Psyllid ID: psy11588

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------46
Protein Sequence
MVWTCCKCIAKYTSRSHLSLHLLSHSSDADEIKQELSCEQCGCSLDFHSALYTKDVYHCADCEQVFLDKFVLELHLKIEHKDNMFPKSHWFVCKMCGHRLFMRLSDLRRHMQDYHCEFHFDVESCAVSRLQDITFPCEECKELCVLSKYCIKHQDCSKAMSTPAPSSESVCIKHSNLIPKCHSCQKCEESFDNCNNLWSHMFIKHENSDFVCNLCPSHSKVLVRYVHSAVRHMKKHHKLQLSIPKAHNYFRKKTVIHVNKKVNYKCPDCSAILLSYGGFTSHLDIHSGEKDHCCHICKKVFLRYRNLVCHIKAVHEKVRDHQCSVCGKAFADITNMKVHMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHTAVNVVCSYCGNTYKNPKSLESHIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVHLKKD
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccccccccHHcccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
cccccccccccEccccHHHHHHHHcccccccccccccccHcccHHHHHHHHccccccccccccccEccccHHHHHHHHccccccccccccccccccccHHEccccHHHHHHHHcccccccEccccccccccccccccccccccEcccccHHHHEcHHcccccEccccHHHHHHHHccccccccccccccEEccccHHHHHHHHcccccccccccccccEcccccEEEEEEccccccccccccccccccHHHHHHHHccccccccccccccccEccccHHHHHHHHcccccccccccccccEccccHHHHHHHHHccccccEEccccccEEccHHHHHHHHHHHHccccEEccccccEEccHHHHHHHHHHHHccccccHHccccEccccHHHHHHHHHcccccccccccccccEccccHHHHHHHHccccccccccccccEEEcccHHHHHHHHccccc
Coil and Loop (DISEMBL)
mvwtcckciakytsrshLSLHllshssdadeIKQELsceqcgcsldfhsalytkdvyhcadceQVFLDKFVLELHLkiehkdnmfpkshWFVCKMCGHRLFMRLSDLRRHMQDYHCEFHFDVESCAVsrlqditfpceecKELCVlskycikhqdcskamstpapssesvcikhsnlipkchscqkceeSFDNCNNLWSHMFikhensdfvcnlcpshSKVLVRYVHSAVRHMKkhhklqlsipkahnyfrkKTVIHVNKkvnykcpdcsaillsyggftshldihsgekdhcchICKKVFLRYRNLVCHIKAVHEKVRDHQCSVCGKAFADITNMKVHMRIHTGEKKYVCETCGasfvqwgslnqhnlVHTAVNVVCSYcgntyknpkslESHIRYAHTIRQKSICDVCGKEFKMKKRLKEHMavhttdrpfvcdmcpsafKLKKHLQQHYKVHLKKD
Flexible Loop (DISEMBL)
MVWTCCKCIAkytsrshlSLHLLSHSSDADEIKQELSCEQCGCSLDFHSALYTKDVYHCADCEQVFLDKFVLELHLKIehkdnmfpKSHWFVCKMCGHRLFMRLSDLRRHMQDYHCEFHFDVESCAVSRLQDITFPCEECKELCVLSKYCIKHQDCSKAMSTPAPSSESVCIKHSNLIPKCHSCQKCEESFDNCNNLWSHMFIKHENSDFVCNLCPSHSKVLVRYVHSAVRHMKKhhklqlsipkahnyFRKKTVIHVNKKVNYKCPDCSAILLSYGGFTSHLDIHSGEKDHCCHICKKVFLRYRNLVCHIKAVhekvrdhqcSVCGKAFADITNMKVHMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHTAVNVVCSYCGNTYKNPKSLESHIRYAHTIRQKSICDVCGKEFKMKKRLKEHmavhttdrpfvCDMCPSAFKLKKHLQQHYKVHLKKD
Low Complexity Region (SEG)
MVWTCCKCIAKYTSRshlslhllshssDADEIKQELSCEQCGCSLDFHSALYTKDVYHCADCEQVFLDKFVLELHLKIEHKDNMFPKSHWFVCKMCGHRLFMRLSDLRRHMQDYHCEFHFDVESCAVSRLQDITFPCEECKELCVLSKYCIKHQDCSKAMSTPAPSSESVCIKHSNLIPKCHSCQKCEESFDNCNNLWSHMFIKHENSDFVCNLCPSHSKVLVRYVHSAVRHMKKHHKLQLSIPKAHNYFRKKTVIHVNKKVNYKCPDCSAILLSYGGFTSHLDIHSGEKDHCCHICKKVFLRYRNLVCHIKAVHEKVRDHQCSVCGKAFADITNMKVHMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHTAVNVVCSYCGNTYKNPKSLESHIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVHLKKD
Disordered region (IsUnstruct)
*VWTCCKCIAKYTSRSHLSLHLLSH*****EIKQELSCEQCGCSLDFHSALYTKDVYHCADCEQVFLDKFVLELHLKIEHKDNMFPKSHWFVCKMCGHRLFMRLSDLRRHMQDYHCEFHFDVESCAVSRLQDITFPCEECKELCVLSKYCIKHQDC*************VCIKHSNLIPKCHSCQKCEESFDNCNNLWSHMFIKHENSDFVCNLCPSHSKVLVRYVHSAVRHMKKHHKLQLSIPKAHNYFRKKTVIHVNKKVNYKCPDCSAILLSYGGFTSHLDIHSGEKDHCCHICKKVFLRYRNLVCHIKAVHEKVRDHQCSVCGKAFADITNMKVHMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHTAVNVVCSYCGNTYKNPKSLESHIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKV*****
Disordered Region (DISOPRED)
MVWTCCKCIAKYTSRSHLSLHLLSHSSDADEIKQELSCEQCGCSLDFHSALYTKDVYHCADCEQVFLDKFVLELHLKIEHKDNMFPKSHWFVCKMCGHRLFMRLSDLRRHMQDYHCEFHFDVESCAVSRLQDITFPCEECKELCVLSKYCIKHQDCSKAMSTPAPSSESVCIKHSNLIPKCHSCQKCEESFDNCNNLWSHMFIKHENSDFVCNLCPSHSKVLVRYVHSAVRHMKKHHKLQLSIPKAHNYFRKKTVIHVNKKVNYKCPDCSAILLSYGGFTSHLDIHSGEKDHCCHICKKVFLRYRNLVCHIKAVHEKVRDHQCSVCGKAFADITNMKVHMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHTAVNVVCSYCGNTYKNPKSLESHIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVHL***
Disordered Region (DISEMBL)
MVWTCCKCIAKYTSRSHLSLHLLSHSSDADEIKQELSCEQCGCSLDFHSALYTKDVYHCADCEQVFLDKFVLELHLKIEHKDNMFPKSHWFVCKMCGHRLFMRLSDLRRHMQDYHCEFHFDVESCAVSRLQDITFPCEECKELCVLSKYCIKH*****************CIKHSNLIPKCHSCQKCEESFDNCNNLWSHMFIKHENSDFVCNLCPSHSKVLVRYVHSAV*********QLSIPKAHNYFRKKTVIHVNKKVNYKCPDCSAILLSYGGFTSHLDIHSGEKDHCCHICKKVFLRYRNLVCHIKAVHEKVRDHQCSVCGKAFADITNMKVHMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHTAVNVVCSYCGNTYKNPKSLESHIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVHLKKD
Disordered Region (DISPRO)
MVWTCCKCIAKYTSRSHLSLHLLSHSSDADEIKQELSCEQCGCSLDFHSALYTKDVYHCADCEQVFLDKFVLELHLKIEHKDNMFPKSHWFVCKMCGHRLFMRLSDLRRHMQDYHCEFHFDVESCAVSRLQDITFPCEECKELCVLSKYCIKHQDCSKAMSTPAPSSESVCIKHSNLIPKCHSCQKCEESFDNCNNLWSHMFIKHENSDFVCNLCPSHSKVLVRYVHSAVRHMKKHHKLQLSIPKAHNYFRKKTVIHVNKKVNYKCPDCSAILLSYGGFTSHLDIHSGEKDHCCHICKKVFLRYRNLVCHIKAVHEKVRDHQCSVCGKAFADITNMKVHMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHTAVNVVCSYCGNTYKNPKSLESHIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVH****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVWTCCKCIAKYTSRSHLSLHLLSHSSDADEIKQELSCEQCGCSLDFHSALYTKDVYHCADCEQVFLDKFVLELHLKIEHKDNMFPKSHWFVCKMCGHRLFMRLSDLRRHMQDYHCEFHFDVESCAVSRLQDITFPCEECKELCVLSKYCIKHQDCSKAMSTPAPSSESVCIKHSNLIPKCHSCQKCEESFDNCNNLWSHMFIKHENSDFVCNLCPSHSKVLVRYVHSAVRHMKKHHKLQLSIPKAHNYFRKKTVIHVNKKVNYKCPDCSAILLSYGGFTSHLDIHSGEKDHCCHICKKVFLRYRNLVCHIKAVHEKVRDHQCSVCGKAFADITNMKVHMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHTAVNVVCSYCGNTYKNPKSLESHIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVHLKKD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	459	2.2.26 [Sep-21-2011]
Q80W31	679	Zinc finger protein 569 O	yes	N/A	0.910	0.615	0.284	3e-38
P17038	809	Zinc finger protein 43 OS	yes	N/A	0.958	0.543	0.273	1e-37
Q9H7R5	613	Zinc finger protein 665 O	no	N/A	0.858	0.642	0.274	5e-37
A2VDQ7	687	Zinc finger protein 420 O	no	N/A	0.893	0.596	0.267	1e-36
A8MQ14	1090	Zinc finger protein 850 O	no	N/A	0.930	0.391	0.271	2e-36
Q5R8X1	613	Zinc finger protein 665 O	no	N/A	0.858	0.642	0.270	2e-36
Q8NEP9	628	Zinc finger protein 555 O	no	N/A	0.864	0.632	0.269	2e-36
Q5MCW4	686	Zinc finger protein 569 O	no	N/A	0.910	0.609	0.278	4e-36
P51523	738	Zinc finger protein 84 OS	no	N/A	0.904	0.562	0.261	4e-36
Q8TAQ5	688	Zinc finger protein 420 O	no	N/A	0.893	0.595	0.265	5e-36

>sp|Q80W31|ZN569_MOUSE Zinc finger protein 569 OS=Mus musculus GN=Znf569 PE=2 SV=2

 Score =  160 bits (404), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 136/478 (28%), Positives = 214/478 (44%), Gaps = 60/478 (12%)

Query: 3   WTCCKCIAKYTSRSHLSLHLLSHSSDADEIKQELSCEQCGCSLDFHSALY-------TKD 55
           + C +C   +   S+L  H   H+ +   +     C++CG S    S L         + 
Sbjct: 235 YECSECGKTFIKMSNLIRHQRIHTGEKPYV-----CQECGKSFGQKSNLIDHEKIHTGEK 289

Query: 56  VYHCADCEQVFLDKFVLELHLKIEHKDNMFPKSHWFVCKMCGHRLFMRLSDLRRHMQDYH 115
            Y C +C + F  K  L  H K+   +  +       C  CG + F R++ L  HM+ + 
Sbjct: 290 PYKCNECGKSFSQKQSLVAHQKVHTGEKPY------ACNECG-KAFPRVASLALHMRGHT 342

Query: 116 CEFHFDVESCAVS-----------RLQDITFPCEECKELCVLSKYCIKHQDCSKAMSTPA 164
            E  +  + C  +           R+     P E C E             C KA S   
Sbjct: 343 GEKPYKCDKCGKAFSQFSMLIIHVRVHTGEKPYE-CGE-------------CGKAFS--Q 386

Query: 165 PSSESVCIKHSNLIPKCHSCQKCEESFDNCNNLWSHMFIKHENSDFVCNLCPSHSKVLVR 224
            S+ +V I+ S+   K + C++C +SF +  N  +H  I      + CN C    K  ++
Sbjct: 387 SSALTVHIR-SHTGEKPYECKECRKSFSHKKNFITHQKIHTREKPYGCNEC---GKAFIQ 442

Query: 225 YVHSAVRHMKKHHKLQLSIPKA-HNYFRKKTVIHVNKKVN-----YKCPDCSAILLSYGG 278
            + + VRH + H   +  + K     F +K+ +  ++K++     Y+C +C         
Sbjct: 443 -MSNLVRHQRIHTGEKPYLCKECGKAFSQKSNLIAHEKIHSGEKPYECNECGKAFSQKQN 501

Query: 279 FTSHLDIHSGEKDHCCHICKKVFLRYRNLVCHIKAVHEKVRDHQCSVCGKAFADITNMKV 338
           F +H  +H+GEK + C+ C K F +  +L  H+++ H   + ++C  CGKAF+  + + +
Sbjct: 502 FITHQKVHTGEKPYDCNKCGKAFSQIASLTLHLRS-HTGEKPYECEKCGKAFSQCSLLNL 560

Query: 339 HMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHTAVNVV-CSYCGNTYKNPKSLESHIRY 397
           HMR HTGEK YVC  CG +F Q  SL  H   HT      C+ CG  +    SL  HIR 
Sbjct: 561 HMRSHTGEKPYVCNECGKAFSQRTSLIVHMRGHTGEKPYECNKCGKAFSQSSSLTIHIR- 619

Query: 398 AHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVH 455
            HT  +   C  CGK F     L  HM  HT ++P+VC  C  AF  K HL +H ++H
Sbjct: 620 GHTGEKPFDCSNCGKAFSQISSLTLHMRKHTGEKPYVCIECGKAFSQKSHLVRHQRIH 677

May be involved in transcriptional regulation.
Mus musculus (taxid: 10090)

>sp|P17038|ZNF43_HUMAN Zinc finger protein 43 OS=Homo sapiens GN=ZNF43 PE=2 SV=4

 Score =  158 bits (399), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 135/494 (27%), Positives = 207/494 (41%), Gaps = 54/494 (10%)

Query: 2   VWTCCKCIAKYTSRSHLSLHLLSHSSDADEIKQELSCEQCGCSLDFHSALY-------TK 54
            + C +C   +   S+L+ H   H  +     +   CE+CG + ++ S L         +
Sbjct: 285 FYKCKECAKAFNQSSNLTEHKKIHPGE-----KPYKCEECGKAFNWPSTLTKHKRIHTGE 339

Query: 55  DVYHCADCEQVFLDKFVLELHLKIEHKDNMFPKSHWFVCKMCGHRLFMRLSDLRRHMQDY 114
             Y C +C + F     L  H +I H    F     + C  CG   F R S+L +H + +
Sbjct: 340 KPYTCEECGKAFNQFSNLTTHKRI-HTAEKF-----YKCTECG-EAFSRSSNLTKHKKIH 392

Query: 115 HCEFHFDVESCA-------------VSRLQDITFPCEECKELCVLSKYCIKHQDCSKAMS 161
             +  +  E C              ++   +  + CEEC +         KH   ++  +
Sbjct: 393 TEKKPYKCEECGKAFKWSSKLTEHKLTHTGEKPYKCEECGKAFNWPSTLTKH---NRIHT 449

Query: 162 TPAPSSESVCIK----HSNLIP--------KCHSCQKCEESFDNCNNLWSHMFIKHENSD 209
              P    VC K     SNL          K + C++C ++F   +NL  H  I  E   
Sbjct: 450 GEKPYKCEVCGKAFNQFSNLTTHKRIHTAEKPYKCEECGKAFSRSSNLTKHKKIHIEKKP 509

Query: 210 FVCNLCPSHSKVLVRYVHSAVRHMKKHHKLQLSIPKAHNYFR---KKTVIHVNKKVNYKC 266
           + C  C    K   +     + H  +         KA N+F    K   IH  +K  YKC
Sbjct: 510 YKCEECGKAFKWSSKLTEHKITHTGEKPYKCEECGKAFNHFSILTKHKRIHTGEKP-YKC 568

Query: 267 PDCSAILLSYGGFTSHLDIHSGEKDHCCHICKKVFLRYRNLVCHIKAVHEKVRDHQCSVC 326
            +C          T+H  IH+GEK + C  C K F +  NL  H K +H   + ++C  C
Sbjct: 569 EECGKAFTQSSNLTTHKKIHTGEKFYKCEECGKAFTQSSNLTTH-KKIHTGGKPYKCEEC 627

Query: 327 GKAFADITNMKVHMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHTAVNVV-CSYCGNTY 385
           GKAF   + +  H  IHT EK Y CE CG +F    +L +H ++HT      C  CG  +
Sbjct: 628 GKAFNQFSTLTKHKIIHTEEKPYKCEECGKAFKWSSTLTKHKIIHTGEKPYKCEECGKAF 687

Query: 386 KNPKSLESHIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMCPSAFKLK 445
           K   +L +H +  HT  +   C+ CGK F     L EH  +HT ++P+ C+ C  AF   
Sbjct: 688 KLSSTLSTH-KIIHTGEKPYKCEKCGKAFNRSSNLIEHKKIHTGEQPYKCEECGKAFNYS 746

Query: 446 KHLQQHYKVHLKKD 459
            HL  H ++H K+ 
Sbjct: 747 SHLNTHKRIHTKEQ 760

May be involved in transcriptional regulation.

