|.|.+..
T Consensus        92 ~~~~~~v~l~v~R~~~~  108 (129)
T 2dmz_A           92 RNAGQVVHLTLVRRKTS  108 (129)
T ss_dssp             HHCCSSEEEEEEEESSS
T ss_pred             HcCCCeEEEEEEeCCcc
Confidence            98888999999997653

>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.22  E-value=7.1e-11  Score=103.54  Aligned_cols=89  Identities=27%  Similarity=0.407  Sum_probs=76.1

Q ss_pred             CCCeEEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHh
Q psy1156         385 QEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIIS  464 (671)
Q Consensus       385 ~~~~~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~  464 (671)
                      ...++.|+|.+.. .+.|||.+.+.....    .|++|..|.+++||+++| |++||+|++|||+.+.++++.+++..++
T Consensus         8 ~~~~~~v~l~~~~-~~~lG~~~~~~~~~~----~gv~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~~~   81 (100)
T 2eeh_A            8 SDIIHSVRVEKSP-AGRLGFSVRGGSEHG----LGIFVSKVEEGSSAERAG-LCVGDKITEVNGLSLESTTMGSAVKVLT   81 (100)
T ss_dssp             CCEECCEEECCCS-SSSCSEEEECCTTTT----CCEEEEEECTTSHHHHHT-CCSSCEEEEETTEECSSCCHHHHHHHHH
T ss_pred             CCeEEEEEEEECC-CCCccEEEEccccCC----CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHhhc
Confidence            3456778888753 467999999865432    689999999999999999 9999999999999999999999999998


Q ss_pred             cCCCeEEEEEEeCCcc
Q psy1156         465 SGPLNMDLLISRTSLK  480 (671)
Q Consensus       465 ~~g~~V~L~V~R~~~~  480 (671)
                      . +..+.|+|.|.+..
T Consensus        82 ~-~~~v~l~v~R~g~~   96 (100)
T 2eeh_A           82 S-SSRLHMMVRRMGSG   96 (100)
T ss_dssp             S-CSSEEEEEEECSCC
T ss_pred             C-CCEEEEEEEECCcC
Confidence            6 78999999998763

>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding protein, membrane, sensory transduction, vision; 1.55A {Drosophila melanogaster} PDB: 2qkt_A 2qku_A

Probab=99.22  E-value=6e-11  Score=103.50  Aligned_cols=86  Identities=21%  Similarity=0.360  Sum_probs=74.8

Q ss_pred             CCCeEEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHh
Q psy1156         385 QEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIIS  464 (671)
Q Consensus       385 ~~~~~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~  464 (671)
                      +-..+.|.|.+. ...+|||.+.+..       .|++|..|.++|||+++|+|++||+|++|||+.+.++++.+++.+++
T Consensus         6 ~~~~~~v~l~~~-~~~glG~~~~~~~-------~gv~V~~V~~~spA~~aG~L~~GD~I~~Ing~~v~~~~~~~~~~~~~   77 (96)
T 2qkv_A            6 SLEKFNVDLMKK-AGKELGLSLSPNE-------IGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVSYALFK   77 (96)
T ss_dssp             CCCCEEEEEECB-TTBCCCEEEEECS-------SSEEEEEECTTSCHHHHHHCCTTCEEEEETTEECTTCCHHHHHHHHH
T ss_pred             HCceEEEEEEeC-CCCCccEEEEeCC-------CcEEEEEeCCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHh
Confidence            345678888764 3578999988621       68999999999999999999999999999999999999999999999


Q ss_pred             cCCCeEEEEEEeCC
Q psy1156         465 SGPLNMDLLISRTS  478 (671)
Q Consensus       465 ~~g~~V~L~V~R~~  478 (671)
                      ..++.+.|+|.|..
T Consensus        78 ~~~~~v~l~v~R~~   91 (96)
T 2qkv_A           78 GANGKVSMEVTRPK   91 (96)
T ss_dssp             TCSSEEEEEEECCC
T ss_pred             cCCCcEEEEEEeCC
Confidence            88889999998853

>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex, peptide binding protein; 1.54A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A

Probab=99.22  E-value=7.5e-11  Score=106.48  Aligned_cols=89  Identities=25%  Similarity=0.386  Sum_probs=78.4

Q ss_pred             CCCCeEEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHH
Q psy1156         384 SQEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSII  463 (671)
Q Consensus       384 ~~~~~~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L  463 (671)
                      .....+.|.|.+..  .+|||++.++.+.     .|++|..|.++|||+++|.|++||+|++|||+.+.++++.+++.++
T Consensus        11 ~~~~~~~v~l~k~~--~glG~~l~~~~~~-----~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~   83 (119)
T 1tp5_A           11 IPREPRRIVIHRGS--TGLGFNIVGGEDG-----EGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIAL   83 (119)
T ss_dssp             CCCSCEEEEEECTT--SCCCEEEEECGGG-----CCEEEEEECTTSHHHHHSCCCTTEEEEEETTEECTTCCHHHHHHHH
T ss_pred             CCCccEEEEEEECC--CCccEEEecCCCC-----CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence            35577899998854  6799999987642     6899999999999999999999999999999999999999999999


Q ss_pred             hcCCCeEEEEEEeCCc
Q psy1156         464 SSGPLNMDLLISRTSL  479 (671)
Q Consensus       464 ~~~g~~V~L~V~R~~~  479 (671)
                      +..+..+.|+|.|...
T Consensus        84 ~~~~~~v~l~v~r~~~   99 (119)
T 1tp5_A           84 KNAGQTVTIIAQYKPE   99 (119)
T ss_dssp             HTSCSEEEEEEEECHH
T ss_pred             HcCCCeEEEEEEECCc
Confidence            8888899999998654

>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics, KIAA0705 protein; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.21  E-value=9.5e-11  Score=102.55  Aligned_cols=83  Identities=36%  Similarity=0.512  Sum_probs=70.3

Q ss_pred             ceeeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcC
Q psy1156         575 TFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIK  654 (671)
Q Consensus       575 ~~~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg  654 (671)
                      +.+.|.|.+..  .+|||.|.+..      .|++|..|.++  |+++| |++||+|++|||++|.+++|.+++++|+..+
T Consensus        10 ~~~~v~l~~~~--~g~G~~i~~~~------~Gv~V~~v~~~--a~~aG-L~~GD~I~~vng~~v~~~~~~~~~~~l~~~~   78 (96)
T 1ujv_A           10 ELMTLTIVKGA--QGFGFTIADSP------TGQRVKQILDI--QGCPG-LCEGDLIVEINQQNVQNLSHTEVVDILKDCP   78 (96)
T ss_dssp             CCEEEEEECCS--SSSSEEEEEET------TEEEEEEESCG--GGSTT-CCSSCEEEEETTEECSSCCHHHHHHHHHHSC
T ss_pred             eEEEEEEEeCC--CceeEEEEcCC------CCEEEEEEecc--cccCC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            45678888876  89999997532      37999999983  67788 9999999999999999999999999999864


Q ss_pred             -CCcEEEEEEeCCCC
Q psy1156         655 -NGSISLHICRRLKS  668 (671)
Q Consensus       655 -~~~VtL~V~Rr~~~  668 (671)
                       ...|.|+|.|....
T Consensus        79 ~g~~v~l~v~R~g~~   93 (96)
T 1ujv_A           79 IGSETSLIIHRGSGP   93 (96)
T ss_dssp             TTSEEEEEEECCSSC
T ss_pred             CCCEEEEEEEECCCC
Confidence             47899999997653

>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs large homolog 2, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.21  E-value=2.6e-11  Score=105.01  Aligned_cols=85  Identities=27%  Similarity=0.425  Sum_probs=73.8

Q ss_pred             CCCeEEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHh
Q psy1156         385 QEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIIS  464 (671)
Q Consensus       385 ~~~~~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~  464 (671)
                      +..++.|+|.|. ..++|||++.+..       .+++|..|.+++||+++|.|++||+|++|||+.+ +.++.++..+|+
T Consensus         4 ~~~~r~v~l~k~-~~~~lG~~i~~~~-------~~v~V~~V~~~spA~~ag~L~~GD~I~~ing~~v-~~~~~~~~~~l~   74 (91)
T 2e7k_A            4 GSSGRMVGIRKT-AGEHLGVTFRVEG-------GELVIARILHGGMVAQQGLLHVGDIIKEVNGQPV-GSDPRALQELLR   74 (91)
T ss_dssp             CCCSCBCCBCCC-TTCCCCEEEEESS-------SSEEEEEECSSSHHHHHCCCCTTCEEEEETTEEC-TTCHHHHHHHHH
T ss_pred             CCCcEEEEEEEC-CCCcEeEEEEecC-------CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEEC-CCCHHHHHHHHH
Confidence            345678888774 4689999999732       6899999999999999888999999999999999 999999999999


Q ss_pred             cCCCeEEEEEEeCC
Q psy1156         465 SGPLNMDLLISRTS  478 (671)
Q Consensus       465 ~~g~~V~L~V~R~~  478 (671)
                      ..+..+.|+|.|..
T Consensus        75 ~~~~~v~l~v~~~~   88 (91)
T 2e7k_A           75 NASGSVILKILSGP   88 (91)
T ss_dssp             TCCSSBCEEEECCS
T ss_pred             cCCCeEEEEEEECC
Confidence            87888999998743

>2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ domain, protein, acetylation, cell projection, disease mutation, membrane; NMR {Homo sapiens}

Probab=99.21  E-value=4.8e-11  Score=108.97  Aligned_cols=85  Identities=26%  Similarity=0.418  Sum_probs=72.9

Q ss_pred             ceeeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcC
Q psy1156         575 TFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIK  654 (671)
Q Consensus       575 ~~~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg  654 (671)
                      ..+.|+|.+..  .+|||.+.++.+.    .|++|..|.++|||+++| |++||+|++|||++|.++++.+++.+|+..+
T Consensus         9 ~~r~v~l~~~~--~g~G~~l~~~~~~----~gv~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~   81 (128)
T 2kjd_A            9 RPRLCTMKKGP--SGYGFNLHSDKSK----PGQFIRSVDPDSPAEASG-LRAQDRIVEVNGVCMEGKQHGDVVSAIRAGG   81 (128)
T ss_dssp             CCEEEEEECCS--SSCCEEEEECSSS----CSEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHTTC
T ss_pred             CcEEEEEecCC--CcccEEEEecCCC----CCEEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence            34578888886  7899999887643    389999999999999999 9999999999999999889999999999875


Q ss_pred             CCcEEEEEEeCC
Q psy1156         655 NGSISLHICRRL  666 (671)
Q Consensus       655 ~~~VtL~V~Rr~  666 (671)
                      ...+.|+|.|+.
T Consensus        82 ~~~~~l~v~R~g   93 (128)
T 2kjd_A           82 DETKLLVVDRET   93 (128)
T ss_dssp             SEEEEEEECHHH
T ss_pred             CCEEEEEEEeCC
Confidence            445778887753

>2edp_A Fragment, shroom family member 4; APX/shroom family member, KIAA1202 protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.21  E-value=2.3e-11  Score=106.95  Aligned_cols=86  Identities=28%  Similarity=0.372  Sum_probs=71.1

Q ss_pred             eeeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcCC
Q psy1156         576 FHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKN  655 (671)
Q Consensus       576 ~~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg~  655 (671)
                      ...+.+.+.. ..+|||.+.++.+..   .|++|..|.++|||+++|.|++||+|++|||++|.++ +.+++.+++..+ 
T Consensus        10 ~~~~~v~~~~-~~~~G~~~~gg~~~~---~~v~V~~V~~~spA~~agGL~~GD~I~~ing~~v~~~-~~~~~~~~~~~~-   83 (100)
T 2edp_A           10 FQYVPVQLQG-GAPWGFTLKGGLEHC---EPLTVSKIEDGGKAALSQKMRTGDELVNINGTPLYGS-RQEALILIKGSF-   83 (100)
T ss_dssp             CEEEEEECCS-CSCCCCCEEEEGGGT---EEEEECCCCTTSHHHHHTSCCTTCEEEEETTEECCSC-SHHHHHHHHTCC-
T ss_pred             cEEEEEEECC-CCCcCEEEeccCCCC---CCeEEEEECCCCHHHHcCCCCCCCEEEEECCEEccch-HHHHHHHHHhCC-
Confidence            3455665543 368999999876543   4799999999999999933999999999999999886 899999999874 


Q ss_pred             CcEEEEEEeCCC
Q psy1156         656 GSISLHICRRLK  667 (671)
Q Consensus       656 ~~VtL~V~Rr~~  667 (671)
                      ..|.|+|.|+..
T Consensus        84 ~~v~l~v~R~~~   95 (100)
T 2edp_A           84 RILKLIVRRRNS   95 (100)
T ss_dssp             SSCEEEEEECCC
T ss_pred             CeEEEEEEeCCC
Confidence            789999999764

>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.20  E-value=6.2e-11  Score=106.82  Aligned_cols=86  Identities=23%  Similarity=0.349  Sum_probs=73.6

Q ss_pred             ceeeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcC
Q psy1156         575 TFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIK  654 (671)
Q Consensus       575 ~~~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg  654 (671)
                      ..+.|.+.+..  .+|||.+.++.+     .|++|..|.++|||+++| |++||+|++|||++|.++++.+++.+++.. 
T Consensus        19 ~~~~v~l~~~~--~~lG~~~~~~~~-----~gv~V~~V~~~spA~~aG-L~~GD~Il~vng~~v~~~~~~~~~~~~~~~-   89 (117)
T 1uit_A           19 EPRHVKVQKGS--EPLGISIVSGEK-----GGIYVSKVTVGSIAHQAG-LEYGDQLLEFNGINLRSATEQQARLIIGQQ-   89 (117)
T ss_dssp             CCEEEEEECSS--CCCCEEEEECTT-----SCEEEEEECTTSHHHHHT-CCTTCEECEETTEETTTCCHHHHHHHTTSC-
T ss_pred             CCEEEEEEeCC--CCccEEEEccCC-----CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcC-
Confidence            44588888875  799999987754     389999999999999999 999999999999999999999988777655 


Q ss_pred             CCcEEEEEEeCCCCC
Q psy1156         655 NGSISLHICRRLKSK  669 (671)
Q Consensus       655 ~~~VtL~V~Rr~~~~  669 (671)
                      ...|.|+|.|+....
T Consensus        90 g~~v~l~v~r~~~~~  104 (117)
T 1uit_A           90 CDTITILAQYNPHVH  104 (117)
T ss_dssp             CSEEEEEECCCSCCC
T ss_pred             CCeEEEEEEECCchh
Confidence            478999999876543

>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high affinity ligand, cell adhesio; 1.60A {Homo sapiens} PDB: 2h2c_A 2h3m_A 2rrm_A

Probab=99.20  E-value=9.1e-11  Score=103.84  Aligned_cols=92  Identities=23%  Similarity=0.287  Sum_probs=77.4

Q ss_pred             CCCeEEEEEEeCCCCCcccEEEeeecCCCC---CCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHH
Q psy1156         385 QEGQTMVRVNRRDFNEELGIYIAKIKNSSE---GNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKS  461 (671)
Q Consensus       385 ~~~~~~V~L~k~~~~~~LGfsI~gg~~~~~---g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~  461 (671)
                      ..+.+.|+|.|. +..+|||+|.++.+.+.   +. .|++|..|.++|||+ +| |++||+|++|||+.+.++++..++.
T Consensus         5 ~~~~~~v~l~k~-~~~glG~~i~~~~~~~~~~~~~-~gv~V~~V~~~spA~-ag-l~~GD~I~~vng~~v~~~~~~~~~~   80 (107)
T 2h2b_A            5 IWEQHTVTLHRA-PGFGFGIAISGGRDNPHFQSGE-TSIVISDVLKGGPAE-GQ-LQENDRVAMVNGVSMDNVEHAFAVQ   80 (107)
T ss_dssp             CEEEEEEEEECB-TTTBTCEEEEECTTSCCTTTCC-CCEEEEEECTTSTTB-TT-BCTTCEEEEETTEECTTCCHHHHHH
T ss_pred             cceeEEEEEEeC-CCCccCEEEecCcCCCcccCCC-CCEEEEEECCCCchh-hC-CCCCCEEEEECCEECCCccHHHHHH
Confidence            345688999885 46899999998765321   12 689999999999999 88 9999999999999999999998888


Q ss_pred             HHhcCCCeEEEEEEeCCcc
Q psy1156         462 IISSGPLNMDLLISRTSLK  480 (671)
Q Consensus       462 ~L~~~g~~V~L~V~R~~~~  480 (671)
                      .+...+..+.|+|.|.+..
T Consensus        81 ~~~~~g~~v~l~v~R~~~~   99 (107)
T 2h2b_A           81 QLRKSGKNAKITIRRKKGG   99 (107)
T ss_dssp             HHHTCCSEEEEEEEEESCC
T ss_pred             HhhCCCCEEEEEEEECCCC
Confidence            8887889999999987653

>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.20  E-value=1e-10  Score=105.42  Aligned_cols=86  Identities=31%  Similarity=0.480  Sum_probs=75.2

Q ss_pred             CeEEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhcC
Q psy1156         387 GQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSG  466 (671)
Q Consensus       387 ~~~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~~  466 (671)
                      +++.|.|.+..  .+|||.+.++.+      .|++|..|.+++||+++| |++||+|++|||+.|.++++.+++..+...
T Consensus        19 ~~~~v~l~~~~--~~lG~~~~~~~~------~gv~V~~V~~~spA~~aG-L~~GD~Il~vng~~v~~~~~~~~~~~~~~~   89 (117)
T 1uit_A           19 EPRHVKVQKGS--EPLGISIVSGEK------GGIYVSKVTVGSIAHQAG-LEYGDQLLEFNGINLRSATEQQARLIIGQQ   89 (117)
T ss_dssp             CCEEEEEECSS--CCCCEEEEECTT------SCEEEEEECTTSHHHHHT-CCTTCEECEETTEETTTCCHHHHHHHTTSC
T ss_pred             CCEEEEEEeCC--CCccEEEEccCC------CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence            34499998854  899999987653      689999999999999999 999999999999999999999888777778


Q ss_pred             CCeEEEEEEeCCccc
Q psy1156         467 PLNMDLLISRTSLKK  481 (671)
Q Consensus       467 g~~V~L~V~R~~~~~  481 (671)
                      +..+.|+|.|.+...
T Consensus        90 g~~v~l~v~r~~~~~  104 (117)
T 1uit_A           90 CDTITILAQYNPHVH  104 (117)
T ss_dssp             CSEEEEEECCCSCCC
T ss_pred             CCeEEEEEEECCchh
Confidence            899999999977643

>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.20  E-value=5e-11  Score=103.38  Aligned_cols=85  Identities=19%  Similarity=0.200  Sum_probs=73.6

Q ss_pred             CeEEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhcC
Q psy1156         387 GQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSG  466 (671)
Q Consensus       387 ~~~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~~  466 (671)
                      ..+.|+|.+   ..+|||.+.++.+..    .+++|..|.+++||+++| |++||+|++|||+.+.++++.++..+++..
T Consensus         8 ~~~~v~l~~---~~~~G~~l~gg~~~~----~~v~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~~~~~   79 (94)
T 2eeg_A            8 MPHSVTLRG---PSPWGFRLVGGRDFS----APLTISRVHAGSKAALAA-LCPGDLIQAINGESTELMTHLEAQNRIKGC   79 (94)
T ss_dssp             CCEEEEECC---SSCCSCCEECCTTTT----SCCEECCCCSSSHHHHTT-CCTTCEEEEETTEETTTCCHHHHHHHHHTC
T ss_pred             ceEEEEEeC---CCccCEEEECccCCC----CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence            346777733   368999999887643    689999999999999999 999999999999999999999999999877


Q ss_pred             CCeEEEEEEeCCc
Q psy1156         467 PLNMDLLISRTSL  479 (671)
Q Consensus       467 g~~V~L~V~R~~~  479 (671)
                      +..+.|+|.|.+.
T Consensus        80 g~~v~l~v~R~g~   92 (94)
T 2eeg_A           80 HDHLTLSVSSGPS   92 (94)
T ss_dssp             CSCEEEEEECCSS
T ss_pred             CCeEEEEEEeCCC
Confidence            8889999998754

>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1; copper chaperone for superoxide dismutase, neuronal adaptor, protein transport; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.20  E-value=1.2e-10  Score=101.15  Aligned_cols=79  Identities=24%  Similarity=0.450  Sum_probs=67.8

Q ss_pred             ceeeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcC
Q psy1156         575 TFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIK  654 (671)
Q Consensus       575 ~~~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg  654 (671)
                      ....+++.+.....+|||.+.+         | +|..|.++|||+++| |++||+|++|||++|.++++.+++.+|+..+
T Consensus        11 ~~~~~~i~~~~~~~~lG~~~~~---------G-~V~~V~~~spA~~aG-L~~GD~Il~Ing~~v~~~~~~~~~~~l~~~g   79 (90)
T 1y7n_A           11 NVTTVLIRRPDLRYQLGFSVQN---------G-IICSLMRGGIAERGG-VRVGHRIIEINGQSVVATPHEKIVHILSNAV   79 (90)
T ss_dssp             SCEEEEEEESSTTSCCCEEEET---------T-EEEEECTTSHHHHHT-CCSSCEEEEETTEECTTSCHHHHHHHHHHCC
T ss_pred             CcceEEEEeCCCccccCeEecC---------C-EEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            3456677676666889999853         3 899999999999999 9999999999999999999999999999874


Q ss_pred             CCcEEEEEEeC
Q psy1156         655 NGSISLHICRR  665 (671)
Q Consensus       655 ~~~VtL~V~Rr  665 (671)
                       ..|.|+|.+.
T Consensus        80 -~~v~l~v~p~   89 (90)
T 1y7n_A           80 -GEIHMKTMPA   89 (90)
T ss_dssp             -EEEEEEEECC
T ss_pred             -CeEEEEEEEC
Confidence             7899998754

>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70 kDa, Na/PI cotransporter C- terminal-associated protein, NAPI-CAP1; NMR {Mus musculus}

Probab=99.20  E-value=5.1e-11  Score=107.03  Aligned_cols=84  Identities=25%  Similarity=0.362  Sum_probs=72.6

Q ss_pred             eeeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcCC
Q psy1156         576 FHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKN  655 (671)
Q Consensus       576 ~~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg~  655 (671)
                      .+.+.|.+.. ...|||.+..+.+.    .|++|..|.++|||+++| |++||+|++|||++|.++++.+++.+|+..+ 
T Consensus        14 p~~~~l~~~~-~~~~G~~l~~~~~~----~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~l~~~g-   86 (114)
T 2edz_A           14 PRECKLSKQE-GQNYGFFLRIEKDT----DGHLIRVIEEGSPAEKAG-LLDGDRVLRINGVFVDKEEHAQVVELVRKSG-   86 (114)
T ss_dssp             CEEEEEECCT-TCCCSCEEECCTTC----CSCEEECCCTTCTTGGGT-CCTTCEEEEESSSBCSSSCHHHHHHHHHHTC-
T ss_pred             CEEEEEeCCC-CCcccEEEEEecCC----CCeEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCC-
Confidence            3577777764 47899999876443    489999999999999999 9999999999999999999999999998864 


Q ss_pred             CcEEEEEEeCC
Q psy1156         656 GSISLHICRRL  666 (671)
Q Consensus       656 ~~VtL~V~Rr~  666 (671)
                      ..|.|+|.|+.
T Consensus        87 ~~v~l~v~R~~   97 (114)
T 2edz_A           87 NSVTLLVLDGD   97 (114)
T ss_dssp             SEEEEEEECHH
T ss_pred             CEEEEEEEECC
Confidence            78999998864

>4fln_A Protease DO-like 2, chloroplastic; protease, DEG, PDZ, hydrolase; 2.80A {Arabidopsis thaliana}

Probab=99.20  E-value=6.7e-11  Score=133.20  Aligned_cols=55  Identities=13%  Similarity=0.135  Sum_probs=49.4

Q ss_pred             cceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcCCCcEEEEE
Q psy1156         605 IGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKNGSISLHI  662 (671)
Q Consensus       605 ~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg~~~VtL~V  662 (671)
                      .||+|..|.++++|+..| +++||+|++|||++|.  +..+..++|++++.+.+.|.+
T Consensus       415 ~gVvvs~V~~~s~a~~~g-~~~gdiI~~vNg~~V~--s~~~l~~~l~~~k~~~l~~~~  469 (539)
T 4fln_A          415 QIVILSQVLANEVNIGYE-DMNNQQVLKFNGIPIR--NIHHLAHLIDMCKDKYLVFEF  469 (539)
T ss_dssp             CCEEEEEECCCGGGTTCS-SCCSEEEEEETTEECC--SHHHHHHHHHTCCSSEEEEEE
T ss_pred             eEEEEEEecCCchhhhcC-CCCCCEEEeECCEEcC--CHHHHHHHHHHcCCCeEEEEE
Confidence            589999999999999999 9999999999999999  789999999998755566654

>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.20  E-value=2.4e-11  Score=106.10  Aligned_cols=82  Identities=24%  Similarity=0.415  Sum_probs=71.5

Q ss_pred             ceeeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcC
Q psy1156         575 TFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIK  654 (671)
Q Consensus       575 ~~~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg  654 (671)
                      ..++|+|.+.....+|||.+.+.       .|++|..|.++|||+ +| |++||+|++|||++|.++++.+++.+++..+
T Consensus         8 ~~~~v~l~~~~~~~~~G~~l~~~-------~~~~V~~V~~~spA~-ag-L~~GD~Il~ing~~v~~~~~~~~~~~~~~~g   78 (96)
T 2edv_A            8 VRHTVKIDKDTLLQDYGFHISES-------LPLTVVAVTAGGSAH-GK-LFPGDQILQMNNEPAEDLSWERAVDILREAE   78 (96)
T ss_dssp             EEEEEEECCCSSSCSCSBCCCSS-------SSCBCCCBCSSSSST-TT-SCTTCBEEEESSCBSTTCCHHHHHHHHHHCS
T ss_pred             ccEEEEEEECCCCCcccEEEecC-------CCeEEEEECCCCchh-hC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            34678898886545899999762       479999999999995 77 9999999999999999999999999999864


Q ss_pred             CCcEEEEEEeCC
Q psy1156         655 NGSISLHICRRL  666 (671)
Q Consensus       655 ~~~VtL~V~Rr~  666 (671)
                       ..|.|+|.|..
T Consensus        79 -~~v~l~v~R~~   89 (96)
T 2edv_A           79 -DSLSITVVRCT   89 (96)
T ss_dssp             -SCEEEEEEECC
T ss_pred             -CeEEEEEEECC
Confidence             78999999987

>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1 interacting protein 1, activin receptor interacting protein 1; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.19  E-value=2.1e-11  Score=106.91  Aligned_cols=88  Identities=25%  Similarity=0.374  Sum_probs=76.3

Q ss_pred             CCeEEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhc
Q psy1156         386 EGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISS  465 (671)
Q Consensus       386 ~~~~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~  465 (671)
                      ...+.|.|.+..  .+|||.+.++.+..    .|++|..|.+++||+++|.|++||+|++|||+.+.++++.+++.+++.
T Consensus        10 ~~~~~v~l~~~~--~g~G~~~~~~~~~~----~~~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~   83 (103)
T 1wfv_A           10 FDYFTVDMEKGA--KGFGFSIRGGREYK----MDLYVLRLAEDGPAIRNGRMRVGDQIIEINGESTRDMTHARAIELIKS   83 (103)
T ss_dssp             SCCEECCEECCT--TSSSBCCEEETTTT----EEEECCCBCTTSHHHHHCSSCTTCEEEEETTEECSSCCHHHHHHHHHH
T ss_pred             ceEEEEEEecCC--CcCCEEEeccccCC----CCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc
Confidence            345677777643  67999999876543    589999999999999999999999999999999999999999999987


Q ss_pred             CCCeEEEEEEeCCc
Q psy1156         466 GPLNMDLLISRTSL  479 (671)
Q Consensus       466 ~g~~V~L~V~R~~~  479 (671)
                      .+..+.|+|.|.+.
T Consensus        84 ~g~~v~l~v~R~~~   97 (103)
T 1wfv_A           84 GGRRVRLLLKRGTG   97 (103)
T ss_dssp             HCSEECEEEECTTC
T ss_pred             CCCeEEEEEEECCC
Confidence            78899999998765

>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled coil, deafness, hearing, non-syndromic deafness, polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A 2lsr_A

Probab=99.19  E-value=7.6e-11  Score=115.52  Aligned_cols=89  Identities=25%  Similarity=0.451  Sum_probs=79.5

Q ss_pred             CCCeEEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHh
Q psy1156         385 QEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIIS  464 (671)
Q Consensus       385 ~~~~~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~  464 (671)
                      ...++.|.|.+.. .++|||++.++....    .|++|..|.+||||+++| |++||+|++|||..|.++++.+++.+++
T Consensus        82 ~~~~~~v~l~k~~-~~~lG~~i~~~~~~~----~~~~V~~V~~gspA~~aG-L~~GD~Il~vng~~v~~~~~~~~~~~l~  155 (192)
T 3k1r_A           82 SRKLKEVRLDRLH-PEGLGLSVRGGLEFG----CGLFISHLIKGGQADSVG-LQVGDEIVRINGYSISSCTHEEVINLIR  155 (192)
T ss_dssp             CSSCEEEEEETTS-TTCCCEEEEEEGGGT----EEEEEEEECTTSHHHHTT-CCTTEEEEEETTEECTTCCHHHHHHHHT
T ss_pred             CCceEEEEEEeCC-CCceeEEEEcccccC----CCEEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHc
Confidence            4567899998863 579999999886543    689999999999999999 9999999999999999999999999999


Q ss_pred             cCCCeEEEEEEeCCcc
Q psy1156         465 SGPLNMDLLISRTSLK  480 (671)
Q Consensus       465 ~~g~~V~L~V~R~~~~  480 (671)
                      . +..|.|+|.|.+..
T Consensus       156 ~-~~~v~l~v~r~g~~  170 (192)
T 3k1r_A          156 T-EKTVSIKVRHIGLI  170 (192)
T ss_dssp             S-SSEEEEEEEECCEE
T ss_pred             C-CCeEEEEEEECCcc
Confidence            7 89999999998763

>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=99.19  E-value=5.8e-11  Score=106.59  Aligned_cols=90  Identities=23%  Similarity=0.415  Sum_probs=77.4

Q ss_pred             CeEEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhcC
Q psy1156         387 GQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSG  466 (671)
Q Consensus       387 ~~~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~~  466 (671)
                      ..+.|.|.+..  .+|||.+.++.+...   .|++|..|.+++||+++|+|++||+|++|||+.|.++++.+++.+++..
T Consensus        17 ~~~~v~l~~~~--~glG~~l~~~~~~~~---~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~l~~~   91 (116)
T 2dm8_A           17 QEMIIEISKGR--SGLGLSIVGGKDTPL---NAIVIHEVYEEGAAARDGRLWAGDQILEVNGVDLRNSSHEEAITALRQT   91 (116)
T ss_dssp             SCEEEEEECCS--SCCCCCCBCCTTSSC---SSEECCCCCSSSHHHHHTCCCTTCEEEEETTEECSSSCHHHHHHHHHTC
T ss_pred             CEEEEEEEECC--CcccEEEeCCCCCCc---CCEEEEEECCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence            45788887754  899999997664321   4899999999999999999999999999999999999999999999977


Q ss_pred             CCeEEEEEEeCCccc
Q psy1156         467 PLNMDLLISRTSLKK  481 (671)
Q Consensus       467 g~~V~L~V~R~~~~~  481 (671)
                      +..|.|+|.|.+...
T Consensus        92 ~~~v~l~v~R~~~~~  106 (116)
T 2dm8_A           92 PQKVRLVVYRDEAHY  106 (116)
T ss_dssp             CSEEEEEEECCSSCC
T ss_pred             CCeEEEEEEeCCccc
Confidence            789999999977643

>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.19  E-value=5.6e-11  Score=104.79  Aligned_cols=88  Identities=18%  Similarity=0.307  Sum_probs=76.2

Q ss_pred             CCeEEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhc
Q psy1156         386 EGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISS  465 (671)
Q Consensus       386 ~~~~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~  465 (671)
                      .+.+.|.|..   ..+|||.|.++.+..    .+++|..|.+++||+++| |++||+|++|||+.+.++++.+++.+++.
T Consensus         4 g~~~~v~l~~---~~~~G~~l~gg~~~~----~~v~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~~~~   75 (103)
T 1wf7_A            4 GSSGSVSLVG---PAPWGFRLQGGKDFN----MPLTISSLKDGGKASQAH-VRIGDVVLSIDGISAQGMTHLEAQNKIKA   75 (103)
T ss_dssp             CCCEEEEEES---SSCCSCCEEEETTTT----EEEEECCCCTTCHHHHTT-CCTTCBEEEETTEECSSCCHHHHHHHHHH
T ss_pred             CCEEEEEEeC---CCccCEEEeccccCC----CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHc
Confidence            3557788862   378999999987643    679999999999999999 99999999999999999999999999987


Q ss_pred             CCCeEEEEEEeCCccc
Q psy1156         466 GPLNMDLLISRTSLKK  481 (671)
Q Consensus       466 ~g~~V~L~V~R~~~~~  481 (671)
                      .+..+.|+|.|.+...
T Consensus        76 ~g~~v~l~v~R~g~~~   91 (103)
T 1wf7_A           76 CTGSLNMTLQRASAAA   91 (103)
T ss_dssp             CSSEEEEEECCCSCCC
T ss_pred             CCCeEEEEEEeCCCcC
Confidence            7889999999877643

>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ domain, arhgef11, KIAA0380, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2omj_A 2os6_A

Probab=99.18  E-value=1.7e-10  Score=99.94  Aligned_cols=82  Identities=23%  Similarity=0.306  Sum_probs=72.0

Q ss_pred             CCeEEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhc
Q psy1156         386 EGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISS  465 (671)
Q Consensus       386 ~~~~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~  465 (671)
                      ...++|.|.+..  .+|||.+.+.        .|++|..|.+++||+++| |++||+|++|||+.+.++.+.+++..++ 
T Consensus         7 ~~~r~v~l~~~~--~~~G~~l~~~--------~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~~~-   74 (93)
T 2dls_A            7 GVQRCVIIQKDQ--HGFGFTVSGD--------RIVLVQSVRPGGAAMKAG-VKEGDRIIKVNGTMVTNSSHLEVVKLIK-   74 (93)
T ss_dssp             CCEEEEEEECSS--SSCCEEEECS--------SSCEEEEECSSSTTTTTT-CCSSCEEEEETTEECSSSCHHHHHHHHT-
T ss_pred             CCCEEEEEEeCC--CceeEEEeCC--------CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHhhc-
Confidence            456789988754  7899999752        589999999999999999 9999999999999999999998888887 


Q ss_pred             CCCeEEEEEEeCCc
Q psy1156         466 GPLNMDLLISRTSL  479 (671)
Q Consensus       466 ~g~~V~L~V~R~~~  479 (671)
                      .+..+.|+|.|...
T Consensus        75 ~g~~v~l~v~R~~~   88 (93)
T 2dls_A           75 SGAYVALTLLGSSS   88 (93)
T ss_dssp             SSSEEEEEEECCCC
T ss_pred             CCCEEEEEEEECCC
Confidence            68999999999754

>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural genomics, mouse cDNA, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.18  E-value=4.8e-11  Score=110.38  Aligned_cols=84  Identities=21%  Similarity=0.368  Sum_probs=72.8

Q ss_pred             ceeeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcC
Q psy1156         575 TFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIK  654 (671)
Q Consensus       575 ~~~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg  654 (671)
                      ..+.+.|.+..  .+|||.+.+..      .+++|..|.++|||+++|+|++||+|++|||++|.+++|.+++.+|+..+
T Consensus        27 ~~~~~~l~k~~--~glG~~i~~~~------~~v~V~~V~~gspA~~aG~L~~GD~Il~VnG~~v~~~s~~d~~~~l~~~~   98 (126)
T 1wif_A           27 KVIQTKLTVGN--LGLGLVVIQNG------PYLQISHLINKGAAASDGILQPGDVLISVGHANVLGYTLREFLKLLQNIT   98 (126)
T ss_dssp             CEEEEEEECCT--TCCCCCEEEET------TEEEECCCCTTSSGGGCSSSCTTCBEEEESSSCCTTCCHHHHHHHHTSCC
T ss_pred             ceEEEEEecCC--ceEeEEEEcCC------CcEEEEEECCCCHHHHcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCC
Confidence            45677888775  89999998632      37899999999999999999999999999999999999999999999843


Q ss_pred             -CCcEEEEEEeCC
Q psy1156         655 -NGSISLHICRRL  666 (671)
Q Consensus       655 -~~~VtL~V~Rr~  666 (671)
                       ...|.|+|.|+.
T Consensus        99 ~G~~v~l~V~R~~  111 (126)
T 1wif_A           99 IGTVLQIKAYRGF  111 (126)
T ss_dssp             SSCEEEEEEESSS
T ss_pred             CCCEEEEEEEECC
Confidence             467999999974

>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.18  E-value=3.7e-11  Score=104.20  Aligned_cols=85  Identities=24%  Similarity=0.320  Sum_probs=73.6

Q ss_pred             EEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhcCCC
Q psy1156         389 TMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPL  468 (671)
Q Consensus       389 ~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~~g~  468 (671)
                      ..|++.+.. ..+|||++.++.+..    .|++|..|.+++||+++| |++||+|++|||+.+.++++.++..+++..+.
T Consensus         6 ~~~~~~~~~-~~~lG~~l~~g~~~~----~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~   79 (94)
T 1vb7_A            6 SGLTVDVAG-PAPWGFRISGGRDFH----TPIIVTKVTERGKAEAAD-LRPGDIIVAINGQSAENMLHAEAQSKIRQSAS   79 (94)
T ss_dssp             CCEEEEECS-SSCCSBCCEEETTTT----EEEECCCBCTTSSHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHTCCS
T ss_pred             EEEEEEecC-CCCccEEEecccCCC----CCeEEEEECCCCHHHHCC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCC
Confidence            345565543 479999999877543    689999999999999999 99999999999999999999999999997678


Q ss_pred             eEEEEEEeCCc
Q psy1156         469 NMDLLISRTSL  479 (671)
Q Consensus       469 ~V~L~V~R~~~  479 (671)
                      .+.|+|.|.+.
T Consensus        80 ~v~l~v~R~g~   90 (94)
T 1vb7_A           80 PLRLQLDRSSG   90 (94)
T ss_dssp             SEEEEEECCCC
T ss_pred             cEEEEEEECCc
Confidence            99999999765

>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.35A {Homo sapiens}

Probab=99.18  E-value=1.2e-10  Score=100.62  Aligned_cols=90  Identities=27%  Similarity=0.391  Sum_probs=73.8

Q ss_pred             eEEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhcCC
Q psy1156         388 QTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGP  467 (671)
Q Consensus       388 ~~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~~g  467 (671)
                      .+.|.|.+.  ..+|||++.++.........|++|..|.+++||+++|.|++||+|++|||+.+.++++.++..+++..+
T Consensus         5 ~~~v~l~~~--~~~lG~~i~~~~~~~~~~~~~~~V~~v~~~s~A~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~   82 (97)
T 2iwn_A            5 TFDVELTKN--VQGLGITIAGYIGDKKLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTG   82 (97)
T ss_dssp             EEEEEEECB--TTBSCEEEECCCCC----CCCCEEEEECTTCHHHHHCCCCTTCEEEEETTEECTTSCHHHHHHHHHTCC
T ss_pred             EEEEEEecC--CCCCcEEEEccCCCCCCCCCCEEEEEeCCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            456777654  478999999864322111268999999999999999999999999999999999999999999988888


Q ss_pred             CeEEEEEEeCCc
Q psy1156         468 LNMDLLISRTSL  479 (671)
Q Consensus       468 ~~V~L~V~R~~~  479 (671)
                      ..+.|+|.|.+.
T Consensus        83 ~~v~l~v~r~g~   94 (97)
T 2iwn_A           83 QTVLLTLMRRGE   94 (97)
T ss_dssp             SEEEEEEEEEEE
T ss_pred             CeEEEEEEeCCC
Confidence            899999988653

>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling protein; NMR {Homo sapiens}

Probab=99.18  E-value=2.4e-11  Score=102.74  Aligned_cols=80  Identities=20%  Similarity=0.304  Sum_probs=71.1

Q ss_pred             CeEEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhcC
Q psy1156         387 GQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSG  466 (671)
Q Consensus       387 ~~~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~~  466 (671)
                      .++.|+|.+..  .+|||.+.++        .|++|..|.++|||+++| |++||+|++|||+.+.++++.++..+++..
T Consensus         2 ~~r~v~l~~~~--~g~G~~~~~~--------~~~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~   70 (83)
T 2kv8_A            2 RVRSVEVARGR--AGYGFTLSGQ--------APCVLSCVMRGSPADFVG-LRAGDQILAVNEINVKKASHEDVVKLIGKC   70 (83)
T ss_dssp             CEEEEEECCCS--SCCSCBCCCS--------SSCBCCBCCTTSTTTTTT-CCTTCEEEEETTEECSSCCHHHHHHHHTTC
T ss_pred             CcEEEEEEeCC--CcccEEEEcC--------CCeEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence            45789998854  7899988752        579999999999999999 999999999999999999999999999877


Q ss_pred             CCeEEEEEEeC
Q psy1156         467 PLNMDLLISRT  477 (671)
Q Consensus       467 g~~V~L~V~R~  477 (671)
                      +..+.|+|.|.
T Consensus        71 ~~~v~l~v~R~   81 (83)
T 2kv8_A           71 SGVLHMVIAEG   81 (83)
T ss_dssp             SSCEEEEEECC
T ss_pred             CCeEEEEEEcC
Confidence            78899999885

>2edp_A Fragment, shroom family member 4; APX/shroom family member, KIAA1202 protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.17  E-value=5.8e-11  Score=104.38  Aligned_cols=88  Identities=22%  Similarity=0.292  Sum_probs=75.0

Q ss_pred             CCCeEEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhc-CCCCCCCEEEccCCeeccCCCHHHHHHHH
Q psy1156         385 QEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKE-GCLELGDEIISVNGQRLRGLTMTQAKSII  463 (671)
Q Consensus       385 ~~~~~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~ra-G~L~~GD~IlaVNG~~V~~~s~~~av~~L  463 (671)
                      ..++..+.+.+.. ..+|||.+.++.+..    .+++|..|.+++||+++ | |++||+|++|||+.+.++ +.+++.++
T Consensus         7 ~~~~~~~~v~~~~-~~~~G~~~~gg~~~~----~~v~V~~V~~~spA~~agG-L~~GD~I~~ing~~v~~~-~~~~~~~~   79 (100)
T 2edp_A            7 GGSFQYVPVQLQG-GAPWGFTLKGGLEHC----EPLTVSKIEDGGKAALSQK-MRTGDELVNINGTPLYGS-RQEALILI   79 (100)
T ss_dssp             CCCCEEEEEECCS-CSCCCCCEEEEGGGT----EEEEECCCCTTSHHHHHTS-CCTTCEEEEETTEECCSC-SHHHHHHH
T ss_pred             CCCcEEEEEEECC-CCCcCEEEeccCCCC----CCeEEEEECCCCHHHHcCC-CCCCCEEEEECCEEccch-HHHHHHHH
Confidence            4566777776643 379999999876543    67999999999999999 7 999999999999999987 88899999


Q ss_pred             hcCCCeEEEEEEeCCc
Q psy1156         464 SSGPLNMDLLISRTSL  479 (671)
Q Consensus       464 ~~~g~~V~L~V~R~~~  479 (671)
                      +..+..+.|+|.|.+.
T Consensus        80 ~~~~~~v~l~v~R~~~   95 (100)
T 2edp_A           80 KGSFRILKLIVRRRNS   95 (100)
T ss_dssp             HTCCSSCEEEEEECCC
T ss_pred             HhCCCeEEEEEEeCCC
Confidence            8778899999999765

>2eei_A PDZ domain-containing protein 1; regulatory factor, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.17  E-value=3.2e-11  Score=106.62  Aligned_cols=86  Identities=14%  Similarity=0.288  Sum_probs=75.5

Q ss_pred             CCeEEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhc
Q psy1156         386 EGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISS  465 (671)
Q Consensus       386 ~~~~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~  465 (671)
                      ...+.|+|.|.  .++|||.+.+....     .|++|..|.++|||+++| |++||+|++|||+++..+++.++..+++.
T Consensus         7 ~~~r~v~l~k~--~~~~G~~l~~~~~~-----~g~~V~~V~~~spA~~aG-l~~GD~I~~vng~~v~~~~~~~~~~~~~~   78 (106)
T 2eei_A            7 GQPRLCYLVKE--GGSYGFSLKTVQGK-----KGVYMTDITPQGVAMRAG-VLADDHLIEVNGENVEDASHEEVVEKVKK   78 (106)
T ss_dssp             SSSEEEEEECC--SSSCSCCEECCSSC-----CSCEECCCCTTSHHHHHT-CCSSEEEEEETTEECTTCCHHHHHHHHHH
T ss_pred             CCCEEEEEEEC--CCCCCEEEEeccCC-----CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHh
Confidence            35688999884  58999999865432     689999999999999999 99999999999999999999999999987


Q ss_pred             CCCeEEEEEEeCCc
Q psy1156         466 GPLNMDLLISRTSL  479 (671)
Q Consensus       466 ~g~~V~L~V~R~~~  479 (671)
                      .+..+.|+|.|...
T Consensus        79 ~~~~v~l~v~r~~~   92 (106)
T 2eei_A           79 SGSRVMFLLVDKET   92 (106)
T ss_dssp             HCSEEEEEECCTTT
T ss_pred             CCCeEEEEEEcCch
Confidence            78899999988665

>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus}

Probab=99.17  E-value=3e-11  Score=124.80  Aligned_cols=90  Identities=24%  Similarity=0.258  Sum_probs=79.8

Q ss_pred             CCCeEEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhh-cCCCCCCCEEEccCCeeccCCCHHHHHHHH
Q psy1156         385 QEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEK-EGCLELGDEIISVNGQRLRGLTMTQAKSII  463 (671)
Q Consensus       385 ~~~~~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~r-aG~L~~GD~IlaVNG~~V~~~s~~~av~~L  463 (671)
                      ...++.|+|.|. ..++|||+|.++.+..    .|++|..|.+||||++ +| |++||+|++|||++|.++++.+++.+|
T Consensus        75 ~~~~r~V~L~k~-~~~glGf~I~gg~d~~----~gi~V~~V~~gspA~~~aG-L~~GD~Il~VNG~~v~~~t~~e~v~~l  148 (263)
T 1z87_A           75 LLQRRRVTVRKA-DAGGLGISIKGGRENK----MPILISKIFKGLAADQTEA-LFVGDAILSVNGEDLSSATHDEAVQAL  148 (263)
T ss_dssp             SCSSEEECCCTT-TTCCCCCEEEEETTTT----EEEEEEECCTTSHHHHCTT-CCSSCEEEEESSCBCTTSCHHHHHHHH
T ss_pred             CCccEEEEEEeC-CCCCEeEEEeeccCCC----CCEEEEEECCCCHHHHhCC-CCCCCEEEEECCEECCCcCHHHHHHHH
Confidence            346789999885 3589999999987654    6899999999999999 57 999999999999999999999999999


Q ss_pred             hcCCCeEEEEEEeCCcc
Q psy1156         464 SSGPLNMDLLISRTSLK  480 (671)
Q Consensus       464 ~~~g~~V~L~V~R~~~~  480 (671)
                      +..+..|.|+|.|....
T Consensus       149 ~~~g~~V~L~V~R~~~~  165 (263)
T 1z87_A          149 KKTGKEVVLEVKYMKEV  165 (263)
T ss_dssp             HHCCSCCCEEEECCSSS
T ss_pred             hcCCCeEEEEEEeCccc
Confidence            98888999999997654

>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; structural genomi consortium, SGC, ATP-binding, cell junction; 1.60A {Homo sapiens}

Probab=99.17  E-value=8.9e-11  Score=100.33  Aligned_cols=83  Identities=25%  Similarity=0.354  Sum_probs=69.1

Q ss_pred             CeEEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhc-
Q psy1156         387 GQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISS-  465 (671)
Q Consensus       387 ~~~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~-  465 (671)
                      +++.|+|.|..  .+|||++.+..+.     .+++|..| +++||+ +| |++||+|++|||+.+.++++.+++.+++. 
T Consensus         3 ~~~~v~l~k~~--~g~G~~~~~~~~~-----~~~~v~~v-~~spA~-aG-l~~GD~I~~vng~~v~~~~~~~~~~~l~~~   72 (88)
T 3bpu_A            3 ELITVHIVKGP--MGFGFTIADSPGG-----GGQRVKQI-VDSPRS-RG-LKEGDLIVEVNKKNVQALTHNQVVDMLVES   72 (88)
T ss_dssp             EEEEEEEECBT--TBSSCEEEECTTS-----SSEEEEEC-CC--CC-TT-CCTTCEEEEETTEECTTSCHHHHHHHHHTS
T ss_pred             cEEEEEEEcCC--CceeEEEEecCCC-----CcEEEEEe-cCChhH-hC-CCCCCEEEEECCEEcCCCCHHHHHHHHHhC
Confidence            46789998854  8999999975432     68999887 999999 88 99999999999999999999999999974 


Q ss_pred             -CCCeEEEEEEeCCc
Q psy1156         466 -GPLNMDLLISRTSL  479 (671)
Q Consensus       466 -~g~~V~L~V~R~~~  479 (671)
                       .+..+.|+|.|.+.
T Consensus        73 ~~g~~v~l~v~R~g~   87 (88)
T 3bpu_A           73 PKGSEVTLLVQRQTR   87 (88)
T ss_dssp             CTTCEEEEEEEEECC
T ss_pred             CCCCEEEEEEEeCCc
Confidence             57889999988653

>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding protein; PDZ domain, cytoplasm, membrane, polymorphism, protein binding; 2.70A {Homo sapiens}

Probab=99.17  E-value=9.3e-11  Score=103.53  Aligned_cols=83  Identities=20%  Similarity=0.322  Sum_probs=69.3

Q ss_pred             eeEEEeeCCCCCcccEEEecCCCC----CCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHh
Q psy1156         577 HTIVFEKGPGKKGLGFTIVGGKDS----PRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKT  652 (671)
Q Consensus       577 ~~V~L~K~~g~~~LGfsL~Gg~ds----~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~  652 (671)
                      +.|.|.+.. .++|||.|.+....    .....|++|..|.++|||+++| |++||+|++|||++|.++++.+++.+|+.
T Consensus        17 ~~v~l~~~~-~~~~G~~l~~~~~~~~~~~~~~~~~~V~~V~~~spA~~aG-l~~GD~I~~vng~~v~~~~~~~~~~~l~~   94 (104)
T 2z17_A           17 KLVTVEKQD-NETFGFEIQSYRPQNQNACSSEMFTLICKIQEDSPAHCAG-LQAGDVLANINGVSTEGFTYKQVVDLIRS   94 (104)
T ss_dssp             CEEEEECCT-TSCCSEEEEECCCCCCSSSCCSCCEEEEEECTTSHHHHHT-CCTTCBCCEETTEECTTCCHHHHHHHHHH
T ss_pred             eEEEEEeCC-CCCccEEEEeeecccCCcccCCCCeEEEEECCCChHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHHHh
Confidence            467788875 36899999984221    1123589999999999999999 99999999999999999999999999999


Q ss_pred             cCCCcEEEEE
Q psy1156         653 IKNGSISLHI  662 (671)
Q Consensus       653 sg~~~VtL~V  662 (671)
                      .+ +.|.|+|
T Consensus        95 ~~-~~v~l~v  103 (104)
T 2z17_A           95 SG-NLLTIET  103 (104)
T ss_dssp             TT-TEEEEEC
T ss_pred             CC-CcEEEEE
Confidence            85 5888876

>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.17  E-value=1.6e-10  Score=105.54  Aligned_cols=92  Identities=33%  Similarity=0.475  Sum_probs=74.7

Q ss_pred             ceeeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcC
Q psy1156         575 TFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIK  654 (671)
Q Consensus       575 ~~~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg  654 (671)
                      ....+.+.+.....+|||.+....... ...|++|..|.++|||+++|+|++||+|++|||++|.  ++.++..+|+..+
T Consensus        19 ~~~~~~~~~~~~~~~lG~~~~~~~~~~-~~~gv~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~--~~~~~~~~l~~~~   95 (124)
T 1wh1_A           19 ELEEVDLYRMNSQDKLGLTVCYRTDDE-DDIGIYISEIDPNSIAAKDGRIREGDRIIQINGIEVQ--NREEAVALLTSEE   95 (124)
T ss_dssp             EECCBCCCCSSTTCCCCEEEECCCCCS-SCCCEEEEEECSSSHHHHTCCCCTTCEEEEESSCBCC--SHHHHHHHHTCSS
T ss_pred             eEEEEEEEecCCCCcccEEEEecCCCC-CCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECC--CHHHHHHHHHhCC
Confidence            445566666654468999998765432 1258999999999999999999999999999999998  6899999998864


Q ss_pred             CCcEEEEEEeCCCCC
Q psy1156         655 NGSISLHICRRLKSK  669 (671)
Q Consensus       655 ~~~VtL~V~Rr~~~~  669 (671)
                      ...|.|+|.|+....
T Consensus        96 g~~v~l~v~R~g~~~  110 (124)
T 1wh1_A           96 NKNFSLLIARPELQL  110 (124)
T ss_dssp             CCSCCEEEEECSSCC
T ss_pred             CCEEEEEEEECCEEe
Confidence            568999999987643

>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex, erbin., signaling protein; 1.25A {Homo sapiens} SCOP: b.36.1.1 PDB: 1mfl_A

Probab=99.17  E-value=1.7e-10  Score=99.98  Aligned_cols=85  Identities=29%  Similarity=0.363  Sum_probs=70.5

Q ss_pred             EEEEEEeCCCCCcccEEEeeecCC---CC-CCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHh
Q psy1156         389 TMVRVNRRDFNEELGIYIAKIKNS---SE-GNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIIS  464 (671)
Q Consensus       389 ~~V~L~k~~~~~~LGfsI~gg~~~---~~-g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~  464 (671)
                      ++|++.+.   .+|||+|.++.+.   +. ....|++|..|.++|||++ | |++||+|++|||+.+.++++.+++..++
T Consensus         5 ~~v~l~~~---~~lG~~i~gg~~~~~~p~~~~~~gv~V~~V~~~spA~~-g-L~~GD~I~~vng~~v~~~~~~~~~~~~~   79 (95)
T 1mfg_A            5 IRVRVEKD---PELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK-L-LQPGDKIIQANGYSFINIEHGQAVSLLK   79 (95)
T ss_dssp             EEEEEECS---SSCSEEEEECBTSCCCSSSTTCCCEEEEEECTTSTTTT-T-CCTTCEEEEETTEECTTCBHHHHHHHHH
T ss_pred             EEEEECCC---CCCCEEEeCCcCccCCccccCCCCEEEEEECCCCchhh-C-CCCCCEEEEECCEEcCCCCHHHHHHHhh
Confidence            45666553   4899999987641   11 0126899999999999999 8 9999999999999999999999999998


Q ss_pred             cCCCeEEEEEEeCC
Q psy1156         465 SGPLNMDLLISRTS  478 (671)
Q Consensus       465 ~~g~~V~L~V~R~~  478 (671)
                      ..+..+.|+|.|..
T Consensus        80 ~~~~~v~l~v~R~~   93 (95)
T 1mfg_A           80 TFQNTVELIIVREV   93 (95)
T ss_dssp             HCCSEEEEEEEEEC
T ss_pred             cCCCeEEEEEEeCC
Confidence            88899999998853

>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI, structural genomics, alternative splicing, cell cycle, cell division, cell junction; NMR {Homo sapiens}

Probab=99.16  E-value=2.4e-10  Score=104.04  Aligned_cols=89  Identities=27%  Similarity=0.409  Sum_probs=74.1

Q ss_pred             CeEEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhcC
Q psy1156         387 GQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSG  466 (671)
Q Consensus       387 ~~~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~~  466 (671)
                      ..+.|.+.+.  ..+|||.|.++.....+. .|++|..|.++|||+++|.|++||+|++|||+.+.++++.+++.+++..
T Consensus        30 ~~~~v~l~~~--~~~lG~~l~~~~~~~~g~-~gv~V~~V~~gspA~~aG~L~~GD~Il~Ing~~v~~~~~~~~~~~l~~~  106 (121)
T 2kom_A           30 KRLNIQLKKG--TEGLGFSITSRDVTIGGS-APIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLVGKSQEEVVSLLRST  106 (121)
T ss_dssp             EEEEEEEECC--TTCCCEEEECCCCSSSSS-CCEEEEEECTTSHHHHHTCCCSSSEEEEETTEECTTSCHHHHHHHHHHC
T ss_pred             eEEEEEEEcC--CCcEeEEEEeccCCcCCC-CCEEEEEECCCChHHHcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcC
Confidence            3455666653  478999999876433233 6899999999999999999999999999999999999999999999853


Q ss_pred             --CCeEEEEEEeCC
Q psy1156         467 --PLNMDLLISRTS  478 (671)
Q Consensus       467 --g~~V~L~V~R~~  478 (671)
                        +..|.|+|.|.+
T Consensus       107 ~~g~~v~l~v~R~g  120 (121)
T 2kom_A          107 KMEGTVSLLVFRQE  120 (121)
T ss_dssp             CSSCEEEEEEEECC
T ss_pred             CCCCEEEEEEEeCC
Confidence              788999998864

>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3, microtubule associated serine/threonine kinase 3, PDZ domain, structural genomics; 1.20A {Homo sapiens} PDB: 2w7r_A 2kqf_A 2kyl_A 3ps4_A

Probab=99.16  E-value=1.1e-10  Score=101.80  Aligned_cols=87  Identities=18%  Similarity=0.271  Sum_probs=71.9

Q ss_pred             EEEEEeCCCCCcccEEEeeecCCCCC-C--cCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhcC
Q psy1156         390 MVRVNRRDFNEELGIYIAKIKNSSEG-N--IGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSG  466 (671)
Q Consensus       390 ~V~L~k~~~~~~LGfsI~gg~~~~~g-~--~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~~  466 (671)
                      +|.|.+.  ..+|||++.++...... .  ..|++|..|.++|||+++| |++||+|++|||+.+.++++.++..+++..
T Consensus         5 ~v~l~~~--~~~~Gf~l~~~~~~~~~~~~~~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~   81 (99)
T 3khf_A            5 PIVIHSS--GKKYGFSLRAIRVYMGDSDVYTVHHVVWSVEDGSPAQEAG-LRAGDLITHINGESVLGLVHMDVVELLLKS   81 (99)
T ss_dssp             CEEEEC---CCCCCEEEEEEEEESSSSSCEEEEEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHHS
T ss_pred             CEEEEeC--CCCCcEEEEecccccCccccccCCeEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhcC
Confidence            4666664  58999999876532110 0  1367999999999999999 999999999999999999999999999988


Q ss_pred             CCeEEEEEEeCCc
Q psy1156         467 PLNMDLLISRTSL  479 (671)
Q Consensus       467 g~~V~L~V~R~~~  479 (671)
                      +..+.|+|.|.+.
T Consensus        82 g~~v~l~v~r~~~   94 (99)
T 3khf_A           82 GNKISLRTTALEN   94 (99)
T ss_dssp             CSEEEEEEECSCS
T ss_pred             CCEEEEEEEECCC
Confidence            9999999998765

>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion; 1.99A {Homo sapiens} PDB: 3shu_A

Probab=99.15  E-value=1.3e-10  Score=106.51  Aligned_cols=73  Identities=29%  Similarity=0.604  Sum_probs=64.9

Q ss_pred             CcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHh-cCCCcEEEEEEeCC
Q psy1156         588 KGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKT-IKNGSISLHICRRL  666 (671)
Q Consensus       588 ~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~-sg~~~VtL~V~Rr~  666 (671)
                      .+|||.+.++.+     .|++|..|.++|||+++| |++||+|++|||++|.++++.+++.+|+. .....|.|+|.|+.
T Consensus        39 ~~lG~~l~~~~~-----~gv~V~~V~~gspA~~aG-L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~~  112 (124)
T 3tsv_A           39 DSVGLRLAGGND-----VGIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTILAQKKK  112 (124)
T ss_dssp             SCCCEEEEECTT-----SCEEEEEECTTCHHHHTT-CCTTEEEEEETTEECSSCCHHHHHHHHHHSCTTCEEEEEEEECH
T ss_pred             CceeEEEecCCC-----CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhcCCCCEEEEEEEECC
Confidence            789999987654     489999999999999999 99999999999999999999999998885 33467999998874

>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing protein 3; structural genomics consortium, SGC, PDZ domain, signaling P; 1.60A {Homo sapiens}

Probab=99.15  E-value=1.8e-10  Score=104.77  Aligned_cols=83  Identities=23%  Similarity=0.220  Sum_probs=71.4

Q ss_pred             CCCeEEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHh
Q psy1156         385 QEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIIS  464 (671)
Q Consensus       385 ~~~~~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~  464 (671)
                      ..+++.|+|.|..  .+|||+|.++.       .|.+|..|.+  +|..+| |++||+|++|||++|.+++|.+++.+|+
T Consensus        10 ~~~~~~V~L~Kg~--~G~GFsI~~~~-------~g~~V~~I~~--~~~~aG-L~~GD~Il~VNG~~v~~~~h~evv~~lk   77 (113)
T 3soe_A           10 AGLLVTIPLIKGP--KGFGFAIADSP-------TGQKVKMILD--SQWCQG-LQKGDIIKEIYHQNVQNLTHLQVVEVLK   77 (113)
T ss_dssp             HCEEEEEEEECBT--TBSSEEEEEET-------TEEEEEEESC--GGGSTT-CCTTCEEEEETTEECTTSCHHHHHHHHH
T ss_pred             CCCEEEEEEEECC--CcccEEEeCCC-------CCcEEEEecC--hHHhCC-CCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            3467899999964  79999997653       5778999988  467777 9999999999999999999999999999


Q ss_pred             cC--CCeEEEEEEeCCc
Q psy1156         465 SG--PLNMDLLISRTSL  479 (671)
Q Consensus       465 ~~--g~~V~L~V~R~~~  479 (671)
                      ..  +..|.|+|.|.+.
T Consensus        78 ~~~~G~~v~L~V~R~g~   94 (113)
T 3soe_A           78 QFPVGADVPLLILRGGP   94 (113)
T ss_dssp             HSCTTCEEEEEEEESSC
T ss_pred             cCCCCCEEEEEEEECCc
Confidence            64  6799999999875

>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A

Probab=99.15  E-value=1.8e-10  Score=112.59  Aligned_cols=92  Identities=25%  Similarity=0.322  Sum_probs=79.4

Q ss_pred             ceeeEEEeeCCCCCcccEEEecCCCCCC-CCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhc
Q psy1156         575 TFHTIVFEKGPGKKGLGFTIVGGKDSPR-GAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTI  653 (671)
Q Consensus       575 ~~~~V~L~K~~g~~~LGfsL~Gg~ds~~-g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~s  653 (671)
                      +..+|.|.++. ..+|||.+.++.+... +..|++|..|.++|||+++|+|++||+|++|||++|.++++.++..+|+..
T Consensus         6 ~~~~v~l~~~~-~~glG~~i~~~~~~~~~~~~~~~V~~v~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~   84 (196)
T 1p1d_A            6 ETTEVVLTADP-VTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDS   84 (196)
T ss_dssp             EEEEEEEECBT-TTBCCCEEEECSSCSSSCSCSEEEEECCTTSHHHHTSCCCSSCCEEEETTBCSTTSCHHHHHHHHHTC
T ss_pred             EEEEEEEEeCC-CCccCEEEeCCcCCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence            45688998886 4899999999865432 346899999999999999999999999999999999999999999999987


Q ss_pred             C-CCcEEEEEEeCCC
Q psy1156         654 K-NGSISLHICRRLK  667 (671)
Q Consensus       654 g-~~~VtL~V~Rr~~  667 (671)
                      + ...|.|.|.|..+
T Consensus        85 ~~g~~v~l~v~R~~~   99 (196)
T 1p1d_A           85 SITSKVTLEIEFDVA   99 (196)
T ss_dssp             CSSSEEEEEEEECSC
T ss_pred             CCCCeEEEEEEecCC
Confidence            4 4679999998774

>2d8i_A T-cell lymphoma invasion and metastasis 1 variant; PDZ domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.14  E-value=8e-11  Score=106.83  Aligned_cols=88  Identities=25%  Similarity=0.408  Sum_probs=73.2

Q ss_pred             ceeeEEEeeCCCC-CcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhc
Q psy1156         575 TFHTIVFEKGPGK-KGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTI  653 (671)
Q Consensus       575 ~~~~V~L~K~~g~-~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~s  653 (671)
                      ..+.|.|.+.... .+|||+|.+....  +..|++|..|.++|||+++| |++||+|++|||++|..+++.+++.+|+. 
T Consensus        15 ~~~~v~l~k~~~~~~~~G~~v~~~~~~--~~~gv~V~~V~~~spA~~aG-L~~GD~Il~Ing~~v~~~~~~~~~~~l~~-   90 (114)
T 2d8i_A           15 VTQSIHIEKSDTAADTYGFSLSSVEED--GIRRLYVNSVKETGLASKKG-LKAGDEILEINNRAADALNSSMLKDFLSQ-   90 (114)
T ss_dssp             EEEEEEEECSCTTTCCCCCEEEEEEET--TEEEEEEEECCTTSSHHHHT-CCTTCCEEEESSCBGGGCCHHHHHHHHTS-
T ss_pred             ceEEEEEEeCCCCccccCEEEEecCcC--CcCCEEEEEeCCCCHHHHcC-CCCCCEEEEECCEECCCcCHHHHHHHHhC-
Confidence            4578899888632 2799999874322  22489999999999999999 99999999999999999899999999975 


Q ss_pred             CCCcEEEEEEeCCCC
Q psy1156         654 KNGSISLHICRRLKS  668 (671)
Q Consensus       654 g~~~VtL~V~Rr~~~  668 (671)
                        ..+.|+|.|....
T Consensus        91 --~~v~l~v~R~p~~  103 (114)
T 2d8i_A           91 --PSLGLLVRTYPEL  103 (114)
T ss_dssp             --SEEEEEEEECCCS
T ss_pred             --CcEEEEEEECCCC
Confidence              3799999997754

>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus}

Probab=99.14  E-value=2.6e-10  Score=111.61  Aligned_cols=88  Identities=28%  Similarity=0.345  Sum_probs=75.7

Q ss_pred             ceeeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcC
Q psy1156         575 TFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIK  654 (671)
Q Consensus       575 ~~~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg  654 (671)
                      ..+.|.|.+.. ..+|||+|.++.+..   .|++|..|.++|||+++|.|++||+|++|||++|.+++|.+++.+++..+
T Consensus         7 ~~~~v~l~~~~-~~~lG~~i~~~~~~~---~~~~V~~v~~~spA~~aggl~~GD~I~~vng~~v~~~~~~~~~~~~~~~g   82 (200)
T 2qt5_A            7 GSTVVELMKKE-GTTLGLTVSGGIDKD---GKPRVSNLRQGGIAARSDQLDVGDYIKAVNGINLAKFRHDEIISLLKNVG   82 (200)
T ss_dssp             EEEEEEEECCT-TCCCCEEEECCTTSS---SCSEEEEECTTSHHHHTTSCCTTCEEEEETTEECTTSCHHHHHHHHHTCC
T ss_pred             CCEEEEEEeCC-CCCCCEEEecccCCC---CCeEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence            34578887765 489999999887653   57899999999999999339999999999999999999999999998875


Q ss_pred             CCcEEEEEEeCCC
Q psy1156         655 NGSISLHICRRLK  667 (671)
Q Consensus       655 ~~~VtL~V~Rr~~  667 (671)
                       ..|.|+|.|+.+
T Consensus        83 -~~v~l~v~R~~~   94 (200)
T 2qt5_A           83 -ERVVLEVEYELP   94 (200)
T ss_dssp             -SEEEEEEEEECC
T ss_pred             -CeEEEEEeccCC
Confidence             689999998654

>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker, structural genomics, struc genomics consortium, SGC, structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1

Probab=99.14  E-value=2.6e-10  Score=100.09  Aligned_cols=92  Identities=24%  Similarity=0.328  Sum_probs=73.4

Q ss_pred             CeEEEEEEeCCCCCcccEEEeeecCCCCC-----CcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHH
Q psy1156         387 GQTMVRVNRRDFNEELGIYIAKIKNSSEG-----NIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKS  461 (671)
Q Consensus       387 ~~~~V~L~k~~~~~~LGfsI~gg~~~~~g-----~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~  461 (671)
                      ..++|.|.+. ....|||.+.++......     ...|++|..|.++|||+++|.|++||+|++|||+.+.++++.++..
T Consensus         4 dp~~v~l~~~-~~~~lG~~~~~~~~~~~~~~~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~~~~~~~~   82 (103)
T 2fcf_A            4 QPRRVELWRE-PSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVE   82 (103)
T ss_dssp             SCEEEEECCC-C-CCCCEEEECCCC-------------EEEEEECSSSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHH
T ss_pred             CCEEEEEEeC-CCCceeEEEEccCCCCcccccCCCCCCEEEEEeCCCCcHHHcCCCCCCCEEEEECCEECCCCCHHHHHH
Confidence            3478888774 357899999875532110     1158999999999999999999999999999999999999999999


Q ss_pred             HHhcCCCeEEEEEEeCCc
Q psy1156         462 IISSGPLNMDLLISRTSL  479 (671)
Q Consensus       462 ~L~~~g~~V~L~V~R~~~  479 (671)
                      +|+..++.+.|+|.|...
T Consensus        83 ~l~~~~~~v~l~v~r~~~  100 (103)
T 2fcf_A           83 AIRKAGNPVVFMVQSIIS  100 (103)
T ss_dssp             HHHTCCSSEEEEEECCCC
T ss_pred             HHHhCCCcEEEEEEECCC
Confidence            999777799999988654

>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction, membrane, phosphoprot domain, tight junction, transmembrane; 2.40A {Homo sapiens}

Probab=99.14  E-value=3.2e-10  Score=97.22  Aligned_cols=81  Identities=28%  Similarity=0.517  Sum_probs=68.0

Q ss_pred             eeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcCCC
Q psy1156         577 HTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKNG  656 (671)
Q Consensus       577 ~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg~~  656 (671)
                      ..|.+.+......|||.+.         .|++|..|.++|+|+++|+|++||+|++|||+++.++++.++..+|+..+ +
T Consensus         4 ~~v~~~~~~~~~~~g~~~~---------~gv~V~~v~~~s~A~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~-~   73 (92)
T 3cyy_A            4 TKVTLVKSAKNEEYGLRLA---------SHIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIERSK-G   73 (92)
T ss_dssp             EEEEEECSSTTSCCCEEEE---------EEEEEEEECTTCHHHHSCCCCTTCEEEEETTEECTTCCHHHHHHHHHTTT-T
T ss_pred             EEEEEEeCCCCCCCCEEEe---------CCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC-C
Confidence            3566666554568999886         27999999999999999999999999999999999999999999999875 6


Q ss_pred             cEEEEEEeCCC
Q psy1156         657 SISLHICRRLK  667 (671)
Q Consensus       657 ~VtL~V~Rr~~  667 (671)
                      .+.|+|.|+..
T Consensus        74 ~v~l~v~r~g~   84 (92)
T 3cyy_A           74 KLKMVVQRDER   84 (92)
T ss_dssp             EEEEEEEC---
T ss_pred             cEEEEEEeCCc
Confidence            89999988764

>1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain, intracellular signaling cascade, signal transduction; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.14  E-value=4.8e-11  Score=107.57  Aligned_cols=82  Identities=29%  Similarity=0.424  Sum_probs=70.7

Q ss_pred             eeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcCCC
Q psy1156         577 HTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKNG  656 (671)
Q Consensus       577 ~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg~~  656 (671)
                      +.|.|.++.  .+|||.+.+.       .|++|..|.+++||+++| |++||+|++|||++|.++++.+++.+|+..+..
T Consensus        17 r~v~l~~~~--~~~G~~l~~~-------~~v~V~~V~~~spA~~aG-L~~GD~Il~InG~~v~~~~~~d~~~~i~~~~~~   86 (111)
T 1vae_A           17 RGIHFTVEE--GDLGFTLRGN-------TPVQVHFLDPHCSASLAG-AKEGDYIVSIQGVDCKWLTVSEVMKLLKSFGGE   86 (111)
T ss_dssp             CCCCEECCS--SCCSCCEESS-------SSCEECCCCTTSSHHHHH-CCTTCEEEEETTEECSSCCHHHHHHHHHHTTTS
T ss_pred             eEEEEEcCC--CcccEEEeCC-------CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCc
Confidence            467787764  8899999754       368999999999999999 999999999999999999999999999987645


Q ss_pred             cEEEEEEeCCCC
Q psy1156         657 SISLHICRRLKS  668 (671)
Q Consensus       657 ~VtL~V~Rr~~~  668 (671)
                      .|.|+|.|....
T Consensus        87 ~v~l~V~~~~~~   98 (111)
T 1vae_A           87 EVEMKVVSLLDS   98 (111)
T ss_dssp             EECEEEECEECC
T ss_pred             eEEEEEEecCCC
Confidence            699999886644

>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal peptide complex, high affnity ligand, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A

Probab=99.14  E-value=1.6e-10  Score=101.77  Aligned_cols=88  Identities=28%  Similarity=0.357  Sum_probs=73.3

Q ss_pred             CCeEEEEEEeCCCCCcccEEEeeecCC---CC-CCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHH
Q psy1156         386 EGQTMVRVNRRDFNEELGIYIAKIKNS---SE-GNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKS  461 (671)
Q Consensus       386 ~~~~~V~L~k~~~~~~LGfsI~gg~~~---~~-g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~  461 (671)
                      ...+.|++.+.   .+|||+|.++.+.   +. ....|++|..|.++|||++ | |++||+|++|||+.+.++++.+++.
T Consensus        10 ~~~~~v~l~~~---~~lG~~i~gg~~~~~~p~~~~~~gv~V~~V~~~spA~~-g-L~~GD~I~~vng~~v~~~~~~~~~~   84 (103)
T 1n7t_A           10 KQEIRVRVEKD---PELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK-L-LQPGDKIIQANGYSFINIEHGQAVS   84 (103)
T ss_dssp             CCCEEEEEECS---SCCCBEEEECTTSSBCSSCSSCCSEECCCBSSSSTTSS-S-CCTTCEEEEETTEECSSCCHHHHHH
T ss_pred             cEEEEEEEccC---CCccEEEEcccCCCCCccccCCCCEEEEEECCCCchHH-C-CCCCCEEEEECCEECCCCCHHHHHH
Confidence            45567888763   4899999987531   11 0126899999999999999 8 9999999999999999999999999


Q ss_pred             HHhcCCCeEEEEEEeCC
Q psy1156         462 IISSGPLNMDLLISRTS  478 (671)
Q Consensus       462 ~L~~~g~~V~L~V~R~~  478 (671)
                      .++..+..+.|+|.|..
T Consensus        85 ~~~~~g~~v~l~v~R~~  101 (103)
T 1n7t_A           85 LLKTFQNTVELIIVREV  101 (103)
T ss_dssp             HHHHCCSEEEEEEECCC
T ss_pred             HhhcCCCeEEEEEEecC
Confidence            99988899999998864

>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3, DLG3-human presynaptic protein, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.14  E-value=8.4e-11  Score=104.79  Aligned_cols=88  Identities=26%  Similarity=0.390  Sum_probs=78.0

Q ss_pred             CCCeEEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHh
Q psy1156         385 QEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIIS  464 (671)
Q Consensus       385 ~~~~~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~  464 (671)
                      ...++.|+|.+..  .+|||++.++.+.     .+++|..|.+++||+++|+|++||+|++|||+.+.++++.+++.+++
T Consensus        13 ~~~~~~v~l~k~~--~glG~~l~~~~~~-----~gv~V~~V~~~s~A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~~~   85 (113)
T 1um7_A           13 AREPRKIILHKGS--TGLGFNIVGGEDG-----EGIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNATHEQAAAALK   85 (113)
T ss_dssp             CCSEEEEEEECCS--SCSSBCCBCCSTT-----CCCBCCCBCSSSHHHHTTCCCTTCEEEEESSCBCTTCCHHHHHHHHH
T ss_pred             CCceEEEEEEECC--CcccEEEEeccCC-----CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            4578899998854  7899999976542     68999999999999999999999999999999999999999999998


Q ss_pred             cCCCeEEEEEEeCCc
Q psy1156         465 SGPLNMDLLISRTSL  479 (671)
Q Consensus       465 ~~g~~V~L~V~R~~~  479 (671)
                      ..+..+.|+|.|...
T Consensus        86 ~~~~~v~l~v~r~~~  100 (113)
T 1um7_A           86 RAGQSVTIVAQYRPE  100 (113)
T ss_dssp             SCCSEEEEEEECCHH
T ss_pred             hCCCcEEEEEEECcc
Confidence            888899999988654

>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural genomics, structura genomics consortium, SGC, signaling protein; 1.12A {Homo sapiens} PDB: 2pku_A

Probab=99.14  E-value=3.2e-10  Score=102.41  Aligned_cols=86  Identities=19%  Similarity=0.279  Sum_probs=73.9

Q ss_pred             CeEEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhcC
Q psy1156         387 GQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSG  466 (671)
Q Consensus       387 ~~~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~~  466 (671)
                      ..+.|.|.+.. .++|||.+.++.+..    .+++|..|.++|||+++|.|++||+|++|||+.+.+.++.++..+++..
T Consensus        24 ~~~~V~l~~~~-~~~lG~~l~~~~~~~----~~~~V~~V~~gspA~~aG~L~~GD~I~~Ing~~v~~~~~~~~~~~l~~~   98 (114)
T 2gzv_A           24 VPGKVTLQKDA-QNLIGISIGGGAQYC----PCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEV   98 (114)
T ss_dssp             CCEEEEEECCT-TSCCSEEEEECCC------CCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHC
T ss_pred             CCEEEEEEECC-CCcEeEEEEeCCCCC----CCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence            56789998853 577999999876432    5899999999999999999999999999999999999999999999877