Homo sapiens (taxid: 9606)

>sp|Q9H7R5|ZN665_HUMAN Zinc finger protein 665 OS=Homo sapiens GN=ZNF665 PE=2 SV=2

 Score =  155 bits (393), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 130/474 (27%), Positives = 201/474 (42%), Gaps = 80/474 (16%)

Query: 3   WTCCKCIAKYTSRSHLSLHLLSHSSDADEIKQELSCEQCG------CSLDFHSALYTKD- 55
           + C KC   +T RS+L++H + H+ +     +   C +CG       +L  H  ++T + 
Sbjct: 141 YQCNKCGKAFTVRSNLTIHQVIHTGE-----KPYKCNECGKVFSQPSNLAGHQRIHTGEK 195

Query: 56  VYHCADCEQVFLDKFVLELHLKIEHKDNMFPKSHWFVCKMCGHRLFMRLSDLRRHMQDYH 115
            Y C +C + F     L  H  I   +  +       CK CG + F + S L  H + + 
Sbjct: 196 PYKCNECGKAFRAHSKLTTHQVIHTGEKPYK------CKECG-KCFTQNSHLASHRRIHT 248

Query: 116 CEFHFDVESC--AVSRLQDIT-----------FPCEECKELCVLSKYCIKHQDCSKAMST 162
            E  +    C  A S    +T           + C EC ++   + Y  KH+        
Sbjct: 249 GEKPYKCNECGKAFSVRSSLTTHQTIHTGEKPYKCNECGKVFRHNSYLAKHRRI------ 302

Query: 163 PAPSSESVCIKHSNLIPKCHSCQKCEESFDNCNNLWSHMFIKHENSDFVCNLCPSHSKVL 222
                      H+   P  + C +C ++F   +NL  H  I      F CN C    KV 
Sbjct: 303 -----------HTGEKP--YKCNECGKAFSMHSNLTKHQIIHTGEKPFKCNEC---VKVF 346

Query: 223 VRYVHSAVRHMKKHHKLQLSIPKAHNYFRKKTVIHVNKKVNYKCPDCSAILLSYGGFTSH 282
            +Y H A                  N+ R    IH  +K  Y+C +C          T+H
Sbjct: 347 TQYSHLA------------------NHRR----IHTGEKP-YRCDECGKAFSVRSSLTTH 383

Query: 283 LDIHSGEKDHCCHICKKVFLRYRNLVCHIKAVHEKVRDHQCSVCGKAFADITNMKVHMRI 342
             IH+GEK + C+ C KVF +  +L  H + +H   + ++C  CGKAF+  + +  H R+
Sbjct: 384 QAIHTGEKPYKCNDCGKVFTQNSHLASH-RGIHSGEKPYKCDECGKAFSQTSQLARHWRV 442

Query: 343 HTGEKKYVCETCGASFVQWGSLNQHNLVHTAVNVV-CSYCGNTYKNPKSLESHIRYAHTI 401
           HTGEK Y C  CG +F    SL  H  +HT      C+ CG  +++   L  H R  HT 
Sbjct: 443 HTGEKPYKCNECGKAFSVHSSLTIHQTIHTGQKPYKCNDCGKVFRHNSYLAIHQR-IHTG 501

Query: 402 RQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVH 455
            +   C+ CGK F +   L  H  +HT ++P+ C+ C   F    HL  H ++H
Sbjct: 502 EKPYKCNECGKAFSVHSNLATHQVIHTGEKPYKCNECGKVFTQNSHLANHRRIH 555

May be involved in transcriptional regulation.

Homo sapiens (taxid: 9606)

>sp|A2VDQ7|ZN420_BOVIN Zinc finger protein 420 OS=Bos taurus GN=ZNF420 PE=2 SV=1

 Score =  154 bits (389), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 130/486 (26%), Positives = 203/486 (41%), Gaps = 76/486 (15%)

Query: 3   WTCCKCIAKYTSRSHLSLHLLSHSSDADEIKQELSCEQCG------CSLDFHSALYTKD- 55
           + C +C   +   SHL+ H   H+ +     +   C+QCG        L  H  L+T + 
Sbjct: 138 YKCKECGKAFRRASHLTQHQSIHTGE-----KPYECKQCGKAFSRDSQLSLHQRLHTGEK 192

Query: 56  VYHCADCEQVFLDKFVLELHLKIEHKDNMFPKSHWFVCKMCGHRLFMRLSDLRRHMQDYH 115
            Y C +C + F     L LH +I   +  +       C+ CG + F+R S L RH + + 
Sbjct: 193 PYACKECGKAFTQSSQLILHHRIHTGEKPYK------CEECG-KAFIRSSQLTRHQKVHT 245

Query: 116 CEFHFDVESCAVSRLQDIT-------------FPCEECKELCVLSKYCIKHQ-------- 154
            E  ++ + C  +  Q+               + C+EC+++       I H+        
Sbjct: 246 GEKPYECKECGKAFTQNSQLTLHQRLHTGEKLYECKECRKVFTQLSQLILHKRIHTGEKP 305

Query: 155 ----DCSKAMSTPAPSSESVCIKHSNLIPKCHSCQKCEESFDNCNNLWSHMFIKHENSDF 210
               +C KA    +  S+   I H+   P  + CQ+C ++F   + L  H  I      +
Sbjct: 306 YECKECGKAFICGSQLSQHQKI-HNGEKP--YECQECGKAFIRGSLLMQHQRIHTGEKPY 362

Query: 211 VCNLCPSHSKVLVRYVHSAVRHMKKHHKLQLSIPKAHNYFRKKTVIHVNKKVNYKCPDCS 270
            C  C    K  +R        + +H +                 IH N+K  Y+C +C 
Sbjct: 363 KCEEC---GKAFIR-----GSQLTQHQR-----------------IHTNEKP-YECKECG 396

Query: 271 AILLSYGGFTSHLDIHSGEKDHCCHICKKVFLRYRNLVCHIKAVHEKVRDHQCSVCGKAF 330
                    T H  IH+GEK + C  C K F R   L  H + +H   + ++C  CGK F
Sbjct: 397 KTFSHGSQLTQHQRIHTGEKPYQCKECGKAFNRGSLLTRHQR-IHTGEKPYECKECGKTF 455

Query: 331 ADITNMKVHMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHTAVNVV-CSYCGNTYKNPK 389
           +  + +  H RIHTGEK Y C+ CG SF++   L QH  +HT      C  C   +    
Sbjct: 456 SRGSELTQHERIHTGEKPYECKECGKSFIRGSQLTQHQRIHTGEKPYECKECRMAFTQSS 515

Query: 390 SLESHIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMCPSAFKLKKHLQ 449
            L  H R  HT  +  +C+ CGK F     L +H  +HT ++P+ C  C  AF     L 
Sbjct: 516 HLSQHQRL-HTGEKPYVCNECGKAFARGLLLIQHQRIHTGEKPYQCKECGKAFIRGSQLT 574

Query: 450 QHYKVH 455
           QH ++H
Sbjct: 575 QHQRIH 580

May be involved in transcriptional regulation.

Bos taurus (taxid: 9913)

>sp|A8MQ14|ZN850_HUMAN Zinc finger protein 850 OS=Homo sapiens GN=ZNF850 PE=3 SV=2

 Score =  154 bits (388), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 135/497 (27%), Positives = 210/497 (42%), Gaps = 70/497 (14%)

Query: 3    WTCCKCIAKYTSRSHLSLHLLSHSSDADEIKQELSCEQCG------CSLDFHSALYTKD- 55
            + C +C   +  R  L+ H   H+ +     +   C++CG        L  H  ++T + 
Sbjct: 617  YDCKECGKAFRLRLRLTQHQQIHTGE-----KPYQCQECGKAFVSVSGLTQHHRIHTGEK 671

Query: 56   VYHCADCEQVFLDKFVLELHLKIEHKDNMFPKSHWFVCKMCGHRLFMRLSDLRRHMQDYH 115
             Y C DC + F  +  L  H +I   +  +       CK CG + F   S L +H Q++ 
Sbjct: 672  PYECPDCGKAFRQRTYLNQHRRIHTGEKPYE------CKECG-KSFTFCSGLIQHQQNHT 724

Query: 116  CEFHFDVESCAVSRLQDIT-------------FPCEECKELCVLSKYCIKHQ-------- 154
             E  +D + C  S     T             + C+EC +        I+HQ        
Sbjct: 725  DEKPYDGKECGKSFTSHSTLIQHQQIHTGEKPYDCKECGKSFTSHSTLIQHQQIHTGEKL 784

Query: 155  ----DCSKAMSTPAPSSESVCIKHSNL--IPKCHSCQKCEESFDNCNNLWSHMFIKHENS 208
                +C K+ +     S S  I+H  L    K + C++C +SF   + L  H  +     
Sbjct: 785  YDCKECGKSFT-----SHSTLIQHQPLHTGEKPYHCKECGKSFTLRSALIQHRPVHTGEK 839

Query: 209  DFVCNLCP---SHSKVLVRY--VHSAVRHMKKHHKLQLSIPKAHNYFRKKTV----IHVN 259
             + C  C    +    L+ +  +H+     K +H  +     A   FR   +    IH  
Sbjct: 840  RYSCKECGKSFTSRSTLIEHQRIHTG---EKPYHCKECGKSFA---FRSAIIQHRRIHTG 893

Query: 260  KKVNYKCPDCSAILLSYGGFTSHLDIHSGEKDHCCHICKKVFLRYRNLVCHIKAVHEKVR 319
            +K  Y C +C          T H  IH+GEK + CH C K F+R+  L  H  ++H   +
Sbjct: 894  EKP-YDCKECGKAFRRRSKLTQHQRIHTGEKPYRCHECGKAFVRFSGLTKH-HSIHTGEK 951

Query: 320  DHQCSVCGKAFADITNMKVHMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHTAVNVV-C 378
             ++C  CGK+F   T++ +H RIHTG++ Y C+ CG SF     L +H   HT      C
Sbjct: 952  PYECKTCGKSFRQRTHLTLHQRIHTGDRPYECKECGKSFTCGSELIRHQRTHTGEKPYDC 1011

Query: 379  SYCGNTYKNPKSLESHIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMC 438
              CG  ++ P  L  H R  HT  +   C  CGK F     L  H +VHT ++P+ C  C
Sbjct: 1012 KECGKAFRCPSQLSQHKR-IHTGEKTYQCPECGKAFFYASGLSRHQSVHTGEKPYECKTC 1070

Query: 439  PSAFKLKKHLQQHYKVH 455
              AFK    L +H ++H
Sbjct: 1071 GKAFKQLTQLTRHQRIH 1087

May be involved in transcriptional regulation.

Homo sapiens (taxid: 9606)

>sp|Q5R8X1|ZN665_PONAB Zinc finger protein 665 OS=Pongo abelii GN=ZNF665 PE=2 SV=1

 Score =  154 bits (388), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 128/474 (27%), Positives = 200/474 (42%), Gaps = 80/474 (16%)

Query: 3   WTCCKCIAKYTSRSHLSLHLLSHSSDADEIKQELSCEQCG------CSLDFHSALYTKD- 55
           + C +C   +T RS+L++H + H+ +     +   C +CG       +L  H  ++T + 
Sbjct: 141 YRCNECGKAFTVRSNLTIHQVIHTGE-----KPYKCNECGKVFSQPSNLAGHQRIHTGEK 195

Query: 56  VYHCADCEQVFLDKFVLELHLKIEHKDNMFPKSHWFVCKMCGHRLFMRLSDLRRHMQDYH 115
            Y C +C + F     L  H  I   +  +       C  CG + F + S L  H + + 
Sbjct: 196 PYKCNECGKAFRAHSKLTTHQVIHTGEKPYK------CNECG-KCFTQNSHLASHRRIHT 248

Query: 116 CEFHFDVESC--AVSRLQDIT-----------FPCEECKELCVLSKYCIKHQDCSKAMST 162
            E  +    C  A S    +T           + C EC ++   + Y  KH+        
Sbjct: 249 GEKPYKCNECGKAFSVRSSLTTHQTIHTGEKPYKCNECGKVFRHNSYLTKHRRV------ 302

Query: 163 PAPSSESVCIKHSNLIPKCHSCQKCEESFDNCNNLWSHMFIKHENSDFVCNLCPSHSKVL 222
                      H+   P  + C +C ++F   +NL  H  I      F CN C    KV 
Sbjct: 303 -----------HTGEKP--YKCNECGKAFSMHSNLTKHQIIHTGEKPFKCNEC---VKVF 346

Query: 223 VRYVHSAVRHMKKHHKLQLSIPKAHNYFRKKTVIHVNKKVNYKCPDCSAILLSYGGFTSH 282
            +Y H A                  N+ R    IH  +K  Y+C +C          T+H
Sbjct: 347 TQYSHLA------------------NHRR----IHTGEKP-YRCDECGKAFSVRSSLTTH 383

Query: 283 LDIHSGEKDHCCHICKKVFLRYRNLVCHIKAVHEKVRDHQCSVCGKAFADITNMKVHMRI 342
             IH+GEK + C+ C KVF +  +L  H + +H   + ++C  CGKAF+  + +  H R+
Sbjct: 384 QAIHTGEKPYKCNDCGKVFTQNSHLASH-RGIHSGEKPYKCDECGKAFSQTSQLARHWRV 442

Query: 343 HTGEKKYVCETCGASFVQWGSLNQHNLVHTAVNVV-CSYCGNTYKNPKSLESHIRYAHTI 401
           HTGEK Y C  CG +F    SL  H  +HT      C+ CG  +++   L  H R  HT 
Sbjct: 443 HTGEKPYKCNECGKAFSVHSSLTTHQTIHTGQKPYKCNDCGKVFRHNSYLAVHQR-IHTG 501

Query: 402 RQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVH 455
            +   C+ CGK F +   L  H  +HT ++P+ C+ C   F    HL  H ++H
Sbjct: 502 EKPYKCNECGKAFSVHSNLATHQVIHTGEKPYKCNECGKVFTQNSHLANHRRIH 555

May be involved in transcriptional regulation.

Pongo abelii (taxid: 9601)

>sp|Q8NEP9|ZN555_HUMAN Zinc finger protein 555 OS=Homo sapiens GN=ZNF555 PE=2 SV=4

 Score =  154 bits (388), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 127/471 (26%), Positives = 202/471 (42%), Gaps = 74/471 (15%)

Query: 3   WTCCKCIAKYTSRSHLSLHLLSHSSDADEIKQELSCEQCG------CSLDFHSALYTKD- 55
           + C +C   Y+ RSHL +H+ +H+ +   +     C+ CG       SL+ H  ++T + 
Sbjct: 172 YQCQECGQAYSCRSHLRMHVRTHNGERPYV-----CKLCGKTFPRTSSLNRHVRIHTAEK 226

Query: 56  VYHCADCEQVFLDKFVLELHLKIEHKDNMFPKSHWFVCKMCGHRLFMRLSDLRRHMQDYH 115
            Y C  C + F+D   L  HL+    +  +       CK CG + F   S  RRH     
Sbjct: 227 TYECKQCGKAFIDFSSLTSHLRSHTGEKPYK------CKECG-KAFSYSSTFRRH----- 274

Query: 116 CEFHFDVESCAVSRLQDITFPCEECKELCVLSKYCIKHQDCSKAMSTPAPSSESVCIKHS 175
                      ++   +  + C+EC E    S    +H                  I H+
Sbjct: 275 ----------TITHTGEKPYKCKECAEAFSYSSTFRRHM-----------------ISHT 307

Query: 176 NLIPKCHSCQKCEESFDNCNNLWSHMFIKHENSDFVCNLCPSHSKVLVRYVHSAVRHMKK 235
              P  H C++C E+F   +    HM        + C  C    K  + Y+ S  RH + 
Sbjct: 308 GEKP--HKCKECGEAFSYSSAFRRHMITHTGEKPYECKQC---GKTFI-YLQSFRRHERI 361

Query: 236 HHKLQ----------LSIPKAHNYFRKKTVIHVNKKVNYKCPDCSAILLSYGGFTSHLDI 285
           H   +             P++   FR+    H  +K  Y+C  C         F  H+ +
Sbjct: 362 HTGEKPYECKQCGKTFIYPQS---FRRHERTHGGEKP-YECNQCGKAFSHPSSFRGHMRV 417

Query: 286 HSGEKDHCCHICKKVFLRYRNLVCHIKAVHEKVRDHQCSVCGKAFADITNMKVHMRIHTG 345
           H+GEK + C  C K F    +L  H++  H + + ++C  CGKAF+     + H+R+H  
Sbjct: 418 HTGEKPYECKQCGKTFNWPISLRKHMR-THTREKPYECKQCGKAFSLSACFREHVRMHPE 476

Query: 346 EKKYVCETCGASFVQWGSLNQHNLVHTAVNVV-CSYCGNTYKNPKSLESHIRYAHTIRQK 404
           +K Y C+ CG +F    SL +H   HTA  +  C  CG  +  P+ L+ H+R  HT+ + 
Sbjct: 477 DKSYECKLCGKAFYCHISLQKHMRRHTAEKLYKCKQCGKAFSWPELLQQHVR-THTVEKP 535

Query: 405 SICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVH 455
             C  CGK FK    L  HM +HT ++P+ C  C  AF     L++H ++H
Sbjct: 536 YECKECGKVFKWPSSLPIHMRLHTGEKPYQCKHCGKAFNCSSSLRRHVRIH 586

May be involved in transcriptional regulation.

Homo sapiens (taxid: 9606)

>sp|Q5MCW4|ZN569_HUMAN Zinc finger protein 569 OS=Homo sapiens GN=ZNF569 PE=2 SV=1

 Score =  152 bits (385), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 133/478 (27%), Positives = 209/478 (43%), Gaps = 60/478 (12%)

Query: 3   WTCCKCIAKYTSRSHLSLHLLSHSSDADEIKQELSCEQCGCSLDFHSALY-------TKD 55
           + C +C   +   S+L  H   H+ +     +  +C++C  S    S L         + 
Sbjct: 242 YKCNECGKAFIKMSNLIRHQRIHTGE-----KPYACKECEKSFSQKSNLIDHEKIHTGEK 296

Query: 56  VYHCADCEQVFLDKFVLELHLKIEHKDNMFPKSHWFVCKMCGHRLFMRLSDLRRHMQDYH 115
            Y C +C + F  K  L  H K+   +  +       C  CG + F R++ L  HM+ + 
Sbjct: 297 PYECNECGKAFSQKQSLIAHQKVHTGEKPY------ACNECG-KAFPRIASLALHMRSHT 349

Query: 116 CEFHFDVESCAVS-----------RLQDITFPCEECKELCVLSKYCIKHQDCSKAMSTPA 164
            E  +  + C  +           R+     P E C E             C KA S   
Sbjct: 350 GEKPYKCDKCGKAFSQFSMLIIHVRIHTGEKPYE-CNE-------------CGKAFSQ-- 393

Query: 165 PSSESVCIKHSNLIPKCHSCQKCEESFDNCNNLWSHMFIKHENSDFVCNLCPSHSKVLVR 224
            SS       S+   K + C++C ++F +  N  +H  I      + CN C    K  ++
Sbjct: 394 -SSALTVHMRSHTGEKPYECKECRKAFSHKKNFITHQKIHTREKPYECNEC---GKAFIQ 449

Query: 225 YVHSAVRHMKKHHKLQLSIPKA-HNYFRKKTVIHVNKKVN-----YKCPDCSAILLSYGG 278
            + + VRH + H   +  I K     F +K+ +  ++K++     Y+C +C         
Sbjct: 450 -MSNLVRHQRIHTGEKPYICKECGKAFSQKSNLIAHEKIHSGEKPYECNECGKAFSQKQN 508

Query: 279 FTSHLDIHSGEKDHCCHICKKVFLRYRNLVCHIKAVHEKVRDHQCSVCGKAFADITNMKV 338
           F +H  +H+GEK + C+ C K F +  +L  H+++ H   + ++C  CGKAF+  + + +
Sbjct: 509 FITHQKVHTGEKPYDCNECGKAFSQIASLTLHLRS-HTGEKPYECDKCGKAFSQCSLLNL 567

Query: 339 HMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHTAVNVV-CSYCGNTYKNPKSLESHIRY 397
           HMR HTGEK YVC  CG +F Q  SL  H   HT      C+ CG  +    SL  HIR 
Sbjct: 568 HMRSHTGEKPYVCNECGKAFSQRTSLIVHMRGHTGEKPYECNKCGKAFSQSSSLTIHIR- 626

Query: 398 AHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVH 455
            HT  +   C  CGK F     L  HM  HT ++P+ C  C  AF  K HL +H ++H
Sbjct: 627 GHTGEKPFDCSKCGKAFSQISSLTLHMRKHTGEKPYHCIECGKAFSQKSHLVRHQRIH 684

May be involved in transcriptional regulation.

Homo sapiens (taxid: 9606)

>sp|P51523|ZNF84_HUMAN Zinc finger protein 84 OS=Homo sapiens GN=ZNF84 PE=1 SV=2

 Score =  152 bits (385), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 127/485 (26%), Positives = 195/485 (40%), Gaps = 70/485 (14%)

Query: 1   MVWTCCKCIAKYTSRSHLSLHLLSHSSDADEIKQELSCEQCGCSLDFHSALYT------- 53
           + + C  C   +  +S    H  +H+ +     +  +C QCG +    S L +       
Sbjct: 233 IAFGCGNCGKTFPQKSQFITHHRTHTGE-----KPYNCSQCGKAFSQKSQLTSHQRTHTG 287

Query: 54  KDVYHCADCEQVFLDKFVLELHLKIEHKDNMFPKSHWFVCKMCGHRLFMRLSDLRRHMQD 113
           +  Y C +C + F  K  L  H +    +  +       C  CG R F   S+L  H + 
Sbjct: 288 EKPYECGECGKAFSRKSHLISHWRTHTGEKPY------GCNECG-RAFSEKSNLINHQRI 340

Query: 114 YHCEFHFDVESC--AVSRLQDIT-----------FPCEECKELCVLSKYCIKHQ------ 154
           +  E  F+   C  A SR   +            F C +C++        I+HQ      
Sbjct: 341 HTGEKPFECRECGKAFSRKSQLVTHHRTHTGTKPFGCSDCRKAFFEKSELIRHQTIHTGE 400

Query: 155 ---DCSKAMSTPAPSSESVCIKHSNLIPKCHSCQKCEESFDNCNNLWSHMFIKHENSDFV 211
              +CS+        S  +  + ++   K H C +C ++F   ++L SH         F+
Sbjct: 401 KPYECSECRKAFRERSSLINHQRTHTGEKPHGCIQCGKAFSQKSHLISHQMTHTGEKPFI 460

Query: 212 CNLCPSHSKVLVRYVHSAVRHMKKHHKLQLSIPKAHNYFRKKTVIHVNKKVNYKCPDCSA 271
           C+ C    K   R     VRH + H                        +  Y+C +C  
Sbjct: 461 CSKC---GKAFSRKSQ-LVRHQRTH----------------------TGEKPYECSECGK 494

Query: 272 ILLSYGGFTSHLDIHSGEKDHCCHICKKVFLRYRNLVCHIKAVHEKVRDHQCSVCGKAFA 331
                   T+H  IH+GEK + C  C K F +  +L+ H +  H   + ++CS CGKAF 
Sbjct: 495 AFSEKLSLTNHQRIHTGEKPYVCSECGKAFCQKSHLISHQR-THTGEKPYECSECGKAFG 553

Query: 332 DITNMKVHMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHTAVNVV-CSYCGNTYKNPKS 390
           + +++  H R HTGEK Y C  C  +F Q   LN H  +HT      CS C   +     
Sbjct: 554 EKSSLATHQRTHTGEKPYECRDCEKAFSQKSQLNTHQRIHTGEKPYECSLCRKAFFEKSE 613

Query: 391 LESHIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMCPSAFKLKKHLQQ 450
           L  H+R  HT  +   C+ C K F+ K  L  H  +HT ++PF C  C  AF  K HL  
Sbjct: 614 LIRHLR-THTGEKPYECNECRKAFREKSSLINHQRIHTGEKPFECSECGKAFSRKSHLIP 672

Query: 451 HYKVH 455
           H + H
Sbjct: 673 HQRTH 677

May be involved in transcriptional regulation.

Homo sapiens (taxid: 9606)

>sp|Q8TAQ5|ZN420_HUMAN Zinc finger protein 420 OS=Homo sapiens GN=ZNF420 PE=2 SV=1

 Score =  152 bits (384), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 129/486 (26%), Positives = 202/486 (41%), Gaps = 76/486 (15%)

Query: 3   WTCCKCIAKYTSRSHLSLHLLSHSSDADEIKQELSCEQCG------CSLDFHSALYTKD- 55
           + C +C   +   SHL+ H   H+ +         C+QCG        L  H  L+T + 
Sbjct: 139 YKCKECGKAFRRASHLTQHQSIHTGEKP-----YECKQCGKAFSRDSQLSLHQRLHTGEK 193

Query: 56  VYHCADCEQVFLDKFVLELHLKIEHKDNMFPKSHWFVCKMCGHRLFMRLSDLRRHMQDYH 115
            Y C +C + F     L LH +I   +  +       C+ CG + F+R S L RH + + 
Sbjct: 194 PYACKECGKAFTQSSQLILHHRIHTGEKPYK------CEECG-KAFIRSSQLTRHQKVHT 246

Query: 116 CEFHFDVESCAVSRLQDIT-------------FPCEECKELCVLSKYCIKHQ-------- 154
            E  ++ + C  +  Q+               + C+EC+++       I H+        
Sbjct: 247 GEKPYECKECGKAFTQNSQLTLHQRLHTGEKLYECKECRKVFTQLSQLILHKRIHTGEKP 306

Query: 155 ----DCSKAMSTPAPSSESVCIKHSNLIPKCHSCQKCEESFDNCNNLWSHMFIKHENSDF 210
               +C KA    +  S+   I H+   P  + C++C  +F   + L  H  I      +
Sbjct: 307 YECKECGKAFICGSQLSQHQKI-HNGEKP--YECKECGRAFIRGSLLMQHQRIHTGEKPY 363

Query: 211 VCNLCPSHSKVLVRYVHSAVRHMKKHHKLQLSIPKAHNYFRKKTVIHVNKKVNYKCPDCS 270
            C  C    K  +R        + +H +                 IH N+K  Y+C +C 
Sbjct: 364 KCEEC---GKAFIR-----GSQLTQHQR-----------------IHTNEKP-YECKECG 397

Query: 271 AILLSYGGFTSHLDIHSGEKDHCCHICKKVFLRYRNLVCHIKAVHEKVRDHQCSVCGKAF 330
            +       T H  IH+GEK + C  C K F R   L  H + +H   + ++C  CGK F
Sbjct: 398 KMFSHGSQLTQHQRIHTGEKPYQCKECGKAFNRGSLLTRHQR-IHTGEKPYECKECGKTF 456

Query: 331 ADITNMKVHMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHTAVNVV-CSYCGNTYKNPK 389
           +  + +  H RIHTGEK Y C+ CG SF++   L QH  +HT      C  C   +    
Sbjct: 457 SRGSELTQHERIHTGEKPYECKECGKSFIRGSQLTQHQRIHTGEKPYECKECRMAFTQSS 516

Query: 390 SLESHIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMCPSAFKLKKHLQ 449
            L  H R  HT  +  +C+ CGK F     L +H  +HT ++P+ C  C  AF     L 
Sbjct: 517 HLSQHQRL-HTGEKPYVCNECGKAFARGLLLIQHQRIHTGEKPYQCKECGKAFIRGSQLT 575

Query: 450 QHYKVH 455
           QH ++H
Sbjct: 576 QHQRIH 581

May be involved in transcriptional regulation.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	459
326667465	2943	PREDICTED: hypothetical protein LOC57172	0.941	0.146	0.280	1e-40
326666369	936	PREDICTED: zinc finger protein 850, part	0.886	0.434	0.292	2e-40
326667289	1202	PREDICTED: zinc finger protein 729-like	0.928	0.354	0.278	3e-40
326667110	1395	PREDICTED: zinc finger protein 729-like,	0.886	0.291	0.280	4e-40
326676493	689	PREDICTED: zinc finger protein 845-like	0.915	0.609	0.287	5e-40
326680530	786	PREDICTED: zinc finger protein 91-like [	0.915	0.534	0.279	6e-40
326668043	445	PREDICTED: zinc finger protein 135-like,	0.825	0.851	0.279	8e-40
326666903	573	PREDICTED: zinc finger protein 252-like	0.884	0.708	0.277	8e-40
326666993	657	PREDICTED: zinc finger protein 721-like	0.906	0.633	0.277	1e-39
326680879	710	PREDICTED: zinc finger protein 721-like,	0.893	0.577	0.286	6e-39

>gi|326667465|ref|XP_700431.5| PREDICTED: hypothetical protein LOC571721 [Danio rerio]

 Score =  173 bits (439), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 132/470 (28%), Positives = 214/470 (45%), Gaps = 38/470 (8%)