Q ss_pred             CCeEEEEEEeC
Q psy1156         467 PLNMDLLISRT  477 (671)
Q Consensus       467 g~~V~L~V~R~  477 (671)
                      ++.+.|+|.+.
T Consensus        99 ~~~v~l~v~~~  109 (114)
T 2gzv_A           99 KGEVTIHYNKL  109 (114)
T ss_dssp             CSEEEEEEECC
T ss_pred             CCeEEEEEEec
Confidence            77888988653

>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function; 1.80A {Homo sapiens} PDB: 3ch8_A

Probab=99.13  E-value=1.8e-10  Score=112.05  Aligned_cols=75  Identities=36%  Similarity=0.616  Sum_probs=66.7

Q ss_pred             CcccEEEecCCCC---C--CCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcCCCcEEEEE
Q psy1156         588 KGLGFTIVGGKDS---P--RGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKNGSISLHI  662 (671)
Q Consensus       588 ~~LGfsL~Gg~ds---~--~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg~~~VtL~V  662 (671)
                      .+|||+|.|+.+.   +  ....|++|..|.++|||++ | |++||+|++|||++|.+++|.+++.+++..+ +.|.|+|
T Consensus         2 ~g~Gf~i~gg~~~~~~~~~~~~~g~~V~~v~~~spA~~-g-l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~-~~v~l~v   78 (195)
T 2qbw_A            2 PELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK-L-LQPGDKIIQANGYSFINIEHGQAVSLLKTFQ-NTVELII   78 (195)
T ss_dssp             CCSSEEEEECTTSCCCSSCTTCCSEEEEEECTTSTTTT-T-CCTTCEEEEETTEECTTCCHHHHHHHHHHCC-SEEEEEE
T ss_pred             CcccEEEECCcCCCCCccccCCCCEEEEEECCCChHHh-C-CCCCCEEEEECCEECCCCCHHHHHHHHHcCC-CeEEEEE
Confidence            5799999998753   1  2356999999999999999 8 9999999999999999999999999999986 6999999


Q ss_pred             EeC
Q psy1156         663 CRR  665 (671)
Q Consensus       663 ~Rr  665 (671)
                      .|+
T Consensus        79 ~r~   81 (195)
T 2qbw_A           79 VRE   81 (195)
T ss_dssp             EEE
T ss_pred             EEc
Confidence            993

>3kzd_A TIAM-1, T-lymphoma invasion and metastasis-inducing prote; PDZ, cell junction, cell adhesion, signaling protein, nucleotide exchange factor; 1.30A {Homo sapiens} PDB: 3kze_A

Probab=99.13  E-value=3.2e-10  Score=99.86  Aligned_cols=84  Identities=27%  Similarity=0.466  Sum_probs=67.6

Q ss_pred             ceeeEEEeeCCC-CCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhc
Q psy1156         575 TFHTIVFEKGPG-KKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTI  653 (671)
Q Consensus       575 ~~~~V~L~K~~g-~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~s  653 (671)
                      ..+.|.|.|... ..+|||+|.+....  +..|++|..|.++|||+++| |++||+|++|||++|.++++.++..++++ 
T Consensus         6 ~~~~v~i~k~~~~~~~~Gf~v~~~~~~--~~~g~~V~~V~~~spA~~aG-L~~GD~Il~vng~~v~~~~~~~l~~~l~~-   81 (94)
T 3kzd_A            6 VTHSIHIEKSDTAADTYGFSLSSVEED--GIRRLYVNSVKETGLASKKG-LKAGDEILEINNRAADALNSSMLKDFLSQ-   81 (94)
T ss_dssp             EEEEEEEEC------CCSEEEEEECSS--SSCEEEEEEECTTSHHHHTT-CCTTCEEEEETTEEGGGCCHHHHHHHHHS-
T ss_pred             ceeEEEEEeCCCCcCCcCEEEEecCCC--CcCCeEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhC-
Confidence            456788998863 24799999874321  23589999999999999999 99999999999999999999999999985 


Q ss_pred             CCCcEEEEEEe
Q psy1156         654 KNGSISLHICR  664 (671)
Q Consensus       654 g~~~VtL~V~R  664 (671)
                        ..++|+|..
T Consensus        82 --~~l~ltV~~   90 (94)
T 3kzd_A           82 --PSLGLLVRT   90 (94)
T ss_dssp             --SEEEEEEEE
T ss_pred             --CeEEEEEEe
Confidence              468888854

>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.12  E-value=2.1e-10  Score=104.11  Aligned_cols=88  Identities=24%  Similarity=0.427  Sum_probs=73.1

Q ss_pred             CCeEEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhc
Q psy1156         386 EGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISS  465 (671)
Q Consensus       386 ~~~~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~  465 (671)
                      ..++.+.+.+.   ++|||+|.++.+...   ..++|..|.+||||+++|.|++||+|++|||+.+.+++|.+++.+|+.
T Consensus        17 ~~~~~~~~~~~---~glG~~i~gg~~~~~---~~i~I~~V~~gspA~~aggL~~GD~Il~Ing~~v~~~~~~~~~~~l~~   90 (118)
T 1v6b_A           17 KDVRLLRIKKE---GSLDLALEGGVDSPV---GKVVVSAVYEGGAAERHGGVVKGDEIMAINGKIVTDYTLAEAEAALQK   90 (118)
T ss_dssp             CCEEEEEEESC---SCCCCEEEEBTTSSS---CSEEEEECCTTSHHHHHCSSCTTCEEEEESSCBCTTCBHHHHHHHHHH
T ss_pred             ceEEEEEECCC---CccCEEEEcccCCCC---CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHH
Confidence            35677777653   589999998875432   349999999999999994499999999999999999999999999984


Q ss_pred             C----CCeEEEEEEeCCc
Q psy1156         466 G----PLNMDLLISRTSL  479 (671)
Q Consensus       466 ~----g~~V~L~V~R~~~  479 (671)
                      .    +..|.|+|.|...
T Consensus        91 ~~~~~g~~v~l~v~r~~~  108 (118)
T 1v6b_A           91 AWNQGGDWIDLVVAVCPP  108 (118)
T ss_dssp             HHHHTCSEEEEEEECCCS
T ss_pred             hhhcCCCeEEEEEEeCCc
Confidence            3    7899999998543

>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ domain, PDZ2, acetylation, cell projection, membrane, polymorphism; NMR {Homo sapiens}

Probab=99.12  E-value=1.8e-10  Score=100.36  Aligned_cols=83  Identities=22%  Similarity=0.310  Sum_probs=70.1

Q ss_pred             eEEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhcCC
Q psy1156         388 QTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGP  467 (671)
Q Consensus       388 ~~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~~g  467 (671)
                      .+.|.|.+..  .+|||.+.++...     .|++|..|.++|||+++| |++||+|++|||+.+.++++.++..+|+...
T Consensus        10 ~~~~~l~~~~--~g~G~~~~~~~~~-----~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~   81 (98)
T 2jxo_A           10 PRLCTMKKGP--SGYGFNLHSDKSK-----PGQFIRSVDPDSPAEASG-LRAQDRIVEVNGVCMEGKQHGDVVSAIRAGG   81 (98)
T ss_dssp             CEEEEEECTT--TCCCEEEECCCSS-----SCEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHTTT
T ss_pred             cEEEEEEeCC--CcccEEEEecCCC-----CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence            4678887753  7899999876533     689999999999999999 9999999999999999999999999998654


Q ss_pred             C-eEEEEEEeCC
Q psy1156         468 L-NMDLLISRTS  478 (671)
Q Consensus       468 ~-~V~L~V~R~~  478 (671)
                      + .+.|+|.|.+
T Consensus        82 ~~~~~l~v~R~g   93 (98)
T 2jxo_A           82 DETKLLVVDRET   93 (98)
T ss_dssp             TEEEEEECCHHH
T ss_pred             CcEEEEEEECCc
Confidence            4 4567877754

>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane, HOST- interaction, structural genomics consortium, synaptosome, T junction; 1.80A {Homo sapiens}

Probab=99.11  E-value=4.4e-10  Score=102.93  Aligned_cols=93  Identities=24%  Similarity=0.318  Sum_probs=76.4

Q ss_pred             CCeEEEEEEeCCCCCcccEEEeeecCCCC-----CCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHH
Q psy1156         386 EGQTMVRVNRRDFNEELGIYIAKIKNSSE-----GNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAK  460 (671)
Q Consensus       386 ~~~~~V~L~k~~~~~~LGfsI~gg~~~~~-----g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av  460 (671)
                      ...+.|.+.+. ..+.|||.+.++.....     ....|++|..|.++|||+++|.|++||+|++|||+.|.++++.+++
T Consensus        23 ~~p~~v~l~k~-~~~~lGi~v~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~  101 (123)
T 2iwq_A           23 MQPRRVELWRE-PSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAV  101 (123)
T ss_dssp             CCCEEEEECCC-TTSCCSEEEEECC---------CCCCSEEEEEECSSSHHHHHCCCCTTCEEEEETTEECTTCCHHHHH
T ss_pred             CCCEEEEEEec-CCCCccEEEEeccCccccccccCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHH
Confidence            34578888875 35799999987543211     1125899999999999999999999999999999999999999999


Q ss_pred             HHHhcCCCeEEEEEEeCCc
Q psy1156         461 SIISSGPLNMDLLISRTSL  479 (671)
Q Consensus       461 ~~L~~~g~~V~L~V~R~~~  479 (671)
                      .+|+..+..+.|+|.|...
T Consensus       102 ~~l~~~~~~v~l~v~r~~~  120 (123)
T 2iwq_A          102 EAIRKAGNPVVFMVQSIIS  120 (123)
T ss_dssp             HHHHHCCSSEEEEEECCCC
T ss_pred             HHHHcCCCeEEEEEEECCc
Confidence            9999777899999988653

>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ domain, cytoskeleton, actin binding, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.11  E-value=4.2e-11  Score=105.69  Aligned_cols=75  Identities=32%  Similarity=0.389  Sum_probs=67.5

Q ss_pred             CcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcCCCcEEEEEEeCCC
Q psy1156         588 KGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKNGSISLHICRRLK  667 (671)
Q Consensus       588 ~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg~~~VtL~V~Rr~~  667 (671)
                      .+|||.+.++.+..   .|++|..|.++|||+++| |++||+|++|||++|.++++.+++.+|+.. ...|.|+|.|+..
T Consensus        15 ~~lG~~l~~g~~~~---~~~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~l~~~-g~~v~l~v~R~g~   89 (103)
T 1v5l_A           15 APWGFRLSGGIDFN---QPLVITRITPGSKAAAAN-LCPGDVILAIDGFGTESMTHADAQDRIKAA-SYQLCLKIDRAET   89 (103)
T ss_dssp             SCCSBCCEEETTTT---EEEECSCBCTTSTTGGGT-CCTTCBEEEETTEECSSCCHHHHHHHHTTC-CSEEECEECCCTT
T ss_pred             CCcCEEEeccccCC---CCeEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhC-CCeEEEEEEECCe
Confidence            68999999876542   479999999999999999 999999999999999988999999999987 4789999988764

>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS, nitric oxide synthase, oxidoreductase; NMR {Rattus norvegicus} SCOP: b.36.1.1

Probab=99.11  E-value=1.5e-10  Score=105.81  Aligned_cols=87  Identities=25%  Similarity=0.372  Sum_probs=74.9

Q ss_pred             ceeeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCC-CCCCEEEEECCeecCCCCHHHHHHHHHhc
Q psy1156         575 TFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRL-KEGDEILAINGQVCHDLTHLEAISLFKTI  653 (671)
Q Consensus       575 ~~~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrL-r~GDrILeVNG~sV~~lSheEAV~lLK~s  653 (671)
                      ..+.|.|.++. ..+|||.+.+..+.    .|++|..|.++|||+++| | ++||+|++|||+++.++++.+++.+|+..
T Consensus         8 ~~~~v~l~~~~-~~glG~~~~~~~~~----~~~~V~~V~~~spA~~aG-ll~~GD~I~~ing~~v~~~~~~~~~~~l~~~   81 (127)
T 1b8q_A            8 NVISVRLFKRK-VGGLGFLVKERVSK----PPVIISDLIRGGAAEQSG-LIQAGDIILAVNDRPLVDLSYDSALEVLRGI   81 (127)
T ss_dssp             CSEEEEEECTT-TSCCSCCEEECTTS----SCEEECCCSSSSSHHHHS-SCCTTTCCCEETTEECSSSCHHHHHHHHHSC
T ss_pred             ceEEEEEEeCC-CCcEeEEEEecCCC----CCEEEEEeCCCCHHHHcC-CCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence            45678888875 37899999876542    489999999999999999 6 99999999999999988999999999986


Q ss_pred             CCCcEEEEEEeCCC
Q psy1156         654 KNGSISLHICRRLK  667 (671)
Q Consensus       654 g~~~VtL~V~Rr~~  667 (671)
                      ....+.|+|.|+..
T Consensus        82 ~g~~v~l~v~R~g~   95 (127)
T 1b8q_A           82 ASETHVVLILRGPE   95 (127)
T ss_dssp             CSSCEEEEEECCCC
T ss_pred             CCCeEEEEEEeCCc
Confidence            55689999998764

>3sfj_A TAX1-binding protein 3; PDZ:peptide complex, signaling protein-inhibitor complex; 1.24A {Homo sapiens} PDB: 3dj3_A

Probab=99.11  E-value=4.5e-10  Score=98.70  Aligned_cols=88  Identities=28%  Similarity=0.381  Sum_probs=70.1

Q ss_pred             EEEEEEeC--CCCCcccEEEeeecCCC-----C---CCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHH
Q psy1156         389 TMVRVNRR--DFNEELGIYIAKIKNSS-----E---GNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQ  458 (671)
Q Consensus       389 ~~V~L~k~--~~~~~LGfsI~gg~~~~-----~---g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~  458 (671)
                      ..|.+.+.  ....+|||++.++.+..     .   ....|++|..|.++|||+++| |++||+|++|||+.+.++++.+
T Consensus         6 ~~i~~~~~~~~~~~~lG~~i~g~~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~   84 (104)
T 3sfj_A            6 QRVEIHKLRQGENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAG-LQIGDKIMQVNGWDMTMVTHDQ   84 (104)
T ss_dssp             EEEEEECEEETTEEECSEEEEECTTSCGGGCSSCSSTTCCSEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHH
T ss_pred             EEEEEEEccCCCCCcccEEEECccccCccccccccCCCCCCEEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCCHHH
Confidence            34555552  22347999999776531     0   112789999999999999999 9999999999999999999999


Q ss_pred             HHHHHhc-CCCeEEEEEEeC
Q psy1156         459 AKSIISS-GPLNMDLLISRT  477 (671)
Q Consensus       459 av~~L~~-~g~~V~L~V~R~  477 (671)
                      ++.+++. .+..+.|+|.|.
T Consensus        85 ~~~~l~~~~g~~v~l~v~R~  104 (104)
T 3sfj_A           85 ARKRLTKRSEEVVRLLVTRQ  104 (104)
T ss_dssp             HHHHHTCTTCSEEEEEEEEC
T ss_pred             HHHHHHhCCCCEEEEEEEcC
Confidence            9999974 467899999873

>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1; copper chaperone for superoxide dismutase, neuronal adaptor, protein transport; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.11  E-value=4.6e-10  Score=97.37  Aligned_cols=78  Identities=26%  Similarity=0.488  Sum_probs=68.9

Q ss_pred             CeEEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhcC
Q psy1156         387 GQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSG  466 (671)
Q Consensus       387 ~~~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~~  466 (671)
                      ..+.+.+.+.+..++|||.+.          .| +|..|.++|||+++| |++||+|++|||+++.+.++.+++.+|+..
T Consensus        11 ~~~~~~i~~~~~~~~lG~~~~----------~G-~V~~V~~~spA~~aG-L~~GD~Il~Ing~~v~~~~~~~~~~~l~~~   78 (90)
T 1y7n_A           11 NVTTVLIRRPDLRYQLGFSVQ----------NG-IICSLMRGGIAERGG-VRVGHRIIEINGQSVVATPHEKIVHILSNA   78 (90)
T ss_dssp             SCEEEEEEESSTTSCCCEEEE----------TT-EEEEECTTSHHHHHT-CCSSCEEEEETTEECTTSCHHHHHHHHHHC
T ss_pred             CcceEEEEeCCCccccCeEec----------CC-EEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence            446677777667789999985          35 899999999999999 999999999999999999999999999978


Q ss_pred             CCeEEEEEEe
Q psy1156         467 PLNMDLLISR  476 (671)
Q Consensus       467 g~~V~L~V~R  476 (671)
                      +..+.|+|.+
T Consensus        79 g~~v~l~v~p   88 (90)
T 1y7n_A           79 VGEIHMKTMP   88 (90)
T ss_dssp             CEEEEEEEEC
T ss_pred             CCeEEEEEEE
Confidence            8899999875

>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L homolog; PDZ domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.11  E-value=3.2e-10  Score=103.22  Aligned_cols=95  Identities=19%  Similarity=0.237  Sum_probs=77.6

Q ss_pred             CCCeEEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHh
Q psy1156         385 QEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIIS  464 (671)
Q Consensus       385 ~~~~~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~  464 (671)
                      ..+.+.|.|.+. ...+|||+|.++.........+++|..|.+++||+++|.|++||+|++|||+.+.++++.+++.+|+
T Consensus        13 ~~~~~~v~l~k~-~~~glG~~l~~~~~~~~~~~~~~~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~   91 (122)
T 1v5q_A           13 HTETTEVVLTAD-PVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLR   91 (122)
T ss_dssp             CEEEEEEEECCC-SSSSSCEEEECCSCCSSSCSSCCEEEEECTTSHHHHSCCCCTTCCEEEETTEESSSSCHHHHHHHHH
T ss_pred             cceeEEEEEEeC-CCCccCEEEecccccCCcCCCCcEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            346678888775 3589999999863211111157999999999999999999999999999999999999999999998


Q ss_pred             cC--CCeEEEEEEeCCcc
Q psy1156         465 SG--PLNMDLLISRTSLK  480 (671)
Q Consensus       465 ~~--g~~V~L~V~R~~~~  480 (671)
                      ..  +..+.|+|.|.+..
T Consensus        92 ~~~~g~~v~l~v~R~~~~  109 (122)
T 1v5q_A           92 DSSITSKVTLEIEFDVAE  109 (122)
T ss_dssp             HHTTTTCEEEEEEEECCC
T ss_pred             hCCCCCeEEEEEEECCcc
Confidence            54  67999999997654

>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune enteropathy-related antigen AIE-75 ,antigen NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2kbs_A

Probab=99.10  E-value=3.3e-10  Score=101.44  Aligned_cols=83  Identities=30%  Similarity=0.468  Sum_probs=71.1

Q ss_pred             eeeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcCC
Q psy1156         576 FHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKN  655 (671)
Q Consensus       576 ~~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg~  655 (671)
                      .+.|.+.+.. ..+|||.|.++.+..   .|++|..|.++++|+++| |++||+|++|||++|.++++.+++.+++..  
T Consensus        16 ~~~v~~~~~~-~~~lG~~l~~~~~~~---~gv~V~~V~~~s~A~~aG-L~~GD~Il~vng~~v~~~~~~~~~~~~~~~--   88 (114)
T 1x5n_A           16 EKKVFISLVG-SRGLGCSISSGPIQK---PGIFISHVKPGSLSAEVG-LEIGDQIVEVNGVDFSNLDHKEAVNVLKSS--   88 (114)
T ss_dssp             SEEEEECCCS-SCCCCEEEEECCSSS---CSEEEEEECTTSTTTTTT-CCTTCEEEEETTEETTSCCTTHHHHHHHHC--
T ss_pred             cEEEEEEEcC-CCceeEEEeecCCCC---CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhcC--
Confidence            3567776554 489999999875432   589999999999999999 999999999999999999999999999875  


Q ss_pred             CcEEEEEEeC
Q psy1156         656 GSISLHICRR  665 (671)
Q Consensus       656 ~~VtL~V~Rr  665 (671)
                      ..|.|+|.|+
T Consensus        89 ~~v~l~v~r~   98 (114)
T 1x5n_A           89 RSLTISIVAA   98 (114)
T ss_dssp             SSEEEEECSS
T ss_pred             CeEEEEEEcC
Confidence            5899999886

>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein; structural protein-hydrolase complex, peptide binding protei; NMR {Homo sapiens}

Probab=98.69  E-value=8.3e-12  Score=112.71  Aligned_cols=83  Identities=33%  Similarity=0.580  Sum_probs=70.4

Q ss_pred             ceeeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhH-hCCCCCCCEEEEECCeecCCCCHHHHHHHHHhc
Q psy1156         575 TFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAE-DGRLKEGDEILAINGQVCHDLTHLEAISLFKTI  653 (671)
Q Consensus       575 ~~~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAar-aGrLr~GDrILeVNG~sV~~lSheEAV~lLK~s  653 (671)
                      ..+.|.|.+.. ..+|||.+.++.+..   .|++|..|.++|||++ +| |++||+|++|||++|.++++.+++.+|+..
T Consensus        27 ~~~~v~l~k~~-~~glG~~l~~g~~~~---~gv~V~~V~~~spA~~~aG-L~~GD~Il~ING~~v~~~~~~~~~~~l~~~  101 (112)
T 2lob_A           27 GIRKVLLLKED-HEGLGISITGGKEHG---VPILISEIHPGQPADRCGG-LHVGDAILAVNGVNLRDTKHKEAVTILSQQ  101 (112)
Confidence            34567887765 479999999876543   4899999999999999 77 999999999999999989999999999887


Q ss_pred             CCCcEEEEEE
Q psy1156         654 KNGSISLHIC  663 (671)
Q Consensus       654 g~~~VtL~V~  663 (671)
                      + +.|.|+|.
T Consensus       102 ~-~~v~l~V~  110 (112)
T 2lob_A          102 R-GEIEFEVV  110 (112)
Confidence            5 56888774

>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural genomics, mouse cDNA, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.10  E-value=2e-10  Score=106.26  Aligned_cols=84  Identities=18%  Similarity=0.280  Sum_probs=74.0

Q ss_pred             CCCeEEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHh
Q psy1156         385 QEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIIS  464 (671)
Q Consensus       385 ~~~~~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~  464 (671)
                      ....+.+.|.+..  .+|||++.+..       .+++|..|.++|||+++|+|++||+|++|||+.|.+.++.+++.+|+
T Consensus        25 ~~~~~~~~l~k~~--~glG~~i~~~~-------~~v~V~~V~~gspA~~aG~L~~GD~Il~VnG~~v~~~s~~d~~~~l~   95 (126)
T 1wif_A           25 LNKVIQTKLTVGN--LGLGLVVIQNG-------PYLQISHLINKGAAASDGILQPGDVLISVGHANVLGYTLREFLKLLQ   95 (126)
T ss_dssp             CCCEEEEEEECCT--TCCCCCEEEET-------TEEEECCCCTTSSGGGCSSSCTTCBEEEESSSCCTTCCHHHHHHHHT
T ss_pred             CCceEEEEEecCC--ceEeEEEEcCC-------CcEEEEEECCCCHHHHcCCCCCCCEEEEECCEEcCCCCHHHHHHHHh
Confidence            3466788888754  89999998643       67999999999999999999999999999999999999999999998


Q ss_pred             c--CCCeEEEEEEeC
Q psy1156         465 S--GPLNMDLLISRT  477 (671)
Q Consensus       465 ~--~g~~V~L~V~R~  477 (671)
                      .  .+..|.|+|.|+
T Consensus        96 ~~~~G~~v~l~V~R~  110 (126)
T 1wif_A           96 NITIGTVLQIKAYRG  110 (126)
T ss_dssp             SCCSSCEEEEEEESS
T ss_pred             cCCCCCEEEEEEEEC
Confidence            5  478899999997

>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction, membrane, phosphorylati domain, protein binding; 1.70A {Homo sapiens} PDB: 2jwe_A 2osg_A

Probab=99.10  E-value=6.7e-10  Score=92.52  Aligned_cols=69  Identities=32%  Similarity=0.579  Sum_probs=61.9

Q ss_pred             CCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcCCCcEEEEEEeC
Q psy1156         587 KKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKNGSISLHICRR  665 (671)
Q Consensus       587 ~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg~~~VtL~V~Rr  665 (671)
                      ...|||.+.         .|++|..|.++|+|+++|+|++||+|++|||+++.++++.++..+|+..+ +.+.|+|.|+
T Consensus        12 ~~~~g~~~~---------~gv~V~~v~~~s~A~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~-~~v~l~v~R~   80 (81)
T 2rcz_A           12 NEEYGLRLA---------SHIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIERSK-GKLKMVVQRD   80 (81)
T ss_dssp             TCCCCEEEE---------EEEEEEEECTTSHHHHHSSCCTTCEEEEETTEECTTCCHHHHHHHHHTST-TEEEEEEEC-
T ss_pred             CCCCCEEEe---------CCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCC-CeEEEEEEeC
Confidence            468999886         27999999999999999999999999999999999999999999999875 6899999875

>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.09  E-value=8e-10  Score=101.17  Aligned_cols=85  Identities=31%  Similarity=0.503  Sum_probs=70.4

Q ss_pred             eeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcCCC
Q psy1156         577 HTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKNG  656 (671)
Q Consensus       577 ~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg~~  656 (671)
                      +++.+.... ...|||.+.++....   .|++|..|.++|||+++| |++||+|++|||++|.++++.+++..++..  .
T Consensus        22 ~~v~v~~~~-~~~lG~~~~~~~~~~---~gv~V~~V~~~spA~~aG-L~~GD~I~~vng~~v~~~~~~~~~~~~~~~--~   94 (128)
T 1uf1_A           22 KKVNLVLGD-GRSLGLTIRGGAEYG---LGIYITGVDPGSEAEGSG-LKVGDQILEVNGRSFLNILHDEAVRLLKSS--R   94 (128)
T ss_dssp             EEEEEECCS-SCCCCEEEECCTTTT---CCCEEEEECTTCHHHHHT-CCTTCEEEEETTEECSSCCHHHHHHHHTTC--S
T ss_pred             EEEEEEECC-CCccCEEEECcccCC---CCEEEEEECCCCHHHHCC-CCCCCEEEEECCEECCCCCHHHHHHHHhcC--C
Confidence            455665543 267999998864432   489999999999999999 999999999999999999999999988874  5


Q ss_pred             cEEEEEEeCCCC
Q psy1156         657 SISLHICRRLKS  668 (671)
Q Consensus       657 ~VtL~V~Rr~~~  668 (671)
                      .|.|+|.|....
T Consensus        95 ~v~l~v~R~g~~  106 (128)
T 1uf1_A           95 HLILTVKDVGRL  106 (128)
T ss_dssp             EEEEEEECCSCC
T ss_pred             eEEEEEEECCcc
Confidence            899999987653

>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction, membrane, phosphoprot domain, tight junction, transmembrane; 2.40A {Homo sapiens}

Probab=99.09  E-value=6.4e-10  Score=95.33  Aligned_cols=83  Identities=25%  Similarity=0.452  Sum_probs=70.7

Q ss_pred             eEEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhcCC
Q psy1156         388 QTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGP  467 (671)
Q Consensus       388 ~~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~~g  467 (671)
                      .+.|.+.+......|||.+.          .|++|..|.++|||+++|.|++||+|++|||+.+.++++.++..+++..+
T Consensus         3 ~~~v~~~~~~~~~~~g~~~~----------~gv~V~~v~~~s~A~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~   72 (92)
T 3cyy_A            3 PTKVTLVKSAKNEEYGLRLA----------SHIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIERSK   72 (92)
T ss_dssp             CEEEEEECSSTTSCCCEEEE----------EEEEEEEECTTCHHHHSCCCCTTCEEEEETTEECTTCCHHHHHHHHHTTT
T ss_pred             cEEEEEEeCCCCCCCCEEEe----------CCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            45677777666789999886          47999999999999999999999999999999999999999999999777


Q ss_pred             CeEEEEEEeCCcc
Q psy1156         468 LNMDLLISRTSLK  480 (671)
Q Consensus       468 ~~V~L~V~R~~~~  480 (671)
                      ..+.|+|.|.+..
T Consensus        73 ~~v~l~v~r~g~~   85 (92)
T 3cyy_A           73 GKLKMVVQRDERA   85 (92)
T ss_dssp             TEEEEEEEC----
T ss_pred             CcEEEEEEeCCce
Confidence            7999999987653

>2eaq_A LIM domain only protein 7; conserved hypothetical protein, structural genomics, NPPSFA; 1.46A {Homo sapiens}

Probab=99.09  E-value=3.8e-10  Score=96.63  Aligned_cols=82  Identities=27%  Similarity=0.319  Sum_probs=66.5

Q ss_pred             eEEEeeCCC-CCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhc-CC
Q psy1156         578 TIVFEKGPG-KKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTI-KN  655 (671)
Q Consensus       578 ~V~L~K~~g-~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~s-g~  655 (671)
                      .+.+.+.++ ...|||.+....      .|++|..|.++|||+++| |++||+|++|||+++.+.++.++..+|+.. ..
T Consensus         6 ~~~~~~~~~~~~~lG~~~~~~~------~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~g   78 (90)
T 2eaq_A            6 RISINQTPGKSLDFGFTIKWDI------PGIFVASVEAGSPAEFSQ-LQVDDEIIAINNTKFSYNDSKEWEEAMAKAQET   78 (90)
T ss_dssp             EEEEECCTTCSSCCSEEEEEET------TEEEEEEECTTSHHHHTT-CCTTCEEEEETTEECCTTCHHHHHHHHHHHHHH
T ss_pred             EEEEEecCCCCCcccEEEEecC------CCEEEEEECCCChHHHcC-CCCCCEEEEECCEEccCCCHHHHHHHHHhcCCC
Confidence            455555542 237999987432      389999999999999999 999999999999999777999999999853 23


Q ss_pred             CcEEEEEEeCC
Q psy1156         656 GSISLHICRRL  666 (671)
Q Consensus       656 ~~VtL~V~Rr~  666 (671)
                      ..|.|+|.|+.
T Consensus        79 ~~v~l~v~R~g   89 (90)
T 2eaq_A           79 GHLVMDVRRYG   89 (90)
T ss_dssp             TEEEEEEEEEC
T ss_pred             CEEEEEEEeCC
Confidence            68999998864

>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger, oxidoreductase; 1.25A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1qav_B

Probab=99.09  E-value=8.3e-10  Score=98.41  Aligned_cols=87  Identities=24%  Similarity=0.381  Sum_probs=74.5

Q ss_pred             eEEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhc-C
Q psy1156         388 QTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISS-G  466 (671)
Q Consensus       388 ~~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~-~  466 (671)
                      .+.|.|.+.. ..+|||.+.+..+.     .+++|..|.++|||+++|.|++||+|++|||+.+.++++.++..+++. .
T Consensus         2 ~~~v~l~~~~-~~glG~~~~~~~~~-----~~~~V~~v~~~spA~~aGll~~GD~I~~ing~~v~~~~~~~~~~~l~~~~   75 (112)
T 1qau_A            2 VISVRLFKRK-VGGLGFLVKERVSK-----PPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIA   75 (112)
T ss_dssp             EEEEEEECBT-TTBTSEEEEECSSS-----SCEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTSCHHHHHHHHHHSC
T ss_pred             EEEEEEEcCC-CCceeEEEEecCCC-----CCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence            4678888753 58999999976532     689999999999999999339999999999999999999999999985 4


Q ss_pred             CCeEEEEEEeCCcc
Q psy1156         467 PLNMDLLISRTSLK  480 (671)
Q Consensus       467 g~~V~L~V~R~~~~  480 (671)
                      +..+.|+|.|.+..
T Consensus        76 g~~v~l~v~R~g~~   89 (112)
T 1qau_A           76 SETHVVLILRGPEG   89 (112)
T ss_dssp             SSSEEEEEEECCTT
T ss_pred             CCcEEEEEEeCCcc
Confidence            67899999998764

>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding, protein-binding, RHOB, nitration, cytoplasm, PDZ domain, CAsp8; 1.82A {Homo sapiens}

Probab=99.08  E-value=3.5e-10  Score=101.84  Aligned_cols=81  Identities=16%  Similarity=0.169  Sum_probs=70.4

Q ss_pred             CeEEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhcC
Q psy1156         387 GQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSG  466 (671)
Q Consensus       387 ~~~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~~  466 (671)
                      ..+.|.|.|..  .+|||.+.+.        .+++|..|.+++||+++| |++||+|++|||+++.++++.+++.+++..
T Consensus        23 ~~r~v~l~k~~--~~~G~~l~~~--------~~v~V~~V~~gspA~~AG-L~~GD~Il~VnG~~v~~~~~~dv~~~i~~~   91 (109)
T 2vsv_A           23 MPRSIRFTAEE--GDLGFTLRGN--------APVQVHFLDPYCSASVAG-AREGDYIVSIQLVDCKWLTLSEVMKLLKSF   91 (109)
T ss_dssp             SCEEEEECCGG--GCCCEEEESS--------SSCEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHHTT
T ss_pred             CCEEEEEEeCC--CceeEEEeCC--------CCeEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence            45789998853  8999998642        578999999999999999 999999999999999999999999999876


Q ss_pred             CCe-EEEEEEeCC
Q psy1156         467 PLN-MDLLISRTS  478 (671)
Q Consensus       467 g~~-V~L~V~R~~  478 (671)
                      ++. +.|+|.|..
T Consensus        92 ~~~~v~l~V~~~~  104 (109)
T 2vsv_A           92 GEDEIEMKVVSLL  104 (109)
T ss_dssp             TTSCEEEEEESCC
T ss_pred             CCCeEEEEEEECC
Confidence            664 999998754

>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70 kDa, Na/PI cotransporter C- terminal-associated protein, NAPI-CAP1; NMR {Mus musculus}

Probab=99.08  E-value=3.3e-10  Score=101.72  Aligned_cols=86  Identities=20%  Similarity=0.339  Sum_probs=75.7

Q ss_pred             CeEEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhcC
Q psy1156         387 GQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSG  466 (671)
Q Consensus       387 ~~~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~~  466 (671)
                      ..+++.|.+. ..+.|||.+..+...     .|++|..|.++|||+++| |++||+|++|||+.+.++++.+++.+++..
T Consensus        13 dp~~~~l~~~-~~~~~G~~l~~~~~~-----~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~l~~~   85 (114)
T 2edz_A           13 NPRECKLSKQ-EGQNYGFFLRIEKDT-----DGHLIRVIEEGSPAEKAG-LLDGDRVLRINGVFVDKEEHAQVVELVRKS   85 (114)
T ss_dssp             CCEEEEEECC-TTCCCSCEEECCTTC-----CSCEEECCCTTCTTGGGT-CCTTCEEEEESSSBCSSSCHHHHHHHHHHT
T ss_pred             CCEEEEEeCC-CCCcccEEEEEecCC-----CCeEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence            5678888775 468999999865432     689999999999999999 999999999999999999999999999877


Q ss_pred             CCeEEEEEEeCCc
Q psy1156         467 PLNMDLLISRTSL  479 (671)
Q Consensus       467 g~~V~L~V~R~~~  479 (671)
                      +..+.|+|.|.+.
T Consensus        86 g~~v~l~v~R~~~   98 (114)
T 2edz_A           86 GNSVTLLVLDGDS   98 (114)
T ss_dssp             CSEEEEEEECHHH
T ss_pred             CCEEEEEEEECCc
Confidence            8999999998665

>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding, nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens} PDB: 3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A

Probab=99.07  E-value=5.7e-10  Score=104.32  Aligned_cols=96  Identities=30%  Similarity=0.378  Sum_probs=75.4

Q ss_pred             CCCeEEEEEEeCC--CCCcccEEEeeecCCC-----C---CCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCC
Q psy1156         385 QEGQTMVRVNRRD--FNEELGIYIAKIKNSS-----E---GNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGL  454 (671)
Q Consensus       385 ~~~~~~V~L~k~~--~~~~LGfsI~gg~~~~-----~---g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~  454 (671)
                      ...++.|.|.+..  ....|||.+.++.+..     .   ....|++|..|.++|||+++| |++||+|++|||+.+.++
T Consensus        21 ~~~~~~v~l~~~~~~~~~~lG~~i~~g~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG-L~~GD~I~~vng~~v~~~   99 (139)
T 2vz5_A           21 QSMVQRVEIHKLRQGENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAG-LQIGDKIMQVNGWDMTMV   99 (139)
T ss_dssp             -CEEEEEEEECEEETTEEECSEEEEECTTSCGGGCSSCSSTTCCCEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTC
T ss_pred             CCceEEEEEEEcCCCCcccccEEEEccccCChhhhhhcccCCCCCEEEEEECCCCHHHHCC-CCCCCEEEEECCEEcCCC
Confidence            3466788887732  1238999998865421     0   012689999999999999999 999999999999999999


Q ss_pred             CHHHHHHHHhc-CCCeEEEEEEeCCccc
Q psy1156         455 TMTQAKSIISS-GPLNMDLLISRTSLKK  481 (671)
Q Consensus       455 s~~~av~~L~~-~g~~V~L~V~R~~~~~  481 (671)
                      ++.+++.+|+. .+..+.|+|.|.+...
T Consensus       100 ~~~~~~~~l~~~~g~~v~l~v~R~g~~~  127 (139)
T 2vz5_A          100 THDQARKRLTKRSEEVVRLLVTRQSLQK  127 (139)
T ss_dssp             CHHHHHHHHCCTTCSEEEEEEEECC---
T ss_pred             CHHHHHHHHHhCCCCEEEEEEEECCEEE
Confidence            99999999985 4678999999987643

>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune enteropathy-related antigen AIE-75 ,antigen NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2kbs_A

Probab=99.06  E-value=7.1e-10  Score=99.29  Aligned_cols=86  Identities=24%  Similarity=0.385  Sum_probs=73.2

Q ss_pred             CeEEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhcC
Q psy1156         387 GQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSG  466 (671)
Q Consensus       387 ~~~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~~  466 (671)
                      ..+.|.+.+. ...+|||.+.++.+..    .|++|..|.+++||+++| |++||+|++|||+.+.++.+.+++.+++..
T Consensus        15 ~~~~v~~~~~-~~~~lG~~l~~~~~~~----~gv~V~~V~~~s~A~~aG-L~~GD~Il~vng~~v~~~~~~~~~~~~~~~   88 (114)
T 1x5n_A           15 KEKKVFISLV-GSRGLGCSISSGPIQK----PGIFISHVKPGSLSAEVG-LEIGDQIVEVNGVDFSNLDHKEAVNVLKSS   88 (114)
T ss_dssp             SSEEEEECCC-SSCCCCEEEEECCSSS----CSEEEEEECTTSTTTTTT-CCTTCEEEEETTEETTSCCTTHHHHHHHHC
T ss_pred             CcEEEEEEEc-CCCceeEEEeecCCCC----CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhcC
Confidence            4477888765 3689999999875433    689999999999999999 999999999999999999988898888854


Q ss_pred             CCeEEEEEEeC-Cc
Q psy1156         467 PLNMDLLISRT-SL  479 (671)
Q Consensus       467 g~~V~L~V~R~-~~  479 (671)
                       ..+.|+|.|. +.
T Consensus        89 -~~v~l~v~r~~g~  101 (114)
T 1x5n_A           89 -RSLTISIVAAAGR  101 (114)
T ss_dssp             -SSEEEEECSSTTT
T ss_pred             -CeEEEEEEcCCCC
Confidence             6899999887 54

>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion; 1.99A {Homo sapiens} PDB: 3shu_A

Probab=99.06  E-value=4.3e-10  Score=103.13  Aligned_cols=83  Identities=23%  Similarity=0.371  Sum_probs=70.5

Q ss_pred             CeEEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHh--
Q psy1156         387 GQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIIS--  464 (671)
Q Consensus       387 ~~~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~--  464 (671)
                      .++.+.+.+   +++|||.+.++.+      .|++|..|.++|||+++| |++||+|++|||+.|.++++.+++.+|.  
T Consensus        29 ~~~~~~~~~---~~~lG~~l~~~~~------~gv~V~~V~~gspA~~aG-L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~   98 (124)
T 3tsv_A           29 SMKLVKFRK---GDSVGLRLAGGND------VGIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDFTNIIREEAVLFLLDL   98 (124)
T ss_dssp             CCEEEEEEC---SSCCCEEEEECTT------SCEEEEEECTTCHHHHTT-CCTTEEEEEETTEECSSCCHHHHHHHHHHS
T ss_pred             CeEEEEcCC---CCceeEEEecCCC------CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhc
Confidence            344555433   4799999987653      689999999999999999 9999999999999999999999999887  


Q ss_pred             cCCCeEEEEEEeCCc
Q psy1156         465 SGPLNMDLLISRTSL  479 (671)
Q Consensus       465 ~~g~~V~L~V~R~~~  479 (671)
                      ..+..+.|+|.|.+.
T Consensus        99 ~~g~~v~l~v~R~~~  113 (124)
T 3tsv_A           99 PKGEEVTILAQKKKD  113 (124)
T ss_dssp             CTTCEEEEEEEECHH
T ss_pred             CCCCEEEEEEEECCc
Confidence            467899999998765

>3kzd_A TIAM-1, T-lymphoma invasion and metastasis-inducing prote; PDZ, cell junction, cell adhesion, signaling protein, nucleotide exchange factor; 1.30A {Homo sapiens} PDB: 3kze_A

Probab=99.05  E-value=1.4e-09  Score=95.76  Aligned_cols=84  Identities=24%  Similarity=0.451  Sum_probs=67.9

Q ss_pred             CeEEEEEEeCCC-CCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhc
Q psy1156         387 GQTMVRVNRRDF-NEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISS  465 (671)
Q Consensus       387 ~~~~V~L~k~~~-~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~  465 (671)
                      ..+.|+|.|.+. ..+|||++......  +. .|++|..|.++|||+++| |++||+|++|||+.+.++++.++..++++
T Consensus         6 ~~~~v~i~k~~~~~~~~Gf~v~~~~~~--~~-~g~~V~~V~~~spA~~aG-L~~GD~Il~vng~~v~~~~~~~l~~~l~~   81 (94)
T 3kzd_A            6 VTHSIHIEKSDTAADTYGFSLSSVEED--GI-RRLYVNSVKETGLASKKG-LKAGDEILEINNRAADALNSSMLKDFLSQ   81 (94)
T ss_dssp             EEEEEEEEC------CCSEEEEEECSS--SS-CEEEEEEECTTSHHHHTT-CCTTCEEEEETTEEGGGCCHHHHHHHHHS
T ss_pred             ceeEEEEEeCCCCcCCcCEEEEecCCC--Cc-CCeEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhC
Confidence            457899988552 35899999875432  22 689999999999999999 99999999999999999999999999984


Q ss_pred             CCCeEEEEEEe
Q psy1156         466 GPLNMDLLISR  476 (671)
Q Consensus       466 ~g~~V~L~V~R  476 (671)
                        ..++|+|..
T Consensus        82 --~~l~ltV~~   90 (94)
T 3kzd_A           82 --PSLGLLVRT   90 (94)
T ss_dssp             --SEEEEEEEE
T ss_pred             --CeEEEEEEe
Confidence              568888765

>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics, KIAA0705 protein; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.05  E-value=1.5e-09  Score=94.96  Aligned_cols=83  Identities=25%  Similarity=0.288  Sum_probs=70.7

Q ss_pred             CCCeEEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHh
Q psy1156         385 QEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIIS  464 (671)
Q Consensus       385 ~~~~~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~  464 (671)
                      +.+.+.|.|.+..  .+|||.|.+..       .|++|..|.++  |+.+| |++||+|++|||++|.+++|.+++.+|+
T Consensus         8 ~~~~~~v~l~~~~--~g~G~~i~~~~-------~Gv~V~~v~~~--a~~aG-L~~GD~I~~vng~~v~~~~~~~~~~~l~   75 (96)
T 1ujv_A            8 QAELMTLTIVKGA--QGFGFTIADSP-------TGQRVKQILDI--QGCPG-LCEGDLIVEINQQNVQNLSHTEVVDILK   75 (96)
T ss_dssp             CCCCEEEEEECCS--SSSSEEEEEET-------TEEEEEEESCG--GGSTT-CCSSCEEEEETTEECSSCCHHHHHHHHH
T ss_pred             CceEEEEEEEeCC--CceeEEEEcCC-------CCEEEEEEecc--cccCC-CCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            4466889998854  89999997543       58999999984  67788 9999999999999999999999999999


Q ss_pred             c--CCCeEEEEEEeCCc
Q psy1156         465 S--GPLNMDLLISRTSL  479 (671)
Q Consensus       465 ~--~g~~V~L~V~R~~~  479 (671)
                      .  .+..|.|+|.|.+.
T Consensus        76 ~~~~g~~v~l~v~R~g~   92 (96)
T 1ujv_A           76 DCPIGSETSLIIHRGSG   92 (96)
T ss_dssp             HSCTTSEEEEEEECCSS
T ss_pred             cCCCCCEEEEEEEECCC
Confidence            6  37899999999764

>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.04  E-value=1.3e-10  Score=101.43  Aligned_cols=82  Identities=20%  Similarity=0.353  Sum_probs=71.8

Q ss_pred             CeEEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhcC
Q psy1156         387 GQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSG  466 (671)
Q Consensus       387 ~~~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~~  466 (671)
                      ..+.|+|.+.....+|||.+.+.        .+++|..|.+++||+ +| |++||+|++|||+.|.++++.+++.+++..
T Consensus         8 ~~~~v~l~~~~~~~~~G~~l~~~--------~~~~V~~V~~~spA~-ag-L~~GD~Il~ing~~v~~~~~~~~~~~~~~~   77 (96)
T 2edv_A            8 VRHTVKIDKDTLLQDYGFHISES--------LPLTVVAVTAGGSAH-GK-LFPGDQILQMNNEPAEDLSWERAVDILREA   77 (96)
T ss_dssp             EEEEEEECCCSSSCSCSBCCCSS--------SSCBCCCBCSSSSST-TT-SCTTCBEEEESSCBSTTCCHHHHHHHHHHC
T ss_pred             ccEEEEEEECCCCCcccEEEecC--------CCeEEEEECCCCchh-hC-CCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence            45788888754345899999861        689999999999996 78 999999999999999999999999999988


Q ss_pred             CCeEEEEEEeCC
Q psy1156         467 PLNMDLLISRTS  478 (671)
Q Consensus       467 g~~V~L~V~R~~  478 (671)
                      +..+.|+|.|..
T Consensus        78 g~~v~l~v~R~~   89 (96)
T 2edv_A           78 EDSLSITVVRCT   89 (96)
T ss_dssp             SSCEEEEEEECC
T ss_pred             CCeEEEEEEECC
Confidence            899999999976

>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding protein; PDZ domain, cytoplasm, membrane, polymorphism, protein binding; 2.70A {Homo sapiens}

Probab=99.04  E-value=5.2e-10  Score=98.72  Aligned_cols=84  Identities=23%  Similarity=0.309  Sum_probs=68.3

Q ss_pred             EEEEEEeCCCCCcccEEEeeecCCCC---CCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhc
Q psy1156         389 TMVRVNRRDFNEELGIYIAKIKNSSE---GNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISS  465 (671)
Q Consensus       389 ~~V~L~k~~~~~~LGfsI~gg~~~~~---g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~  465 (671)
                      +.|.|.+. ..++|||.|.+......   ....+++|..|.+++||+++| |++||+|++|||+.+.++++.+++.+|+.
T Consensus        17 ~~v~l~~~-~~~~~G~~l~~~~~~~~~~~~~~~~~~V~~V~~~spA~~aG-l~~GD~I~~vng~~v~~~~~~~~~~~l~~   94 (104)
T 2z17_A           17 KLVTVEKQ-DNETFGFEIQSYRPQNQNACSSEMFTLICKIQEDSPAHCAG-LQAGDVLANINGVSTEGFTYKQVVDLIRS   94 (104)
T ss_dssp             CEEEEECC-TTSCCSEEEEECCCCCCSSSCCSCCEEEEEECTTSHHHHHT-CCTTCBCCEETTEECTTCCHHHHHHHHHH
T ss_pred             eEEEEEeC-CCCCccEEEEeeecccCCcccCCCCeEEEEECCCChHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHHHh
Confidence            46777774 35799999997321110   112689999999999999999 99999999999999999999999999997


Q ss_pred             CCCeEEEEE
Q psy1156         466 GPLNMDLLI  474 (671)
Q Consensus       466 ~g~~V~L~V  474 (671)
                      .++.|.|+|
T Consensus        95 ~~~~v~l~v  103 (104)
T 2z17_A           95 SGNLLTIET  103 (104)
T ss_dssp             TTTEEEEEC
T ss_pred             CCCcEEEEE
Confidence            777777765

>3qik_A Phosphatidylinositol 3,4,5-trisphosphate-dependen exchanger 1 protein; PDZ domain, structural genomics consortium, SGC, hydrolase R; 2.29A {Homo sapiens}

Probab=99.04  E-value=9.3e-10  Score=98.06  Aligned_cols=79  Identities=19%  Similarity=0.292  Sum_probs=66.7

Q ss_pred             eEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhc--CC
Q psy1156         578 TIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTI--KN  655 (671)
Q Consensus       578 ~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~s--g~  655 (671)
                      .+.|....  .++||.+....      .+++|..|.++|||+++| |++||+|++|||.+|...++++++..++.+  ..
T Consensus        20 ~l~l~~~~--~g~G~~l~~~~------~~~~I~~V~~gSpA~~AG-L~~GD~I~~Ing~~v~~~s~~dv~~~i~~~~~~g   90 (101)
T 3qik_A           20 RLLILPQE--EDYGFDIEEKN------KAVVVKSVQRGSLAEVAG-LQVGRKIYSINEDLVFLRPFSEVESILNQSFCSR   90 (101)
T ss_dssp             EEEECCCS--SSSSEEEEEET------TEEEEEEECTTSHHHHHT-CCTTCBEEEETTEESTTSCHHHHHHHHHHHHHTT
T ss_pred             eEEEEeCC--CcccEEEEccC------CCeEEEEECCCCHHHHcC-CCCCCEEEEECCEEcCcCCHHHHHHHHHHhhccC
Confidence            45565554  78999997632      368999999999999999 999999999999999878999999999873  34


Q ss_pred             CcEEEEEEeC
Q psy1156         656 GSISLHICRR  665 (671)
Q Consensus       656 ~~VtL~V~Rr  665 (671)
                      +.|.|+|+.+
T Consensus        91 ~~v~LLV~~~  100 (101)
T 3qik_A           91 RPLRLLVATK  100 (101)
T ss_dssp             CCEEEEEECC
T ss_pred             CeEEEEEecC
Confidence            7899999865

>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein; structural protein-hydrolase complex, peptide binding protei; NMR {Homo sapiens}

Probab=98.61  E-value=2.1e-11  Score=110.03  Aligned_cols=84  Identities=29%  Similarity=0.413  Sum_probs=72.6

Q ss_pred             CCeEEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhh-cCCCCCCCEEEccCCeeccCCCHHHHHHHHh
Q psy1156         386 EGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEK-EGCLELGDEIISVNGQRLRGLTMTQAKSIIS  464 (671)
Q Consensus       386 ~~~~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~r-aG~L~~GD~IlaVNG~~V~~~s~~~av~~L~  464 (671)
                      .+++.|.|.+. ..++|||.+.++.+..    .|++|..|.++|||++ +| |++||+|++|||++|.+.++.+++.+++
T Consensus        26 ~~~~~v~l~k~-~~~glG~~l~~g~~~~----~gv~V~~V~~~spA~~~aG-L~~GD~Il~ING~~v~~~~~~~~~~~l~   99 (112)
T 2lob_A           26 QGIRKVLLLKE-DHEGLGISITGGKEHG----VPILISEIHPGQPADRCGG-LHVGDAILAVNGVNLRDTKHKEAVTILS   99 (112)
Confidence            46678888875 3689999999876543    6899999999999999 78 9999999999999999999999999998


Q ss_pred             cCCCeEEEEEE
Q psy1156         465 SGPLNMDLLIS  475 (671)
Q Consensus       465 ~~g~~V~L~V~  475 (671)
                      ..++.+.|+|.
T Consensus       100 ~~~~~v~l~V~  110 (112)
T 2lob_A          100 QQRGEIEFEVV  110 (112)
Confidence            77777888774

>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction, membrane, phosphorylati domain, protein binding; 1.70A {Homo sapiens} PDB: 2jwe_A 2osg_A

Probab=99.04  E-value=1.4e-09  Score=90.50  Aligned_cols=75  Identities=25%  Similarity=0.493  Sum_probs=65.5

Q ss_pred             EEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhcCCCeEEE
Q psy1156         393 VNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDL  472 (671)
Q Consensus       393 L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~~g~~V~L  472 (671)
                      .........|||.+.          .|++|..|.++|||+++|.|++||+|++|||+++.++++.++..+++..+..+.|
T Consensus         6 ~~~~~~~~~~g~~~~----------~gv~V~~v~~~s~A~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l   75 (81)
T 2rcz_A            6 LVKSRKNEEYGLRLA----------SHIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIERSKGKLKM   75 (81)
T ss_dssp             EECCSTTCCCCEEEE----------EEEEEEEECTTSHHHHHSSCCTTCEEEEETTEECTTCCHHHHHHHHHTSTTEEEE
T ss_pred             EEECCCCCCCCEEEe----------CCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCeEEE
Confidence            334456789999887          4799999999999999999999999999999999999999999999877778999


Q ss_pred             EEEeC
Q psy1156         473 LISRT  477 (671)
Q Consensus       473 ~V~R~  477 (671)
                      +|.|.
T Consensus        76 ~v~R~   80 (81)
T 2rcz_A           76 VVQRD   80 (81)
T ss_dssp             EEEC-
T ss_pred             EEEeC
Confidence            99875

>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}

Probab=99.03  E-value=6.4e-10  Score=123.31  Aligned_cols=81  Identities=30%  Similarity=0.640  Sum_probs=72.2

Q ss_pred             eeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhc-CC
Q psy1156         577 HTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTI-KN  655 (671)
Q Consensus       577 ~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~s-g~  655 (671)
                      +.|.|.++   .+|||.+.|+.+     .||||..|.+||||+++| |++||+|++|||++|.++++.+++.+|+.. ..
T Consensus         3 r~V~l~k~---~~lG~~i~gg~~-----~Gi~V~~V~~gspA~~aG-L~~GD~Il~VNG~~v~~~t~~e~~~~L~~~~~g   73 (468)
T 3shw_A            3 KLVKFRKG---DSVGLRLAGGND-----VGIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDFTNIIREEAVLFLLDLPKG   73 (468)
T ss_dssp             EEEEEECC---SSCCEEEEEETT-----TEEEEEEECSSSHHHHTT-CCTTEEEEEETTEECTTCCHHHHHHHHHHSCTT
T ss_pred             eEEEEecC---CccceEEEccCc-----CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhcCCC
Confidence            56888875   689999998865     489999999999999999 999999999999999999999999999983 24


Q ss_pred             CcEEEEEEeCC
Q psy1156         656 GSISLHICRRL  666 (671)
Q Consensus       656 ~~VtL~V~Rr~  666 (671)
                      +.|+|+|.|+.
T Consensus        74 ~~v~L~V~r~g   84 (468)
T 3shw_A           74 EEVTILAQKKK   84 (468)
T ss_dssp             SEEEEEEEECH
T ss_pred             CEEEEEEEECC
Confidence            78999999864

>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.02  E-value=1.5e-10  Score=106.02  Aligned_cols=90  Identities=26%  Similarity=0.421  Sum_probs=73.9

Q ss_pred             CeEEEEEEeCCCCCcccEEEeeecCCC-------------CC-----------CcCcEEEEEEcCCChhhhcCCCCCCCE
Q psy1156         387 GQTMVRVNRRDFNEELGIYIAKIKNSS-------------EG-----------NIGGFVVAHIVSGGLAEKEGCLELGDE  442 (671)
Q Consensus       387 ~~~~V~L~k~~~~~~LGfsI~gg~~~~-------------~g-----------~~~GI~Vs~V~pGspA~raG~L~~GD~  442 (671)
                      ..+.|+|.|..  .+|||+|.+.....             .|           ...+++|..|.+++||+++| |++||+
T Consensus         8 ~~r~v~l~r~~--~g~Gf~l~~~t~y~~~~~~~~~~~~~~~G~~~G~~~~~~~~~~gv~V~~V~~~spA~~aG-L~~GD~   84 (126)
T 2yuy_A            8 GPKTVTLKRTS--QGFGFTLRHFIVYPPESAIQFSYKDEENGNRGGKQRNRLEPMDTIFVKQVKEGGPAFEAG-LCTGDR   84 (126)
T ss_dssp             SCCCEEEECCS--SSCSCCBCCCCCCCCSSCCCSCSSSCCCCSCCCTTSCCCCCCCCCCBCCCCSSSHHHHHT-CCSSCC
T ss_pred             CCEEEEEEECC--CCcceeecCccccCCHHHHHHHHHhhcCcceeceeeecccCCCCEEEEEECCCChHHHcC-CCCCCE
Confidence            45678998854  78999998521000             00           11569999999999999999 999999


Q ss_pred             EEccCCeeccCCCHHHHHHHHhcCCCeEEEEEEeCCc
Q psy1156         443 IISVNGQRLRGLTMTQAKSIISSGPLNMDLLISRTSL  479 (671)
Q Consensus       443 IlaVNG~~V~~~s~~~av~~L~~~g~~V~L~V~R~~~  479 (671)
                      |++|||+.|.++++.+++.+|+..+..|.|+|.|.+.
T Consensus        85 I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~v~r~~~  121 (126)
T 2yuy_A           85 IIKVNGESVIGKTYSQVIALIQNSDTTLELSVMPKDS  121 (126)
T ss_dssp             CCEETTEECSSCCHHHHHHHHHTCTTEEEEECCCCCC
T ss_pred             EEEECCEECCCCCHHHHHHHHHcCCCEEEEEEEECCC
Confidence            9999999999999999999999888999999988654

>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.01  E-value=3.9e-10  Score=99.03  Aligned_cols=82  Identities=24%  Similarity=0.310  Sum_probs=70.6

Q ss_pred             CeEEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhcC
Q psy1156         387 GQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSG  466 (671)
Q Consensus       387 ~~~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~~  466 (671)
                      ..+.|.|.+..  .+|||.+.+.        .+++|..|.+++||+++| |++||+|++|||+.+.++++.++..+++..
T Consensus        15 ~~~~v~l~~~~--~g~G~~~~~~--------~~~~V~~V~~~spA~~aG-L~~GD~I~~vng~~v~~~~~~~~~~~l~~~   83 (100)
T 1whd_A           15 EKLQITIRRGK--DGFGFTICCD--------SPVRVQAVDSGGPAERAG-LQQLDTVLQLNERPVEHWKCVELAHEIRSC   83 (100)
T ss_dssp             EEEEEEEECCS--SSSSCBCCCS--------SSCBCCBCCTTSHHHHHT-CCSSCEEEEETTEECTTCCHHHHHHHHHHC
T ss_pred             ceEEEEEECCC--CeeeEEEeCC--------CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence            44667777643  7899988753        579999999999999999 999999999999999999999999999977


Q ss_pred             CCeEEEEEEeCCc
Q psy1156         467 PLNMDLLISRTSL  479 (671)
Q Consensus       467 g~~V~L~V~R~~~  479 (671)
                      +..|.|+|.|...
T Consensus        84 ~~~v~l~v~R~~~   96 (100)
T 1whd_A           84 PSEIILLVWRVSG   96 (100)
T ss_dssp             SSEEEEEEEECCS
T ss_pred             CCeEEEEEEECCC
Confidence            7789999998653

>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A

Probab=99.01  E-value=9.5e-10  Score=119.47  Aligned_cols=83  Identities=29%  Similarity=0.615  Sum_probs=72.0

Q ss_pred             ceeeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHh-c
Q psy1156         575 TFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKT-I  653 (671)
Q Consensus       575 ~~~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~-s  653 (671)
                      ..+.|.+.++   .+|||++.++.+     .||+|..|.+||||+++| |++||+|++|||.+|.++++++++.+|+. .
T Consensus         9 ~~~~v~~~k~---~~lG~~i~gg~~-----~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~~~~~~e~~~~l~~~~   79 (391)
T 3tsz_A            9 SMKLVKFRKG---DSVGLRLAGGND-----VGIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDFTNIIREEAVLFLLDLP   79 (391)
T ss_dssp             CEEEEEEECC---SSCCEEEEEETT-----TEEEEEEECTTCHHHHTT-CCTTEEEEEETTEECTTCCHHHHHHHHHHSC
T ss_pred             CcEEEEeecC---CceeEEEEecCC-----CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhhc
Confidence            3456777776   469999998765     489999999999999999 99999999999999999999999999996 3


Q ss_pred             CCCcEEEEEEeCC
Q psy1156         654 KNGSISLHICRRL  666 (671)
Q Consensus       654 g~~~VtL~V~Rr~  666 (671)
                      +...|+|+|.|+.
T Consensus        80 ~g~~v~l~v~r~~   92 (391)
T 3tsz_A           80 KGEEVTILAQKKK   92 (391)
T ss_dssp             TTSEEEEEEEECH
T ss_pred             CCCeEEEEEeeCC
Confidence            3468999999874

>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation, cell projection, disease mutation, membrane, phosphoprotein, polymorphism; NMR {Homo sapiens}

Probab=99.01  E-value=3.9e-10  Score=113.22  Aligned_cols=83  Identities=27%  Similarity=0.429  Sum_probs=72.1

Q ss_pred             ceeeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcC
Q psy1156         575 TFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIK  654 (671)
Q Consensus       575 ~~~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg  654 (671)
                      ..+.|+|.++.  .+|||.|.++.+.    .|++|..|.++|+|+++| |++||+|++|||++|.++++.+++.+|+..+
T Consensus         9 ~~r~v~l~k~~--~glG~~l~~~~~~----~gv~V~~V~~gSpA~~aG-L~~GD~Il~VNG~~V~~~s~~dl~~~l~~~g   81 (216)
T 2krg_A            9 RPRLCTMKKGP--SGYGFNLHSDKSK----PGQFIRSVDPDSPAEASG-LRAQDRIVEVNGVCMEGKQHGDVVSAIRAGG   81 (216)
T ss_dssp             CCEEEEEECCS--SSSCEEECCCSSS----CSCBEEEECTTSHHHHHT-CCTTCBCCEETTEECTTCCTHHHHHHHHHHC
T ss_pred             ceEEEEEEeCC--CCceEEEEecCCC----CCeEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhcC
Confidence            34678888876  7899999877643    389999999999999999 9999999999999999999999999998874


Q ss_pred             CCcE-EEEEEeC
Q psy1156         655 NGSI-SLHICRR  665 (671)
Q Consensus       655 ~~~V-tL~V~Rr  665 (671)
                       ..| .|+|.|+
T Consensus        82 -~~v~~l~V~R~   92 (216)
T 2krg_A           82 -DETKLLVVDRE   92 (216)
T ss_dssp             -SEEEEEECCHH
T ss_pred             -CeEEEEEEEEC
Confidence             678 8888664

>2eaq_A LIM domain only protein 7; conserved hypothetical protein, structural genomics, NPPSFA; 1.46A {Homo sapiens}

Probab=99.00  E-value=1.6e-09  Score=92.70  Aligned_cols=82  Identities=20%  Similarity=0.248  Sum_probs=66.9

Q ss_pred             EEEEEEeC-CCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhc--
Q psy1156         389 TMVRVNRR-DFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISS--  465 (671)
Q Consensus       389 ~~V~L~k~-~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~--  465 (671)
                      +.+.|.+. .....|||.+....       .|++|..|.++|||+++| |++||+|++|||+.+.+.++.++..++..  
T Consensus         5 ~~~~~~~~~~~~~~lG~~~~~~~-------~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~   76 (90)
T 2eaq_A            5 MRISINQTPGKSLDFGFTIKWDI-------PGIFVASVEAGSPAEFSQ-LQVDDEIIAINNTKFSYNDSKEWEEAMAKAQ   76 (90)
T ss_dssp             EEEEEECCTTCSSCCSEEEEEET-------TEEEEEEECTTSHHHHTT-CCTTCEEEEETTEECCTTCHHHHHHHHHHHH
T ss_pred             eEEEEEecCCCCCcccEEEEecC-------CCEEEEEECCCChHHHcC-CCCCCEEEEECCEEccCCCHHHHHHHHHhcC
Confidence            34555542 22347999987532       689999999999999999 99999999999999987888998888873  


Q ss_pred             CCCeEEEEEEeCC
Q psy1156         466 GPLNMDLLISRTS  478 (671)
Q Consensus       466 ~g~~V~L~V~R~~  478 (671)
                      .+..+.|+|.|.+
T Consensus        77 ~g~~v~l~v~R~g   89 (90)
T 2eaq_A           77 ETGHLVMDVRRYG   89 (90)
T ss_dssp             HHTEEEEEEEEEC
T ss_pred             CCCEEEEEEEeCC
Confidence            5788999998864

>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function; 1.80A {Homo sapiens} PDB: 3ch8_A

Probab=99.00  E-value=1.2e-09  Score=106.07  Aligned_cols=75  Identities=29%  Similarity=0.360  Sum_probs=66.2

Q ss_pred             CcccEEEeeecCC---CC-CCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhcCCCeEEEEEE
Q psy1156         400 EELGIYIAKIKNS---SE-GNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLIS  475 (671)
Q Consensus       400 ~~LGfsI~gg~~~---~~-g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~~g~~V~L~V~  475 (671)
                      .+|||+|.|+.+.   +. ....|++|..|.++|||++ | |++||+|++|||+.|.++++.+++.+++..+..|.|+|.
T Consensus         2 ~g~Gf~i~gg~~~~~~~~~~~~~g~~V~~v~~~spA~~-g-l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~   79 (195)
T 2qbw_A            2 PELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK-L-LQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIV   79 (195)
T ss_dssp             CCSSEEEEECTTSCCCSSCTTCCSEEEEEECTTSTTTT-T-CCTTCEEEEETTEECTTCCHHHHHHHHHHCCSEEEEEEE
T ss_pred             CcccEEEECCcCCCCCccccCCCCEEEEEECCCChHHh-C-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEE
Confidence            6899999998642   11 1127999999999999999 8 999999999999999999999999999988889999999


Q ss_pred             e
Q psy1156         476 R  476 (671)
Q Consensus       476 R  476 (671)
                      |
T Consensus        80 r   80 (195)
T 2qbw_A           80 R   80 (195)
T ss_dssp             E
T ss_pred             E
Confidence            9

>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.99  E-value=5.6e-09  Score=95.52  Aligned_cols=89  Identities=21%  Similarity=0.294  Sum_probs=73.4

Q ss_pred             CeEEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhcC
Q psy1156         387 GQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSG  466 (671)
Q Consensus       387 ~~~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~~  466 (671)
                      ..+.+.+... ....|||.+.++....    .|++|..|.+++||+++| |++||+|++|||+.+.++++.+++..++. 
T Consensus        20 ~~~~v~v~~~-~~~~lG~~~~~~~~~~----~gv~V~~V~~~spA~~aG-L~~GD~I~~vng~~v~~~~~~~~~~~~~~-   92 (128)
T 1uf1_A           20 DEKKVNLVLG-DGRSLGLTIRGGAEYG----LGIYITGVDPGSEAEGSG-LKVGDQILEVNGRSFLNILHDEAVRLLKS-   92 (128)
T ss_dssp             SEEEEEEECC-SSCCCCEEEECCTTTT----CCCEEEEECTTCHHHHHT-CCTTCEEEEETTEECSSCCHHHHHHHHTT-
T ss_pred             cEEEEEEEEC-CCCccCEEEECcccCC----CCEEEEEECCCCHHHHCC-CCCCCEEEEECCEECCCCCHHHHHHHHhc-
Confidence            3466776653 2478999999764332    589999999999999999 99999999999999999999888888885 


Q ss_pred             CCeEEEEEEeCCcccc
Q psy1156         467 PLNMDLLISRTSLKKS  482 (671)
Q Consensus       467 g~~V~L~V~R~~~~~~  482 (671)
                      +..+.|+|.|.+....
T Consensus        93 ~~~v~l~v~R~g~~~~  108 (128)
T 1uf1_A           93 SRHLILTVKDVGRLPH  108 (128)
T ss_dssp             CSEEEEEEECCSCCSS
T ss_pred             CCeEEEEEEECCcccc
Confidence            5699999999877543

>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A

Probab=98.98  E-value=2.7e-09  Score=101.69  Aligned_cols=83  Identities=25%  Similarity=0.408  Sum_probs=70.7

Q ss_pred             ceeeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcC
Q psy1156         575 TFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIK  654 (671)
Q Consensus       575 ~~~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg  654 (671)
                      ..+.|.|.+.. ...|||.+....      .|++|..|.++|||+++| |++||+|++|||+++.++++..+..+++..+
T Consensus         4 ~~r~v~l~k~~-~~~lG~~~~~~~------~g~~V~~v~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~~~~~~   75 (166)
T 1w9e_A            4 DPREVILCKDQ-DGKIGLRLKSID------NGIFVQLVQANSPASLVG-LRFGDQVLQINGENCAGWSSDKAHKVLKQAF   75 (166)
T ss_dssp             CCEEEEEECCT-TSCCSEEEEEET------TEEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHHHCC
T ss_pred             CCEEEEEEeCC-CCcEeEEEEeCC------CCEEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhcCC
Confidence            34688998875 478999998643      489999999999999999 9999999999999999998878888888765


Q ss_pred             CCcEEEEEEeC
Q psy1156         655 NGSISLHICRR  665 (671)
Q Consensus       655 ~~~VtL~V~Rr  665 (671)
                      ...|.|+|.|.
T Consensus        76 ~~~v~l~vr~~   86 (166)
T 1w9e_A           76 GEKITMTIRDR   86 (166)
T ss_dssp             SSEEEEEEECC
T ss_pred             CCEEEEEEEcC
Confidence            46899999443

>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}

Probab=98.98  E-value=1.3e-09  Score=120.93  Aligned_cols=83  Identities=23%  Similarity=0.357  Sum_probs=75.0

Q ss_pred             eEEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhc--
Q psy1156         388 QTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISS--  465 (671)
Q Consensus       388 ~~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~--  465 (671)
                      +++|.|.|.   ++|||.+.++..      .|++|..|.+||||+++| |++||+|++|||+.|.++++.+++.+|+.  
T Consensus         2 ~r~V~l~k~---~~lG~~i~gg~~------~Gi~V~~V~~gspA~~aG-L~~GD~Il~VNG~~v~~~t~~e~~~~L~~~~   71 (468)
T 3shw_A            2 MKLVKFRKG---DSVGLRLAGGND------VGIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDFTNIIREEAVLFLLDLP   71 (468)
T ss_dssp             EEEEEEECC---SSCCEEEEEETT------TEEEEEEECSSSHHHHTT-CCTTEEEEEETTEECTTCCHHHHHHHHHHSC
T ss_pred             ceEEEEecC---CccceEEEccCc------CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhcC
Confidence            578888773   799999998764      689999999999999999 99999999999999999999999999996  


Q ss_pred             CCCeEEEEEEeCCcc
Q psy1156         466 GPLNMDLLISRTSLK  480 (671)
Q Consensus       466 ~g~~V~L~V~R~~~~  480 (671)
                      .+..|.|+|.|.+..
T Consensus        72 ~g~~v~L~V~r~g~~   86 (468)
T 3shw_A           72 KGEEVTILAQKKKDV   86 (468)
T ss_dssp             TTSEEEEEEEECHHH
T ss_pred             CCCEEEEEEEECCcc
Confidence            788999999997653

>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ domain, cytoskeleton, actin binding, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1

Probab=98.97  E-value=3.8e-10  Score=99.49  Aligned_cols=79  Identities=20%  Similarity=0.274  Sum_probs=70.3

Q ss_pred             CCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhcCCCeEEEEEEeCC
Q psy1156         399 NEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISRTS  478 (671)
Q Consensus       399 ~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~~g~~V~L~V~R~~  478 (671)
                      ..+|||.+.++.+..    .+++|..|.+++||+++| |++||+|++|||+.+.++++.++..+|+..+..+.|+|.|.+
T Consensus        14 ~~~lG~~l~~g~~~~----~~~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~v~R~g   88 (103)
T 1v5l_A           14 PAPWGFRLSGGIDFN----QPLVITRITPGSKAAAAN-LCPGDVILAIDGFGTESMTHADAQDRIKAASYQLCLKIDRAE   88 (103)
T ss_dssp             SSCCSBCCEEETTTT----EEEECSCBCTTSTTGGGT-CCTTCBEEEETTEECSSCCHHHHHHHHTTCCSEEECEECCCT
T ss_pred             CCCcCEEEeccccCC----CCeEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEEECC
Confidence            379999999887543    589999999999999999 999999999999999999999999999977889999999987


Q ss_pred             cccc
Q psy1156         479 LKKS  482 (671)
Q Consensus       479 ~~~~  482 (671)
                      ....
T Consensus        89 ~~~~   92 (103)
T 1v5l_A           89 TRLW   92 (103)
T ss_dssp             TTTS
T ss_pred             eEcc
Confidence            6433

>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS, nitric oxide synthase, oxidoreductase; NMR {Rattus norvegicus} SCOP: b.36.1.1

Probab=98.97  E-value=1.8e-09  Score=98.50  Aligned_cols=91  Identities=23%  Similarity=0.358  Sum_probs=76.8

Q ss_pred             CCCeEEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHh
Q psy1156         385 QEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIIS  464 (671)
Q Consensus       385 ~~~~~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~  464 (671)
                      ...++.|.|.+.. ..+|||.+.+..+.     .+++|..|.++|||+++|.|++||+|++|||+.+.++++.++..+|+
T Consensus         6 ~~~~~~v~l~~~~-~~glG~~~~~~~~~-----~~~~V~~V~~~spA~~aGll~~GD~I~~ing~~v~~~~~~~~~~~l~   79 (127)
T 1b8q_A            6 EPNVISVRLFKRK-VGGLGFLVKERVSK-----PPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLR   79 (127)
T ss_dssp             CCCSEEEEEECTT-TSCCSCCEEECTTS-----SCEEECCCSSSSSHHHHSSCCTTTCCCEETTEECSSSCHHHHHHHHH
T ss_pred             CCceEEEEEEeCC-CCcEeEEEEecCCC-----CCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            4467889998853 57999999876532     68999999999999999934999999999999999999999999998


Q ss_pred             c-CCCeEEEEEEeCCccc
Q psy1156         465 S-GPLNMDLLISRTSLKK  481 (671)
Q Consensus       465 ~-~g~~V~L~V~R~~~~~  481 (671)
                      . .+..+.|+|.|.+...
T Consensus        80 ~~~g~~v~l~v~R~g~~~   97 (127)
T 1b8q_A           80 GIASETHVVLILRGPEGF   97 (127)
T ss_dssp             SCCSSCEEEEEECCCCSE
T ss_pred             hCCCCeEEEEEEeCCceE
Confidence            5 4578999999987643

>2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ domain, protein, acetylation, cell projection, disease mutation, membrane; NMR {Homo sapiens}

Probab=98.97  E-value=2.9e-09  Score=97.04  Aligned_cols=86  Identities=21%  Similarity=0.278  Sum_probs=73.1

Q ss_pred             CCeEEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhc
Q psy1156         386 EGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISS  465 (671)
Q Consensus       386 ~~~~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~  465 (671)
                      ...+.|+|.+..  .+|||.+.++...     .|++|..|.++|||+++| |++||+|++|||+.+.++++.++..+|+.
T Consensus         8 ~~~r~v~l~~~~--~g~G~~l~~~~~~-----~gv~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~   79 (128)
T 2kjd_A            8 LRPRLCTMKKGP--SGYGFNLHSDKSK-----PGQFIRSVDPDSPAEASG-LRAQDRIVEVNGVCMEGKQHGDVVSAIRA   79 (128)
T ss_dssp             CCCEEEEEECCS--SSCCEEEEECSSS-----CSEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHT
T ss_pred             CCcEEEEEecCC--CcccEEEEecCCC-----CCEEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHh
Confidence            356788988854  7899999976543     689999999999999999 99999999999999999999999999986


Q ss_pred             C-CCeEEEEEEeCCc
Q psy1156         466 G-PLNMDLLISRTSL  479 (671)
Q Consensus       466 ~-g~~V~L~V~R~~~  479 (671)
                      . +..+.|+|.|.+.
T Consensus        80 ~~~~~~~l~v~R~g~   94 (128)
T 2kjd_A           80 GGDETKLLVVDRETD   94 (128)
T ss_dssp             TCSEEEEEEECHHHH
T ss_pred             CCCCEEEEEEEeCCc
Confidence            5 4456788888654

>2d8i_A T-cell lymphoma invasion and metastasis 1 variant; PDZ domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.97  E-value=1.3e-09  Score=98.73  Aligned_cols=88  Identities=23%  Similarity=0.420  Sum_probs=72.8

Q ss_pred             CCeEEEEEEeCCCC-CcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHh
Q psy1156         386 EGQTMVRVNRRDFN-EELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIIS  464 (671)
Q Consensus       386 ~~~~~V~L~k~~~~-~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~  464 (671)
                      ..++.|.|.+.... .+|||+|.+....  +. .+++|..|.+++||+++| |++||+|++|||+.+..+++.++..+++
T Consensus        14 ~~~~~v~l~k~~~~~~~~G~~v~~~~~~--~~-~gv~V~~V~~~spA~~aG-L~~GD~Il~Ing~~v~~~~~~~~~~~l~   89 (114)
T 2d8i_A           14 KVTQSIHIEKSDTAADTYGFSLSSVEED--GI-RRLYVNSVKETGLASKKG-LKAGDEILEINNRAADALNSSMLKDFLS   89 (114)
T ss_dssp             CEEEEEEEECSCTTTCCCCCEEEEEEET--TE-EEEEEEECCTTSSHHHHT-CCTTCCEEEESSCBGGGCCHHHHHHHHT
T ss_pred             CceEEEEEEeCCCCccccCEEEEecCcC--Cc-CCEEEEEeCCCCHHHHcC-CCCCCEEEEECCEECCCcCHHHHHHHHh
Confidence            46688999885422 3799999875432  11 579999999999999999 9999999999999999999999999998