Query: 3    WTCCKCIAKYTSRSHLSLHLLSHSSDADEIKQELSCEQCG------CSLDFHSALYTK-D 55
            ++C +C   +  + +  +H+  H+ +     +   C+QCG       SLD H +++T   
Sbjct: 994  FSCPQCGKSFIDKQNFKVHMRVHTGE-----KPYQCQQCGKGFSLKASLDCHMSIHTGLK 1048

Query: 56   VYHCADCEQVFLDKFVLELHLKIEHKDNMFPKSHWFVCKMCGHRLFMRLSDLRRHMQDYH 115
             + C  C + F  +  L+LH +    +        F C+ CG + F +  +L+ HM+ + 
Sbjct: 1049 PFVCQQCGKSFHQRPKLKLHRRTHTGEK------PFTCQHCG-KSFAQKQNLKVHMRVHT 1101

Query: 116  CEFHFDVESCAVSRLQDITFPCEECKELCVLSKYCIKHQDCSKAMSTPAPSSESVCIKHS 175
             E  +  + C  S  Q       E   +    +     Q C K+ S        + I H+
Sbjct: 1102 RETPYTCQYCGRSFNQKTNL---EIHRIIHTGEKPFTCQQCGKSFSQKQTLKVHMRI-HT 1157

Query: 176  NLIPKCHSCQKCEESFDNCNNLWSHMFIKHENSDFVCNLCPSH-SKVLVRYVHSAVRHMK 234
               P   SC  C ++F +  NL  HM I   +  ++C +C  + S+     VH  +   +
Sbjct: 1158 GEKP--FSCHHCGKTFTDKQNLMVHMRIHTGDKPYICTVCGKNFSQKPSLDVHVGIHTGE 1215

Query: 235  KHHKLQLSIPKAHNYFRKKTVIHV-----NKKVNYKCPDCSAILLSYGGFTSHLDIHSGE 289
            K ++ Q    +    F +K  + V     N    Y+C  C            H+ IH+GE
Sbjct: 1216 KPYQCQ----QCGKSFNRKQNLQVHMSIHNGDKPYQCQQCGKSFNRKQNLQVHMRIHTGE 1271

Query: 290  KDHCCHICKKVFLRYRNLVCHIKAVHEKVRDHQCSVCGKAFADITNMKVHMRIHTGEKKY 349
            K   CH C K F + RNL  H + +H   R + C  CG++F    N+KVHMRIHTG+K Y
Sbjct: 1272 KPFSCHQCGKTFCQKRNLAIH-RRIHTGERPYTCQQCGRSFTQKQNLKVHMRIHTGDKPY 1330

Query: 350  VCETCGASFVQWGSLNQHNLVHTAVNVV-CSYCGNTYKNPKSLESHIRYAHTIRQKSICD 408
             C+ CG SF+    L  H  +HT      C  C  ++   ++L+ H+R  HT  +   C 
Sbjct: 1331 QCQECGKSFIDKQHLKVHMRIHTGDKPYQCQQCERSFDRKENLKVHMR-IHTGEKPFTCH 1389

Query: 409  VCGKEFKMKKRLKEHMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVHLKK 458
             CGK    KK L+ HM +HT D+P+ C  C  +F  K++ Q H ++H K+
Sbjct: 1390 QCGKSLNRKKNLQVHMRIHTGDKPYQCQQCGKSFNRKQNFQVHMRIHTKE 1439

Source: Danio rerio

Species: Danio rerio

Genus: Danio

Family: Cyprinidae

Order: Cypriniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|326666369|ref|XP_003198252.1| PREDICTED: zinc finger protein 850, partial [Danio rerio]

 Score =  172 bits (437), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 135/461 (29%), Positives = 197/461 (42%), Gaps = 54/461 (11%)

Query: 3   WTCCKCIAKYTSRSHLSLHLLSHSSDADEIKQELSCEQCGCS------LDFHSALYTKD- 55
           +TC +C   ++  SHLSLH+  HS +     +   C QCG S      L+ H  ++T + 
Sbjct: 84  YTCTQCGKSFSQSSHLSLHMQMHSGE-----KPFRCIQCGKSFSQSSHLNEHMKIHTGEK 138

Query: 56  VYHCADCEQVFLDKFVLELHLKIEHKDNMFPKSHWFVCKMCGHRLFMRLSDLRRHMQDYH 115
            + C  C + F     L LH KI   +        F C  CG + F R S L  HM+ + 
Sbjct: 139 PFTCTQCGKNFRQSSSLNLHRKIHTGEK------PFSCTQCG-KSFSRSSTLNEHMRIHT 191

Query: 116 CEFHFDVESCAVSRLQDITFPCEECKELCVLSKYCIKHQDCSKAMSTPAPSSESVCIKHS 175
            E  F    C  S                V    C    +C K   T         I H+
Sbjct: 192 GEKPFTCTRCGRSFSGSSQLNQHMKIHTGVREYICF---ECEKTFITAGDMKRHQRI-HT 247

Query: 176 NLIPKCHSCQKCEESFDNCNNLWSHMFIKHENSDFVCNLCPSHSKVLVRYVHSAVRHMKK 235
              P  + C  C++SF + +NL  HM I      + C  C    K L R   S   HM+ 
Sbjct: 248 GEKP--YKCAHCDKSFSHSSNLKKHMRIHTGEKPYTCTQC---GKSLGRKC-SLKLHMR- 300

Query: 236 HHKLQLSIPKAHNYFRKKTVIHVNKKVNYKCPDCSAILLSYGGFTSHLDIHSGEKDHCCH 295
                               IH  +K  + C  C    +       H+  H+GEK   C 
Sbjct: 301 --------------------IHTGEKP-FTCTLCGKSYIQSSNLNQHMRSHTGEKPFTCT 339

Query: 296 ICKKVFLRYRNLVCHIKAVHEKVRDHQCSVCGKAFADITNMKVHMRIHTGEKKYVCETCG 355
           +C K +++  NL  H+++ H   +   C+ CGK++   +N+  H++IHTGEK Y C  CG
Sbjct: 340 LCGKSYIQSSNLNQHMRS-HTGEKPFTCTQCGKSYIQSSNLNQHLKIHTGEKPYTCTLCG 398

Query: 356 ASFVQWGSLNQHNLVHTAVN-VVCSYCGNTYKNPKSLESHIRYAHTIRQKSICDVCGKEF 414
            S++Q  SLN+H + HT      C+ CG +++    L  H+R  HT  +   C  CGK F
Sbjct: 399 KSYIQSSSLNEHMMSHTGEKPFTCTQCGKSFRRSSHLNKHMRI-HTGERPYTCTQCGKSF 457

Query: 415 KMKKRLKEHMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVH 455
                L  HM  HT +RPF C +C  ++    HL QH ++H
Sbjct: 458 SQSSHLSLHMMSHTGERPFKCTLCEKSYSQSSHLNQHMRIH 498

Source: Danio rerio

Species: Danio rerio

Genus: Danio

Family: Cyprinidae

Order: Cypriniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|326667289|ref|XP_003198555.1| PREDICTED: zinc finger protein 729-like [Danio rerio]

 Score =  172 bits (436), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 139/500 (27%), Positives = 216/500 (43%), Gaps = 74/500 (14%)

Query: 2   VWTCCKCIAKYTSRSHLSLHLLSHSSDADEIKQELSCEQCG------CSLDFHSALYTKD 55
           ++TC +C   +++ ++L+ H+  H+ +     +  +C QCG       SL+ H  ++T +
Sbjct: 9   LFTCTQCGKSFSNSANLNQHMRIHTGE-----KPFTCSQCGKSFSQSSSLNLHMRIHTGE 63

Query: 56  -VYHCADCEQVFLDKFVLELHLKIEHKDNMFPKSHWFVCKMCGHRLFMRLSDLRRHMQDY 114
             + C+ C + F     L LH++I   +        F C  CG + F + S+L  HM  +
Sbjct: 64  KPFTCSQCGKSFSQSSSLNLHMRIHTGEK------PFTCTQCG-KSFSQSSNLNLHMMIH 116

Query: 115 HCEFHFDVESCAVSRLQ-------------DITFPCEECKELCVLSKYCIKHQ------- 154
             E  F    C  S  Q             +  F C +C +    S    +HQ       
Sbjct: 117 TGEKPFTCTQCGKSFSQSSNLNIHMRNHTGEKPFTCLQCGKSFSRSTSLNRHQRVHTGEK 176

Query: 155 -----DCSK--AMSTPAPSSESVCIKHSNLIPKCHSCQKCEESFDNCNNLWSHMFIKHEN 207
                 CSK  A S    + E +   H+   P   +C +C +SF   ++L  HM I    
Sbjct: 177 PYKCSQCSKRFARSGTLKTHERI---HTGEKP--FTCTQCGKSFSKSSSLNQHMRIHTGK 231

Query: 208 SDFVCNLCP-SHSKVLVRYVHSAVRHMKKHHKLQLSIPKA----------HNYFRKKTVI 256
             F C  C  S S+      H  +   +K        P A           +Y  K   I
Sbjct: 232 KPFTCTQCGKSFSQSSSLNYHMMIHAGEK--------PSACSQCGKSFSCSSYLNKHMRI 283

Query: 257 HVNKKVNYKCPDCSAILLSYGGFTSHLDIHSGEKDHCCHICKKVFLRYRNLVCHIKAVHE 316
           H  +K  + C  C            H+ IH+GEK   C  C K F R  +L  H++ +H 
Sbjct: 284 HTGEKP-FSCTQCGKSFSQSSSLNHHIRIHTGEKPFTCTQCGKSFRRSSHLNHHMR-IHT 341

Query: 317 KVRDHQCSVCGKAFADITNMKVHMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHTAVN- 375
           + +   C+ CGK+F   ++++ HMRIHTGEK + C  CG SF+Q   LN+H  +HT    
Sbjct: 342 EEKPFSCTQCGKSFRRSSSLRQHMRIHTGEKPFTCTQCGKSFIQSSQLNRHMRIHTGEKP 401

Query: 376 VVCSYCGNTYKNPKSLESHIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVC 435
             C+ CG ++        H+R  HT  +   C  CGK F+    LKEHM +H+ ++PF C
Sbjct: 402 FTCTQCGKSFSRSSYFNLHMRI-HTGEKLFSCTQCGKSFRCSSSLKEHMRIHSGEKPFTC 460

Query: 436 DMCPSAFKLKKHLQQHYKVH 455
             C  +F    HL +H  +H
Sbjct: 461 TQCGKSFSRSSHLNEHMMIH 480

Source: Danio rerio

Species: Danio rerio

Genus: Danio

Family: Cyprinidae

Order: Cypriniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|326667110|ref|XP_003198489.1| PREDICTED: zinc finger protein 729-like, partial [Danio rerio]

 Score =  172 bits (436), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 137/488 (28%), Positives = 208/488 (42%), Gaps = 81/488 (16%)

Query: 3    WTCCKCIAKYTSRSHLSLHLLSHSSDADEIKQELSCEQCGCSLDFHSALY-------TKD 55
            + C +C   +   SHL+ H++ H+ +     +  +C QCG S    S+LY        + 
Sbjct: 906  FRCTQCGKSFNCSSHLNEHMMIHTGE-----KPFTCTQCGKSFSKSSSLYRHMKIHTGEK 960

Query: 56   VYHCADCEQVFLDKFVLELHLKIEHKDNMFPKSHWFVCKMCGHRLFMRLSDLRRHMQDYH 115
             Y C +C + F     L LH++I   +        F C  CG+  F + S L RHM+ + 
Sbjct: 961  PYTCTECRKSFSQSSSLNLHMRIHTGEK------PFTCTECGNS-FSKSSSLYRHMKIHT 1013

Query: 116  CEFHFDVESCAVSRLQ-------------DITFPCEECKELCVLSKYCIKH--------- 153
             E  F    C  S +Q             +  F C +C +  + S +  +H         
Sbjct: 1014 GEKPFTCTECGKSFIQSSCLNVHMRIHTGEKPFTCTQCGKSFIHSSHLNQHLMIHTGEKP 1073

Query: 154  ---QDCSKAMSTPAPSSESVCIKHSNL--IPKCHSCQKCEESFDNCNNLWSHMFIKHENS 208
                 C K+ S      +S   KH  +    + + C +CE++F     L  H  I     
Sbjct: 1074 FKCPQCGKSFS------QSYLKKHMKIHTGVREYMCLECEKTFITAAELKRHKRIHTGEK 1127

Query: 209  DFVCNLCPSHSKVLVRYVHSAVRHMKKHHKLQLSIPKAHNYFRKKTVIHVNKKVNYKCPD 268
             + C+ C        R+ HS    +K H +                 IH  +K+ YKC  
Sbjct: 1128 PYKCSQCSK------RFAHSGT--LKTHER-----------------IHTGEKL-YKCSH 1161

Query: 269  CSAILLSYGGFTSHLDIHSGEKDHCCHICKKVFLRYRNLVCHIKAVHEKVRDHQCSVCGK 328
            CS           H+ IH+GEK   C  C+K F    +L  H++ +H   +   C+ CGK
Sbjct: 1162 CSKSFNQSSNINLHMRIHTGEKPFTCTQCRKSFSLLSSLNQHMR-IHTGEKPFTCTQCGK 1220

Query: 329  AFADITNMKVHMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHTAVN-VVCSYCGNTYKN 387
            +F+  +++  HMRIHTGEK + C  CG SF    S NQH  +HT      C+ CG ++  
Sbjct: 1221 SFSLSSSLNRHMRIHTGEKPFTCTQCGKSFSLSSSFNQHMRMHTGEKPFTCTQCGKSFSQ 1280

Query: 388  PKSLESHIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMCPSAFKLKKH 447
               L +H+R  HT  +  IC  CGK F     L  HM +HT ++PF C  C  +F     
Sbjct: 1281 SSHLYNHMRI-HTGEKPFICTQCGKSFSYSSHLNHHMRIHTGEKPFTCTQCGKSFNCSSQ 1339

Query: 448  LQQHYKVH 455
            L QH ++H
Sbjct: 1340 LNQHMRIH 1347

Source: Danio rerio

Species: Danio rerio

Genus: Danio

Family: Cyprinidae

Order: Cypriniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|326676493|ref|XP_689690.3| PREDICTED: zinc finger protein 845-like [Danio rerio]

 Score =  172 bits (435), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 137/476 (28%), Positives = 221/476 (46%), Gaps = 56/476 (11%)

Query: 3   WTCCKCIAKYTSRSHLSLHLLSHSSDADEIKQELSCEQCGC------SLDFHSALYTKD- 55
           +TC +C   +T +  L  HL  H+ +     +  +C  CG       SL+ H  ++T + 
Sbjct: 93  FTCPECDKCFTMKHSLESHLKIHTGE-----KPFTCPDCGKKFRIKHSLEGHMRIHTGEK 147

Query: 56  VYHCADCEQVFLDKFVLELHLKIEHKDNMFPKSHWFVCKMCGHRLFMRLSDLRRHMQDYH 115
            Y C +C + F +K +L+ HL I   +        + C  CG R F     L  H++ + 
Sbjct: 148 PYKCRECGKNFREKQILDKHLTIHTGEK------PYSCPECG-RNFRVKKCLENHIKTHT 200

Query: 116 CEFHFDVESCAVSRLQDITFPCEECKELCVLSKYCIKHQ--------DCSKAMSTPAPSS 167
            E  +  + C +S      F  ++      L ++   H         +C ++        
Sbjct: 201 GEKPYTCQDCGIS------FAVKQ-----NLKRHMRIHTGEKPYSCPECGRSFRVKQDLK 249

Query: 168 ESVCIKHSNLIPKCHSCQKCEESFDNCNNLWSHMFIKHENSDFVCNLCPSHSKVLVRYVH 227
             V I H+   P   SCQ+C +SF     L SHM I      F C+ C  +     R   
Sbjct: 250 SHVRI-HTGEKP--FSCQQCGKSFSENKTLESHMRIHTGEKPFTCSQCGKN----FRRKQ 302

Query: 228 SAVRHMKKHHKLQ-LSIPK-AHNYFRKKTV-----IHVNKKVNYKCPDCSAILLSYGGFT 280
           +   HM+ H   +  S P+   +Y  +K++      H  +K  + C  C           
Sbjct: 303 NLKSHMRLHTGDKPYSCPQCGKSYNEQKSLENHIRTHTGEKP-FACDQCGKTFTQQSTLR 361

Query: 281 SHLDIHSGEKDHCCHICKKVFLRYRNLVCHIKAVHEKVRDHQCSVCGKAFADITNMKVHM 340
            H+ IH+GEK + C  C K F   +NL  H++ +H   +   CS CGK+F    ++K+H+
Sbjct: 362 GHIKIHTGEKPYTCQECGKSFTEKQNLKRHMR-IHTGEKPFTCSHCGKSFRVSKDLKIHV 420

Query: 341 RIHTGEKKYVCETCGASFVQWGSLNQHNLVHTAVN-VVCSYCGNTYKNPKSLESHIRYAH 399
           RIHTGEK + C+ CG SF +   L  H  +HT     VCS+CG  ++  ++LESHIR  H
Sbjct: 421 RIHTGEKPFSCQQCGKSFSENKKLTSHMRIHTGEKPFVCSHCGKRFRGKQNLESHIRL-H 479

Query: 400 TIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVH 455
           T  ++  C  CGK +  +K L+ H+  HT ++PF CD C  +F+ ++ L+ H ++H
Sbjct: 480 TGEKRYTCPQCGKSYNEQKSLENHIRSHTGEKPFACDQCGKSFRQQRILKGHIRIH 535

Source: Danio rerio

Species: Danio rerio

Genus: Danio

Family: Cyprinidae

Order: Cypriniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|326680530|ref|XP_002661836.2| PREDICTED: zinc finger protein 91-like [Danio rerio]

 Score =  171 bits (434), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 138/493 (27%), Positives = 207/493 (41%), Gaps = 73/493 (14%)

Query: 3   WTCCKCIAKYTSRSHLSLHLLSHSSDADEIKQELSCEQCGCSLDFHSAL-------YTKD 55
           +TC +C   +T+++ L  H+  H+          +C+QCG SL    ++         ++
Sbjct: 278 FTCAQCGKSFTTKTSLMNHMDGHTGTIV-----FTCDQCGKSLTRKDSMKQHMKTHSGEN 332

Query: 56  VYHCADCEQVFLDKFVLELHLKI---EHKDNMFPKSHWFVCKMCGHRLFMRLSDLRRHMQ 112
            + C++C + F  K  L  HLK+   E        S  F C  CG + F + S+L +HM+
Sbjct: 333 RFRCSECGKGFKCKRSLSTHLKLHNGERSSKNGQDSKLFTCTQCG-KSFNQSSNLNQHMR 391

Query: 113 DYHCEFHFDVESCAVSRLQDIT-------------FPCEECKELCVLSKYCIKH------ 153
            +  E  F    C  S  Q  +             F C +C +      Y  KH      
Sbjct: 392 IHTGEKPFTCTQCGKSFSQSASLNQHMRIHTEEKPFTCTQCGKSFSQISYLAKHIRIHTG 451

Query: 154 ------QDCSKAMSTPAPSSESVCIKHSNLIPKCHSCQKCEESFDNCNNLWSHMFIKHEN 207
                   C K+ S  +  ++ + I H+   P   +C +C +SF   +NL  HM      
Sbjct: 452 DKPFTCTQCGKSFSQLSSLNQHMRI-HTGEKP--FTCPQCGKSFSQSSNLNIHMRNHTGE 508

Query: 208 SDFVCNLCPSHSKVLVRYVHSAVRHMKKHHKLQLSIPKAHNYFRKKTVIHVNKKVNYKCP 267
             F C  C      L     S  RH +                     IH  +K  Y C 
Sbjct: 509 KPFTCLQCGKSFSQLT----SLNRHRR---------------------IHTGEKP-YTCT 542

Query: 268 DCSAILLSYGGFTSHLDIHSGEKDHCCHICKKVFLRYRNLVCHIKAVHEKVRDHQCSVCG 327
            C            H+ IH+GEK   C  C K F R  +L  H+  +H   +   C+ CG
Sbjct: 543 RCGKCFSQSSNLNQHMRIHTGEKPFTCTQCGKSFSRSSHLNEHM-MIHTGEKPFTCTQCG 601

Query: 328 KAFADITNMKVHMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHTAVN-VVCSYCGNTYK 386
           K+F    ++K+HM IHTGE  + C  CG SF Q  SLNQH  +HT  N   C+ CG ++ 
Sbjct: 602 KSFGRNLDLKIHMMIHTGENPFRCTHCGKSFSQSSSLNQHKKIHTRENPFTCTQCGKSFN 661

Query: 387 NPKSLESHIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMCPSAFKLKK 446
              SL +H +  HT  +   C  CGK F     L EHM +HT ++PF C  C   F    
Sbjct: 662 RSSSLNNH-KTIHTREKPFSCTQCGKTFNYSSHLYEHMRIHTGEKPFTCTQCGKNFNQSS 720

Query: 447 HLQQHYKVHLKKD 459
           +L +H ++H +++
Sbjct: 721 NLNRHMRIHTREN 733

Source: Danio rerio

Species: Danio rerio

Genus: Danio

Family: Cyprinidae

Order: Cypriniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|326668043|ref|XP_003198718.1| PREDICTED: zinc finger protein 135-like, partial [Danio rerio]

 Score =  171 bits (433), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 123/440 (27%), Positives = 196/440 (44%), Gaps = 61/440 (13%)

Query: 33  KQELSCEQCGCS------LDFHSALYTKD-VYHCADCEQVFLDKFVLELHLKIEHKDNMF 85
           K+  +C QCG S      L+ H  ++T +  + C  CE+ F     L LH++I      +
Sbjct: 10  KKPFTCTQCGNSFNSSSHLNQHMRIHTGEKPFTCTQCEKSFSQSSNLNLHMRI------Y 63

Query: 86  PKSHWFVCKMCGHRLFMRLSDLRRHMQDYHCEFHFDVESCAVSRLQDITFPCEECKELCV 145
            +   F C  CG + F + S+L RHM+ +  E  F    C  S ++  +           
Sbjct: 64  TREKPFTCTQCG-KNFNQSSNLNRHMRIHTGEKPFTCTQCGTSFIRSSS----------- 111

Query: 146 LSKYCIKHQDCSKAMSTPAPSSESVCIKHSNLIPKCHSCQKCEESFDNCNNLWSHMFIKH 205
           L+ + + H                          K  +C +C  SF+  ++L  HM I  
Sbjct: 112 LNLHIMSHNG-----------------------EKPFTCTQCGRSFNRSSHLNRHMMIHT 148

Query: 206 ENSDFVCNLCP-SHSKVLVRYVHSAVRHMKKHHKLQLSIPKAHNYFRKKTVIHVNKKVN- 263
               F C  C  S S+     +H  +   +K      + P+    F + + ++++ +V+ 
Sbjct: 149 GEKPFTCTQCGMSFSQSSNLNLHMRIHTGEK----PFACPQCGMSFSQSSNLNLHMRVHT 204

Query: 264 ----YKCPDCSAILLSYGGFTSHLDIHSGEKDHCCHICKKVFLRYRNLVCHIKAVHEKVR 319
               + CP C     S      H+ IH+GEK   C+ C K F +  NL  H++ +H   +
Sbjct: 205 GEKPFTCPQCGKSFNSSSHLNRHMRIHTGEKPFTCNQCGKSFNQPSNLNLHMR-IHTGEK 263

Query: 320 DHQCSVCGKAFADITNMKVHMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHTAVN-VVC 378
              C+ CGK F   +++  HMRIHTGEK + C  CG SF    +LN+H  +HT      C
Sbjct: 264 PFTCTQCGKNFIHSSHLNEHMRIHTGEKPFTCTQCGRSFSLSSTLNRHMRIHTGEKPFTC 323

Query: 379 SYCGNTYKNPKSLESHIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMC 438
           + CG ++    SL  H+R  HT      C  CGK F +   L +HM +HT ++PF C  C
Sbjct: 324 TQCGKSFSQSASLNRHMRI-HTGESPFTCTQCGKSFSLSSYLNKHMRIHTGEKPFTCTQC 382

Query: 439 PSAFKLKKHLQQHYKVHLKK 458
             +F+   HL QH  +H ++
Sbjct: 383 GKSFRHSSHLNQHMMIHNRE 402

Source: Danio rerio

Species: Danio rerio

Genus: Danio

Family: Cyprinidae

Order: Cypriniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|326666903|ref|XP_003198412.1| PREDICTED: zinc finger protein 252-like [Danio rerio]

 Score =  171 bits (433), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 128/462 (27%), Positives = 201/462 (43%), Gaps = 56/462 (12%)

Query: 3   WTCCKCIAKYTSRSHLSLHLLSHSSDADEIKQELSCEQCGCSLDFHSALY-------TKD 55
           +TC +C   +   SHL  H+  H+ +     + ++C QCG S    S+LY        + 
Sbjct: 122 FTCTQCWKSFNRSSHLDQHIRIHTGE-----KPITCTQCGKSFRQSSSLYKHMRIHTGEK 176

Query: 56  VYHCADCEQVFLDKFVLELHLKIEHKDNMFPKSHWFVCKMCGHRLFMRLSDLRRHMQDYH 115
            + C  C + F       LH++I     + P    F C  CG + F + S L +HM+ + 
Sbjct: 177 PFTCTQCGKSFSQSSSFNLHMRIH--TGVKP----FTCTQCG-KSFRQASSLNKHMRTHT 229

Query: 116 CEFHFDVESCAVSRLQDITFPCEECKELCV-LSKYCIKHQDCSKAMSTPAPSSESVCIKH 174
            E  F    C  S  +  T      + + +   +  I    C K+    +  ++ + I H
Sbjct: 230 GEKPFTCTQCGKSFNRSSTLN----QHIRIHTGEKPITCTQCGKSFRQASSLNKHMRI-H 284

Query: 175 SNLIPKCHSCQKCEESFDNCNNLWSHMFIKHENSDFVCNLCPSHSKVLVRYVHSAVRHMK 234
           +   P   +C +C +SF   +N   HM I      F C  C    K  ++  +  + HM+
Sbjct: 285 TGEKP--FTCTQCGKSFSQSSNFNLHMRIHTGEKPFTCTQC---GKSFIQSSNFNL-HMR 338

Query: 235 KHHKLQLSIPKAHNYFRKKTVIHVNKKVNYKCPDCSAILLSYGGFTSHLDIHSGEKDHCC 294
                                IH  +K  + C  C            H+  H+GEK   C
Sbjct: 339 ---------------------IHTGEKP-FTCTQCGKSFRQASSLNKHMRTHTGEKPFTC 376

Query: 295 HICKKVFLRYRNLVCHIKAVHEKVRDHQCSVCGKAFADITNMKVHMRIHTGEKKYVCETC 354
             C K F R   L  HI+ +H + +   C+ CG++F   +++  HMRIHTGEK + C  C
Sbjct: 377 TQCGKSFNRSSRLDQHIR-IHTREKPFTCTECGRSFNRSSHLNHHMRIHTGEKPFTCTQC 435

Query: 355 GASFVQWGSLNQHNLVHTAVN-VVCSYCGNTYKNPKSLESHIRYAHTIRQKSICDVCGKE 413
           G SF +  +LNQH  +HT    + CS CG +++   SL  H+R  HT  +   C  CGK 
Sbjct: 436 GKSFNRSSTLNQHIRIHTGEKPITCSQCGKSFRQSSSLYKHMRI-HTGEKPFTCTQCGKS 494

Query: 414 FKMKKRLKEHMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVH 455
           F        HM +HT ++PF C +C  +F    HL +H ++H
Sbjct: 495 FSQSSNFNLHMRIHTGEKPFTCTLCGKSFNKSSHLNRHMRIH 536

Source: Danio rerio

Species: Danio rerio

Genus: Danio

Family: Cyprinidae

Order: Cypriniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|326666993|ref|XP_003198445.1| PREDICTED: zinc finger protein 721-like [Danio rerio]

 Score =  170 bits (431), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 133/480 (27%), Positives = 208/480 (43%), Gaps = 64/480 (13%)

Query: 3   WTCCKCIAKYTSRSHLSLHLLSHSSDADEIKQELSCEQCG------CSLDFHSALYTKD- 55
           +TC +C   ++  SHL+ H+  H+ +     +  +C QCG       SL  H  ++T + 
Sbjct: 150 FTCTQCGKSFSQSSHLNYHMKIHTGE-----KPFTCTQCGKSFRQSSSLTLHMMIHTGEK 204

Query: 56  VYHCADCEQVFLDKFVLELHLKIEHKDNMFPKSHWFVCKMCGHRLFMRLSDLRRHMQDYH 115
            + C+ C + F     L  H++I   +        F C  CG + F R SDL +HM+ ++
Sbjct: 205 PFICSQCGKSFSQSSYLNEHMRIHTGEK------PFTCTQCG-KSFNRSSDLYQHMRIHN 257

Query: 116 CEFHFDVESCAVS--RLQDI-----------TFPCEECKELCVLSKYCIKHQDCSKAMST 162
            E  F    C  S  R  ++            F C +C +    S    +H         
Sbjct: 258 GEKPFTCTQCGKSFNRSSNLYKHMRTHNGEKPFTCVQCGKSFTFSSTLFQHMRI------ 311

Query: 163 PAPSSESVCIKHSNLIPKCHSCQKCEESFDNCNNLWSHMFIKHENSDFVCNLCPSHSKVL 222
                      H+   P  ++C +C +SF+  + L+ HM I      F C  C    K  
Sbjct: 312 -----------HTGEKP--YTCSQCGKSFNCSSRLYQHMRIHTGEKPFTCPQC---GKSF 355

Query: 223 VRYVHSAVRHMKKH-HKLQLSIPKAHNYFRKKTVIHVNKKVN-----YKCPDCSAILLSY 276
            +  H   +HM+ H  +   S  +    F +K  + V+ +V+     Y C  C       
Sbjct: 356 SQSSH-LNQHMRIHTGEKPFSCKQCGKSFSQKPNLDVHMRVHTGEKPYTCEQCGKSFNQK 414

Query: 277 GGFTSHLDIHSGEKDHCCHICKKVFLRYRNLVCHIKAVHEKVRDHQCSVCGKAFADITNM 336
             F +H+ IH+GE+ + C  C K F   RNL  +++ +H   +   C  C K+F   +++
Sbjct: 415 QSFKTHMRIHTGERPYTCQQCGKSFRHARNLDVYMR-IHTGEKPFSCKQCRKSFRHKSSL 473

Query: 337 KVHMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHTAVN-VVCSYCGNTYKNPKSLESHI 395
           K+HMRIHTGEK + C  CG SF    SL  H  +HT      C+ CG  +        H+
Sbjct: 474 KIHMRIHTGEKPFTCTQCGKSFSLSSSLYNHMRIHTGEKPFTCTQCGKNFGYTSHFNHHM 533