Q ss_pred             cCCCeEEEEEEeCCc
Q psy1156         465 SGPLNMDLLISRTSL  479 (671)
Q Consensus       465 ~~g~~V~L~V~R~~~  479 (671)
                      .  ..+.|+|.|...
T Consensus        90 ~--~~v~l~v~R~p~  102 (114)
T 2d8i_A           90 Q--PSLGLLVRTYPE  102 (114)
T ss_dssp             S--SEEEEEEEECCC
T ss_pred             C--CcEEEEEEECCC
Confidence            4  489999998654

>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A

Probab=98.90  E-value=3.9e-09  Score=114.67  Aligned_cols=85  Identities=22%  Similarity=0.348  Sum_probs=74.9

Q ss_pred             CCeEEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHh-
Q psy1156         386 EGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIIS-  464 (671)
Q Consensus       386 ~~~~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~-  464 (671)
                      ..++.|.+.+.   ++|||++.++.+      .|++|..|.+||||+++| |++||+|++|||.++.++++++++.+|+ 
T Consensus         8 ~~~~~v~~~k~---~~lG~~i~gg~~------~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~~~~~~e~~~~l~~   77 (391)
T 3tsz_A            8 PSMKLVKFRKG---DSVGLRLAGGND------VGIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDFTNIIREEAVLFLLD   77 (391)
T ss_dssp             -CEEEEEEECC---SSCCEEEEEETT------TEEEEEEECTTCHHHHTT-CCTTEEEEEETTEECTTCCHHHHHHHHHH
T ss_pred             CCcEEEEeecC---CceeEEEEecCC------CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHh
Confidence            35677888774   479999998764      689999999999999999 9999999999999999999999999998 


Q ss_pred             -cCCCeEEEEEEeCCcc
Q psy1156         465 -SGPLNMDLLISRTSLK  480 (671)
Q Consensus       465 -~~g~~V~L~V~R~~~~  480 (671)
                       ..+..|.|+|.|.+..
T Consensus        78 ~~~g~~v~l~v~r~~~~   94 (391)
T 3tsz_A           78 LPKGEEVTILAQKKKDV   94 (391)
T ss_dssp             SCTTSEEEEEEEECHHH
T ss_pred             hcCCCeEEEEEeeCCcc
Confidence             4788999999997653

>2yub_A LIMK-2, LIM domain kinase 2; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.90  E-value=7.5e-09  Score=94.24  Aligned_cols=90  Identities=20%  Similarity=0.241  Sum_probs=68.2

Q ss_pred             eeEEEeeCCC--CCcccEEEecCCCCCCCCcceeEEEeCC--CCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHh
Q psy1156         577 HTIVFEKGPG--KKGLGFTIVGGKDSPRGAIGIFIKSILD--NGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKT  652 (671)
Q Consensus       577 ~~V~L~K~~g--~~~LGfsL~Gg~ds~~g~~GVfIssV~p--gSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~  652 (671)
                      +.|+|...+.  .+.+||.|...........|++|..|.+  ++||+++| |++||+|++|||++|.+++|.++..+|+.
T Consensus        14 ~~v~l~~~~~~~~g~~G~~v~l~~~~~~~~~gv~V~~V~~~~~spA~~aG-L~~GD~Il~Vng~~v~~~~~~dl~~~l~~   92 (118)
T 2yub_A           14 YSVTLISMPATTECRRGFSVTVESASSNYATTVQVKEVNRMHISPNNRNA-IHPGDRILEINGTPVRTLRVEEVEDAIKQ   92 (118)
T ss_dssp             CEEEEEEECSCSSSSCSSEEEEECTTSSSCCEEEEEECCTTTSCTTHHHH-CCTTCCEEEESSSBTTTSCHHHHHHHHHC
T ss_pred             ceeEEeccCCccCCCceEEEEeccccccCCCcEEEEEecCCCCChHHHcC-CCCCCEEEEECCEECCCcCHHHHHHHHHh
Confidence            3555554221  2456666652221111235899999999  99999999 99999999999999999999999999998


Q ss_pred             cCCCcEEEEEEeCCCC
Q psy1156         653 IKNGSISLHICRRLKS  668 (671)
Q Consensus       653 sg~~~VtL~V~Rr~~~  668 (671)
                      . ...|.|+|.|+...
T Consensus        93 ~-g~~v~l~v~R~g~~  107 (118)
T 2yub_A           93 T-SQTLQLLIEHDPVP  107 (118)
T ss_dssp             C-SSCEEEEEEECSSC
T ss_pred             C-CCEEEEEEEECCEE
Confidence            7 47899999987653

>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A

Probab=98.87  E-value=1.9e-09  Score=116.92  Aligned_cols=91  Identities=24%  Similarity=0.370  Sum_probs=74.8

Q ss_pred             ceeeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcC
Q psy1156         575 TFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIK  654 (671)
Q Consensus       575 ~~~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg  654 (671)
                      ..+.|.+.+..+ ++|||.|.+.... ....|++|..|.++|||+++|+|++||+|++|||++|.+++|.+++.+|+..+
T Consensus       204 ~~~~V~i~k~~g-e~lG~~i~~~~~g-~~~~g~~V~~V~~gspA~~aG~L~~GD~Il~VnG~~v~~~~~~~~~~~l~~~~  281 (388)
T 3suz_A          204 NCKELQLEKHKG-EILGVVVVESGWG-SILPTVILANMMNGGPAARSGKLSIGDQIMSINGTSLVGLPLATCQGIIKGLK  281 (388)
T ss_dssp             CCEEEEECCCSS-CCCCCCCBCC----CCSCCCBCCCCCCSSHHHHTCCCCTTCEEEEETTEECSSCCSTTHHHHTTTCT
T ss_pred             cceEEEEECCCC-CceeEEEEecCCC-CcCCCEEEEeeCCCCHHHHcCCCCCCCEEEEECCEEccCCCHHHHHHHHHhcc
Confidence            346888988753 7899999874321 11346999999999999999999999999999999999999999999999873


Q ss_pred             -CCcEEEEEEeCCC
Q psy1156         655 -NGSISLHICRRLK  667 (671)
Q Consensus       655 -~~~VtL~V~Rr~~  667 (671)
                       ...|.|+|.|...
T Consensus       282 ~~~~v~l~v~r~~~  295 (388)
T 3suz_A          282 NQTQVKLNIVSCPP  295 (388)
T ss_dssp             TCSCEEEEEEECCS
T ss_pred             CCCccccccccccc
Confidence             3459999988764

>1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain, intracellular signaling cascade, signal transduction; NMR {Mus musculus} SCOP: b.36.1.1

Probab=98.87  E-value=1.2e-09  Score=98.48  Aligned_cols=80  Identities=16%  Similarity=0.177  Sum_probs=68.0

Q ss_pred             eEEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhcCC
Q psy1156         388 QTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGP  467 (671)
Q Consensus       388 ~~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~~g  467 (671)
                      .+.|.|.+.  ..+|||.+.+.        .+++|..|.+++||+++| |++||+|++|||+.|.++++.+++.+|+..+
T Consensus        16 ~r~v~l~~~--~~~~G~~l~~~--------~~v~V~~V~~~spA~~aG-L~~GD~Il~InG~~v~~~~~~d~~~~i~~~~   84 (111)
T 1vae_A           16 PRGIHFTVE--EGDLGFTLRGN--------TPVQVHFLDPHCSASLAG-AKEGDYIVSIQGVDCKWLTVSEVMKLLKSFG   84 (111)
T ss_dssp             CCCCCEECC--SSCCSCCEESS--------SSCEECCCCTTSSHHHHH-CCTTCEEEEETTEECSSCCHHHHHHHHHHTT
T ss_pred             CeEEEEEcC--CCcccEEEeCC--------CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence            356778774  48999998643        578999999999999999 9999999999999999999999999998654


Q ss_pred             C-eEEEEEEeCC
Q psy1156         468 L-NMDLLISRTS  478 (671)
Q Consensus       468 ~-~V~L~V~R~~  478 (671)
                      + .+.|+|.+..
T Consensus        85 ~~~v~l~V~~~~   96 (111)
T 1vae_A           85 GEEVEMKVVSLL   96 (111)
T ss_dssp             TSEECEEEECEE
T ss_pred             CceEEEEEEecC
Confidence            4 5999998743

>2yub_A LIMK-2, LIM domain kinase 2; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.83  E-value=1.9e-08  Score=91.63  Aligned_cols=91  Identities=18%  Similarity=0.231  Sum_probs=69.7

Q ss_pred             EEEEEEeC--CCCCcccEEEeeecCCCCCCcCcEEEEEEcC--CChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHh
Q psy1156         389 TMVRVNRR--DFNEELGIYIAKIKNSSEGNIGGFVVAHIVS--GGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIIS  464 (671)
Q Consensus       389 ~~V~L~k~--~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~p--GspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~  464 (671)
                      +.|+|.+.  ...+.+||.+......... ..|++|..|.+  ++||+++| |++||+|++|||+.|..+++.++..+|.
T Consensus        14 ~~v~l~~~~~~~~g~~G~~v~l~~~~~~~-~~gv~V~~V~~~~~spA~~aG-L~~GD~Il~Vng~~v~~~~~~dl~~~l~   91 (118)
T 2yub_A           14 YSVTLISMPATTECRRGFSVTVESASSNY-ATTVQVKEVNRMHISPNNRNA-IHPGDRILEINGTPVRTLRVEEVEDAIK   91 (118)
T ss_dssp             CEEEEEEECSCSSSSCSSEEEEECTTSSS-CCEEEEEECCTTTSCTTHHHH-CCTTCCEEEESSSBTTTSCHHHHHHHHH
T ss_pred             ceeEEeccCCccCCCceEEEEeccccccC-CCcEEEEEecCCCCChHHHcC-CCCCCEEEEECCEECCCcCHHHHHHHHH
Confidence            44555441  2235677777643221111 16899999999  99999999 9999999999999999999999999998


Q ss_pred             cCCCeEEEEEEeCCccc
Q psy1156         465 SGPLNMDLLISRTSLKK  481 (671)
Q Consensus       465 ~~g~~V~L~V~R~~~~~  481 (671)
                      ..+..+.|+|.|.+...
T Consensus        92 ~~g~~v~l~v~R~g~~~  108 (118)
T 2yub_A           92 QTSQTLQLLIEHDPVPQ  108 (118)
T ss_dssp             CCSSCEEEEEEECSSCC
T ss_pred             hCCCEEEEEEEECCEEE
Confidence            66778999999987643

>3qik_A Phosphatidylinositol 3,4,5-trisphosphate-dependen exchanger 1 protein; PDZ domain, structural genomics consortium, SGC, hydrolase R; 2.29A {Homo sapiens}

Probab=98.83  E-value=1.5e-08  Score=90.37  Aligned_cols=78  Identities=24%  Similarity=0.378  Sum_probs=66.3

Q ss_pred             EEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhc---
Q psy1156         389 TMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISS---  465 (671)
Q Consensus       389 ~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~---  465 (671)
                      ..+.|.+.  ..++||.+....       .+++|..|.+||||+++| |++||+|++|||..|...++++++..++.   
T Consensus        19 ~~l~l~~~--~~g~G~~l~~~~-------~~~~I~~V~~gSpA~~AG-L~~GD~I~~Ing~~v~~~s~~dv~~~i~~~~~   88 (101)
T 3qik_A           19 KRLLILPQ--EEDYGFDIEEKN-------KAVVVKSVQRGSLAEVAG-LQVGRKIYSINEDLVFLRPFSEVESILNQSFC   88 (101)
T ss_dssp             EEEEECCC--SSSSSEEEEEET-------TEEEEEEECTTSHHHHHT-CCTTCBEEEETTEESTTSCHHHHHHHHHHHHH
T ss_pred             CeEEEEeC--CCcccEEEEccC-------CCeEEEEECCCCHHHHcC-CCCCCEEEEECCEEcCcCCHHHHHHHHHHhhc
Confidence            34555553  489999998643       678999999999999999 99999999999999988899999999985   


Q ss_pred             CCCeEEEEEEe
Q psy1156         466 GPLNMDLLISR  476 (671)
Q Consensus       466 ~g~~V~L~V~R  476 (671)
                      .+..|.|.|..
T Consensus        89 ~g~~v~LLV~~   99 (101)
T 3qik_A           89 SRRPLRLLVAT   99 (101)
T ss_dssp             TTCCEEEEEEC
T ss_pred             cCCeEEEEEec
Confidence            58899999864

>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation, cell projection, disease mutation, membrane, phosphoprotein, polymorphism; NMR {Homo sapiens}

Probab=98.81  E-value=3.7e-09  Score=106.12  Aligned_cols=87  Identities=21%  Similarity=0.276  Sum_probs=74.7

Q ss_pred             CCeEEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhc
Q psy1156         386 EGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISS  465 (671)
Q Consensus       386 ~~~~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~  465 (671)
                      ...+.|+|.+..  .+|||.|.++...     .|++|..|.+|+||+++| |++||+|++|||+.|.++++.+++.+|+.
T Consensus         8 ~~~r~v~l~k~~--~glG~~l~~~~~~-----~gv~V~~V~~gSpA~~aG-L~~GD~Il~VNG~~V~~~s~~dl~~~l~~   79 (216)
T 2krg_A            8 LRPRLCTMKKGP--SGYGFNLHSDKSK-----PGQFIRSVDPDSPAEASG-LRAQDRIVEVNGVCMEGKQHGDVVSAIRA   79 (216)
T ss_dssp             CCCEEEEEECCS--SSSCEEECCCSSS-----CSCBEEEECTTSHHHHHT-CCTTCBCCEETTEECTTCCTHHHHHHHHH
T ss_pred             cceEEEEEEeCC--CCceEEEEecCCC-----CCeEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHh
Confidence            456889998754  7899999876532     589999999999999999 99999999999999999999999999986


Q ss_pred             CCCeE-EEEEEeCCcc
Q psy1156         466 GPLNM-DLLISRTSLK  480 (671)
Q Consensus       466 ~g~~V-~L~V~R~~~~  480 (671)
                      .+..| .|+|.|.+..
T Consensus        80 ~g~~v~~l~V~R~g~~   95 (216)
T 2krg_A           80 GGDETKLLVVDRETDE   95 (216)
T ss_dssp             HCSEEEEEECCHHHHH
T ss_pred             cCCeEEEEEEEECCEE
Confidence            67788 8888876653

>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.80  E-value=1e-08  Score=93.51  Aligned_cols=91  Identities=25%  Similarity=0.427  Sum_probs=72.2

Q ss_pred             CCeEEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhc
Q psy1156         386 EGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISS  465 (671)
Q Consensus       386 ~~~~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~  465 (671)
                      ..++.+.+.+......|||.+....... .. .|++|..|.+++||+++|+|++||+|++|||+.|.  ++.++..+|+.
T Consensus        18 ~~~~~~~~~~~~~~~~lG~~~~~~~~~~-~~-~gv~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~--~~~~~~~~l~~   93 (124)
T 1wh1_A           18 LELEEVDLYRMNSQDKLGLTVCYRTDDE-DD-IGIYISEIDPNSIAAKDGRIREGDRIIQINGIEVQ--NREEAVALLTS   93 (124)
T ss_dssp             CEECCBCCCCSSTTCCCCEEEECCCCCS-SC-CCEEEEEECSSSHHHHTCCCCTTCEEEEESSCBCC--SHHHHHHHHTC
T ss_pred             ceEEEEEEEecCCCCcccEEEEecCCCC-CC-CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECC--CHHHHHHHHHh
Confidence            3445566666554568999998654321 11 68999999999999999999999999999999997  47888888985


Q ss_pred             C-CCeEEEEEEeCCcc
Q psy1156         466 G-PLNMDLLISRTSLK  480 (671)
Q Consensus       466 ~-g~~V~L~V~R~~~~  480 (671)
                      . +..|.|+|.|.+..
T Consensus        94 ~~g~~v~l~v~R~g~~  109 (124)
T 1wh1_A           94 EENKNFSLLIARPELQ  109 (124)
T ss_dssp             SSCCSCCEEEEECSSC
T ss_pred             CCCCEEEEEEEECCEE
Confidence            3 67899999998764

>2kjp_A Uncharacterized protein YLBL; mixed alpha-beta protein, cell membrane, hydrolase, membrane, protease, serine protease, transmembrane; NMR {Bacillus subtilis}

Probab=98.52  E-value=4.1e-08  Score=85.25  Aligned_cols=58  Identities=24%  Similarity=0.428  Sum_probs=51.6

Q ss_pred             ceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhc-CCCcEEEEEEeCCC
Q psy1156         606 GIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTI-KNGSISLHICRRLK  667 (671)
Q Consensus       606 GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~s-g~~~VtL~V~Rr~~  667 (671)
                      |++|..|.++|||++ | |++||+|++|||+++.  +..++..+|+.. +...|.|+|.|+.+
T Consensus         2 Gv~V~~V~~~spA~~-G-L~~GD~I~~InG~~v~--~~~~l~~~l~~~~~g~~v~l~v~R~g~   60 (91)
T 2kjp_A            2 GIYASSVVENMPAKG-K-IEVGDKIISADGKNYQ--SAEKLIDYISSKKAGDKVTLKIEREEK   60 (91)
T ss_dssp             CSSCCCCCCSSCCSS-C-CCSSCEEEEETTBCCS--SHHHHHHHHSSCCSSCEECEEEESSSC
T ss_pred             ceEEEEECCCChHHH-c-CCCCCEEEEECCEECC--CHHHHHHHHHcCCCCCEEEEEEEECCE
Confidence            789999999999999 8 9999999999999998  678999999876 34689999999764

>2l97_A HTRA, putative serine protease; HTRA-PDZ, protein binding; NMR {Streptococcus pneumoniae}

Probab=98.51  E-value=9.7e-08  Score=88.46  Aligned_cols=101  Identities=15%  Similarity=0.051  Sum_probs=71.7

Q ss_pred             ccccchhccccCCCCCCCCeEEEEEEeCCC-----CCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEE
Q psy1156         369 SMMEISELSSENSEDSQEGQTMVRVNRRDF-----NEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEI  443 (671)
Q Consensus       369 s~~~~v~~~~~~~~~~~~~~~~V~L~k~~~-----~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~I  443 (671)
                      +.++.+..++...+...+.+..|.+..-..     ...||+...    ..    .|++|..|.++|||+ +| |++||+|
T Consensus        11 ~~~~~v~~~L~~~G~v~r~~LGv~~~~~~~~~~~~~~~lgl~~~----~~----~g~~V~~V~~~spA~-aG-L~~GD~I   80 (134)
T 2l97_A           11 NDAINIIEQLEKNGKVTRPALGIQMVNLSNVSTSDIRRLNIPSN----VT----SGVIVRSVQSNMPAN-GH-LEKYDVI   80 (134)
T ss_dssp             CCCCCCCCCCCCCCCSSCCCCCCEEEESSSSCHHHHHHHSSCSS----SC----SCEEEEECSTTSGGG-TT-SCSSCEE
T ss_pred             HHHHHHHHHHHHcCCEeeeEeeEEEEECCchhHHHHHHcCCCcC----CC----CCEEEEEECCCCchH-HC-CCCCCEE
Confidence            445556666666666667777777655321     112443211    01    689999999999999 99 9999999


Q ss_pred             EccCCeeccCCCHHHHHHHHhc--CCCeEEEEEEeCCccc
Q psy1156         444 ISVNGQRLRGLTMTQAKSIISS--GPLNMDLLISRTSLKK  481 (671)
Q Consensus       444 laVNG~~V~~~s~~~av~~L~~--~g~~V~L~V~R~~~~~  481 (671)
                      ++|||+.+.++  .++...+..  .+..+.|+|.|++...
T Consensus        81 ~~inG~~v~~~--~~l~~~l~~~~~g~~v~l~v~R~g~~~  118 (134)
T 2l97_A           81 TKVDDKEIASS--TDLQSALYNHSIGDTIKITYYRNGKEE  118 (134)
T ss_dssp             EEETTEECCCH--HHHHHHHHHSSTTCEEEEEEEETTEEE
T ss_pred             EEECCEEcCCH--HHHHHHHHhCCCCCEEEEEEEECCEEE
Confidence            99999999764  556666653  5789999999987643

>3i18_A LMO2051 protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.70A {Listeria monocytogenes} PDB: 2kjk_A 3i1e_A

Probab=98.50  E-value=2.7e-07  Score=80.99  Aligned_cols=59  Identities=24%  Similarity=0.352  Sum_probs=51.2

Q ss_pred             cceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhc-CCCcEEEEEEeCCC
Q psy1156         605 IGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTI-KNGSISLHICRRLK  667 (671)
Q Consensus       605 ~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~s-g~~~VtL~V~Rr~~  667 (671)
                      .|++|..|.++|||+. | |++||+|++|||++|.  +..++..+|... +...|.|+|.|+.+
T Consensus         7 ~Gv~V~~V~~~spA~~-G-L~~GD~I~~Ing~~v~--~~~dl~~~l~~~~~g~~v~l~v~R~g~   66 (100)
T 3i18_A            7 DGVYVMSVKDDVPAAD-V-LHAGDLITEIDGNAFK--SSQEFIDYIHSKKVGDTVKINYKHGDK   66 (100)
T ss_dssp             CCEEEEEECTTSGGGG-T-CCTTCEEEEETTBCCS--SHHHHHHHHHTSCTTCEEEEEEEETTE
T ss_pred             CCEEEEEeCCCCchHH-C-CCCCCEEEEECCEECC--CHHHHHHHHHhCCCCCEEEEEEEECCE
Confidence            5899999999999995 8 9999999999999998  678888888864 34679999988753

>2i6v_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.63A {Vibrio cholerae} SCOP: b.36.1.5

Probab=98.50  E-value=2e-07  Score=79.67  Aligned_cols=59  Identities=24%  Similarity=0.256  Sum_probs=50.7

Q ss_pred             cceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhc-CCCcEEEEEEeCC
Q psy1156         605 IGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTI-KNGSISLHICRRL  666 (671)
Q Consensus       605 ~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~s-g~~~VtL~V~Rr~  666 (671)
                      .|+.|..+.|+|+|+++| |++||+|++|||++|.  ++.++..++... +...+.|.|.|+.
T Consensus        19 ~G~~V~~~~~~s~A~~aG-l~~GD~I~~ing~~v~--~~~d~~~~~~~~~~g~~v~l~v~R~g   78 (87)
T 2i6v_A           19 LGYRVSPGKDPVLFESIG-LQDGDMAVALNGLDLT--DPNVMNTLFQSMNEMTEMSLTVERDG   78 (87)
T ss_dssp             EEEEEEECSCHHHHHHTT-CCTTCEEEEETTEETT--CHHHHHHHHHTGGGCSEEEEEEEETT
T ss_pred             EEEEEEeCCCCCHHHHCC-CCCCCEEEEECCEECC--CHHHHHHHHHhcCCCCEEEEEEEECC
Confidence            478899999999999999 9999999999999998  678888888754 2367999998875

>3id1_A Regulator of sigma E protease; hydrolase, cell inner membrane, cell membrane, membrane, metal-binding, metalloprotease, transmembrane; 1.67A {Escherichia coli k-12} PDB: 2zpl_A

Probab=98.47  E-value=4.9e-07  Score=78.84  Aligned_cols=57  Identities=18%  Similarity=0.128  Sum_probs=50.3

Q ss_pred             eEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcCC-CcEEEEEEeCCC
Q psy1156         608 FIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKN-GSISLHICRRLK  667 (671)
Q Consensus       608 fIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg~-~~VtL~V~Rr~~  667 (671)
                      +|..|.++|||+++| |++||+|++|||+.|.  ++.++...|..... ..|.|+|.|...
T Consensus         5 ~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~--~~~d~~~~l~~~~~~~~v~l~v~R~g~   62 (95)
T 3id1_A            5 VVGEIAANSIAAEAQ-IAPGTELKAVDGIETP--DWDAVRLQLVDKIGDESTTITVAPFGS   62 (95)
T ss_dssp             BEEEECTTSHHHHTT-CCTTCEEEEETTEECS--SHHHHHHHHHHTTTCSEEEEEEECTTC
T ss_pred             EEEeeCCCCHHHHcC-CCCCCEEEEECCEECC--CHHHHHHHHHHhcCCCcEEEEEEECCC
Confidence            789999999999999 9999999999999998  77888888876533 579999998864

>2zpm_A Regulator of sigma E protease; metalloproteinase, membrane protein, PDZ domain, hydrolase, inner membrane, membrane, metal-binding; HET: MLY MSE; 0.98A {Escherichia coli} PDB: 3id2_A 3id3_A 3id4_A

Probab=98.47  E-value=2.9e-07  Score=78.72  Aligned_cols=58  Identities=24%  Similarity=0.385  Sum_probs=50.8

Q ss_pred             ceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcCCCcEEEEEEeCC
Q psy1156         606 GIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKNGSISLHICRRL  666 (671)
Q Consensus       606 GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg~~~VtL~V~Rr~  666 (671)
                      +++|..|.++|||+++| |++||+|++|||+++.  ++.++..+|.......+.|+|.|+.
T Consensus         5 ~~~V~~v~~~spA~~aG-l~~GD~I~~ing~~v~--~~~~~~~~l~~~~g~~v~l~v~R~g   62 (91)
T 2zpm_A            5 EPVLENVQPNSAASXAG-LQAGDRIVXVDGQPLT--QWVTFVMLVRDNPGXSLALEIERQG   62 (91)
T ss_dssp             -CBCSEECTTSHHHHTT-CCTTCEEEEETTEECC--CHHHHHHHHHHCTTCCEEEEEEETT
T ss_pred             CeEEEEECCCChHHhcC-CCCCCEEEEECCeEcC--CHHHHHHHHhcCCCCeEEEEEEECC
Confidence            46889999999999999 9999999999999998  6789998888764468999998865

>2pzd_A Serine protease HTRA2; PDZ domain, apoptosis, mitochondria, peptid module, hydrolase; 2.75A {Homo sapiens} SCOP: b.36.1.4

Probab=98.47  E-value=4.4e-07  Score=80.85  Aligned_cols=57  Identities=26%  Similarity=0.444  Sum_probs=51.7

Q ss_pred             cceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcCCCcEEEEEEeCC
Q psy1156         605 IGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKNGSISLHICRRL  666 (671)
Q Consensus       605 ~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg~~~VtL~V~Rr~  666 (671)
                      .|++|..|.++|||+++| |++||+|++|||+++.  +..++..+|+. + ..+.|+|.|+.
T Consensus        35 ~gv~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~--~~~~~~~~l~~-~-~~v~l~v~R~g   91 (113)
T 2pzd_A           35 HGVLIHKVILGSPAHRAG-LRPGDVILAIGEQMVQ--NAEDVYEAVRT-Q-SQLAVQIRRGR   91 (113)
T ss_dssp             SCEEEEEEBTTSHHHHHT-CCTTCEEEEETTEECC--SHHHHHHHHHH-C-SSEEEEEEETT
T ss_pred             CCeEEEEeCCCChHHHcC-CCCCCEEEEECCEECC--CHHHHHHHHhC-C-CeEEEEEEECC
Confidence            589999999999999999 9999999999999998  67888888887 3 68999998865

>2kl1_A YLBL protein; structure genomics, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; NMR {Geobacillus thermodenitrificans}

Probab=98.44  E-value=1.9e-07  Score=81.18  Aligned_cols=59  Identities=31%  Similarity=0.441  Sum_probs=51.8

Q ss_pred             cceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhc-CCCcEEEEEEeCCC
Q psy1156         605 IGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTI-KNGSISLHICRRLK  667 (671)
Q Consensus       605 ~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~s-g~~~VtL~V~Rr~~  667 (671)
                      .|++|..|.++|||++ | |++||+|++|||.++.  +..++..+|+.. ....|.|.|.|+.+
T Consensus         5 ~Gv~V~~V~~~spA~~-G-L~~GD~Il~InG~~v~--~~~~l~~~l~~~~~g~~v~l~v~R~g~   64 (94)
T 2kl1_A            5 KGVYVMSVLPNMPAAG-R-LEAGDRIAAIDGQPIN--TSEQIVSYVREKQAGDRVRVTFIRDRK   64 (94)
T ss_dssp             CCEECCCCCTTSTTBT-T-BCTTCEEEEETTBCCC--CHHHHHHHHHHSCTTCCEEEEEEETTE
T ss_pred             CcEEEEEECCCChHHh-C-CCCCCEEEEECCEECC--CHHHHHHHHHhCCCCCEEEEEEEECCE
Confidence            4899999999999998 8 9999999999999998  578888888875 34689999998753

>2l97_A HTRA, putative serine protease; HTRA-PDZ, protein binding; NMR {Streptococcus pneumoniae}

Probab=98.40  E-value=6e-07  Score=83.12  Aligned_cols=59  Identities=19%  Similarity=0.218  Sum_probs=51.7

Q ss_pred             cceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhc-CCCcEEEEEEeCCC
Q psy1156         605 IGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTI-KNGSISLHICRRLK  667 (671)
Q Consensus       605 ~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~s-g~~~VtL~V~Rr~~  667 (671)
                      .|++|..|.++|||+ +| |++||+|++|||+++.  +..++..+|... ....|.|+|.|+.+
T Consensus        57 ~g~~V~~V~~~spA~-aG-L~~GD~I~~inG~~v~--~~~~l~~~l~~~~~g~~v~l~v~R~g~  116 (134)
T 2l97_A           57 SGVIVRSVQSNMPAN-GH-LEKYDVITKVDDKEIA--SSTDLQSALYNHSIGDTIKITYYRNGK  116 (134)
T ss_dssp             SCEEEEECSTTSGGG-TT-SCSSCEEEEETTEECC--CHHHHHHHHHHSSTTCEEEEEEEETTE
T ss_pred             CCEEEEEECCCCchH-HC-CCCCCEEEEECCEEcC--CHHHHHHHHHhCCCCCEEEEEEEECCE
Confidence            589999999999999 99 9999999999999998  668888888775 34689999998753

>2p3w_A Probable serine protease HTRA3; PDZ domain, phage derived high affinity ligand, protein BIND; 1.70A {Homo sapiens}

Probab=98.36  E-value=1e-06  Score=78.49  Aligned_cols=57  Identities=23%  Similarity=0.405  Sum_probs=50.6

Q ss_pred             cceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcCCCcEEEEEEeCC
Q psy1156         605 IGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKNGSISLHICRRL  666 (671)
Q Consensus       605 ~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg~~~VtL~V~Rr~  666 (671)
                      .|++|..|.++|||+++| |++||+|++|||+++.  +..++..+|+. + ..+.|+|.|+.
T Consensus        35 ~gv~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~--~~~~~~~~l~~-g-~~v~l~v~R~g   91 (112)
T 2p3w_A           35 SGIYVQEVAPNSPSQRGG-IQDGDIIVKVNGRPLV--DSSELQEAVLT-E-SPLLLEVRRGN   91 (112)
T ss_dssp             SSEEEEEECTTSHHHHHT-CCTTCEEEEETTEECC--SHHHHHHHHHH-C-SSEEEEEEETT
T ss_pred             CCeEEEEECCCChHHHCC-CCCCCEEEEECCEECC--CHHHHHHHHhC-C-CeEEEEEEECC
Confidence            589999999999999999 9999999999999998  67888888854 3 68999998865

>1fc6_A Photosystem II D1 protease; D1 C-terminal processing protease, serine protease, serine- lysine catalytic DYAD, PDZ domain, photosynthesis; 1.80A {Scenedesmus obliquus} SCOP: b.36.1.3 c.14.1.2 PDB: 1fc9_A 1fc7_A 1fcf_A

Probab=98.31  E-value=1.6e-06  Score=93.62  Aligned_cols=76  Identities=14%  Similarity=0.314  Sum_probs=63.2

Q ss_pred             CcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcCCCcEEEEEEeCCC
Q psy1156         588 KGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKNGSISLHICRRLK  667 (671)
Q Consensus       588 ~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg~~~VtL~V~Rr~~  667 (671)
                      .++|+.+.....   ...|++|..|.++|||+++| |++||+|++|||++|.+++..+++.+|+......|.|+|.|...
T Consensus        85 ~giG~~~~~~~~---~~~~~~V~~v~~~spA~~aG-l~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~r~g~  160 (388)
T 1fc6_A           85 TGVGLEITYDGG---SGKDVVVLTPAPGGPAEKAG-ARAGDVIVTVDGTAVKGMSLYDVSDLLQGEADSQVEVVLHAPGA  160 (388)
T ss_dssp             BBCSEEEEECTT---CSSCEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHCBSTTCEEEEEEEETTE
T ss_pred             EEEEEEEEEeec---CCCcEEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhcCCCCEEEEEEEeCCC
Confidence            578988864310   11479999999999999999 99999999999999999989999999986544679999988653

>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane protein; 1.65A {Homo sapiens} PDB: 4edj_A

Probab=98.31  E-value=1.1e-06  Score=86.97  Aligned_cols=73  Identities=19%  Similarity=0.217  Sum_probs=51.7

Q ss_pred             cccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCC-CEEEEECCeecCCCCHHHHHHHHHhcCCCcEEEEEEeCC
Q psy1156         589 GLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEG-DEILAINGQVCHDLTHLEAISLFKTIKNGSISLHICRRL  666 (671)
Q Consensus       589 ~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~G-DrILeVNG~sV~~lSheEAV~lLK~sg~~~VtL~V~Rr~  666 (671)
                      ++|++...+..   +..|++|..|.++|||+++| |++| |+|++|||++|..+..... .+++..+...|.|+|.|..
T Consensus         3 g~~~~~~~~~~---~~~G~~V~~V~~~SpA~~AG-L~~G~D~I~~ing~~v~~~~~~~~-~~~~~~~g~~v~l~v~R~~   76 (209)
T 3rle_A            3 GSSQSVEIPGG---GTEGYHVLRVQENSPGHRAG-LEPFFDFIVSINGSRLNKDNDTLK-DLLKANVEKPVKMLIYSSK   76 (209)
T ss_dssp             -----CCCTTS---SSEEEEEEEECTTSHHHHTT-CCTTTEEEEEETTEECCSSSSHHH-HHHHHTTTSCEEEEEEETT
T ss_pred             chhhhhhccCC---CCCEEEEEEECCCCHHHHCC-CCcCCeEEEEECCEECcCHHHHHH-HHHhcCCCCEEEEEEEecC
Confidence            34454443332   23689999999999999999 9999 9999999999986543322 3444444578999998864

>2i4s_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.92A {Vibrio cholerae} SCOP: b.36.1.5

Probab=98.24  E-value=1.7e-06  Score=76.47  Aligned_cols=58  Identities=26%  Similarity=0.271  Sum_probs=47.6

Q ss_pred             ceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhc-CCCcEEEEEEeCC
Q psy1156         606 GIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTI-KNGSISLHICRRL  666 (671)
Q Consensus       606 GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~s-g~~~VtL~V~Rr~  666 (671)
                      |++|..+.|+++|+++| |++||+|++|||++|..  +.++..++... +...+.|.|.|+.
T Consensus        38 G~~V~~~~pas~A~~aG-l~~GDvI~~ing~~v~~--~~d~~~~~~~~~~g~~v~l~v~R~g   96 (105)
T 2i4s_A           38 GYRVSPGKDPVLFESIG-LQDGDMAVALNGLDLTD--PNVMNTLFQSMNEMTEMSLTVERDG   96 (105)
T ss_dssp             EEEEEECSCTHHHHHHT-CCTTCEEEEETTEETTS--TTHHHHHHHHHTTCSEEEEEEEETT
T ss_pred             EEEEecCCCCCHHHHcC-CCCCCEEEEECCEECCC--HHHHHHHHHhcCCCCeEEEEEEECC
Confidence            67788889999999999 99999999999999984  45666666643 2368999998875

>2pzd_A Serine protease HTRA2; PDZ domain, apoptosis, mitochondria, peptid module, hydrolase; 2.75A {Homo sapiens} SCOP: b.36.1.4

Probab=98.20  E-value=3e-06  Score=75.41  Aligned_cols=59  Identities=19%  Similarity=0.370  Sum_probs=52.1

Q ss_pred             CcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhcCCCeEEEEEEeCCcc
Q psy1156         418 GGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISRTSLK  480 (671)
Q Consensus       418 ~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~~g~~V~L~V~R~~~~  480 (671)
                      .|++|..|.++|||+++| |++||+|++|||+.+..  ..++...+.. +..+.|+|.|++..
T Consensus        35 ~gv~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~--~~~~~~~l~~-~~~v~l~v~R~g~~   93 (113)
T 2pzd_A           35 HGVLIHKVILGSPAHRAG-LRPGDVILAIGEQMVQN--AEDVYEAVRT-QSQLAVQIRRGRET   93 (113)
T ss_dssp             SCEEEEEEBTTSHHHHHT-CCTTCEEEEETTEECCS--HHHHHHHHHH-CSSEEEEEEETTEE
T ss_pred             CCeEEEEeCCCChHHHcC-CCCCCEEEEECCEECCC--HHHHHHHHhC-CCeEEEEEEECCEE
Confidence            789999999999999999 99999999999999974  6777777775 67899999997753

>2i6v_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.63A {Vibrio cholerae} SCOP: b.36.1.5

Probab=98.18  E-value=1.6e-06  Score=73.96  Aligned_cols=59  Identities=24%  Similarity=0.284  Sum_probs=49.0

Q ss_pred             CcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHh--cCCCeEEEEEEeCCc
Q psy1156         418 GGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIIS--SGPLNMDLLISRTSL  479 (671)
Q Consensus       418 ~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~--~~g~~V~L~V~R~~~  479 (671)
                      .|+.|..+.|++||+++| |++||+|++|||+.+.++  .++..++.  ..+..+.|+|.|++.
T Consensus        19 ~G~~V~~~~~~s~A~~aG-l~~GD~I~~ing~~v~~~--~d~~~~~~~~~~g~~v~l~v~R~g~   79 (87)
T 2i6v_A           19 LGYRVSPGKDPVLFESIG-LQDGDMAVALNGLDLTDP--NVMNTLFQSMNEMTEMSLTVERDGQ   79 (87)
T ss_dssp             EEEEEEECSCHHHHHHTT-CCTTCEEEEETTEETTCH--HHHHHHHHTGGGCSEEEEEEEETTE
T ss_pred             EEEEEEeCCCCCHHHHCC-CCCCCEEEEECCEECCCH--HHHHHHHHhcCCCCEEEEEEEECCE
Confidence            578888999999999999 999999999999999754  45555555  246789999999875

>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A* 1sot_A 1soz_A 1vcw_A 2r3y_A

Probab=98.15  E-value=5.4e-06  Score=87.02  Aligned_cols=60  Identities=22%  Similarity=0.372  Sum_probs=53.2

Q ss_pred             cceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHh-cCCCcEEEEEEeCCC
Q psy1156         605 IGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKT-IKNGSISLHICRRLK  667 (671)
Q Consensus       605 ~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~-sg~~~VtL~V~Rr~~  667 (671)
                      .|++|..|.++|||+++| |++||+|++|||+++.  +..++..+|+. .+...|.|+|.|+.+
T Consensus       244 ~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~--~~~~l~~~l~~~~~g~~v~l~v~R~g~  304 (318)
T 1te0_A          244 QGIVVNEVSPDGPAANAG-IQVNDLIISVDNKPAI--SALETMDQVAEIRPGSVIPVVVMRDDK  304 (318)
T ss_dssp             CCEEEEEECTTSTTTTTC-CCTTCCEEEETTEECC--CHHHHHHHHHTSCTTCEEEEEEESSSC
T ss_pred             CcEEEEEeCCCChHHHCC-CCCCCEEEEECCEEcC--CHHHHHHHHHhcCCCCEEEEEEEECCE
Confidence            589999999999999999 9999999999999998  67888888886 334689999998764

>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics, PSI, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A

Probab=98.15  E-value=5.5e-06  Score=87.00  Aligned_cols=73  Identities=16%  Similarity=0.311  Sum_probs=59.2

Q ss_pred             CcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhc-CCCcEEEEEEe-C
Q psy1156         588 KGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTI-KNGSISLHICR-R  665 (671)
Q Consensus       588 ~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~s-g~~~VtL~V~R-r  665 (671)
                      ..||+.+.....    ..|++|..|.+++||+++| |++||+|++|||+++.  +..++..+|... +...|.|+|.| +
T Consensus       229 ~~lGi~~~~~~~----~~g~~V~~v~~~spA~~aG-l~~GD~I~~ing~~v~--~~~~l~~~l~~~~~g~~v~l~v~R~~  301 (324)
T 1y8t_A          229 ASLGVQVTNDKD----TLGAKIVEVVAGGAAANAG-VPKGVVVTKVDDRPIN--SADALVAAVRSKAPGATVALTFQDPS  301 (324)
T ss_dssp             EECCEEEESCSS----SSSEEEEEECTTSTTTTTT-CCTTCEEEEETTEECC--SHHHHHHHHHTSCTTCEEEEEEECSS
T ss_pred             cccceEeeeccC----CCceEEEEECCCChHHHcC-CCCCCEEEEECCEECC--CHHHHHHHHHhcCCCCEEEEEEEECC
Confidence            467888764321    2489999999999999999 9999999999999998  668888888753 34679999998 5


Q ss_pred             CC
Q psy1156         666 LK  667 (671)
Q Consensus       666 ~~  667 (671)
                      .+
T Consensus       302 g~  303 (324)
T 1y8t_A          302 GG  303 (324)
T ss_dssp             CC
T ss_pred             CC
Confidence            43

>3i18_A LMO2051 protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.70A {Listeria monocytogenes} PDB: 2kjk_A 3i1e_A

Probab=98.14  E-value=3.4e-06  Score=73.94  Aligned_cols=59  Identities=17%  Similarity=0.171  Sum_probs=50.2

Q ss_pred             CcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhc--CCCeEEEEEEeCCcc
Q psy1156         418 GGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISS--GPLNMDLLISRTSLK  480 (671)
Q Consensus       418 ~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~--~g~~V~L~V~R~~~~  480 (671)
                      .|++|..|.+++||+. | |++||+|++|||+.+..  ..++..+|..  .+..+.|+|.|.+..
T Consensus         7 ~Gv~V~~V~~~spA~~-G-L~~GD~I~~Ing~~v~~--~~dl~~~l~~~~~g~~v~l~v~R~g~~   67 (100)
T 3i18_A            7 DGVYVMSVKDDVPAAD-V-LHAGDLITEIDGNAFKS--SQEFIDYIHSKKVGDTVKINYKHGDKN   67 (100)
T ss_dssp             CCEEEEEECTTSGGGG-T-CCTTCEEEEETTBCCSS--HHHHHHHHHTSCTTCEEEEEEEETTEE
T ss_pred             CCEEEEEeCCCCchHH-C-CCCCCEEEEECCEECCC--HHHHHHHHHhCCCCCEEEEEEEECCEE
Confidence            7899999999999995 8 99999999999999975  4566666663  578899999998764

>2kjp_A Uncharacterized protein YLBL; mixed alpha-beta protein, cell membrane, hydrolase, membrane, protease, serine protease, transmembrane; NMR {Bacillus subtilis}

Probab=98.11  E-value=1e-06  Score=76.39  Aligned_cols=58  Identities=28%  Similarity=0.384  Sum_probs=50.3

Q ss_pred             cEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhc--CCCeEEEEEEeCCcc
Q psy1156         419 GFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISS--GPLNMDLLISRTSLK  480 (671)
Q Consensus       419 GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~--~g~~V~L~V~R~~~~  480 (671)
                      |++|..|.++|||++ | |++||+|++|||+.+..  ..++..++..  .+..+.|+|.|++..
T Consensus         2 Gv~V~~V~~~spA~~-G-L~~GD~I~~InG~~v~~--~~~l~~~l~~~~~g~~v~l~v~R~g~~   61 (91)
T 2kjp_A            2 GIYASSVVENMPAKG-K-IEVGDKIISADGKNYQS--AEKLIDYISSKKAGDKVTLKIEREEKE   61 (91)
T ss_dssp             CSSCCCCCCSSCCSS-C-CCSSCEEEEETTBCCSS--HHHHHHHHSSCCSSCEECEEEESSSCE
T ss_pred             ceEEEEECCCChHHH-c-CCCCCEEEEECCEECCC--HHHHHHHHHcCCCCCEEEEEEEECCEE
Confidence            678999999999999 9 99999999999999975  4677788874  478899999998764

>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone, DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}

Probab=98.10  E-value=4.5e-06  Score=89.03  Aligned_cols=60  Identities=28%  Similarity=0.409  Sum_probs=53.8

Q ss_pred             cceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhc-CCCcEEEEEEeCCC
Q psy1156         605 IGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTI-KNGSISLHICRRLK  667 (671)
Q Consensus       605 ~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~s-g~~~VtL~V~Rr~~  667 (671)
                      .|++|..|.++|||+++| |++||+|++|||++|.  +..++..+|... +...|.|+|.|+.+
T Consensus       263 ~G~~V~~V~~~spA~~aG-L~~GDvI~~ing~~v~--~~~~l~~~l~~~~~g~~v~l~v~R~g~  323 (345)
T 3stj_A          263 RGAFVSEVLPGSGSAKAG-VKAGDIITSLNGKPLN--SFAELRSRIATTEPGTKVKLGLLRNGK  323 (345)
T ss_dssp             SSEEEEEECTTSHHHHHT-CCTTCEECEETTEECS--CHHHHHHHHHTSCTTCEEEEEEEETTE
T ss_pred             ceEEEEEeccCChHHHcC-CCCCCEEEEECCEECC--CHHHHHHHHHhcCCCCEEEEEEEECCE
Confidence            589999999999999999 9999999999999998  778999888764 34689999999764

>1fc6_A Photosystem II D1 protease; D1 C-terminal processing protease, serine protease, serine- lysine catalytic DYAD, PDZ domain, photosynthesis; 1.80A {Scenedesmus obliquus} SCOP: b.36.1.3 c.14.1.2 PDB: 1fc9_A 1fc7_A 1fcf_A

Probab=98.10  E-value=8.1e-06  Score=88.12  Aligned_cols=75  Identities=23%  Similarity=0.429  Sum_probs=63.2

Q ss_pred             CcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHh-cCCCeEEEEEEeCC
Q psy1156         400 EELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIIS-SGPLNMDLLISRTS  478 (671)
Q Consensus       400 ~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~-~~g~~V~L~V~R~~  478 (671)
                      .++|+.+.......    .+++|..|.+++||+++| |++||+|++|||+.+.++...++..+|+ ..+..|.|+|.|.+
T Consensus        85 ~giG~~~~~~~~~~----~~~~V~~v~~~spA~~aG-l~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~r~g  159 (388)
T 1fc6_A           85 TGVGLEITYDGGSG----KDVVVLTPAPGGPAEKAG-ARAGDVIVTVDGTAVKGMSLYDVSDLLQGEADSQVEVVLHAPG  159 (388)
T ss_dssp             BBCSEEEEECTTCS----SCEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHCBSTTCEEEEEEEETT
T ss_pred             EEEEEEEEEeecCC----CcEEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhcCCCCEEEEEEEeCC
Confidence            57888887531101    689999999999999999 9999999999999999998888888887 35678999999987


Q ss_pred             c
Q psy1156         479 L  479 (671)
Q Consensus       479 ~  479 (671)
                      .
T Consensus       160 ~  160 (388)
T 1fc6_A          160 A  160 (388)
T ss_dssp             E
T ss_pred             C
Confidence            5

>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone, DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}

Probab=98.05  E-value=6.7e-07  Score=95.43  Aligned_cols=97  Identities=18%  Similarity=0.254  Sum_probs=69.6

Q ss_pred             cchhccccCCCCCCCCeEEEEEEeCC--CCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCe
Q psy1156         372 EISELSSENSEDSQEGQTMVRVNRRD--FNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQ  449 (671)
Q Consensus       372 ~~v~~~~~~~~~~~~~~~~V~L~k~~--~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~  449 (671)
                      +....++...+...+++..|.+..-.  ....||+..      .    .|++|..|.++|||+++| |++||+|++|||+
T Consensus       225 ~~~~~~l~~~g~v~~~~lGv~~~~~~~~~a~~~gl~~------~----~G~~V~~V~~~spA~~aG-L~~GDvI~~ing~  293 (345)
T 3stj_A          225 RTLAQQLIDFGEIKRGLLGIKGTEMSADIAKAFNLDV------Q----RGAFVSEVLPGSGSAKAG-VKAGDIITSLNGK  293 (345)
T ss_dssp             HHHHHHHHHHSSCCCEECCEEEEECCHHHHHHTTCSC------C----SSEEEEEECTTSHHHHHT-CCTTCEECEETTE
T ss_pred             HHHHHHHHhcccccccccceeeEeecHHHHHhcCCCC------C----ceEEEEEeccCChHHHcC-CCCCCEEEEECCE
Confidence            33444444455556667767665421  112344421      1    789999999999999999 9999999999999


Q ss_pred             eccCCCHHHHHHHHh--cCCCeEEEEEEeCCccc
Q psy1156         450 RLRGLTMTQAKSIIS--SGPLNMDLLISRTSLKK  481 (671)
Q Consensus       450 ~V~~~s~~~av~~L~--~~g~~V~L~V~R~~~~~  481 (671)
                      .|..  ..+...++.  ..+..+.|+|.|+++..
T Consensus       294 ~v~~--~~~l~~~l~~~~~g~~v~l~v~R~g~~~  325 (345)
T 3stj_A          294 PLNS--FAELRSRIATTEPGTKVKLGLLRNGKPL  325 (345)
T ss_dssp             ECSC--HHHHHHHHHTSCTTCEEEEEEEETTEEE
T ss_pred             ECCC--HHHHHHHHHhcCCCCEEEEEEEECCEEE
Confidence            9974  556666666  36889999999988743

>2i4s_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.92A {Vibrio cholerae} SCOP: b.36.1.5

Probab=98.04  E-value=1e-05  Score=71.47  Aligned_cols=59  Identities=24%  Similarity=0.302  Sum_probs=47.7

Q ss_pred             CcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHh--cCCCeEEEEEEeCCc
Q psy1156         418 GGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIIS--SGPLNMDLLISRTSL  479 (671)
Q Consensus       418 ~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~--~~g~~V~L~V~R~~~  479 (671)
                      .|+.|..+.|++||+++| |++||+|++|||+.|.++...  ..++.  ..+..+.|+|.|++.
T Consensus        37 ~G~~V~~~~pas~A~~aG-l~~GDvI~~ing~~v~~~~d~--~~~~~~~~~g~~v~l~v~R~g~   97 (105)
T 2i4s_A           37 LGYRVSPGKDPVLFESIG-LQDGDMAVALNGLDLTDPNVM--NTLFQSMNEMTEMSLTVERDGQ   97 (105)
T ss_dssp             EEEEEEECSCTHHHHHHT-CCTTCEEEEETTEETTSTTHH--HHHHHHHTTCSEEEEEEEETTE
T ss_pred             EEEEEecCCCCCHHHHcC-CCCCCEEEEECCEECCCHHHH--HHHHHhcCCCCeEEEEEEECCE
Confidence            467788888888999999 999999999999999877543  33343  357889999999875

>2p3w_A Probable serine protease HTRA3; PDZ domain, phage derived high affinity ligand, protein BIND; 1.70A {Homo sapiens}

Probab=98.04  E-value=7.8e-06  Score=72.68  Aligned_cols=59  Identities=20%  Similarity=0.332  Sum_probs=51.0

Q ss_pred             CcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhcCCCeEEEEEEeCCcc
Q psy1156         418 GGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISRTSLK  480 (671)
Q Consensus       418 ~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~~g~~V~L~V~R~~~~  480 (671)
                      .|++|..|.+++||+++| |++||+|++|||+.+..  ..++...+. .+..+.|+|.|.+..
T Consensus        35 ~gv~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~--~~~~~~~l~-~g~~v~l~v~R~g~~   93 (112)
T 2p3w_A           35 SGIYVQEVAPNSPSQRGG-IQDGDIIVKVNGRPLVD--SSELQEAVL-TESPLLLEVRRGNDD   93 (112)
T ss_dssp             SSEEEEEECTTSHHHHHT-CCTTCEEEEETTEECCS--HHHHHHHHH-HCSSEEEEEEETTEE
T ss_pred             CCeEEEEECCCChHHHCC-CCCCCEEEEECCEECCC--HHHHHHHHh-CCCeEEEEEEECCEE
Confidence            689999999999999999 99999999999999975  466666665 467899999997753

>2hga_A Conserved protein MTH1368; GFT structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: b.36.1.6

Probab=98.03  E-value=8.9e-06  Score=74.66  Aligned_cols=57  Identities=25%  Similarity=0.232  Sum_probs=48.8

Q ss_pred             cceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhc-CCCcEEEEEEeCC
Q psy1156         605 IGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTI-KNGSISLHICRRL  666 (671)
Q Consensus       605 ~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~s-g~~~VtL~V~Rr~  666 (671)
                      .|++|..|.+++||+++  |++||+|++|||++|.  +..++..+|+.. ....|.|+| |+.
T Consensus        25 ~gv~V~~V~~~spA~~a--L~~GD~Il~InG~~v~--~~~dl~~~l~~~~~g~~v~l~V-R~g   82 (125)
T 2hga_A           25 DGVQIDSVVPGSPASKV--LTPGLVIESINGMPTS--NLTTYSAALKTISVGEVINITT-DQG   82 (125)
T ss_dssp             CCEEEEEECSSSGGGGT--SCTTCEEEEETTEECS--SHHHHHHHHTTCCTTCEEEEEE-TTE
T ss_pred             CceEEEEECCCChHHHh--cCCCCEEEEECCEEcC--CHHHHHHHHHhcCCCCEEEEEE-ECC
Confidence            48999999999999998  9999999999999998  678888888753 346799999 753

>3id1_A Regulator of sigma E protease; hydrolase, cell inner membrane, cell membrane, membrane, metal-binding, metalloprotease, transmembrane; 1.67A {Escherichia coli k-12} PDB: 2zpl_A

Probab=98.01  E-value=7.6e-06  Score=71.23  Aligned_cols=57  Identities=14%  Similarity=0.176  Sum_probs=47.2

Q ss_pred             EEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhc-C-CCeEEEEEEeCCc
Q psy1156         420 FVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISS-G-PLNMDLLISRTSL  479 (671)
Q Consensus       420 I~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~-~-g~~V~L~V~R~~~  479 (671)
                      .+|..|.++|||+++| |++||+|++|||+.+..+  .++...|.. . +..+.|+|.|.+.
T Consensus         4 p~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~--~d~~~~l~~~~~~~~v~l~v~R~g~   62 (95)
T 3id1_A            4 PVVGEIAANSIAAEAQ-IAPGTELKAVDGIETPDW--DAVRLQLVDKIGDESTTITVAPFGS   62 (95)
T ss_dssp             CBEEEECTTSHHHHTT-CCTTCEEEEETTEECSSH--HHHHHHHHHTTTCSEEEEEEECTTC
T ss_pred             CEEEeeCCCCHHHHcC-CCCCCEEEEECCEECCCH--HHHHHHHHHhcCCCcEEEEEEECCC
Confidence            4688999999999999 999999999999999754  566666653 2 3689999999764

>2kl1_A YLBL protein; structure genomics, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; NMR {Geobacillus thermodenitrificans}

Probab=98.01  E-value=3.3e-06  Score=73.30  Aligned_cols=59  Identities=22%  Similarity=0.277  Sum_probs=51.0

Q ss_pred             CcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhc--CCCeEEEEEEeCCcc
Q psy1156         418 GGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISS--GPLNMDLLISRTSLK  480 (671)
Q Consensus       418 ~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~--~g~~V~L~V~R~~~~  480 (671)
                      .|++|..|.++|||++ | |++||+|++|||..+..  ..++..++..  .+..+.|+|.|.+..
T Consensus         5 ~Gv~V~~V~~~spA~~-G-L~~GD~Il~InG~~v~~--~~~l~~~l~~~~~g~~v~l~v~R~g~~   65 (94)
T 2kl1_A            5 KGVYVMSVLPNMPAAG-R-LEAGDRIAAIDGQPINT--SEQIVSYVREKQAGDRVRVTFIRDRKQ   65 (94)
T ss_dssp             CCEECCCCCTTSTTBT-T-BCTTCEEEEETTBCCCC--HHHHHHHHHHSCTTCCEEEEEEETTEE
T ss_pred             CcEEEEEECCCChHHh-C-CCCCCEEEEECCEECCC--HHHHHHHHHhCCCCCEEEEEEEECCEE
Confidence            6899999999999998 8 99999999999999975  4667777764  578999999998764

>3qo6_A Protease DO-like 1, chloroplastic; protease, HTRA, PH-sensor, hydrolase, photosynthesis; 2.50A {Arabidopsis thaliana}

Probab=98.01  E-value=9.5e-06  Score=86.36  Aligned_cols=76  Identities=18%  Similarity=0.337  Sum_probs=58.4

Q ss_pred             cccEEEecCCCC-CCCCcceeEEEeCCCCHHhHhCCCCC-----------CCEEEEECCeecCCCCHHHHHHHHHhc-CC
Q psy1156         589 GLGFTIVGGKDS-PRGAIGIFIKSILDNGQAAEDGRLKE-----------GDEILAINGQVCHDLTHLEAISLFKTI-KN  655 (671)
Q Consensus       589 ~LGfsL~Gg~ds-~~g~~GVfIssV~pgSpAaraGrLr~-----------GDrILeVNG~sV~~lSheEAV~lLK~s-g~  655 (671)
                      .||+.+...... ..+..|++|..|.++|||+++| |++           ||+|++|||++|.  +..++..+|... +.
T Consensus       234 ~lGi~~~~~~~~~~~~~~Gv~V~~V~~~spA~~AG-l~~~~~~~~~~l~~GDvI~~ing~~v~--~~~dl~~~l~~~~~g  310 (348)
T 3qo6_A          234 ILGIKFAPDQSVEQLGVSGVLVLDAPPSGPAGKAG-LQSTKRDGYGRLVLGDIITSVNGTKVS--NGSDLYRILDQCKVG  310 (348)
T ss_dssp             ECCCEECCTTTTTTTTCSSEEEEECCSSSHHHHHT-CCCCEECSSSCEECCCEECEETTBCCS--SSHHHHHHHTTCCTT
T ss_pred             ecCcEEccchhhhhcCCceEEEEEecCCChHHHcC-CccccccccCCCCCCCEEEEECCEEeC--CHHHHHHHHHhCCCc
Confidence            456665432111 1123599999999999999999 999           9999999999998  558888888653 34


Q ss_pred             CcEEEEEEeCCC
Q psy1156         656 GSISLHICRRLK  667 (671)
Q Consensus       656 ~~VtL~V~Rr~~  667 (671)
                      ++|.|+|.|+.+
T Consensus       311 ~~v~l~v~R~g~  322 (348)
T 3qo6_A          311 DEVTVEVLRGDH  322 (348)
T ss_dssp             CEEEEEEECSSS
T ss_pred             CEEEEEEEECCE
Confidence            689999999764

>4fgm_A Aminopeptidase N family protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, peptidase_M61, PDZ; 2.39A {Idiomarina loihiensis L2TR}

Probab=97.99  E-value=6.7e-06  Score=93.84  Aligned_cols=70  Identities=19%  Similarity=0.339  Sum_probs=55.1

Q ss_pred             CcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhc-CCCcEEEEEEeCC
Q psy1156         588 KGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTI-KNGSISLHICRRL  666 (671)
Q Consensus       588 ~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~s-g~~~VtL~V~Rr~  666 (671)
                      ..||+.+....      .|++|..|.++|||+++| |++||+|++|||..|.....   ..+|+.. +...|.|+|.|+.
T Consensus       485 ~~lG~~~~~~~------~gv~V~~V~~~spA~~AG-L~~GD~I~aInG~~v~~~~l---~~~l~~~~~g~~v~l~v~R~g  554 (597)
T 4fgm_A          485 VNFGAKYKASP------QGLDVLNVYHDESAYHAG-LSAGDKIIAIDHLQATEQSV---KRILERYIPGDTVTIHAFRRD  554 (597)
T ss_dssp             CCCSEEEEEET------TEEEEEEECTTSHHHHHT-CCTTCEEEEETTEECCTTTH---HHHHTTCCTTCEEEEEEEETT
T ss_pred             cccceEEeccC------CeEEEEEeCCCChHHHCC-CCCCCEEEEECCEECCHHHH---HHHHHhcCCCCEEEEEEEECC
Confidence            47888876432      379999999999999999 99999999999999964444   4445442 3468999999976


Q ss_pred             C
Q psy1156         667 K  667 (671)
Q Consensus       667 ~  667 (671)
                      +
T Consensus       555 ~  555 (597)
T 4fgm_A          555 E  555 (597)
T ss_dssp             E
T ss_pred             E
Confidence            4

>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation, binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4 b.47.1.1

Probab=97.98  E-value=1.1e-05  Score=85.02  Aligned_cols=58  Identities=26%  Similarity=0.443  Sum_probs=52.4

Q ss_pred             cceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcCCCcEEEEEEeCCC
Q psy1156         605 IGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKNGSISLHICRRLK  667 (671)
Q Consensus       605 ~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg~~~VtL~V~Rr~~  667 (671)
                      .|++|.+|.++|||+++| |++||+|++|||++|.  +..++..+|+. + ..|.|+|.|+.+
T Consensus       256 ~gv~V~~V~~~spA~~aG-l~~GDvI~~ing~~v~--~~~~l~~~l~~-~-~~v~l~v~R~g~  313 (325)
T 1lcy_A          256 HGVLIHKVILGSPAHRAG-LRPGDVILAIGEQMVQ--NAEDVYEAVRT-Q-SQLAVQIRRGRE  313 (325)
T ss_dssp             SCEEEEEECTTSHHHHHT-CCTTCEEEEETTEECC--SHHHHHHHHTT-C-SSEEEEEEETTE
T ss_pred             CCeEEEEeCcCChHHHCC-CCCCCEEEEECCEEcC--CHHHHHHHHhC-C-CeEEEEEEECCE
Confidence            589999999999999999 9999999999999998  67888888876 3 689999999754

>2zpm_A Regulator of sigma E protease; metalloproteinase, membrane protein, PDZ domain, hydrolase, inner membrane, membrane, metal-binding; HET: MLY MSE; 0.98A {Escherichia coli} PDB: 3id2_A 3id3_A 3id4_A

Probab=97.97  E-value=8.9e-06  Score=69.35  Aligned_cols=59  Identities=24%  Similarity=0.343  Sum_probs=49.0

Q ss_pred             cEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHh-cCCCeEEEEEEeCCcc
Q psy1156         419 GFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIIS-SGPLNMDLLISRTSLK  480 (671)
Q Consensus       419 GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~-~~g~~V~L~V~R~~~~  480 (671)
                      .++|..|.+++||+++| |++||+|++|||+.+..  ..++...+. ..+..+.|+|.|++..
T Consensus         5 ~~~V~~v~~~spA~~aG-l~~GD~I~~ing~~v~~--~~~~~~~l~~~~g~~v~l~v~R~g~~   64 (91)
T 2zpm_A            5 EPVLENVQPNSAASXAG-LQAGDRIVXVDGQPLTQ--WVTFVMLVRDNPGXSLALEIERQGSP   64 (91)
T ss_dssp             -CBCSEECTTSHHHHTT-CCTTCEEEEETTEECCC--HHHHHHHHHHCTTCCEEEEEEETTEE
T ss_pred             CeEEEEECCCChHHhcC-CCCCCEEEEECCeEcCC--HHHHHHHHhcCCCCeEEEEEEECCeE
Confidence            46788999999999999 99999999999999975  466766666 3467899999997753

>3k50_A Putative S41 protease; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.00A {Bacteroides fragilis nctc 9343}

Probab=97.94  E-value=7.1e-06  Score=89.48  Aligned_cols=74  Identities=19%  Similarity=0.339  Sum_probs=56.8

Q ss_pred             CcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcCCCcEEEEEEeCCC
Q psy1156         588 KGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKNGSISLHICRRLK  667 (671)
Q Consensus       588 ~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg~~~VtL~V~Rr~~  667 (671)
                      .++||.+....+.. ....++|..|.++|||+++| |++||+|++|||++|.++.   +..+|+. +...|.|.|.|...
T Consensus        74 ~G~~~~l~~~~~~~-~~~~~~V~~V~~gsPA~~AG-L~~GD~I~~InG~~v~~~~---~~~~l~~-~g~~v~l~v~R~g~  147 (403)
T 3k50_A           74 YGFDYTLYKVLDND-TAYNALISYVVPGSPAEEAG-LQRGHWIMMMNGDYITKKV---ESELLQG-STRQLQIGVYKEVV  147 (403)
T ss_dssp             CSEEEEEEECTTCS-SCEEEEEEEECTTSHHHHTT-CCTTCEEEEETTBCBCTTT---GGGGTSC-SCEEEEEEEEEEEC
T ss_pred             cceEEEEEEcCCCC-cceeEEEEEeCCCChHHHcC-CCCCCEEEEECCEEccchh---HHHHhhC-CCCEEEEEEEeCCc
Confidence            56777776443211 11247899999999999999 9999999999999998775   5566666 44679999988754

>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A* 1sot_A 1soz_A 1vcw_A 2r3y_A

Probab=97.91  E-value=4e-06  Score=88.03  Aligned_cols=60  Identities=20%  Similarity=0.324  Sum_probs=52.4

Q ss_pred             CcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHh--cCCCeEEEEEEeCCcc
Q psy1156         418 GGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIIS--SGPLNMDLLISRTSLK  480 (671)
Q Consensus       418 ~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~--~~g~~V~L~V~R~~~~  480 (671)
                      .|++|..|.+++||+++| |++||+|++|||+.+..  ..++..+|.  ..+..+.|+|.|++..
T Consensus       244 ~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~--~~~l~~~l~~~~~g~~v~l~v~R~g~~  305 (318)
T 1te0_A          244 QGIVVNEVSPDGPAANAG-IQVNDLIISVDNKPAIS--ALETMDQVAEIRPGSVIPVVVMRDDKQ  305 (318)
T ss_dssp             CCEEEEEECTTSTTTTTC-CCTTCCEEEETTEECCC--HHHHHHHHHTSCTTCEEEEEEESSSCE
T ss_pred             CcEEEEEeCCCChHHHCC-CCCCCEEEEECCEEcCC--HHHHHHHHHhcCCCCEEEEEEEECCEE
Confidence            689999999999999999 99999999999999975  466667776  3578999999998764

>4fgm_A Aminopeptidase N family protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, peptidase_M61, PDZ; 2.39A {Idiomarina loihiensis L2TR}

Probab=97.90  E-value=1.9e-05  Score=90.06  Aligned_cols=72  Identities=18%  Similarity=0.183  Sum_probs=58.4

Q ss_pred             CCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHh--cCCCeEEEEEEe
Q psy1156         399 NEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIIS--SGPLNMDLLISR  476 (671)
Q Consensus       399 ~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~--~~g~~V~L~V~R  476 (671)
                      ...||+.+....       .|++|..|.+||||+++| |++||+|++|||..|...   +...++.  ..+..|.|+|.|
T Consensus       484 ~~~lG~~~~~~~-------~gv~V~~V~~~spA~~AG-L~~GD~I~aInG~~v~~~---~l~~~l~~~~~g~~v~l~v~R  552 (597)
T 4fgm_A          484 RVNFGAKYKASP-------QGLDVLNVYHDESAYHAG-LSAGDKIIAIDHLQATEQ---SVKRILERYIPGDTVTIHAFR  552 (597)
T ss_dssp             SCCCSEEEEEET-------TEEEEEEECTTSHHHHHT-CCTTCEEEEETTEECCTT---THHHHHTTCCTTCEEEEEEEE
T ss_pred             ccccceEEeccC-------CeEEEEEeCCCChHHHCC-CCCCCEEEEECCEECCHH---HHHHHHHhcCCCCEEEEEEEE
Confidence            468999887532       589999999999999999 999999999999999533   3444454  367899999999


Q ss_pred             CCccc
Q psy1156         477 TSLKK  481 (671)
Q Consensus       477 ~~~~~  481 (671)
                      ++...
T Consensus       553 ~g~~~  557 (597)
T 4fgm_A          553 RDELM  557 (597)
T ss_dssp             TTEEE
T ss_pred             CCEEE
Confidence            87643

>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A

Probab=97.90  E-value=2e-05  Score=86.99  Aligned_cols=60  Identities=22%  Similarity=0.286  Sum_probs=52.5

Q ss_pred             cceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhc-CCCcEEEEEEeCCC
Q psy1156         605 IGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTI-KNGSISLHICRRLK  667 (671)
Q Consensus       605 ~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~s-g~~~VtL~V~Rr~~  667 (671)
                      .|++|..|.++|||+++| |++||+|++|||++|.  +..++..+|... ....|.|+|.|+.+
T Consensus       282 ~G~~V~~V~~~spA~~aG-L~~GDvI~~vnG~~v~--~~~~l~~~l~~~~~g~~v~l~V~R~g~  342 (451)
T 3pv2_A          282 QGALVSQVNPNSPAELAG-LKAGDIITQINDTKIT--QATQVKTTISLLRVGSTVKIIVERDNK  342 (451)
T ss_dssp             CCEEEEEECTTSHHHHHT-CCTTCEEEEETTEECC--SHHHHHHHHHTSCTTCEEEEEEEETTE
T ss_pred             ceEEEEecCCCChHHHcC-CCCCCEEEEECCEEcC--CHHHHHHHHHhcCCCCEEEEEEEECCE
Confidence            589999999999999999 9999999999999998  668888887753 34689999999764

>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics, PSI, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A

Probab=97.87  E-value=2.1e-05  Score=82.62  Aligned_cols=73  Identities=16%  Similarity=0.289  Sum_probs=56.8

Q ss_pred             CcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHh--cCCCeEEEEEEe-
Q psy1156         400 EELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIIS--SGPLNMDLLISR-  476 (671)
Q Consensus       400 ~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~--~~g~~V~L~V~R-  476 (671)
                      ..||+.+..... .    .|++|..|.+++||+++| |++||+|++|||+.+..+  .++...+.  ..+..+.|+|.| 
T Consensus       229 ~~lGi~~~~~~~-~----~g~~V~~v~~~spA~~aG-l~~GD~I~~ing~~v~~~--~~l~~~l~~~~~g~~v~l~v~R~  300 (324)
T 1y8t_A          229 ASLGVQVTNDKD-T----LGAKIVEVVAGGAAANAG-VPKGVVVTKVDDRPINSA--DALVAAVRSKAPGATVALTFQDP  300 (324)
T ss_dssp             EECCEEEESCSS-S----SSEEEEEECTTSTTTTTT-CCTTCEEEEETTEECCSH--HHHHHHHHTSCTTCEEEEEEECS
T ss_pred             cccceEeeeccC-C----CceEEEEECCCChHHHcC-CCCCCEEEEECCEECCCH--HHHHHHHHhcCCCCEEEEEEEEC
Confidence            355666553211 1    689999999999999999 999999999999999754  55666665  357889999999 


Q ss_pred             CCcc
Q psy1156         477 TSLK  480 (671)
Q Consensus       477 ~~~~  480 (671)
                      ++..
T Consensus       301 ~g~~  304 (324)
T 1y8t_A          301 SGGS  304 (324)
T ss_dssp             SCCE
T ss_pred             CCCE
Confidence            7653

>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A

Probab=97.85  E-value=2.3e-05  Score=85.98  Aligned_cols=60  Identities=28%  Similarity=0.409  Sum_probs=51.6

Q ss_pred             cceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhc-CCCcEEEEEEeCCC
Q psy1156         605 IGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTI-KNGSISLHICRRLK  667 (671)
Q Consensus       605 ~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~s-g~~~VtL~V~Rr~~  667 (671)
                      .|++|..|.++|||+++| |++||+|++|||++|.  +..++..+|... ....|.|+|.|+.+
T Consensus       263 ~G~~V~~V~~~spA~~aG-L~~GD~I~~vnG~~v~--~~~~l~~~l~~~~~g~~v~l~v~R~g~  323 (436)
T 4a8c_A          263 RGAFVSEVLPGSGSAKAG-VKAGDIITSLNGKPLN--SFAELRSRIATTEPGTKVKLGLLRNGK  323 (436)
T ss_pred             cceEEEEECCCChHHHCC-CCCCCEEEEECCEECC--CHHHHHHHHHhcCCCCEEEEEEEECCE
Confidence            589999999999999999 9999999999999998  567777777653 24689999998764

>3k50_A Putative S41 protease; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.00A {Bacteroides fragilis nctc 9343}

Probab=97.84  E-value=1.5e-05  Score=86.89  Aligned_cols=75  Identities=15%  Similarity=0.274  Sum_probs=57.6

Q ss_pred             CCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhcCCCeEEEEEEeCC
Q psy1156         399 NEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISRTS  478 (671)
Q Consensus       399 ~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~~g~~V~L~V~R~~  478 (671)
                      ..++||.+....... .. ..++|..|.+||||+++| |++||+|++|||+.|.++.   +..+++..+..|.|+|.|.+
T Consensus        73 ~~G~~~~l~~~~~~~-~~-~~~~V~~V~~gsPA~~AG-L~~GD~I~~InG~~v~~~~---~~~~l~~~g~~v~l~v~R~g  146 (403)
T 3k50_A           73 SYGFDYTLYKVLDND-TA-YNALISYVVPGSPAEEAG-LQRGHWIMMMNGDYITKKV---ESELLQGSTRQLQIGVYKEV  146 (403)
T ss_dssp             BCSEEEEEEECTTCS-SC-EEEEEEEECTTSHHHHTT-CCTTCEEEEETTBCBCTTT---GGGGTSCSCEEEEEEEEEEE
T ss_pred             ccceEEEEEEcCCCC-cc-eeEEEEEeCCCChHHHcC-CCCCCEEEEECCEEccchh---HHHHhhCCCCEEEEEEEeCC
Confidence            356777766543211 00 148899999999999999 9999999999999998875   45566666778999999876


Q ss_pred             c
Q psy1156         479 L  479 (671)
Q Consensus       479 ~  479 (671)
                      .
T Consensus       147 ~  147 (403)
T 3k50_A          147 V  147 (403)
T ss_dssp             C
T ss_pred             c
Confidence            5

>3qo6_A Protease DO-like 1, chloroplastic; protease, HTRA, PH-sensor, hydrolase, photosynthesis; 2.50A {Arabidopsis thaliana}

Probab=97.76  E-value=3e-05  Score=82.49  Aligned_cols=61  Identities=28%  Similarity=0.350  Sum_probs=52.5

Q ss_pred             CcEEEEEEcCCChhhhcCCCCC-----------CCEEEccCCeeccCCCHHHHHHHHh--cCCCeEEEEEEeCCccc
Q psy1156         418 GGFVVAHIVSGGLAEKEGCLEL-----------GDEIISVNGQRLRGLTMTQAKSIIS--SGPLNMDLLISRTSLKK  481 (671)
Q Consensus       418 ~GI~Vs~V~pGspA~raG~L~~-----------GD~IlaVNG~~V~~~s~~~av~~L~--~~g~~V~L~V~R~~~~~  481 (671)
                      .|++|..|.++|||+++| |++           ||+|++|||+.|.++  .++...|.  ..+..|.|+|.|+++..
T Consensus       251 ~Gv~V~~V~~~spA~~AG-l~~~~~~~~~~l~~GDvI~~ing~~v~~~--~dl~~~l~~~~~g~~v~l~v~R~g~~~  324 (348)
T 3qo6_A          251 SGVLVLDAPPSGPAGKAG-LQSTKRDGYGRLVLGDIITSVNGTKVSNG--SDLYRILDQCKVGDEVTVEVLRGDHKE  324 (348)
T ss_dssp             SSEEEEECCSSSHHHHHT-CCCCEECSSSCEECCCEECEETTBCCSSS--HHHHHHHTTCCTTCEEEEEEECSSSEE
T ss_pred             ceEEEEEecCCChHHHcC-CccccccccCCCCCCCEEEEECCEEeCCH--HHHHHHHHhCCCcCEEEEEEEECCEEE
Confidence            689999999999999999 999           999999999999865  56666664  35789999999987643

>2hga_A Conserved protein MTH1368; GFT structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: b.36.1.6

Probab=97.63  E-value=5.1e-05  Score=69.62  Aligned_cols=57  Identities=25%  Similarity=0.259  Sum_probs=48.6

Q ss_pred             CcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHh--cCCCeEEEEEEeCCc
Q psy1156         418 GGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIIS--SGPLNMDLLISRTSL  479 (671)
Q Consensus       418 ~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~--~~g~~V~L~V~R~~~  479 (671)
                      .|++|..|.+++||+++  |++||+|++|||+.+..+  .++...+.  ..+..+.|+| |.+.
T Consensus        25 ~gv~V~~V~~~spA~~a--L~~GD~Il~InG~~v~~~--~dl~~~l~~~~~g~~v~l~V-R~g~   83 (125)
T 2hga_A           25 DGVQIDSVVPGSPASKV--LTPGLVIESINGMPTSNL--TTYSAALKTISVGEVINITT-DQGT   83 (125)
T ss_dssp             CCEEEEEECSSSGGGGT--SCTTCEEEEETTEECSSH--HHHHHHHTTCCTTCEEEEEE-TTEE
T ss_pred             CceEEEEECCCChHHHh--cCCCCEEEEECCEEcCCH--HHHHHHHHhcCCCCEEEEEE-ECCE
Confidence            68999999999999988  999999999999999754  56666666  3577899999 8765