Query: 396 RYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVH 455
           R  HT  +   C  CGK F     L +HM +HT ++PF C  C  +F    HL  H ++H
Sbjct: 534 R-IHTGEKPFTCTQCGKSFSCSTNLYQHMMIHTGEKPFTCTQCGKSFSQSSHLNLHMRIH 592

Source: Danio rerio

Species: Danio rerio

Genus: Danio

Family: Cyprinidae

Order: Cypriniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|326680879|ref|XP_003201653.1| PREDICTED: zinc finger protein 721-like, partial [Danio rerio]

 Score =  168 bits (425), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 139/486 (28%), Positives = 205/486 (42%), Gaps = 76/486 (15%)

Query: 3   WTCCKCIAKYTSRSHLSLHLLSHSSDADEIKQELSCEQCGCS------LDFHSALYTKD- 55
           +TC +C   ++  S L+LH+  H+ +     +  +C QCG S      L+ H   +T + 
Sbjct: 243 FTCSQCGKSFSQSSSLNLHMRIHTGE-----KPFTCTQCGKSFSQSSILNIHMRNHTGEK 297

Query: 56  VYHCADCEQVFLDKFVLELHLKIEHKDNMFPKSHWFVCKMCGHRLFMRLSDLRRHMQDYH 115
            + C  C + F     L  H++I   +N+F       C  CG + F   ++L  HM+ + 
Sbjct: 298 PFTCLQCGKSFSQSTYLNQHMRIHTGENLF------TCTHCG-KSFSNSANLNLHMRIHT 350

Query: 116 CEFHFDVESCAVSRLQ-------------DITFPCEECKELCVLSKYCIKH--------- 153
            E  F    C  S  Q             +  F C +C +    S Y   H         
Sbjct: 351 GEKPFTCTQCGKSFSQSSNLNIHMRIHTGEKPFTCSQCGKSFSQSPYLNHHMRIHTGEKP 410

Query: 154 ---QDCSKAMSTPAPSSESVCIKHSNLIPKCHSCQKCEESFDNCNNLWSHMFIKHENSDF 210
                C K+ S  +  +  + I H+   P   +C +C  SF   +NL  HM        F
Sbjct: 411 FTCSQCGKSFSKSSNLNLHLRI-HTGEKP--FTCTQCGTSFSQSSNLNIHMRNHTGEKPF 467

Query: 211 VCNLCPSHSKVLVRYVHSAVRHMKKHHKLQLSIPKAHNYFRKKTVIHVNKKVNYKCPDCS 270
            C  C    K   R   S  RHM                     +IH  +K  + C  C 
Sbjct: 468 TCLQC---GKSFSRST-SLNRHM---------------------MIHTGEK-EFMCLKCE 501

Query: 271 AILLSYGGFTSHLDIHSGEKDHCCHICKKVFLRYRNLVCHIKAVHEKVRDHQCSVCGKAF 330
              ++      H  +H+GEK + C  C K F    N   H++ +H   +   C  CGK+F
Sbjct: 502 NTFITAAELKRHQRVHTGEKPYKCSQCSKSFYHAGNFAAHMR-IHTGEKPFSCKQCGKSF 560

Query: 331 ADITNMKVHMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHTAVNV-VCSYCGNTYKNPK 389
               N+ VHMR+HTGEK Y CE CG SF Q  S N H  +HT      C  C  ++ N +
Sbjct: 561 CHKPNLDVHMRVHTGEKPYTCEQCGQSFSQKQSFNTHMRIHTGKRPCTCQQCEKSFYNAR 620

Query: 390 SLESHIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMCPSAFKLKKHLQ 449
           SL +H+R  HT  +   C +CGK F +K  L  HM VHT ++P  C+ C  +F  K+ L 
Sbjct: 621 SLAAHMR-THTGERPFSCILCGKSFSLKLTLIAHMRVHTREKPHTCEQCGKSFGQKQDLD 679

Query: 450 QHYKVH 455
            H ++H
Sbjct: 680 IHMRIH 685

Source: Danio rerio

Species: Danio rerio

Genus: Danio

Family: Cyprinidae

Order: Cypriniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	459
ZFIN|ZDB-GENE-110914-160	1003	si:dkey-240n22.7 "si:dkey-240n	0.871	0.398	0.317	1.6e-50
UNIPROTKB|P17038	809	ZNF43 "Zinc finger protein 43"	0.864	0.490	0.301	6.5e-49
ZFIN|ZDB-GENE-120709-57	609	si:dkey-16p19.10 "si:dkey-16p1	0.934	0.704	0.282	6e-48
ZFIN|ZDB-GENE-110913-145	656	si:ch211-209n20.58 "si:ch211-2	0.880	0.615	0.290	9.8e-48
UNIPROTKB|F1M7V0	682	Zfp74 "Protein Zfp74" [Rattus	0.869	0.585	0.296	2.6e-47
UNIPROTKB|A6NN14	1173	ZNF729 "Zinc finger protein 72	0.884	0.346	0.296	3.3e-47
ZFIN|ZDB-GENE-070705-76	646	si:ch211-165i18.1 "si:ch211-16	0.925	0.657	0.287	4.2e-47
MGI|MGI:107784	679	Zfp74 "zinc finger protein 74"	0.869	0.587	0.298	4.2e-47
UNIPROTKB|F1RKN0	686	ZNF569 "Uncharacterized protei	0.871	0.583	0.290	5.4e-47
UNIPROTKB|F1MH55	685	ZNF569 "Uncharacterized protei	0.871	0.583	0.290	5.4e-47

ZFIN|ZDB-GENE-110914-160 si:dkey-240n22.7 "si:dkey-240n22.7" [Danio rerio (taxid:7955)]

 Score = 534 (193.0 bits), Expect = 1.6e-50, P = 1.6e-50
 Identities = 138/435 (31%), Positives = 210/435 (48%)

Query:    37 SCEQCGCS------LDFHSALYTKDV-YHCADCEQVFLDKFVLELHLKIEHKDNMFPKSH 89
             +C+QCG S      L  H  ++T D  Y C +C + F+DK  L++H++I   D   P   
Sbjct:   232 TCQQCGKSFTQKQNLKVHMRIHTGDKPYQCQECGKSFIDKQHLKVHMRIHTGDK--P--- 286

Query:    90 WFVCKMCGHRLFMRLSDLRRHMQDYHCEFHFDVESCAVS--RLQDITFPCEECKELCVLS 147
              + C+ CG + F R  + + HM+ +  E  F    C  S  R Q++       +      
Sbjct:   287 -YQCQQCG-KSFNRKQNFQVHMRIHTKEKPFSCHQCGRSFNRKQNLKV---HMRVHTGDK 341

Query:   148 KYCIKHQDCSKAMSTPAPSSESVCIKHSNLIPKCHSCQKCEESFDNCNNLWSHMFIKHEN 207
              Y  + Q C K+ S  A + ++    HS L     +CQ+C +SF     L  HM I    
Sbjct:   342 PY--QCQQCGKSFSQKA-TLDAHMRTHSGL--NAFTCQQCGKSFGQKQKLQLHMRIHSRE 396

Query:   208 SDFVCNLC-PSHSKVLVRYVHSAVRHMKKHHKLQLSIPKAHNYFRKKTVIHV---NKKVN 263
               + C  C  S S+      H  V H K+     L   K  +  ++   +HV   + +  
Sbjct:   397 KPYKCQHCGESFSQKAHLTGHERV-HTKEKPYTCLQCGKCFS-LKQNLKLHVRIHSGEKP 454

Query:   264 YKCPDCSAILLSYGGFTSHLDIHSGEKDHCCHICKKVFLRYRNLVCHIKAVHEKVRDHQC 323
             Y+C  C          T H  IH+GEK   C  C K F +  NL  H++ VH + R + C
Sbjct:   455 YQCQHCGKSFNQRSHLTGHTRIHTGEKPFSCQQCGKSFAQQTNLKVHMR-VHTRERPYTC 513

Query:   324 SVCGKAFADITNMKVHMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHTAVN-VVCSYCG 382
               CGK F    N+KVHMR+HTGEK YVC+ CG SF Q  +L+ H   H+ VN  +C  CG
Sbjct:   514 QDCGKRFFHKQNLKVHMRVHTGEKPYVCQQCGKSFSQKTNLDAHMGTHSVVNPFICQQCG 573

Query:   383 NTYKNPKSLESHIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMCP--S 440
              ++ + ++L+ H+R  HT  +   C  CGK F+    LK H+ +HT ++P+ C  C    
Sbjct:   574 KSFGHKQNLKIHMR-VHTGEKPYSCGQCGKSFRQYPSLKIHVRIHTGEKPYTCQCCDCGK 632

Query:   441 AFKLKKHLQQHYKVH 455
             +F  K++L+ H ++H
Sbjct:   633 SFNYKQNLEVHRRIH 647

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

UNIPROTKB|P17038 ZNF43 "Zinc finger protein 43" [Homo sapiens (taxid:9606)]

 Score = 515 (186.3 bits), Expect = 6.5e-49, P = 6.5e-49
 Identities = 131/434 (30%), Positives = 202/434 (46%)

Query:    38 CEQCGCSLDF------HSALYTKDV-YHCADCEQVFLDKFVLELHLKIEHKDNMFPKSHW 90
             CE+CG + ++      H  ++T +  Y C +C + F     L  H +I H    F K   
Sbjct:   316 CEECGKAFNWPSTLTKHKRIHTGEKPYTCEECGKAFNQFSNLTTHKRI-HTAEKFYK--- 371

Query:    91 FVCKMCGHRLFMRLSDLRRHMQDYHCEFHFDVESCAVSRLQDITFPCEECKELCVLSKYC 150
               C  CG   F R S+L +H + +  +  +  E C   +    +    E K L    +  
Sbjct:   372 --CTECGEA-FSRSSNLTKHKKIHTEKKPYKCEECG--KAFKWSSKLTEHK-LTHTGEKP 425

Query:   151 IKHQDCSKAMSTPAPSSESVCIKHSNLIP--KCHSCQKCEESFDNCNNLWSHMFIKHENS 208
              K ++C KA + P     S   KH+ +    K + C+ C ++F+  +NL +H  I     
Sbjct:   426 YKCEECGKAFNWP-----STLTKHNRIHTGEKPYKCEVCGKAFNQFSNLTTHKRIHTAEK 480

Query:   209 DFVCNLCP---SHSKVLVRYVHSAVRHMKKHHKLQLSIPKAHNYFRKKT---VIHVNKKV 262
              + C  C    S S  L +  H  +   KK +K +    KA  +  K T   + H  +K 
Sbjct:   481 PYKCEECGKAFSRSSNLTK--HKKIHIEKKPYKCE-ECGKAFKWSSKLTEHKITHTGEKP 537

Query:   263 NYKCPDCSAILLSYGGFTSHLDIHSGEKDHCCHICKKVFLRYRNLVCHIKAVHEKVRDHQ 322
              YKC +C      +   T H  IH+GEK + C  C K F +  NL  H K +H   + ++
Sbjct:   538 -YKCEECGKAFNHFSILTKHKRIHTGEKPYKCEECGKAFTQSSNLTTH-KKIHTGEKFYK 595

Query:   323 CSVCGKAFADITNMKVHMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHTAVNVV-CSYC 381
             C  CGKAF   +N+  H +IHTG K Y CE CG +F Q+ +L +H ++HT      C  C
Sbjct:   596 CEECGKAFTQSSNLTTHKKIHTGGKPYKCEECGKAFNQFSTLTKHKIIHTEEKPYKCEEC 655

Query:   382 GNTYKNPKSLESHIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMCPSA 441
             G  +K   +L  H +  HT  +   C+ CGK FK+   L  H  +HT ++P+ C+ C  A
Sbjct:   656 GKAFKWSSTLTKH-KIIHTGEKPYKCEECGKAFKLSSTLSTHKIIHTGEKPYKCEKCGKA 714

Query:   442 FKLKKHLQQHYKVH 455
             F    +L +H K+H
Sbjct:   715 FNRSSNLIEHKKIH 728

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

ZFIN|ZDB-GENE-120709-57 si:dkey-16p19.10 "si:dkey-16p19.10" [Danio rerio (taxid:7955)]

 Score = 501 (181.4 bits), Expect = 6.0e-48, P = 6.0e-48
 Identities = 134/474 (28%), Positives = 214/474 (45%)

Query:     3 WTCCKCIAKYTSRXXXXXXXXXXXXDADEIKQELSCEQCG----CS--LDFHSALYTKDV 56
             +TC +C   ++S             +     +  +C QCG    CS  L+ H   +T++ 
Sbjct:   113 FTCAQCGKSFSSSSNLYQHMRIHTGE-----KPFTCTQCGKSFNCSSNLNQHMRNHTREK 167

Query:    57 -YHCADCEQVFLDKFVLELHLKIEHKDNMFPKSHWFVCKMCGHRLFMRLSDLRRHMQDYH 115
              + C  C + F     L LH++I  ++   P    F C  CG R + + S L+RHM   H
Sbjct:   168 PFRCTQCMKSFNCSSDLNLHMRIHTEEK--P----FTCTQCG-RNYSQSSSLKRHMMS-H 219

Query:   116 CEFH--FDVESCAVSRLQDITFPCEECKELCVLSK-Y-CIKHQDCSKAMSTPAPSSESVC 171
              E    +    C   R   +T   +  K +    K Y C +   C K+++  +     + 
Sbjct:   220 TEEKPPYKCSHCD-KRFNQLT-DLKTQKRIHTGEKPYSCTQ---CGKSLAIKSKLKIHLR 274

Query:   172 IKHSNLIPKCHSCQKCEESFDNCNNLWSHMFIKHENSDFVCNLCPSHSKVLVRYVHSAVR 231
             I H+   P   +C +C +SF +  NL  HM I      F C  C      L     S  +
Sbjct:   275 I-HTGEKP--FTCTQCGKSFSHSANLNQHMRIHTGERPFKCTPCRKSFSQL----SSFKQ 327

Query:   232 HMKKHH-KLQLSIPKAHNYFRKKTVIHVNKKVN-----YKCPDCSAILLSYGGFTSHLDI 285
             HM+ H  +   + P+    F + + ++++ +++     + CP C            H+ I
Sbjct:   328 HMRIHTGEKPFTCPQCGKSFSQSSNLNLHIRIHTGEKPFTCPQCGKSFSQSSNLNLHMRI 387

Query:   286 HSGEKDHCCHICKKVFLRYRNLVCHIKAVHEKVRDHQCSVCGKAFADITNMKVHMRIHTG 345
             H+GEK   C  C K F +  NL  H++ +H   +   C+ CGK+F+ ++++  HM IHTG
Sbjct:   388 HTGEKPFTCPQCGKSFSQSSNLNLHMR-IHTGDKPFTCTQCGKSFSHLSHLNQHMMIHTG 446

Query:   346 EKKYVCETCGASFVQWGSLNQHNLVHTAVN-VVCSYCGNTYKNPKSLESHIRYAHTIRQK 404
             EK + C  CG SF Q  SLNQH  +HT      C  CG ++    SL  H++  HT  + 
Sbjct:   447 EKPFTCTQCGKSFSQSSSLNQHMRIHTGEKPFTCPQCGKSFSKSSSLYRHMKI-HTGEKP 505

Query:   405 SICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVHLKK 458
               C  CGK F +   L  HM +HT ++PF C  C  +F    +L +H ++H  K
Sbjct:   506 FTCPQCGKSFSLSSSLYRHMKIHTGEKPFTCTKCGKSFNQSSYLNKHIRIHTGK 559