>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB: 3nzi_A 2ytw_A 2joa_A

Probab=97.59  E-value=9e-06  Score=85.82  Aligned_cols=58  Identities=26%  Similarity=0.448  Sum_probs=0.0

Q ss_pred             cceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcCCCcEEEEEEeCCC
Q psy1156         605 IGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKNGSISLHICRRLK  667 (671)
Q Consensus       605 ~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg~~~VtL~V~Rr~~  667 (671)
                      .|++|..|.++|||+++| |++||+|++|||+++.  ++.++..+|+. + ..|.|+|.|+.+
T Consensus       254 ~g~~V~~v~~~spA~~aG-l~~GD~I~~ing~~v~--~~~~~~~~l~~-~-~~v~l~v~R~g~  311 (332)
T 3num_A          254 SGAYIIEVIPDTPAEAGG-LKENDVIISINGQSVV--SANDVSDVIKR-E-STLNMVVRRGNE  311 (332)
T ss_dssp             ---------------------------------------------------------------
T ss_pred             CceEEEEeccCCChHHcC-CCCCCEEEEECCEECC--CHHHHHHHHhC-C-CeEEEEEEECCE
Confidence            489999999999999999 9999999999999997  66778888875 3 679999998764

>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation, binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4 b.47.1.1

Probab=97.59  E-value=0.00011  Score=77.45  Aligned_cols=59  Identities=19%  Similarity=0.370  Sum_probs=52.3

Q ss_pred             CcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhcCCCeEEEEEEeCCcc
Q psy1156         418 GGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISRTSLK  480 (671)
Q Consensus       418 ~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~~g~~V~L~V~R~~~~  480 (671)
                      .|++|..|.++|||+++| |++||+|++|||+.+..  ..+...+++. +..+.|+|.|++..
T Consensus       256 ~gv~V~~V~~~spA~~aG-l~~GDvI~~ing~~v~~--~~~l~~~l~~-~~~v~l~v~R~g~~  314 (325)
T 1lcy_A          256 HGVLIHKVILGSPAHRAG-LRPGDVILAIGEQMVQN--AEDVYEAVRT-QSQLAVQIRRGRET  314 (325)
T ss_dssp             SCEEEEEECTTSHHHHHT-CCTTCEEEEETTEECCS--HHHHHHHHTT-CSSEEEEEEETTEE
T ss_pred             CCeEEEEeCcCChHHHCC-CCCCCEEEEECCEEcCC--HHHHHHHHhC-CCeEEEEEEECCEE
Confidence            689999999999999999 99999999999999974  5677777874 67899999998764

>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A

Probab=97.39  E-value=4e-05  Score=84.47  Aligned_cols=60  Identities=28%  Similarity=0.431  Sum_probs=51.1

Q ss_pred             cceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhc-CCCcEEEEEEeCCC
Q psy1156         605 IGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTI-KNGSISLHICRRLK  667 (671)
Q Consensus       605 ~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~s-g~~~VtL~V~Rr~~  667 (671)
                      .|++|..|.++|||+++| |++||+|++|||++|..  ..++..+|... ....|.|+|.|+.+
T Consensus       286 ~G~~V~~V~~gspA~~AG-L~~GDvI~~inG~~v~~--~~~l~~~l~~~~~g~~v~l~v~R~g~  346 (448)
T 1ky9_A          286 RGAFVSQVLPNSSAAKAG-IKAGDVITSLNGKPISS--FAALRAQVGTMPVGSKLTLGLLRDGK  346 (448)
T ss_dssp             CSEECCCCTTCSSSTTTT-CCTTCEECBSSSSBCCS--SHHHHHHTTSSBTTCCCEEEEESSSC
T ss_pred             CceEEEEeccCCHHHHcC-CCCCCEEEEECCEEcCC--HHHHHHHHHhcCCCCEEEEEEEECCE
Confidence            489999999999999999 99999999999999984  47777777652 24679999988754

>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB: 3nzi_A 2ytw_A 2joa_A

Probab=97.27  E-value=4e-05  Score=80.89  Aligned_cols=60  Identities=23%  Similarity=0.398  Sum_probs=0.0

Q ss_pred             CcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhcCCCeEEEEEEeCCccc
Q psy1156         418 GGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISRTSLKK  481 (671)
Q Consensus       418 ~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~~g~~V~L~V~R~~~~~  481 (671)
                      .|++|..|.++|||+++| |++||+|++|||+.+..+  .++..+++. +..+.|+|.|.++..
T Consensus       254 ~g~~V~~v~~~spA~~aG-l~~GD~I~~ing~~v~~~--~~~~~~l~~-~~~v~l~v~R~g~~~  313 (332)
T 3num_A          254 SGAYIIEVIPDTPAEAGG-LKENDVIISINGQSVVSA--NDVSDVIKR-ESTLNMVVRRGNEDI  313 (332)
T ss_dssp             ----------------------------------------------------------------
T ss_pred             CceEEEEeccCCChHHcC-CCCCCEEEEECCEECCCH--HHHHHHHhC-CCeEEEEEEECCEEE
Confidence            689999999999999999 999999999999999643  455566663 678999999987643

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=97.24  E-value=0.00043  Score=82.64  Aligned_cols=70  Identities=10%  Similarity=0.045  Sum_probs=58.1

Q ss_pred             CcccEEEecCCCCCCCCcceeEEEeCCC--------CHHhHhC-CCCCCCEEEEECCeecCCCCHHHHHHHHHhcCCCcE
Q psy1156         588 KGLGFTIVGGKDSPRGAIGIFIKSILDN--------GQAAEDG-RLKEGDEILAINGQVCHDLTHLEAISLFKTIKNGSI  658 (671)
Q Consensus       588 ~~LGfsL~Gg~ds~~g~~GVfIssV~pg--------SpAaraG-rLr~GDrILeVNG~sV~~lSheEAV~lLK~sg~~~V  658 (671)
                      .++|+.+.-..      .+++|..|.++        |||+++| .|+ ||+|++|||+++.++.  +++.+|+......|
T Consensus       737 ~g~G~~~~~~~------~~~~v~~v~~~~~~~~~~~spa~~ag~~l~-GD~I~~i~g~~~~~~~--~~~~~~~~~~g~~v  807 (1045)
T 1k32_A          737 GRIACDFKLDG------DHYVVAKAYAGDYSNEGEKSPIFEYGIDPT-GYLIEDIDGETVGAGS--NIYRVLSEKAGTSA  807 (1045)
T ss_dssp             CBCSEEEEEET------TEEEEEEECBSCTTSTTCBCGGGGGTCCCT-TCEEEEETTEECBTTB--CHHHHHHTTTTSEE
T ss_pred             ceecEEEEEeC------CEEEEEEecCCCcccccCCChHHHCCCCcC-CCEEEEECCEEccchh--hHHHhhcCCCCCEE
Confidence            57888886422      37899999998        9999999 499 9999999999998765  78888887655679


Q ss_pred             EEEEEeCC
Q psy1156         659 SLHICRRL  666 (671)
Q Consensus       659 tL~V~Rr~  666 (671)
                      .|+|.|..
T Consensus       808 ~l~v~r~~  815 (1045)
T 1k32_A          808 RIRLSGKG  815 (1045)
T ss_dssp             EEEEECSS
T ss_pred             EEEEECCC
Confidence            99998865

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=96.87  E-value=0.0019  Score=77.14  Aligned_cols=70  Identities=14%  Similarity=0.149  Sum_probs=57.7

Q ss_pred             CCcccEEEeeecCCCCCCcCcEEEEEEcCC--------ChhhhcCC-CCCCCEEEccCCeeccCCCHHHHHHHHh-cCCC
Q psy1156         399 NEELGIYIAKIKNSSEGNIGGFVVAHIVSG--------GLAEKEGC-LELGDEIISVNGQRLRGLTMTQAKSIIS-SGPL  468 (671)
Q Consensus       399 ~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pG--------spA~raG~-L~~GD~IlaVNG~~V~~~s~~~av~~L~-~~g~  468 (671)
                      .+++|+.+.-..       .+++|..|.+|        +||+++|. |+ ||+|++|||+.+.++.  ++..+|+ ..+.
T Consensus       736 ~~g~G~~~~~~~-------~~~~v~~v~~~~~~~~~~~spa~~ag~~l~-GD~I~~i~g~~~~~~~--~~~~~~~~~~g~  805 (1045)
T 1k32_A          736 SGRIACDFKLDG-------DHYVVAKAYAGDYSNEGEKSPIFEYGIDPT-GYLIEDIDGETVGAGS--NIYRVLSEKAGT  805 (1045)
T ss_dssp             CCBCSEEEEEET-------TEEEEEEECBSCTTSTTCBCGGGGGTCCCT-TCEEEEETTEECBTTB--CHHHHHHTTTTS
T ss_pred             cceecEEEEEeC-------CEEEEEEecCCCcccccCCChHHHCCCCcC-CCEEEEECCEEccchh--hHHHhhcCCCCC
Confidence            358898886432       67999999998        99999994 88 9999999999998875  5566666 5578


Q ss_pred             eEEEEEEeCC
Q psy1156         469 NMDLLISRTS  478 (671)
Q Consensus       469 ~V~L~V~R~~  478 (671)
                      .|.|+|.|.+
T Consensus       806 ~v~l~v~r~~  815 (1045)
T 1k32_A          806 SARIRLSGKG  815 (1045)
T ss_dssp             EEEEEEECSS
T ss_pred             EEEEEEECCC
Confidence            9999999976

>4fln_A Protease DO-like 2, chloroplastic; protease, DEG, PDZ, hydrolase; 2.80A {Arabidopsis thaliana}

Probab=96.76  E-value=0.0025  Score=71.89  Aligned_cols=61  Identities=18%  Similarity=0.207  Sum_probs=45.9

Q ss_pred             cceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCH--------HHHHHHHHhc-CCCcEEEEEEeCCC
Q psy1156         605 IGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTH--------LEAISLFKTI-KNGSISLHICRRLK  667 (671)
Q Consensus       605 ~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSh--------eEAV~lLK~s-g~~~VtL~V~Rr~~  667 (671)
                      .|++|..|.++|||++ + |++||+|++|||+.|.....        .....++... +.++|.|+|.|+.+
T Consensus       277 ~Gv~V~~V~~~spA~~-a-l~~GDvI~~idg~~V~~~g~~~~~~~~~~~l~~~v~~~~~Gd~v~l~v~R~Gk  346 (539)
T 4fln_A          277 EGVLVRRVEPTSDASK-V-LKEGDVIVSFDDLHVGCEGTVPFRSSERIAFRYLISQKFAGDIAEIGIIRAGE  346 (539)
T ss_dssp             BCEEEEEECTTSGGGG-T-CCTTCEEEEETTEECBSSSEEECSTTCEEETHHHHHTSCTTCEEEEEEEETTE
T ss_pred             CceeeecccCCChHHh-C-ccCCCEEEEECCEEeCcCCeeccccchhHHHHHHHHcCCCCCEEEEEEEECCE
Confidence            5999999999999985 5 99999999999999954221        1122333332 34789999999875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	671
d2cssa1	108	b.36.1.1 (A:8-115) Regulating synaptic membrane ex	4e-22
d2cssa1	108	b.36.1.1 (A:8-115) Regulating synaptic membrane ex	3e-13
d2fnea1	88	b.36.1.1 (A:1955-2042) Multiple PDZ domain protein	5e-22
d2fnea1	88	b.36.1.1 (A:1955-2042) Multiple PDZ domain protein	2e-10
d2csja1	104	b.36.1.1 (A:8-111) Tight junction protein ZO-2, Tj	6e-22
d2csja1	104	b.36.1.1 (A:8-111) Tight junction protein ZO-2, Tj	2e-11
d1rgra_	93	b.36.1.1 (A:) Synaptic protein PSD-95 {Rat (Rattus	2e-21
d1rgra_	93	b.36.1.1 (A:) Synaptic protein PSD-95 {Rat (Rattus	1e-10
d1i16a_	130	b.36.1.2 (A:) Interleukin 16 {Human (Homo sapiens)	3e-21
d1i16a_	130	b.36.1.2 (A:) Interleukin 16 {Human (Homo sapiens)	1e-09
d1t2ma1	92	b.36.1.1 (A:2-93) Afadin {Human (Homo sapiens) [Ta	3e-21
d1t2ma1	92	b.36.1.1 (A:2-93) Afadin {Human (Homo sapiens) [Ta	2e-11
d1wf8a1	94	b.36.1.1 (A:8-101) Neurabin-i {Human (Homo sapiens	3e-21
d1wf8a1	94	b.36.1.1 (A:8-101) Neurabin-i {Human (Homo sapiens	3e-11
d1wi4a1	96	b.36.1.1 (A:8-103) Syntaxin binding protein 4 {Mou	2e-20
d1wi4a1	96	b.36.1.1 (A:8-103) Syntaxin binding protein 4 {Mou	2e-09
d1x6da1	107	b.36.1.2 (A:8-114) Interleukin 16 {Human (Homo sap	2e-20
d1x6da1	107	b.36.1.2 (A:8-114) Interleukin 16 {Human (Homo sap	2e-09
d1ueqa_	123	b.36.1.1 (A:) Membrane associated guanylate kinase	3e-20
d1ueqa_	123	b.36.1.1 (A:) Membrane associated guanylate kinase	2e-09
d2fcfa1	96	b.36.1.1 (A:1148-1243) Multiple PDZ domain protein	5e-20
d2fcfa1	96	b.36.1.1 (A:1148-1243) Multiple PDZ domain protein	7e-13
d1um1a_	110	b.36.1.1 (A:) Hypothetical protein KIAA1849 {Human	6e-20
d1um1a_	110	b.36.1.1 (A:) Hypothetical protein KIAA1849 {Human	8e-10
d2f0aa1	92	b.36.1.1 (A:251-342) Segment polarity protein dish	7e-20
d2f0aa1	92	b.36.1.1 (A:251-342) Segment polarity protein dish	2e-09
d2fe5a1	92	b.36.1.1 (A:223-314) Synapse-associated protein 10	1e-19
d2fe5a1	92	b.36.1.1 (A:223-314) Synapse-associated protein 10	1e-10
d1n7ea_	95	b.36.1.1 (A:) Glutamate receptor-interacting prote	2e-19
d1n7ea_	95	b.36.1.1 (A:) Glutamate receptor-interacting prote	3e-11
d1ihja_	94	b.36.1.1 (A:) Inad {Fruit fly (Drosophila melanoga	3e-19
d1ihja_	94	b.36.1.1 (A:) Inad {Fruit fly (Drosophila melanoga	1e-12
d1uhpa_	107	b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human	6e-19
d1uhpa_	107	b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human	2e-08
d1wg6a_	127	b.36.1.1 (A:) Partitioning-defective 3-like protei	1e-18
d1wg6a_	127	b.36.1.1 (A:) Partitioning-defective 3-like protei	8e-12
d1tp5a1	102	b.36.1.1 (A:302-403) Synaptic protein PSD-95 {Rat	1e-18
d1tp5a1	102	b.36.1.1 (A:302-403) Synaptic protein PSD-95 {Rat	2e-08
d1wfva_	103	b.36.1.1 (A:) Membrane associated guanylate kinase	2e-18
d1wfva_	103	b.36.1.1 (A:) Membrane associated guanylate kinase	1e-08
d1m5za_	91	b.36.1.1 (A:) Glutamate receptor interacting prote	2e-18
d1m5za_	91	b.36.1.1 (A:) Glutamate receptor interacting prote	5e-10
d1p1da2	99	b.36.1.1 (A:115-213) Glutamate receptor interactin	2e-18
d1p1da2	99	b.36.1.1 (A:115-213) Glutamate receptor interactin	5e-12
d1qava_	90	b.36.1.1 (A:) Syntrophin {Mouse (Mus musculus) [Ta	3e-18
d1qava_	90	b.36.1.1 (A:) Syntrophin {Mouse (Mus musculus) [Ta	3e-10
d1ujda_	117	b.36.1.1 (A:) Hypothetical protein KIAA0559 {Human	4e-18
d1ujda_	117	b.36.1.1 (A:) Hypothetical protein KIAA0559 {Human	2e-11
d2h3la1	103	b.36.1.1 (A:1310-1412) Erbin {Human (Homo sapiens)	4e-18
d2h3la1	103	b.36.1.1 (A:1310-1412) Erbin {Human (Homo sapiens)	3e-09
d1ujua_	111	b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sap	5e-18
d1ujua_	111	b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sap	5e-10
d1whaa_	105	b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sap	6e-18
d1whaa_	105	b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sap	7e-09
d1x45a1	85	b.36.1.1 (A:8-92) Amyloid beta A4 precursor protei	1e-17
d1x45a1	85	b.36.1.1 (A:8-92) Amyloid beta A4 precursor protei	3e-11
d1uepa_	103	b.36.1.1 (A:) Membrane associated guanylate kinase	1e-17
d1uepa_	103	b.36.1.1 (A:) Membrane associated guanylate kinase	9e-09
d1ozia_	99	b.36.1.1 (A:) Phosphatase hPTP1e {Mouse (Mus muscu	1e-17
d1ozia_	99	b.36.1.1 (A:) Phosphatase hPTP1e {Mouse (Mus muscu	4e-10
d1x5ra1	99	b.36.1.1 (A:8-106) Glutamate receptor interacting	1e-17
d1x5ra1	99	b.36.1.1 (A:8-106) Glutamate receptor interacting	4e-14
d1rgwa_	85	b.36.1.1 (A:) Zasp (Cypher, Oracle 1) {Human (Homo	2e-17
d1rgwa_	85	b.36.1.1 (A:) Zasp (Cypher, Oracle 1) {Human (Homo	7e-09
d1wh1a_	124	b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human	3e-17
d1wh1a_	124	b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human	1e-09
d1x5qa1	97	b.36.1.1 (A:8-104) Scribble (KIAA0147) {Human (Hom	4e-17
d1x5qa1	97	b.36.1.1 (A:8-104) Scribble (KIAA0147) {Human (Hom	5e-09
d1g9oa_	91	b.36.1.1 (A:) Na+/H+ exchanger regulatory factor,	5e-17
d1g9oa_	91	b.36.1.1 (A:) Na+/H+ exchanger regulatory factor,	1e-08
d1ueza_	101	b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapien	5e-17
d1ueza_	101	b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapien	1e-07
d1v6ba_	118	b.36.1.1 (A:) Harmonin {Mouse (Mus musculus) [TaxI	9e-17
d1v6ba_	118	b.36.1.1 (A:) Harmonin {Mouse (Mus musculus) [TaxI	4e-11
d1rzxa_	98	b.36.1.1 (A:) GTPase-binding domain of the cell po	1e-16
d1rzxa_	98	b.36.1.1 (A:) GTPase-binding domain of the cell po	2e-11
d2cs5a1	106	b.36.1.1 (A:8-113) Tyrosine-protein phosphatase no	2e-16
d2cs5a1	106	b.36.1.1 (A:8-113) Tyrosine-protein phosphatase no	1e-09
d1v62a_	117	b.36.1.1 (A:) Glutamate receptor interacting prote	2e-16
d1v62a_	117	b.36.1.1 (A:) Glutamate receptor interacting prote	9e-11
d1w9ea1	85	b.36.1.1 (A:110-194) Syntenin 1 {Human (Homo sapie	5e-16
d1vb7a_	94	b.36.1.1 (A:) PDZ-LIM protein mystique {Mouse (Mus	7e-16
d1vb7a_	94	b.36.1.1 (A:) PDZ-LIM protein mystique {Mouse (Mus	2e-07
d1y7na1	79	b.36.1.1 (A:12-90) Amyloid beta A4 precursor prote	1e-15
d1y7na1	79	b.36.1.1 (A:12-90) Amyloid beta A4 precursor prote	2e-09
d1wf7a_	103	b.36.1.1 (A:) Enigma homolog ENH {Mouse (Mus muscu	2e-15
d1wf7a_	103	b.36.1.1 (A:) Enigma homolog ENH {Mouse (Mus muscu	5e-06
d1v5qa_	122	b.36.1.1 (A:) Glutamate receptor interacting prote	2e-15
d1v5qa_	122	b.36.1.1 (A:) Glutamate receptor interacting prote	2e-10
d1ufxa_	103	b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapien	2e-15
d1ufxa_	103	b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapien	4e-10
d1kwaa_	88	b.36.1.1 (A:) Cask/Lin-2 {Human (Homo sapiens) [Ta	2e-15
d1kwaa_	88	b.36.1.1 (A:) Cask/Lin-2 {Human (Homo sapiens) [Ta	4e-11
d1q3oa_	104	b.36.1.1 (A:) Shank1, PDZ domain {Rat (Rattus norv	2e-15
d1q3oa_	104	b.36.1.1 (A:) Shank1, PDZ domain {Rat (Rattus norv	4e-09
d1va8a1	100	b.36.1.1 (A:8-107) Maguk p55 subfamily member 5 {M	3e-15
d1va8a1	100	b.36.1.1 (A:8-107) Maguk p55 subfamily member 5 {M	3e-10
d2f5ya1	77	b.36.1.1 (A:19-95) Regulator of G-protein signalin	3e-15
d2f5ya1	77	b.36.1.1 (A:19-95) Regulator of G-protein signalin	4e-09
d1x5na1	101	b.36.1.1 (A:8-108) Harmonin {Human (Homo sapiens)	4e-15
d1x5na1	101	b.36.1.1 (A:8-108) Harmonin {Human (Homo sapiens)	5e-07
d1uewa_	114	b.36.1.1 (A:) Membrane associated guanylate kinase	5e-15
d1uewa_	114	b.36.1.1 (A:) Membrane associated guanylate kinase	1e-08
d1uita_	117	b.36.1.1 (A:) Discs large 5 protein KIAA0583 {Huma	6e-15
d1uf1a_	128	b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapien	8e-15
d1uf1a_	128	b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapien	5e-06
d1qaua_	112	b.36.1.1 (A:) Neuronal nitric oxide synthase, NNOS	2e-14
d1qaua_	112	b.36.1.1 (A:) Neuronal nitric oxide synthase, NNOS	7e-08
d1v5la_	103	b.36.1.1 (A:) Alpha-actinin-2 associated LIM prote	2e-14
d1v5la_	103	b.36.1.1 (A:) Alpha-actinin-2 associated LIM prote	1e-05
d1wifa_	126	b.36.1.1 (A:) hypothetical PDZ domain containing p	2e-14
d1wifa_	126	b.36.1.1 (A:) hypothetical PDZ domain containing p	6e-08
d1ujva_	96	b.36.1.1 (A:) Membrane associated guanylate kinase	2e-14
d1ujva_	96	b.36.1.1 (A:) Membrane associated guanylate kinase	4e-06
d1wi2a_	104	b.36.1.1 (A:) PDZ domain containing protein 11, Pd	2e-14
d1wi2a_	104	b.36.1.1 (A:) PDZ domain containing protein 11, Pd	1e-08
d1vaea_	111	b.36.1.1 (A:) Rhophilin-2 {Mouse (Mus musculus) [T	7e-12
d2z9ia1	88	b.36.1.4 (A:227-314) Protease PepD {Mycobacterium	5e-08
d1fc6a3	92	b.36.1.3 (A:157-248) Photosystem II D1 C-terminal	3e-07
d1r6ja_	82	b.36.1.1 (A:) Syntenin 1 {Human (Homo sapiens) [Ta	5e-07
d1r6ja_	82	b.36.1.1 (A:) Syntenin 1 {Human (Homo sapiens) [Ta	5e-05
d2i6va1	87	b.36.1.5 (A:219-305) General secretion pathway pro	3e-04
d1k32a1	91	b.36.1.3 (A:763-853) Tricorn protease {Archaeon Th	0.001

>d2cssa1 b.36.1.1 (A:8-115) Regulating synaptic membrane exocytosis protein 1, RIMS1 {Human (Homo sapiens) [TaxId: 9606]} Length = 108

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Regulating synaptic membrane exocytosis protein 1, RIMS1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.2 bits (221), Expect = 4e-22
 Identities = 23/91 (25%), Positives = 38/91 (41%), Gaps = 1/91 (1%)

Query: 575 TFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAIN 634
             +            LG  +VGGK +  G +G FI  +     A   G L+ GDE+L  N
Sbjct: 17  ILNKRTTMPKDSGALLGLKVVGGKMTDLGRLGAFITKVKKGSLADVVGHLRAGDEVLEWN 76

Query: 635 GQVCHDLTHLEAISLFKTIKNG-SISLHICR 664
           G+     T+ E  ++    K+   + + + R
Sbjct: 77  GKPLPGATNEEVYNIILESKSEPQVEIIVSR 107

>d2cssa1 b.36.1.1 (A:8-115) Regulating synaptic membrane exocytosis protein 1, RIMS1 {Human (Homo sapiens) [TaxId: 9606]} Length = 108

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Regulating synaptic membrane exocytosis protein 1, RIMS1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.2 bits (156), Expect = 3e-13
 Identities = 29/108 (26%), Positives = 53/108 (49%), Gaps = 8/108 (7%)

Query: 376 LSSENSEDSQEGQTMVRVNRR-----DFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGL 430
           ++ + S++       V +N+R     D    LG+ +   K +  G +G F+   +  G L
Sbjct: 1   VTWQPSKEGDRLIGRVILNKRTTMPKDSGALLGLKVVGGKMTDLGRLGAFI-TKVKKGSL 59

Query: 431 AEKEGCLELGDEIISVNGQRLRGLTMTQAKSII--SSGPLNMDLLISR 476
           A+  G L  GDE++  NG+ L G T  +  +II  S     +++++SR
Sbjct: 60  ADVVGHLRAGDEVLEWNGKPLPGATNEEVYNIILESKSEPQVEIIVSR 107

>d2fnea1 b.36.1.1 (A:1955-2042) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Multiple PDZ domain protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.4 bits (219), Expect = 5e-22
 Identities = 40/86 (46%), Positives = 60/86 (69%), Gaps = 3/86 (3%)

Query: 577 HTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQ 636
            +I  E+GP   GLGF+IVGG  SP G + I++K++   G A+EDGRLK GD+I+A+NGQ
Sbjct: 4   KSITLERGPD--GLGFSIVGGYGSPHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQ 61

Query: 637 VCHDLTHLEAISLFKTIKNGSISLHI 662
               +TH EA+++ K  K G+++L +
Sbjct: 62  SLEGVTHEEAVAILKRTK-GTVTLMV 86

>d2fnea1 b.36.1.1 (A:1955-2042) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Multiple PDZ domain protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.6 bits (134), Expect = 2e-10
 Identities = 24/76 (31%), Positives = 42/76 (55%), Gaps = 1/76 (1%)

Query: 399 NEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQ 458
            + LG  I     S  G++  +V   + + G A ++G L+ GD+II+VNGQ L G+T  +
Sbjct: 12  PDGLGFSIVGGYGSPHGDLPIYV-KTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEE 70

Query: 459 AKSIISSGPLNMDLLI 474
           A +I+      + L++
Sbjct: 71  AVAILKRTKGTVTLMV 86

>d2csja1 b.36.1.1 (A:8-111) Tight junction protein ZO-2, Tjp2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 104

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Tight junction protein ZO-2, Tjp2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 88.8 bits (220), Expect = 6e-22
 Identities = 26/96 (27%), Positives = 45/96 (46%), Gaps = 7/96 (7%)

Query: 577 HTIVFEKGPGKKGLGFTIVGGKDSPR---GAIGIFIKSILDNGQAAEDGRLKEGDEILAI 633
           +T+  +K   + G G  + GG+D+P    G   I I  +L  G A  DG L+E D ++ +
Sbjct: 9   YTVTLQKDSKR-GFGIAVSGGRDNPHFENGETSIVISDVLPGGPA--DGLLQENDRVVMV 65

Query: 634 NGQVCHDLTHLEAISLFKTIKNGSISLHICRRLKSK 669
           NG    D+ H  A+   +       ++ + R  K +
Sbjct: 66  NGTPMEDVLHSFAVQQLRKSGK-IAAIVVKRPRKVQ 100

>d2csja1 b.36.1.1 (A:8-111) Tight junction protein ZO-2, Tjp2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 104

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Tight junction protein ZO-2, Tjp2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 58.8 bits (142), Expect = 2e-11
 Identities = 18/97 (18%), Positives = 41/97 (42%), Gaps = 5/97 (5%)

Query: 382 EDSQEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIG--GFVVAHIVSGGLAEKEGCLEL 439
           E+    Q  V + +       GI ++  +++     G    V++ ++ GG A+  G L+ 
Sbjct: 2   EEVIWEQYTVTLQKDS-KRGFGIAVSGGRDNPHFENGETSIVISDVLPGGPAD--GLLQE 58

Query: 440 GDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISR 476
            D ++ VNG  +  +  + A   +        +++ R
Sbjct: 59  NDRVVMVNGTPMEDVLHSFAVQQLRKSGKIAAIVVKR 95

>d1rgra_ b.36.1.1 (A:) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 93

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synaptic protein PSD-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 87.3 bits (216), Expect = 2e-21
 Identities = 34/92 (36%), Positives = 48/92 (52%), Gaps = 5/92 (5%)

Query: 576 FHTIVFEKGPGKKGLGFTIVGGKDSPRGAI--GIFIKSILDNGQAAEDGRLKEGDEILAI 633
           +  I  E+G    GLGF+I GG D+P       IFI  I+  G AA+DGRL+  D IL +
Sbjct: 2   YEEITLERGNS--GLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFV 59

Query: 634 NGQVCHDLTHLEAISLFKTIKNGSISLHICRR 665
           N     ++TH  A+   K      + L++ RR
Sbjct: 60  NEVDVREVTHSAAVEALKEAG-SIVRLYVMRR 90

>d1rgra_ b.36.1.1 (A:) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 93

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synaptic protein PSD-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 56.1 bits (135), Expect = 1e-10
 Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 1/79 (1%)

Query: 399 NEELGIYIA-KIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMT 457
           N  LG  IA    N   G+     +  I+ GG A ++G L + D I+ VN   +R +T +
Sbjct: 11  NSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHS 70

Query: 458 QAKSIISSGPLNMDLLISR 476
            A   +      + L + R
Sbjct: 71  AAVEALKEAGSIVRLYVMR 89

>d1i16a_ b.36.1.2 (A:) Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Interleukin 16
domain: Interleukin 16
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.8 bits (217), Expect = 3e-21
 Identities = 30/97 (30%), Positives = 47/97 (48%), Gaps = 2/97 (2%)

Query: 575 TFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAIN 634
           T  T+  EK     GLGF++ GGK S  G   + I  I     + +   ++ GDEIL + 
Sbjct: 29  TVCTVTLEKMSA--GLGFSLEGGKGSLHGDKPLTINRIFKGAASEQSETVQPGDEILQLG 86

Query: 635 GQVCHDLTHLEAISLFKTIKNGSISLHICRRLKSKKT 671
           G     LT  EA ++ K + +G +++ I R+    K 
Sbjct: 87  GTAMQGLTRFEAWNIIKALPDGPVTIVIRRKSLQSKE 123

>d1i16a_ b.36.1.2 (A:) Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Interleukin 16
domain: Interleukin 16
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.3 bits (130), Expect = 1e-09
 Identities = 31/126 (24%), Positives = 56/126 (44%), Gaps = 5/126 (3%)

Query: 358 IPAYQNSSDYHSMMEISELSSENSEDSQEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNI 417
           +P   +S+D  S    S  S  + E + E         +  +  LG  +   K S  G+ 
Sbjct: 1   MPDLNSSTD--SAASASAASDVSVESTAEATVCTVTLEKM-SAGLGFSLEGGKGSLHGD- 56

Query: 418 GGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSII-SSGPLNMDLLISR 476
               +  I  G  +E+   ++ GDEI+ + G  ++GLT  +A +II +     + ++I R
Sbjct: 57  KPLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKALPDGPVTIVIRR 116

Query: 477 TSLKKS 482
            SL+  
Sbjct: 117 KSLQSK 122

>d1t2ma1 b.36.1.1 (A:2-93) Afadin {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Afadin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 86.5 bits (214), Expect = 3e-21
 Identities = 25/88 (28%), Positives = 48/88 (54%), Gaps = 4/88 (4%)

Query: 578 TIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQV 637
           T+  +K  G   +G +IV  K + +  +GI++KS++  G A  DGRL  GD++L+++G+ 
Sbjct: 7   TVTLKKQNG---MGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRS 63

Query: 638 CHDLTHLEAISLFKTIKNGSISLHICRR 665
              L+   A  L        ++L + ++
Sbjct: 64  LVGLSQERAAELMTRTS-SVVTLEVAKQ 90

>d1t2ma1 b.36.1.1 (A:2-93) Afadin {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Afadin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.3 bits (141), Expect = 2e-11
 Identities = 22/87 (25%), Positives = 48/87 (55%), Gaps = 2/87 (2%)

Query: 390 MVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQ 449
           ++ V  +     +G+ I   K + +  +G +V   +V GG A+ +G L  GD+++SV+G+
Sbjct: 5   IITVTLKK-QNGMGLSIVAAKGAGQDKLGIYV-KSVVKGGAADVDGRLAAGDQLLSVDGR 62

Query: 450 RLRGLTMTQAKSIISSGPLNMDLLISR 476
            L GL+  +A  +++     + L +++
Sbjct: 63  SLVGLSQERAAELMTRTSSVVTLEVAK 89

>d1wf8a1 b.36.1.1 (A:8-101) Neurabin-i {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Neurabin-i
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 86.5 bits (214), Expect = 3e-21
 Identities = 26/93 (27%), Positives = 47/93 (50%), Gaps = 6/93 (6%)

Query: 576 FHTIVFEKGPGKKGLGFTIVGGK---DSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILA 632
              +  EK     GLG +I+G     D+    +GIF+K++ + G A  DGR++  D+I+ 
Sbjct: 3   LFPVELEKDED--GLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVE 60

Query: 633 INGQVCHDLTHLEAISLFKTIKNGSISLHICRR 665
           ++G     +T   A ++ +  K G++   I R 
Sbjct: 61  VDGISLVGVTQNFAATVLRNTK-GNVRFVIGRE 92

>d1wf8a1 b.36.1.1 (A:8-101) Neurabin-i {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Neurabin-i
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.0 bits (140), Expect = 3e-11
 Identities = 21/80 (26%), Positives = 43/80 (53%), Gaps = 2/80 (2%)

Query: 399 NEELGIYIAKIKNSSEGNIG--GFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTM 456
            + LGI I  +   ++  +   G  V  +  GG A+++G +++ D+I+ V+G  L G+T 
Sbjct: 12  EDGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQ 71

Query: 457 TQAKSIISSGPLNMDLLISR 476
             A +++ +   N+  +I R
Sbjct: 72  NFAATVLRNTKGNVRFVIGR 91

>d1wi4a1 b.36.1.1 (A:8-103) Syntaxin binding protein 4 {Mouse (Mus musculus) [TaxId: 10090]} Length = 96

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntaxin binding protein 4
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 84.6 bits (209), Expect = 2e-20
 Identities = 27/99 (27%), Positives = 43/99 (43%), Gaps = 7/99 (7%)

Query: 569 PRSAICTFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGD 628
           P      F  I   K  G   LG  I+GG +   G   ++I  ++  G   +DGRLK GD
Sbjct: 2   PLDRDPAFRVITVTKETG---LGLKILGGINRNEGP-LVYIHEVIPGGDCYKDGRLKPGD 57

Query: 629 EILAINGQVCHDLTHLEAISLFKTIK---NGSISLHICR 664
           ++++IN +    ++  EA S+    K        +   R
Sbjct: 58  QLVSINKESMIGVSFEEAKSIITRAKLRSESPWEIAFIR 96

>d1wi4a1 b.36.1.1 (A:8-103) Syntaxin binding protein 4 {Mouse (Mus musculus) [TaxId: 10090]} Length = 96

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntaxin binding protein 4
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 52.6 bits (126), Expect = 2e-09
 Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 2/73 (2%)

Query: 391 VRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQR 450
            RV        LG+ I    N +EG      +  ++ GG   K+G L+ GD+++S+N + 
Sbjct: 9   FRVITVTKETGLGLKILGGINRNEG--PLVYIHEVIPGGDCYKDGRLKPGDQLVSINKES 66

Query: 451 LRGLTMTQAKSII 463
           + G++  +AKSII
Sbjct: 67  MIGVSFEEAKSII 79

>d1x6da1 b.36.1.2 (A:8-114) Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Interleukin 16
domain: Interleukin 16
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 84.2 bits (208), Expect = 2e-20
 Identities = 26/93 (27%), Positives = 52/93 (55%), Gaps = 3/93 (3%)

Query: 577 HTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQ 636
           H  +  K  G  GLGF++ GG D       I +  +  NG A+++G +++G+E+L+ING+
Sbjct: 10  HVTILHKEEGA-GLGFSLAGGADLENK--VITVHRVFPNGLASQEGTIQKGNEVLSINGK 66

Query: 637 VCHDLTHLEAISLFKTIKNGSISLHICRRLKSK 669
                TH +A+++ +  +    ++ + R+L  +
Sbjct: 67  SLKGTTHHDALAILRQAREPRQAVIVTRKLTPE 99

>d1x6da1 b.36.1.2 (A:8-114) Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Interleukin 16
domain: Interleukin 16
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.0 bits (127), Expect = 2e-09
 Identities = 21/91 (23%), Positives = 42/91 (46%), Gaps = 4/91 (4%)

Query: 386 EGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIIS 445
           +G  +  +++ +    LG  +A   +          V  +   GLA +EG ++ G+E++S
Sbjct: 7   DGIHVTILHKEE-GAGLGFSLAGGADLENK---VITVHRVFPNGLASQEGTIQKGNEVLS 62

Query: 446 VNGQRLRGLTMTQAKSIISSGPLNMDLLISR 476
           +NG+ L+G T   A +I+         +I  
Sbjct: 63  INGKSLKGTTHHDALAILRQAREPRQAVIVT 93

>d1ueqa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 123

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 84.6 bits (209), Expect = 3e-20
 Identities = 31/100 (31%), Positives = 53/100 (53%), Gaps = 6/100 (6%)

Query: 567 RRPRSAICTFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKE 626
           R       TF +   +K     G GFTI+GG +       + +KS++ +G AA+DG+++ 
Sbjct: 11  RDASQLKGTFLSTTLKKSN--MGFGFTIIGGDEPDEF---LQVKSVIPDGPAAQDGKMET 65

Query: 627 GDEILAINGQVCHDLTHLEAISLFKTIKNGS-ISLHICRR 665
           GD I+ IN       TH + + LF+++  G  ++L +CR 
Sbjct: 66  GDVIVYINEVCVLGHTHADVVKLFQSVPIGQSVNLVLCRG 105

>d1ueqa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 123

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.8 bits (129), Expect = 2e-09
 Identities = 21/98 (21%), Positives = 38/98 (38%), Gaps = 6/98 (6%)

Query: 381 SEDSQEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELG 440
            + SQ   T +    +  N   G  I               V  ++  G A ++G +E G
Sbjct: 11  RDASQLKGTFLSTTLKKSNMGFGFTIIGGDEPD----EFLQVKSVIPDGPAAQDGKMETG 66

Query: 441 DEIISVNGQRLRGLTMTQAKSIISSGPLN--MDLLISR 476
           D I+ +N   + G T      +  S P+   ++L++ R
Sbjct: 67  DVIVYINEVCVLGHTHADVVKLFQSVPIGQSVNLVLCR 104

>d2fcfa1 b.36.1.1 (A:1148-1243) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Multiple PDZ domain protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.0 bits (205), Expect = 5e-20
 Identities = 26/96 (27%), Positives = 45/96 (46%), Gaps = 8/96 (8%)

Query: 577 HTIVFEKGPGKKGLGFTIVGGKDSPRGAI------GIFIKSILDNGQAAEDGRLKEGDEI 630
             +   + P K  LG +IVGG+             GIFIK +L++  A ++G LK GD I
Sbjct: 3   RRVELWREPSK-SLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRI 61

Query: 631 LAINGQVCHDLTHLEAISLFKTIKNGSISLHICRRL 666
           + ++G    D +H +A+   +   N  +   +   +
Sbjct: 62  VEVDGMDLRDASHEQAVEAIRKAGN-PVVFMVQSII 96

>d2fcfa1 b.36.1.1 (A:1148-1243) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Multiple PDZ domain protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.6 bits (152), Expect = 7e-13
 Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 5/87 (5%)

Query: 395 RRDFNEELGIYIA-----KIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQ 449
            R+ ++ LGI I        + S+   + G  + H++    A K G L+ GD I+ V+G 
Sbjct: 8   WREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGM 67

Query: 450 RLRGLTMTQAKSIISSGPLNMDLLISR 476
            LR  +  QA   I      +  ++  
Sbjct: 68  DLRDASHEQAVEAIRKAGNPVVFMVQS 94

>d1um1a_ b.36.1.1 (A:) Hypothetical protein KIAA1849 {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1849
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.4 bits (206), Expect = 6e-20
 Identities = 29/89 (32%), Positives = 46/89 (51%), Gaps = 3/89 (3%)

Query: 577 HTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQ 636
            T+  E+GP   GLG  ++ G  +  GA G++I+++L    AA DGRL  GD IL +NG 
Sbjct: 10  FTVELERGPS--GLGMGLIDGMHTHLGAPGLYIQTLLPGSPAAADGRLSLGDRILEVNGS 67

Query: 637 VCHDLTHLEAISLFKTIKNGSISLHICRR 665
               L +L A+ L +      +   + + 
Sbjct: 68  SLLGLGYLRAVDLIRHGGK-KMRFLVAKS 95

>d1um1a_ b.36.1.1 (A:) Hypothetical protein KIAA1849 {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1849
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.6 bits (131), Expect = 8e-10
 Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 1/78 (1%)

Query: 399 NEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQ 458
              LG+ +    ++  G   G  +  ++ G  A  +G L LGD I+ VNG  L GL   +
Sbjct: 18  PSGLGMGLIDGMHTHLGA-PGLYIQTLLPGSPAAADGRLSLGDRILEVNGSSLLGLGYLR 76

Query: 459 AKSIISSGPLNMDLLISR 476
           A  +I  G   M  L+++
Sbjct: 77  AVDLIRHGGKKMRFLVAK 94

>d2f0aa1 b.36.1.1 (A:251-342) Segment polarity protein dishevelled homolog Dvl-2 {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 92

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Segment polarity protein dishevelled homolog Dvl-2
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 82.6 bits (204), Expect = 7e-20
 Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 4/90 (4%)

Query: 578 TIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQV 637
           T+          LG +IVG  +  RG  GI+I SI+  G  A DGR++ GD +L +N   
Sbjct: 4   TVTLNMEKYN-FLGISIVGQSNE-RGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDIN 61

Query: 638 CHDLTHLEAISLFKTI--KNGSISLHICRR 665
             ++++ +A+ + + I  K G I L + + 
Sbjct: 62  FENMSNDDAVRVLRDIVHKPGPIVLTVAKL 91

>d2f0aa1 b.36.1.1 (A:251-342) Segment polarity protein dishevelled homolog Dvl-2 {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 92

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Segment polarity protein dishevelled homolog Dvl-2
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 52.6 bits (126), Expect = 2e-09
 Identities = 19/86 (22%), Positives = 35/86 (40%), Gaps = 5/86 (5%)

Query: 395 RRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGL 454
             +    LGI I  +  S+E   GG  +  I+ GG    +G +E GD ++ VN      +
Sbjct: 8   NMEKYNFLGISI--VGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDINFENM 65

Query: 455 TMTQAKSIISSGPLNMD---LLISRT 477
           +   A  ++           L +++ 
Sbjct: 66  SNDDAVRVLRDIVHKPGPIVLTVAKL 91

>d2fe5a1 b.36.1.1 (A:223-314) Synapse-associated protein 102 {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synapse-associated protein 102
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.3 bits (203), Expect = 1e-19
 Identities = 33/93 (35%), Positives = 49/93 (52%), Gaps = 5/93 (5%)

Query: 575 TFHTIVFEKGPGKKGLGFTIVGGKDSPR--GAIGIFIKSILDNGQAAEDGRLKEGDEILA 632
           T   +   KGP  KGLGF+I GG  +    G   I+I  I++ G A +DGRL+ GD +LA
Sbjct: 1   TIMEVNLLKGP--KGLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLA 58

Query: 633 INGQVCHDLTHLEAISLFKTIKNGSISLHICRR 665
           +N     D+ H EA++  K      + L + + 
Sbjct: 59  VNNTNLQDVRHEEAVASLKNTS-DMVYLKVAKP 90

>d2fe5a1 b.36.1.1 (A:223-314) Synapse-associated protein 102 {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synapse-associated protein 102
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.5 bits (136), Expect = 1e-10
 Identities = 21/89 (23%), Positives = 44/89 (49%), Gaps = 1/89 (1%)

Query: 389 TMVRVNRRDFNEELGIYIAKIKNSSEG-NIGGFVVAHIVSGGLAEKEGCLELGDEIISVN 447
           T++ VN     + LG  IA    +          +  I+ GG A+K+G L++GD +++VN
Sbjct: 1   TIMEVNLLKGPKGLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVN 60

Query: 448 GQRLRGLTMTQAKSIISSGPLNMDLLISR 476
              L+ +   +A + + +    + L +++
Sbjct: 61  NTNLQDVRHEEAVASLKNTSDMVYLKVAK 89

>d1n7ea_ b.36.1.1 (A:) Glutamate receptor-interacting protein 1, GRIP1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 95

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor-interacting protein 1, GRIP1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 81.1 bits (200), Expect = 2e-19
 Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 6/93 (6%)

Query: 577 HTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQ 636
           +T+  ++  G   LG TI G ++       I I S+   G A   G +  GD ILAIN  
Sbjct: 5   YTVELKRYGG--PLGITISGTEEPFDP---IIISSLTKGGLAERTGAIHIGDRILAINSS 59

Query: 637 VCHDLTHLEAISLFKTIKNGSISLHICRRLKSK 669
                   EAI L +     +++L I ++  ++
Sbjct: 60  SLKGKPLSEAIHLLQMAG-ETVTLKIKKQTDAQ 91

>d1n7ea_ b.36.1.1 (A:) Glutamate receptor-interacting protein 1, GRIP1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 95

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor-interacting protein 1, GRIP1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 58.3 bits (141), Expect = 3e-11
 Identities = 22/86 (25%), Positives = 43/86 (50%), Gaps = 6/86 (6%)

Query: 391 VRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQR 450
           V + R      LGI I+     +E      +++ +  GGLAE+ G + +GD I+++N   
Sbjct: 7   VELKRY--GGPLGITIS----GTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSS 60

Query: 451 LRGLTMTQAKSIISSGPLNMDLLISR 476
           L+G  +++A  ++      + L I +
Sbjct: 61  LKGKPLSEAIHLLQMAGETVTLKIKK 86

>d1ihja_ b.36.1.1 (A:) Inad {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 94

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Inad
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 81.1 bits (200), Expect = 3e-19
 Identities = 33/91 (36%), Positives = 42/91 (46%), Gaps = 5/91 (5%)

Query: 577 HTIVFEKGPGKKGLGFTIVGGKDSPR---GAIGIFIKSILDNGQAAEDGRLKEGDEILAI 633
           H +  +K  GKK  G  IV G+          GIFIK I+ +  A   GRLK GD IL++
Sbjct: 5   HMVTLDK-TGKKSFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSL 63

Query: 634 NGQVCHDLTHLEAISLFKTIKNGSISLHICR 664
           NG+   + T    I L K      I L I  
Sbjct: 64  NGKDVRNSTEQAVIDLIKEAD-FKIELEIQT 93

>d1ihja_ b.36.1.1 (A:) Inad {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 94

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Inad
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 62.2 bits (151), Expect = 1e-12
 Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 3/89 (3%)

Query: 390 MVRVNRRDFNEELGIYIA--KIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVN 447
           MV +++    +  GI I   ++K+S      G  +  IV    A   G L++GD I+S+N
Sbjct: 6   MVTLDKTG-KKSFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLN 64

Query: 448 GQRLRGLTMTQAKSIISSGPLNMDLLISR 476
           G+ +R  T      +I      ++L I  
Sbjct: 65  GKDVRNSTEQAVIDLIKEADFKIELEIQT 93

>d1uhpa_ b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1095
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.4 bits (198), Expect = 6e-19
 Identities = 34/99 (34%), Positives = 52/99 (52%), Gaps = 8/99 (8%)

Query: 577 HTIVFEKGPGKKGLGFTIVGGKDSP-----RGAIGIFIKSILDNGQAAEDGRLKEGDEIL 631
            T+V  +  G   LGF I+GG+ S        + GIF+  I+D+G AA++G L+  D I+
Sbjct: 10  LTLVLHRDSG--SLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRII 67

Query: 632 AINGQVCHDLTHLEAISLFKTIKNGSISLHICRRLKSKK 670
            +NG+     TH +A+  FKT K   I + + RR     
Sbjct: 68  EVNGRDLSRATHDQAVEAFKTAKE-PIVVQVLRRTSGPS 105

>d1uhpa_ b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1095
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.3 bits (120), Expect = 2e-08
 Identities = 30/94 (31%), Positives = 45/94 (47%), Gaps = 5/94 (5%)

Query: 387 GQTMVRVNRRDFNEELGIYIAKIKNSSEGNIG----GFVVAHIVSGGLAEKEGCLELGDE 442
           G+++  V  RD +  LG  I   + S + + G    G  V+ IV  G A KEG L++ D 
Sbjct: 7   GKSLTLVLHRD-SGSLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDR 65

Query: 443 IISVNGQRLRGLTMTQAKSIISSGPLNMDLLISR 476
           II VNG+ L   T  QA     +    + + + R
Sbjct: 66  IIEVNGRDLSRATHDQAVEAFKTAKEPIVVQVLR 99

>d1wg6a_ b.36.1.1 (A:) Partitioning-defective 3-like protein, PAR3-L (RIKEN cDNA 2810455b10) {Mouse (Mus musculus) [TaxId: 10090]} Length = 127

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Partitioning-defective 3-like protein, PAR3-L (RIKEN cDNA 2810455b10)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 80.1 bits (197), Expect = 1e-18
 Identities = 33/98 (33%), Positives = 51/98 (52%), Gaps = 9/98 (9%)

Query: 575 TFHTIVFEKGPGKKGLGFTIVGGKDSPRG-AIGIFIKSILDNGQAAEDGRLKEGDEILAI 633
           T    + + G    GLG ++ G K    G  +GIFIKSI+  G A +DGRL+  D+++A+
Sbjct: 26  TLEIPLNDSGSA--GLGVSLKGNKSRETGTDLGIFIKSIIHGGAAFKDGRLRMNDQLIAV 83

Query: 634 NGQVCHDLTHLEAISLFKTIKN------GSISLHICRR 665
           NG+     ++ EA+   +   +      G I L I RR
Sbjct: 84  NGETLLGKSNHEAMETLRRSMSMEGNIRGMIQLVILRR 121

>d1wg6a_ b.36.1.1 (A:) Partitioning-defective 3-like protein, PAR3-L (RIKEN cDNA 2810455b10) {Mouse (Mus musculus) [TaxId: 10090]} Length = 127

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Partitioning-defective 3-like protein, PAR3-L (RIKEN cDNA 2810455b10)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 60.9 bits (147), Expect = 8e-12
 Identities = 33/126 (26%), Positives = 56/126 (44%), Gaps = 11/126 (8%)

Query: 364 SSDYHSMMEISELSSENSEDSQEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVA 423
           SS      +   LS E+SE   +    + +N    +  LG+ +   K+   G   G  + 
Sbjct: 5   SSGLKGEPDCYALSLESSE---QLTLEIPLNDSG-SAGLGVSLKGNKSRETGTDLGIFIK 60

Query: 424 HIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSII-------SSGPLNMDLLISR 476
            I+ GG A K+G L + D++I+VNG+ L G +  +A   +        +    + L+I R
Sbjct: 61  SIIHGGAAFKDGRLRMNDQLIAVNGETLLGKSNHEAMETLRRSMSMEGNIRGMIQLVILR 120

Query: 477 TSLKKS 482
            S   S
Sbjct: 121 RSGPSS 126

>d1tp5a1 b.36.1.1 (A:302-403) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 102

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synaptic protein PSD-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 79.2 bits (195), Expect = 1e-18
 Identities = 35/101 (34%), Positives = 51/101 (50%), Gaps = 14/101 (13%)

Query: 565 LPRRPRSAICTFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRL 624
           +PR PR        IV  +G    GLGF IVGG+D      GIFI  IL  G A   G L
Sbjct: 6   IPREPR-------RIVIHRGST--GLGFNIVGGEDGE----GIFISFILAGGPADLSGEL 52

Query: 625 KEGDEILAINGQVCHDLTHLEAISLFKTIKNGSISLHICRR 665
           ++GD+IL++NG    + +H +A    K     ++++    +
Sbjct: 53  RKGDQILSVNGVDLRNASHEQAAIALKNAGQ-TVTIIAQYK 92

>d1tp5a1 b.36.1.1 (A:302-403) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 102

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synaptic protein PSD-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 49.9 bits (119), Expect = 2e-08
 Identities = 24/96 (25%), Positives = 43/96 (44%), Gaps = 7/96 (7%)

Query: 381 SEDSQEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELG 440
            ED       + ++R   +  LG  I   ++       G  ++ I++GG A+  G L  G
Sbjct: 3   EEDIPREPRRIVIHRG--STGLGFNIVGGEDGE-----GIFISFILAGGPADLSGELRKG 55

Query: 441 DEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISR 476
           D+I+SVNG  LR  +  QA   + +    + ++   
Sbjct: 56  DQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQY 91

>d1wfva_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.8 bits (194), Expect = 2e-18
 Identities = 31/94 (32%), Positives = 52/94 (55%), Gaps = 6/94 (6%)

Query: 576 FHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAING 635
           + T+  EKG   KG GF+I GG++       +++  + ++G A  +GR++ GD+I+ ING
Sbjct: 12  YFTVDMEKGA--KGFGFSIRGGREYKMD---LYVLRLAEDGPAIRNGRMRVGDQIIEING 66

Query: 636 QVCHDLTHLEAISLFKTIKNGSISLHICRRLKSK 669
           +   D+TH  AI L K+     + L + R   S 
Sbjct: 67  ESTRDMTHARAIELIKSGGR-RVRLLLKRGTGSG 99

>d1wfva_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.1 bits (122), Expect = 1e-08
 Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 4/78 (5%)

Query: 399 NEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQ 458
            +  G  I   +           V  +   G A + G + +GD+II +NG+  R +T  +
Sbjct: 21  AKGFGFSIRGGREYK----MDLYVLRLAEDGPAIRNGRMRVGDQIIEINGESTRDMTHAR 76

Query: 459 AKSIISSGPLNMDLLISR 476
           A  +I SG   + LL+ R
Sbjct: 77  AIELIKSGGRRVRLLLKR 94

>d1m5za_ b.36.1.1 (A:) Glutamate receptor interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 91

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 78.4 bits (193), Expect = 2e-18
 Identities = 22/90 (24%), Positives = 35/90 (38%), Gaps = 6/90 (6%)

Query: 576 FHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAING 635
            H +   K  G +  GF++  G        G+++K+I   G   + G LK  D +L +N 
Sbjct: 7   LHKVTLYKDSGMEDFGFSVADGLLEK----GVYVKNIRPAG-PGDLGGLKPYDRLLQVNH 61

Query: 636 QVCHDLTHLEAISLFKTIKNGSISLHICRR 665
               D      + L     N  + L I R 
Sbjct: 62  VRTRDFDCCLVVPLIAESGN-KLDLVISRN 90

>d1m5za_ b.36.1.1 (A:) Glutamate receptor interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 91

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 54.2 bits (130), Expect = 5e-10
 Identities = 21/86 (24%), Positives = 34/86 (39%), Gaps = 6/86 (6%)

Query: 391 VRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQR 450
           V + +    E+ G  +A           G  V +I   G  +  G L+  D ++ VN  R
Sbjct: 10  VTLYKDSGMEDFGFSVADGLLEK-----GVYVKNIRPAGPGDL-GGLKPYDRLLQVNHVR 63

Query: 451 LRGLTMTQAKSIISSGPLNMDLLISR 476
            R         +I+     +DL+ISR
Sbjct: 64  TRDFDCCLVVPLIAESGNKLDLVISR 89

>d1p1da2 b.36.1.1 (A:115-213) Glutamate receptor interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 99

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 78.4 bits (193), Expect = 2e-18
 Identities = 19/88 (21%), Positives = 33/88 (37%), Gaps = 3/88 (3%)

Query: 578 TIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQV 637
            +   K      LG TI        G   + I  I     A   G L+ GD++LAI+   
Sbjct: 13  HVKLPKKHSV-ELGITISSPSSRKPGD-PLVISDIKKGSVAHRTGTLELGDKLLAIDNIR 70

Query: 638 CHDLTHLEAISLFKTIKNGSISLHICRR 665
               +  +A+ + +  +   + L I + 
Sbjct: 71  LDSCSMEDAVQILQQCE-DLVKLKIRKD 97

>d1p1da2 b.36.1.1 (A:115-213) Glutamate receptor interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 99

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 60.3 bits (146), Expect = 5e-12
 Identities = 25/92 (27%), Positives = 47/92 (51%), Gaps = 3/92 (3%)

Query: 385 QEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEII 444
             G   V++ ++  + ELGI I+   +   G+    V++ I  G +A + G LELGD+++
Sbjct: 8   SSGTFHVKLPKKH-SVELGITISSPSSRKPGD--PLVISDIKKGSVAHRTGTLELGDKLL 64

Query: 445 SVNGQRLRGLTMTQAKSIISSGPLNMDLLISR 476
           +++  RL   +M  A  I+      + L I +
Sbjct: 65  AIDNIRLDSCSMEDAVQILQQCEDLVKLKIRK 96

>d1qava_ b.36.1.1 (A:) Syntrophin {Mouse (Mus musculus) [TaxId: 10090]} Length = 90

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntrophin
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 77.6 bits (191), Expect = 3e-18
 Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 6/91 (6%)

Query: 577 HTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQ 636
             +   K     GLG +I GG+++      I I  I     A +   L  GD IL++NG+
Sbjct: 6   RRVTVRKADAG-GLGISIKGGRENKMP---ILISKIFKGLAADQTEALFVGDAILSVNGE 61

Query: 637 VCHDLTHLEAISLFKTIKNGSISLHICRRLK 667
                TH EA+   K      + L + + +K
Sbjct: 62  DLSSATHDEAVQALKKTG-KEVVLEV-KYMK 90

>d1qava_ b.36.1.1 (A:) Syntrophin {Mouse (Mus musculus) [TaxId: 10090]} Length = 90

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntrophin
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 54.9 bits (132), Expect = 3e-10
 Identities = 22/86 (25%), Positives = 37/86 (43%), Gaps = 5/86 (5%)

Query: 391 VRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQR 450
           V V + D    LGI I   + +        +++ I  G  A++   L +GD I+SVNG+ 
Sbjct: 8   VTVRKAD-AGGLGISIKGGRENKMP----ILISKIFKGLAADQTEALFVGDAILSVNGED 62

Query: 451 LRGLTMTQAKSIISSGPLNMDLLISR 476
           L   T  +A   +      + L +  
Sbjct: 63  LSSATHDEAVQALKKTGKEVVLEVKY 88

>d1ujda_ b.36.1.1 (A:) Hypothetical protein KIAA0559 {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA0559
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.5 bits (193), Expect = 4e-18
 Identities = 29/89 (32%), Positives = 40/89 (44%), Gaps = 3/89 (3%)

Query: 582 EKGPGKKGLGFTIVGGKDSP--RGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCH 639
           +      GLG  IVGGK+ P   G IG +I  IL  G A + G+L EG ++L  NG    
Sbjct: 24  DHTVSGNGLGIRIVGGKEIPGHSGEIGAYIAKILPGGSAEQTGKLMEGMQVLEWNGIPLT 83

Query: 640 DLTHLEAISLFKTIKNGSISLHICRRLKS 668
             T+ E  S+      G   + +   L  
Sbjct: 84  SKTYEEVQSIISQQS-GEAEICVRLDLNM 111

>d1ujda_ b.36.1.1 (A:) Hypothetical protein KIAA0559 {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA0559
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.2 bits (143), Expect = 2e-11
 Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 1/83 (1%)

Query: 395 RRDFNEELGIYIAKIKNSSEGNI-GGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRG 453
                  LGI I   K     +   G  +A I+ GG AE+ G L  G +++  NG  L  
Sbjct: 25  HTVSGNGLGIRIVGGKEIPGHSGEIGAYIAKILPGGSAEQTGKLMEGMQVLEWNGIPLTS 84

Query: 454 LTMTQAKSIISSGPLNMDLLISR 476
            T  + +SIIS      ++ +  
Sbjct: 85  KTYEEVQSIISQQSGEAEICVRL 107

>d2h3la1 b.36.1.1 (A:1310-1412) Erbin {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Erbin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.0 bits (192), Expect = 4e-18
 Identities = 31/96 (32%), Positives = 46/96 (47%), Gaps = 11/96 (11%)

Query: 578 TIVFEKGPGKKGLGFTIVGGKDSPR-----GAIGIFIKSILDNGQAAEDGRLKEGDEILA 632
            +  EK P    LGF+I GG             GIF+  +   G A     L+ GD+I+ 
Sbjct: 14  RVRVEKDPE---LGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPA--SKLLQPGDKIIQ 68

Query: 633 INGQVCHDLTHLEAISLFKTIKNGSISLHICRRLKS 668
            NG    ++ H +A+SL KT +N ++ L I R + S
Sbjct: 69  ANGYSFINIEHGQAVSLLKTFQN-TVELIIVREVSS 103

>d2h3la1 b.36.1.1 (A:1310-1412) Erbin {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Erbin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.9 bits (127), Expect = 3e-09
 Identities = 24/90 (26%), Positives = 38/90 (42%), Gaps = 7/90 (7%)

Query: 391 VRVNRRDFNEELGIYIA----KIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISV 446
           +RV     + ELG  I+       N    +  G  V  +   G A     L+ GD+II  
Sbjct: 13  IRVRVEK-DPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPAS--KLLQPGDKIIQA 69

Query: 447 NGQRLRGLTMTQAKSIISSGPLNMDLLISR 476
           NG     +   QA S++ +    ++L+I R
Sbjct: 70  NGYSFINIEHGQAVSLLKTFQNTVELIIVR 99

>d1ujua_ b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]} Length = 111

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.7 bits (191), Expect = 5e-18
 Identities = 31/99 (31%), Positives = 50/99 (50%), Gaps = 8/99 (8%)

Query: 576 FHTIVFEKGPGKKGLGFTIVGGKDSPRGAI------GIFIKSILDNGQAAEDGRLKEGDE 629
              +  +K PG+  LG +I GG     G        GIFI  +   G A  DGRL+ G  
Sbjct: 10  LRELCIQKAPGE-RLGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRLRVGLR 68

Query: 630 ILAINGQVCHDLTHLEAISLFKTIKNGSISLHICRRLKS 668
           +L +N Q    LTH EA+ L +++ + ++++ +C   +S
Sbjct: 69  LLEVNQQSLLGLTHGEAVQLLRSVGD-TLTVLVCDGFES 106

>d1ujua_ b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]} Length = 111

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.0 bits (132), Expect = 5e-10
 Identities = 26/101 (25%), Positives = 43/101 (42%), Gaps = 6/101 (5%)

Query: 381 SEDSQEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNI-----GGFVVAHIVSGGLAEKEG 435
           S  S  G   + + +    E LGI I        GN       G  ++ +   G A ++G
Sbjct: 3   SGSSGPGLRELCIQKAP-GERLGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDG 61

Query: 436 CLELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISR 476
            L +G  ++ VN Q L GLT  +A  ++ S    + +L+  
Sbjct: 62  RLRVGLRLLEVNQQSLLGLTHGEAVQLLRSVGDTLTVLVCD 102

>d1whaa_ b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.3 bits (190), Expect = 6e-18
 Identities = 33/96 (34%), Positives = 46/96 (47%), Gaps = 6/96 (6%)

Query: 577 HTIVFEKGPGKKGLGFTIVGGKDSP---RGAIGIFIKSILDNGQAAEDGRLKEGDEILAI 633
           H     +     GLGF+I GGK S     G  GIF+  I + G A   G L+ GD +L+I
Sbjct: 9   HVACLARSER--GLGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGDRVLSI 66

Query: 634 NGQVCHDLTHLEAISLFKTIKNGSISLHICRRLKSK 669
           NG    +  H  A+SL     + +I+L + R   S 
Sbjct: 67  NGVDVTEARHDHAVSLLTA-ASPTIALLLEREAGSG 101

>d1whaa_ b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.5 bits (123), Expect = 7e-09
 Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 4/92 (4%)

Query: 387 GQTMVRVNRRDFNEELGIYIAKIKNSSEGNIG--GFVVAHIVSGGLAEKEGCLELGDEII 444
           G+ +  + R +    LG  IA  K S+    G  G  V+ I  GG A + G L++GD ++
Sbjct: 7   GRHVACLARSE--RGLGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGDRVL 64

Query: 445 SVNGQRLRGLTMTQAKSIISSGPLNMDLLISR 476
           S+NG  +       A S++++    + LL+ R
Sbjct: 65  SINGVDVTEARHDHAVSLLTAASPTIALLLER 96

>d1x45a1 b.36.1.1 (A:8-92) Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11) {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.0 bits (187), Expect = 1e-17
 Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 3/85 (3%)

Query: 579 IVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVC 638
           +  EK  G+  LG  IV           + I +++  G A + G+L  GD+I++ING   
Sbjct: 2   VFIEKQKGE-ILGVVIVESGWGSILP-TVIIANMMHGGPAEKSGKLNIGDQIMSINGTSL 59

Query: 639 HDLTHLEAISLFKTIKNGS-ISLHI 662
             L      S+ K +KN S + L+I
Sbjct: 60  VGLPLSTCQSIIKGLKNQSRVKLNI 84

>d1x45a1 b.36.1.1 (A:8-92) Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11) {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.6 bits (139), Expect = 3e-11
 Identities = 26/77 (33%), Positives = 44/77 (57%), Gaps = 3/77 (3%)

Query: 391 VRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQR 450
           V + ++   E LG+ I +    S   +   ++A+++ GG AEK G L +GD+I+S+NG  
Sbjct: 2   VFIEKQK-GEILGVVIVESGWGSI--LPTVIIANMMHGGPAEKSGKLNIGDQIMSINGTS 58

Query: 451 LRGLTMTQAKSIISSGP 467
           L GL ++  +SII    
Sbjct: 59  LVGLPLSTCQSIIKGLK 75

>d1uepa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.5 bits (188), Expect = 1e-17
 Identities = 25/93 (26%), Positives = 42/93 (45%), Gaps = 6/93 (6%)

Query: 578 TIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQV 637
            +   +     G GF I+GG +  +    I I +++  G A  DGRL  GDE++ ++G  
Sbjct: 12  DVHLRRMES--GFGFRILGGDEPGQP---ILIGAVIAMGSADRDGRLHPGDELVYVDGIP 66

Query: 638 CHDLTHLEAISLFKTIKNGS-ISLHICRRLKSK 669
               TH   I L         ++L + R++ S 
Sbjct: 67  VAGKTHRYVIDLMHHAARNGQVNLTVRRKVLSG 99

>d1uepa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.4 bits (123), Expect = 9e-09
 Identities = 20/98 (20%), Positives = 40/98 (40%), Gaps = 7/98 (7%)

Query: 381 SEDSQEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELG 440
           S  S   + +    RR  +   G  I              ++  +++ G A+++G L  G
Sbjct: 2   SSGSSGYKELDVHLRRMESG-FGFRILGGDEPG----QPILIGAVIAMGSADRDGRLHPG 56

Query: 441 DEIISVNGQRLRGLTMTQAKSIISSGPLN--MDLLISR 476
           DE++ V+G  + G T      ++     N  ++L + R
Sbjct: 57  DELVYVDGIPVAGKTHRYVIDLMHHAARNGQVNLTVRR 94

>d1ozia_ b.36.1.1 (A:) Phosphatase hPTP1e {Mouse (Mus musculus) [TaxId: 10090]} Length = 99

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Phosphatase hPTP1e
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 76.2 bits (187), Expect = 1e-17
 Identities = 25/94 (26%), Positives = 44/94 (46%), Gaps = 8/94 (8%)

Query: 577 HTIVFEKGPGKKGLGFTIV-----GGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEIL 631
             +   K  G   LG ++      GG ++     GI++K+I+  G A  DGR+ +GD +L
Sbjct: 6   FEVELAKTDG--SLGISVTVLFDKGGVNTSVRHGGIYVKAIIPKGAAESDGRIHKGDRVL 63

Query: 632 AINGQVCHDLTHLEAISLFKTIKNGSISLHICRR 665
           A+NG      TH +A+   +      + L + + 
Sbjct: 64  AVNGVSLEGATHKQAVETLRNTGQ-VVHLLLEKG 96

>d1ozia_ b.36.1.1 (A:) Phosphatase hPTP1e {Mouse (Mus musculus) [TaxId: 10090]} Length = 99

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Phosphatase hPTP1e
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 55.0 bits (132), Expect = 4e-10
 Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 7/97 (7%)

Query: 385 QEGQTM-VRVNRRDFNEELGIYIA----KIKNSSEGNIGGFVVAHIVSGGLAEKEGCLEL 439
           + G T  V + + D    LGI +     K   ++    GG  V  I+  G AE +G +  
Sbjct: 1   KPGDTFEVELAKTD--GSLGISVTVLFDKGGVNTSVRHGGIYVKAIIPKGAAESDGRIHK 58

Query: 440 GDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISR 476
           GD +++VNG  L G T  QA   + +    + LL+ +
Sbjct: 59  GDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEK 95

>d1x5ra1 b.36.1.1 (A:8-106) Glutamate receptor interacting protein 2, GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId: 9606]} Length = 99

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein 2, GRIP2 (KIAA1719)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.1 bits (187), Expect = 1e-17
 Identities = 21/81 (25%), Positives = 31/81 (38%), Gaps = 2/81 (2%)

Query: 577 HTIVFEKGPGKKGLGFTIVGGKDSPRG-AIGIFIKSILDNGQAAEDGRLKEGDEILAING 635
             +V    P   G G  + GG  +    +    +  I  +  A   G L+ GD +L+ING
Sbjct: 10  TEVVLCGDPLS-GFGLQLQGGIFATETLSSPPLVCFIEPDSPAERCGLLQVGDRVLSING 68

Query: 636 QVCHDLTHLEAISLFKTIKNG 656
               D T  EA  L +     
Sbjct: 69  IATEDGTMEEANQLLRDAALA 89

>d1x5ra1 b.36.1.1 (A:8-106) Glutamate receptor interacting protein 2, GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId: 9606]} Length = 99

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein 2, GRIP2 (KIAA1719)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.5 bits (162), Expect = 4e-14
 Identities = 18/80 (22%), Positives = 35/80 (43%)

Query: 395 RRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGL 454
             D     G+ +     ++E      +V  I     AE+ G L++GD ++S+NG      
Sbjct: 15  CGDPLSGFGLQLQGGIFATETLSSPPLVCFIEPDSPAERCGLLQVGDRVLSINGIATEDG 74

Query: 455 TMTQAKSIISSGPLNMDLLI 474
           TM +A  ++    L   +++
Sbjct: 75  TMEEANQLLRDAALAHKVVL 94

>d1rgwa_ b.36.1.1 (A:) Zasp (Cypher, Oracle 1) {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Zasp (Cypher, Oracle 1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.3 bits (185), Expect = 2e-17
 Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 8/88 (9%)

Query: 577 HTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQ 636
           +++           GF + GGKD       + I  I   G  A   +L +GD ++AI+G 
Sbjct: 3   YSVTLTGP---GPWGFRLQGGKDFNMP---LTISRITP-GSKAAQSQLSQGDLVVAIDGV 55

Query: 637 VCHDLTHLEAISLFKTIKNGSISLHICR 664
               +THLEA +  K+    ++SL + +
Sbjct: 56  NTDTMTHLEAQNKIKSASY-NLSLTLQK 82

>d1rgwa_ b.36.1.1 (A:) Zasp (Cypher, Oracle 1) {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Zasp (Cypher, Oracle 1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.0 bits (122), Expect = 7e-09
 Identities = 15/75 (20%), Positives = 33/75 (44%), Gaps = 5/75 (6%)

Query: 402 LGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKS 461
            G  +   K+ +        ++ I  G  A +   L  GD +++++G     +T  +A++
Sbjct: 13  WGFRLQGGKDFNMP----LTISRITPGSKAAQ-SQLSQGDLVVAIDGVNTDTMTHLEAQN 67

Query: 462 IISSGPLNMDLLISR 476
            I S   N+ L + +
Sbjct: 68  KIKSASYNLSLTLQK 82

>d1wh1a_ b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human (Homo sapiens) [TaxId: 9606]} Length = 124

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1095
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.2 bits (187), Expect = 3e-17
 Identities = 30/90 (33%), Positives = 44/90 (48%), Gaps = 3/90 (3%)

Query: 576 FHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAING 635
              +   +   +  LG T+    D     IGI+I  I  N  AA+DGR++EGD I+ ING
Sbjct: 20  LEEVDLYRMNSQDKLGLTVCYRTDDEDD-IGIYISEIDPNSIAAKDGRIREGDRIIQING 78

Query: 636 QVCHDLTHLEAISLFKTIKNGSISLHICRR 665
                    EA++L  + +N + SL I R 
Sbjct: 79  IEV--QNREEAVALLTSEENKNFSLLIARP 106

>d1wh1a_ b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human (Homo sapiens) [TaxId: 9606]} Length = 124

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1095
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.6 bits (131), Expect = 1e-09
 Identities = 26/121 (21%), Positives = 54/121 (44%), Gaps = 6/121 (4%)

Query: 374 SELSSENSEDSQEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEK 433
            ++  E   +  E +  V + R +  ++LG+ +    +  +    G  ++ I    +A K
Sbjct: 7   GDIHQEMDREELELEE-VDLYRMNSQDKLGLTVCYRTDDEDD--IGIYISEIDPNSIAAK 63

Query: 434 EGCLELGDEIISVNGQRLRGLTMTQAKSII-SSGPLNMDLLISRTSLKKSNAENEYNESH 492
           +G +  GD II +NG  ++     +A +++ S    N  LLI+R  L+      + +   
Sbjct: 64  DGRIREGDRIIQINGIEVQN--REEAVALLTSEENKNFSLLIARPELQLDEGWMDDDSGP 121

Query: 493 S 493
           S
Sbjct: 122 S 122

>d1x5qa1 b.36.1.1 (A:8-104) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]} Length = 97

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.6 bits (183), Expect = 4e-17
 Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 7/91 (7%)

Query: 577 HTIVFEKGPGKKGLGFTIVGGKDSP---RGAIGIFIKSILDNGQAAEDGRLKEGDEILAI 633
            T+   +  G  GLG +I GGK S        GIFI  + + G  A    ++ GD++L +
Sbjct: 10  LTLTILRQTG--GLGISIAGGKGSTPYKGDDEGIFISRVSEEG-PAARAGVRVGDKLLEV 66

Query: 634 NGQVCHDLTHLEAISLFKTIKNGSISLHICR 664
           NG       H EA+   +     ++ + + R
Sbjct: 67  NGVALQGAEHHEAVEALRGAGT-AVQMRVWR 96

>d1x5qa1 b.36.1.1 (A:8-104) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]} Length = 97

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.8 bits (124), Expect = 5e-09
 Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 3/77 (3%)

Query: 402 LGIYIAKIKNSS--EGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQA 459
           LGI IA  K S+  +G+  G  ++ +   G A +   + +GD+++ VNG  L+G    +A
Sbjct: 21  LGISIAGGKGSTPYKGDDEGIFISRVSEEGPAAR-AGVRVGDKLLEVNGVALQGAEHHEA 79

Query: 460 KSIISSGPLNMDLLISR 476
              +      + + + R
Sbjct: 80  VEALRGAGTAVQMRVWR 96

>d1g9oa_ b.36.1.1 (A:) Na+/H+ exchanger regulatory factor, NHERF {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Na+/H+ exchanger regulatory factor, NHERF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.5 bits (183), Expect = 5e-17
 Identities = 25/98 (25%), Positives = 40/98 (40%), Gaps = 15/98 (15%)

Query: 568 RPRSAICTFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEG 627
            PR           EKGP   G GF + G K       G +I+ +     A + G L  G
Sbjct: 3   LPR-------LCCLEKGPN--GYGFHLHGEKGKL----GQYIRLVEPGSPAEKAG-LLAG 48

Query: 628 DEILAINGQVCHDLTHLEAISLFKTIKNGSISLHICRR 665
           D ++ +NG+     TH + +S  +   N ++ L +   
Sbjct: 49  DRLVEVNGENVEKETHQQVVSRIRAALN-AVRLLVVDP 85

>d1g9oa_ b.36.1.1 (A:) Na+/H+ exchanger regulatory factor, NHERF {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Na+/H+ exchanger regulatory factor, NHERF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.6 bits (121), Expect = 1e-08
 Identities = 20/75 (26%), Positives = 31/75 (41%), Gaps = 6/75 (8%)

Query: 402 LGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKS 461
            G ++   K        G  +  +  G  AEK G L  GD ++ VNG+ +   T  Q  S
Sbjct: 16  YGFHLHGEKGK-----LGQYIRLVEPGSPAEKAG-LLAGDRLVEVNGENVEKETHQQVVS 69

Query: 462 IISSGPLNMDLLISR 476
            I +    + LL+  
Sbjct: 70  RIRAALNAVRLLVVD 84

>d1ueza_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.5 bits (183), Expect = 5e-17
 Identities = 22/90 (24%), Positives = 41/90 (45%), Gaps = 6/90 (6%)

Query: 576 FHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAING 635
              +   +    +GLGF+I GG +   G   I++  +     A ++G  + GD+IL +N 
Sbjct: 9   VRLVSLRRAKAHEGLGFSIRGGSEHGVG---IYVSLVEPGSLAEKEGL-RVGDQILRVND 64

Query: 636 QVCHDLTHLEAISLFKTIKNGSISLHICRR 665
           +    +TH EA+   K   +  + L +   
Sbjct: 65  KSLARVTHAEAVKALK--GSKKLVLSVYSA 92

>d1ueza_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.0 bits (114), Expect = 1e-07
 Identities = 27/96 (28%), Positives = 41/96 (42%), Gaps = 6/96 (6%)

Query: 381 SEDSQEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELG 440
           S  S     +V + R   +E LG  I        G      V+ +  G LAEKEG L +G
Sbjct: 2   SSGSSGEVRLVSLRRAKAHEGLGFSIRGGSEHGVG----IYVSLVEPGSLAEKEG-LRVG 56

Query: 441 DEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISR 476
           D+I+ VN + L  +T  +A   +      + L +  
Sbjct: 57  DQILRVNDKSLARVTHAEAVKALKGSK-KLVLSVYS 91

>d1v6ba_ b.36.1.1 (A:) Harmonin {Mouse (Mus musculus) [TaxId: 10090]} Length = 118

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Harmonin
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 74.7 bits (183), Expect = 9e-17
 Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 5/91 (5%)

Query: 578 TIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQV 637
            +   +   +  L   + GG DSP     + + ++ + G A   G + +GDEI+AING++
Sbjct: 18  DVRLLRIKKEGSLDLALEGGVDSPV--GKVVVSAVYEGGAAERHGGVVKGDEIMAINGKI 75

Query: 638 CHDLTHLEAISLFKTIKNG---SISLHICRR 665
             D T  EA +  +   N     I L +   
Sbjct: 76  VTDYTLAEAEAALQKAWNQGGDWIDLVVAVC 106

>d1v6ba_ b.36.1.1 (A:) Harmonin {Mouse (Mus musculus) [TaxId: 10090]} Length = 118

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Harmonin
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 58.5 bits (141), Expect = 4e-11
 Identities = 29/116 (25%), Positives = 57/116 (49%), Gaps = 7/116 (6%)

Query: 374 SELSSENSEDSQEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEK 433
           SE ++      Q     VR+ R      L + +    +S  G +   VV+ +  GG AE+
Sbjct: 2   SEGAATMFSPEQIAGKDVRLLRIKKEGSLDLALEGGVDSPVGKV---VVSAVYEGGAAER 58

Query: 434 EGCLELGDEIISVNGQRLRGLTMTQAKSII----SSGPLNMDLLISRTSLKKSNAE 485
            G +  GDEI+++NG+ +   T+ +A++ +    + G   +DL+++    K+ + E
Sbjct: 59  HGGVVKGDEIMAINGKIVTDYTLAEAEAALQKAWNQGGDWIDLVVAVCPPKEYDDE 114

>d1rzxa_ b.36.1.1 (A:) GTPase-binding domain of the cell polarity protein par6 (Par-6B) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 98

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: GTPase-binding domain of the cell polarity protein par6 (Par-6B)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 73.1 bits (179), Expect = 1e-16
 Identities = 22/94 (23%), Positives = 34/94 (36%), Gaps = 7/94 (7%)

Query: 575 TFHTIVFEKGPGKKGLGFTIVGGKDSPRGAI------GIFIKSILDNGQAAEDGRLKEGD 628
           T   +   K    K LGF I  G      A       GIFI  ++  G A   G L   D
Sbjct: 2   THRRVRLLKHGSDKPLGFYIRDGTSVRVTASGLEKQPGIFISRLVPGGLAESTGLLAVND 61

Query: 629 EILAINGQVCHDLTHLEAISLFKTIKNGSISLHI 662
           E++ +NG      T  +   +       ++ + +
Sbjct: 62  EVIEVNGIEVAGKTLDQVTDMMVANS-SNLIITV 94

>d1rzxa_ b.36.1.1 (A:) GTPase-binding domain of the cell polarity protein par6 (Par-6B) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 98

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: GTPase-binding domain of the cell polarity protein par6 (Par-6B)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 58.8 bits (142), Expect = 2e-11
 Identities = 27/98 (27%), Positives = 46/98 (46%), Gaps = 5/98 (5%)

Query: 386 EGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIG-----GFVVAHIVSGGLAEKEGCLELG 440
           E    VR+ +   ++ LG YI    +      G     G  ++ +V GGLAE  G L + 
Sbjct: 1   ETHRRVRLLKHGSDKPLGFYIRDGTSVRVTASGLEKQPGIFISRLVPGGLAESTGLLAVN 60

Query: 441 DEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISRTS 478
           DE+I VNG  + G T+ Q   ++ +   N+ + +   +
Sbjct: 61  DEVIEVNGIEVAGKTLDQVTDMMVANSSNLIITVKPAN 98

>d2cs5a1 b.36.1.1 (A:8-113) Tyrosine-protein phosphatase non-receptor type 4, PTPN4 {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Tyrosine-protein phosphatase non-receptor type 4, PTPN4
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.4 bits (180), Expect = 2e-16
 Identities = 20/93 (21%), Positives = 34/93 (36%), Gaps = 8/93 (8%)

Query: 577 HTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAE-DGRLKEGDEILAING 635
             I  +        GF + GG D       + +  +     A     RL EGD+++ ING
Sbjct: 10  VLIRMKPDE-NGRFGFNVKGGYDQKMP---VIVSRVAPGTPADLCVPRLNEGDQVVLING 65

Query: 636 QVCHDLTHLEAISLFKTIKN---GSISLHICRR 665
           +   + TH + +   K       G + L +   
Sbjct: 66  RDIAEHTHDQVVLFIKASCERHSGELMLLVRPN 98

>d2cs5a1 b.36.1.1 (A:8-113) Tyrosine-protein phosphatase non-receptor type 4, PTPN4 {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Tyrosine-protein phosphatase non-receptor type 4, PTPN4
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.8 bits (129), Expect = 1e-09
 Identities = 19/111 (17%), Positives = 40/111 (36%), Gaps = 10/111 (9%)

Query: 380 NSEDSQEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEK-EGCLE 438
           N     +   ++R+ + D N   G  +    +         +V+ +  G  A+     L 
Sbjct: 1   NGGIPHDNLVLIRM-KPDENGRFGFNVKGGYDQKMP----VIVSRVAPGTPADLCVPRLN 55

Query: 439 LGDEIISVNGQRLRGLTMTQAKSII----SSGPLNMDLLISRTSLKKSNAE 485
            GD+++ +NG+ +   T  Q    I          + LL+   ++     E
Sbjct: 56  EGDQVVLINGRDIAEHTHDQVVLFIKASCERHSGELMLLVRPNAVYDVVEE 106

>d1v62a_ b.36.1.1 (A:) Glutamate receptor interacting protein 2, GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein 2, GRIP2 (KIAA1719)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.5 bits (180), Expect = 2e-16
 Identities = 24/93 (25%), Positives = 36/93 (38%), Gaps = 4/93 (4%)

Query: 578 TIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQV 637
            +   K PG   LG ++       +    I I  I         G L  GD IL+I+G  
Sbjct: 18  MVEIVKTPGS-ALGISLTTTSLRNKS--VITIDRIKPASVVDRSGALHPGDHILSIDGTS 74

Query: 638 CHDLTHLEAISLFKTIKNGSISLHICRRLKSKK 670
               + LEA  L  +I    + L I    +S++
Sbjct: 75  MEHCSLLEATKLLASIS-EKVRLEILPVPQSQR 106

>d1v62a_ b.36.1.1 (A:) Glutamate receptor interacting protein 2, GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein 2, GRIP2 (KIAA1719)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.3 bits (138), Expect = 9e-11
 Identities = 22/100 (22%), Positives = 44/100 (44%), Gaps = 4/100 (4%)

Query: 377 SSENSEDSQEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGC 436
           SS ++  +  G  MV + +      LGI +     +S  N     +  I    + ++ G 
Sbjct: 5   SSGDTVANASGPLMVEIVKTP-GSALGISLTT---TSLRNKSVITIDRIKPASVVDRSGA 60

Query: 437 LELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISR 476
           L  GD I+S++G  +   ++ +A  +++S    + L I  
Sbjct: 61  LHPGDHILSIDGTSMEHCSLLEATKLLASISEKVRLEILP 100

>d1w9ea1 b.36.1.1 (A:110-194) Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntenin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.4 bits (175), Expect = 5e-16
 Identities = 21/89 (23%), Positives = 39/89 (43%), Gaps = 8/89 (8%)

Query: 577 HTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQ 636
             ++  K      +G  +    +      GIF++ +  N  A+  G L+ GD++L ING+
Sbjct: 4   REVILCKDQDG-KIGLRLKSIDN------GIFVQLVQANSPASLVG-LRFGDQVLQINGE 55

Query: 637 VCHDLTHLEAISLFKTIKNGSISLHICRR 665
            C   +  +A  + K      I++ I  R
Sbjct: 56  NCAGWSSDKAHKVLKQAFGEKITMTIRDR 84

>d1vb7a_ b.36.1.1 (A:) PDZ-LIM protein mystique {Mouse (Mus musculus) [TaxId: 10090]} Length = 94

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: PDZ-LIM protein mystique
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 71.1 bits (174), Expect = 7e-16
 Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 5/80 (6%)

Query: 586 GKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLE 645
           G    GF I GG+D       I + + +     AE   L+ GD I+AINGQ   ++ H E
Sbjct: 14  GPAPWGFRISGGRDFHTP---IIV-TKVTERGKAEAADLRPGDIIVAINGQSAENMLHAE 69

Query: 646 AISLFKTIKNGSISLHICRR 665
           A S  +   +  + L + R 
Sbjct: 70  AQSKIRQSAS-PLRLQLDRS 88

>d1vb7a_ b.36.1.1 (A:) PDZ-LIM protein mystique {Mouse (Mus musculus) [TaxId: 10090]} Length = 94

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: PDZ-LIM protein mystique
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.2 bits (112), Expect = 2e-07
 Identities = 18/75 (24%), Positives = 31/75 (41%), Gaps = 5/75 (6%)

Query: 402 LGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKS 461
            G  I+  ++         +V  +   G AE    L  GD I+++NGQ    +   +A+S
Sbjct: 18  WGFRISGGRDFHTP----IIVTKVTERGKAEA-ADLRPGDIIVAINGQSAENMLHAEAQS 72

Query: 462 IISSGPLNMDLLISR 476
            I      + L + R
Sbjct: 73  KIRQSASPLRLQLDR 87

>d1y7na1 b.36.1.1 (A:12-90) Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11) {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.8 bits (171), Expect = 1e-15
 Identities = 20/86 (23%), Positives = 35/86 (40%), Gaps = 12/86 (13%)

Query: 577 HTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQ 636
            T++  +   +  LGF++  G           I S++  G  AE G ++ G  I+ INGQ
Sbjct: 2   TTVLIRRPDLRYQLGFSVQNG----------IICSLMRGG-IAERGGVRVGHRIIEINGQ 50

Query: 637 VCHDLTHLEAISLFKTIKNGSISLHI 662
                 H + + +      G I +  
Sbjct: 51  SVVATPHEKIVHILSNAV-GEIHMKT 75

>d1y7na1 b.36.1.1 (A:12-90) Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11) {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.5 bits (126), Expect = 2e-09
 Identities = 19/90 (21%), Positives = 38/90 (42%), Gaps = 12/90 (13%)

Query: 389 TMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNG 448
           T V + R D   +LG  +              ++  ++ GG+AE+ G + +G  II +NG
Sbjct: 2   TTVLIRRPDLRYQLGFSVQ-----------NGIICSLMRGGIAERGG-VRVGHRIIEING 49

Query: 449 QRLRGLTMTQAKSIISSGPLNMDLLISRTS 478
           Q +      +   I+S+    + +     +
Sbjct: 50  QSVVATPHEKIVHILSNAVGEIHMKTMPAA 79

>d1wf7a_ b.36.1.1 (A:) Enigma homolog ENH {Mouse (Mus musculus) [TaxId: 10090]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Enigma homolog ENH
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 70.4 bits (172), Expect = 2e-15
 Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 5/86 (5%)

Query: 586 GKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLE 645
           G    GF + GGKD       + I S+ D G  A    ++ GD +L+I+G     +THLE
Sbjct: 13  GPAPWGFRLQGGKDFNMP---LTISSLKD-GGKASQAHVRIGDVVLSIDGISAQGMTHLE 68

Query: 646 AISLFKTIKNGSISLHICRRLKSKKT 671
           A +  K     S+++ + R   + K+
Sbjct: 69  AQNKIKACTG-SLNMTLQRASAAAKS 93

>d1wf7a_ b.36.1.1 (A:) Enigma homolog ENH {Mouse (Mus musculus) [TaxId: 10090]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Enigma homolog ENH
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.5 bits (102), Expect = 5e-06
 Identities = 14/75 (18%), Positives = 38/75 (50%), Gaps = 5/75 (6%)

Query: 402 LGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKS 461
            G  +   K+ +        ++ +  GG A +   + +GD ++S++G   +G+T  +A++
Sbjct: 17  WGFRLQGGKDFNMP----LTISSLKDGGKASQ-AHVRIGDVVLSIDGISAQGMTHLEAQN 71

Query: 462 IISSGPLNMDLLISR 476
            I +   ++++ + R
Sbjct: 72  KIKACTGSLNMTLQR 86

>d1v5qa_ b.36.1.1 (A:) Glutamate receptor interacting protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 122

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 70.8 bits (173), Expect = 2e-15
 Identities = 21/81 (25%), Positives = 30/81 (37%), Gaps = 2/81 (2%)

Query: 577 HTIVFEKGPGKKGLGFTIVGGKDSPR-GAIGIFIKSILDNGQAAEDGRLKEGDEILAING 635
             +V    P   G G  + G   +    +    I  I  +  A   G L+ GD ++AING
Sbjct: 17  TEVVLTADPVT-GFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAING 75

Query: 636 QVCHDLTHLEAISLFKTIKNG 656
               D T  EA  L +     
Sbjct: 76  IPTEDSTFEEANQLLRDSSIT 96

>d1v5qa_ b.36.1.1 (A:) Glutamate receptor interacting protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 122

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 56.6 bits (136), Expect = 2e-10
 Identities = 15/82 (18%), Positives = 36/82 (43%)

Query: 395 RRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGL 454
             D     GI +     ++E      ++++I +   AE+ G L++GD ++++NG      
Sbjct: 22  TADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDS 81

Query: 455 TMTQAKSIISSGPLNMDLLISR 476
           T  +A  ++    +   + +  
Sbjct: 82  TFEEANQLLRDSSITSKVTLEI 103

>d1ufxa_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.3 bits (172), Expect = 2e-15
 Identities = 23/93 (24%), Positives = 33/93 (35%), Gaps = 8/93 (8%)

Query: 577 HTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQ 636
             +  +K      LG  I GG ++ +      I +I   G A   G+LK G  IL +NG 
Sbjct: 8   TLVRVKKSAA--TLGIAIEGGANTRQP--LPRIVTIQRGGSAHNCGQLKVGHVILEVNGL 63

Query: 637 VCHDLTHLEAISLFK----TIKNGSISLHICRR 665
                 H EA  +      T     I   +   
Sbjct: 64  TLRGKEHREAARIIAEAFKTKDRDYIDFLVTEF 96

>d1ufxa_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.9 bits (132), Expect = 4e-10
 Identities = 28/89 (31%), Positives = 38/89 (42%), Gaps = 5/89 (5%)

Query: 384 SQEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEI 443
           S    T+VRV +      LGI I    N+ +       +  I  GG A   G L++G  I
Sbjct: 3   SGSSGTLVRVKKS--AATLGIAIEGGANTRQPLP---RIVTIQRGGSAHNCGQLKVGHVI 57

Query: 444 ISVNGQRLRGLTMTQAKSIISSGPLNMDL 472
           + VNG  LRG    +A  II+      D 
Sbjct: 58  LEVNGLTLRGKEHREAARIIAEAFKTKDR 86

>d1kwaa_ b.36.1.1 (A:) Cask/Lin-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Cask/Lin-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.5 bits (170), Expect = 2e-15
 Identities = 22/95 (23%), Positives = 38/95 (40%), Gaps = 14/95 (14%)

Query: 568 RPRSAICTFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEG 627
           R R        + F+K   +  +G T+   + +        +  I+  G     G L  G
Sbjct: 1   RSR-------LVQFQKNTDE-PMGITLKMNELN-----HCIVARIMHGGMIHRQGTLHVG 47

Query: 628 DEILAINGQVCHDLTHLEAISLFKTIKNGSISLHI 662
           DEI  ING    + T  +   + + ++ GSI+  I
Sbjct: 48  DEIREINGISVANQTVEQLQKMLREMR-GSITFKI 81

>d1kwaa_ b.36.1.1 (A:) Cask/Lin-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Cask/Lin-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.5 bits (139), Expect = 4e-11
 Identities = 20/89 (22%), Positives = 42/89 (47%), Gaps = 7/89 (7%)

Query: 390 MVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQ 449
           +V+  +   +E +GI +          +   +VA I+ GG+  ++G L +GDEI  +NG 
Sbjct: 4   LVQFQKNT-DEPMGITL------KMNELNHCIVARIMHGGMIHRQGTLHVGDEIREINGI 56

Query: 450 RLRGLTMTQAKSIISSGPLNMDLLISRTS 478
            +   T+ Q + ++     ++   I  + 
Sbjct: 57  SVANQTVEQLQKMLREMRGSITFKIVPSY 85

>d1q3oa_ b.36.1.1 (A:) Shank1, PDZ domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 104

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Shank1, PDZ domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 70.0 bits (171), Expect = 2e-15
 Identities = 20/97 (20%), Positives = 45/97 (46%), Gaps = 12/97 (12%)

Query: 577 HTIVFEKGPGKKGLGFTIVGGKD---------SPRGAIGIFIKSILDNGQAAEDGRLKEG 627
            T++ +K   + G GF + G K          +P      +++S+ + G A   G L+ G
Sbjct: 7   KTVLLQKKDSE-GFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAG-LRMG 64

Query: 628 DEILAINGQVCHDLTHLEAISLFKTIKNGSISLHICR 664
           D ++ +NGQ    + H + +++ +   N ++ + +  
Sbjct: 65  DFLIEVNGQNVVKVGHRQVVNMIRQGGN-TLMVKVVM 100

>d1q3oa_ b.36.1.1 (A:) Shank1, PDZ domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 104

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Shank1, PDZ domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 52.3 bits (125), Expect = 4e-09
 Identities = 21/104 (20%), Positives = 42/104 (40%), Gaps = 10/104 (9%)

Query: 383 DSQEGQTMVRVNRRDFNEELGIYIAKIKN--------SSEGNIGGFVVAHIVSGGLAEKE 434
           D    +  V + ++D +E  G  +   K          +        +  +  GG+A + 
Sbjct: 1   DYIIKEKTVLLQKKD-SEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRA 59

Query: 435 GCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISRTS 478
           G L +GD +I VNGQ +  +   Q  ++I  G   + + +   +
Sbjct: 60  G-LRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVMVT 102

>d1va8a1 b.36.1.1 (A:8-107) Maguk p55 subfamily member 5 {Mouse (Mus musculus) [TaxId: 10090]} Length = 100

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Maguk p55 subfamily member 5
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 69.9 bits (171), Expect = 3e-15
 Identities = 24/88 (27%), Positives = 35/88 (39%), Gaps = 8/88 (9%)

Query: 575 TFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAIN 634
           T   +  EK      LG T+    D       + I  I+  G A + G L EGDE+L IN
Sbjct: 18  TVKIVRIEKARDI-PLGATVRNEMD------SVIISRIVKGGAAEKSGLLHEGDEVLEIN 70

Query: 635 GQVCHDLTHLEAISLFKTIKNGSISLHI 662
           G         E   L   +  G+++  +
Sbjct: 71  GIEIRGKDVNEVFDLLSDMH-GTLTFVL 97

>d1va8a1 b.36.1.1 (A:8-107) Maguk p55 subfamily member 5 {Mouse (Mus musculus) [TaxId: 10090]} Length = 100

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Maguk p55 subfamily member 5
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 55.7 bits (134), Expect = 3e-10
 Identities = 24/104 (23%), Positives = 47/104 (45%), Gaps = 13/104 (12%)

Query: 376 LSSENSEDSQ-----EGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGL 430
           ++ E   +S      E   +VR+  +  +  LG  +          +   +++ IV GG 
Sbjct: 2   ITDERVYESIGHYGGETVKIVRI-EKARDIPLGATVR-------NEMDSVIISRIVKGGA 53

Query: 431 AEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLI 474
           AEK G L  GDE++ +NG  +RG  + +   ++S     +  ++
Sbjct: 54  AEKSGLLHEGDEVLEINGIEIRGKDVNEVFDLLSDMHGTLTFVL 97

>d2f5ya1 b.36.1.1 (A:19-95) Regulator of G-protein signaling 3, RGS3 {Human (Homo sapiens) [TaxId: 9606]} Length = 77

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Regulator of G-protein signaling 3, RGS3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.7 bits (168), Expect = 3e-15
 Identities = 18/88 (20%), Positives = 35/88 (39%), Gaps = 11/88 (12%)

Query: 579 IVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVC 638
           I   +G    G GFTI            + ++++   G A   G L++ D +L +N +  
Sbjct: 1   ITIPRGKD--GFGFTI-------CCDSPVRVQAVDSGGPAERAG-LQQLDTVLQLNERPV 50

Query: 639 HDLTHLEAISLFKTIKNGSISLHICRRL 666
                +E     ++  +  I L + R +
Sbjct: 51  EHWKCVELAHEIRSCPS-EIILLVWRMV 77

>d2f5ya1 b.36.1.1 (A:19-95) Regulator of G-protein signaling 3, RGS3 {Human (Homo sapiens) [TaxId: 9606]} Length = 77

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Regulator of G-protein signaling 3, RGS3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.4 bits (123), Expect = 4e-09
 Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 1/59 (1%)

Query: 419 GFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISRT 477
              V  + SGG AE+ G L+  D ++ +N + +      +    I S P  + LL+ R 
Sbjct: 19  PVRVQAVDSGGPAERAG-LQQLDTVLQLNERPVEHWKCVELAHEIRSCPSEIILLVWRM 76

>d1x5na1 b.36.1.1 (A:8-108) Harmonin {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Harmonin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.1 bits (169), Expect = 4e-15
 Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 6/86 (6%)

Query: 580 VFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCH 639
           VF    G +GLG +I  G     G   IFI  +      + +  L+ GD+I+ +NG    
Sbjct: 12  VFISLVGSRGLGCSISSGPIQKPG---IFISHVKPGS-LSAEVGLEIGDQIVEVNGVDFS 67

Query: 640 DLTHLEAISLFKTIKNGSISLHICRR 665
           +L H EA+++ K   + S+++ I   
Sbjct: 68  NLDHKEAVNVLK--SSRSLTISIVAA 91

>d1x5na1 b.36.1.1 (A:8-108) Harmonin {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Harmonin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.0 bits (109), Expect = 5e-07
 Identities = 20/99 (20%), Positives = 42/99 (42%), Gaps = 9/99 (9%)

Query: 378 SENSEDSQEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCL 437
           S  + +++E +  +       +  LG  I+       G      ++H+  G L+ + G  
Sbjct: 1   SPGNRENKEKKVFIS---LVGSRGLGCSISSGPIQKPG----IFISHVKPGSLSAEVGLE 53

Query: 438 ELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISR 476
             GD+I+ VNG     L   +A +++ S   ++ + I  
Sbjct: 54  I-GDQIVEVNGVDFSNLDHKEAVNVLKSSR-SLTISIVA 90

>d1uewa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 114

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.3 bits (169), Expect = 5e-15
 Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 6/93 (6%)

Query: 577 HTIVFEKGPGKKGLGFTIVGGKDSPRGA----IGIFIKSILDNGQAAEDGRLKEGDEILA 632
             +V  +   + G GF I+   + P       +   I  I+D   A    +LK GD ILA
Sbjct: 12  SDVVIHRKENE-GFGFVIISSLNRPESGSTITVPHKIGRIIDGSPADRCAKLKVGDRILA 70

Query: 633 INGQVCHDLTHLEAISLFKTIKNGSISLHICRR 665
           +NGQ   ++ H + + L K     S++L I  +
Sbjct: 71  VNGQSIINMPHADIVKLIKDAGL-SVTLRIIPQ 102

>d1uewa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 114

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.2 bits (122), Expect = 1e-08
 Identities = 26/102 (25%), Positives = 44/102 (43%), Gaps = 5/102 (4%)

Query: 378 SENSEDSQEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIG---GFVVAHIVSGGLAEKE 434
           S  S  S +    V ++R++ NE  G  I    N  E          +  I+ G  A++ 
Sbjct: 2   SSGSSGSLQTSD-VVIHRKE-NEGFGFVIISSLNRPESGSTITVPHKIGRIIDGSPADRC 59

Query: 435 GCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISR 476
             L++GD I++VNGQ +  +       +I    L++ L I  
Sbjct: 60  AKLKVGDRILAVNGQSIINMPHADIVKLIKDAGLSVTLRIIP 101

>d1uita_ b.36.1.1 (A:) Discs large 5 protein KIAA0583 {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Discs large 5 protein KIAA0583
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.2 bits (169), Expect = 6e-15
 Identities = 21/99 (21%), Positives = 38/99 (38%), Gaps = 9/99 (9%)

Query: 567 RRPRSAICTFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKE 626
           R+ R  +     +  +KG     LG +IV G+       GI++  +      A    L+ 
Sbjct: 11  RKDRPYVEEPRHVKVQKGSE--PLGISIVSGEKG-----GIYVSKVTVGS-IAHQAGLEY 62

Query: 627 GDEILAINGQVCHDLTHLEAISLFKTIKNGSISLHICRR 665
           GD++L  NG      T  +A  +       +I++     
Sbjct: 63  GDQLLEFNGINLRSATEQQARLIIGQQC-DTITILAQYN 100

>d1uf1a_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 128

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.3 bits (169), Expect = 8e-15
 Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 5/95 (5%)

Query: 577 HTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQ 636
             +    G G+  LG TI GG +   G   I+I  +      AE   LK GD+IL +NG+
Sbjct: 22  KKVNLVLGDGR-SLGLTIRGGAEYGLG---IYITGVDPGS-EAEGSGLKVGDQILEVNGR 76

Query: 637 VCHDLTHLEAISLFKTIKNGSISLHICRRLKSKKT 671
              ++ H EA+ L K+ ++  +++    RL   +T
Sbjct: 77  SFLNILHDEAVRLLKSSRHLILTVKDVGRLPHART 111

>d1uf1a_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 128

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.2 bits (104), Expect = 5e-06
 Identities = 20/89 (22%), Positives = 37/89 (41%), Gaps = 7/89 (7%)

Query: 388 QTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVN 447
           +  V +   D    LG+ I        G      +  +  G  AE  G L++GD+I+ VN
Sbjct: 21  EKKVNLVLGD-GRSLGLTIRGGAEYGLG----IYITGVDPGSEAEGSG-LKVGDQILEVN 74

Query: 448 GQRLRGLTMTQAKSIISSGPLNMDLLISR 476
           G+    +   +A  ++ S   ++ L +  
Sbjct: 75  GRSFLNILHDEAVRLLKSSR-HLILTVKD 102

>d1qaua_ b.36.1.1 (A:) Neuronal nitric oxide synthase, NNOS {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 112

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Neuronal nitric oxide synthase, NNOS
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 67.8 bits (165), Expect = 2e-14
 Identities = 23/94 (24%), Positives = 43/94 (45%), Gaps = 5/94 (5%)

Query: 578 TIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQV 637
           ++   K     GLGF +      P     + I  ++  G A + G ++ GD ILA+N + 
Sbjct: 4   SVRLFKRKVG-GLGFLVKERVSKP----PVIISDLIRGGAAEQSGLIQAGDIILAVNDRP 58

Query: 638 CHDLTHLEAISLFKTIKNGSISLHICRRLKSKKT 671
             DL++  A+ + + I + +  + I R  +   T
Sbjct: 59  LVDLSYDSALEVLRGIASETHVVLILRGPEGFTT 92

>d1qaua_ b.36.1.1 (A:) Neuronal nitric oxide synthase, NNOS {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 112

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Neuronal nitric oxide synthase, NNOS
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 48.9 bits (116), Expect = 7e-08
 Identities = 21/114 (18%), Positives = 48/114 (42%), Gaps = 8/114 (7%)

Query: 391 VRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQR 450
           VR+ +R     LG  + +  +         +++ ++ GG AE+ G ++ GD I++VN + 
Sbjct: 5   VRLFKRKV-GGLGFLVKERVSK-----PPVIISDLIRGGAAEQSGLIQAGDIILAVNDRP 58

Query: 451 LRGLTMTQAKSIISSGPLNMDLLISRTSLKKSNAENEYNESHSREKKSKETRFS 504
           L  L+   A  ++        +++     +      E   + + +   K  R +
Sbjct: 59  LVDLSYDSALEVLRGIASETHVVLILRGPEGFTTHLE--TTFTGDGTPKTIRVT 110

>d1v5la_ b.36.1.1 (A:) Alpha-actinin-2 associated LIM protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Alpha-actinin-2 associated LIM protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 67.4 bits (164), Expect = 2e-14
 Identities = 25/81 (30%), Positives = 34/81 (41%), Gaps = 5/81 (6%)

Query: 585 PGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHL 644
           PG    GF + GG D  +    + I + +  G  A    L  GD ILAI+G     +TH 
Sbjct: 12  PGPAPWGFRLSGGIDFNQP---LVI-TRITPGSKAAAANLCPGDVILAIDGFGTESMTHA 67

Query: 645 EAISLFKTIKNGSISLHICRR 665
           +A    K      + L I R 
Sbjct: 68  DAQDRIKAASY-QLCLKIDRA 87

>d1v5la_ b.36.1.1 (A:) Alpha-actinin-2 associated LIM protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Alpha-actinin-2 associated LIM protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.7 bits (100), Expect = 1e-05
 Identities = 16/75 (21%), Positives = 30/75 (40%), Gaps = 5/75 (6%)

Query: 402 LGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKS 461
            G  ++   + ++      V+  I  G  A     L  GD I++++G     +T   A+ 
Sbjct: 17  WGFRLSGGIDFNQP----LVITRITPGSKAAA-ANLCPGDVILAIDGFGTESMTHADAQD 71

Query: 462 IISSGPLNMDLLISR 476
            I +    + L I R
Sbjct: 72  RIKAASYQLCLKIDR 86

>d1wifa_ b.36.1.1 (A:) hypothetical PDZ domain containing protein Uqcrc2 (4930408O21Rik) {Mouse (Mus musculus) [TaxId: 10090]} Length = 126

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: hypothetical PDZ domain containing protein Uqcrc2 (4930408O21Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 68.1 bits (166), Expect = 2e-14
 Identities = 25/122 (20%), Positives = 47/122 (38%), Gaps = 15/122 (12%)

Query: 544 STGSISGDEEETILTSTNFCTLPRRPRSAICTFHTIVFEKGPGKKGLGFTIVGGKDSPRG 603
           S+GS     E+  L+        +   S++          G    GLG  ++        
Sbjct: 2   SSGSSGSKNEKEQLSKA------KASVSSLNKVIQTKLTVGN--LGLGLVVIQNGP---- 49

Query: 604 AIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKNGS-ISLHI 662
              + I  +++ G AA DG L+ GD ++++        T  E + L + I  G+ + +  
Sbjct: 50  --YLQISHLINKGAAASDGILQPGDVLISVGHANVLGYTLREFLKLLQNITIGTVLQIKA 107

Query: 663 CR 664
            R
Sbjct: 108 YR 109

>d1wifa_ b.36.1.1 (A:) hypothetical PDZ domain containing protein Uqcrc2 (4930408O21Rik) {Mouse (Mus musculus) [TaxId: 10090]} Length = 126

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: hypothetical PDZ domain containing protein Uqcrc2 (4930408O21Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.6 bits (118), Expect = 6e-08
 Identities = 23/115 (20%), Positives = 47/115 (40%), Gaps = 10/115 (8%)

Query: 364 SSDYHSMMEISELSSENSEDSQEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVA 423
           S    S  E  +LS   +  S   +  ++      N  LG+ +         N     ++
Sbjct: 3   SGSSGSKNEKEQLSKAKASVSSLNKV-IQTKLTVGNLGLGLVVI-------QNGPYLQIS 54

Query: 424 HIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLN--MDLLISR 476
           H+++ G A  +G L+ GD +ISV    + G T+ +   ++ +  +   + +   R
Sbjct: 55  HLINKGAAASDGILQPGDVLISVGHANVLGYTLREFLKLLQNITIGTVLQIKAYR 109

>d1ujva_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.9 bits (163), Expect = 2e-14
 Identities = 28/96 (29%), Positives = 36/96 (37%), Gaps = 12/96 (12%)

Query: 571 SAICTFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEI 630
           S      T+   KG   +G GFTI       R         +           L EGD I
Sbjct: 6   SGQAELMTLTIVKGA--QGFGFTIADSPTGQR---------VKQILDIQGCPGLCEGDLI 54

Query: 631 LAINGQVCHDLTHLEAISLFKTIKNGS-ISLHICRR 665
           + IN Q   +L+H E + + K    GS  SL I R 
Sbjct: 55  VEINQQNVQNLSHTEVVDILKDCPIGSETSLIIHRG 90

>d1ujva_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (102), Expect = 4e-06
 Identities = 21/104 (20%), Positives = 36/104 (34%), Gaps = 13/104 (12%)

Query: 381 SEDSQEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELG 440
           S  S + + M     +   +  G  IA                 +      +    L  G
Sbjct: 3   SGSSGQAELMTLTIVKG-AQGFGFTIADSPTGQ----------RVKQILDIQGCPGLCEG 51

Query: 441 DEIISVNGQRLRGLTMTQAKSIISSGPLN--MDLLISRTSLKKS 482
           D I+ +N Q ++ L+ T+   I+   P+     L+I R S   S
Sbjct: 52  DLIVEINQQNVQNLSHTEVVDILKDCPIGSETSLIIHRGSGPSS 95

>d1wi2a_ b.36.1.1 (A:) PDZ domain containing protein 11, Pdzk11 {Mouse (Mus musculus) [TaxId: 10090]} Length = 104

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: PDZ domain containing protein 11, Pdzk11
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 67.3 bits (164), Expect = 2e-14
 Identities = 39/122 (31%), Positives = 56/122 (45%), Gaps = 25/122 (20%)

Query: 544 STGSISGDEEETILTSTNFCTLPRRPRSAICTFHTIVFEKGPGKKGLGFTIVGGKDSPRG 603
           S+GS SG+ E T         LPR           +  +K PG   LGF I GGK S  G
Sbjct: 2   SSGS-SGNNELTQF-------LPR----------IVTLKKPPGA-QLGFNIRGGKASQLG 42

Query: 604 AIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKNGSISLHIC 663
              IFI  ++ +   A    L+EGD++LA+N     D+ H +A+ + K      IS+ + 
Sbjct: 43  ---IFISKVIPDS-DAHRAGLQEGDQVLAVNDVDFQDIEHSKAVEILK--TAREISMRVR 96

Query: 664 RR 665
             
Sbjct: 97  FF 98

>d1wi2a_ b.36.1.1 (A:) PDZ domain containing protein 11, Pdzk11 {Mouse (Mus musculus) [TaxId: 10090]} Length = 104

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: PDZ domain containing protein 11, Pdzk11
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.1 bits (122), Expect = 1e-08
 Identities = 23/109 (21%), Positives = 48/109 (44%), Gaps = 7/109 (6%)

Query: 374 SELSSENSEDSQEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEK 433
           S  SS N+E +Q    +V + +     +LG  I   K S  G      ++ ++    A +
Sbjct: 2   SSGSSGNNELTQFLPRIVTLKKPP-GAQLGFNIRGGKASQLG----IFISKVIPDSDAHR 56

Query: 434 EGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISRTSLKKS 482
              L+ GD++++VN    + +  ++A  I+ +    + + +   S   S
Sbjct: 57  -AGLQEGDQVLAVNDVDFQDIEHSKAVEILKTAR-EISMRVRFFSGPSS 103

>d1vaea_ b.36.1.1 (A:) Rhophilin-2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 111

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Rhophilin-2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 60.4 bits (146), Expect = 7e-12
 Identities = 24/95 (25%), Positives = 38/95 (40%), Gaps = 10/95 (10%)

Query: 577 HTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQ 636
             I F    G   LGFT+ G          + +  +  +  +A     KEGD I++I G 
Sbjct: 17  RGIHFTVEEG--DLGFTLRGNTP-------VQVHFLDPHC-SASLAGAKEGDYIVSIQGV 66

Query: 637 VCHDLTHLEAISLFKTIKNGSISLHICRRLKSKKT 671
            C  LT  E + L K+     + + +   L S  +
Sbjct: 67  DCKWLTVSEVMKLLKSFGGEEVEMKVVSLLDSTSS 101

>d2z9ia1 b.36.1.4 (A:227-314) Protease PepD {Mycobacterium tuberculosis [TaxId: 1773]} Length = 88

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Protease PepD
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 48.8 bits (116), Expect = 5e-08
 Identities = 15/83 (18%), Positives = 31/83 (37%), Gaps = 6/83 (7%)

Query: 589 GLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAIS 648
            LG  +   KD+     G  I  ++  G AA  G + +G  +  ++ +  +    L A  
Sbjct: 4   SLGVQVTNDKDTL----GAKIVEVVAGGAAANAG-VPKGVVVTKVDDRPINSADALVAA- 57

Query: 649 LFKTIKNGSISLHICRRLKSKKT 671
           +       +++L         +T
Sbjct: 58  VRSKAPGATVALTFQDPSGGSRT 80

>d1fc6a3 b.36.1.3 (A:157-248) Photosystem II D1 C-terminal processing protease {Algae (Scenedesmus obliquus) [TaxId: 3088]} Length = 92

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Tail specific protease PDZ domain
domain: Photosystem II D1 C-terminal processing protease
species: Algae (Scenedesmus obliquus) [TaxId: 3088]

 Score = 46.5 bits (110), Expect = 3e-07
 Identities = 13/83 (15%), Positives = 30/83 (36%), Gaps = 4/83 (4%)

Query: 589 GLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAIS 648
           G+G  I     S +    + + +    G  AE    + GD I+ ++G     ++  +   
Sbjct: 6   GVGLEITYDGGSGKD---VVVLTPAPGG-PAEKAGARAGDVIVTVDGTAVKGMSLYDVSD 61

Query: 649 LFKTIKNGSISLHICRRLKSKKT 671
           L +   +  + + +        T
Sbjct: 62  LLQGEADSQVEVVLHAPGAPSNT 84

>d1r6ja_ b.36.1.1 (A:) Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 82

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntenin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.8 bits (108), Expect = 5e-07
 Identities = 20/97 (20%), Positives = 29/97 (29%), Gaps = 20/97 (20%)

Query: 566 PRRPRSAICTFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLK 625
              PR       TI   K      +GF                I SI+ +  +A    L 
Sbjct: 2   AMDPR-------TITMHKDS-TGHVGFIFKN----------GKITSIVKDS-SAARNGLL 42

Query: 626 EGDEILAINGQVCHDLTHLEAISLFKTIKNGSISLHI 662
               I  INGQ    L   +   +  T     +++ I
Sbjct: 43  TEHNICEINGQNVIGLKDSQIADILSTSGT-VVTITI 78

>d1r6ja_ b.36.1.1 (A:) Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 82

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntenin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (93), Expect = 5e-05
 Identities = 16/80 (20%), Positives = 27/80 (33%), Gaps = 12/80 (15%)

Query: 395 RRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGL 454
            +D    +G                  +  IV    A +   L     I  +NGQ + GL
Sbjct: 11  HKDSTGHVGFIFKN-----------GKITSIVKDSSAAR-NGLLTEHNICEINGQNVIGL 58

Query: 455 TMTQAKSIISSGPLNMDLLI 474
             +Q   I+S+    + + I
Sbjct: 59  KDSQIADILSTSGTVVTITI 78

>d2i6va1 b.36.1.5 (A:219-305) General secretion pathway protein C, EpsC {Vibrio cholerae [TaxId: 666]} Length = 87

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: EpsC C-terminal domain-like
domain: General secretion pathway protein C, EpsC
species: Vibrio cholerae [TaxId: 666]

 Score = 38.0 bits (88), Expect = 3e-04
 Identities = 16/77 (20%), Positives = 31/77 (40%), Gaps = 1/77 (1%)

Query: 400 EELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQA 459
           +E+  Y+   +   +  + G+ V+      L E  G L+ GD  +++NG  L    +   
Sbjct: 1   QEIFQYVRLSQVKRDDKVLGYRVSPGKDPVLFESIG-LQDGDMAVALNGLDLTDPNVMNT 59

Query: 460 KSIISSGPLNMDLLISR 476
                +    M L + R
Sbjct: 60  LFQSMNEMTEMSLTVER 76

>d1k32a1 b.36.1.3 (A:763-853) Tricorn protease {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 91

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Tail specific protease PDZ domain
domain: Tricorn protease
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 36.5 bits (84), Expect = 0.001
 Identities = 12/86 (13%), Positives = 25/86 (29%), Gaps = 2/86 (2%)

Query: 586 GKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLE 645
           G+    F + G       A      +  +     E G    G  I  I+G+     ++  
Sbjct: 1   GRIACDFKLDGDHYVVAKAYAGDYSNEGEKSPIFEYGIDPTGYLIEDIDGETVGAGSN-- 58

Query: 646 AISLFKTIKNGSISLHICRRLKSKKT 671
              +       S  + +  +   K+ 
Sbjct: 59  IYRVLSEKAGTSARIRLSGKGGDKRD 84

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	671
d1rgra_	93	Synaptic protein PSD-95 {Rat (Rattus norvegicus) [	99.72
d2fe5a1	92	Synapse-associated protein 102 {Human (Homo sapien	99.7
d1uhpa_	107	Hypothetical protein KIAA1095 {Human (Homo sapiens	99.7
d1i16a_	130	Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]	99.7
d1wf8a1	94	Neurabin-i {Human (Homo sapiens) [TaxId: 9606]}	99.69
d1t2ma1	92	Afadin {Human (Homo sapiens) [TaxId: 9606]}	99.69
d1um1a_	110	Hypothetical protein KIAA1849 {Human (Homo sapiens	99.68
d1ozia_	99	Phosphatase hPTP1e {Mouse (Mus musculus) [TaxId: 1	99.67
d2fcfa1	96	Multiple PDZ domain protein {Human (Homo sapiens)	99.67
d1m5za_	91	Glutamate receptor interacting protein {Rat (Rattu	99.66
d1whaa_	105	Scribble (KIAA0147) {Human (Homo sapiens) [TaxId:	99.65
d2fnea1	88	Multiple PDZ domain protein {Human (Homo sapiens)	99.65
d1ihja_	94	Inad {Fruit fly (Drosophila melanogaster) [TaxId:	99.64
d1n7ea_	95	Glutamate receptor-interacting protein 1, GRIP1 {R	99.64
d2f0aa1	92	Segment polarity protein dishevelled homolog Dvl-2	99.64
d1ujua_	111	Scribble (KIAA0147) {Human (Homo sapiens) [TaxId:	99.64
d1qava_	90	Syntrophin {Mouse (Mus musculus) [TaxId: 10090]}	99.63
d1rgwa_	85	Zasp (Cypher, Oracle 1) {Human (Homo sapiens) [Tax	99.63
d1tp5a1	102	Synaptic protein PSD-95 {Rat (Rattus norvegicus) [	99.63
d1p1da2	99	Glutamate receptor interacting protein {Rat (Rattu	99.63
d1x5qa1	97	Scribble (KIAA0147) {Human (Homo sapiens) [TaxId:	99.63
d1g9oa_	91	Na+/H+ exchanger regulatory factor, NHERF {Human (	99.63
d2fe5a1	92	Synapse-associated protein 102 {Human (Homo sapien	99.62
d1uepa_	103	Membrane associated guanylate kinase inverted-2 (M	99.61
d1wi2a_	104	PDZ domain containing protein 11, Pdzk11 {Mouse (M	99.61
d1rgra_	93	Synaptic protein PSD-95 {Rat (Rattus norvegicus) [	99.61
d1ueqa_	123	Membrane associated guanylate kinase inverted-2 (M	99.6
d1t2ma1	92	Afadin {Human (Homo sapiens) [TaxId: 9606]}	99.6
d1x6da1	107	Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]	99.6
d1q3oa_	104	Shank1, PDZ domain {Rat (Rattus norvegicus) [TaxId	99.59
d1wi4a1	96	Syntaxin binding protein 4 {Mouse (Mus musculus) [	99.59
d1um1a_	110	Hypothetical protein KIAA1849 {Human (Homo sapiens	99.59
d1qaua_	112	Neuronal nitric oxide synthase, NNOS {Rat (Rattus	99.59
d1uewa_	114	Membrane associated guanylate kinase inverted-2 (M	99.59
d2cssa1	108	Regulating synaptic membrane exocytosis protein 1,	99.58
d1ozia_	99	Phosphatase hPTP1e {Mouse (Mus musculus) [TaxId: 1	99.58
d1qava_	90	Syntrophin {Mouse (Mus musculus) [TaxId: 10090]}	99.57
d1wf8a1	94	Neurabin-i {Human (Homo sapiens) [TaxId: 9606]}	99.57
d1ihja_	94	Inad {Fruit fly (Drosophila melanogaster) [TaxId:	99.57
d1wfva_	103	Membrane associated guanylate kinase inverted-2 (M	99.57
d2h3la1	103	Erbin {Human (Homo sapiens) [TaxId: 9606]}	99.57
d1kwaa_	88	Cask/Lin-2 {Human (Homo sapiens) [TaxId: 9606]}	99.57
d1m5za_	91	Glutamate receptor interacting protein {Rat (Rattu	99.57
d2f5ya1	77	Regulator of G-protein signaling 3, RGS3 {Human (H	99.57
d1uita_	117	Discs large 5 protein KIAA0583 {Human (Homo sapien	99.57
d1uf1a_	128	KIAA1526 protein {Human (Homo sapiens) [TaxId: 960	99.57
d2fcfa1	96	Multiple PDZ domain protein {Human (Homo sapiens)	99.57
d1rzxa_	98	GTPase-binding domain of the cell polarity protein	99.57
d1w9ea1	85	Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.56
d1uhpa_	107	Hypothetical protein KIAA1095 {Human (Homo sapiens	99.56
d1ueza_	101	KIAA1526 protein {Human (Homo sapiens) [TaxId: 960	99.55
d1tp5a1	102	Synaptic protein PSD-95 {Rat (Rattus norvegicus) [	99.55
d1x45a1	85	Amyloid beta A4 precursor protein-binding family A	99.55
d1i16a_	130	Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]	99.55
d2fnea1	88	Multiple PDZ domain protein {Human (Homo sapiens)	99.54
d1n7ea_	95	Glutamate receptor-interacting protein 1, GRIP1 {R	99.54
d1rgwa_	85	Zasp (Cypher, Oracle 1) {Human (Homo sapiens) [Tax	99.53
d1r6ja_	82	Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.53
d1v62a_	117	Glutamate receptor interacting protein 2, GRIP2 (K	99.53
d1ujda_	117	Hypothetical protein KIAA0559 {Human (Homo sapiens	99.53
d1vb7a_	94	PDZ-LIM protein mystique {Mouse (Mus musculus) [Ta	99.53
d1whaa_	105	Scribble (KIAA0147) {Human (Homo sapiens) [TaxId:	99.53
d1g9oa_	91	Na+/H+ exchanger regulatory factor, NHERF {Human (	99.53
d1vaea_	111	Rhophilin-2 {Mouse (Mus musculus) [TaxId: 10090]}	99.52
d1p1da2	99	Glutamate receptor interacting protein {Rat (Rattu	99.52
d2csja1	104	Tight junction protein ZO-2, Tjp2 {Mouse (Mus musc	99.52
d1x5qa1	97	Scribble (KIAA0147) {Human (Homo sapiens) [TaxId:	99.52
d1wg6a_	127	Partitioning-defective 3-like protein, PAR3-L (RIK	99.52
d1x5na1	101	Harmonin {Human (Homo sapiens) [TaxId: 9606]}	99.52
d1ujua_	111	Scribble (KIAA0147) {Human (Homo sapiens) [TaxId:	99.52
d1va8a1	100	Maguk p55 subfamily member 5 {Mouse (Mus musculus)	99.51
d1v5qa_	122	Glutamate receptor interacting protein {Mouse (Mus	99.51
d1v6ba_	118	Harmonin {Mouse (Mus musculus) [TaxId: 10090]}	99.51
d1rzxa_	98	GTPase-binding domain of the cell polarity protein	99.51
d2f0aa1	92	Segment polarity protein dishevelled homolog Dvl-2	99.5
d2cs5a1	106	Tyrosine-protein phosphatase non-receptor type 4,	99.5
d1kwaa_	88	Cask/Lin-2 {Human (Homo sapiens) [TaxId: 9606]}	99.5
d1y7na1	79	Amyloid beta A4 precursor protein-binding family A	99.5
d1ufxa_	103	KIAA1526 protein {Human (Homo sapiens) [TaxId: 960	99.5
d1uita_	117	Discs large 5 protein KIAA0583 {Human (Homo sapien	99.49
d1wf7a_	103	Enigma homolog ENH {Mouse (Mus musculus) [TaxId: 1	99.49
d1x5ra1	99	Glutamate receptor interacting protein 2, GRIP2 (K	99.49
d1wh1a_	124	Hypothetical protein KIAA1095 {Human (Homo sapiens	99.49
d1wi2a_	104	PDZ domain containing protein 11, Pdzk11 {Mouse (M	99.48
d1x6da1	107	Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]	99.48
d1qaua_	112	Neuronal nitric oxide synthase, NNOS {Rat (Rattus	99.48
d1uf1a_	128	KIAA1526 protein {Human (Homo sapiens) [TaxId: 960	99.46
d1v62a_	117	Glutamate receptor interacting protein 2, GRIP2 (K	99.46
d1uewa_	114	Membrane associated guanylate kinase inverted-2 (M	99.46
d2cssa1	108	Regulating synaptic membrane exocytosis protein 1,	99.46
d1ueqa_	123	Membrane associated guanylate kinase inverted-2 (M	99.46
d2f5ya1	77	Regulator of G-protein signaling 3, RGS3 {Human (H	99.45
d1ueza_	101	KIAA1526 protein {Human (Homo sapiens) [TaxId: 960	99.45
d1wfva_	103	Membrane associated guanylate kinase inverted-2 (M	99.45
d1q3oa_	104	Shank1, PDZ domain {Rat (Rattus norvegicus) [TaxId	99.44
d1wi4a1	96	Syntaxin binding protein 4 {Mouse (Mus musculus) [	99.43
d1ujda_	117	Hypothetical protein KIAA0559 {Human (Homo sapiens	99.43
d2csja1	104	Tight junction protein ZO-2, Tjp2 {Mouse (Mus musc	99.42
d1uepa_	103	Membrane associated guanylate kinase inverted-2 (M	99.42
d1wifa_	126	hypothetical PDZ domain containing protein Uqcrc2	99.42
d2h3la1	103	Erbin {Human (Homo sapiens) [TaxId: 9606]}	99.42
d1vb7a_	94	PDZ-LIM protein mystique {Mouse (Mus musculus) [Ta	99.42
d1va8a1	100	Maguk p55 subfamily member 5 {Mouse (Mus musculus)	99.42
d1r6ja_	82	Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.42
d1y7na1	79	Amyloid beta A4 precursor protein-binding family A	99.41
d1v5la_	103	Alpha-actinin-2 associated LIM protein {Mouse (Mus	99.4
d1w9ea1	85	Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.4
d1v5qa_	122	Glutamate receptor interacting protein {Mouse (Mus	99.38
d2cs5a1	106	Tyrosine-protein phosphatase non-receptor type 4,	99.38
d1wg6a_	127	Partitioning-defective 3-like protein, PAR3-L (RIK	99.38
d1x45a1	85	Amyloid beta A4 precursor protein-binding family A	99.37
d1x5ra1	99	Glutamate receptor interacting protein 2, GRIP2 (K	99.37
d1v6ba_	118	Harmonin {Mouse (Mus musculus) [TaxId: 10090]}	99.36
d1x5na1	101	Harmonin {Human (Homo sapiens) [TaxId: 9606]}	99.36
d1wf7a_	103	Enigma homolog ENH {Mouse (Mus musculus) [TaxId: 1	99.34
d1ujva_	96	Membrane associated guanylate kinase inverted-2 (M	99.33
d1ufxa_	103	KIAA1526 protein {Human (Homo sapiens) [TaxId: 960	99.32
d1v5la_	103	Alpha-actinin-2 associated LIM protein {Mouse (Mus	99.3
d1vaea_	111	Rhophilin-2 {Mouse (Mus musculus) [TaxId: 10090]}	99.3
d1fc6a3	92	Photosystem II D1 C-terminal processing protease {	99.28
d1wifa_	126	hypothetical PDZ domain containing protein Uqcrc2	99.26
d1wh1a_	124	Hypothetical protein KIAA1095 {Human (Homo sapiens	99.25
d1fc6a3	92	Photosystem II D1 C-terminal processing protease {	99.17
d1ujva_	96	Membrane associated guanylate kinase inverted-2 (M	99.11
d2z9ia1	88	Protease PepD {Mycobacterium tuberculosis [TaxId:	98.94
d1ky9b2	88	Protease Do (DegP, HtrA), C-terminal domains {Esch	98.83
d2z9ia1	88	Protease PepD {Mycobacterium tuberculosis [TaxId:	98.83
d1k32a1	91	Tricorn protease {Archaeon Thermoplasma acidophilu	98.65
d1lcya1	100	Mitochondrial serine protease HtrA2 {Human (Homo s	98.65
d1ky9b2	88	Protease Do (DegP, HtrA), C-terminal domains {Esch	98.59
d1sota1	99	Stress sensor protease DegS, C-terminal domain {Es	98.45
d1k32a1	91	Tricorn protease {Archaeon Thermoplasma acidophilu	98.45
d2hgaa1	103	Uncharacterized protein MTH1368 {Methanobacterium	98.44
d1lcya1	100	Mitochondrial serine protease HtrA2 {Human (Homo s	98.4
d1ky9a1	94	Protease Do (DegP, HtrA), C-terminal domains {Esch	98.39
d1sota1	99	Stress sensor protease DegS, C-terminal domain {Es	98.32
d2i6va1	87	General secretion pathway protein C, EpsC {Vibrio	98.32
d1ky9a1	94	Protease Do (DegP, HtrA), C-terminal domains {Esch	98.19
d2i6va1	87	General secretion pathway protein C, EpsC {Vibrio	98.11
d2hgaa1	103	Uncharacterized protein MTH1368 {Methanobacterium	97.98

>d1rgra_ b.36.1.1 (A:) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synaptic protein PSD-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.72  E-value=1.8e-17  Score=143.09  Aligned_cols=89  Identities=38%  Similarity=0.665  Sum_probs=79.8

Q ss_pred             eeeEEEeeCCCCCcccEEEecCCCCCC--CCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhc
Q psy1156         576 FHTIVFEKGPGKKGLGFTIVGGKDSPR--GAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTI  653 (671)
Q Consensus       576 ~~~V~L~K~~g~~~LGfsL~Gg~ds~~--g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~s  653 (671)
                      +++|+|.|..  .+|||+|.|+.+.+.  ...||||.+|.++|+|+++|+|++||+|++|||++|.+++|.+|+++|+++
T Consensus         2 ~~~V~l~k~~--~glG~~i~gg~~~~~~~~~~gi~I~~V~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~   79 (93)
T d1rgra_           2 YEEITLERGN--SGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEA   79 (93)
T ss_dssp             EEEEEEECCS--SCCSEEECCCSSSCSCTTCCCCCEEEECTTSHHHHHCCCCTTCEEEEETTEECSSSCHHHHHHHHHHT
T ss_pred             CEEEEEEeCC--CcCCEEEEeecCCCCcCCCCCEEEEEECCCChHHhcCCCCcCcEEEEECCEECCCCCHHHHHHHHHcC
Confidence            4689999875  789999999876543  356999999999999999999999999999999999999999999999988


Q ss_pred             CCCcEEEEEEeCCC
Q psy1156         654 KNGSISLHICRRLK  667 (671)
Q Consensus       654 g~~~VtL~V~Rr~~  667 (671)
                      + +.|.|+|.|+.+
T Consensus        80 ~-~~v~L~v~R~~p   92 (93)
T d1rgra_          80 G-SIVRLYVMRRKP   92 (93)
T ss_dssp             T-TEEEEEEECSCC
T ss_pred             C-CEEEEEEEeCCC
Confidence            5 799999998764

>d2fe5a1 b.36.1.1 (A:223-314) Synapse-associated protein 102 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synapse-associated protein 102
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=4.1e-17  Score=140.67  Aligned_cols=88  Identities=36%  Similarity=0.647  Sum_probs=78.9

Q ss_pred             eeeEEEeeCCCCCcccEEEecCCCCC--CCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhc
Q psy1156         576 FHTIVFEKGPGKKGLGFTIVGGKDSP--RGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTI  653 (671)
Q Consensus       576 ~~~V~L~K~~g~~~LGfsL~Gg~ds~--~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~s  653 (671)
                      ...|+|.|.+  .+|||+|.|+.+..  .+..|+||+.|.++|||+++|+|++||+|++|||++|.+++|++|+++|+++
T Consensus         2 v~~V~L~k~~--~glG~~i~gg~~~~~~~~~~gi~I~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~e~~~~lk~~   79 (92)
T d2fe5a1           2 IMEVNLLKGP--KGLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNT   79 (92)
T ss_dssp             EEEEEEECCT--TCSCEEEEECBTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCBHHHHHHHHHTC
T ss_pred             EEEEEEEECC--CccCEEEEeecCCccCCCCCCEEEEEECCCCChhhcCCCCCCCEEEEeCCeecCCCCHHHHHHHHHcC
Confidence            4679999976  78999999987654  2457999999999999999999999999999999999999999999999998


Q ss_pred             CCCcEEEEEEeCC
Q psy1156         654 KNGSISLHICRRL  666 (671)
Q Consensus       654 g~~~VtL~V~Rr~  666 (671)
                      + +.|+|+|.|+.
T Consensus        80 ~-~~v~L~v~Rpg   91 (92)
T d2fe5a1          80 S-DMVYLKVAKPG   91 (92)
T ss_dssp             C-SEEEEEEECCC
T ss_pred             C-CEEEEEEECCC
Confidence            5 78999999874

>d1uhpa_ b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1095
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=5.5e-17  Score=143.71  Aligned_cols=93  Identities=35%  Similarity=0.591  Sum_probs=81.6

Q ss_pred             ceeeEEEeeCCCCCcccEEEecCCCCC-----CCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHH
Q psy1156         575 TFHTIVFEKGPGKKGLGFTIVGGKDSP-----RGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISL  649 (671)
Q Consensus       575 ~~~~V~L~K~~g~~~LGfsL~Gg~ds~-----~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~l  649 (671)
                      ..++|+|.|..  .+|||+|.|+.+..     ....||||..|.++|+|+++|+|++||+||+|||++|.+++|++|+++
T Consensus         8 ~~~~V~l~k~~--~~lGf~i~GG~~~~~~~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNg~~v~~~t~~eav~~   85 (107)
T d1uhpa_           8 KSLTLVLHRDS--GSLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRIIEVNGRDLSRATHDQAVEA   85 (107)
T ss_dssp             EEEEEEECCSS--SCCSEEEECCCSCCCCTTSSCSCCCEEEEECSSSHHHHTTCCCSSCEEEEETTEECTTCCHHHHHHH
T ss_pred             CEEEEEEEECC--CccCEEEEecccCCCcccccCCCCEEEEEECCCCHHHHhCCCcceeEEeEECCEECCCCCHHHHHHH
Confidence            45789998876  78999999986543     235689999999999999999999999999999999999999999999


Q ss_pred             HHhcCCCcEEEEEEeCCCCCC
Q psy1156         650 FKTIKNGSISLHICRRLKSKK  670 (671)
Q Consensus       650 LK~sg~~~VtL~V~Rr~~~~~  670 (671)
                      |++++ ..|.|+|.|+....+
T Consensus        86 lk~~~-~~v~l~v~r~~~~Ps  105 (107)
T d1uhpa_          86 FKTAK-EPIVVQVLRRTSGPS  105 (107)
T ss_dssp             HHHCC-SSEEEEEEECCSSCS
T ss_pred             HHhCC-CcEEEEEEECCCCcC
Confidence            99985 789999999876543

>d1i16a_ b.36.1.2 (A:) Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Interleukin 16
domain: Interleukin 16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=3e-17  Score=150.09  Aligned_cols=93  Identities=31%  Similarity=0.548  Sum_probs=83.9

Q ss_pred             ceeeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcC
Q psy1156         575 TFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIK  654 (671)
Q Consensus       575 ~~~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg  654 (671)
                      ..+.|+|.|..  .+|||+|.||.+...+..||||..|.++|+|+++|+|++||+||+|||++|.+++|++|+++|+.++
T Consensus        29 ~~~~V~l~k~~--~glG~~i~gg~~~~~~~~~i~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~~~~~t~~eav~~l~~~~  106 (130)
T d1i16a_          29 TVCTVTLEKMS--AGLGFSLEGGKGSLHGDKPLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKALP  106 (130)
T ss_dssp             EEEEEEEETTS--SSTTEEEECCCCCSSSCCCCEEEEECSSCCCSSSCCCCTTCCEEECSSCBGGGSCHHHHHHHHHTSC
T ss_pred             eEEEEEEEeCC--CccCEEEeeccCCCCCCCCEEEEEECCCChHHhcCCcccCceeeeECCeecCCCcHHHHHHHHHcCC
Confidence            46778898876  6899999999887767789999999999999999999999999999999999999999999999987


Q ss_pred             CCcEEEEEEeCCCCC
Q psy1156         655 NGSISLHICRRLKSK  669 (671)
Q Consensus       655 ~~~VtL~V~Rr~~~~  669 (671)
                      .+.|+|+|.|+....
T Consensus       107 ~~~v~l~v~r~~~~~  121 (130)
T d1i16a_         107 DGPVTIVIRRKSLQS  121 (130)
T ss_dssp             SSEEEEEEEEESSCC
T ss_pred             CCeEEEEEEcCCCCC
Confidence            668999999987543

>d1wf8a1 b.36.1.1 (A:8-101) Neurabin-i {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Neurabin-i
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=4.3e-17  Score=141.13  Aligned_cols=90  Identities=28%  Similarity=0.515  Sum_probs=78.8

Q ss_pred             ceeeEEEeeCCCCCcccEEEecCCC---CCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHH
Q psy1156         575 TFHTIVFEKGPGKKGLGFTIVGGKD---SPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFK  651 (671)
Q Consensus       575 ~~~~V~L~K~~g~~~LGfsL~Gg~d---s~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK  651 (671)
                      +.++|+|.|..  .+|||+|.|+..   ......||||++|.++|||+++|+|++||+|++|||+++.+++|.+|+++|+
T Consensus         2 e~~~V~L~k~~--~glG~~i~g~~~~~~~~~~~~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~~l~   79 (94)
T d1wf8a1           2 ELFPVELEKDE--DGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQNFAATVLR   79 (94)
T ss_dssp             EEEEEEEECBT--TBSCEEEEEEEESCCTTCCEEEEEEEEECTTCHHHHHCSSCTTCBEEEETTEECBSCCHHHHHHHHH
T ss_pred             eEEEEEEEeCC--CCcCEEEEeccCCCCCCcCCCCEEEEEECCCChHHHcCCCCcCCEEEEECCEECCCCCHHHHHHHHH
Confidence            35689999976  689999987532   2234568999999999999999999999999999999999999999999999


Q ss_pred             hcCCCcEEEEEEeCCC
Q psy1156         652 TIKNGSISLHICRRLK  667 (671)
Q Consensus       652 ~sg~~~VtL~V~Rr~~  667 (671)
                      +++ +.|+|+|.|+.+
T Consensus        80 ~~~-~~v~L~V~R~kP   94 (94)
T d1wf8a1          80 NTK-GNVRFVIGREKP   94 (94)
T ss_dssp             HCC-SEEEEEEEEECC
T ss_pred             cCC-CeEEEEEEeCCC
Confidence            985 799999999864

>d1t2ma1 b.36.1.1 (A:2-93) Afadin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Afadin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=5.7e-17  Score=139.88  Aligned_cols=88  Identities=28%  Similarity=0.585  Sum_probs=78.8

Q ss_pred             ceeeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcC
Q psy1156         575 TFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIK  654 (671)
Q Consensus       575 ~~~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg  654 (671)
                      +..+|++.+.   .+|||+|.++.+...+..||||+.|.++|+|+++|+|++||+|++|||++|.+++|++|+++|++++
T Consensus         4 ei~~v~l~~~---~glG~~i~g~~~~~~~~~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~ea~~~l~~~~   80 (92)
T d1t2ma1           4 EIITVTLKKQ---NGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAELMTRTS   80 (92)
T ss_dssp             EEEEEEEECS---SSCCEEEEEECCSSCCSCEEEEEEECTTSHHHHHTCCCSSEEEEEETTEECTTCCHHHHHHHHHSCC
T ss_pred             eEEEEEEeCC---CccCEEEEeecCCCCCCCCEEEEEEcCCChHHhcCCCCcccEeeeeCCeecCCCCHHHHHHHHHcCC
Confidence            3456777665   5699999998877666779999999999999999999999999999999999999999999999985


Q ss_pred             CCcEEEEEEeCC
Q psy1156         655 NGSISLHICRRL  666 (671)
Q Consensus       655 ~~~VtL~V~Rr~  666 (671)
                       +.|+|+|.|+.
T Consensus        81 -~~v~L~v~R~g   91 (92)
T d1t2ma1          81 -SVVTLEVAKQG   91 (92)
T ss_dssp             -SEEEEEEEECC
T ss_pred             -CeEEEEEEeCC
Confidence             88999999975

>d1um1a_ b.36.1.1 (A:) Hypothetical protein KIAA1849 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1849
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=1.2e-16  Score=142.05  Aligned_cols=89  Identities=33%  Similarity=0.578  Sum_probs=81.9

Q ss_pred             ceeeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcC
Q psy1156         575 TFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIK  654 (671)
Q Consensus       575 ~~~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg  654 (671)
                      ..++|+|.|..  .+|||.|.++.+...+..||||.+|.++|||+++|+|++||+||+|||++|.+++|.+|+++|+.++
T Consensus         8 ~~~~V~l~k~~--~glG~~i~~~~~~~~~~~~i~V~~v~~gg~A~~~G~L~~GD~Il~INg~~v~~~~~~ev~~llk~~~   85 (110)
T d1um1a_           8 YVFTVELERGP--SGLGMGLIDGMHTHLGAPGLYIQTLLPGSPAAADGRLSLGDRILEVNGSSLLGLGYLRAVDLIRHGG   85 (110)
T ss_dssp             CEEEEEEECCT--TCCCEEEEETTTSTTCCSSEEEEEECTTSHHHHHSCCCTTCEEEEESSCBCSSCCHHHHHHHHHTCC
T ss_pred             CEEEEEEEECC--CCCCEEEEeecCCCCCCCCEEEEEECCCCHHHHcCCCccCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            46799999987  6899999999887767779999999999999999999999999999999999999999999999985


Q ss_pred             CCcEEEEEEeCC
Q psy1156         655 NGSISLHICRRL  666 (671)
Q Consensus       655 ~~~VtL~V~Rr~  666 (671)
                       ..|.|+|.|..
T Consensus        86 -~~v~l~v~r~~   96 (110)
T d1um1a_          86 -KKMRFLVAKSD   96 (110)
T ss_dssp             -SEEEEEEECCC
T ss_pred             -CeEEEEEEeCC
Confidence             88999998865

>d1ozia_ b.36.1.1 (A:) Phosphatase hPTP1e {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Phosphatase hPTP1e
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.67  E-value=1.9e-16  Score=137.96  Aligned_cols=89  Identities=26%  Similarity=0.426  Sum_probs=77.7

Q ss_pred             ceeeEEEeeCCCCCcccEEEecCCC-----CCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHH
Q psy1156         575 TFHTIVFEKGPGKKGLGFTIVGGKD-----SPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISL  649 (671)
Q Consensus       575 ~~~~V~L~K~~g~~~LGfsL~Gg~d-----s~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~l  649 (671)
                      ..++|+|.|..  .+|||+|.+...     ......||||.+|.++|+|+++|+|++||+||+|||++|.+++|++|+++
T Consensus         4 ~~~~V~L~k~~--~~lG~~i~~~~~~~g~~~~~~~~~i~V~~V~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~~a~~~   81 (99)
T d1ozia_           4 DTFEVELAKTD--GSLGISVTVLFDKGGVNTSVRHGGIYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVET   81 (99)
T ss_dssp             CEEEEEEECCS--SSCSEEEESCCSSSCSSCSSSCCCEEEEEECSSSHHHHHTCCCTTCEEEEETTEECSSCCHHHHHHH
T ss_pred             CEEEEEEEECC--CCCcEEEEeeccCCCcccccCCCCEEEEEECCCChHHhcCCCCccCEEEEECCEEcCCCCHHHHHHH
Confidence            45789999875  689999986433     22345689999999999999999999999999999999999999999999


Q ss_pred             HHhcCCCcEEEEEEeCC
Q psy1156         650 FKTIKNGSISLHICRRL  666 (671)
Q Consensus       650 LK~sg~~~VtL~V~Rr~  666 (671)
                      |++++ ..|+|+|.|+.
T Consensus        82 lk~~~-~~v~L~v~R~~   97 (99)
T d1ozia_          82 LRNTG-QVVHLLLEKGQ   97 (99)
T ss_dssp             HHHSC-SEEEEEEECCC
T ss_pred             HHCCC-CeEEEEEEeCC
Confidence            99985 78999998874

>d2fcfa1 b.36.1.1 (A:1148-1243) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Multiple PDZ domain protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=1.5e-16  Score=138.01  Aligned_cols=88  Identities=28%  Similarity=0.512  Sum_probs=73.8

Q ss_pred             eeeEEEeeCCCCCcccEEEecCCCCC------CCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHH
Q psy1156         576 FHTIVFEKGPGKKGLGFTIVGGKDSP------RGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISL  649 (671)
Q Consensus       576 ~~~V~L~K~~g~~~LGfsL~Gg~ds~------~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~l  649 (671)
                      .+.|.|.|.+ ..+|||+|.|+.+..      ....|+||.+|.++|||+++|+|++||+||+|||++|.+++|++|+++
T Consensus         2 pr~V~l~k~~-~~~lG~~i~gg~~~~~~~~~~~~~~gi~V~~v~~~s~A~~~G~L~~GD~Il~VNg~~v~~~t~~ea~~~   80 (96)
T d2fcfa1           2 PRRVELWREP-SKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEA   80 (96)
T ss_dssp             CEEEEECCCC--CCCCEEEECCCC-------------EEEEEECSSSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHH
T ss_pred             CEEEEEEeCC-CCCCCEEEEcccCCCcccccccCCCCEEEEEECCCCHHHHcCCCcCCCEEEEECCEECCCCCHHHHHHH
Confidence            3689999986 479999999876532      123589999999999999999999999999999999999999999999


Q ss_pred             HHhcCCCcEEEEEEeC
Q psy1156         650 FKTIKNGSISLHICRR  665 (671)
Q Consensus       650 LK~sg~~~VtL~V~Rr  665 (671)
                      |++++ +.|+|+|+|-
T Consensus        81 lk~~~-~~v~L~V~r~   95 (96)
T d2fcfa1          81 IRKAG-NPVVFMVQSI   95 (96)
T ss_dssp             HHTCC-SSEEEEEECC
T ss_pred             HHcCC-CeEEEEEEEc
Confidence            99985 7899999873

>d1m5za_ b.36.1.1 (A:) Glutamate receptor interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.66  E-value=4e-16  Score=134.40  Aligned_cols=86  Identities=24%  Similarity=0.421  Sum_probs=78.4

Q ss_pred             ceeeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcC
Q psy1156         575 TFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIK  654 (671)
Q Consensus       575 ~~~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg  654 (671)
                      +.+.|+|.|..+..+|||+|.++.+.    .|+||+.|.++|+|+++| |++||+|++|||++|.+++|.+++.+|++++
T Consensus         6 e~~~v~l~k~~~~~~~Gf~i~~~~~~----~g~~V~~V~~~g~A~~~g-L~~GD~Il~VNg~~v~~~t~~~~~~~l~~~~   80 (91)
T d1m5za_           6 ELHKVTLYKDSGMEDFGFSVADGLLE----KGVYVKNIRPAGPGDLGG-LKPYDRLLQVNHVRTRDFDCCLVVPLIAESG   80 (91)
T ss_dssp             EEEEEEEECCTTCSSSSEEEEECTTS----SCEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHTST
T ss_pred             ceEEEEEEECCCCCceeEEEeccCCC----CCEEEEEECCCChhHhCc-CCCCCEEEEECCEECCCCCHHHHHHHHHCCC
Confidence            56789999987667899999988664    489999999999999999 9999999999999999999999999999885


Q ss_pred             CCcEEEEEEeCC
Q psy1156         655 NGSISLHICRRL  666 (671)
Q Consensus       655 ~~~VtL~V~Rr~  666 (671)
                       ..|.|+|.|.+
T Consensus        81 -~~v~L~v~R~P   91 (91)
T d1m5za_          81 -NKLDLVISRNP   91 (91)
T ss_dssp             -TEEEEEEEECC
T ss_pred             -CEEEEEEEECc
Confidence             78999999864

>d1whaa_ b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=3e-16  Score=138.51  Aligned_cols=92  Identities=36%  Similarity=0.595  Sum_probs=80.8

Q ss_pred             ceeeEEEeeCCCCCcccEEEecCCCCC---CCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHH
Q psy1156         575 TFHTIVFEKGPGKKGLGFTIVGGKDSP---RGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFK  651 (671)
Q Consensus       575 ~~~~V~L~K~~g~~~LGfsL~Gg~ds~---~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK  651 (671)
                      ..+.|.|.|..  .+|||+|.|+.+..   ....||||.+|.++|+|+++|+|++||+||+|||++|.+++|++|+++|+
T Consensus         7 ~~~~v~l~k~~--~glGf~i~gg~~~~~~~~~~~gi~V~~v~~gs~A~~~G~L~~GD~Il~INg~~v~~~~~~ev~~~l~   84 (105)
T d1whaa_           7 GRHVACLARSE--RGLGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGDRVLSINGVDVTEARHDHAVSLLT   84 (105)
T ss_dssp             EEEEEEECCCT--TCCSCEEECCTTSCCSSTTCCSCEEEECCTTSSHHHHSSCCTTCEEEEESSCBCTTCCHHHHHHHHT
T ss_pred             CCEEEEEEECC--CccCEEEEeccCCcccccCCCCEEEEEEcCCCchhhcCCccCCCEEEEECCEEcCCCcHHHHHHHHH
Confidence            45678888876  67999999987643   24568999999999999999999999999999999999999999999999


Q ss_pred             hcCCCcEEEEEEeCCCCC
Q psy1156         652 TIKNGSISLHICRRLKSK  669 (671)
Q Consensus       652 ~sg~~~VtL~V~Rr~~~~  669 (671)
                      +++ +.|.|+|.|+..+.
T Consensus        85 ~~~-~~v~l~v~R~~~~~  101 (105)
T d1whaa_          85 AAS-PTIALLLEREAGSG  101 (105)
T ss_dssp             SCC-SCEEEEEEECCCCC
T ss_pred             cCC-CeEEEEEEECCCCc
Confidence            885 78999999987643

>d2fnea1 b.36.1.1 (A:1955-2042) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Multiple PDZ domain protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=1.5e-16  Score=136.20  Aligned_cols=86  Identities=47%  Similarity=0.897  Sum_probs=77.7

Q ss_pred             ceeeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcC
Q psy1156         575 TFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIK  654 (671)
Q Consensus       575 ~~~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg  654 (671)
                      ..++|+|.|.+  .+|||+|.++.+...+..|+||..|.++|+|+++|.|++||+|++|||++|.+++|++|+++|++++
T Consensus         2 ~~~~V~l~K~~--~~lG~~i~~g~~~~~~~~~i~I~~v~~~g~A~~~g~l~~GD~Il~INg~~v~~~~~~~v~~~l~~~~   79 (88)
T d2fnea1           2 QCKSITLERGP--DGLGFSIVGGYGSPHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRTK   79 (88)
T ss_dssp             EEEEEEECCBT--TBTSEEEEEEEEETTEEEEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHCC
T ss_pred             eEEEEEEEeCC--CccCEEEEeccCCCCCCcCEEEEEEcCCChHHHhCCCcCCcEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            45789998876  6899999988776655679999999999999999999999999999999999999999999999985


Q ss_pred             CCcEEEEEE
Q psy1156         655 NGSISLHIC  663 (671)
Q Consensus       655 ~~~VtL~V~  663 (671)
                       +.|+|+|.
T Consensus        80 -~~v~L~Vl   87 (88)
T d2fnea1          80 -GTVTLMVL   87 (88)
T ss_dssp             -SSEEEEEE
T ss_pred             -CcEEEEEE
Confidence             88999885

>d1ihja_ b.36.1.1 (A:) Inad {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Inad
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.64  E-value=3.4e-16  Score=135.21  Aligned_cols=87  Identities=37%  Similarity=0.525  Sum_probs=76.7

Q ss_pred             eeeEEEeeCCCCCcccEEEecCCCCC---CCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHh
Q psy1156         576 FHTIVFEKGPGKKGLGFTIVGGKDSP---RGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKT  652 (671)
Q Consensus       576 ~~~V~L~K~~g~~~LGfsL~Gg~ds~---~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~  652 (671)
                      .+.|+|.|.+ ..+|||+|.++.+..   ....|+||..|.|+|||+++|+|++||+|++|||++|.+++|++|+++|++
T Consensus         4 i~~V~L~k~~-~~~lG~~i~gg~~~~~~~~~~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~ll~~   82 (94)
T d1ihja_           4 IHMVTLDKTG-KKSFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKE   82 (94)
T ss_dssp             EEEEEEECTT-SSSCCEEEEEEEECCSSSCCEEEEEEEEECTTSHHHHHCSCCTTCEEEEETTEECTTCCHHHHHHHHHH
T ss_pred             EEEEEEEeCC-CCCcCEEEeccccCCCCccCCCCEEEEEECCCCHHHHhCCCChhcEEEEECCEECCCCCHHHHHHHHHc
Confidence            4678998875 478999999876543   234589999999999999999999999999999999999999999999999


Q ss_pred             cCCCcEEEEEEe
Q psy1156         653 IKNGSISLHICR  664 (671)
Q Consensus       653 sg~~~VtL~V~R  664 (671)
                      ++ ..|+|+|.|
T Consensus        83 ~~-~~v~L~V~R   93 (94)
T d1ihja_          83 AD-FKIELEIQT   93 (94)
T ss_dssp             SC-SEEEEEEEE
T ss_pred             CC-CEEEEEEEe
Confidence            85 789999976

>d1n7ea_ b.36.1.1 (A:) Glutamate receptor-interacting protein 1, GRIP1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor-interacting protein 1, GRIP1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.64  E-value=7.9e-16  Score=133.42  Aligned_cols=89  Identities=28%  Similarity=0.376  Sum_probs=78.7

Q ss_pred             ceeeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcC
Q psy1156         575 TFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIK  654 (671)
Q Consensus       575 ~~~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg  654 (671)
                      ..++|.|.|..  ++|||+|.++.+..   .|+||..|.++|+|+++|+|++||+|++|||++|.+++|++++++|++++
T Consensus         3 ~i~tV~l~k~~--~~lG~~i~g~~~~~---~~v~I~~I~~g~~A~~~g~L~~GD~Il~INg~~v~~~~~~ev~~~l~~~~   77 (95)
T d1n7ea_           3 IIYTVELKRYG--GPLGITISGTEEPF---DPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAG   77 (95)
T ss_dssp             CEEEEEEECTT--SCCCEEEECCSSTT---SCCEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHTCC
T ss_pred             EEEEEEEEECC--CcEeEEEEecccCC---CCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            35689998864  78999999876543   57999999999999999999999999999999999999999999999985


Q ss_pred             CCcEEEEEEeCCCCC
Q psy1156         655 NGSISLHICRRLKSK  669 (671)
Q Consensus       655 ~~~VtL~V~Rr~~~~  669 (671)
                       +.|.|+|.|.....
T Consensus        78 -~~v~l~v~r~~~~~   91 (95)
T d1n7ea_          78 -ETVTLKIKKQTDAQ   91 (95)
T ss_dssp             -SEEEEEEECCCCCC
T ss_pred             -CeEEEEEEECCCCc
Confidence             78999999887543

>d2f0aa1 b.36.1.1 (A:251-342) Segment polarity protein dishevelled homolog Dvl-2 {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Segment polarity protein dishevelled homolog Dvl-2
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=99.64  E-value=2.7e-16  Score=135.76  Aligned_cols=87  Identities=30%  Similarity=0.534  Sum_probs=76.0

Q ss_pred             eeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcC--
Q psy1156         577 HTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIK--  654 (671)
Q Consensus       577 ~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg--  654 (671)
                      .+|+|.+.. .++|||+|.|+.+.. +..||||.+|.|+|||+++|+|++||+|++|||+++.+++|++|+++|+.+.  
T Consensus         3 ~tV~l~k~~-~~~lGi~i~gg~~~~-~~~~i~I~~I~~gg~A~~~G~L~~GD~Il~VNg~~l~~~s~~eav~llk~~~~~   80 (92)
T d2f0aa1           3 ITVTLNMEK-YNFLGISIVGQSNER-GDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDINFENMSNDDAVRVLRDIVHK   80 (92)
T ss_dssp             EEEEECHHH-HCSCCEEEECCCCTT-SCCCEEEEEEBTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHHHHS
T ss_pred             EEEEEEeCC-CCccCEEEEccCCCC-CCCCEEEEEECCCCcHHHcCCCCCccEEEEECCEECCCCCHHHHHHHHHhccCC
Confidence            578888865 368999999987643 4569999999999999999999999999999999999999999999998752  


Q ss_pred             CCcEEEEEEeC
Q psy1156         655 NGSISLHICRR  665 (671)
Q Consensus       655 ~~~VtL~V~Rr  665 (671)
                      .+.|+|+|.|.
T Consensus        81 ~~~v~L~V~R~   91 (92)
T d2f0aa1          81 PGPIVLTVAKL   91 (92)
T ss_dssp             SSCEEEEEECC
T ss_pred             CCcEEEEEEeC
Confidence            35799999884

>d1ujua_ b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=1.3e-16  Score=142.23  Aligned_cols=92  Identities=32%  Similarity=0.583  Sum_probs=80.9

Q ss_pred             ceeeEEEeeCCCCCcccEEEecCCCCCC------CCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHH
Q psy1156         575 TFHTIVFEKGPGKKGLGFTIVGGKDSPR------GAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAIS  648 (671)
Q Consensus       575 ~~~~V~L~K~~g~~~LGfsL~Gg~ds~~------g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~  648 (671)
                      ..+.|+|.|.+ ..+|||+|.|+.+...      ...||||..|.++|||+++|+|++||+||+|||++|.+++|++|++
T Consensus         9 ~~~~V~l~k~~-~~~lG~~i~gG~~~~~~~~~~~~~~gi~I~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~t~~ea~~   87 (111)
T d1ujua_           9 GLRELCIQKAP-GERLGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRLRVGLRLLEVNQQSLLGLTHGEAVQ   87 (111)
T ss_dssp             SSSCEEEECCT-TCCCCEEEECCSSSSCSCSSCTTCCCCEEEEECTTSHHHHHSSCCTTCBCCBBSSCBCTTSCHHHHHH
T ss_pred             CeEEEEEEeCC-CCccCEEEeccccCCcccccccCCCCEEEEEECCCChHHHcCCCccceeeeeeCCcccCCCCHHHHHH
Confidence            45689999986 3789999998876432      2468999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCCcEEEEEEeCCCC
Q psy1156         649 LFKTIKNGSISLHICRRLKS  668 (671)
Q Consensus       649 lLK~sg~~~VtL~V~Rr~~~  668 (671)
                      +|++++ +.|+|+|+|+...
T Consensus        88 ~lk~~~-~~v~L~V~r~~~~  106 (111)
T d1ujua_          88 LLRSVG-DTLTVLVCDGFES  106 (111)
T ss_dssp             HHSSCS-SEEEECCCCCCCC
T ss_pred             HHHcCC-CeEEEEEEECCCC
Confidence            999885 7999999998754

>d1qava_ b.36.1.1 (A:) Syntrophin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntrophin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.63  E-value=5.6e-16  Score=133.23  Aligned_cols=86  Identities=28%  Similarity=0.415  Sum_probs=76.9

Q ss_pred             ceeeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcC
Q psy1156         575 TFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIK  654 (671)
Q Consensus       575 ~~~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg  654 (671)
                      ..++|+|.|.+ .++|||+|.++.+..   .|+||..|.|+|+|+++|.|++||+|++|||++|.+++|++|+.+|++++
T Consensus         4 q~r~V~l~k~~-~~~lG~~i~gg~~~~---~~i~V~~V~~~~~A~~~G~L~~GD~Il~INg~~v~~~~~~~~~~~l~~~~   79 (90)
T d1qava_           4 QRRRVTVRKAD-AGGLGISIKGGRENK---MPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTG   79 (90)
T ss_dssp             SCEEEEEECCT-TTCCCEEEEEEGGGT---EEEEEEEECTTSHHHHTTCCCTTEEEEEETTEECTTCCHHHHHHHHHTCC
T ss_pred             eEEEEEEEeCC-CCccCEEEEccccCC---CCEEEEEEcCCCceeeCCCCCccCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence            34689999876 368999999876543   58999999999999999999999999999999999999999999999985


Q ss_pred             CCcEEEEEEeC
Q psy1156         655 NGSISLHICRR  665 (671)
Q Consensus       655 ~~~VtL~V~Rr  665 (671)
                       +.|+|+|.|-
T Consensus        80 -~~v~l~v~~~   89 (90)
T d1qava_          80 -KEVVLEVKYM   89 (90)
T ss_dssp             -SEEEEEEEEC
T ss_pred             -CeEEEEEEEe
Confidence             7899999764

>d1rgwa_ b.36.1.1 (A:) Zasp (Cypher, Oracle 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Zasp (Cypher, Oracle 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=4.8e-16  Score=132.17  Aligned_cols=82  Identities=29%  Similarity=0.433  Sum_probs=73.0

Q ss_pred             eeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcCCC
Q psy1156         577 HTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKNG  656 (671)
Q Consensus       577 ~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg~~  656 (671)
                      ++|++.++   .+|||+|.++.+..   .|+||..|.++|||+++| |++||+|++|||++|.+++|.+|+++|++++ +
T Consensus         3 ~~V~l~~~---~~~Gf~i~gg~~~~---~~v~V~~v~~gs~A~~~~-L~~GD~Il~VNg~~v~~~s~~ev~~~i~~~~-~   74 (85)
T d1rgwa_           3 YSVTLTGP---GPWGFRLQGGKDFN---MPLTISRITPGSKAAQSQ-LSQGDLVVAIDGVNTDTMTHLEAQNKIKSAS-Y   74 (85)
T ss_dssp             EEEEECCS---SCCCEEECCCGGGT---SCCBEEEECTTSHHHHSS-CCCCSBEEEETTEECTTCCHHHHHHHHTTCS-S
T ss_pred             EEEEecCC---CCCCEEEEeecCCC---CCEEEEEecCCChHHhCC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCC-C
Confidence            57888653   78999999987654   579999999999999877 9999999999999999999999999999985 7


Q ss_pred             cEEEEEEeCC
Q psy1156         657 SISLHICRRL  666 (671)
Q Consensus       657 ~VtL~V~Rr~  666 (671)
                      .|.|+|.|..
T Consensus        75 ~v~L~V~R~~   84 (85)
T d1rgwa_          75 NLSLTLQKSK   84 (85)
T ss_dssp             CEEEEEESCC
T ss_pred             EEEEEEEECC
Confidence            8999998865

>d1tp5a1 b.36.1.1 (A:302-403) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synaptic protein PSD-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.63  E-value=6.4e-16  Score=135.89  Aligned_cols=85  Identities=36%  Similarity=0.602  Sum_probs=77.2

Q ss_pred             ceeeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcC
Q psy1156         575 TFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIK  654 (671)
Q Consensus       575 ~~~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg  654 (671)
                      ..+.|+|.|..  .+|||+|.++.+.    .|+||..|.++|+|+++|+|++||+|++|||++|.+++|++|+++|++++
T Consensus         9 ~~r~V~l~k~~--~glG~~i~~~~~~----~gv~V~~v~~gs~A~~~G~l~~GD~Il~INg~~v~~~~~~ev~~~l~~~~   82 (102)
T d1tp5a1           9 EPRRIVIHRGS--TGLGFNIVGGEDG----EGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAG   82 (102)
T ss_dssp             SCEEEEEECTT--SCCCEEEEECGGG----CCEEEEEECTTSHHHHHSCCCTTEEEEEETTEECTTCCHHHHHHHHHTSC
T ss_pred             CCEEEEEEeCC--CcccEEEEeccCC----CCEEEEEecCCchHHHcCCCcccCEEEEECCeEcCCCCHHHHHHHHHcCC
Confidence            34689999975  7899999988664    38999999999999999999999999999999999999999999999885


Q ss_pred             CCcEEEEEEeCC
Q psy1156         655 NGSISLHICRRL  666 (671)
Q Consensus       655 ~~~VtL~V~Rr~  666 (671)
                       ..|+|+|.|+.
T Consensus        83 -~~v~L~v~~~~   93 (102)
T d1tp5a1          83 -QTVTIIAQYKP   93 (102)
T ss_dssp             -SEEEEEEEECH
T ss_pred             -CeEEEEEEECC
Confidence             88999998875

>d1p1da2 b.36.1.1 (A:115-213) Glutamate receptor interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.63  E-value=7.7e-16  Score=134.34  Aligned_cols=88  Identities=20%  Similarity=0.275  Sum_probs=77.7

Q ss_pred             ceeeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcC
Q psy1156         575 TFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIK  654 (671)
Q Consensus       575 ~~~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg  654 (671)
                      ..+.|+|.|.. ..+|||.+.++.+... ..|+||+.|.|+|+|+++|+|++||+||+|||++|.+++|.+|+++|++++
T Consensus        10 ~~~~V~l~k~~-~~~lG~~v~~~~~~~~-~~~i~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~e~~~ll~~~~   87 (99)
T d1p1da2          10 GTFHVKLPKKH-SVELGITISSPSSRKP-GDPLVISDIKKGSVAHRTGTLELGDKLLAIDNIRLDSCSMEDAVQILQQCE   87 (99)
T ss_dssp             SCEEEEECCCS-SCCCCCEEECSCSSST-TCCCEEEECCSSSHHHHTSCCCTTCEEEEETTEEGGGCCHHHHHHHHHHCT
T ss_pred             CcEEEEEEECC-CCccCEEEEecCCCCC-CCCEEEEEEcCCchhhhcCCCCCCCEEEeeCCEECCCCCHHHHHHHHHcCC
Confidence            45688998875 4789999998766443 248999999999999999999999999999999999999999999999985


Q ss_pred             CCcEEEEEEeC
Q psy1156         655 NGSISLHICRR  665 (671)
Q Consensus       655 ~~~VtL~V~Rr  665 (671)
                       +.|+|+|+|+
T Consensus        88 -~~v~L~V~r~   97 (99)
T d1p1da2          88 -DLVKLKIRKD   97 (99)
T ss_dssp             -TCEEEEEECC
T ss_pred             -CeEEEEEEeC
Confidence             7899999875

>d1x5qa1 b.36.1.1 (A:8-104) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=1.5e-15  Score=131.97  Aligned_cols=87  Identities=30%  Similarity=0.542  Sum_probs=77.2

Q ss_pred             ceeeEEEeeCCCCCcccEEEecCCCCCC---CCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHH
Q psy1156         575 TFHTIVFEKGPGKKGLGFTIVGGKDSPR---GAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFK  651 (671)
Q Consensus       575 ~~~~V~L~K~~g~~~LGfsL~Gg~ds~~---g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK  651 (671)
                      ...+|+|.|..  .+|||+|.++.....   ...||||++|.++|||+++| |++||+|++|||++|.+++|.+|+.+|+
T Consensus         8 ~~~~v~l~k~~--~glG~~i~gg~~~~~~~~~~~~i~V~~V~~gg~A~~~G-L~~GD~Il~VNg~~v~~~~~~~~~~~l~   84 (97)
T d1x5qa1           8 EELTLTILRQT--GGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAG-VRVGDKLLEVNGVALQGAEHHEAVEALR   84 (97)
T ss_dssp             EEEEEEEECSS--SSCSEEEEECTTSCCSSTTCCSEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHH
T ss_pred             eEEEEEEEeCC--CeeCEEEEeccCCCCccCCCCCEEEEEECCCChhHhhc-ccCCCEEEEECCEECCCCCHHHHHHHHh
Confidence            45688898876  789999998875432   35689999999999999999 9999999999999999999999999999


Q ss_pred             hcCCCcEEEEEEeC
Q psy1156         652 TIKNGSISLHICRR  665 (671)
Q Consensus       652 ~sg~~~VtL~V~Rr  665 (671)
                      +++ ..|.|+|.|+
T Consensus        85 ~~~-~~v~l~v~R~   97 (97)
T d1x5qa1          85 GAG-TAVQMRVWRE   97 (97)
T ss_dssp             SCC-SEEEEEEEEC
T ss_pred             CCC-CEEEEEEEEC
Confidence            975 7999999985

>d1g9oa_ b.36.1.1 (A:) Na+/H+ exchanger regulatory factor, NHERF {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Na+/H+ exchanger regulatory factor, NHERF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=1.2e-15  Score=131.47  Aligned_cols=85  Identities=26%  Similarity=0.488  Sum_probs=75.9

Q ss_pred             eeeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcCC
Q psy1156         576 FHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKN  655 (671)
Q Consensus       576 ~~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg~  655 (671)
                      .+.|+|.|..  .+|||+|.++...    .|+||..|.++|||+++| |++||+|++|||++|.+++|++|+++|++.+ 
T Consensus         4 Pr~v~l~k~~--~g~Gf~i~~~~~~----~~~~V~~V~~g~~A~~aG-l~~GD~Il~VNg~~v~~~t~~e~~~ll~~~~-   75 (91)
T d1g9oa_           4 PRLCCLEKGP--NGYGFHLHGEKGK----LGQYIRLVEPGSPAEKAG-LLAGDRLVEVNGENVEKETHQQVVSRIRAAL-   75 (91)
T ss_dssp             CEEEEEECBT--TBCCEEEEECTTC----SSEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHHTCS-
T ss_pred             CEEEEEEECC--CeeeEEEEecCCC----CCEEEEEEcCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCC-
Confidence            3689999986  6899999987553    489999999999999999 9999999999999999999999999999885 


Q ss_pred             CcEEEEEEeCCCC
Q psy1156         656 GSISLHICRRLKS  668 (671)
Q Consensus       656 ~~VtL~V~Rr~~~  668 (671)
                      +.|+|+|.++...
T Consensus        76 ~~v~L~v~~~~~~   88 (91)
T d1g9oa_          76 NAVRLLVVDPETD   88 (91)
T ss_dssp             SEEEEEEECCCCS
T ss_pred             CeEEEEEECCCCC
Confidence            8999999876543

>d2fe5a1 b.36.1.1 (A:223-314) Synapse-associated protein 102 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synapse-associated protein 102
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=1.6e-15  Score=130.64  Aligned_cols=89  Identities=21%  Similarity=0.330  Sum_probs=79.0

Q ss_pred             eEEEEEEeCCCCCcccEEEeeecCCCCC-CcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhcC
Q psy1156         388 QTMVRVNRRDFNEELGIYIAKIKNSSEG-NIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSG  466 (671)
Q Consensus       388 ~~~V~L~k~~~~~~LGfsI~gg~~~~~g-~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~~  466 (671)
                      ++.|+|.|..  .+|||+|.++.+.... ...|+||..|.+||||+++|+|++||+|++|||+++.+++|++++.+|+.+
T Consensus         2 v~~V~L~k~~--~glG~~i~gg~~~~~~~~~~gi~I~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~e~~~~lk~~   79 (92)
T d2fe5a1           2 IMEVNLLKGP--KGLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNT   79 (92)
T ss_dssp             EEEEEEECCT--TCSCEEEEECBTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCBHHHHHHHHHTC
T ss_pred             EEEEEEEECC--CccCEEEEeecCCccCCCCCCEEEEEECCCCChhhcCCCCCCCEEEEeCCeecCCCCHHHHHHHHHcC
Confidence            5789999854  6899999988754422 137899999999999999999999999999999999999999999999999


Q ss_pred             CCeEEEEEEeCC
Q psy1156         467 PLNMDLLISRTS  478 (671)
Q Consensus       467 g~~V~L~V~R~~  478 (671)
                      +..|+|+|.|++
T Consensus        80 ~~~v~L~v~Rpg   91 (92)
T d2fe5a1          80 SDMVYLKVAKPG   91 (92)
T ss_dssp             CSEEEEEEECCC
T ss_pred             CCEEEEEEECCC
Confidence            999999999875

>d1uepa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=1e-15  Score=134.56  Aligned_cols=89  Identities=30%  Similarity=0.536  Sum_probs=77.2

Q ss_pred             ceeeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcC
Q psy1156         575 TFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIK  654 (671)
Q Consensus       575 ~~~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg  654 (671)
                      ...+|+|.|..  .+|||+|.++.+..   .++||..|.++|+|+++|+|++||+||+|||++|.+++|++|+++|++++
T Consensus         9 ~~~~V~l~k~~--~glG~~i~gg~~~~---~~i~V~~v~~g~~A~~~G~L~~GD~Il~VNg~~v~~~t~~e~~~~l~~~~   83 (103)
T d1uepa_           9 KELDVHLRRME--SGFGFRILGGDEPG---QPILIGAVIAMGSADRDGRLHPGDELVYVDGIPVAGKTHRYVIDLMHHAA   83 (103)
T ss_dssp             EEECCEEESSS--SSCCEEECCCCSTT---SCCBEEEECTTSTTGGGTCCCTTCEEEEETTEECTTSCHHHHHHHHHHHH
T ss_pred             EEEEEEEEeCC--ceEeEEEEecccCC---CcEEEEEECCCChHHHcCCCCcCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence            34568888875  78999999886643   57999999999999999999999999999999999999999999999874


Q ss_pred             -CCcEEEEEEeCCCC
Q psy1156         655 -NGSISLHICRRLKS  668 (671)
Q Consensus       655 -~~~VtL~V~Rr~~~  668 (671)
                       ...|.|+|.|+..+
T Consensus        84 ~~~~v~l~v~r~~~s   98 (103)
T d1uepa_          84 RNGQVNLTVRRKVLS   98 (103)
T ss_dssp             HHTEEEEEEEEECCC
T ss_pred             CCCEEEEEEEeCCCC
Confidence             24699999998764

>d1wi2a_ b.36.1.1 (A:) PDZ domain containing protein 11, Pdzk11 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: PDZ domain containing protein 11, Pdzk11
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.61  E-value=3.9e-15  Score=131.06  Aligned_cols=85  Identities=35%  Similarity=0.609  Sum_probs=75.1

Q ss_pred             ceeeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcC
Q psy1156         575 TFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIK  654 (671)
Q Consensus       575 ~~~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg  654 (671)
                      ..+.|+|.|.+ ..+|||.|.++.+..   .||||..|.++|||+++| |++||+||+|||++|.+++|++|+++|+.++
T Consensus        15 ~pr~V~l~r~~-~~~lGf~i~gg~~~~---~gi~V~~V~~~s~A~~~G-L~~GD~Il~VNg~~v~~~~~~ev~~llk~~~   89 (104)
T d1wi2a_          15 LPRIVTLKKPP-GAQLGFNIRGGKASQ---LGIFISKVIPDSDAHRAG-LQEGDQVLAVNDVDFQDIEHSKAVEILKTAR   89 (104)
T ss_dssp             CCEEEEECCCT-TCCCSEEEECCSSSC---CCCEEEEECTTSHHHHHT-CCTTCEEEEETTEECSSCCHHHHHHHHHHSS
T ss_pred             cCEEEEEEeCC-CCCcceEEEccccCC---CCEEEEEECCCChhHhcc-cccCCEEEEECCEECCCCCHHHHHHHHhcCC
Confidence            34689999986 478999999987643   589999999999999999 9999999999999999999999999999863


Q ss_pred             CCcEEEEEEeCC
Q psy1156         655 NGSISLHICRRL  666 (671)
Q Consensus       655 ~~~VtL~V~Rr~  666 (671)
                        .|+|+|.|..
T Consensus        90 --~v~l~V~~~~   99 (104)
T d1wi2a_          90 --EISMRVRFFS   99 (104)
T ss_dssp             --SEEEEEECCC
T ss_pred             --eEEEEEEECC
Confidence              7999996654

>d1rgra_ b.36.1.1 (A:) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synaptic protein PSD-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.61  E-value=1.6e-15  Score=130.71  Aligned_cols=90  Identities=22%  Similarity=0.329  Sum_probs=79.1

Q ss_pred             CeEEEEEEeCCCCCcccEEEeeecCCCCC-CcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhc
Q psy1156         387 GQTMVRVNRRDFNEELGIYIAKIKNSSEG-NIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISS  465 (671)
Q Consensus       387 ~~~~V~L~k~~~~~~LGfsI~gg~~~~~g-~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~  465 (671)
                      ++..|+|.|..  .+|||+|.||.+.... ...|+||..|.+||||+++|+|++||+|++|||+++.+++|.+++.+|+.
T Consensus         1 E~~~V~l~k~~--~glG~~i~gg~~~~~~~~~~gi~I~~V~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~   78 (93)
T d1rgra_           1 EYEEITLERGN--SGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKE   78 (93)
T ss_dssp             CEEEEEEECCS--SCCSEEECCCSSSCSCTTCCCCCEEEECTTSHHHHHCCCCTTCEEEEETTEECSSSCHHHHHHHHHH
T ss_pred             CCEEEEEEeCC--CcCCEEEEeecCCCCcCCCCCEEEEEECCCChHHhcCCCCcCcEEEEECCEECCCCCHHHHHHHHHc
Confidence            35789998854  6899999988765432 23789999999999999999999999999999999999999999999998


Q ss_pred             CCCeEEEEEEeCC
Q psy1156         466 GPLNMDLLISRTS  478 (671)
Q Consensus       466 ~g~~V~L~V~R~~  478 (671)
                      ++..|.|+|.|..
T Consensus        79 ~~~~v~L~v~R~~   91 (93)
T d1rgra_          79 AGSIVRLYVMRRK   91 (93)
T ss_dssp             TTTEEEEEEECSC
T ss_pred             CCCEEEEEEEeCC
Confidence            9999999999854

>d1ueqa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=5e-15  Score=134.27  Aligned_cols=89  Identities=34%  Similarity=0.616  Sum_probs=78.2

Q ss_pred             cceeeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhc
Q psy1156         574 CTFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTI  653 (671)
Q Consensus       574 ~~~~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~s  653 (671)
                      .....|+|.|..  .+|||.|.++.+..   .++||++|.++|+|+++|+|++||+|++|||++|.+++|.+|+++|+.+
T Consensus        18 ~~~~~v~l~k~~--~glG~~i~gg~~~~---~~i~I~~v~~gg~A~~~g~L~~GD~Il~INg~~v~~~t~~eav~~l~~~   92 (123)
T d1ueqa_          18 GTFLSTTLKKSN--MGFGFTIIGGDEPD---EFLQVKSVIPDGPAAQDGKMETGDVIVYINEVCVLGHTHADVVKLFQSV   92 (123)
T ss_dssp             SEEEEEEEECCT--TSCSEEEECCSSSS---CCCEEEEECTTSHHHHTSCCCTTCEEEEETTEECTTSCHHHHHHHHHTS
T ss_pred             CeEEEEEEEECC--CeeCEEEEeecCCC---CCEEEEEECCCCHHHHcCCCeeCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence            356688888875  78999999987643   5899999999999999999999999999999999999999999999998


Q ss_pred             CC-CcEEEEEEeCCC
Q psy1156         654 KN-GSISLHICRRLK  667 (671)
Q Consensus       654 g~-~~VtL~V~Rr~~  667 (671)
                      +. ..|.|+|.|..+
T Consensus        93 ~~g~~v~L~v~R~~~  107 (123)
T d1ueqa_          93 PIGQSVNLVLCRGYP  107 (123)
T ss_dssp             CTTCEEEEEEEESCC
T ss_pred             CCCCEEEEEEEcCCC
Confidence            53 569999999654

>d1t2ma1 b.36.1.1 (A:2-93) Afadin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Afadin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=2.6e-15  Score=129.33  Aligned_cols=89  Identities=25%  Similarity=0.473  Sum_probs=78.5

Q ss_pred             CCeEEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhc
Q psy1156         386 EGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISS  465 (671)
Q Consensus       386 ~~~~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~  465 (671)
                      .++++|++.+.   .+|||+|.++.+...+. .|+||..|.+||||+++|+|++||+|++|||+++.+++|++++.+|++
T Consensus         3 pei~~v~l~~~---~glG~~i~g~~~~~~~~-~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~ea~~~l~~   78 (92)
T d1t2ma1           3 PEIITVTLKKQ---NGMGLSIVAAKGAGQDK-LGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAELMTR   78 (92)
T ss_dssp             CEEEEEEEECS---SSCCEEEEEECCSSCCS-CEEEEEEECTTSHHHHHTCCCSSEEEEEETTEECTTCCHHHHHHHHHS
T ss_pred             CeEEEEEEeCC---CccCEEEEeecCCCCCC-CCEEEEEEcCCChHHhcCCCCcccEeeeeCCeecCCCCHHHHHHHHHc
Confidence            35667777653   57999999987655444 789999999999999999999999999999999999999999999999


Q ss_pred             CCCeEEEEEEeCC
Q psy1156         466 GPLNMDLLISRTS  478 (671)
Q Consensus       466 ~g~~V~L~V~R~~  478 (671)
                      ++..|+|+|.|.+
T Consensus        79 ~~~~v~L~v~R~g   91 (92)
T d1t2ma1          79 TSSVVTLEVAKQG   91 (92)
T ss_dssp             CCSEEEEEEEECC
T ss_pred             CCCeEEEEEEeCC
Confidence            9999999999865

>d1x6da1 b.36.1.2 (A:8-114) Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Interleukin 16
domain: Interleukin 16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=2.3e-15  Score=133.04  Aligned_cols=89  Identities=28%  Similarity=0.591  Sum_probs=73.8

Q ss_pred             ceeeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcC
Q psy1156         575 TFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIK  654 (671)
Q Consensus       575 ~~~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg  654 (671)
                      ..+.|.|.|.. .++|||+|.|+.+..  ..|+||.+|.++|+|+++|+|++||+|++|||++|.+++|++|+++|++++
T Consensus         8 ~~~~v~l~k~~-~~~lG~~i~gg~~~~--~~~i~V~~v~~gs~A~~~g~L~~GD~Il~VNg~~v~~~~~~ea~~~l~~~~   84 (107)
T d1x6da1           8 GIHVTILHKEE-GAGLGFSLAGGADLE--NKVITVHRVFPNGLASQEGTIQKGNEVLSINGKSLKGTTHHDALAILRQAR   84 (107)
T ss_dssp             TEEEEEEECCT-TSCCSEEEECCSSSS--CSSCEEEEECSSSHHHHHTSSCTTCBCCEETTEECSSCCHHHHHHHHHHTT
T ss_pred             CcEEEEEEcCC-CCccCEEEeeccCCC--CCCEEEEEECCCCHHHHcCCCCcCCEEEEECCEecCCCCHHHHHHHHHcCC
Confidence            45678888875 478999999987643  358999999999999999999999999999999999999999999999986


Q ss_pred             CCcEEEEEEeCC
Q psy1156         655 NGSISLHICRRL  666 (671)
Q Consensus       655 ~~~VtL~V~Rr~  666 (671)
                      ...+.+++.|+.
T Consensus        85 ~~~~l~v~~r~~   96 (107)
T d1x6da1          85 EPRQAVIVTRKL   96 (107)
T ss_dssp             SSSEEEEEEECC
T ss_pred             CCEEEEEEECCC
Confidence            333444444433

>d1q3oa_ b.36.1.1 (A:) Shank1, PDZ domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Shank1, PDZ domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.59  E-value=4.1e-15  Score=130.43  Aligned_cols=91  Identities=20%  Similarity=0.378  Sum_probs=78.8

Q ss_pred             ceeeEEEeeCCCCCcccEEEecCCCCCC---------CCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHH
Q psy1156         575 TFHTIVFEKGPGKKGLGFTIVGGKDSPR---------GAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLE  645 (671)
Q Consensus       575 ~~~~V~L~K~~g~~~LGfsL~Gg~ds~~---------g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheE  645 (671)
                      +.++|.|.|.. ..+|||.|.++...+.         ...++||..|.++|||+++| |++||+|++|||++|.+++|.+
T Consensus         5 ~~~tV~l~r~~-~~~fGf~l~g~~~~~~~~~~~~~~~~~~~~~I~~v~~g~~A~~aG-L~~GD~Il~INg~~v~~~~h~e   82 (104)
T d1q3oa_           5 KEKTVLLQKKD-SEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAG-LRMGDFLIEVNGQNVVKVGHRQ   82 (104)
T ss_dssp             EEEEEEEECCT-TSCCSEEEEESSCCCTTSCCCCCSSCCSSEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHH
T ss_pred             ceEEEEEEECC-CCccCEEEEeecccCccccccccccCCCCEEEEEECCCCHHHHcC-CCCCCEEEEEcCeEcCCCCHHH
Confidence            45689998875 4799999998865431         24579999999999999999 9999999999999999999999


Q ss_pred             HHHHHHhcCCCcEEEEEEeCCCC
Q psy1156         646 AISLFKTIKNGSISLHICRRLKS  668 (671)
Q Consensus       646 AV~lLK~sg~~~VtL~V~Rr~~~  668 (671)
                      ++++|++++ ..|+|+|.+...|
T Consensus        83 vv~~ik~~~-~~v~L~V~~~~~~  104 (104)
T d1q3oa_          83 VVNMIRQGG-NTLMVKVVMVTRH  104 (104)
T ss_dssp             HHHHHHHTT-TEEEEEEEEEECC
T ss_pred             HHHHHHcCC-CeEEEEEEecCCC
Confidence            999999985 8899999987653

>d1wi4a1 b.36.1.1 (A:8-103) Syntaxin binding protein 4 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntaxin binding protein 4
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.59  E-value=3.4e-15  Score=129.68  Aligned_cols=86  Identities=30%  Similarity=0.554  Sum_probs=73.6

Q ss_pred             ceeeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcC
Q psy1156         575 TFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIK  654 (671)
Q Consensus       575 ~~~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg  654 (671)
                      ..+.|++.+.   .+|||+|.|+.+...+ .||||+.|.++|+|+++|+|++||+|++|||++|.+++|++|+++|+++.
T Consensus         8 ~~~~v~~~~~---~glG~~i~gg~~~~~~-~~i~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~ea~~~l~~~~   83 (96)
T d1wi4a1           8 AFRVITVTKE---TGLGLKILGGINRNEG-PLVYIHEVIPGGDCYKDGRLKPGDQLVSINKESMIGVSFEEAKSIITRAK   83 (96)
T ss_dssp             TEEEEEECCS---SCCCEEEEECSSSSSC-SSEEEEEECTTSHHHHHCSCCTTCBEEEETTSCCTTCCHHHHHHHHHHSC
T ss_pred             cEEEEEecCC---CccCEEEEeccCCCCC-CCEEEEEEeCCCccccCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhcc
Confidence            4556677664   5799999998775433 48999999999999999999999999999999999999999999999873


Q ss_pred             ---CCcEEEEEEe
Q psy1156         655 ---NGSISLHICR  664 (671)
Q Consensus       655 ---~~~VtL~V~R  664 (671)
                         ...+.|.+.|
T Consensus        84 ~~~~~~vel~~~R   96 (96)
T d1wi4a1          84 LRSESPWEIAFIR   96 (96)
T ss_dssp             CSSSSCEEEEEEC
T ss_pred             CCCCCeEEEEEEC
Confidence               3569998876

>d1um1a_ b.36.1.1 (A:) Hypothetical protein KIAA1849 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1849
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=4.8e-15  Score=131.52  Aligned_cols=92  Identities=27%  Similarity=0.447  Sum_probs=82.4

Q ss_pred             CCCeEEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHh
Q psy1156         385 QEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIIS  464 (671)
Q Consensus       385 ~~~~~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~  464 (671)
                      ...+++|+|.|..  .+|||+|.++.+...+. .++||..|.++|||+++|+|++||+|++|||+++.+++|++|+.+|+
T Consensus         6 ~g~~~~V~l~k~~--~glG~~i~~~~~~~~~~-~~i~V~~v~~gg~A~~~G~L~~GD~Il~INg~~v~~~~~~ev~~llk   82 (110)
T d1um1a_           6 SGYVFTVELERGP--SGLGMGLIDGMHTHLGA-PGLYIQTLLPGSPAAADGRLSLGDRILEVNGSSLLGLGYLRAVDLIR   82 (110)
T ss_dssp             CCCEEEEEEECCT--TCCCEEEEETTTSTTCC-SSEEEEEECTTSHHHHHSCCCTTCEEEEESSCBCSSCCHHHHHHHHH
T ss_pred             CCCEEEEEEEECC--CCCCEEEEeecCCCCCC-CCEEEEEECCCCHHHHcCCCccCCEEEEECCEECCCCCHHHHHHHHH
Confidence            4568999999864  68999999987655444 78999999999999999999999999999999999999999999999


Q ss_pred             cCCCeEEEEEEeCCc
Q psy1156         465 SGPLNMDLLISRTSL  479 (671)
Q Consensus       465 ~~g~~V~L~V~R~~~  479 (671)
                      +++..|.|+|.|...
T Consensus        83 ~~~~~v~l~v~r~~~   97 (110)
T d1um1a_          83 HGGKKMRFLVAKSDV   97 (110)
T ss_dssp             TCCSEEEEEEECCCH
T ss_pred             cCCCeEEEEEEeCCC
Confidence            999999999988643

>d1qaua_ b.36.1.1 (A:) Neuronal nitric oxide synthase, NNOS {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Neuronal nitric oxide synthase, NNOS
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.59  E-value=5.7e-15  Score=130.92  Aligned_cols=86  Identities=24%  Similarity=0.357  Sum_probs=72.7

Q ss_pred             eeeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcCC
Q psy1156         576 FHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKN  655 (671)
Q Consensus       576 ~~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg~  655 (671)
                      ..+|.|.|.. .++|||+|.++.+.    .||||.+|.++|||+++|+|++||+|++|||++|.+++|++|+++|+.++.
T Consensus         2 i~~V~l~k~~-~~glG~~i~~~~~~----~~i~I~~v~~ggpA~~~G~L~~GD~Il~INg~~v~~~s~~e~~~~l~~~~~   76 (112)
T d1qaua_           2 VISVRLFKRK-VGGLGFLVKERVSK----PPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIAS   76 (112)
T ss_dssp             EEEEEEECBT-TTBTSEEEEECSSS----SCEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTSCHHHHHHHHHHSCS
T ss_pred             eEEEEEEECC-CCcEeEEEEeecCC----CCEEEEEEcCCCHHHHhhhcccccEeEEECCcCccCCCHHHHHHHHHcCCC
Confidence            3578998876 47899999988664    489999999999999999999999999999999999999999999999864


Q ss_pred             CcEEEEEEeCC
Q psy1156         656 GSISLHICRRL  666 (671)
Q Consensus       656 ~~VtL~V~Rr~  666 (671)
                      ....+++.|+.
T Consensus        77 ~~~~~l~~~~~   87 (112)
T d1qaua_          77 ETHVVLILRGP   87 (112)
T ss_dssp             SSEEEEEEECC
T ss_pred             CcEEEEEEeCC
Confidence            44444444444

>d1uewa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=3.7e-15  Score=132.87  Aligned_cols=91  Identities=29%  Similarity=0.461  Sum_probs=79.8

Q ss_pred             ceeeEEEeeCCCCCcccEEEecCCCCCC----CCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHH
Q psy1156         575 TFHTIVFEKGPGKKGLGFTIVGGKDSPR----GAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLF  650 (671)
Q Consensus       575 ~~~~V~L~K~~g~~~LGfsL~Gg~ds~~----g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lL  650 (671)
                      ....|.|.|.+ ..+|||+|.++.+...    ...|+||..|.++|+|+++|.|++||+|++|||++|.+++|++|+++|
T Consensus        10 ~~~~V~l~r~~-~~~lGf~l~~g~~~~~~~~~~~~~~~I~~I~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~ev~~ll   88 (114)
T d1uewa_          10 QTSDVVIHRKE-NEGFGFVIISSLNRPESGSTITVPHKIGRIIDGSPADRCAKLKVGDRILAVNGQSIINMPHADIVKLI   88 (114)
T ss_dssp             CCEEEEEECCT-TSCCCEEEECCCCSCCSSCCSCCSCEEEEECTTCTTGGGSSCCTTCBEEEETTBCTTTSCHHHHHHHH
T ss_pred             eeEEEEEEeCC-CCCCCEEEeeecccCCCCccCcCCEEEEEECCCCHHHhhccCCcCcEEeEeCCcccCCCcHHHHHHHH
Confidence            45689999876 4789999999876543    245799999999999999999999999999999999999999999999


Q ss_pred             HhcCCCcEEEEEEeCCC
Q psy1156         651 KTIKNGSISLHICRRLK  667 (671)
Q Consensus       651 K~sg~~~VtL~V~Rr~~  667 (671)
                      ++++ ..|+|+|.|...
T Consensus        89 ~~~~-~~v~l~V~r~~~  104 (114)
T d1uewa_          89 KDAG-LSVTLRIIPQEE  104 (114)
T ss_dssp             HHTT-TEEEEEECCCSC
T ss_pred             HcCC-CeEEEEEEeCCC
Confidence            9885 789999988764

>d2cssa1 b.36.1.1 (A:8-115) Regulating synaptic membrane exocytosis protein 1, RIMS1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Regulating synaptic membrane exocytosis protein 1, RIMS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=1.2e-15  Score=135.29  Aligned_cols=79  Identities=29%  Similarity=0.456  Sum_probs=71.9

Q ss_pred             CCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcC-CCcEEEEEEeC
Q psy1156         587 KKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIK-NGSISLHICRR  665 (671)
Q Consensus       587 ~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg-~~~VtL~V~Rr  665 (671)
                      ..+|||+|.||.+.+.+..|+||..|.++|+|+++|.|++||+||+|||++|.+++|++|+++|++++ ...|+|+|.|+
T Consensus        29 ~~~lG~~i~gg~~~~~~~~gi~V~~v~~gg~A~~~g~L~~GD~Il~VNg~~~~~~t~~ea~~~l~~~~~~~~v~l~v~RP  108 (108)
T d2cssa1          29 GALLGLKVVGGKMTDLGRLGAFITKVKKGSLADVVGHLRAGDEVLEWNGKPLPGATNEEVYNIILESKSEPQVEIIVSRP  108 (108)
T ss_dssp             SSCSSEEEEEEEECTTSSEEEEEEEECTTSHHHHTSCCCTTCEEEEESSCBCTTSCHHHHHHHHHHGGGCSCEEEEEEEC
T ss_pred             CCCcCEEEeccCCCCCCCcCEEEEEECCCCchhhcCCCCcCCEEEEECCEECCCCCHHHHHHHHHhCCCCCEEEEEEeCc
Confidence            47899999999887767779999999999999999999999999999999999999999999999764 35799999884

>d1ozia_ b.36.1.1 (A:) Phosphatase hPTP1e {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Phosphatase hPTP1e
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.58  E-value=7.3e-15  Score=127.75  Aligned_cols=90  Identities=29%  Similarity=0.441  Sum_probs=77.9

Q ss_pred             CCeEEEEEEeCCCCCcccEEEeeecCC-----CCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHH
Q psy1156         386 EGQTMVRVNRRDFNEELGIYIAKIKNS-----SEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAK  460 (671)
Q Consensus       386 ~~~~~V~L~k~~~~~~LGfsI~gg~~~-----~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av  460 (671)
                      .+.+.|+|.|..  ++|||+|.++...     ... ..++||..|.+||||+++|+|++||+|++|||++|.+++|++|+
T Consensus         3 g~~~~V~L~k~~--~~lG~~i~~~~~~~g~~~~~~-~~~i~V~~V~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~~a~   79 (99)
T d1ozia_           3 GDTFEVELAKTD--GSLGISVTVLFDKGGVNTSVR-HGGIYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEGATHKQAV   79 (99)
T ss_dssp             TCEEEEEEECCS--SSCSEEEESCCSSSCSSCSSS-CCCEEEEEECSSSHHHHHTCCCTTCEEEEETTEECSSCCHHHHH
T ss_pred             CCEEEEEEEECC--CCCcEEEEeeccCCCcccccC-CCCEEEEEECCCChHHhcCCCCccCEEEEECCEEcCCCCHHHHH
Confidence            367899999854  6899999864432     112 26899999999999999999999999999999999999999999


Q ss_pred             HHHhcCCCeEEEEEEeCC
Q psy1156         461 SIISSGPLNMDLLISRTS  478 (671)
Q Consensus       461 ~~L~~~g~~V~L~V~R~~  478 (671)
                      .+|++++..|+|+|.|..
T Consensus        80 ~~lk~~~~~v~L~v~R~~   97 (99)
T d1ozia_          80 ETLRNTGQVVHLLLEKGQ   97 (99)
T ss_dssp             HHHHHSCSEEEEEEECCC
T ss_pred             HHHHCCCCeEEEEEEeCC
Confidence            999999999999998854

>d1qava_ b.36.1.1 (A:) Syntrophin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntrophin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.57  E-value=5.8e-15  Score=126.82  Aligned_cols=86  Identities=24%  Similarity=0.287  Sum_probs=78.2

Q ss_pred             CeEEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhcC
Q psy1156         387 GQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSG  466 (671)
Q Consensus       387 ~~~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~~  466 (671)
                      ..++|+|.|. +.++|||+|.+|.+..    .|+||..|.|+|||+++|.|++||+|++|||+++.+++|++++.+|+.+
T Consensus         4 q~r~V~l~k~-~~~~lG~~i~gg~~~~----~~i~V~~V~~~~~A~~~G~L~~GD~Il~INg~~v~~~~~~~~~~~l~~~   78 (90)
T d1qava_           4 QRRRVTVRKA-DAGGLGISIKGGRENK----MPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKT   78 (90)
T ss_dssp             SCEEEEEECC-TTTCCCEEEEEEGGGT----EEEEEEEECTTSHHHHTTCCCTTEEEEEETTEECTTCCHHHHHHHHHTC
T ss_pred             eEEEEEEEeC-CCCccCEEEEccccCC----CCEEEEEEcCCCceeeCCCCCccCEEEEECCEECCCCCHHHHHHHHHhC
Confidence            4578999885 4679999999887654    7899999999999999999999999999999999999999999999999


Q ss_pred             CCeEEEEEEeC
Q psy1156         467 PLNMDLLISRT  477 (671)
Q Consensus       467 g~~V~L~V~R~  477 (671)
                      +..|+|+|.|.
T Consensus        79 ~~~v~l~v~~~   89 (90)
T d1qava_          79 GKEVVLEVKYM   89 (90)
T ss_dssp             CSEEEEEEEEC
T ss_pred             CCeEEEEEEEe
Confidence            99999999763

>d1wf8a1 b.36.1.1 (A:8-101) Neurabin-i {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Neurabin-i
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=3.7e-15  Score=128.75  Aligned_cols=90  Identities=24%  Similarity=0.433  Sum_probs=77.4

Q ss_pred             CeEEEEEEeCCCCCcccEEEeeecCCCC--CCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHh
Q psy1156         387 GQTMVRVNRRDFNEELGIYIAKIKNSSE--GNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIIS  464 (671)
Q Consensus       387 ~~~~V~L~k~~~~~~LGfsI~gg~~~~~--g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~  464 (671)
                      +++.|+|.|..  .+|||+|.|+.....  ....|+||..|.+||||+++|+|++||+|++|||+++.+++|.+++.+|+
T Consensus         2 e~~~V~L~k~~--~glG~~i~g~~~~~~~~~~~~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~~l~   79 (94)
T d1wf8a1           2 ELFPVELEKDE--DGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQNFAATVLR   79 (94)
T ss_dssp             EEEEEEEECBT--TBSCEEEEEEEESCCTTCCEEEEEEEEECTTCHHHHHCSSCTTCBEEEETTEECBSCCHHHHHHHHH
T ss_pred             eEEEEEEEeCC--CCcCEEEEeccCCCCCCcCCCCEEEEEECCCChHHHcCCCCcCCEEEEECCEECCCCCHHHHHHHHH
Confidence            46789998854  689999997543211  11268999999999999999999999999999999999999999999999


Q ss_pred             cCCCeEEEEEEeCC
Q psy1156         465 SGPLNMDLLISRTS  478 (671)
Q Consensus       465 ~~g~~V~L~V~R~~  478 (671)
                      ++++.|+|+|.|..
T Consensus        80 ~~~~~v~L~V~R~k   93 (94)
T d1wf8a1          80 NTKGNVRFVIGREK   93 (94)
T ss_dssp             HCCSEEEEEEEEEC
T ss_pred             cCCCeEEEEEEeCC
Confidence            99999999998853

>d1ihja_ b.36.1.1 (A:) Inad {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Inad
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.57  E-value=5.3e-15  Score=127.56  Aligned_cols=89  Identities=25%  Similarity=0.368  Sum_probs=77.9

Q ss_pred             CeEEEEEEeCCCCCcccEEEeeecCCCCC--CcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHh
Q psy1156         387 GQTMVRVNRRDFNEELGIYIAKIKNSSEG--NIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIIS  464 (671)
Q Consensus       387 ~~~~V~L~k~~~~~~LGfsI~gg~~~~~g--~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~  464 (671)
                      .+++|+|.|. +.++|||+|.++......  ...|+||..|.|||||+++|+|++||+|++|||+++.+++|++++.+|+
T Consensus         3 ~i~~V~L~k~-~~~~lG~~i~gg~~~~~~~~~~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~ll~   81 (94)
T d1ihja_           3 LIHMVTLDKT-GKKSFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIK   81 (94)
T ss_dssp             EEEEEEEECT-TSSSCCEEEEEEEECCSSSCCEEEEEEEEECTTSHHHHHCSCCTTCEEEEETTEECTTCCHHHHHHHHH
T ss_pred             EEEEEEEEeC-CCCCcCEEEeccccCCCCccCCCCEEEEEECCCCHHHHhCCCChhcEEEEECCEECCCCCHHHHHHHHH
Confidence            3578899874 468999999987654321  1367999999999999999999999999999999999999999999999


Q ss_pred             cCCCeEEEEEEe
Q psy1156         465 SGPLNMDLLISR  476 (671)
Q Consensus       465 ~~g~~V~L~V~R  476 (671)
                      +++..|+|+|.|
T Consensus        82 ~~~~~v~L~V~R   93 (94)
T d1ihja_          82 EADFKIELEIQT   93 (94)
T ss_dssp             HSCSEEEEEEEE
T ss_pred             cCCCEEEEEEEe
Confidence            999999999987

>d1wfva_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=1.1e-15  Score=134.64  Aligned_cols=88  Identities=35%  Similarity=0.680  Sum_probs=79.0

Q ss_pred             ceeeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcC
Q psy1156         575 TFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIK  654 (671)
Q Consensus       575 ~~~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg  654 (671)
                      +.++|.|.|+.  .+|||+|.++.+..   .|+||..|.++|+|+++|.|++||+|++|||++|.+++|.+|+++|++++
T Consensus        11 e~~~v~l~k~~--~glG~~i~gg~~~~---~~i~I~~v~~gg~A~~~g~L~~GD~Il~INg~~v~~~s~~ev~~~l~~~~   85 (103)
T d1wfva_          11 DYFTVDMEKGA--KGFGFSIRGGREYK---MDLYVLRLAEDGPAIRNGRMRVGDQIIEINGESTRDMTHARAIELIKSGG   85 (103)
T ss_dssp             CCEECCEECCT--TSSSBCCEEETTTT---EEEECCCBCTTSHHHHHCSSCTTCEEEEETTEECSSCCHHHHHHHHHHHC
T ss_pred             eEEEEEEEeCC--CccCEEEEeeccCC---CCEEEEEEcCCChHHhcCCCCCCCEEEEECCEECCCCcHHHHHHHHHcCC
Confidence            56788998875  68999999887654   58999999999999999999999999999999999999999999999985


Q ss_pred             CCcEEEEEEeCCCC
Q psy1156         655 NGSISLHICRRLKS  668 (671)
Q Consensus       655 ~~~VtL~V~Rr~~~  668 (671)
                       ..|.|+|.|....
T Consensus        86 -~~v~l~v~R~~~s   98 (103)
T d1wfva_          86 -RRVRLLLKRGTGS   98 (103)
T ss_dssp             -SEECEEEECTTCS
T ss_pred             -CEEEEEEEECCCC
Confidence             7899999887653

>d2h3la1 b.36.1.1 (A:1310-1412) Erbin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Erbin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=5.5e-15  Score=130.05  Aligned_cols=86  Identities=31%  Similarity=0.520  Sum_probs=72.0

Q ss_pred             eEEEeeCCCCCcccEEEecCCCCCC-----CCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHh
Q psy1156         578 TIVFEKGPGKKGLGFTIVGGKDSPR-----GAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKT  652 (671)
Q Consensus       578 ~V~L~K~~g~~~LGfsL~Gg~ds~~-----g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~  652 (671)
                      .|.+.+.. ..+|||+|.|+.+...     +..||||+.|.++|||++  .|++||+||+|||++|.+++|.+|+++|++
T Consensus        12 ~v~v~~~~-~~~lGf~I~Gg~~~~~~~~~~~~~gI~I~~V~~gs~A~~--~L~~GD~Il~VNg~~v~~~t~~eav~~l~~   88 (103)
T d2h3la1          12 EIRVRVEK-DPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK--LLQPGDKIIQANGYSFINIEHGQAVSLLKT   88 (103)
T ss_dssp             EEEEEEEC-SSSCSEEEEETTTTCCCSSSTTCCSEEEEEECTTSTTTT--TCCTTCEEEEETTEECSSCCHHHHHHHHHH
T ss_pred             EEEEEEcc-CCCCCEEEeeecCCCCCccccCCCCEEEEEeCCCChHHh--ccCCCCEEEEECCEECCCCCHHHHHHHHHh
Confidence            34444443 2679999999876532     346899999999999975  499999999999999999999999999999


Q ss_pred             cCCCcEEEEEEeCCC
Q psy1156         653 IKNGSISLHICRRLK  667 (671)
Q Consensus       653 sg~~~VtL~V~Rr~~  667 (671)
                      ++ +.|+|+|.|+..
T Consensus        89 ~~-~~v~L~V~R~~s  102 (103)
T d2h3la1          89 FQ-NTVELIIVREVS  102 (103)
T ss_dssp             CC-SEEEEEEEEEEC
T ss_pred             CC-CeEEEEEEEECC
Confidence            86 799999999865

>d1kwaa_ b.36.1.1 (A:) Cask/Lin-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Cask/Lin-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=6.1e-15  Score=126.02  Aligned_cols=81  Identities=25%  Similarity=0.407  Sum_probs=73.5

Q ss_pred             eeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcCCC
Q psy1156         577 HTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKNG  656 (671)
Q Consensus       577 ~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg~~  656 (671)
                      +.|.|.|.+ .++|||+|.++.+     .|+||..|.++|+|+++|+|++||+|++|||++|.+++|.+|+++|+.++ +
T Consensus         3 R~V~l~k~~-~~~lG~~l~~~~~-----~~~~I~~v~~gg~A~~~g~l~~GD~Il~INg~~v~~~~~~~~~~ll~~~~-~   75 (88)
T d1kwaa_           3 RLVQFQKNT-DEPMGITLKMNEL-----NHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMR-G   75 (88)
T ss_dssp             EEEEEEECS-SSCCCEEEECSCG-----GGEEEEEECTTSHHHHHTCCCTTCEEEEETTEEGGGSCHHHHHHHHHHCC-E
T ss_pred             EEEEEEeCC-CCCccEEEEEcCC-----CCEEEEEECCCCHHHHcCCCccCcEEEEECCEECCCCCHHHHHHHHHcCC-C
Confidence            578999987 4899999987643     48999999999999999999999999999999999999999999999985 7


Q ss_pred             cEEEEEEe
Q psy1156         657 SISLHICR  664 (671)
Q Consensus       657 ~VtL~V~R  664 (671)
                      .|+|+|..
T Consensus        76 ~v~L~i~p   83 (88)
T d1kwaa_          76 SITFKIVP   83 (88)
T ss_dssp             EEEEEEEC
T ss_pred             cEEEEEEe
Confidence            89999973

>d1m5za_ b.36.1.1 (A:) Glutamate receptor interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.57  E-value=9.4e-15  Score=125.65  Aligned_cols=86  Identities=24%  Similarity=0.296  Sum_probs=78.7

Q ss_pred             CCeEEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhc
Q psy1156         386 EGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISS  465 (671)
Q Consensus       386 ~~~~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~  465 (671)
                      .+.+.|+|.|....++|||+|.++...     .|+||..|.++|||+++| |++||+|++|||+++.++++.+++.+|+.
T Consensus         5 ~e~~~v~l~k~~~~~~~Gf~i~~~~~~-----~g~~V~~V~~~g~A~~~g-L~~GD~Il~VNg~~v~~~t~~~~~~~l~~   78 (91)
T d1m5za_           5 VELHKVTLYKDSGMEDFGFSVADGLLE-----KGVYVKNIRPAGPGDLGG-LKPYDRLLQVNHVRTRDFDCCLVVPLIAE   78 (91)
T ss_dssp             CEEEEEEEECCTTCSSSSEEEEECTTS-----SCEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHT
T ss_pred             CceEEEEEEECCCCCceeEEEeccCCC-----CCEEEEEECCCChhHhCc-CCCCCEEEEECCEECCCCCHHHHHHHHHC
Confidence            367889999966567899999987654     799999999999999999 99999999999999999999999999999


Q ss_pred             CCCeEEEEEEeC
Q psy1156         466 GPLNMDLLISRT  477 (671)
Q Consensus       466 ~g~~V~L~V~R~  477 (671)
                      ++..|+|+|.|.
T Consensus        79 ~~~~v~L~v~R~   90 (91)
T d1m5za_          79 SGNKLDLVISRN   90 (91)
T ss_dssp             STTEEEEEEEEC
T ss_pred             CCCEEEEEEEEC
Confidence            999999999985

>d2f5ya1 b.36.1.1 (A:19-95) Regulator of G-protein signaling 3, RGS3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Regulator of G-protein signaling 3, RGS3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=6.4e-15  Score=122.98  Aligned_cols=76  Identities=24%  Similarity=0.399  Sum_probs=69.3

Q ss_pred             EEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcCCCcE
Q psy1156         579 IVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKNGSI  658 (671)
Q Consensus       579 V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg~~~V  658 (671)
                      |+|.|..  .+|||++.++       .|+||.+|.++|||+++| |++||+|++|||++|.+++|.+++.+|++++ +++
T Consensus         1 v~l~r~~--~g~Gf~l~~~-------~~~~V~~V~~gspA~~aG-L~~GD~Il~Vng~~v~~~~~~~v~~~i~~~~-~~v   69 (77)
T d2f5ya1           1 ITIPRGK--DGFGFTICCD-------SPVRVQAVDSGGPAERAG-LQQLDTVLQLNERPVEHWKCVELAHEIRSCP-SEI   69 (77)
T ss_dssp             EEEECBT--TBTSEEEECS-------SSCEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHTCS-SEE
T ss_pred             CEEecCC--CcccEEEECC-------CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHCCC-CEE
Confidence            5677876  7899999864       368999999999999999 9999999999999999999999999999986 889


Q ss_pred             EEEEEeC
Q psy1156         659 SLHICRR  665 (671)
Q Consensus       659 tL~V~Rr  665 (671)
                      +|+|.|-
T Consensus        70 ~L~v~R~   76 (77)
T d2f5ya1          70 ILLVWRM   76 (77)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEEE
Confidence            9999884

>d1uita_ b.36.1.1 (A:) Discs large 5 protein KIAA0583 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Discs large 5 protein KIAA0583
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=7.7e-15  Score=131.76  Aligned_cols=86  Identities=23%  Similarity=0.331  Sum_probs=76.8

Q ss_pred             cceeeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhc
Q psy1156         574 CTFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTI  653 (671)
Q Consensus       574 ~~~~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~s  653 (671)
                      .+.+.|+|.|..  .+|||.|.++.+     .||||..|.++|+|+++| |++||+||+|||++|.+++|.+|+.+|+.+
T Consensus        18 ~~~r~v~l~k~~--~glG~~i~gg~~-----~gi~V~~V~~gs~A~~~g-L~~GD~Il~INg~~v~~~~~~~~~~~l~~~   89 (117)
T d1uita_          18 EEPRHVKVQKGS--EPLGISIVSGEK-----GGIYVSKVTVGSIAHQAG-LEYGDQLLEFNGINLRSATEQQARLIIGQQ   89 (117)
T ss_dssp             CCCEEEEEECSS--CCCCEEEEECTT-----SCEEEEEECTTSHHHHHT-CCTTCEECEETTEETTTCCHHHHHHHTTSC
T ss_pred             CCCEEEEEEeCC--CccCEEEEccCC-----CCEEEEEEecCChHHhCC-CCCCCEeeeECCcccCCCCHHHHHHHHHCC
Confidence            356789999875  789999998865     389999999999999998 999999999999999999999999999988


Q ss_pred             CCCcEEEEEEeCCCC
Q psy1156         654 KNGSISLHICRRLKS  668 (671)
Q Consensus       654 g~~~VtL~V~Rr~~~  668 (671)
                      + ..|+|+|.|+...
T Consensus        90 ~-~~v~l~v~~~p~~  103 (117)
T d1uita_          90 C-DTITILAQYNPHV  103 (117)
T ss_dssp             C-SEEEEEECCCSCC
T ss_pred             C-CeEEEEEEECCcc
Confidence            5 8899999877654

>d1uf1a_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=6.6e-15  Score=134.35  Aligned_cols=86  Identities=30%  Similarity=0.490  Sum_probs=76.2

Q ss_pred             ceeeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcC
Q psy1156         575 TFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIK  654 (671)
Q Consensus       575 ~~~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg  654 (671)
                      ..+.|+|.+.. ..+|||+|.|+.+..   .||||..|.++|+|+++| |++||+||+|||++|.+++|.+|+++|+.+ 
T Consensus        20 ~~~~v~l~~~~-~~~lGf~i~gg~~~~---~gv~V~~V~~g~~A~~~g-L~~GD~Il~INg~~v~~~s~~evv~~lr~~-   93 (128)
T d1uf1a_          20 DEKKVNLVLGD-GRSLGLTIRGGAEYG---LGIYITGVDPGSEAEGSG-LKVGDQILEVNGRSFLNILHDEAVRLLKSS-   93 (128)
T ss_dssp             SEEEEEEECCS-SCCCCEEEECCTTTT---CCCEEEEECTTCHHHHHT-CCTTCEEEEETTEECSSCCHHHHHHHHTTC-
T ss_pred             CeEEEEEEECC-CCccCEEEEeeccCC---CCEEEEEECCCChHHhcC-CCCCCEEEEECCEECCCCCHHHHHHHHhcC-
Confidence            45689999886 478999999987754   589999999999999999 999999999999999999999999999986 


Q ss_pred             CCcEEEEEEeCCC
Q psy1156         655 NGSISLHICRRLK  667 (671)
Q Consensus       655 ~~~VtL~V~Rr~~  667 (671)
                       ..|.|+|.+...
T Consensus        94 -~~v~l~v~~~~~  105 (128)
T d1uf1a_          94 -RHLILTVKDVGR  105 (128)
T ss_dssp             -SEEEEEEECCSC
T ss_pred             -CcEEEEEEECCc
Confidence             479999977643

>d2fcfa1 b.36.1.1 (A:1148-1243) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Multiple PDZ domain protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=5.4e-15  Score=128.09  Aligned_cols=88  Identities=25%  Similarity=0.364  Sum_probs=73.7

Q ss_pred             eEEEEEEeCCCCCcccEEEeeecCCCC-----CCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHH
Q psy1156         388 QTMVRVNRRDFNEELGIYIAKIKNSSE-----GNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSI  462 (671)
Q Consensus       388 ~~~V~L~k~~~~~~LGfsI~gg~~~~~-----g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~  462 (671)
                      ++.|+|.|. ++++|||+|.||.....     ....|+||..|.++|||+++|+|++||+|++|||+++.+++|++|+.+
T Consensus         2 pr~V~l~k~-~~~~lG~~i~gg~~~~~~~~~~~~~~gi~V~~v~~~s~A~~~G~L~~GD~Il~VNg~~v~~~t~~ea~~~   80 (96)
T d2fcfa1           2 PRRVELWRE-PSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEA   80 (96)
T ss_dssp             CEEEEECCC-C-CCCCEEEECCCC-------------EEEEEECSSSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHH
T ss_pred             CEEEEEEeC-CCCCCCEEEEcccCCCcccccccCCCCEEEEEECCCCHHHHcCCCcCCCEEEEECCEECCCCCHHHHHHH
Confidence            478999885 57899999998754321     113689999999999999999999999999999999999999999999


Q ss_pred             HhcCCCeEEEEEEe
Q psy1156         463 ISSGPLNMDLLISR  476 (671)
Q Consensus       463 L~~~g~~V~L~V~R  476 (671)
                      |++++..|+|+|.|
T Consensus        81 lk~~~~~v~L~V~r   94 (96)
T d2fcfa1          81 IRKAGNPVVFMVQS   94 (96)
T ss_dssp             HHTCCSSEEEEEEC
T ss_pred             HHcCCCeEEEEEEE
Confidence            99999999999976

>d1rzxa_ b.36.1.1 (A:) GTPase-binding domain of the cell polarity protein par6 (Par-6B) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: GTPase-binding domain of the cell polarity protein par6 (Par-6B)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.57  E-value=5.5e-15  Score=128.81  Aligned_cols=88  Identities=23%  Similarity=0.322  Sum_probs=76.3

Q ss_pred             eeeEEEeeCCCCCcccEEEecCCCCCC------CCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHH
Q psy1156         576 FHTIVFEKGPGKKGLGFTIVGGKDSPR------GAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISL  649 (671)
Q Consensus       576 ~~~V~L~K~~g~~~LGfsL~Gg~ds~~------g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~l  649 (671)
                      .+.|.|.|.....+|||+|.++.+...      ...||||..|.|+|+|+++|+|++||+|++|||++|.+++|++|+++
T Consensus         3 ~r~V~L~k~~~~~~lG~~i~gg~~~~~~~~~~~~~~gi~I~~v~~gg~A~~~G~l~~GD~Il~VNg~~v~~~~~~~~~~~   82 (98)
T d1rzxa_           3 HRRVRLLKHGSDKPLGFYIRDGTSVRVTASGLEKQPGIFISRLVPGGLAESTGLLAVNDEVIEVNGIEVAGKTLDQVTDM   82 (98)
T ss_dssp             CEEEEEECCCSSSCCSEEEEEEEEEECCSSSCEEEEEEEEEEECTTCHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHH
T ss_pred             cEEEEEEECCCCCcccEEEecccCCCccccCccCCCCEEEEEECCCChHHhcCcCCCCcEEeeECCEECCCCCHHHHHHH
Confidence            457889887766889999998765321      13589999999999999999999999999999999999999999999


Q ss_pred             HHhcCCCcEEEEEEe
Q psy1156         650 FKTIKNGSISLHICR  664 (671)
Q Consensus       650 LK~sg~~~VtL~V~R  664 (671)
                      |++++ +.|+|+|..
T Consensus        83 l~~~~-~~v~l~v~p   96 (98)
T d1rzxa_          83 MVANS-SNLIITVKP   96 (98)
T ss_dssp             HHHTC-TEEEEEEEC
T ss_pred             HHcCC-CeEEEEEEe
Confidence            99985 789999853

>d1w9ea1 b.36.1.1 (A:110-194) Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntenin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=9.8e-15  Score=123.79  Aligned_cols=82  Identities=26%  Similarity=0.433  Sum_probs=73.0

Q ss_pred             eeeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcCC
Q psy1156         576 FHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKN  655 (671)
Q Consensus       576 ~~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg~  655 (671)
                      .+.|.|.|.. .++|||.+.+..+      |+||.+|.++|||+++| |++||+|++|||++|.+++|++++.+|+.++.
T Consensus         3 pr~v~l~k~~-~~~lG~~l~~~~~------g~~V~~v~~gspA~~aG-L~~GD~Il~Vng~~v~~~~~~~v~~~lk~~~~   74 (85)
T d1w9ea1           3 PREVILCKDQ-DGKIGLRLKSIDN------GIFVQLVQANSPASLVG-LRFGDQVLQINGENCAGWSSDKAHKVLKQAFG   74 (85)
T ss_dssp             CEEEEEECCT-TSCCSEEEEEETT------EEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHHHCCS
T ss_pred             CEEEEEEeCC-CCCEeEEEEeCCC------CEEEEEECCCCHHHHcC-CCCccEEEEECCEEeCCCCHHHHHHHHhcCCC
Confidence            3678999887 4789999987643      89999999999999999 99999999999999999999999999998865


Q ss_pred             CcEEEEEEeC
Q psy1156         656 GSISLHICRR  665 (671)
Q Consensus       656 ~~VtL~V~Rr  665 (671)
                      ..|+|+|.++
T Consensus        75 ~~v~l~v~~r   84 (85)
T d1w9ea1          75 EKITMTIRDR   84 (85)
T ss_dssp             SEEEEEEECC
T ss_pred             CEEEEEEeCC
Confidence            6799999664

>d1uhpa_ b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1095
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=1.1e-14  Score=128.78  Aligned_cols=92  Identities=28%  Similarity=0.361  Sum_probs=79.4

Q ss_pred             CCeEEEEEEeCCCCCcccEEEeeecCCCC----CCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHH
Q psy1156         386 EGQTMVRVNRRDFNEELGIYIAKIKNSSE----GNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKS  461 (671)
Q Consensus       386 ~~~~~V~L~k~~~~~~LGfsI~gg~~~~~----g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~  461 (671)
                      ...++|+|.|..  ++|||+|.||.....    ....||||..|.++|||+++|+|++||+|++|||+++.+++|++|+.
T Consensus         7 g~~~~V~l~k~~--~~lGf~i~GG~~~~~~~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNg~~v~~~t~~eav~   84 (107)
T d1uhpa_           7 GKSLTLVLHRDS--GSLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRIIEVNGRDLSRATHDQAVE   84 (107)
T ss_dssp             SEEEEEEECCSS--SCCSEEEECCCSCCCCTTSSCSCCCEEEEECSSSHHHHTTCCCSSCEEEEETTEECTTCCHHHHHH
T ss_pred             CCEEEEEEEECC--CccCEEEEecccCCCcccccCCCCEEEEEECCCCHHHHhCCCcceeEEeEECCEECCCCCHHHHHH
Confidence            456889998754  789999998865321    11378999999999999999999999999999999999999999999


Q ss_pred             HHhcCCCeEEEEEEeCCc
Q psy1156         462 IISSGPLNMDLLISRTSL  479 (671)
Q Consensus       462 ~L~~~g~~V~L~V~R~~~  479 (671)
                      +|+.++..+.|+|.|...
T Consensus        85 ~lk~~~~~v~l~v~r~~~  102 (107)
T d1uhpa_          85 AFKTAKEPIVVQVLRRTS  102 (107)
T ss_dssp             HHHHCCSSEEEEEEECCS
T ss_pred             HHHhCCCcEEEEEEECCC
Confidence            999999999999988543

>d1ueza_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=3.3e-15  Score=131.01  Aligned_cols=87  Identities=28%  Similarity=0.540  Sum_probs=76.0

Q ss_pred             ceeeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcC
Q psy1156         575 TFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIK  654 (671)
Q Consensus       575 ~~~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg  654 (671)
                      +.+.|+|.+.+...+|||.|.++.+..   .|+||..|.++|||+++| |++||+||+|||++|.+++|.+|+++|+..+
T Consensus         8 ~~~~v~l~r~~~~~glG~~i~gg~~~~---~~i~V~~v~~gg~A~~~g-L~~GD~Il~ING~~v~~~~~~~v~~ll~~~~   83 (101)
T d1ueza_           8 EVRLVSLRRAKAHEGLGFSIRGGSEHG---VGIYVSLVEPGSLAEKEG-LRVGDQILRVNDKSLARVTHAEAVKALKGSK   83 (101)
T ss_dssp             CCEEECCCCCCTTTCSSEEEEECTTTT---CCEEEEEECTTSHHHHHT-CCSSCCEEEETTEECSSCCHHHHHHHSSSSS
T ss_pred             CEEEEEEEECCCCCeeCEEEEecccCC---CCEEEEEECCCChHHhcC-CCCCcEEEEECCEECCCCCHHHHHHHHhcCC
Confidence            567888988876678999999987754   589999999999999999 9999999999999999999999999999874


Q ss_pred             CCcEEEEEEeCCC
Q psy1156         655 NGSISLHICRRLK  667 (671)
Q Consensus       655 ~~~VtL~V~Rr~~  667 (671)
                        .+.|+|.|+.+
T Consensus        84 --~~~l~V~~~~~   94 (101)
T d1ueza_          84 --KLVLSVYSAGR   94 (101)
T ss_dssp             --SCCEEECCCCC
T ss_pred             --CEEEEEEECCC
Confidence              57777777654

>d1tp5a1 b.36.1.1 (A:302-403) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synaptic protein PSD-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.55  E-value=1.2e-14  Score=127.53  Aligned_cols=88  Identities=25%  Similarity=0.397  Sum_probs=79.4

Q ss_pred             CCCeEEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHh
Q psy1156         385 QEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIIS  464 (671)
Q Consensus       385 ~~~~~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~  464 (671)
                      +.+++.|+|.|..  .+|||+|.++.+.     .|+||..|.+||||+++|.|++||+|++|||+.|.+++|++|+.+|+
T Consensus         7 ~~~~r~V~l~k~~--~glG~~i~~~~~~-----~gv~V~~v~~gs~A~~~G~l~~GD~Il~INg~~v~~~~~~ev~~~l~   79 (102)
T d1tp5a1           7 PREPRRIVIHRGS--TGLGFNIVGGEDG-----EGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALK   79 (102)
T ss_dssp             CCSCEEEEEECTT--SCCCEEEEECGGG-----CCEEEEEECTTSHHHHHSCCCTTEEEEEETTEECTTCCHHHHHHHHH
T ss_pred             CCCCEEEEEEeCC--CcccEEEEeccCC-----CCEEEEEecCCchHHHcCCCcccCEEEEECCeEcCCCCHHHHHHHHH
Confidence            4467899998854  7899999987653     78999999999999999999999999999999999999999999999


Q ss_pred             cCCCeEEEEEEeCCc
Q psy1156         465 SGPLNMDLLISRTSL  479 (671)
Q Consensus       465 ~~g~~V~L~V~R~~~  479 (671)
                      .++..++|+|.+...
T Consensus        80 ~~~~~v~L~v~~~~~   94 (102)
T d1tp5a1          80 NAGQTVTIIAQYKPE   94 (102)
T ss_dssp             TSCSEEEEEEEECHH
T ss_pred             cCCCeEEEEEEECCc
Confidence            889999999988543

>d1x45a1 b.36.1.1 (A:8-92) Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=1.9e-14  Score=122.33  Aligned_cols=83  Identities=30%  Similarity=0.451  Sum_probs=69.5

Q ss_pred             eEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcCC-C
Q psy1156         578 TIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKN-G  656 (671)
Q Consensus       578 ~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg~-~  656 (671)
                      .|.|.|.++ .+|||+|.++.... ...|+||.+|.|+|||+++|+|++||+|++|||++|.+++|++|+++|++++. .
T Consensus         1 eV~l~k~~g-~~LGi~i~~~~~~~-~~~~i~I~~v~~gg~A~~~G~l~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~~   78 (85)
T d1x45a1           1 DVFIEKQKG-EILGVVIVESGWGS-ILPTVIIANMMHGGPAEKSGKLNIGDQIMSINGTSLVGLPLSTCQSIIKGLKNQS   78 (85)
T ss_dssp             EEEEECCTT-SCCCEEEECCTTTS-SSCCCEEEEECTTCHHHHHCSCCTTCEEEEETTEECTTCCHHHHHHHHHTTTTCS
T ss_pred             CeEEEeCCC-CccCEEEEeCCCCC-CCCCEEEEEeCCCCHHHHcCCCCcCCEEEEECCEECCCCCHHHHHHHHHcCCCCC
Confidence            478888875 79999997543221 13489999999999999999999999999999999999999999999998752 3


Q ss_pred             cEEEEE
Q psy1156         657 SISLHI  662 (671)
Q Consensus       657 ~VtL~V  662 (671)
                      .|+|.|
T Consensus        79 ~v~L~V   84 (85)
T d1x45a1          79 RVKLNI   84 (85)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            577766

>d1i16a_ b.36.1.2 (A:) Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Interleukin 16
domain: Interleukin 16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=9.3e-15  Score=133.31  Aligned_cols=92  Identities=27%  Similarity=0.424  Sum_probs=79.7

Q ss_pred             CCCeEEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHh
Q psy1156         385 QEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIIS  464 (671)
Q Consensus       385 ~~~~~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~  464 (671)
                      +..++.|+|.|..  ++|||+|.||.+...++ .||||..|.+||+|+++|+|++||+|++|||+.+.+++|++|+.+|+
T Consensus        27 ~~~~~~V~l~k~~--~glG~~i~gg~~~~~~~-~~i~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~~~~~t~~eav~~l~  103 (130)
T d1i16a_          27 EATVCTVTLEKMS--AGLGFSLEGGKGSLHGD-KPLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIK  103 (130)
T ss_dssp             SEEEEEEEEETTS--SSTTEEEECCCCCSSSC-CCCEEEEECSSCCCSSSCCCCTTCCEEECSSCBGGGSCHHHHHHHHH
T ss_pred             CCeEEEEEEEeCC--CccCEEEeeccCCCCCC-CCEEEEEECCCChHHhcCCcccCceeeeECCeecCCCcHHHHHHHHH
Confidence            3456788888753  78999999987755455 78999999999999999999999999999999999999999999999


Q ss_pred             cCC-CeEEEEEEeCCc
Q psy1156         465 SGP-LNMDLLISRTSL  479 (671)
Q Consensus       465 ~~g-~~V~L~V~R~~~  479 (671)
                      ..+ ..|.|+|.|...
T Consensus       104 ~~~~~~v~l~v~r~~~  119 (130)
T d1i16a_         104 ALPDGPVTIVIRRKSL  119 (130)
T ss_dssp             TSCSSEEEEEEEEESS
T ss_pred             cCCCCeEEEEEEcCCC
Confidence            754 589999988644

>d2fnea1 b.36.1.1 (A:1955-2042) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Multiple PDZ domain protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=6.2e-15  Score=125.98  Aligned_cols=86  Identities=29%  Similarity=0.426  Sum_probs=76.9

Q ss_pred             CeEEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhcC
Q psy1156         387 GQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSG  466 (671)
Q Consensus       387 ~~~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~~  466 (671)
                      .+++|+|.|..  ++|||+|.++.+...+. .++||..|.++|||+++|.|++||+|++|||+++.+++|.+++.+|+++
T Consensus         2 ~~~~V~l~K~~--~~lG~~i~~g~~~~~~~-~~i~I~~v~~~g~A~~~g~l~~GD~Il~INg~~v~~~~~~~v~~~l~~~   78 (88)
T d2fnea1           2 QCKSITLERGP--DGLGFSIVGGYGSPHGD-LPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRT   78 (88)
T ss_dssp             EEEEEEECCBT--TBTSEEEEEEEEETTEE-EEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHC
T ss_pred             eEEEEEEEeCC--CccCEEEEeccCCCCCC-cCEEEEEEcCCChHHHhCCCcCCcEEEEECCEECCCCCHHHHHHHHHcC
Confidence            46889998753  68999999887654444 6899999999999999999999999999999999999999999999999


Q ss_pred             CCeEEEEEE
Q psy1156         467 PLNMDLLIS  475 (671)
Q Consensus       467 g~~V~L~V~  475 (671)
                      +..++|+|.
T Consensus        79 ~~~v~L~Vl   87 (88)
T d2fnea1          79 KGTVTLMVL   87 (88)
T ss_dssp             CSSEEEEEE
T ss_pred             CCcEEEEEE
Confidence            999999985

>d1n7ea_ b.36.1.1 (A:) Glutamate receptor-interacting protein 1, GRIP1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor-interacting protein 1, GRIP1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.54  E-value=2.1e-14  Score=124.36  Aligned_cols=87  Identities=24%  Similarity=0.449  Sum_probs=78.1

Q ss_pred             CeEEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhcC
Q psy1156         387 GQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSG  466 (671)
Q Consensus       387 ~~~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~~  466 (671)
                      .+++|.|.|.  +++|||+|.++.+..    .++||..|.++|||+++|+|++||+|++|||++|.+++|.+++.+|+++
T Consensus         3 ~i~tV~l~k~--~~~lG~~i~g~~~~~----~~v~I~~I~~g~~A~~~g~L~~GD~Il~INg~~v~~~~~~ev~~~l~~~   76 (95)
T d1n7ea_           3 IIYTVELKRY--GGPLGITISGTEEPF----DPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMA   76 (95)
T ss_dssp             CEEEEEEECT--TSCCCEEEECCSSTT----SCCEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHTC
T ss_pred             EEEEEEEEEC--CCcEeEEEEecccCC----CCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence            4678999774  489999999876543    6799999999999999999999999999999999999999999999988


Q ss_pred             CCeEEEEEEeCCc
Q psy1156         467 PLNMDLLISRTSL  479 (671)
Q Consensus       467 g~~V~L~V~R~~~  479 (671)
                      ++.+.|+|.|...
T Consensus        77 ~~~v~l~v~r~~~   89 (95)
T d1n7ea_          77 GETVTLKIKKQTD   89 (95)
T ss_dssp             CSEEEEEEECCCC
T ss_pred             CCeEEEEEEECCC
Confidence            9999999988654

>d1rgwa_ b.36.1.1 (A:) Zasp (Cypher, Oracle 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Zasp (Cypher, Oracle 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=8.7e-15  Score=124.28  Aligned_cols=82  Identities=20%  Similarity=0.312  Sum_probs=74.4

Q ss_pred             EEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhcCCC
Q psy1156         389 TMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPL  468 (671)
Q Consensus       389 ~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~~g~  468 (671)
                      ++|+|.+   +++|||+|.++.+..    .++||..|.+|+||+++| |++||+|++|||+++.+++|++++.+|+.++.
T Consensus         3 ~~V~l~~---~~~~Gf~i~gg~~~~----~~v~V~~v~~gs~A~~~~-L~~GD~Il~VNg~~v~~~s~~ev~~~i~~~~~   74 (85)
T d1rgwa_           3 YSVTLTG---PGPWGFRLQGGKDFN----MPLTISRITPGSKAAQSQ-LSQGDLVVAIDGVNTDTMTHLEAQNKIKSASY   74 (85)
T ss_dssp             EEEEECC---SSCCCEEECCCGGGT----SCCBEEEECTTSHHHHSS-CCCCSBEEEETTEECTTCCHHHHHHHHTTCSS
T ss_pred             EEEEecC---CCCCCEEEEeecCCC----CCEEEEEecCCChHHhCC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCC
Confidence            6788854   379999999987654    789999999999999888 99999999999999999999999999999999


Q ss_pred             eEEEEEEeCC
Q psy1156         469 NMDLLISRTS  478 (671)
Q Consensus       469 ~V~L~V~R~~  478 (671)
                      .+.|+|.|.+
T Consensus        75 ~v~L~V~R~~   84 (85)
T d1rgwa_          75 NLSLTLQKSK   84 (85)
T ss_dssp             CEEEEEESCC
T ss_pred             EEEEEEEECC
Confidence            9999999865

>d1r6ja_ b.36.1.1 (A:) Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntenin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=2.4e-14  Score=120.99  Aligned_cols=77  Identities=27%  Similarity=0.374  Sum_probs=69.6

Q ss_pred             ceeeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcC
Q psy1156         575 TFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIK  654 (671)
Q Consensus       575 ~~~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg  654 (671)
                      ..++|+|.|.. .+.|||+|.++          +|.+|.++|||+++| |++||+|++|||+++.+++|++|+++|++++
T Consensus         4 ~pr~V~l~k~~-~g~~Gf~i~~g----------~V~~v~~g~~A~~~G-l~~GD~Il~INg~~v~~~t~~~~~~ll~~~~   71 (82)
T d1r6ja_           4 DPRTITMHKDS-TGHVGFIFKNG----------KITSIVKDSSAARNG-LLTEHNICEINGQNVIGLKDSQIADILSTSG   71 (82)
T ss_dssp             CCEEEEEECCT-TSCCCEEEETT----------EEEEECTTSHHHHHT-CCSSEEEEEETTEECTTCCHHHHHHHHHHSC
T ss_pred             CCEEEEEEeCC-CCCcCEEEEEE----------EEEEECCCChHHhcC-cCCCCEEEEeCCeEEeeCCHHHHHHHHHcCC
Confidence            45789999986 36799999754          799999999999999 9999999999999999999999999999985


Q ss_pred             CCcEEEEEEe
Q psy1156         655 NGSISLHICR  664 (671)
Q Consensus       655 ~~~VtL~V~R  664 (671)
                       +.|+|+|..
T Consensus        72 -~~v~l~v~p   80 (82)
T d1r6ja_          72 -TVVTITIMP   80 (82)
T ss_dssp             -SEEEEEEEE
T ss_pred             -CEEEEEEEc
Confidence             889999864

>d1v62a_ b.36.1.1 (A:) Glutamate receptor interacting protein 2, GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein 2, GRIP2 (KIAA1719)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=1.4e-14  Score=129.88  Aligned_cols=88  Identities=26%  Similarity=0.333  Sum_probs=77.4

Q ss_pred             eeeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcCC
Q psy1156         576 FHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKN  655 (671)
Q Consensus       576 ~~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg~  655 (671)
                      .+.|.|.|.++ .+|||.|.++.+..  ..|+||..|.++|+|+++|+|++||+||+|||++|.+++|++|+.+|++++ 
T Consensus        16 p~~V~l~k~~~-~~lGi~i~~~~~~~--~~gi~V~~I~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~~v~~~l~~~~-   91 (117)
T d1v62a_          16 PLMVEIVKTPG-SALGISLTTTSLRN--KSVITIDRIKPASVVDRSGALHPGDHILSIDGTSMEHCSLLEATKLLASIS-   91 (117)
T ss_dssp             SEEEEEECCTT-CCCCCEEEEECCSS--SCEEEEEECCTTSHHHHHTCCCTTCBEEEETTEETTSCCHHHHHHHHHSCS-
T ss_pred             CEEEEEEcCCC-CCcCEEEEeeccCC--CCCEEEEEECCCCHHHHcCCCChhheeeeECCEecCCCCHHHHHHHHHcCC-
Confidence            46799998863 68999999876532  358999999999999999999999999999999999999999999999985 


Q ss_pred             CcEEEEEEeCCC
Q psy1156         656 GSISLHICRRLK  667 (671)
Q Consensus       656 ~~VtL~V~Rr~~  667 (671)
                      ..|.|+|.|...
T Consensus        92 ~~v~l~v~~~~~  103 (117)
T d1v62a_          92 EKVRLEILPVPQ  103 (117)
T ss_dssp             SEEEEEECCBTT
T ss_pred             CcEEEEEEECCC
Confidence            789999987654

>d1ujda_ b.36.1.1 (A:) Hypothetical protein KIAA0559 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA0559
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=1.5e-14  Score=129.91  Aligned_cols=89  Identities=34%  Similarity=0.535  Sum_probs=75.3

Q ss_pred             eEEEeeCCC-----CCcccEEEecCCCCC--CCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHH
Q psy1156         578 TIVFEKGPG-----KKGLGFTIVGGKDSP--RGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLF  650 (671)
Q Consensus       578 ~V~L~K~~g-----~~~LGfsL~Gg~ds~--~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lL  650 (671)
                      .|.+.+...     ..+|||.|.|+.+.+  .+..||||..|.++|+|+++|+|++||+||+|||++|.+++|++|+++|
T Consensus        15 ~v~l~r~~~~~~~~g~glG~~i~gg~~~~~~~~~~gi~I~~V~~gs~A~~~G~L~~GD~Il~INg~~v~~~s~~e~~~~i   94 (117)
T d1ujda_          15 RIKITRDSKDHTVSGNGLGIRIVGGKEIPGHSGEIGAYIAKILPGGSAEQTGKLMEGMQVLEWNGIPLTSKTYEEVQSII   94 (117)
T ss_dssp             EEEECCCSSSSCSSCCSCSEEEEEEEECSSSSSCEEEEEEEECTTCHHHHHSSCCTTCEEEEETTEECTTCCHHHHHHHH
T ss_pred             eEEEEecccccccCCcccCEEEeccccCCCCCCCcCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCcHHHHHHHH
Confidence            455555432     257999999886654  2456899999999999999999999999999999999999999999999


Q ss_pred             HhcCCCcEEEEEEeCCC
Q psy1156         651 KTIKNGSISLHICRRLK  667 (671)
Q Consensus       651 K~sg~~~VtL~V~Rr~~  667 (671)
                      ++++ ..|.|+|.|...
T Consensus        95 ~~~~-~~v~l~v~r~~~  110 (117)
T d1ujda_          95 SQQS-GEAEICVRLDLN  110 (117)
T ss_dssp             SCCS-SCEEEEEESSCC
T ss_pred             HcCC-CeEEEEEEECCC
Confidence            9885 789999988753

>d1vb7a_ b.36.1.1 (A:) PDZ-LIM protein mystique {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: PDZ-LIM protein mystique
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.53  E-value=8.5e-15  Score=126.67  Aligned_cols=76  Identities=32%  Similarity=0.504  Sum_probs=69.2

Q ss_pred             CCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcCCCcEEEEEEeCC
Q psy1156         587 KKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKNGSISLHICRRL  666 (671)
Q Consensus       587 ~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg~~~VtL~V~Rr~  666 (671)
                      ..+|||+|.++.+..   .++||..|.|++||+++| |++||+||+|||++|.+++|.+|+++|+.++ ..|.|+|.|+.
T Consensus        15 ~~~~Gf~i~gg~d~~---~~i~V~~v~~gs~A~~~g-L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~-~~v~L~V~R~~   89 (94)
T d1vb7a_          15 PAPWGFRISGGRDFH---TPIIVTKVTERGKAEAAD-LRPGDIIVAINGQSAENMLHAEAQSKIRQSA-SPLRLQLDRSS   89 (94)
T ss_dssp             SSCCSBCCEEETTTT---EEEECCCBCTTSSHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHTCC-SSEEEEEECCC
T ss_pred             CCcCCEEEEeeccCC---CCEEEEeccCCChhhhCC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCC-CeEEEEEEECC
Confidence            378999999987753   579999999999999988 9999999999999999999999999999985 89999999865


Q ss_pred             C
Q psy1156         667 K  667 (671)
Q Consensus       667 ~  667 (671)
                      .
T Consensus        90 ~   90 (94)
T d1vb7a_          90 G   90 (94)
T ss_dssp             C
T ss_pred             C
Confidence            4

>d1whaa_ b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=1.6e-14  Score=127.21  Aligned_cols=92  Identities=28%  Similarity=0.472  Sum_probs=79.7

Q ss_pred             CCeEEEEEEeCCCCCcccEEEeeecCCCCC--CcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHH
Q psy1156         386 EGQTMVRVNRRDFNEELGIYIAKIKNSSEG--NIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSII  463 (671)
Q Consensus       386 ~~~~~V~L~k~~~~~~LGfsI~gg~~~~~g--~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L  463 (671)
                      .+.+.|+|.|..  ++|||+|.++......  ...|+||..|.++|||+++|.|++||+|++|||++|.+++|++++.+|
T Consensus         6 ~~~~~v~l~k~~--~glGf~i~gg~~~~~~~~~~~gi~V~~v~~gs~A~~~G~L~~GD~Il~INg~~v~~~~~~ev~~~l   83 (105)
T d1whaa_           6 SGRHVACLARSE--RGLGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGDRVLSINGVDVTEARHDHAVSLL   83 (105)
T ss_dssp             CEEEEEEECCCT--TCCSCEEECCTTSCCSSTTCCSCEEEECCTTSSHHHHSSCCTTCEEEEESSCBCTTCCHHHHHHHH
T ss_pred             CCCEEEEEEECC--CccCEEEEeccCCcccccCCCCEEEEEEcCCCchhhcCCccCCCEEEEECCEEcCCCcHHHHHHHH
Confidence            456789998854  6799999988654321  137899999999999999999999999999999999999999999999


Q ss_pred             hcCCCeEEEEEEeCCc
Q psy1156         464 SSGPLNMDLLISRTSL  479 (671)
Q Consensus       464 ~~~g~~V~L~V~R~~~  479 (671)
                      +.++..|.|+|.|...
T Consensus        84 ~~~~~~v~l~v~R~~~   99 (105)
T d1whaa_          84 TAASPTIALLLEREAG   99 (105)
T ss_dssp             TSCCSCEEEEEEECCC
T ss_pred             HcCCCeEEEEEEECCC
Confidence            9989999999998653

>d1g9oa_ b.36.1.1 (A:) Na+/H+ exchanger regulatory factor, NHERF {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Na+/H+ exchanger regulatory factor, NHERF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=3.1e-14  Score=122.49  Aligned_cols=83  Identities=24%  Similarity=0.314  Sum_probs=75.2

Q ss_pred             eEEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhcCC
Q psy1156         388 QTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGP  467 (671)
Q Consensus       388 ~~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~~g  467 (671)
                      ++.|+|.|..  .+|||+|.++...     .++||..|.+||||+++| |++||+|++|||++|.+++|++++.+|++++
T Consensus         4 Pr~v~l~k~~--~g~Gf~i~~~~~~-----~~~~V~~V~~g~~A~~aG-l~~GD~Il~VNg~~v~~~t~~e~~~ll~~~~   75 (91)
T d1g9oa_           4 PRLCCLEKGP--NGYGFHLHGEKGK-----LGQYIRLVEPGSPAEKAG-LLAGDRLVEVNGENVEKETHQQVVSRIRAAL   75 (91)
T ss_dssp             CEEEEEECBT--TBCCEEEEECTTC-----SSEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHHTCS
T ss_pred             CEEEEEEECC--CeeeEEEEecCCC-----CCEEEEEEcCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            4789999864  6799999987543     789999999999999999 9999999999999999999999999999999


Q ss_pred             CeEEEEEEeCC
Q psy1156         468 LNMDLLISRTS  478 (671)
Q Consensus       468 ~~V~L~V~R~~  478 (671)
                      ..++|+|.+..
T Consensus        76 ~~v~L~v~~~~   86 (91)
T d1g9oa_          76 NAVRLLVVDPE   86 (91)
T ss_dssp             SEEEEEEECCC
T ss_pred             CeEEEEEECCC
Confidence            99999998743

>d1vaea_ b.36.1.1 (A:) Rhophilin-2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Rhophilin-2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.52  E-value=4e-15  Score=132.55  Aligned_cols=81  Identities=28%  Similarity=0.421  Sum_probs=72.0

Q ss_pred             eeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcCCC
Q psy1156         577 HTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKNG  656 (671)
Q Consensus       577 ~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg~~  656 (671)
                      +.|+|.|..  ++|||+|.++       .|+||..|.++|||+++| |++||+|++|||++|.+++|++|+++|+.++..
T Consensus        17 r~v~l~k~~--~g~Gf~i~g~-------~~v~V~~V~~~spA~~~G-L~~GD~Il~INg~~v~~~~~~ev~~llk~~~~~   86 (111)
T d1vaea_          17 RGIHFTVEE--GDLGFTLRGN-------TPVQVHFLDPHCSASLAG-AKEGDYIVSIQGVDCKWLTVSEVMKLLKSFGGE   86 (111)
T ss_dssp             CCCCEECCS--SCCSCCEESS-------SSCEECCCCTTSSHHHHH-CCTTCEEEEETTEECSSCCHHHHHHHHHHTTTS
T ss_pred             EEEEEEECC--CccCEEEECC-------ccEEEEEEcCCChHHhcc-cCcccEEEEECCEEcCCCCHHHHHHHHHcCCCC
Confidence            468888876  6899999865       368999999999999999 999999999999999999999999999998756


Q ss_pred             cEEEEEEeCCC
Q psy1156         657 SISLHICRRLK  667 (671)
Q Consensus       657 ~VtL~V~Rr~~  667 (671)
                      .|.|+|.+...
T Consensus        87 ~v~l~v~~~~~   97 (111)
T d1vaea_          87 EVEMKVVSLLD   97 (111)
T ss_dssp             EECEEEECEEC
T ss_pred             eEEEEEECCCC
Confidence            79998877553

>d1p1da2 b.36.1.1 (A:115-213) Glutamate receptor interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.52  E-value=2.4e-14  Score=124.71  Aligned_cols=91  Identities=27%  Similarity=0.476  Sum_probs=79.5

Q ss_pred             CCCeEEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHh
Q psy1156         385 QEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIIS  464 (671)
Q Consensus       385 ~~~~~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~  464 (671)
                      ..+.+.|+|.|. ...+|||.+.++.+...+  .++||..|.+||||+++|+|++||+|++|||+++.+++|.+++.+|+
T Consensus         8 ~~~~~~V~l~k~-~~~~lG~~v~~~~~~~~~--~~i~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~e~~~ll~   84 (99)
T d1p1da2           8 SSGTFHVKLPKK-HSVELGITISSPSSRKPG--DPLVISDIKKGSVAHRTGTLELGDKLLAIDNIRLDSCSMEDAVQILQ   84 (99)
T ss_dssp             CSSCEEEEECCC-SSCCCCCEEECSCSSSTT--CCCEEEECCSSSHHHHTSCCCTTCEEEEETTEEGGGCCHHHHHHHHH
T ss_pred             CCCcEEEEEEEC-CCCccCEEEEecCCCCCC--CCEEEEEEcCCchhhhcCCCCCCCEEEeeCCEECCCCCHHHHHHHHH
Confidence            346788999884 468999999987643211  57999999999999999999999999999999999999999999999


Q ss_pred             cCCCeEEEEEEeCC
Q psy1156         465 SGPLNMDLLISRTS  478 (671)
Q Consensus       465 ~~g~~V~L~V~R~~  478 (671)
                      +++..|+|+|.|+.
T Consensus        85 ~~~~~v~L~V~r~~   98 (99)
T d1p1da2          85 QCEDLVKLKIRKDE   98 (99)
T ss_dssp             HCTTCEEEEEECCC
T ss_pred             cCCCeEEEEEEeCC
Confidence            99999999998853

>d2csja1 b.36.1.1 (A:8-111) Tight junction protein ZO-2, Tjp2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Tight junction protein ZO-2, Tjp2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.52  E-value=1.9e-14  Score=126.59  Aligned_cols=88  Identities=27%  Similarity=0.493  Sum_probs=76.7

Q ss_pred             ceeeEEEeeCCCCCcccEEEecCCCCCC---CCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHH
Q psy1156         575 TFHTIVFEKGPGKKGLGFTIVGGKDSPR---GAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFK  651 (671)
Q Consensus       575 ~~~~V~L~K~~g~~~LGfsL~Gg~ds~~---g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK  651 (671)
                      ..++|+|.|.. ..+|||+|.++.+...   ...|+||.+|.++|||+ ++ |++||+||+|||++|.+++|.+|+++|+
T Consensus         7 e~~tV~l~k~~-~~~~G~~i~gg~~~~~~~~~~~~i~V~~v~~gs~A~-~~-L~~GD~Il~INg~~v~~~~~~ev~~ll~   83 (104)
T d2csja1           7 EQYTVTLQKDS-KRGFGIAVSGGRDNPHFENGETSIVISDVLPGGPAD-GL-LQENDRVVMVNGTPMEDVLHSFAVQQLR   83 (104)
T ss_dssp             EEEEEEEECCS-SSTTCEEEECCSSCCCCSSCCCBCEEEEECTTSSHH-HH-BCTTCEEEEESSCBCBTCCHHHHHHHHH
T ss_pred             ccEEEEEEeCC-CCCcCEEEEcccCCCccccCCCCEEEEEECCCChhh-cC-CCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            45689999986 4789999999876543   34689999999999996 45 9999999999999999999999999999


Q ss_pred             hcCCCcEEEEEEeCC
Q psy1156         652 TIKNGSISLHICRRL  666 (671)
Q Consensus       652 ~sg~~~VtL~V~Rr~  666 (671)
                      +++ ..|.|+|.|+.
T Consensus        84 ~~~-~~v~l~V~R~~   97 (104)
T d2csja1          84 KSG-KIAAIVVKRPR   97 (104)
T ss_dssp             HSC-SEEEEEEEEEE
T ss_pred             cCC-CEEEEEEEeCC
Confidence            985 78999998874

>d1x5qa1 b.36.1.1 (A:8-104) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=5e-14  Score=122.23  Aligned_cols=90  Identities=26%  Similarity=0.438  Sum_probs=78.2

Q ss_pred             CCCeEEEEEEeCCCCCcccEEEeeecCCCC--CCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHH
Q psy1156         385 QEGQTMVRVNRRDFNEELGIYIAKIKNSSE--GNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSI  462 (671)
Q Consensus       385 ~~~~~~V~L~k~~~~~~LGfsI~gg~~~~~--g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~  462 (671)
                      +.+.++|+|.|..  ++|||+|.++.....  +...|+||..|.+||||+++| |++||+|++|||+.+.+++|.+++.+
T Consensus         6 ~~~~~~v~l~k~~--~glG~~i~gg~~~~~~~~~~~~i~V~~V~~gg~A~~~G-L~~GD~Il~VNg~~v~~~~~~~~~~~   82 (97)
T d1x5qa1           6 EEEELTLTILRQT--GGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAG-VRVGDKLLEVNGVALQGAEHHEAVEA   82 (97)
T ss_dssp             CCEEEEEEEECSS--SSCSEEEEECTTSCCSSTTCCSEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHH
T ss_pred             CCeEEEEEEEeCC--CeeCEEEEeccCCCCccCCCCCEEEEEECCCChhHhhc-ccCCCEEEEECCEECCCCCHHHHHHH
Confidence            4456788888854  789999998875431  123689999999999999999 99999999999999999999999999


Q ss_pred             HhcCCCeEEEEEEeC
Q psy1156         463 ISSGPLNMDLLISRT  477 (671)
Q Consensus       463 L~~~g~~V~L~V~R~  477 (671)
                      |++++..+.|+|.|+
T Consensus        83 l~~~~~~v~l~v~R~   97 (97)
T d1x5qa1          83 LRGAGTAVQMRVWRE   97 (97)
T ss_dssp             HHSCCSEEEEEEEEC
T ss_pred             HhCCCCEEEEEEEEC
Confidence            999999999999984

>d1wg6a_ b.36.1.1 (A:) Partitioning-defective 3-like protein, PAR3-L (RIKEN cDNA 2810455b10) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Partitioning-defective 3-like protein, PAR3-L (RIKEN cDNA 2810455b10)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.52  E-value=8.7e-15  Score=133.42  Aligned_cols=90  Identities=36%  Similarity=0.587  Sum_probs=75.8

Q ss_pred             eeEEEeeCCCCCcccEEEecCCCCCCC-CcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcC-
Q psy1156         577 HTIVFEKGPGKKGLGFTIVGGKDSPRG-AIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIK-  654 (671)
Q Consensus       577 ~~V~L~K~~g~~~LGfsL~Gg~ds~~g-~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg-  654 (671)
                      ..|.+.+.. ..+|||+|.|+.+.+.+ ..|+||..|.++|+|+++|+|++||+||+|||++|.+++|.+|+++||+++ 
T Consensus        27 ~~v~l~~~~-~~glG~~i~gg~~~~~~~~~~i~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~e~~~~lr~a~~  105 (127)
T d1wg6a_          27 LEIPLNDSG-SAGLGVSLKGNKSRETGTDLGIFIKSIIHGGAAFKDGRLRMNDQLIAVNGETLLGKSNHEAMETLRRSMS  105 (127)
T ss_dssp             EEEECSSST-TTCCCCEEEEEEETTTTEEEEEEEEECCSSSSTHHHHTSCSCCBEEEETTEESTTSCHHHHHHHHHHHHH
T ss_pred             EEEEEccCC-CCcEeEEEEeecCCCCCCcCCEEEEEECCCCchhccCCCCCCCEEEeECCEECCCCCHHHHHHHHHhccc
Confidence            345555443 47899999998776543 358999999999999999999999999999999999999999999999762 


Q ss_pred             -----CCcEEEEEEeCCC
Q psy1156         655 -----NGSISLHICRRLK  667 (671)
Q Consensus       655 -----~~~VtL~V~Rr~~  667 (671)
                           ...|.|+|.|+..
T Consensus       106 ~~~~~~~~V~L~V~R~~~  123 (127)
T d1wg6a_         106 MEGNIRGMIQLVILRRSG  123 (127)
T ss_dssp             HHHHHTCEEEEEEEECSC
T ss_pred             ccCCCCCEEEEEEeeCCC
Confidence                 3589999998753

>d1x5na1 b.36.1.1 (A:8-108) Harmonin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Harmonin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=1.8e-14  Score=126.35  Aligned_cols=85  Identities=29%  Similarity=0.468  Sum_probs=73.4

Q ss_pred             ceeeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcC
Q psy1156         575 TFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIK  654 (671)
Q Consensus       575 ~~~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg  654 (671)
                      ..+.|.|.+.. ..+|||+|.++.+..   .|+||..|.++|||+++| |++||+||+|||++|.+++|.+|+++|+.++
T Consensus         8 ~~~~v~i~~~~-~~glG~~i~~g~~~~---~gi~V~~V~~gs~A~~~g-L~~GD~Il~VNg~~v~~~~~~~v~~~lk~~~   82 (101)
T d1x5na1           8 KEKKVFISLVG-SRGLGCSISSGPIQK---PGIFISHVKPGSLSAEVG-LEIGDQIVEVNGVDFSNLDHKEAVNVLKSSR   82 (101)
T ss_dssp             SSEEEEECCCS-SCCCCEEEEECCSSS---CSEEEEEECTTSTTTTTT-CCTTCEEEEETTEETTSCCTTHHHHHHHHCS
T ss_pred             ccEEEEEEeeC-CCcccEEEeccCCCC---CCEEEEEECCCChHHhCC-CCcccEEEEECCEECCCCCHHHHHHHHhCCC
Confidence            44678887764 478999999987643   589999999999999998 9999999999999999999999999999974


Q ss_pred             CCcEEEEEEeCC
Q psy1156         655 NGSISLHICRRL  666 (671)
Q Consensus       655 ~~~VtL~V~Rr~  666 (671)
                        .++|+|.++.
T Consensus        83 --~~~l~v~~~~   92 (101)
T d1x5na1          83 --SLTISIVAAA   92 (101)
T ss_dssp             --SEEEEECSST
T ss_pred             --CEEEEEEECC
Confidence              5777776653

>d1ujua_ b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=8.3e-15  Score=130.30  Aligned_cols=93  Identities=25%  Similarity=0.342  Sum_probs=80.1

Q ss_pred             CCeEEEEEEeCCCCCcccEEEeeecCCCCC-----CcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHH
Q psy1156         386 EGQTMVRVNRRDFNEELGIYIAKIKNSSEG-----NIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAK  460 (671)
Q Consensus       386 ~~~~~V~L~k~~~~~~LGfsI~gg~~~~~g-----~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av  460 (671)
                      ..++.|+|.|. ++++|||+|.||.....+     ...++||..|.++|||+++|+|++||+|++|||++|.+++|++|+
T Consensus         8 ~~~~~V~l~k~-~~~~lG~~i~gG~~~~~~~~~~~~~~gi~I~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~t~~ea~   86 (111)
T d1ujua_           8 PGLRELCIQKA-PGERLGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRLRVGLRLLEVNQQSLLGLTHGEAV   86 (111)
T ss_dssp             CSSSCEEEECC-TTCCCCEEEECCSSSSCSCSSCTTCCCCEEEEECTTSHHHHHSSCCTTCBCCBBSSCBCTTSCHHHHH
T ss_pred             CCeEEEEEEeC-CCCccCEEEeccccCCcccccccCCCCEEEEEECCCChHHHcCCCccceeeeeeCCcccCCCCHHHHH
Confidence            45678999885 568999999987653311     136899999999999999999999999999999999999999999


Q ss_pred             HHHhcCCCeEEEEEEeCCc
Q psy1156         461 SIISSGPLNMDLLISRTSL  479 (671)
Q Consensus       461 ~~L~~~g~~V~L~V~R~~~  479 (671)
                      .+|+.++..|+|+|.|...
T Consensus        87 ~~lk~~~~~v~L~V~r~~~  105 (111)
T d1ujua_          87 QLLRSVGDTLTVLVCDGFE  105 (111)
T ss_dssp             HHHSSCSSEEEECCCCCCC
T ss_pred             HHHHcCCCeEEEEEEECCC
Confidence            9999999999999987543

>d1va8a1 b.36.1.1 (A:8-107) Maguk p55 subfamily member 5 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Maguk p55 subfamily member 5
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.51  E-value=3.9e-14  Score=123.91  Aligned_cols=81  Identities=28%  Similarity=0.437  Sum_probs=73.1

Q ss_pred             ceeeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcC
Q psy1156         575 TFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIK  654 (671)
Q Consensus       575 ~~~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg  654 (671)
                      ..+.|.|.|.. ..+|||+|.++.      .|+||.+|.++|+|+++|+|++||+|++|||++|.+++|++|+++|++++
T Consensus        18 ~i~~V~l~k~~-~~~lG~~v~~~~------~~i~I~~V~~gs~A~~~g~l~~GD~Il~VNg~~v~~~~~~~~~~ll~~~~   90 (100)
T d1va8a1          18 TVKIVRIEKAR-DIPLGATVRNEM------DSVIISRIVKGGAAEKSGLLHEGDEVLEINGIEIRGKDVNEVFDLLSDMH   90 (100)
T ss_dssp             ECEEEEEEECT-TCCCCEEEEECS------SSEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHHCC
T ss_pred             eEEEEEEEeCC-CCCccEEEEecC------CCEEEEEECCCChhhhhcccCccCEEEEECCEEEcCCCHHHHHHHHHcCC
Confidence            45678999986 478999998764      37999999999999999999999999999999999999999999999985


Q ss_pred             CCcEEEEEE
Q psy1156         655 NGSISLHIC  663 (671)
Q Consensus       655 ~~~VtL~V~  663 (671)
                       ++|+|+|.
T Consensus        91 -~~v~L~v~   98 (100)
T d1va8a1          91 -GTLTFVLI   98 (100)
T ss_dssp             -EEEEEEEE
T ss_pred             -CeEEEEEE
Confidence             78999885

>d1v5qa_ b.36.1.1 (A:) Glutamate receptor interacting protein {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.51  E-value=2.1e-14  Score=130.04  Aligned_cols=92  Identities=25%  Similarity=0.311  Sum_probs=76.6

Q ss_pred             ceeeEEEeeCCCCCcccEEEecCCCCCC-CCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhc
Q psy1156         575 TFHTIVFEKGPGKKGLGFTIVGGKDSPR-GAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTI  653 (671)
Q Consensus       575 ~~~~V~L~K~~g~~~LGfsL~Gg~ds~~-g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~s  653 (671)
                      ....|+|.+.+ ..+|||.|.|+.+... ...|+||..|.|+|+|+++|+|++||+||+|||++|.+++|++|+++|+++
T Consensus        15 ~~~ev~l~k~~-~~glGf~i~gg~~~~~~~~~~i~V~~I~~gg~A~~~G~L~~GD~Il~INg~~v~~~~~~e~~~~lk~~   93 (122)
T d1v5qa_          15 ETTEVVLTADP-VTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDS   93 (122)
T ss_dssp             EEEEEEECCCS-SSSSCEEEECCSCCSSSCSSCCEEEEECTTSHHHHSCCCCTTCCEEEETTEESSSSCHHHHHHHHHHH
T ss_pred             eeEEEEEecCC-CCccCEEEecccCCCccCCCCeEEEEECCCCHHHHhCCCCcCCEEEEECCCcCCCCCHHHHHHHHHcC
Confidence            45678898876 4689999999876542 346899999999999999999999999999999999999999999999988


Q ss_pred             CC-CcEEEEEEeCCC
Q psy1156         654 KN-GSISLHICRRLK  667 (671)
Q Consensus       654 g~-~~VtL~V~Rr~~  667 (671)
                      +. ..++|++.++..
T Consensus        94 ~~~~~l~l~~~~~~~  108 (122)
T d1v5qa_          94 SITSKVTLEIEFDVA  108 (122)
T ss_dssp             TTTTCEEEEEEEECC
T ss_pred             CCceEEEEEEeccCC
Confidence            52 246666666543

>d1v6ba_ b.36.1.1 (A:) Harmonin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Harmonin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.51  E-value=2.2e-14  Score=129.19  Aligned_cols=79  Identities=29%  Similarity=0.455  Sum_probs=70.2

Q ss_pred             CcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhc---CCCcEEEEEEe
Q psy1156         588 KGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTI---KNGSISLHICR  664 (671)
Q Consensus       588 ~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~s---g~~~VtL~V~R  664 (671)
                      .+|||.|.||.+.+.  .+|||.+|.++|+|+++|+|++||+|++|||++|.+++|.+|+.+|+++   +...|+|+|.|
T Consensus        28 ~~lG~~i~gg~d~~~--~~v~I~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~~~~~V~L~v~r  105 (118)
T d1v6ba_          28 GSLDLALEGGVDSPV--GKVVVSAVYEGGAAERHGGVVKGDEIMAINGKIVTDYTLAEAEAALQKAWNQGGDWIDLVVAV  105 (118)
T ss_dssp             SCCCCEEEEBTTSSS--CSEEEEECCTTSHHHHHCSSCTTCEEEEESSCBCTTCBHHHHHHHHHHHHHHTCSEEEEEEEC
T ss_pred             CCCCEEEEeeecCCC--CCEEEEEECCCChHHhcCCCCCCCEEeeECCEECCCCcHHHHHHHHHhcccCCCCEEEEEEEe
Confidence            689999999987652  3799999999999999999999999999999999999999999999975   23569999999


Q ss_pred             CCCC
Q psy1156         665 RLKS  668 (671)
Q Consensus       665 r~~~  668 (671)
                      ..+.
T Consensus       106 ~pp~  109 (118)
T d1v6ba_         106 CPPK  109 (118)
T ss_dssp             CCSC
T ss_pred             CCCC
Confidence            7643

>d1rzxa_ b.36.1.1 (A:) GTPase-binding domain of the cell polarity protein par6 (Par-6B) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: GTPase-binding domain of the cell polarity protein par6 (Par-6B)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.51  E-value=2.7e-14  Score=124.37  Aligned_cols=90  Identities=29%  Similarity=0.503  Sum_probs=77.8

Q ss_pred             CeEEEEEEeCCCCCcccEEEeeecCCCC---C--CcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHH
Q psy1156         387 GQTMVRVNRRDFNEELGIYIAKIKNSSE---G--NIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKS  461 (671)
Q Consensus       387 ~~~~V~L~k~~~~~~LGfsI~gg~~~~~---g--~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~  461 (671)
                      ..+.|+|.|....++|||+|.+|.....   +  ...|+||..|.|||||+++|+|++||+|++|||+++.+++|.+++.
T Consensus         2 ~~r~V~L~k~~~~~~lG~~i~gg~~~~~~~~~~~~~~gi~I~~v~~gg~A~~~G~l~~GD~Il~VNg~~v~~~~~~~~~~   81 (98)
T d1rzxa_           2 THRRVRLLKHGSDKPLGFYIRDGTSVRVTASGLEKQPGIFISRLVPGGLAESTGLLAVNDEVIEVNGIEVAGKTLDQVTD   81 (98)
T ss_dssp             CCEEEEEECCCSSSCCSEEEEEEEEEECCSSSCEEEEEEEEEEECTTCHHHHHTCCCTTCEEEEETTEECTTCCHHHHHH
T ss_pred             CcEEEEEEECCCCCcccEEEecccCCCccccCccCCCCEEEEEECCCChHHhcCcCCCCcEEeeECCEECCCCCHHHHHH
Confidence            3478999997777899999998764321   1  1257999999999999999999999999999999999999999999


Q ss_pred             HHhcCCCeEEEEEEe
Q psy1156         462 IISSGPLNMDLLISR  476 (671)
Q Consensus       462 ~L~~~g~~V~L~V~R  476 (671)
                      +|+.++..+.|+|..
T Consensus        82 ~l~~~~~~v~l~v~p   96 (98)
T d1rzxa_          82 MMVANSSNLIITVKP   96 (98)
T ss_dssp             HHHHTCTEEEEEEEC
T ss_pred             HHHcCCCeEEEEEEe
Confidence            999999999999853

>d2f0aa1 b.36.1.1 (A:251-342) Segment polarity protein dishevelled homolog Dvl-2 {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Segment polarity protein dishevelled homolog Dvl-2
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=99.50  E-value=2.2e-14  Score=123.60  Aligned_cols=87  Identities=25%  Similarity=0.428  Sum_probs=75.5

Q ss_pred             eEEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhc--
Q psy1156         388 QTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISS--  465 (671)
Q Consensus       388 ~~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~--  465 (671)
                      +.+|+|.+. ..++|||+|.|+.+. .++ .|+||..|.|||||+++|+|++||+|++|||+++.+++|++|+.+|+.  
T Consensus         2 i~tV~l~k~-~~~~lGi~i~gg~~~-~~~-~~i~I~~I~~gg~A~~~G~L~~GD~Il~VNg~~l~~~s~~eav~llk~~~   78 (92)
T d2f0aa1           2 IITVTLNME-KYNFLGISIVGQSNE-RGD-GGIYIGSIMKGGAVAADGRIEPGDMLLQVNDINFENMSNDDAVRVLRDIV   78 (92)
T ss_dssp             EEEEEECHH-HHCSCCEEEECCCCT-TSC-CCEEEEEEBTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHHH
T ss_pred             EEEEEEEeC-CCCccCEEEEccCCC-CCC-CCEEEEEECCCCcHHHcCCCCCccEEEEECCEECCCCCHHHHHHHHHhcc
Confidence            468899884 357999999988753 334 689999999999999999999999999999999999999999999984  


Q ss_pred             -CCCeEEEEEEeC
Q psy1156         466 -GPLNMDLLISRT  477 (671)
Q Consensus       466 -~g~~V~L~V~R~  477 (671)
                       ..+.|.|+|.|.
T Consensus        79 ~~~~~v~L~V~R~   91 (92)
T d2f0aa1          79 HKPGPIVLTVAKL   91 (92)
T ss_dssp             HSSSCEEEEEECC
T ss_pred             CCCCcEEEEEEeC
Confidence             356799999884

>d2cs5a1 b.36.1.1 (A:8-113) Tyrosine-protein phosphatase non-receptor type 4, PTPN4 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Tyrosine-protein phosphatase non-receptor type 4, PTPN4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=1.2e-14  Score=128.30  Aligned_cols=88  Identities=23%  Similarity=0.377  Sum_probs=73.9

Q ss_pred             ceeeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhH-hCCCCCCCEEEEECCeecCCCCHHHHHHHHHhc
Q psy1156         575 TFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAE-DGRLKEGDEILAINGQVCHDLTHLEAISLFKTI  653 (671)
Q Consensus       575 ~~~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAar-aGrLr~GDrILeVNG~sV~~lSheEAV~lLK~s  653 (671)
                      ....|.|.+.. .++|||+|.++.+..   .|+||..|.++|+|++ .|+|++||+||+|||++|.+++|.+|+++|+.+
T Consensus         8 ~~~~v~l~~~~-~g~lG~~l~gg~d~~---~~i~V~~v~~g~~A~~~~g~L~~GD~Il~VNg~~v~~~~~~e~~~ll~~~   83 (106)
T d2cs5a1           8 NLVLIRMKPDE-NGRFGFNVKGGYDQK---MPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIKAS   83 (106)
T ss_dssp             CCEEEEECCCS-SSCCSEEEEEEGGGT---EEEEEEEECSSSTTTSSSSCCCTTCEEEEETTBCTTSSCHHHHHHHHHHH
T ss_pred             cEEEEEEEeCC-CCCccEEEEeeecCC---CCEEEEEEcCCCcchhccCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence            45678888875 478999999887643   5899999999999999 477999999999999999999999999999975


Q ss_pred             C---CCcEEEEEEeCC
Q psy1156         654 K---NGSISLHICRRL  666 (671)
Q Consensus       654 g---~~~VtL~V~Rr~  666 (671)
                      +   ...|.|+|.+..
T Consensus        84 ~~~~~~~v~L~vrp~~   99 (106)
T d2cs5a1          84 CERHSGELMLLVRPNA   99 (106)
T ss_dssp             HHCCSSCEEEEEECCC
T ss_pred             CCCCCcEEEEEECCCC
Confidence            3   235888886543

>d1kwaa_ b.36.1.1 (A:) Cask/Lin-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Cask/Lin-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=4.7e-14  Score=120.42  Aligned_cols=82  Identities=24%  Similarity=0.428  Sum_probs=74.5

Q ss_pred             eEEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhcCC
Q psy1156         388 QTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGP  467 (671)
Q Consensus       388 ~~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~~g  467 (671)
                      .+.|+|.|. ++++|||+|.++..      .++||..|.+||||+++|.|++||+|++|||+++.++++.+++.+|++++
T Consensus         2 ~R~V~l~k~-~~~~lG~~l~~~~~------~~~~I~~v~~gg~A~~~g~l~~GD~Il~INg~~v~~~~~~~~~~ll~~~~   74 (88)
T d1kwaa_           2 SRLVQFQKN-TDEPMGITLKMNEL------NHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMR   74 (88)
T ss_dssp             CEEEEEEEC-SSSCCCEEEECSCG------GGEEEEEECTTSHHHHHTCCCTTCEEEEETTEEGGGSCHHHHHHHHHHCC
T ss_pred             cEEEEEEeC-CCCCccEEEEEcCC------CCEEEEEECCCCHHHHcCCCccCcEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            478999985 57899999986542      68999999999999999999999999999999999999999999999888


Q ss_pred             CeEEEEEEe
Q psy1156         468 LNMDLLISR  476 (671)
Q Consensus       468 ~~V~L~V~R  476 (671)
                      +.|+|+|..
T Consensus        75 ~~v~L~i~p   83 (88)
T d1kwaa_          75 GSITFKIVP   83 (88)
T ss_dssp             EEEEEEEEC
T ss_pred             CcEEEEEEe
Confidence            899999864

>d1y7na1 b.36.1.1 (A:12-90) Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=5.5e-14  Score=117.82  Aligned_cols=75  Identities=25%  Similarity=0.478  Sum_probs=67.3

Q ss_pred             eeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcCCC
Q psy1156         577 HTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKNG  656 (671)
Q Consensus       577 ~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg~~  656 (671)
                      .+|.|.|.....+|||++.++          +|.+|.|+|+|+++| |++||+|++|||+++.+++|++++++|+.++ +
T Consensus         2 ~tv~l~r~~~~~~lGf~i~~g----------~V~~V~~gs~A~~~g-L~~GD~Il~INg~~v~~~~~~~~~~ll~~~~-~   69 (79)
T d1y7na1           2 TTVLIRRPDLRYQLGFSVQNG----------IICSLMRGGIAERGG-VRVGHRIIEINGQSVVATPHEKIVHILSNAV-G   69 (79)
T ss_dssp             EEEEEEESSTTSCCCEEEETT----------EEEEECTTSHHHHHT-CCSSCEEEEETTEECTTSCHHHHHHHHHHCC-E
T ss_pred             EEEEEEcCCCCCCcCEEEECC----------EEEEEcCCCHHHHCC-CCCCCEEEEECCEEeCCCCHHHHHHHHHcCC-C
Confidence            367888876668999999754          899999999999987 9999999999999999999999999999985 7


Q ss_pred             cEEEEEE
Q psy1156         657 SISLHIC  663 (671)
Q Consensus       657 ~VtL~V~  663 (671)
                      .|.|+|.
T Consensus        70 ~v~l~vi   76 (79)
T d1y7na1          70 EIHMKTM   76 (79)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            8999885

>d1ufxa_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=4.3e-14  Score=124.27  Aligned_cols=88  Identities=25%  Similarity=0.289  Sum_probs=74.4

Q ss_pred             eEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcC---
Q psy1156         578 TIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIK---  654 (671)
Q Consensus       578 ~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg---  654 (671)
                      .|.+.|..  .+|||+|.++.+..  ..++||..|.|+|+|+++|+|++||+||+|||++|.+++|++|+++|++++   
T Consensus         9 vv~~~k~~--~~lG~~i~gg~~~~--~~~~~I~~i~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~a~~~~   84 (103)
T d1ufxa_           9 LVRVKKSA--ATLGIAIEGGANTR--QPLPRIVTIQRGGSAHNCGQLKVGHVILEVNGLTLRGKEHREAARIIAEAFKTK   84 (103)
T ss_dssp             EEEEECCS--SSCCEEEECBTTSS--CSSCEEEEECTTSHHHHHCSSCTTCBCCEETTEECTTCBHHHHHHHHHHHHHCS
T ss_pred             EEEEEeCC--CccCEEEeeecCCC--CCCEEEEEEcCCcchhhcCCCCCCCEEEEECCEECCCCcHHHHHHHHHHccCCC
Confidence            46777664  79999999987643  346999999999999999999999999999999999999999999999863   


Q ss_pred             -CCcEEEEEEeCCCCC
Q psy1156         655 -NGSISLHICRRLKSK  669 (671)
Q Consensus       655 -~~~VtL~V~Rr~~~~  669 (671)
                       ...+.|+|.+.....
T Consensus        85 ~~~~~~l~v~~~~sgP  100 (103)
T d1ufxa_          85 DRDYIDFLVTEFNSGP  100 (103)
T ss_dssp             SCSEEEEEECCCCCCT
T ss_pred             ccceEEEEEeCCCCCC
Confidence             246888887765443

>d1uita_ b.36.1.1 (A:) Discs large 5 protein KIAA0583 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Discs large 5 protein KIAA0583
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=8.5e-14  Score=124.86  Aligned_cols=88  Identities=32%  Similarity=0.468  Sum_probs=78.4

Q ss_pred             CCCCeEEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHH
Q psy1156         384 SQEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSII  463 (671)
Q Consensus       384 ~~~~~~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L  463 (671)
                      ...+++.|+|.|..  .+|||+|.++.+      .|+||..|.+||||+++| |++||+|++|||++|.+++|++|+.+|
T Consensus        16 ~~~~~r~v~l~k~~--~glG~~i~gg~~------~gi~V~~V~~gs~A~~~g-L~~GD~Il~INg~~v~~~~~~~~~~~l   86 (117)
T d1uita_          16 YVEEPRHVKVQKGS--EPLGISIVSGEK------GGIYVSKVTVGSIAHQAG-LEYGDQLLEFNGINLRSATEQQARLII   86 (117)
T ss_dssp             CSCCCEEEEEECSS--CCCCEEEEECTT------SCEEEEEECTTSHHHHHT-CCTTCEECEETTEETTTCCHHHHHHHT
T ss_pred             CCCCCEEEEEEeCC--CccCEEEEccCC------CCEEEEEEecCChHHhCC-CCCCCEeeeECCcccCCCCHHHHHHHH
Confidence            34567899998854  789999998764      689999999999999998 999999999999999999999999999


Q ss_pred             hcCCCeEEEEEEeCCcc
Q psy1156         464 SSGPLNMDLLISRTSLK  480 (671)
Q Consensus       464 ~~~g~~V~L~V~R~~~~  480 (671)
                      +.++..|.|+|.+....
T Consensus        87 ~~~~~~v~l~v~~~p~~  103 (117)
T d1uita_          87 GQQCDTITILAQYNPHV  103 (117)
T ss_dssp             TSCCSEEEEEECCCSCC
T ss_pred             HCCCCeEEEEEEECCcc
Confidence            99999999999876543

>d1wf7a_ b.36.1.1 (A:) Enigma homolog ENH {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Enigma homolog ENH
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.49  E-value=2.6e-14  Score=125.60  Aligned_cols=85  Identities=29%  Similarity=0.491  Sum_probs=73.3

Q ss_pred             eeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcCCC
Q psy1156         577 HTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKNG  656 (671)
Q Consensus       577 ~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg~~  656 (671)
                      ..|++...   .+|||+|.++.+..   .++||..|.++++|++.+ |++||+||+|||++|.+++|++|+++|++++ .
T Consensus         7 ~~v~~~g~---~g~Gf~i~gg~d~~---~~v~V~~v~~g~~a~~~~-L~~GD~Il~INg~~v~~~t~~eav~li~~~~-~   78 (103)
T d1wf7a_           7 GSVSLVGP---APWGFRLQGGKDFN---MPLTISSLKDGGKASQAH-VRIGDVVLSIDGISAQGMTHLEAQNKIKACT-G   78 (103)
T ss_dssp             EEEEEESS---SCCSCCEEEETTTT---EEEEECCCCTTCHHHHTT-CCTTCBEEEETTEECSSCCHHHHHHHHHHCS-S
T ss_pred             eEEEEECC---CCccEEEEcccCCC---CCEEEEecCCCChHHHCC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCC-C
Confidence            35666433   68999999998753   589999999999999766 9999999999999999999999999999985 8


Q ss_pred             cEEEEEEeCCCCC
Q psy1156         657 SISLHICRRLKSK  669 (671)
Q Consensus       657 ~VtL~V~Rr~~~~  669 (671)
                      .|.|+|+|+....
T Consensus        79 ~v~L~v~R~~~~~   91 (103)
T d1wf7a_          79 SLNMTLQRASAAA   91 (103)
T ss_dssp             EEEEEECCCSCCC
T ss_pred             eEEEEEEECCCCC
Confidence            9999999887543

>d1x5ra1 b.36.1.1 (A:8-106) Glutamate receptor interacting protein 2, GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein 2, GRIP2 (KIAA1719)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=3.5e-14  Score=123.87  Aligned_cols=89  Identities=25%  Similarity=0.287  Sum_probs=74.9

Q ss_pred             ceeeEEEeeCCCCCcccEEEecCCCCCC-CCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhc
Q psy1156         575 TFHTIVFEKGPGKKGLGFTIVGGKDSPR-GAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTI  653 (671)
Q Consensus       575 ~~~~V~L~K~~g~~~LGfsL~Gg~ds~~-g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~s  653 (671)
                      +...|.|.+.++ .+|||+|.|+.+... ...|+||+.|.++|||+++|+|++||+|++|||++|.+++|++++++|+++
T Consensus         8 e~~~V~l~~~~~-~~lG~~i~gg~~~~~~~~~~~~V~~i~~~s~A~~~G~l~~GD~Il~INg~~v~~~t~~e~~~~lr~~   86 (99)
T d1x5ra1           8 ETTEVVLCGDPL-SGFGLQLQGGIFATETLSSPPLVCFIEPDSPAERCGLLQVGDRVLSINGIATEDGTMEEANQLLRDA   86 (99)
T ss_dssp             EEEEEEECCCTT-TCCCEEEECCSCSSSBCSSCCEEEEECTTSHHHHTSSCCTTCBCSEETTEESTTSBHHHHHHHHHHH
T ss_pred             eeEEEEEEcCCC-CCcCEEEEEeccCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence            455788988873 789999999865432 246899999999999999999999999999999999999999999999976


Q ss_pred             C-CCcEEEEEEe
Q psy1156         654 K-NGSISLHICR  664 (671)
Q Consensus       654 g-~~~VtL~V~R  664 (671)
                      + ...++|.|..
T Consensus        87 ~~~~~l~l~v~~   98 (99)
T d1x5ra1          87 ALAHKVVLEVEF   98 (99)
T ss_dssp             HTTTCEEEEEEE
T ss_pred             CCCCEEEEEEEc
Confidence            4 3457777653

>d1wh1a_ b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1095
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=7.3e-14  Score=126.52  Aligned_cols=91  Identities=33%  Similarity=0.488  Sum_probs=76.4

Q ss_pred             ceeeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcC
Q psy1156         575 TFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIK  654 (671)
Q Consensus       575 ~~~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg  654 (671)
                      .++.|.|.|.....+|||+|.++.+.. ...||||.+|.++|||+++|+|++||+||+|||++|.  ++.+++.+|+...
T Consensus        19 e~~~V~l~k~~~~~~lG~~i~~~~~~~-~~~gi~V~~v~~gg~A~~~g~L~~GD~Il~INg~~v~--~~~~~~~~l~~~~   95 (124)
T d1wh1a_          19 ELEEVDLYRMNSQDKLGLTVCYRTDDE-DDIGIYISEIDPNSIAAKDGRIREGDRIIQINGIEVQ--NREEAVALLTSEE   95 (124)
T ss_dssp             EECCBCCCCSSTTCCCCEEEECCCCCS-SCCCEEEEEECSSSHHHHTCCCCTTCEEEEESSCBCC--SHHHHHHHHTCSS
T ss_pred             eeEEEEEEECCCCCcccEEEEecCCCC-CCCCEEEEEECCCChhhhhcccCCCCEEEEECCEECC--CHHHHHHHHhhCC
Confidence            456788888665679999999886643 3468999999999999999999999999999999998  5778888888765


Q ss_pred             CCcEEEEEEeCCCC
Q psy1156         655 NGSISLHICRRLKS  668 (671)
Q Consensus       655 ~~~VtL~V~Rr~~~  668 (671)
                      ...|.|+|.|+...
T Consensus        96 ~~~v~l~v~r~~~~  109 (124)
T d1wh1a_          96 NKNFSLLIARPELQ  109 (124)
T ss_dssp             CCSCCEEEEECSSC
T ss_pred             CCcEEEEEEeCCCc
Confidence            57899999887653

>d1wi2a_ b.36.1.1 (A:) PDZ domain containing protein 11, Pdzk11 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: PDZ domain containing protein 11, Pdzk11
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.48  E-value=7.4e-14  Score=122.75  Aligned_cols=85  Identities=19%  Similarity=0.329  Sum_probs=75.0

Q ss_pred             CCeEEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhc
Q psy1156         386 EGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISS  465 (671)
Q Consensus       386 ~~~~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~  465 (671)
                      ..+++|+|.|. ++++|||+|.++.+..    .|+||..|.++|||+++| |++||+|++|||++|.+++|++++.+|+.
T Consensus        14 ~~pr~V~l~r~-~~~~lGf~i~gg~~~~----~gi~V~~V~~~s~A~~~G-L~~GD~Il~VNg~~v~~~~~~ev~~llk~   87 (104)
T d1wi2a_          14 FLPRIVTLKKP-PGAQLGFNIRGGKASQ----LGIFISKVIPDSDAHRAG-LQEGDQVLAVNDVDFQDIEHSKAVEILKT   87 (104)
T ss_dssp             SCCEEEEECCC-TTCCCSEEEECCSSSC----CCCEEEEECTTSHHHHHT-CCTTCEEEEETTEECSSCCHHHHHHHHHH
T ss_pred             CcCEEEEEEeC-CCCCcceEEEccccCC----CCEEEEEECCCChhHhcc-cccCCEEEEECCEECCCCCHHHHHHHHhc
Confidence            34588999885 4689999999887654    789999999999999999 99999999999999999999999999997


Q ss_pred             CCCeEEEEEEeC
Q psy1156         466 GPLNMDLLISRT  477 (671)
Q Consensus       466 ~g~~V~L~V~R~  477 (671)
                      +. .+.|+|.+.
T Consensus        88 ~~-~v~l~V~~~   98 (104)
T d1wi2a_          88 AR-EISMRVRFF   98 (104)
T ss_dssp             SS-SEEEEEECC
T ss_pred             CC-eEEEEEEEC
Confidence            64 689998663

>d1x6da1 b.36.1.2 (A:8-114) Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Interleukin 16
domain: Interleukin 16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=4.8e-14  Score=124.44  Aligned_cols=88  Identities=25%  Similarity=0.402  Sum_probs=75.8

Q ss_pred             CCCeEEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHh
Q psy1156         385 QEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIIS  464 (671)
Q Consensus       385 ~~~~~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~  464 (671)
                      ..+++.|.|.|. .+++|||+|.+|.+..  . .++||..|.+||||+++|.|++||+|++|||+.+.+++|++|+.+|+
T Consensus         6 ~~~~~~v~l~k~-~~~~lG~~i~gg~~~~--~-~~i~V~~v~~gs~A~~~g~L~~GD~Il~VNg~~v~~~~~~ea~~~l~   81 (107)
T d1x6da1           6 LDGIHVTILHKE-EGAGLGFSLAGGADLE--N-KVITVHRVFPNGLASQEGTIQKGNEVLSINGKSLKGTTHHDALAILR   81 (107)
T ss_dssp             CTTEEEEEEECC-TTSCCSEEEECCSSSS--C-SSCEEEEECSSSHHHHHTSSCTTCBCCEETTEECSSCCHHHHHHHHH
T ss_pred             cCCcEEEEEEcC-CCCccCEEEeeccCCC--C-CCEEEEEECCCCHHHHcCCCCcCCEEEEECCEecCCCCHHHHHHHHH
Confidence            357788998885 4789999999886542  2 68999999999999999999999999999999999999999999999


Q ss_pred             cCCCeEEEEEEe
Q psy1156         465 SGPLNMDLLISR  476 (671)
Q Consensus       465 ~~g~~V~L~V~R  476 (671)
                      .++..+.+++.+
T Consensus        82 ~~~~~~~l~v~~   93 (107)
T d1x6da1          82 QAREPRQAVIVT   93 (107)
T ss_dssp             HTTSSSEEEEEE
T ss_pred             cCCCCEEEEEEE
Confidence            877666666654

>d1qaua_ b.36.1.1 (A:) Neuronal nitric oxide synthase, NNOS {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Neuronal nitric oxide synthase, NNOS
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.48  E-value=7.3e-14  Score=123.67  Aligned_cols=83  Identities=22%  Similarity=0.372  Sum_probs=72.1

Q ss_pred             CeEEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhcC
Q psy1156         387 GQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSG  466 (671)
Q Consensus       387 ~~~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~~  466 (671)
                      .+++|+|.|. ..++|||+|.++.+.     .++||..|.+||||+++|+|++||+|++|||+.+.+++|++++.+|+.+
T Consensus         1 ~i~~V~l~k~-~~~glG~~i~~~~~~-----~~i~I~~v~~ggpA~~~G~L~~GD~Il~INg~~v~~~s~~e~~~~l~~~   74 (112)
T d1qaua_           1 NVISVRLFKR-KVGGLGFLVKERVSK-----PPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGI   74 (112)
T ss_dssp             CEEEEEEECB-TTTBTSEEEEECSSS-----SCEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTSCHHHHHHHHHHS
T ss_pred             CeEEEEEEEC-CCCcEeEEEEeecCC-----CCEEEEEEcCCCHHHHhhhcccccEeEEECCcCccCCCHHHHHHHHHcC
Confidence            3678999985 468999999987654     7899999999999999999999999999999999999999999999977


Q ss_pred             CCeEEEEEE
Q psy1156         467 PLNMDLLIS  475 (671)
Q Consensus       467 g~~V~L~V~  475 (671)
                      ...+.+.+.
T Consensus        75 ~~~~~~~l~   83 (112)
T d1qaua_          75 ASETHVVLI   83 (112)
T ss_dssp             CSSSEEEEE
T ss_pred             CCCcEEEEE
Confidence            655444443

>d1uf1a_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=2e-13  Score=124.37  Aligned_cols=88  Identities=22%  Similarity=0.298  Sum_probs=77.3

Q ss_pred             CCeEEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhc
Q psy1156         386 EGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISS  465 (671)
Q Consensus       386 ~~~~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~  465 (671)
                      ...+.|+|.+. .+++|||+|.||.+..    .|+||..|.+|+||+++| |++||+|++|||+.|.+++|++|+.+|+.
T Consensus        19 ~~~~~v~l~~~-~~~~lGf~i~gg~~~~----~gv~V~~V~~g~~A~~~g-L~~GD~Il~INg~~v~~~s~~evv~~lr~   92 (128)
T d1uf1a_          19 GDEKKVNLVLG-DGRSLGLTIRGGAEYG----LGIYITGVDPGSEAEGSG-LKVGDQILEVNGRSFLNILHDEAVRLLKS   92 (128)
T ss_dssp             SSEEEEEEECC-SSCCCCEEEECCTTTT----CCCEEEEECTTCHHHHHT-CCTTCEEEEETTEECSSCCHHHHHHHHTT
T ss_pred             CCeEEEEEEEC-CCCccCEEEEeeccCC----CCEEEEEECCCChHHhcC-CCCCCEEEEECCEECCCCCHHHHHHHHhc
Confidence            45588999886 4689999999987654    789999999999999999 99999999999999999999999999996


Q ss_pred             CCCeEEEEEEeCCcc
Q psy1156         466 GPLNMDLLISRTSLK  480 (671)
Q Consensus       466 ~g~~V~L~V~R~~~~  480 (671)
                      + ..+.|+|.+....
T Consensus        93 ~-~~v~l~v~~~~~~  106 (128)
T d1uf1a_          93 S-RHLILTVKDVGRL  106 (128)
T ss_dssp             C-SEEEEEEECCSCC
T ss_pred             C-CcEEEEEEECCcC
Confidence            5 5789999876543

>d1v62a_ b.36.1.1 (A:) Glutamate receptor interacting protein 2, GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein 2, GRIP2 (KIAA1719)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=1.4e-13  Score=123.43  Aligned_cols=91  Identities=20%  Similarity=0.348  Sum_probs=79.9

Q ss_pred             CCCeEEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHh
Q psy1156         385 QEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIIS  464 (671)
Q Consensus       385 ~~~~~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~  464 (671)
                      ..+++.|+|.|. ++++|||+|.++....  . .++||..|.++|+|+++|.|++||+|++|||++|.+++|++++.+|+
T Consensus        13 ~~~p~~V~l~k~-~~~~lGi~i~~~~~~~--~-~gi~V~~I~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~~v~~~l~   88 (117)
T d1v62a_          13 ASGPLMVEIVKT-PGSALGISLTTTSLRN--K-SVITIDRIKPASVVDRSGALHPGDHILSIDGTSMEHCSLLEATKLLA   88 (117)
T ss_dssp             SSSSEEEEEECC-TTCCCCCEEEEECCSS--S-CEEEEEECCTTSHHHHHTCCCTTCBEEEETTEETTSCCHHHHHHHHH
T ss_pred             CCCCEEEEEEcC-CCCCcCEEEEeeccCC--C-CCEEEEEECCCCHHHHcCCCChhheeeeECCEecCCCCHHHHHHHHH
Confidence            345688999885 4679999999876532  2 78999999999999999999999999999999999999999999999


Q ss_pred             cCCCeEEEEEEeCCc
Q psy1156         465 SGPLNMDLLISRTSL  479 (671)
Q Consensus       465 ~~g~~V~L~V~R~~~  479 (671)
                      +++..|.|+|.+...
T Consensus        89 ~~~~~v~l~v~~~~~  103 (117)
T d1v62a_          89 SISEKVRLEILPVPQ  103 (117)
T ss_dssp             SCSSEEEEEECCBTT
T ss_pred             cCCCcEEEEEEECCC
Confidence            999999999987544

>d1uewa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=1.5e-13  Score=122.26  Aligned_cols=93  Identities=25%  Similarity=0.335  Sum_probs=80.2

Q ss_pred             CCeEEEEEEeCCCCCcccEEEeeecCCCCC---CcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHH
Q psy1156         386 EGQTMVRVNRRDFNEELGIYIAKIKNSSEG---NIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSI  462 (671)
Q Consensus       386 ~~~~~V~L~k~~~~~~LGfsI~gg~~~~~g---~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~  462 (671)
                      .....|.|.|. +.++|||+|.++......   ...++||..|.+||||+++|.|++||+|++|||+.|.++++++++.+
T Consensus         9 ~~~~~V~l~r~-~~~~lGf~l~~g~~~~~~~~~~~~~~~I~~I~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~ev~~l   87 (114)
T d1uewa_           9 LQTSDVVIHRK-ENEGFGFVIISSLNRPESGSTITVPHKIGRIIDGSPADRCAKLKVGDRILAVNGQSIINMPHADIVKL   87 (114)
T ss_dssp             CCCEEEEEECC-TTSCCCEEEECCCCSCCSSCCSCCSCEEEEECTTCTTGGGSSCCTTCBEEEETTBCTTTSCHHHHHHH
T ss_pred             ceeEEEEEEeC-CCCCCCEEEeeecccCCCCccCcCCEEEEEECCCCHHHhhccCCcCcEEeEeCCcccCCCcHHHHHHH
Confidence            35678999884 468999999987654321   13579999999999999999999999999999999999999999999


Q ss_pred             HhcCCCeEEEEEEeCCc
Q psy1156         463 ISSGPLNMDLLISRTSL  479 (671)
Q Consensus       463 L~~~g~~V~L~V~R~~~  479 (671)
                      |+.++..|+|+|.|...
T Consensus        88 l~~~~~~v~l~V~r~~~  104 (114)
T d1uewa_          88 IKDAGLSVTLRIIPQEE  104 (114)
T ss_dssp             HHHTTTEEEEEECCCSC
T ss_pred             HHcCCCeEEEEEEeCCC
Confidence            99889999999988654

>d2cssa1 b.36.1.1 (A:8-115) Regulating synaptic membrane exocytosis protein 1, RIMS1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Regulating synaptic membrane exocytosis protein 1, RIMS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=1.2e-13  Score=122.29  Aligned_cols=80  Identities=29%  Similarity=0.440  Sum_probs=71.3

Q ss_pred             CCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhcC--CCeEEEEE
Q psy1156         397 DFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSG--PLNMDLLI  474 (671)
Q Consensus       397 ~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~~--g~~V~L~V  474 (671)
                      +.+++|||+|.||.+...++ .|+||..|.+||||+++|.|++||+|++|||+++.+++|++|+.+|+.+  +..+.|+|
T Consensus        27 ~~~~~lG~~i~gg~~~~~~~-~gi~V~~v~~gg~A~~~g~L~~GD~Il~VNg~~~~~~t~~ea~~~l~~~~~~~~v~l~v  105 (108)
T d2cssa1          27 DSGALLGLKVVGGKMTDLGR-LGAFITKVKKGSLADVVGHLRAGDEVLEWNGKPLPGATNEEVYNIILESKSEPQVEIIV  105 (108)
T ss_dssp             SCSSCSSEEEEEEEECTTSS-EEEEEEEECTTSHHHHTSCCCTTCEEEEESSCBCTTSCHHHHHHHHHHGGGCSCEEEEE
T ss_pred             CCCCCcCEEEeccCCCCCCC-cCEEEEEECCCCchhhcCCCCcCCEEEEECCEECCCCCHHHHHHHHHhCCCCCEEEEEE
Confidence            35689999999998766555 7999999999999999999999999999999999999999999999854  56799999


Q ss_pred             EeC
Q psy1156         475 SRT  477 (671)
Q Consensus       475 ~R~  477 (671)
                      .|+
T Consensus       106 ~RP  108 (108)
T d2cssa1         106 SRP  108 (108)
T ss_dssp             EEC
T ss_pred             eCc
Confidence            874

>d1ueqa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=2.6e-13  Score=122.86  Aligned_cols=89  Identities=18%  Similarity=0.245  Sum_probs=78.2

Q ss_pred             CCCeEEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHh
Q psy1156         385 QEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIIS  464 (671)
Q Consensus       385 ~~~~~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~  464 (671)
                      ....+.|+|.|..  .+|||+|.++.+..    .++||..|.++++|+++|.|++||+|++|||+.|.+++|.+|+.+|+
T Consensus        17 ~~~~~~v~l~k~~--~glG~~i~gg~~~~----~~i~I~~v~~gg~A~~~g~L~~GD~Il~INg~~v~~~t~~eav~~l~   90 (123)
T d1ueqa_          17 KGTFLSTTLKKSN--MGFGFTIIGGDEPD----EFLQVKSVIPDGPAAQDGKMETGDVIVYINEVCVLGHTHADVVKLFQ   90 (123)
T ss_dssp             CSEEEEEEEECCT--TSCSEEEECCSSSS----CCCEEEEECTTSHHHHTSCCCTTCEEEEETTEECTTSCHHHHHHHHH
T ss_pred             CCeEEEEEEEECC--CeeCEEEEeecCCC----CCEEEEEECCCCHHHHcCCCeeCCEEEEECCEECCCCCHHHHHHHHH
Confidence            4566788887753  78999999987643    68999999999999999999999999999999999999999999999


Q ss_pred             cC--CCeEEEEEEeCCc
Q psy1156         465 SG--PLNMDLLISRTSL  479 (671)
Q Consensus       465 ~~--g~~V~L~V~R~~~  479 (671)
                      .+  +..|.|+|.|...
T Consensus        91 ~~~~g~~v~L~v~R~~~  107 (123)
T d1ueqa_          91 SVPIGQSVNLVLCRGYP  107 (123)
T ss_dssp             TSCTTCEEEEEEEESCC
T ss_pred             cCCCCCEEEEEEEcCCC
Confidence            65  5789999999644

>d2f5ya1 b.36.1.1 (A:19-95) Regulator of G-protein signaling 3, RGS3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Regulator of G-protein signaling 3, RGS3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=1.7e-13  Score=114.25  Aligned_cols=76  Identities=25%  Similarity=0.343  Sum_probs=69.4

Q ss_pred             EEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhcCCCeE
Q psy1156         391 VRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLNM  470 (671)
Q Consensus       391 V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~~g~~V  470 (671)
                      |+|.|..  ++|||++.++        .++||..|.+||||+++| |++||+|++|||+++.+++|.+++.++++++..+
T Consensus         1 v~l~r~~--~g~Gf~l~~~--------~~~~V~~V~~gspA~~aG-L~~GD~Il~Vng~~v~~~~~~~v~~~i~~~~~~v   69 (77)
T d2f5ya1           1 ITIPRGK--DGFGFTICCD--------SPVRVQAVDSGGPAERAG-LQQLDTVLQLNERPVEHWKCVELAHEIRSCPSEI   69 (77)
T ss_dssp             EEEECBT--TBTSEEEECS--------SSCEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHTCSSEE
T ss_pred             CEEecCC--CcccEEEECC--------CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHCCCCEE
Confidence            5677754  6899999853        579999999999999999 9999999999999999999999999999999999


Q ss_pred             EEEEEeC
Q psy1156         471 DLLISRT  477 (671)
Q Consensus       471 ~L~V~R~  477 (671)
                      +|+|.|.
T Consensus        70 ~L~v~R~   76 (77)
T d2f5ya1          70 ILLVWRM   76 (77)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEEE
Confidence            9999884

>d1ueza_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=7.4e-14  Score=122.24  Aligned_cols=89  Identities=28%  Similarity=0.396  Sum_probs=77.5

Q ss_pred             CCCeEEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHh
Q psy1156         385 QEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIIS  464 (671)
Q Consensus       385 ~~~~~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~  464 (671)
                      ..+++.|+|.+....++|||+|.++.+..    .++||..|.+++||+++| |++||+|++|||++|.++++.+++.+|+
T Consensus         6 ~~~~~~v~l~r~~~~~glG~~i~gg~~~~----~~i~V~~v~~gg~A~~~g-L~~GD~Il~ING~~v~~~~~~~v~~ll~   80 (101)
T d1ueza_           6 SGEVRLVSLRRAKAHEGLGFSIRGGSEHG----VGIYVSLVEPGSLAEKEG-LRVGDQILRVNDKSLARVTHAEAVKALK   80 (101)
T ss_dssp             SCCCEEECCCCCCTTTCSSEEEEECTTTT----CCEEEEEECTTSHHHHHT-CCSSCCEEEETTEECSSCCHHHHHHHSS
T ss_pred             CCCEEEEEEEECCCCCeeCEEEEecccCC----CCEEEEEECCCChHHhcC-CCCCcEEEEECCEECCCCCHHHHHHHHh
Confidence            45678999998766679999999987654    689999999999999999 9999999999999999999999999999


Q ss_pred             cCCCeEEEEEEeCCc
Q psy1156         465 SGPLNMDLLISRTSL  479 (671)
Q Consensus       465 ~~g~~V~L~V~R~~~  479 (671)
                      ..+ .+.|+|.+...
T Consensus        81 ~~~-~~~l~V~~~~~   94 (101)
T d1ueza_          81 GSK-KLVLSVYSAGR   94 (101)
T ss_dssp             SSS-SCCEEECCCCC
T ss_pred             cCC-CEEEEEEECCC
Confidence            765 56788876553

>d1wfva_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=3.6e-14  Score=124.70  Aligned_cols=89  Identities=25%  Similarity=0.373  Sum_probs=80.2

Q ss_pred             CCCeEEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHh
Q psy1156         385 QEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIIS  464 (671)
Q Consensus       385 ~~~~~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~  464 (671)
                      ..+.++|+|.|..  .+|||+|.++.+..    .+++|..|.+++||+++|.|++||+|++|||+.+.+++|.+++.+|+
T Consensus         9 ~~e~~~v~l~k~~--~glG~~i~gg~~~~----~~i~I~~v~~gg~A~~~g~L~~GD~Il~INg~~v~~~s~~ev~~~l~   82 (103)
T d1wfva_           9 DFDYFTVDMEKGA--KGFGFSIRGGREYK----MDLYVLRLAEDGPAIRNGRMRVGDQIIEINGESTRDMTHARAIELIK   82 (103)
T ss_dssp             CSCCEECCEECCT--TSSSBCCEEETTTT----EEEECCCBCTTSHHHHHCSSCTTCEEEEETTEECSSCCHHHHHHHHH
T ss_pred             CceEEEEEEEeCC--CccCEEEEeeccCC----CCEEEEEEcCCChHHhcCCCCCCCEEEEECCEECCCCcHHHHHHHHH
Confidence            4577889998854  68999999988654    68999999999999999999999999999999999999999999999


Q ss_pred             cCCCeEEEEEEeCCc
Q psy1156         465 SGPLNMDLLISRTSL  479 (671)
Q Consensus       465 ~~g~~V~L~V~R~~~  479 (671)
                      .++..|.|+|.|...
T Consensus        83 ~~~~~v~l~v~R~~~   97 (103)
T d1wfva_          83 SGGRRVRLLLKRGTG   97 (103)
T ss_dssp             HHCSEECEEEECTTC
T ss_pred             cCCCEEEEEEEECCC
Confidence            888999999998654

>d1q3oa_ b.36.1.1 (A:) Shank1, PDZ domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Shank1, PDZ domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.44  E-value=3.4e-13  Score=117.93  Aligned_cols=88  Identities=22%  Similarity=0.309  Sum_probs=75.9

Q ss_pred             eEEEEEEeCCCCCcccEEEeeecCCCC--------CCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHH
Q psy1156         388 QTMVRVNRRDFNEELGIYIAKIKNSSE--------GNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQA  459 (671)
Q Consensus       388 ~~~V~L~k~~~~~~LGfsI~gg~~~~~--------g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~a  459 (671)
                      .++|.|.|. ..++|||.+.++.....        ....+++|..|.+||||+++| |++||+|++|||++|.+++|.++
T Consensus         6 ~~tV~l~r~-~~~~fGf~l~g~~~~~~~~~~~~~~~~~~~~~I~~v~~g~~A~~aG-L~~GD~Il~INg~~v~~~~h~ev   83 (104)
T d1q3oa_           6 EKTVLLQKK-DSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAG-LRMGDFLIEVNGQNVVKVGHRQV   83 (104)
T ss_dssp             EEEEEEECC-TTSCCSEEEEESSCCCTTSCCCCCSSCCSSEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHH
T ss_pred             eEEEEEEEC-CCCccCEEEEeecccCccccccccccCCCCEEEEEECCCCHHHHcC-CCCCCEEEEEcCeEcCCCCHHHH
Confidence            468899885 46899999998765331        112468999999999999999 99999999999999999999999


Q ss_pred             HHHHhcCCCeEEEEEEeC
Q psy1156         460 KSIISSGPLNMDLLISRT  477 (671)
Q Consensus       460 v~~L~~~g~~V~L~V~R~  477 (671)
                      +.+|+.++..|+|+|.+.
T Consensus        84 v~~ik~~~~~v~L~V~~~  101 (104)
T d1q3oa_          84 VNMIRQGGNTLMVKVVMV  101 (104)
T ss_dssp             HHHHHHTTTEEEEEEEEE
T ss_pred             HHHHHcCCCeEEEEEEec
Confidence            999999999999999863

>d1wi4a1 b.36.1.1 (A:8-103) Syntaxin binding protein 4 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntaxin binding protein 4
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.43  E-value=2.8e-13  Score=117.39  Aligned_cols=87  Identities=26%  Similarity=0.444  Sum_probs=72.7

Q ss_pred             CCCeEEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHh
Q psy1156         385 QEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIIS  464 (671)
Q Consensus       385 ~~~~~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~  464 (671)
                      ...+++|++.+.   .+|||+|.+|.+...+  .++||..|.+||||+++|+|++||+|++|||+++.+++|++|+.+|+
T Consensus         6 ~~~~~~v~~~~~---~glG~~i~gg~~~~~~--~~i~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~ea~~~l~   80 (96)
T d1wi4a1           6 DPAFRVITVTKE---TGLGLKILGGINRNEG--PLVYIHEVIPGGDCYKDGRLKPGDQLVSINKESMIGVSFEEAKSIIT   80 (96)
T ss_dssp             CTTEEEEEECCS---SCCCEEEEECSSSSSC--SSEEEEEECTTSHHHHHCSCCTTCBEEEETTSCCTTCCHHHHHHHHH
T ss_pred             CCcEEEEEecCC---CccCEEEEeccCCCCC--CCEEEEEEeCCCccccCCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            345677777553   5799999998764322  57999999999999999999999999999999999999999999999


Q ss_pred             cC----CCeEEEEEEe
Q psy1156         465 SG----PLNMDLLISR  476 (671)
Q Consensus       465 ~~----g~~V~L~V~R  476 (671)
                      .+    ...+.|.+.|
T Consensus        81 ~~~~~~~~~vel~~~R   96 (96)
T d1wi4a1          81 RAKLRSESPWEIAFIR   96 (96)
T ss_dssp             HSCCSSSSCEEEEEEC
T ss_pred             hccCCCCCeEEEEEEC
Confidence            54    4668887765

>d1ujda_ b.36.1.1 (A:) Hypothetical protein KIAA0559 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA0559
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=3.8e-13  Score=120.64  Aligned_cols=91  Identities=26%  Similarity=0.312  Sum_probs=76.1

Q ss_pred             EEEEEEeCC-----CCCcccEEEeeecCCCCCC-cCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHH
Q psy1156         389 TMVRVNRRD-----FNEELGIYIAKIKNSSEGN-IGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSI  462 (671)
Q Consensus       389 ~~V~L~k~~-----~~~~LGfsI~gg~~~~~g~-~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~  462 (671)
                      ..|+|.+..     .+.+|||.|.++.+..... ..|+||..|.++|||+++|+|++||+|++|||++|.+++|++|+.+
T Consensus        14 ~~v~l~r~~~~~~~~g~glG~~i~gg~~~~~~~~~~gi~I~~V~~gs~A~~~G~L~~GD~Il~INg~~v~~~s~~e~~~~   93 (117)
T d1ujda_          14 ARIKITRDSKDHTVSGNGLGIRIVGGKEIPGHSGEIGAYIAKILPGGSAEQTGKLMEGMQVLEWNGIPLTSKTYEEVQSI   93 (117)
T ss_dssp             EEEEECCCSSSSCSSCCSCSEEEEEEEECSSSSSCEEEEEEEECTTCHHHHHSSCCTTCEEEEETTEECTTCCHHHHHHH
T ss_pred             eeEEEEecccccccCCcccCEEEeccccCCCCCCCcCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCcHHHHHHH
Confidence            456665522     2467999999987654221 2589999999999999999999999999999999999999999999


Q ss_pred             HhcCCCeEEEEEEeCCc
Q psy1156         463 ISSGPLNMDLLISRTSL  479 (671)
Q Consensus       463 L~~~g~~V~L~V~R~~~  479 (671)
                      |++++..|.|+|.|...
T Consensus        94 i~~~~~~v~l~v~r~~~  110 (117)
T d1ujda_          94 ISQQSGEAEICVRLDLN  110 (117)
T ss_dssp             HSCCSSCEEEEEESSCC
T ss_pred             HHcCCCeEEEEEEECCC
Confidence            99988899999988543

>d2csja1 b.36.1.1 (A:8-111) Tight junction protein ZO-2, Tjp2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Tight junction protein ZO-2, Tjp2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.42  E-value=2e-13  Score=119.92  Aligned_cols=90  Identities=17%  Similarity=0.261  Sum_probs=77.1

Q ss_pred             CeEEEEEEeCCCCCcccEEEeeecCCCCC--CcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHh
Q psy1156         387 GQTMVRVNRRDFNEELGIYIAKIKNSSEG--NIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIIS  464 (671)
Q Consensus       387 ~~~~V~L~k~~~~~~LGfsI~gg~~~~~g--~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~  464 (671)
                      +.++|.|.|. +.++|||+|.++.+....  ...++||..|.+||||+ ++ |++||+|++|||+++.+++|.+++.+|+
T Consensus         7 e~~tV~l~k~-~~~~~G~~i~gg~~~~~~~~~~~~i~V~~v~~gs~A~-~~-L~~GD~Il~INg~~v~~~~~~ev~~ll~   83 (104)
T d2csja1           7 EQYTVTLQKD-SKRGFGIAVSGGRDNPHFENGETSIVISDVLPGGPAD-GL-LQENDRVVMVNGTPMEDVLHSFAVQQLR   83 (104)
T ss_dssp             EEEEEEEECC-SSSTTCEEEECCSSCCCCSSCCCBCEEEEECTTSSHH-HH-BCTTCEEEEESSCBCBTCCHHHHHHHHH
T ss_pred             ccEEEEEEeC-CCCCcCEEEEcccCCCccccCCCCEEEEEECCCChhh-cC-CCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            4578999885 468999999988764422  13689999999999997 56 9999999999999999999999999999


Q ss_pred             cCCCeEEEEEEeCCc
Q psy1156         465 SGPLNMDLLISRTSL  479 (671)
Q Consensus       465 ~~g~~V~L~V~R~~~  479 (671)
                      .++..+.|+|.|...
T Consensus        84 ~~~~~v~l~V~R~~~   98 (104)
T d2csja1          84 KSGKIAAIVVKRPRK   98 (104)
T ss_dssp             HSCSEEEEEEEEEEE
T ss_pred             cCCCEEEEEEEeCCC
Confidence            889999999998644

>d1uepa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=1.5e-13  Score=120.48  Aligned_cols=84  Identities=20%  Similarity=0.344  Sum_probs=72.7

Q ss_pred             EEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhcC--
Q psy1156         389 TMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSG--  466 (671)
Q Consensus       389 ~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~~--  466 (671)
                      +.|+|.|.  ..+|||+|.++.+..    .++||..|.+++||+++|+|++||+|++|||++|.+++|++|+.+|+.+  
T Consensus        11 ~~V~l~k~--~~glG~~i~gg~~~~----~~i~V~~v~~g~~A~~~G~L~~GD~Il~VNg~~v~~~t~~e~~~~l~~~~~   84 (103)
T d1uepa_          11 LDVHLRRM--ESGFGFRILGGDEPG----QPILIGAVIAMGSADRDGRLHPGDELVYVDGIPVAGKTHRYVIDLMHHAAR   84 (103)
T ss_dssp             ECCEEESS--SSSCCEEECCCCSTT----SCCBEEEECTTSTTGGGTCCCTTCEEEEETTEECTTSCHHHHHHHHHHHHH
T ss_pred             EEEEEEeC--CceEeEEEEecccCC----CcEEEEEECCCChHHHcCCCCcCCEEEEECCEECCCCCHHHHHHHHHhCCC
Confidence            45777664  368999999877644    6799999999999999999999999999999999999999999999965  


Q ss_pred             CCeEEEEEEeCC
Q psy1156         467 PLNMDLLISRTS  478 (671)
Q Consensus       467 g~~V~L~V~R~~  478 (671)
                      ...|.|+|.|..
T Consensus        85 ~~~v~l~v~r~~   96 (103)
T d1uepa_          85 NGQVNLTVRRKV   96 (103)
T ss_dssp             HTEEEEEEEEEC
T ss_pred             CCEEEEEEEeCC
Confidence            457999998843

>d1wifa_ b.36.1.1 (A:) hypothetical PDZ domain containing protein Uqcrc2 (4930408O21Rik) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: hypothetical PDZ domain containing protein Uqcrc2 (4930408O21Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.42  E-value=8.8e-14  Score=126.57  Aligned_cols=84  Identities=21%  Similarity=0.368  Sum_probs=74.0

Q ss_pred             ceeeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcC
Q psy1156         575 TFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIK  654 (671)
Q Consensus       575 ~~~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg  654 (671)
                      ....|.|.++.  .+|||.|....      .+++|.+|.++|+|+++|+|++||+||+|||++|.+++|++|+++|+.++
T Consensus        27 ~~~~v~l~~g~--~GlG~~i~~~~------~~i~V~~v~~gg~A~~~G~l~~GD~Il~Ing~~v~~~~~~e~~~llr~~~   98 (126)
T d1wifa_          27 KVIQTKLTVGN--LGLGLVVIQNG------PYLQISHLINKGAAASDGILQPGDVLISVGHANVLGYTLREFLKLLQNIT   98 (126)
T ss_dssp             CEEEEEEECCT--TCCCCCEEEET------TEEEECCCCTTSSGGGCSSSCTTCBEEEESSSCCTTCCHHHHHHHHTSCC
T ss_pred             cEEEEEEeeCC--CcEEEEEEecC------CcEEEEEECCCChHHHcCCCCCCCEEEEECCEEeEeccHHHHHHHHhCCC
Confidence            45677888876  78999998653      37999999999999999999999999999999999999999999999875


Q ss_pred             -CCcEEEEEEeCC
Q psy1156         655 -NGSISLHICRRL  666 (671)
Q Consensus       655 -~~~VtL~V~Rr~  666 (671)
                       ...|+|+|.|..
T Consensus        99 ~g~~v~L~v~R~~  111 (126)
T d1wifa_          99 IGTVLQIKAYRGF  111 (126)
T ss_dssp             SSCEEEEEEESSS
T ss_pred             CCCEEEEEEEeCC
Confidence             358999999975

>d2h3la1 b.36.1.1 (A:1310-1412) Erbin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Erbin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=4.7e-13  Score=117.50  Aligned_cols=86  Identities=28%  Similarity=0.383  Sum_probs=71.2

Q ss_pred             EEEEEEeCCCCCcccEEEeeecCCCCC----CcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHh
Q psy1156         389 TMVRVNRRDFNEELGIYIAKIKNSSEG----NIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIIS  464 (671)
Q Consensus       389 ~~V~L~k~~~~~~LGfsI~gg~~~~~g----~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~  464 (671)
                      ..|.|.+.+ +.+|||+|.||.+....    ...||||+.|.++|||++  .|++||+|++|||+++.+++|.+|+.+|+
T Consensus        11 ~~v~v~~~~-~~~lGf~I~Gg~~~~~~~~~~~~~gI~I~~V~~gs~A~~--~L~~GD~Il~VNg~~v~~~t~~eav~~l~   87 (103)
T d2h3la1          11 QEIRVRVEK-DPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK--LLQPGDKIIQANGYSFINIEHGQAVSLLK   87 (103)
T ss_dssp             EEEEEEEEC-SSSCSEEEEETTTTCCCSSSTTCCSEEEEEECTTSTTTT--TCCTTCEEEEETTEECSSCCHHHHHHHHH
T ss_pred             EEEEEEEcc-CCCCCEEEeeecCCCCCccccCCCCEEEEEeCCCChHHh--ccCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            344554432 47899999998654311    126899999999999975  49999999999999999999999999999


Q ss_pred             cCCCeEEEEEEeC
Q psy1156         465 SGPLNMDLLISRT  477 (671)
Q Consensus       465 ~~g~~V~L~V~R~  477 (671)
                      .++..++|+|.|.
T Consensus        88 ~~~~~v~L~V~R~  100 (103)
T d2h3la1          88 TFQNTVELIIVRE  100 (103)
T ss_dssp             HCCSEEEEEEEEE
T ss_pred             hCCCeEEEEEEEE
Confidence            9999999999885

>d1vb7a_ b.36.1.1 (A:) PDZ-LIM protein mystique {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: PDZ-LIM protein mystique
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.42  E-value=1.1e-13  Score=119.58  Aligned_cols=82  Identities=26%  Similarity=0.356  Sum_probs=72.8

Q ss_pred             EEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhcCCC
Q psy1156         389 TMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPL  468 (671)
Q Consensus       389 ~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~~g~  468 (671)
                      ++|.+.  . ..+|||+|.++.+..    .++||..|.+++||+++| |++||+|++|||++|.+++|.+++.+|+.++.
T Consensus         8 ~tv~~~--g-~~~~Gf~i~gg~d~~----~~i~V~~v~~gs~A~~~g-L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~   79 (94)
T d1vb7a_           8 LTVDVA--G-PAPWGFRISGGRDFH----TPIIVTKVTERGKAEAAD-LRPGDIIVAINGQSAENMLHAEAQSKIRQSAS   79 (94)
T ss_dssp             EEEEEC--S-SSCCSBCCEEETTTT----EEEECCCBCTTSSHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHTCCS
T ss_pred             EEEEEE--C-CCcCCEEEEeeccCC----CCEEEEeccCCChhhhCC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCC
Confidence            455553  2 479999999988654    689999999999999988 99999999999999999999999999999999


Q ss_pred             eEEEEEEeCC
Q psy1156         469 NMDLLISRTS  478 (671)
Q Consensus       469 ~V~L~V~R~~  478 (671)
                      .|.|+|.|..
T Consensus        80 ~v~L~V~R~~   89 (94)
T d1vb7a_          80 PLRLQLDRSS   89 (94)
T ss_dssp             SEEEEEECCC
T ss_pred             eEEEEEEECC
Confidence            9999999854

>d1va8a1 b.36.1.1 (A:8-107) Maguk p55 subfamily member 5 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Maguk p55 subfamily member 5
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.42  E-value=4.3e-13  Score=117.16  Aligned_cols=82  Identities=27%  Similarity=0.482  Sum_probs=74.5

Q ss_pred             CCeEEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhc
Q psy1156         386 EGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISS  465 (671)
Q Consensus       386 ~~~~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~  465 (671)
                      ..++.|.|.|. .+++|||+|.++.       .++||..|.+||+|+++|.|++||+|++|||+++.++++++++.+|+.
T Consensus        17 ~~i~~V~l~k~-~~~~lG~~v~~~~-------~~i~I~~V~~gs~A~~~g~l~~GD~Il~VNg~~v~~~~~~~~~~ll~~   88 (100)
T d1va8a1          17 ETVKIVRIEKA-RDIPLGATVRNEM-------DSVIISRIVKGGAAEKSGLLHEGDEVLEINGIEIRGKDVNEVFDLLSD   88 (100)
T ss_dssp             EECEEEEEEEC-TTCCCCEEEEECS-------SSEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHH
T ss_pred             ceEEEEEEEeC-CCCCccEEEEecC-------CCEEEEEECCCChhhhhcccCccCEEEEECCEEEcCCCHHHHHHHHHc
Confidence            35688999885 4689999998653       689999999999999999999999999999999999999999999998


Q ss_pred             CCCeEEEEEE
Q psy1156         466 GPLNMDLLIS  475 (671)
Q Consensus       466 ~g~~V~L~V~  475 (671)
                      +++.|+|+|.
T Consensus        89 ~~~~v~L~v~   98 (100)
T d1va8a1          89 MHGTLTFVLI   98 (100)
T ss_dssp             CCEEEEEEEE
T ss_pred             CCCeEEEEEE
Confidence            8889999985

>d1r6ja_ b.36.1.1 (A:) Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntenin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=4.3e-13  Score=113.12  Aligned_cols=78  Identities=22%  Similarity=0.360  Sum_probs=70.3

Q ss_pred             CCeEEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhc
Q psy1156         386 EGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISS  465 (671)
Q Consensus       386 ~~~~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~  465 (671)
                      .++++|+|.|.. .++|||+|.+          | +|..|.+||||+++| |++||+|++|||+++.+++|++++.+|++
T Consensus         3 ~~pr~V~l~k~~-~g~~Gf~i~~----------g-~V~~v~~g~~A~~~G-l~~GD~Il~INg~~v~~~t~~~~~~ll~~   69 (82)
T d1r6ja_           3 MDPRTITMHKDS-TGHVGFIFKN----------G-KITSIVKDSSAARNG-LLTEHNICEINGQNVIGLKDSQIADILST   69 (82)
T ss_dssp             TCCEEEEEECCT-TSCCCEEEET----------T-EEEEECTTSHHHHHT-CCSSEEEEEETTEECTTCCHHHHHHHHHH
T ss_pred             CCCEEEEEEeCC-CCCcCEEEEE----------E-EEEEECCCChHHhcC-cCCCCEEEEeCCeEEeeCCHHHHHHHHHc
Confidence            356899999854 5789999973          3 699999999999999 99999999999999999999999999999


Q ss_pred             CCCeEEEEEEe
Q psy1156         466 GPLNMDLLISR  476 (671)
Q Consensus       466 ~g~~V~L~V~R  476 (671)
                      ++..|+|+|..
T Consensus        70 ~~~~v~l~v~p   80 (82)
T d1r6ja_          70 SGTVVTITIMP   80 (82)
T ss_dssp             SCSEEEEEEEE
T ss_pred             CCCEEEEEEEc
Confidence            99999999963

>d1y7na1 b.36.1.1 (A:12-90) Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=5e-13  Score=111.88  Aligned_cols=76  Identities=26%  Similarity=0.504  Sum_probs=69.1

Q ss_pred             eEEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhcCC
Q psy1156         388 QTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGP  467 (671)
Q Consensus       388 ~~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~~g  467 (671)
                      +.+|.|.+.+...+|||++.+          | +|.+|.|||+|+++| |++||+|++|||+++.+++|++++.+|+.++
T Consensus         1 V~tv~l~r~~~~~~lGf~i~~----------g-~V~~V~~gs~A~~~g-L~~GD~Il~INg~~v~~~~~~~~~~ll~~~~   68 (79)
T d1y7na1           1 VTTVLIRRPDLRYQLGFSVQN----------G-IICSLMRGGIAERGG-VRVGHRIIEINGQSVVATPHEKIVHILSNAV   68 (79)
T ss_dssp             CEEEEEEESSTTSCCCEEEET----------T-EEEEECTTSHHHHHT-CCSSCEEEEETTEECTTSCHHHHHHHHHHCC
T ss_pred             CEEEEEEcCCCCCCcCEEEEC----------C-EEEEEcCCCHHHHCC-CCCCCEEEEECCEEeCCCCHHHHHHHHHcCC
Confidence            357888887778999999973          3 699999999999988 9999999999999999999999999999999


Q ss_pred             CeEEEEEE
Q psy1156         468 LNMDLLIS  475 (671)
Q Consensus       468 ~~V~L~V~  475 (671)
                      +.+.|+|.
T Consensus        69 ~~v~l~vi   76 (79)
T d1y7na1          69 GEIHMKTM   76 (79)
T ss_dssp             EEEEEEEE
T ss_pred             CEEEEEEE
Confidence            99999985

>d1v5la_ b.36.1.1 (A:) Alpha-actinin-2 associated LIM protein {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Alpha-actinin-2 associated LIM protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.40  E-value=7.3e-14  Score=122.80  Aligned_cols=75  Identities=32%  Similarity=0.386  Sum_probs=68.5

Q ss_pred             CcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcCCCcEEEEEEeCCC
Q psy1156         588 KGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKNGSISLHICRRLK  667 (671)
Q Consensus       588 ~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg~~~VtL~V~Rr~~  667 (671)
                      .+|||+|.++.+..   .|+||..|.++++|+++| |++||+||+|||++|.+++|.+|+++|+.++ ..|.|+|.|+..
T Consensus        15 ~~~Gf~l~gg~d~~---~~i~V~~v~~g~~A~~~~-L~~GD~Il~VNg~~v~~~~~~e~v~ll~~~~-~~v~l~V~R~~~   89 (103)
T d1v5la_          15 APWGFRLSGGIDFN---QPLVITRITPGSKAAAAN-LCPGDVILAIDGFGTESMTHADAQDRIKAAS-YQLCLKIDRAET   89 (103)
T ss_dssp             SCCSBCCEEETTTT---EEEECSCBCTTSTTGGGT-CCTTCBEEEETTEECSSCCHHHHHHHHTTCC-SEEECEECCCTT
T ss_pred             CCCCEEEEeecCCC---CCEEEEEccCCChHHhCC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCC-CEEEEEEEECCc
Confidence            78999999988753   589999999999999877 9999999999999999999999999999985 789999998754

>d1w9ea1 b.36.1.1 (A:110-194) Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntenin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=9.6e-13  Score=111.28  Aligned_cols=81  Identities=19%  Similarity=0.390  Sum_probs=71.3

Q ss_pred             CeEEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhcC
Q psy1156         387 GQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSG  466 (671)
Q Consensus       387 ~~~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~~  466 (671)
                      +++.|.|.|. ..++|||++..+.       .|+||..|.+||||+++| |++||+|++|||+.+.++++++++.+|+.+
T Consensus         2 ~pr~v~l~k~-~~~~lG~~l~~~~-------~g~~V~~v~~gspA~~aG-L~~GD~Il~Vng~~v~~~~~~~v~~~lk~~   72 (85)
T d1w9ea1           2 DPREVILCKD-QDGKIGLRLKSID-------NGIFVQLVQANSPASLVG-LRFGDQVLQINGENCAGWSSDKAHKVLKQA   72 (85)
T ss_dssp             CCEEEEEECC-TTSCCSEEEEEET-------TEEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHHHC
T ss_pred             CCEEEEEEeC-CCCCEeEEEEeCC-------CCEEEEEECCCCHHHHcC-CCCccEEEEECCEEeCCCCHHHHHHHHhcC
Confidence            3478899885 4689999998764       689999999999999999 999999999999999999999999999855


Q ss_pred             -CCeEEEEEEe
Q psy1156         467 -PLNMDLLISR  476 (671)
Q Consensus       467 -g~~V~L~V~R  476 (671)
                       +..+.|+|.+
T Consensus        73 ~~~~v~l~v~~   83 (85)
T d1w9ea1          73 FGEKITMTIRD   83 (85)
T ss_dssp             CSSEEEEEEEC
T ss_pred             CCCEEEEEEeC
Confidence             5678888854

>d1v5qa_ b.36.1.1 (A:) Glutamate receptor interacting protein {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.38  E-value=2.8e-13  Score=122.48  Aligned_cols=88  Identities=18%  Similarity=0.269  Sum_probs=73.6

Q ss_pred             CeEEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhcC
Q psy1156         387 GQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSG  466 (671)
Q Consensus       387 ~~~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~~  466 (671)
                      +.+.|.|.+. +..+|||+|.++.........++||..|.++|||+++|.|++||+|++|||+++.+++|++++.+|+.+
T Consensus        15 ~~~ev~l~k~-~~~glGf~i~gg~~~~~~~~~~i~V~~I~~gg~A~~~G~L~~GD~Il~INg~~v~~~~~~e~~~~lk~~   93 (122)
T d1v5qa_          15 ETTEVVLTAD-PVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDS   93 (122)
T ss_dssp             EEEEEEECCC-SSSSSCEEEECCSCCSSSCSSCCEEEEECTTSHHHHSCCCCTTCCEEEETTEESSSSCHHHHHHHHHHH
T ss_pred             eeEEEEEecC-CCCccCEEEecccCCCccCCCCeEEEEECCCCHHHHhCCCCcCCEEEEECCCcCCCCCHHHHHHHHHcC
Confidence            5677888874 567999999998754433237899999999999999999999999999999999999999999999976


Q ss_pred             CCeEEEEEE
Q psy1156         467 PLNMDLLIS  475 (671)
Q Consensus       467 g~~V~L~V~  475 (671)
                      +..+.|+|.
T Consensus        94 ~~~~~l~l~  102 (122)
T d1v5qa_          94 SITSKVTLE  102 (122)
T ss_dssp             TTTTCEEEE
T ss_pred             CCceEEEEE
Confidence            655545444

>d2cs5a1 b.36.1.1 (A:8-113) Tyrosine-protein phosphatase non-receptor type 4, PTPN4 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Tyrosine-protein phosphatase non-receptor type 4, PTPN4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=7.2e-13  Score=116.72  Aligned_cols=88  Identities=18%  Similarity=0.279  Sum_probs=74.7

Q ss_pred             CCCeEEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhc-CCCCCCCEEEccCCeeccCCCHHHHHHHH
Q psy1156         385 QEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKE-GCLELGDEIISVNGQRLRGLTMTQAKSII  463 (671)
Q Consensus       385 ~~~~~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~ra-G~L~~GD~IlaVNG~~V~~~s~~~av~~L  463 (671)
                      ..++++|+|.+. ..++|||+|.++.+..    .++||..|.+||||+++ |.|++||+|++|||+++.+++|.+++.+|
T Consensus         6 ~~~~~~v~l~~~-~~g~lG~~l~gg~d~~----~~i~V~~v~~g~~A~~~~g~L~~GD~Il~VNg~~v~~~~~~e~~~ll   80 (106)
T d2cs5a1           6 HDNLVLIRMKPD-ENGRFGFNVKGGYDQK----MPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFI   80 (106)
T ss_dssp             SSCCEEEEECCC-SSSCCSEEEEEEGGGT----EEEEEEEECSSSTTTSSSSCCCTTCEEEEETTBCTTSSCHHHHHHHH
T ss_pred             CCcEEEEEEEeC-CCCCccEEEEeeecCC----CCEEEEEEcCCCcchhccCCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence            456788999884 4678999999987644    78999999999999985 66999999999999999999999999999


Q ss_pred             hcC----CCeEEEEEEeC
Q psy1156         464 SSG----PLNMDLLISRT  477 (671)
Q Consensus       464 ~~~----g~~V~L~V~R~  477 (671)
                      +.+    ...+.|+|.+.
T Consensus        81 ~~~~~~~~~~v~L~vrp~   98 (106)
T d2cs5a1          81 KASCERHSGELMLLVRPN   98 (106)
T ss_dssp             HHHHHCCSSCEEEEEECC
T ss_pred             HhCCCCCCcEEEEEECCC
Confidence            843    34688888654

>d1wg6a_ b.36.1.1 (A:) Partitioning-defective 3-like protein, PAR3-L (RIKEN cDNA 2810455b10) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Partitioning-defective 3-like protein, PAR3-L (RIKEN cDNA 2810455b10)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.38  E-value=4e-13  Score=122.24  Aligned_cols=87  Identities=29%  Similarity=0.430  Sum_probs=73.8

Q ss_pred             EEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhcC----
Q psy1156         391 VRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSG----  466 (671)
Q Consensus       391 V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~~----  466 (671)
                      |.|.+ ....+|||+|.++.+...+...++||..|.+||+|+++|+|++||+|++|||++|.+++|.+|+.+|+++    
T Consensus        29 v~l~~-~~~~glG~~i~gg~~~~~~~~~~i~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~e~~~~lr~a~~~~  107 (127)
T d1wg6a_          29 IPLND-SGSAGLGVSLKGNKSRETGTDLGIFIKSIIHGGAAFKDGRLRMNDQLIAVNGETLLGKSNHEAMETLRRSMSME  107 (127)
T ss_dssp             EECSS-STTTCCCCEEEEEEETTTTEEEEEEEEECCSSSSTHHHHTSCSCCBEEEETTEESTTSCHHHHHHHHHHHHHHH
T ss_pred             EEEcc-CCCCcEeEEEEeecCCCCCCcCCEEEEEECCCCchhccCCCCCCCEEEeECCEECCCCCHHHHHHHHHhccccc
Confidence            44433 3357899999998876544336899999999999999999999999999999999999999999999954    


Q ss_pred             ---CCeEEEEEEeCC
Q psy1156         467 ---PLNMDLLISRTS  478 (671)
Q Consensus       467 ---g~~V~L~V~R~~  478 (671)
                         ...|+|+|.|..
T Consensus       108 ~~~~~~V~L~V~R~~  122 (127)
T d1wg6a_         108 GNIRGMIQLVILRRS  122 (127)
T ss_dssp             HHHTCEEEEEEEECS
T ss_pred             CCCCCEEEEEEeeCC
Confidence               568999999853

>d1x45a1 b.36.1.1 (A:8-92) Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=9.9e-13  Score=111.58  Aligned_cols=81  Identities=35%  Similarity=0.525  Sum_probs=67.0

Q ss_pred             EEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhcCCC--
Q psy1156         391 VRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPL--  468 (671)
Q Consensus       391 V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~~g~--  468 (671)
                      |.|.|. ++++|||+|.++....  ...++||..|.|||||+++|+|++||+|++|||+++.+++|++++.+|++++.  
T Consensus         2 V~l~k~-~g~~LGi~i~~~~~~~--~~~~i~I~~v~~gg~A~~~G~l~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~~   78 (85)
T d1x45a1           2 VFIEKQ-KGEILGVVIVESGWGS--ILPTVIIANMMHGGPAEKSGKLNIGDQIMSINGTSLVGLPLSTCQSIIKGLKNQS   78 (85)
T ss_dssp             EEEECC-TTSCCCEEEECCTTTS--SSCCCEEEEECTTCHHHHHCSCCTTCEEEEETTEECTTCCHHHHHHHHHTTTTCS
T ss_pred             eEEEeC-CCCccCEEEEeCCCCC--CCCCEEEEEeCCCCHHHHcCCCCcCCEEEEECCEECCCCCHHHHHHHHHcCCCCC
Confidence            778775 4689999998543211  12689999999999999999999999999999999999999999999997644  


Q ss_pred             eEEEEE
Q psy1156         469 NMDLLI  474 (671)
Q Consensus       469 ~V~L~V  474 (671)
                      .+.|.|
T Consensus        79 ~v~L~V   84 (85)
T d1x45a1          79 RVKLNI   84 (85)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            455554

>d1x5ra1 b.36.1.1 (A:8-106) Glutamate receptor interacting protein 2, GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein 2, GRIP2 (KIAA1719)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=7.2e-13  Score=115.40  Aligned_cols=88  Identities=22%  Similarity=0.229  Sum_probs=73.3

Q ss_pred             CeEEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhcC
Q psy1156         387 GQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSG  466 (671)
Q Consensus       387 ~~~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~~  466 (671)
                      +.+.|.|.+. +.++|||+|.+|.....+...++||..|.++|||+++|+|++||+|++|||++|.+++|++++.+|+++
T Consensus         8 e~~~V~l~~~-~~~~lG~~i~gg~~~~~~~~~~~~V~~i~~~s~A~~~G~l~~GD~Il~INg~~v~~~t~~e~~~~lr~~   86 (99)
T d1x5ra1           8 ETTEVVLCGD-PLSGFGLQLQGGIFATETLSSPPLVCFIEPDSPAERCGLLQVGDRVLSINGIATEDGTMEEANQLLRDA   86 (99)
T ss_dssp             EEEEEEECCC-TTTCCCEEEECCSCSSSBCSSCCEEEEECTTSHHHHTSSCCTTCBCSEETTEESTTSBHHHHHHHHHHH
T ss_pred             eeEEEEEEcC-CCCCcCEEEEEeccCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence            4567888774 568999999988754444347899999999999999999999999999999999999999999999955


Q ss_pred             C--CeEEEEEE
Q psy1156         467 P--LNMDLLIS  475 (671)
Q Consensus       467 g--~~V~L~V~  475 (671)
                      +  ..+.|.|.
T Consensus        87 ~~~~~l~l~v~   97 (99)
T d1x5ra1          87 ALAHKVVLEVE   97 (99)
T ss_dssp             HTTTCEEEEEE
T ss_pred             CCCCEEEEEEE
Confidence            4  44555553

>d1v6ba_ b.36.1.1 (A:) Harmonin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Harmonin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.36  E-value=7.6e-13  Score=118.93  Aligned_cols=87  Identities=25%  Similarity=0.459  Sum_probs=73.1

Q ss_pred             CeEEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhc-
Q psy1156         387 GQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISS-  465 (671)
Q Consensus       387 ~~~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~-  465 (671)
                      .++.+.+ +.  .++|||.|.||.+...   .++||..|.+||||+++|+|++||+|++|||+++.+++|.+++.+|+. 
T Consensus        18 ~v~~~~~-~~--~~~lG~~i~gg~d~~~---~~v~I~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~   91 (118)
T d1v6ba_          18 DVRLLRI-KK--EGSLDLALEGGVDSPV---GKVVVSAVYEGGAAERHGGVVKGDEIMAINGKIVTDYTLAEAEAALQKA   91 (118)
T ss_dssp             CEEEEEE-ES--CSCCCCEEEEBTTSSS---CSEEEEECCTTSHHHHHCSSCTTCEEEEESSCBCTTCBHHHHHHHHHHH
T ss_pred             eEEEEEe-cC--CCCCCEEEEeeecCCC---CCEEEEEECCCChHHhcCCCCCCCEEeeECCEECCCCcHHHHHHHHHhc
Confidence            4444443 33  3799999999876542   479999999999999999999999999999999999999999999984 


Q ss_pred             ---CCCeEEEEEEeCCc
Q psy1156         466 ---GPLNMDLLISRTSL  479 (671)
Q Consensus       466 ---~g~~V~L~V~R~~~  479 (671)
                         .+..|+|+|.|...
T Consensus        92 ~~~~~~~V~L~v~r~pp  108 (118)
T d1v6ba_          92 WNQGGDWIDLVVAVCPP  108 (118)
T ss_dssp             HHHTCSEEEEEEECCCS
T ss_pred             ccCCCCEEEEEEEeCCC
Confidence               36789999998643

>d1x5na1 b.36.1.1 (A:8-108) Harmonin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Harmonin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=1.1e-12  Score=114.77  Aligned_cols=84  Identities=25%  Similarity=0.406  Sum_probs=72.1

Q ss_pred             CeEEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhcC
Q psy1156         387 GQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSG  466 (671)
Q Consensus       387 ~~~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~~  466 (671)
                      ..+.|.|.+. .+.+|||.|.+|.+..    .|+||..|.+||||+++| |++||+|++|||+++.+++|.+++.+|+.+
T Consensus         8 ~~~~v~i~~~-~~~glG~~i~~g~~~~----~gi~V~~V~~gs~A~~~g-L~~GD~Il~VNg~~v~~~~~~~v~~~lk~~   81 (101)
T d1x5na1           8 KEKKVFISLV-GSRGLGCSISSGPIQK----PGIFISHVKPGSLSAEVG-LEIGDQIVEVNGVDFSNLDHKEAVNVLKSS   81 (101)
T ss_dssp             SSEEEEECCC-SSCCCCEEEEECCSSS----CSEEEEEECTTSTTTTTT-CCTTCEEEEETTEETTSCCTTHHHHHHHHC
T ss_pred             ccEEEEEEee-CCCcccEEEeccCCCC----CCEEEEEECCCChHHhCC-CCcccEEEEECCEECCCCCHHHHHHHHhCC
Confidence            3477888774 3689999999987653    689999999999999999 999999999999999999999999999976


Q ss_pred             CCeEEEEEEeC
Q psy1156         467 PLNMDLLISRT  477 (671)
Q Consensus       467 g~~V~L~V~R~  477 (671)
                      + .+.|+|.+.
T Consensus        82 ~-~~~l~v~~~   91 (101)
T d1x5na1          82 R-SLTISIVAA   91 (101)
T ss_dssp             S-SEEEEECSS
T ss_pred             C-CEEEEEEEC
Confidence            5 467777553

>d1wf7a_ b.36.1.1 (A:) Enigma homolog ENH {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Enigma homolog ENH
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.34  E-value=8.3e-13  Score=115.84  Aligned_cols=83  Identities=19%  Similarity=0.330  Sum_probs=73.5

Q ss_pred             EEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhcCCC
Q psy1156         389 TMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPL  468 (671)
Q Consensus       389 ~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~~g~  468 (671)
                      ..|++..   ..+|||+|.++.+..    .++||..|.+++||++++ |++||+|++|||+++.+++|++|+.+|+.++.
T Consensus         7 ~~v~~~g---~~g~Gf~i~gg~d~~----~~v~V~~v~~g~~a~~~~-L~~GD~Il~INg~~v~~~t~~eav~li~~~~~   78 (103)
T d1wf7a_           7 GSVSLVG---PAPWGFRLQGGKDFN----MPLTISSLKDGGKASQAH-VRIGDVVLSIDGISAQGMTHLEAQNKIKACTG   78 (103)
T ss_dssp             EEEEEES---SSCCSCCEEEETTTT----EEEEECCCCTTCHHHHTT-CCTTCBEEEETTEECSSCCHHHHHHHHHHCSS
T ss_pred             eEEEEEC---CCCccEEEEcccCCC----CCEEEEecCCCChHHHCC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCC
Confidence            4466644   368999999998754    689999999999999877 99999999999999999999999999999999


Q ss_pred             eEEEEEEeCCc
Q psy1156         469 NMDLLISRTSL  479 (671)
Q Consensus       469 ~V~L~V~R~~~  479 (671)
                      .|.|+|.|...
T Consensus        79 ~v~L~v~R~~~   89 (103)
T d1wf7a_          79 SLNMTLQRASA   89 (103)
T ss_dssp             EEEEEECCCSC
T ss_pred             eEEEEEEECCC
Confidence            99999998655

>d1ujva_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=3.2e-12  Score=110.52  Aligned_cols=82  Identities=34%  Similarity=0.459  Sum_probs=66.1

Q ss_pred             ceeeEEEeeCCCCCcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcC
Q psy1156         575 TFHTIVFEKGPGKKGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIK  654 (671)
Q Consensus       575 ~~~~V~L~K~~g~~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg  654 (671)
                      +..+|+|.|+.  .+|||+|.++.+      +.+|..+.   +|+..++|++||+||+|||++|.+++|++|+++||+++
T Consensus        10 e~~~v~l~k~~--~glGf~i~g~~~------~~~~~~~~---~~~~~~~L~~GD~Il~VNg~~v~~~t~~evv~~lk~~~   78 (96)
T d1ujva_          10 ELMTLTIVKGA--QGFGFTIADSPT------GQRVKQIL---DIQGCPGLCEGDLIVEINQQNVQNLSHTEVVDILKDCP   78 (96)
T ss_dssp             CCEEEEEECCS--SSSSEEEEEETT------EEEEEEES---CGGGSTTCCSSCEEEEETTEECSSCCHHHHHHHHHHSC
T ss_pred             eEEEEEEEeCC--CcccEEEEeeCC------CceEeecc---CcccccCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            45789999986  689999998755      34444443   35555569999999999999999999999999999875


Q ss_pred             C-CcEEEEEEeCCC
Q psy1156         655 N-GSISLHICRRLK  667 (671)
Q Consensus       655 ~-~~VtL~V~Rr~~  667 (671)
                      . ..|+|+|.|...
T Consensus        79 ~g~~v~l~v~R~~~   92 (96)
T d1ujva_          79 IGSETSLIIHRGSG   92 (96)
T ss_dssp             TTSEEEEEEECCSS
T ss_pred             CCCEEEEEEEECCC
Confidence            3 579999988654

>d1ufxa_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=1.1e-12  Score=115.00  Aligned_cols=83  Identities=34%  Similarity=0.455  Sum_probs=70.3

Q ss_pred             EEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhcC--
Q psy1156         389 TMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSG--  466 (671)
Q Consensus       389 ~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~~--  466 (671)
                      +.|+|.|.  .++|||+|.++.+..  . .++||..|.++|||+++|.|++||+|++|||+++.+++|.+++.+|+.+  
T Consensus         8 ~vv~~~k~--~~~lG~~i~gg~~~~--~-~~~~I~~i~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~a~~   82 (103)
T d1ufxa_           8 TLVRVKKS--AATLGIAIEGGANTR--Q-PLPRIVTIQRGGSAHNCGQLKVGHVILEVNGLTLRGKEHREAARIIAEAFK   82 (103)
T ss_dssp             EEEEEECC--SSSCCEEEECBTTSS--C-SSCEEEEECTTSHHHHHCSSCTTCBCCEETTEECTTCBHHHHHHHHHHHHH
T ss_pred             EEEEEEeC--CCccCEEEeeecCCC--C-CCEEEEEEcCCcchhhcCCCCCCCEEEEECCEECCCCcHHHHHHHHHHccC
Confidence            55777664  489999999987543  1 5699999999999999999999999999999999999999999999954  


Q ss_pred             ---CCeEEEEEEe
Q psy1156         467 ---PLNMDLLISR  476 (671)
Q Consensus       467 ---g~~V~L~V~R  476 (671)
                         ...+.|.|.+
T Consensus        83 ~~~~~~~~l~v~~   95 (103)
T d1ufxa_          83 TKDRDYIDFLVTE   95 (103)
T ss_dssp             CSSCSEEEEEECC
T ss_pred             CCccceEEEEEeC
Confidence               3567777754

>d1v5la_ b.36.1.1 (A:) Alpha-actinin-2 associated LIM protein {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Alpha-actinin-2 associated LIM protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.30  E-value=1.1e-12  Score=115.16  Aligned_cols=76  Identities=21%  Similarity=0.297  Sum_probs=70.2

Q ss_pred             CCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhcCCCeEEEEEEeCC
Q psy1156         399 NEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISRTS  478 (671)
Q Consensus       399 ~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~~g~~V~L~V~R~~  478 (671)
                      +.+|||+|.++.+..    .++||..|.+++||+.++ |++||+|++|||++|.+++|.+++.+|+.++..|.|+|.|..
T Consensus        14 ~~~~Gf~l~gg~d~~----~~i~V~~v~~g~~A~~~~-L~~GD~Il~VNg~~v~~~~~~e~v~ll~~~~~~v~l~V~R~~   88 (103)
T d1v5la_          14 PAPWGFRLSGGIDFN----QPLVITRITPGSKAAAAN-LCPGDVILAIDGFGTESMTHADAQDRIKAASYQLCLKIDRAE   88 (103)
T ss_dssp             SSCCSBCCEEETTTT----EEEECSCBCTTSTTGGGT-CCTTCBEEEETTEECSSCCHHHHHHHHTTCCSEEECEECCCT
T ss_pred             CCCCCEEEEeecCCC----CCEEEEEccCCChHHhCC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEEEEEECC
Confidence            489999999998654    689999999999999888 999999999999999999999999999999999999999865


Q ss_pred             c
Q psy1156         479 L  479 (671)
Q Consensus       479 ~  479 (671)
                      .
T Consensus        89 ~   89 (103)
T d1v5la_          89 T   89 (103)
T ss_dssp             T
T ss_pred             c
Confidence            4

>d1vaea_ b.36.1.1 (A:) Rhophilin-2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Rhophilin-2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.30  E-value=5.3e-13  Score=118.64  Aligned_cols=80  Identities=16%  Similarity=0.193  Sum_probs=69.7

Q ss_pred             CeEEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhcC
Q psy1156         387 GQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSG  466 (671)
Q Consensus       387 ~~~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~~  466 (671)
                      .++.|+|.|..  ++|||+|.++        .++||..|.+++||+++| |++||+|++|||++|.+++|++++.+|+.+
T Consensus        15 ~pr~v~l~k~~--~g~Gf~i~g~--------~~v~V~~V~~~spA~~~G-L~~GD~Il~INg~~v~~~~~~ev~~llk~~   83 (111)
T d1vaea_          15 PPRGIHFTVEE--GDLGFTLRGN--------TPVQVHFLDPHCSASLAG-AKEGDYIVSIQGVDCKWLTVSEVMKLLKSF   83 (111)
T ss_dssp             CCCCCCEECCS--SCCSCCEESS--------SSCEECCCCTTSSHHHHH-CCTTCEEEEETTEECSSCCHHHHHHHHHHT
T ss_pred             CCEEEEEEECC--CccCEEEECC--------ccEEEEEEcCCChHHhcc-cCcccEEEEECCEEcCCCCHHHHHHHHHcC
Confidence            34678888854  6899999853        579999999999999999 999999999999999999999999999966


Q ss_pred             -CCeEEEEEEeC
Q psy1156         467 -PLNMDLLISRT  477 (671)
Q Consensus       467 -g~~V~L~V~R~  477 (671)
                       +..|.|+|.+.
T Consensus        84 ~~~~v~l~v~~~   95 (111)
T d1vaea_          84 GGEEVEMKVVSL   95 (111)
T ss_dssp             TTSEECEEEECE
T ss_pred             CCCeEEEEEECC
Confidence             46788888753

>d1fc6a3 b.36.1.3 (A:157-248) Photosystem II D1 C-terminal processing protease {Algae (Scenedesmus obliquus) [TaxId: 3088]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Tail specific protease PDZ domain
domain: Photosystem II D1 C-terminal processing protease
species: Algae (Scenedesmus obliquus) [TaxId: 3088]

Probab=99.28  E-value=6.8e-12  Score=107.57  Aligned_cols=75  Identities=16%  Similarity=0.318  Sum_probs=65.1

Q ss_pred             CcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcCCCcEEEEEEeCC
Q psy1156         588 KGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKNGSISLHICRRL  666 (671)
Q Consensus       588 ~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg~~~VtL~V~Rr~  666 (671)
                      .++|+.+....+..   .+++|.+|.++|||+++| |++||+|++|||+++.++++.+++.+|+..+...|.|+|.|..
T Consensus         5 ~GiGi~i~~~~~~~---~~v~V~~v~~gsPA~~AG-l~~GD~I~~Ing~~v~~~~~~~~~~~l~g~~g~~v~l~i~R~g   79 (92)
T d1fc6a3           5 TGVGLEITYDGGSG---KDVVVLTPAPGGPAEKAG-ARAGDVIVTVDGTAVKGMSLYDVSDLLQGEADSQVEVVLHAPG   79 (92)
T ss_dssp             BBCSEEEEECTTCS---SCEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHCBSTTCEEEEEEEETT
T ss_pred             EEEEEEEEEcCCCC---ceEEEEEecCCCChhHHh-hHcCCcceecCceEcCCCCHHHHHHHhhCCCCCEEEEEEEECC
Confidence            67899987554332   479999999999999999 9999999999999999999999999998655467999999964

>d1wifa_ b.36.1.1 (A:) hypothetical PDZ domain containing protein Uqcrc2 (4930408O21Rik) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: hypothetical PDZ domain containing protein Uqcrc2 (4930408O21Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.26  E-value=5.6e-12  Score=114.44  Aligned_cols=85  Identities=19%  Similarity=0.288  Sum_probs=74.9

Q ss_pred             CCeEEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhc
Q psy1156         386 EGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISS  465 (671)
Q Consensus       386 ~~~~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~  465 (671)
                      ..++.|+|.+..  .+|||.|..+.       .+++|..|.++|||+++|.|++||+|++|||+.|.+++|++++.+|+.
T Consensus        26 ~~~~~v~l~~g~--~GlG~~i~~~~-------~~i~V~~v~~gg~A~~~G~l~~GD~Il~Ing~~v~~~~~~e~~~llr~   96 (126)
T d1wifa_          26 NKVIQTKLTVGN--LGLGLVVIQNG-------PYLQISHLINKGAAASDGILQPGDVLISVGHANVLGYTLREFLKLLQN   96 (126)
T ss_dssp             CCEEEEEEECCT--TCCCCCEEEET-------TEEEECCCCTTSSGGGCSSSCTTCBEEEESSSCCTTCCHHHHHHHHTS
T ss_pred             CcEEEEEEeeCC--CcEEEEEEecC-------CcEEEEEECCCChHHHcCCCCCCCEEEEECCEEeEeccHHHHHHHHhC
Confidence            456788888754  78999998754       679999999999999999999999999999999999999999999996


Q ss_pred             C--CCeEEEEEEeCCc
Q psy1156         466 G--PLNMDLLISRTSL  479 (671)
Q Consensus       466 ~--g~~V~L~V~R~~~  479 (671)
                      .  +..|+|+|.|...
T Consensus        97 ~~~g~~v~L~v~R~~~  112 (126)
T d1wifa_          97 ITIGTVLQIKAYRGFL  112 (126)
T ss_dssp             CCSSCEEEEEEESSSS
T ss_pred             CCCCCEEEEEEEeCCC
Confidence            4  5799999998643

>d1wh1a_ b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1095
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=7.6e-12  Score=113.00  Aligned_cols=89  Identities=26%  Similarity=0.441  Sum_probs=73.1

Q ss_pred             CeEEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhc-
Q psy1156         387 GQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISS-  465 (671)
Q Consensus       387 ~~~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~-  465 (671)
                      +++.|+|.|....++|||+|.++.+.. .. .||||..|.+||||+++|+|++||+|++|||++|.+  +.+++.+|+. 
T Consensus        19 e~~~V~l~k~~~~~~lG~~i~~~~~~~-~~-~gi~V~~v~~gg~A~~~g~L~~GD~Il~INg~~v~~--~~~~~~~l~~~   94 (124)
T d1wh1a_          19 ELEEVDLYRMNSQDKLGLTVCYRTDDE-DD-IGIYISEIDPNSIAAKDGRIREGDRIIQINGIEVQN--REEAVALLTSE   94 (124)
T ss_dssp             EECCBCCCCSSTTCCCCEEEECCCCCS-SC-CCEEEEEECSSSHHHHTCCCCTTCEEEEESSCBCCS--HHHHHHHHTCS
T ss_pred             eeEEEEEEECCCCCcccEEEEecCCCC-CC-CCEEEEEECCCChhhhhcccCCCCEEEEECCEECCC--HHHHHHHHhhC
Confidence            556788888666689999999876432 22 689999999999999999999999999999999975  5677777875 


Q ss_pred             CCCeEEEEEEeCCc
Q psy1156         466 GPLNMDLLISRTSL  479 (671)
Q Consensus       466 ~g~~V~L~V~R~~~  479 (671)
                      .+..|.|+|.|...
T Consensus        95 ~~~~v~l~v~r~~~  108 (124)
T d1wh1a_          95 ENKNFSLLIARPEL  108 (124)
T ss_dssp             SCCSCCEEEEECSS
T ss_pred             CCCcEEEEEEeCCC
Confidence            46789999988644

>d1fc6a3 b.36.1.3 (A:157-248) Photosystem II D1 C-terminal processing protease {Algae (Scenedesmus obliquus) [TaxId: 3088]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Tail specific protease PDZ domain
domain: Photosystem II D1 C-terminal processing protease
species: Algae (Scenedesmus obliquus) [TaxId: 3088]

Probab=99.17  E-value=5.3e-11  Score=101.89  Aligned_cols=76  Identities=22%  Similarity=0.414  Sum_probs=66.5

Q ss_pred             CCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHh-cCCCeEEEEEEeC
Q psy1156         399 NEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIIS-SGPLNMDLLISRT  477 (671)
Q Consensus       399 ~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~-~~g~~V~L~V~R~  477 (671)
                      ..++||.+.......    .+++|..|.++|||+++| |++||+|++|||+++.++++.+++.+|+ ..+..|.|+|.|.
T Consensus         4 ~~GiGi~i~~~~~~~----~~v~V~~v~~gsPA~~AG-l~~GD~I~~Ing~~v~~~~~~~~~~~l~g~~g~~v~l~i~R~   78 (92)
T d1fc6a3           4 VTGVGLEITYDGGSG----KDVVVLTPAPGGPAEKAG-ARAGDVIVTVDGTAVKGMSLYDVSDLLQGEADSQVEVVLHAP   78 (92)
T ss_dssp             CBBCSEEEEECTTCS----SCEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHCBSTTCEEEEEEEET
T ss_pred             eEEEEEEEEEcCCCC----ceEEEEEecCCCChhHHh-hHcCCcceecCceEcCCCCHHHHHHHhhCCCCCEEEEEEEEC
Confidence            367899887644332    679999999999999999 9999999999999999999999999998 5677899999997


Q ss_pred             Cc
Q psy1156         478 SL  479 (671)
Q Consensus       478 ~~  479 (671)
                      +.
T Consensus        79 g~   80 (92)
T d1fc6a3          79 GA   80 (92)
T ss_dssp             TE
T ss_pred             CC
Confidence            65

>d1ujva_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=2.5e-10  Score=98.44  Aligned_cols=82  Identities=24%  Similarity=0.263  Sum_probs=64.4

Q ss_pred             CCCeEEEEEEeCCCCCcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHh
Q psy1156         385 QEGQTMVRVNRRDFNEELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIIS  464 (671)
Q Consensus       385 ~~~~~~V~L~k~~~~~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~  464 (671)
                      ..++++|+|.|..  .+|||+|.++..       +.+|..+   .+|+..+.|++||+|++|||++|.+++|++|+.+|+
T Consensus         8 ~~e~~~v~l~k~~--~glGf~i~g~~~-------~~~~~~~---~~~~~~~~L~~GD~Il~VNg~~v~~~t~~evv~~lk   75 (96)
T d1ujva_           8 QAELMTLTIVKGA--QGFGFTIADSPT-------GQRVKQI---LDIQGCPGLCEGDLIVEINQQNVQNLSHTEVVDILK   75 (96)
T ss_dssp             CCCCEEEEEECCS--SSSSEEEEEETT-------EEEEEEE---SCGGGSTTCCSSCEEEEETTEECSSCCHHHHHHHHH
T ss_pred             CceEEEEEEEeCC--CcccEEEEeeCC-------CceEeec---cCcccccCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            4567899999964  689999998763       3333333   234444459999999999999999999999999999


Q ss_pred             cC--CCeEEEEEEeCC
Q psy1156         465 SG--PLNMDLLISRTS  478 (671)
Q Consensus       465 ~~--g~~V~L~V~R~~  478 (671)
                      +.  +..|+|+|.|..
T Consensus        76 ~~~~g~~v~l~v~R~~   91 (96)
T d1ujva_          76 DCPIGSETSLIIHRGS   91 (96)
T ss_dssp             HSCTTSEEEEEEECCS
T ss_pred             cCCCCCEEEEEEEECC
Confidence            64  578999998853

>d2z9ia1 b.36.1.4 (A:227-314) Protease PepD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Protease PepD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.94  E-value=1.5e-09  Score=91.64  Aligned_cols=72  Identities=17%  Similarity=0.333  Sum_probs=60.0

Q ss_pred             CcccEEEecCCCCCCCCcceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcC-CCcEEEEEEeCC
Q psy1156         588 KGLGFTIVGGKDSPRGAIGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIK-NGSISLHICRRL  666 (671)
Q Consensus       588 ~~LGfsL~Gg~ds~~g~~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg-~~~VtL~V~Rr~  666 (671)
                      ..||+.+....+.    .|++|.+|.|+|||+++| |++||+|++|||++|.  +..++..++.... ...|.|+|.|+.
T Consensus         3 ~~LGv~~~~~~~~----~Gv~V~~V~~~spA~~aG-l~~GD~I~~ing~~i~--~~~~~~~~i~~~~~g~~v~l~v~r~~   75 (88)
T d2z9ia1           3 ASLGVQVTNDKDT----LGAKIVEVVAGGAAANAG-VPKGVVVTKVDDRPIN--SADALVAAVRSKAPGATVALTFQDPS   75 (88)
T ss_dssp             EECCEEEECCC-C----CSEEEEEECTTSTTGGGT-CCTTCEEEEETTEECC--SHHHHHHHHHTSCTTCEEEEEEEETT
T ss_pred             CEEeEEEEecCCC----CcEEEEEECCCCHHHHcC-CCCCCEEEEeCCCcCC--cHHHHHHHHHhCCCCCEEEEEEEECC
Confidence            4689998766554    499999999999999999 9999999999999998  5678777776643 468999999854

>d1ky9b2 b.36.1.4 (B:359-446) Protease Do (DegP, HtrA), C-terminal domains {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Protease Do (DegP, HtrA), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=98.83  E-value=8.7e-10  Score=93.32  Aligned_cols=59  Identities=25%  Similarity=0.356  Sum_probs=54.1

Q ss_pred             cceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcCCCcEEEEEEeCCC
Q psy1156         605 IGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKNGSISLHICRRLK  667 (671)
Q Consensus       605 ~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg~~~VtL~V~Rr~~  667 (671)
                      .|++|..|.++|||+++| |++||+|++|||+++.  +++++..+|++.+ +.|.|+|.|+.+
T Consensus        25 ~Gv~V~~V~~~spA~~aG-l~~GDvI~~ing~~v~--~~~~~~~~l~~~~-~~v~l~v~R~~~   83 (88)
T d1ky9b2          25 QGVVVNNVKTGTPAAQIG-LKKGDVIIGANQQAVK--NIAELRKVLDSKP-SVLALNIQRGDS   83 (88)
T ss_dssp             SCCCBCCCCSSCTTGGGT-CCSSCEEEEETTEECS--SHHHHHHHTTTCC-SCCCEEEESSSC
T ss_pred             CeEEEEEECCCCHHHHcC-CCCCcEEEEECCEEcC--CHHHHHHHHHhCC-CEEEEEEEECCE
Confidence            589999999999999999 9999999999999998  7899999998765 789999998764

>d2z9ia1 b.36.1.4 (A:227-314) Protease PepD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Protease PepD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.83  E-value=3.8e-09  Score=89.11  Aligned_cols=70  Identities=17%  Similarity=0.313  Sum_probs=57.4

Q ss_pred             CcccEEEeeecCCCCCCcCcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHh--cCCCeEEEEEEeC
Q psy1156         400 EELGIYIAKIKNSSEGNIGGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIIS--SGPLNMDLLISRT  477 (671)
Q Consensus       400 ~~LGfsI~gg~~~~~g~~~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~--~~g~~V~L~V~R~  477 (671)
                      ..||+.+......     .|++|..|.++|||+++| |++||+|++|||+.+.++  .++...+.  ..+..+.|+|.|.
T Consensus         3 ~~LGv~~~~~~~~-----~Gv~V~~V~~~spA~~aG-l~~GD~I~~ing~~i~~~--~~~~~~i~~~~~g~~v~l~v~r~   74 (88)
T d2z9ia1           3 ASLGVQVTNDKDT-----LGAKIVEVVAGGAAANAG-VPKGVVVTKVDDRPINSA--DALVAAVRSKAPGATVALTFQDP   74 (88)
T ss_dssp             EECCEEEECCC-C-----CSEEEEEECTTSTTGGGT-CCTTCEEEEETTEECCSH--HHHHHHHHTSCTTCEEEEEEEET
T ss_pred             CEEeEEEEecCCC-----CcEEEEEECCCCHHHHcC-CCCCCEEEEeCCCcCCcH--HHHHHHHHhCCCCCEEEEEEEEC
Confidence            4789988865543     789999999999999999 999999999999999765  44444443  5678999999985

>d1k32a1 b.36.1.3 (A:763-853) Tricorn protease {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Tail specific protease PDZ domain
domain: Tricorn protease
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.65  E-value=1.4e-08  Score=86.59  Aligned_cols=60  Identities=12%  Similarity=0.124  Sum_probs=52.6

Q ss_pred             ceeEEEeCCC--------CHHhHhCCC-CCCCEEEEECCeecCCCCHHHHHHHHHhcCCCcEEEEEEeCCCC
Q psy1156         606 GIFIKSILDN--------GQAAEDGRL-KEGDEILAINGQVCHDLTHLEAISLFKTIKNGSISLHICRRLKS  668 (671)
Q Consensus       606 GVfIssV~pg--------SpAaraGrL-r~GDrILeVNG~sV~~lSheEAV~lLK~sg~~~VtL~V~Rr~~~  668 (671)
                      ++.|..|.+|        |||+++| | ++||+|++|||++|.+  ..+++.+|+..+...|.|+|.|....
T Consensus        13 ~~~I~~i~~G~~~~~~~~sPa~~aG-l~k~GD~I~~IdG~~v~~--~~~~~~~l~g~~G~~V~L~i~R~g~~   81 (91)
T d1k32a1          13 HYVVAKAYAGDYSNEGEKSPIFEYG-IDPTGYLIEDIDGETVGA--GSNIYRVLSEKAGTSARIRLSGKGGD   81 (91)
T ss_dssp             EEEEEEECBSCTTSTTCBCGGGGGT-CCCTTCEEEEETTEECBT--TBCHHHHHHTTTTSEEEEEEECSSSC
T ss_pred             eEEEEEEecCCCCCcccCChhHhcC-CCCCCCEEEEECCEeecC--cceeEEEEecCCCCEEEEEEEeCCCC
Confidence            7899999987        9999999 7 8999999999999985  45889999987767899999997654

>d1lcya1 b.36.1.4 (A:226-325) Mitochondrial serine protease HtrA2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Mitochondrial serine protease HtrA2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.65  E-value=2.7e-08  Score=85.38  Aligned_cols=58  Identities=26%  Similarity=0.438  Sum_probs=52.6

Q ss_pred             cceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcCCCcEEEEEEeCCC
Q psy1156         605 IGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIKNGSISLHICRRLK  667 (671)
Q Consensus       605 ~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg~~~VtL~V~Rr~~  667 (671)
                      .|++|.+|.++|||+++| |++||+|++|||++|.  +..++.++++.  ...+.|.|.|+.+
T Consensus        31 ~Gv~V~~V~~~spA~~aG-l~~GDiI~~ing~~V~--s~~dl~~~l~~--g~~v~l~v~R~g~   88 (100)
T d1lcya1          31 HGVLIHKVILGSPAHRAG-LRPGDVILAIGEQMVQ--NAEDVYEAVRT--QSQLAVQIRRGRE   88 (100)
T ss_dssp             SCEEEEEECTTSHHHHHT-CCTTCEEEEETTEECC--SHHHHHHHHTT--CSSEEEEEEETTE
T ss_pred             CcEEEEEECCCchHhhcC-CCCCcEEEEECCEEcC--CHHHHHHHhcC--CCEEEEEEEECCE
Confidence            589999999999999999 9999999999999998  78899998863  3789999999864

>d1ky9b2 b.36.1.4 (B:359-446) Protease Do (DegP, HtrA), C-terminal domains {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Protease Do (DegP, HtrA), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=98.59  E-value=9e-09  Score=86.92  Aligned_cols=60  Identities=30%  Similarity=0.474  Sum_probs=54.9

Q ss_pred             CcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhcCCCeEEEEEEeCCcc
Q psy1156         418 GGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISRTSLK  480 (671)
Q Consensus       418 ~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~~g~~V~L~V~R~~~~  480 (671)
                      .|++|..|.++|||+++| |++||+|++|||+++.  +.+++..+++..+..+.|+|.|.+..
T Consensus        25 ~Gv~V~~V~~~spA~~aG-l~~GDvI~~ing~~v~--~~~~~~~~l~~~~~~v~l~v~R~~~~   84 (88)
T d1ky9b2          25 QGVVVNNVKTGTPAAQIG-LKKGDVIIGANQQAVK--NIAELRKVLDSKPSVLALNIQRGDST   84 (88)
T ss_dssp             SCCCBCCCCSSCTTGGGT-CCSSCEEEEETTEECS--SHHHHHHHTTTCCSCCCEEEESSSCE
T ss_pred             CeEEEEEECCCCHHHHcC-CCCCcEEEEECCEEcC--CHHHHHHHHHhCCCEEEEEEEECCEE
Confidence            789999999999999999 9999999999999996  56788899998888999999998763

>d1sota1 b.36.1.4 (A:255-353) Stress sensor protease DegS, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Stress sensor protease DegS, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.45  E-value=1.4e-08  Score=87.46  Aligned_cols=63  Identities=19%  Similarity=0.287  Sum_probs=47.2

Q ss_pred             CcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHh--cCCCeEEEEEEeCCccccc
Q psy1156         418 GGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIIS--SGPLNMDLLISRTSLKKSN  483 (671)
Q Consensus       418 ~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~--~~g~~V~L~V~R~~~~~~~  483 (671)
                      .|++|..|.++|||+++| |++||+|++|||+.|.++.  ++...+.  ..+..+.|+|.|++.....
T Consensus        26 ~Gv~V~~V~~~spA~~aG-l~~GDiI~~ing~~v~~~~--~l~~~l~~~~~g~~v~l~v~R~g~~~~~   90 (99)
T d1sota1          26 QGIVVNEVSPDGPAANAG-IQVNDLIISVDNKPAISAL--ETMDQVAEIRPGSVIPVVVMRDDKQLTL   90 (99)
T ss_dssp             -CEECCCCCSSSTTTSSS-CCTTCEECBSSSSBCCCSH--HHHHHHHHSCTTCEEEECC-----CCCE
T ss_pred             CccEEEEecCCCCHHHcC-CCcceEEEEECCEecccHH--HHHHHHHcCCCCCEEEEEEEECCEEEEE
Confidence            689999999999999999 9999999999999998754  3334443  4678999999998875443

>d1k32a1 b.36.1.3 (A:763-853) Tricorn protease {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Tail specific protease PDZ domain
domain: Tricorn protease
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.45  E-value=2.9e-07  Score=78.28  Aligned_cols=71  Identities=14%  Similarity=0.106  Sum_probs=56.8

Q ss_pred             CcccEEEeeecCCCCCCcCcEEEEEEcCC--------ChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHh-cCCCeE
Q psy1156         400 EELGIYIAKIKNSSEGNIGGFVVAHIVSG--------GLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIIS-SGPLNM  470 (671)
Q Consensus       400 ~~LGfsI~gg~~~~~g~~~GI~Vs~V~pG--------spA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~-~~g~~V  470 (671)
                      +.||+.+.-..       .++.|.+|.+|        |||+++|.+++||+|++|||++|.++.  +++.+|+ ..+..|
T Consensus         1 G~lG~d~~~~~-------~~~~I~~i~~G~~~~~~~~sPa~~aGl~k~GD~I~~IdG~~v~~~~--~~~~~l~g~~G~~V   71 (91)
T d1k32a1           1 GRIACDFKLDG-------DHYVVAKAYAGDYSNEGEKSPIFEYGIDPTGYLIEDIDGETVGAGS--NIYRVLSEKAGTSA   71 (91)
T ss_dssp             CBCSEEEEEET-------TEEEEEEECBSCTTSTTCBCGGGGGTCCCTTCEEEEETTEECBTTB--CHHHHHHTTTTSEE
T ss_pred             CcccEEEEEEC-------CeEEEEEEecCCCCCcccCChhHhcCCCCCCCEEEEECCEeecCcc--eeEEEEecCCCCEE
Confidence            35676666432       67999999998        999999933899999999999998654  5667776 678899


Q ss_pred             EEEEEeCCc
Q psy1156         471 DLLISRTSL  479 (671)
Q Consensus       471 ~L~V~R~~~  479 (671)
                      .|+|.|.+.
T Consensus        72 ~L~i~R~g~   80 (91)
T d1k32a1          72 RIRLSGKGG   80 (91)
T ss_dssp             EEEEECSSS
T ss_pred             EEEEEeCCC
Confidence            999999664

>d2hgaa1 b.36.1.6 (A:23-125) Uncharacterized protein MTH1368 {Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: MTH1368 C-terminal domain-like
domain: Uncharacterized protein MTH1368
species: Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.44  E-value=1.3e-07  Score=82.10  Aligned_cols=58  Identities=24%  Similarity=0.221  Sum_probs=51.2

Q ss_pred             cceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhc-CCCcEEEEEEeCC
Q psy1156         605 IGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTI-KNGSISLHICRRL  666 (671)
Q Consensus       605 ~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~s-g~~~VtL~V~Rr~  666 (671)
                      .||+|..|.+++||++ + |++||+|++|||+.|.  ++.++...|+.. +...|.|.|.|+.
T Consensus         3 ~Gv~V~~V~~~sPA~~-~-L~~GD~I~~ing~~v~--~~~~l~~~i~~~~~G~~v~l~v~R~~   61 (103)
T d2hgaa1           3 DGVQIDSVVPGSPASK-V-LTPGLVIESINGMPTS--NLTTYSAALKTISVGEVINITTDQGT   61 (103)
T ss_dssp             CCEEEEEECSSSGGGG-T-SCTTCEEEEETTEECS--SHHHHHHHHTTCCTTCEEEEEETTEE
T ss_pred             CcEEEEEECCCChHHh-c-CCCCCEEEEECCEEcC--CHHHHHHHHhhCCCCCEEEEEEEECC
Confidence            4899999999999975 6 9999999999999998  789999999875 3577999998764

>d1lcya1 b.36.1.4 (A:226-325) Mitochondrial serine protease HtrA2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Mitochondrial serine protease HtrA2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.40  E-value=3.3e-07  Score=78.39  Aligned_cols=61  Identities=18%  Similarity=0.340  Sum_probs=53.8

Q ss_pred             CcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHhcCCCeEEEEEEeCCcccc
Q psy1156         418 GGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIISSGPLNMDLLISRTSLKKS  482 (671)
Q Consensus       418 ~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~~~g~~V~L~V~R~~~~~~  482 (671)
                      .|++|..|.++|||+++| |++||.|++|||+.|.+  ..++...++ .+..+.|+|.|++....
T Consensus        31 ~Gv~V~~V~~~spA~~aG-l~~GDiI~~ing~~V~s--~~dl~~~l~-~g~~v~l~v~R~g~~~~   91 (100)
T d1lcya1          31 HGVLIHKVILGSPAHRAG-LRPGDVILAIGEQMVQN--AEDVYEAVR-TQSQLAVQIRRGRETLT   91 (100)
T ss_dssp             SCEEEEEECTTSHHHHHT-CCTTCEEEEETTEECCS--HHHHHHHHT-TCSSEEEEEEETTEEEE
T ss_pred             CcEEEEEECCCchHhhcC-CCCCcEEEEECCEEcCC--HHHHHHHhc-CCCEEEEEEEECCEEEE
Confidence            789999999999999999 99999999999999974  567777786 68899999999887433

>d1ky9a1 b.36.1.4 (A:260-353) Protease Do (DegP, HtrA), C-terminal domains {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Protease Do (DegP, HtrA), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=98.39  E-value=3.3e-08  Score=84.26  Aligned_cols=60  Identities=28%  Similarity=0.443  Sum_probs=52.5

Q ss_pred             cceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcC-CCcEEEEEEeCCC
Q psy1156         605 IGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIK-NGSISLHICRRLK  667 (671)
Q Consensus       605 ~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg-~~~VtL~V~Rr~~  667 (671)
                      .|++|..|.++|||+++| |++||+|++|||++|.  +..++..+|...+ ...+.|+|.|+.+
T Consensus        27 ~Gv~V~~V~~~spA~~aG-l~~gDvI~~i~g~~v~--~~~~l~~~l~~~~~g~~v~l~v~R~g~   87 (94)
T d1ky9a1          27 RGAFVSQVLPNSSAAKAG-IKAGDVITSLNGKPIS--SFAALRAQVGTMPVGSKLTLGLLRDGK   87 (94)
T ss_dssp             CSEECCCCTTCSSSTTTT-CCTTCEECBSSSSBCC--SSHHHHHHTTSSBTTCCCEEEEESSSC
T ss_pred             CCcEEEECCCChhHHHhC-CCcccEEEEECCEEeC--CHHHHHHHHHhCCCCCEEEEEEEECCE
Confidence            489999999999999999 9999999999999998  5677888886643 4679999999865

>d1sota1 b.36.1.4 (A:255-353) Stress sensor protease DegS, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Stress sensor protease DegS, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.32  E-value=6.8e-08  Score=83.11  Aligned_cols=61  Identities=23%  Similarity=0.402  Sum_probs=47.4

Q ss_pred             cceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhc-CCCcEEEEEEeCCCC
Q psy1156         605 IGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTI-KNGSISLHICRRLKS  668 (671)
Q Consensus       605 ~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~s-g~~~VtL~V~Rr~~~  668 (671)
                      .|++|.+|.++|||+++| |++||+|++|||++|.  +..++...|.+. ....+.|+|.|+.+.
T Consensus        26 ~Gv~V~~V~~~spA~~aG-l~~GDiI~~ing~~v~--~~~~l~~~l~~~~~g~~v~l~v~R~g~~   87 (99)
T d1sota1          26 QGIVVNEVSPDGPAANAG-IQVNDLIISVDNKPAI--SALETMDQVAEIRPGSVIPVVVMRDDKQ   87 (99)
T ss_dssp             -CEECCCCCSSSTTTSSS-CCTTCEECBSSSSBCC--CSHHHHHHHHHSCTTCEEEECC-----C
T ss_pred             CccEEEEecCCCCHHHcC-CCcceEEEEECCEecc--cHHHHHHHHHcCCCCCEEEEEEEECCEE
Confidence            489999999999999999 9999999999999998  456777777554 346799999998754

>d2i6va1 b.36.1.5 (A:219-305) General secretion pathway protein C, EpsC {Vibrio cholerae [TaxId: 666]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: EpsC C-terminal domain-like
domain: General secretion pathway protein C, EpsC
species: Vibrio cholerae [TaxId: 666]

Probab=98.32  E-value=4e-07  Score=76.56  Aligned_cols=60  Identities=23%  Similarity=0.258  Sum_probs=52.3

Q ss_pred             cceeEEEeCCCCHHhHhCCCCCCCEEEEECCeecCCCCHHHHHHHHHhcC-CCcEEEEEEeCCC
Q psy1156         605 IGIFIKSILDNGQAAEDGRLKEGDEILAINGQVCHDLTHLEAISLFKTIK-NGSISLHICRRLK  667 (671)
Q Consensus       605 ~GVfIssV~pgSpAaraGrLr~GDrILeVNG~sV~~lSheEAV~lLK~sg-~~~VtL~V~Rr~~  667 (671)
                      .|+.|..|.++++|+++| |++||+|++|||++|.  +..++..++...+ ...+.|.|.|+.+
T Consensus        19 ~G~~v~~v~~~s~~~~aG-l~~GDiI~~ing~~v~--~~~~~~~~~~~~~~~~~~~l~v~R~g~   79 (87)
T d2i6va1          19 LGYRVSPGKDPVLFESIG-LQDGDMAVALNGLDLT--DPNVMNTLFQSMNEMTEMSLTVERDGQ   79 (87)
T ss_dssp             EEEEEEECSCHHHHHHTT-CCTTCEEEEETTEETT--CHHHHHHHHHTGGGCSEEEEEEEETTE
T ss_pred             EEEEEecCCCCCHHHHCC-CCCCCEEEEECCEEee--cHHHHHHHHHhhccccccEEEEEECCE
Confidence            478899999999999999 9999999999999999  6788888887642 4679999999864

>d1ky9a1 b.36.1.4 (A:260-353) Protease Do (DegP, HtrA), C-terminal domains {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Protease Do (DegP, HtrA), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=98.19  E-value=2e-07  Score=79.32  Aligned_cols=60  Identities=22%  Similarity=0.375  Sum_probs=51.3

Q ss_pred             CcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHh--cCCCeEEEEEEeCCcc
Q psy1156         418 GGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIIS--SGPLNMDLLISRTSLK  480 (671)
Q Consensus       418 ~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~--~~g~~V~L~V~R~~~~  480 (671)
                      .|++|..|.++|||+++| |++||+|++|||++|.+.  .++..++.  ..+..+.|+|.|++..
T Consensus        27 ~Gv~V~~V~~~spA~~aG-l~~gDvI~~i~g~~v~~~--~~l~~~l~~~~~g~~v~l~v~R~g~~   88 (94)
T d1ky9a1          27 RGAFVSQVLPNSSAAKAG-IKAGDVITSLNGKPISSF--AALRAQVGTMPVGSKLTLGLLRDGKQ   88 (94)
T ss_dssp             CSEECCCCTTCSSSTTTT-CCTTCEECBSSSSBCCSS--HHHHHHTTSSBTTCCCEEEEESSSCE
T ss_pred             CCcEEEECCCChhHHHhC-CCcccEEEEECCEEeCCH--HHHHHHHHhCCCCCEEEEEEEECCEE
Confidence            689999999999999999 999999999999999865  34455555  4578899999998764

>d2i6va1 b.36.1.5 (A:219-305) General secretion pathway protein C, EpsC {Vibrio cholerae [TaxId: 666]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: EpsC C-terminal domain-like
domain: General secretion pathway protein C, EpsC
species: Vibrio cholerae [TaxId: 666]

Probab=98.11  E-value=1.3e-06  Score=73.31  Aligned_cols=61  Identities=23%  Similarity=0.286  Sum_probs=51.5

Q ss_pred             CcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHh--cCCCeEEEEEEeCCccc
Q psy1156         418 GGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIIS--SGPLNMDLLISRTSLKK  481 (671)
Q Consensus       418 ~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~--~~g~~V~L~V~R~~~~~  481 (671)
                      .|+.|..+.++++|+++| |++||+|++|||.+|.+.  .++..++.  ..+..+.|+|.|+++..
T Consensus        19 ~G~~v~~v~~~s~~~~aG-l~~GDiI~~ing~~v~~~--~~~~~~~~~~~~~~~~~l~v~R~g~~~   81 (87)
T d2i6va1          19 LGYRVSPGKDPVLFESIG-LQDGDMAVALNGLDLTDP--NVMNTLFQSMNEMTEMSLTVERDGQQH   81 (87)
T ss_dssp             EEEEEEECSCHHHHHHTT-CCTTCEEEEETTEETTCH--HHHHHHHHTGGGCSEEEEEEEETTEEE
T ss_pred             EEEEEecCCCCCHHHHCC-CCCCCEEEEECCEEeecH--HHHHHHHHhhccccccEEEEEECCEEE
Confidence            688999999999999999 999999999999999864  44555554  46889999999988743

>d2hgaa1 b.36.1.6 (A:23-125) Uncharacterized protein MTH1368 {Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: MTH1368 C-terminal domain-like
domain: Uncharacterized protein MTH1368
species: Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.98  E-value=2.7e-06  Score=73.53  Aligned_cols=58  Identities=22%  Similarity=0.272  Sum_probs=50.0

Q ss_pred             CcEEEEEEcCCChhhhcCCCCCCCEEEccCCeeccCCCHHHHHHHHh--cCCCeEEEEEEeCCc
Q psy1156         418 GGFVVAHIVSGGLAEKEGCLELGDEIISVNGQRLRGLTMTQAKSIIS--SGPLNMDLLISRTSL  479 (671)
Q Consensus       418 ~GI~Vs~V~pGspA~raG~L~~GD~IlaVNG~~V~~~s~~~av~~L~--~~g~~V~L~V~R~~~  479 (671)
                      .|++|..|.+|+||+. + |++||+|++|||+.|.  +..+....|.  ..+..|.|+|.|.+.
T Consensus         3 ~Gv~V~~V~~~sPA~~-~-L~~GD~I~~ing~~v~--~~~~l~~~i~~~~~G~~v~l~v~R~~~   62 (103)
T d2hgaa1           3 DGVQIDSVVPGSPASK-V-LTPGLVIESINGMPTS--NLTTYSAALKTISVGEVINITTDQGTF   62 (103)
T ss_dssp             CCEEEEEECSSSGGGG-T-SCTTCEEEEETTEECS--SHHHHHHHHTTCCTTCEEEEEETTEEE
T ss_pred             CcEEEEEECCCChHHh-c-CCCCCEEEEECCEEcC--CHHHHHHHHhhCCCCCEEEEEEEECCE
Confidence            5899999999999985 7 9999999999999997  4677778876  358899999988643