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

ZFIN|ZDB-GENE-110913-145 si:ch211-209n20.58 "si:ch211-209n20.58" [Danio rerio (taxid:7955)]

 Score = 499 (180.7 bits), Expect = 9.8e-48, P = 9.8e-48
 Identities = 127/437 (29%), Positives = 196/437 (44%)

Query:    33 KQELSCEQCGCSLDFHSALYTKDVYH-------CADCEQVFLDKFVLELHLKIEHKDNMF 85
             ++ L+C QCG S    S+LY     H       C  C + F D   L+ H++I   +   
Sbjct:   147 EKPLTCPQCGKSFSKSSSLYKHMKIHTGEKPFTCTQCGKSFYDSSYLKKHMRIHTGEK-- 204

Query:    86 PKSHWFVCKMCGHRLFMRLSDLRRHMQDYHCEFHFDVESCAVSRLQDITFPCEECKELCV 145
             P    F C  CG + F   S L++HM  +  E  F    C  S  +  +           
Sbjct:   205 P----FTCAQCG-KSFNCSSHLKKHMMIHTGEKPFTCTQCGKSFSKSSSLYRHMRIHTGE 259

Query:   146 LSKYCIKHQDCSKAMSTPAPSSESVCIKHSNLIPKCHSCQKCEESFDNCNNLWSHMFIKH 205
                 C +   C K+ S  +  ++ + I H+   P   +C +C +SF + +NL  HM I  
Sbjct:   260 KPFTCTQ---CGKSFSHSSSLNQHMMI-HTGEKP--FTCPQCGKSFIHSSNLNLHMRIHT 313

Query:   206 ENSDFVCNLCPSHSKVLVRYVHSAVRHMKKHH-KLQLSIPKAHNYFRKKTVIHVNKKVN- 263
                 F C+ C    K      H   +HMK H  +   +  +    F K + ++ + K++ 
Sbjct:   314 GEKPFTCSQC---GKSFSTSSHLK-QHMKIHTGEKPFTCTQCGKSFSKSSSLYRHMKIHT 369

Query:   264 ----YKCPDCSAILLSYGGFTSHLDIHSGEKDHCCHICKKVFLRYRNLVCHIKAVHEKVR 319
                 + C  C            H+ IH+GEK   C  C K F +  NL  H++ +H   +
Sbjct:   370 GEKPFICTLCGKSFSQSSSLNLHMRIHTGEKPFTCTQCGKSFNQSSNLYLHMR-IHTGEK 428

Query:   320 DHQCSVCGKAFADITNMKVHMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHTAVN-VVC 378
                C+ CGK+F   +++ +HMRIHTGEK + C  CG +F+    LNQH ++HT      C
Sbjct:   429 PFTCTQCGKSFRQSSSLNLHMRIHTGEKPFTCTLCGKNFIHSSHLNQHMMIHTGEKPFTC 488

Query:   379 SYCGNTYKNPKSLESHIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMC 438
             + CG +++   SL  H+   HTI +   C  CGK F     L +HM +HT ++PF C  C
Sbjct:   489 TQCGKSFRISSSLCRHMM-THTIEKPFTCTQCGKSFSQSSYLNKHMRIHTREKPFTCTQC 547

Query:   439 PSAFKLKKHLQQHYKVH 455
               +F    HL  H  +H
Sbjct:   548 GKSFSQSSHLNLHMMIH 564

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

UNIPROTKB|F1M7V0 Zfp74 "Protein Zfp74" [Rattus norvegicus (taxid:10116)]

 Score = 495 (179.3 bits), Expect = 2.6e-47, P = 2.6e-47
 Identities = 128/432 (29%), Positives = 203/432 (46%)

Query:    38 CEQCGCS------LDFHSALYTKDV-YHCADCEQVFLDKFVLELHLKIEHKDNMFPKSHW 90
             C++CG S      L  H  ++T +  Y C +C + F  K  L  H K+   +   P    
Sbjct:   268 CQECGKSFSQKSNLIDHEKIHTGEKPYECRECGKSFSQKQSLVAHQKVHTGEK--P---- 321

Query:    91 FVCKMCGHRLFMRLSDLRRHMQDYHCEFHFDVESCAVSRLQDITFPCEECKELCVLSKYC 150
             + C  CG + F R++ L  HM+ +  E  +  + C  +  Q   F            +  
Sbjct:   322 YACNECG-KAFPRIASLALHMRSHTGEKPYKCDKCGKAFSQ---FSMLIIHVRIHTGEKP 377

Query:   151 IKHQDCSKAMSTPAPSSESVCIKHSNLIPKCHSCQKCEESFDNCNNLWSHMFIKHENSDF 210
              +  +C KA S    S+ +V I+ S+   K + C++C +SF +  N  +H  I      +
Sbjct:   378 YECSECGKAFSQS--SALTVHIR-SHTGEKPYECKECRKSFSHKKNFITHQKIHTREKPY 434

Query:   211 VCNLCPSHSKVLVRYVHSAVRHMKKHHKLQLSIPK-AHNYFRKKTVIHVNKKVN-----Y 264
              CN C    K  ++ + + VRH + H   +  + K     F +K+ +  ++K++     Y
Sbjct:   435 GCNEC---GKAFIQ-MSNLVRHQRIHTGEKPYLCKECGKAFSQKSNLIAHEKIHSGEKPY 490

Query:   265 KCPDCSAILLSYGGFTSHLDIHSGEKDHCCHICKKVFLRYRNLVCHIKAVHEKVRDHQCS 324
             +C +C         F +H  +H+GEK + C+ C K F +  +L  H+++ H   R ++C 
Sbjct:   491 ECNECGKAFSQKQNFITHQKVHTGEKPYDCNKCGKAFSQIASLTLHLRS-HTGERPYECD 549

Query:   325 VCGKAFADITNMKVHMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHTAVNVV-CSYCGN 383
              CGKAF+  + + +HMR HTGEK Y+C  CG +F Q  SL  H   HT      C+ CG 
Sbjct:   550 KCGKAFSQCSLLNLHMRSHTGEKPYICNECGKAFSQRTSLIVHMRGHTGEKPYECNKCGK 609

Query:   384 TYKNPKSLESHIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMCPSAFK 443
              +    SL  HIR  HT  +   C  CGK F     L  HM  HT ++P+ C  C  AF 
Sbjct:   610 AFSQSSSLTIHIR-GHTGEKPFDCSKCGKAFSQISSLTLHMRKHTGEKPYNCIECGKAFS 668

Query:   444 LKKHLQQHYKVH 455
              K HL +H ++H
Sbjct:   669 QKSHLVRHQRIH 680

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|A6NN14 ZNF729 "Zinc finger protein 729" [Homo sapiens (taxid:9606)]

 Score = 505 (182.8 bits), Expect = 3.3e-47, P = 3.3e-47
 Identities = 129/435 (29%), Positives = 193/435 (44%)

Query:    33 KQELSCEQCGCS------LDFHSALYTKDV-YHCADCEQVFLDKFVLELHLKIEHKDNMF 85
             K+   CE+CG +      L  H A++T +  Y C +C + F     L  H KI H     
Sbjct:   625 KKPYKCEECGKAFRQSSHLTRHKAIHTGEKPYKCEECGKAFSHFSALRRH-KIIHTGKK- 682

Query:    86 PKSHWFVCKMCGHRLFMRLSDLRRHMQDYHCEFHFDVESCAVSRLQDITFPCEECKELCV 145
             P    + C+ CG + F   S LRRH   +  E  +  E C  +            K +  
Sbjct:   683 P----YKCEECG-KAFSHFSALRRHKIIHTGEKPYKCEECGKAFKWSSKLTVH--KVIHT 735

Query:   146 LSKYCIKHQDCSKAMSTPAPSSESVCIKHSNLIPKCHSCQKCEESFDNCNNLWSHMFIKH 205
               K C K ++C K+    +   +   I H+    K + C++C ++F++ + L  H  I  
Sbjct:   736 AEKPC-KCEECGKSFKHFSALRKHKVI-HTR--EKLYKCEECVKAFNSFSALMKHKVIHT 791

Query:   206 ENSDFVCNLCPSHSKVLVRY-VHSAVRHMKKHHKLQLSIPKAHNYF---RKKTVIHVNKK 261
                 + C  C    K   +  VH  +   +K  K +    KA  +F   RK  +IH  +K
Sbjct:   792 GEKPYKCEECGKAFKWSSKLTVHKVIHTGEKPCKCE-ECGKAFKHFSALRKHKIIHTGEK 850

Query:   262 VNYKCPDCSAILLSYGGFTSHLDIHSGEKDHCCHICKKVFLRYRNLVCHIKAVHEKVRDH 321
               YKC +C            H  IH+GEK + C  C K F R  +L  H K +H   + +
Sbjct:   851 P-YKCEECGKAFHQSSKLAKHKKIHTGEKPYKCEECGKAFNRLSHLTTH-KIIHTGKKPY 908

Query:   322 QCSVCGKAFADITNMKVHMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHTAVNVV-CSY 380
             +C  CGKAF    N+  H RIHTGEK Y CE CG +F Q  +L  H ++H       C  
Sbjct:   909 KCEECGKAFNQSANLTTHKRIHTGEKPYKCEECGRAFSQSSTLTAHKIIHAGEKPYKCEE 968

Query:   381 CGNTYKNPKSLESHIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMCPS 440
             CG  +    +L +H +  HT  +   C+ CGK F     L  H  +H+ ++P+ C+ C  
Sbjct:   969 CGKAFSQSSTLTTH-KIIHTGEKFYKCEECGKAFSQLSHLTTHKRIHSGEKPYKCEECGK 1027

Query:   441 AFKLKKHLQQHYKVH 455
             AFK    L  H ++H
Sbjct:  1028 AFKQSSTLTTHKRIH 1042

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

ZFIN|ZDB-GENE-070705-76 si:ch211-165i18.1 "si:ch211-165i18.1" [Danio rerio (taxid:7955)]

 Score = 493 (178.6 bits), Expect = 4.2e-47, P = 4.2e-47
 Identities = 135/470 (28%), Positives = 212/470 (45%)

Query:     3 WTCCKCIAKYTSRXXXXXXXXXXXXDADEIKQELSCEQCGCS------LDFHSALYTKD- 55
             +TCC C   ++ R            D     +  +C+QCG S      +D H  ++T + 
Sbjct:     5 FTCCVCGKCFSQRHNLKVHMRIHTGD-----KLFTCDQCGKSFTQKSKIDVHMRVHTSER 59

Query:    56 VYHCADCEQVFLDKFVLELHLKIEHKDNMFPKSHWFVCKMCGHRLFMRLSDLRRHMQDYH 115
              Y C  C + F  K  L+LH++I   +  FP      C  CG R F +L  L+ H   + 
Sbjct:    60 PYSCPQCAKGFRQKQHLKLHMRIHSGEKPFP------CNQCGKR-FSQLQALQSHFTIHS 112

Query:   116 CEFHFDVESCAVSRLQDITFPCEECKELCVLSK---YCIKHQDCSKAMSTPAPSSESVCI 172
              E  +    C  S  Q    P  E K L V S+   +   H  C    +        + I
Sbjct:   113 GERPYACTQCEKSFRQR---PSLE-KHLKVHSREKPFTCSH--CGNGFTQKERLQNHMRI 166

Query:   173 KHSNLIPKCHSCQKCEESFDNCNNLWSHMFIKHENSDFVCNLCPSHSKVLVRYVHSAVRH 232
              H+   P   +C  CE++F + +NL+ H+        FVC  C        R  +S V H
Sbjct:   167 -HTGEKP--FACPHCEKTFAHRSNLYFHVRTHTGEKPFVCTHCGKS----FRCKNSLVGH 219

Query:   233 MKKHH-KLQLSIPKAHNYFRKKTVI--HVNKKVN---YKCPDCSAILLSYGGFTSHLDIH 286
             M+ H  +   +  +    F ++  +  H++       Y C      +LS+    +H+ IH
Sbjct:   220 MRTHTGEKPFACDQCGKSFSREFNLKCHMSNHTGEKPYTCEGGGYNMLSHN-LEAHMRIH 278

Query:   287 SGEKDHCCHICKKVFLRYRNLVCHIKAVHEKVRDHQCSVCGKAFADITNMKVHMRIHTGE 346
             +GEK   C  C K F +   +  H++ VH + R + C  CGK+F    ++K+H+RIHTGE
Sbjct:   279 TGEKPFSCDQCGKSFTQKSKIKVHMR-VHTRERPYTCPECGKSFRQKQHLKLHIRIHTGE 337

Query:   347 KKYVCETCGASFVQWGSLNQHNLVHTAVN-VVCSYCGNTYKNPKSLESHIRYAHTIRQKS 405
             K + C+ CG SF Q  +L  H  +HT     +C+ CG  +K    L+SHIR  HT  +  
Sbjct:   338 KPFACQQCGNSFTQIQALQNHMGIHTREKPYICTQCGKNFKCKSYLDSHIR-THTGEKPY 396

Query:   406 ICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVH 455
              C  CGK +K +  L  HM  H+ ++ + C  C  +  +K +L  H ++H
Sbjct:   397 KCGQCGKSYKQRANLSHHMKRHSREQGYTCSQCGKSVAIKHNLITHIRIH 446

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

MGI|MGI:107784 Zfp74 "zinc finger protein 74" [Mus musculus (taxid:10090)]

 Score = 493 (178.6 bits), Expect = 4.2e-47, P = 4.2e-47
 Identities = 129/432 (29%), Positives = 204/432 (47%)

Query:    38 CEQCGCS------LDFHSALYTKDV-YHCADCEQVFLDKFVLELHLKIEHKDNMFPKSHW 90
             C++CG S      L  H  ++T +  Y C +C + F  K  L  H K+   +   P    
Sbjct:   265 CQECGKSFGQKSNLIDHEKIHTGEKPYKCNECGKSFSQKQSLVAHQKVHTGEK--P---- 318

Query:    91 FVCKMCGHRLFMRLSDLRRHMQDYHCEFHFDVESCAVSRLQDITFPCEECKELCVLSKYC 150
             + C  CG + F R++ L  HM+ +  E  +  + C  +  Q   F            +  
Sbjct:   319 YACNECG-KAFPRVASLALHMRGHTGEKPYKCDKCGKAFSQ---FSMLIIHVRVHTGEKP 374

Query:   151 IKHQDCSKAMSTPAPSSESVCIKHSNLIPKCHSCQKCEESFDNCNNLWSHMFIKHENSDF 210
              +  +C KA S    S+ +V I+ S+   K + C++C +SF +  N  +H  I      +
Sbjct:   375 YECGECGKAFSQS--SALTVHIR-SHTGEKPYECKECRKSFSHKKNFITHQKIHTREKPY 431

Query:   211 VCNLCPSHSKVLVRYVHSAVRHMKKHHKLQLSIPK-AHNYFRKKTVIHVNKKVN-----Y 264
              CN C    K  ++ + + VRH + H   +  + K     F +K+ +  ++K++     Y
Sbjct:   432 GCNEC---GKAFIQ-MSNLVRHQRIHTGEKPYLCKECGKAFSQKSNLIAHEKIHSGEKPY 487

Query:   265 KCPDCSAILLSYGGFTSHLDIHSGEKDHCCHICKKVFLRYRNLVCHIKAVHEKVRDHQCS 324
             +C +C         F +H  +H+GEK + C+ C K F +  +L  H+++ H   + ++C 
Sbjct:   488 ECNECGKAFSQKQNFITHQKVHTGEKPYDCNKCGKAFSQIASLTLHLRS-HTGEKPYECE 546

Query:   325 VCGKAFADITNMKVHMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHTAVNVV-CSYCGN 383
              CGKAF+  + + +HMR HTGEK YVC  CG +F Q  SL  H   HT      C+ CG 
Sbjct:   547 KCGKAFSQCSLLNLHMRSHTGEKPYVCNECGKAFSQRTSLIVHMRGHTGEKPYECNKCGK 606

Query:   384 TYKNPKSLESHIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMCPSAFK 443
              +    SL  HIR  HT  +   C  CGK F     L  HM  HT ++P+VC  C  AF 
Sbjct:   607 AFSQSSSLTIHIR-GHTGEKPFDCSNCGKAFSQISSLTLHMRKHTGEKPYVCIECGKAFS 665

Query:   444 LKKHLQQHYKVH 455
              K HL +H ++H
Sbjct:   666 QKSHLVRHQRIH 677

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|F1RKN0 ZNF569 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 492 (178.3 bits), Expect = 5.4e-47, P = 5.4e-47
 Identities = 126/433 (29%), Positives = 201/433 (46%)

Query:    37 SCEQCGCS------LDFHSALYTKDV-YHCADCEQVFLDKFVLELHLKIEHKDNMFPKSH 89
             +C++CG S      L  H  ++T +  Y C +C + F  K  L  H K+   +   P   
Sbjct:   271 ACKECGKSFSQKSNLIDHEKIHTGEKPYECNECGKAFSQKQSLIAHQKVHTGEK--P--- 325

Query:    90 WFVCKMCGHRLFMRLSDLRRHMQDYHCEFHFDVESCAVSRLQDITFPCEECKELCVLSKY 149
              + C  CG + F R++ L  HM+ +  E  +  + C  +  Q   F            + 
Sbjct:   326 -YACNECG-KAFPRIASLALHMRSHTGEKPYKCDKCGKAFSQ---FSMLIIHVRIHTGEK 380

Query:   150 CIKHQDCSKAMSTPAPSSESVCIKHSNLIPKCHSCQKCEESFDNCNNLWSHMFIKHENSD 209
               +  +C K+ S    SS       S+   K + C++C ++F +  N  +H  I      
Sbjct:   381 PYECNECGKSFSQ---SSALTVHMRSHTGEKPYECKECRKAFSHKKNFITHQKIHTREKP 437

Query:   210 FVCNLCPSHSKVLVRYVHSAVRHMKKHHKLQLSIPK-AHNYFRKKTVIHVNKKVN----- 263
             + CN C    K  ++ + + VRH + H   +  I K     F +K+ +  ++K++     
Sbjct:   438 YECNEC---GKAFIQ-MSNLVRHQRIHTGEKPYICKECGKAFSQKSNLIAHEKIHSGEKP 493

Query:   264 YKCPDCSAILLSYGGFTSHLDIHSGEKDHCCHICKKVFLRYRNLVCHIKAVHEKVRDHQC 323
             Y+C +C         F +H  +H+GEK + C+ C K F +  +L  H+++ H   + ++C
Sbjct:   494 YECNECGKAFSQKQNFITHQKVHTGEKPYDCNECGKAFSQIASLTLHLRS-HTGEKPYEC 552

Query:   324 SVCGKAFADITNMKVHMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHTAVNVV-CSYCG 382
               CGKAF+  + + +HMR HTGEK YVC  CG +F Q  SL  H   HT      C+ CG
Sbjct:   553 DKCGKAFSQCSLLNLHMRSHTGEKPYVCNECGKAFSQRTSLIVHMRGHTGEKPYECNKCG 612

Query:   383 NTYKNPKSLESHIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMCPSAF 442
               +    SL  HIR  HT  +   C  CGK F     L  HM  HT ++P+ C+ C  AF
Sbjct:   613 KAFSQSSSLTIHIR-GHTGEKPFDCSKCGKAFSQISSLTLHMRKHTGEKPYHCNECGKAF 671

Query:   443 KLKKHLQQHYKVH 455
               K HL +H ++H
Sbjct:   672 SQKSHLVRHQRIH 684

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|F1MH55 ZNF569 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 492 (178.3 bits), Expect = 5.4e-47, P = 5.4e-47
 Identities = 126/433 (29%), Positives = 201/433 (46%)

Query:    37 SCEQCGCS------LDFHSALYTKDV-YHCADCEQVFLDKFVLELHLKIEHKDNMFPKSH 89
             +C++CG S      L  H  ++T +  Y C +C + F  K  L  H K+   +   P   
Sbjct:   270 ACKECGKSFSQKSNLIDHEKIHTGEKPYECHECGKAFSQKQSLIAHQKVHTGEK--P--- 324

Query:    90 WFVCKMCGHRLFMRLSDLRRHMQDYHCEFHFDVESCAVSRLQDITFPCEECKELCVLSKY 149
              + C  CG + F R++ L  HM+ +  E  +  + C  +  Q   F            + 
Sbjct:   325 -YACNECG-KAFPRIASLALHMRSHTGEKPYKCDKCGKAFSQ---FSMLIIHVRIHTGEK 379

Query:   150 CIKHQDCSKAMSTPAPSSESVCIKHSNLIPKCHSCQKCEESFDNCNNLWSHMFIKHENSD 209
               +  +C K+ S    SS       S+   K + C++C ++F +  N  +H  I      
Sbjct:   380 PYECNECGKSFSQ---SSALTVHMRSHTGEKPYECKECRKAFSHKKNFITHQKIHTREKP 436

Query:   210 FVCNLCPSHSKVLVRYVHSAVRHMKKHHKLQLSIPK-AHNYFRKKTVIHVNKKVN----- 263
             + CN C    K  ++ + + VRH + H   +  I K     F +K+ +  ++K++     
Sbjct:   437 YECNEC---GKAFIQ-MSNLVRHQRIHTGEKPYICKECGKAFSQKSNLIAHEKIHSGEKP 492

Query:   264 YKCPDCSAILLSYGGFTSHLDIHSGEKDHCCHICKKVFLRYRNLVCHIKAVHEKVRDHQC 323
             Y+C +C         F +H  +H+GEK + C+ C K F +  +L  H+++ H   + ++C
Sbjct:   493 YECNECGKAFSQKQNFITHQKVHTGEKPYDCNECGKAFSQIASLTLHLRS-HTGEKPYEC 551

Query:   324 SVCGKAFADITNMKVHMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHTAVNVV-CSYCG 382
               CGKAF+  + + +HMR HTGEK YVC  CG +F Q  SL  H   HT      C+ CG
Sbjct:   552 DKCGKAFSQCSLLNLHMRSHTGEKPYVCNECGKAFSQRTSLIVHMRGHTGEKPYECNKCG 611

Query:   383 NTYKNPKSLESHIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMCPSAF 442
               +    SL  HIR  HT  +   C  CGK F     L  HM  HT ++P+ C+ C  AF
Sbjct:   612 KAFSQSSSLTIHIR-GHTGEKPFDCSKCGKAFSQISSLTLHMRKHTGEKPYHCNECGKAF 670

Query:   443 KLKKHLQQHYKVH 455
               K HL +H ++H
Sbjct:   671 SQKSHLVRHQRIH 683

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	459
pfam13465	26	pfam13465, zf-H2C2_2, Zinc-finger double domain	0.003

>gnl|CDD|222150 pfam13465, zf-H2C2_2, Zinc-finger double domain

 Score = 34.7 bits (80), Expect = 0.003
 Identities = 15/26 (57%), Positives = 17/26 (65%)

Query: 335 NMKVHMRIHTGEKKYVCETCGASFVQ 360
           N++ HMR HTGEK Y C  CG SF  
Sbjct: 1   NLRRHMRTHTGEKPYKCPVCGKSFSS 26

Length = 26

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	459
KOG1074|consensus	958		99.95
KOG2462|consensus	279		99.95
KOG3608|consensus	467		99.94
KOG3608|consensus	467		99.93
KOG2462|consensus	279		99.92
KOG1074|consensus	958		99.91
KOG3623|consensus	1007		99.89
KOG3623|consensus	1007		99.85
KOG3576|consensus	267		99.63
KOG3576|consensus	267		99.62
PLN03086	567	PRLI-interacting factor K; Provisional	99.22
PLN03086	567	PRLI-interacting factor K; Provisional	99.11
PHA00733	128	hypothetical protein	99.08
PHA02768	55	hypothetical protein; Provisional	98.97
PHA00733	128	hypothetical protein	98.93
KOG3993|consensus	500		98.76
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	98.74
KOG3993|consensus	500		98.66
PHA02768	55	hypothetical protein; Provisional	98.61
PHA00616	44	hypothetical protein	98.53
PHA00732	79	hypothetical protein	98.37
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	98.37
KOG1146|consensus	1406		98.31
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	98.2
PHA00616	44	hypothetical protein	98.17
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	98.14
PHA00732	79	hypothetical protein	98.11
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	97.96
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	97.89
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	97.75
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	97.67
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	97.59
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	97.56
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	97.5
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	97.45
COG5189	423	SFP1 Putative transcriptional repressor regulating	97.4
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	97.0
KOG1146|consensus	1406		97.0
smart00355	26	ZnF_C2H2 zinc finger.	96.94
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	96.89
COG5189	423	SFP1 Putative transcriptional repressor regulating	96.85
smart00355	26	ZnF_C2H2 zinc finger.	96.81
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	96.77
KOG2231|consensus	669		96.58
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	96.49
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	96.41
KOG2231|consensus	669		96.4
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	96.3
PRK04860	160	hypothetical protein; Provisional	96.26
KOG2482|consensus	423		96.09
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	96.02
COG5236	493	Uncharacterized conserved protein, contains RING Z	95.92
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	95.52
KOG2482|consensus	423		95.29
PRK04860	160	hypothetical protein; Provisional	94.38
PF13913	25	zf-C2HC_2: zinc-finger of a C2HC-type	94.29
PF13913	25	zf-C2HC_2: zinc-finger of a C2HC-type	94.03
KOG2785|consensus	390		93.73
COG5236	493	Uncharacterized conserved protein, contains RING Z	93.01
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	92.65
KOG2785|consensus	390		92.51
KOG2893|consensus	341		92.08
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	91.96
KOG4173|consensus	253		90.93
TIGR00622	112	ssl1 transcription factor ssl1. This family is bas	90.01
cd00350	33	rubredoxin_like Rubredoxin_like; nonheme iron bind	89.97
COG4049	65	Uncharacterized protein containing archaeal-type C	89.29
COG5048	467	FOG: Zn-finger [General function prediction only]	88.93
PF00301	47	Rubredoxin: Rubredoxin; InterPro: IPR004039 Rubred	88.76
KOG4173|consensus	253		88.45
KOG2893|consensus	341		88.41
COG5048	467	FOG: Zn-finger [General function prediction only]	88.34
PF12013	109	DUF3505: Protein of unknown function (DUF3505); In	87.78
PF09723	42	Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR0134	86.49
PF12013	109	DUF3505: Protein of unknown function (DUF3505); In	86.48
smart00834	41	CxxC_CXXC_SSSS Putative regulatory protein. CxxC_C	84.76
PF03604	32	DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa	83.52
cd00730	50	rubredoxin Rubredoxin; nonheme iron binding domain	82.85
PHA00626	59	hypothetical protein	82.62
PF09538	108	FYDLN_acid: Protein of unknown function (FYDLN_aci	81.55
TIGR00622	112	ssl1 transcription factor ssl1. This family is bas	80.93
cd00729	34	rubredoxin_SM Rubredoxin, Small Modular nonheme ir	80.52
TIGR02098	38	MJ0042_CXXC MJ0042 family finger-like domain. This	80.14

>KOG1074|consensus

Probab=99.95  E-value=8.7e-30  Score=242.22  Aligned_cols=242  Identities=21%  Similarity=0.416  Sum_probs=158.4

Q ss_pred             cccccchhhccChhHHHHhhhhhcCCCccccCCCCCCCchhhHhHHHHHHHHHHhccccCCcccchhhcccceeeecCCC
Q psy11588        182 HSCQKCEESFDNCNNLWSHMFIKHENSDFVCNLCPSHSKVLVRYVHSAVRHMKKHHKLQLSIPKAHNYFRKKTVIHVNKK  261 (459)
Q Consensus       182 ~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~~f~~~~~~~~~l~~H~~~h~~~~~~~~~~~~~~~~~~~~~~~~~  261 (459)
                      -.|-+|-++..-.+.|+.|.++|.|++||+|.+|++.|    ..+.+|+.||-.|....                  .-.
T Consensus       606 NqCiiC~rVlSC~saLqmHyrtHtGERPFkCKiCgRAF----tTkGNLkaH~~vHka~p------------------~~R  663 (958)
T KOG1074|consen  606 NQCIICLRVLSCPSALQMHYRTHTGERPFKCKICGRAF----TTKGNLKAHMSVHKAKP------------------PAR  663 (958)
T ss_pred             cceeeeeecccchhhhhhhhhcccCcCccccccccchh----ccccchhhcccccccCc------------------ccc
Confidence            68999999999999999999999999999999999999    88888999988875422                  003


Q ss_pred             cccccc---cChhcccCHHHHHHHHhhccCCC-------------CccccccccccCCHHHHHHHHHHHcCCCCcccccc
Q psy11588        262 VNYKCP---DCSAILLSYGGFTSHLDIHSGEK-------------DHCCHICKKVFLRYRNLVCHIKAVHEKVRDHQCSV  325 (459)
Q Consensus       262 ~~~~C~---~C~~~f~~~~~l~~H~~~h~~~~-------------~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~  325 (459)
                      ..+.|+   +|-+.|...-.|..|+++|.+..             .-+|..|.+.|.....+..++. .|.+...     
T Consensus       664 ~q~ScP~~~ic~~kftn~V~lpQhIriH~~~~~s~g~~a~e~~~~adq~~~~qk~~~~a~~f~~~~s-e~~~~~s-----  737 (958)
T KOG1074|consen  664 VQFSCPSTFICQKKFTNAVTLPQHIRIHLGGQISNGGTAAEGILAADQCSSCQKTFSDARSFSQQIS-EQPSPES-----  737 (958)
T ss_pred             ccccCCchhhhcccccccccccceEEeecCCCCCCCcccccccchhcccchhhhcccccccchhhhh-ccCCccc-----
Confidence            468888   89999999888999988887421             1346667777766666666655 2321110     


Q ss_pred             ccccccChHHHHHHHHHcCCCC----CcccccccccccccchHHHHHhh-----------------------hCCC-Cc-
Q psy11588        326 CGKAFADITNMKVHMRIHTGEK----KYVCETCGASFVQWGSLNQHNLV-----------------------HTAV-NV-  376 (459)
Q Consensus       326 C~~~f~~~~~l~~H~~~h~~~~----~~~C~~C~~~f~~~~~l~~H~~~-----------------------h~~~-~~-  376 (459)
                             .-....+.+.+.++.    +..+..|+..+.....+..+-..                       .+.. +. 
T Consensus       738 -------~~~~~~~~~t~t~~~~~tp~~~e~~~~~~~~~e~~i~~~g~te~asa~~~~vg~~s~~~~~~~~~~T~~k~~~  810 (958)
T KOG1074|consen  738 -------EPDEQMDERTETEELDVTPPPPENSCGRELEGEMAISVRGSTEEASANLDEVGTVSAAGEAGEEDDTSEKPTQ  810 (958)
T ss_pred             -------CCcccccccccccccccCCCccccccccccCcccccccccchhhhhcChhhhcCccccchhhhhcccCCCCcc
Confidence                   001111111122222    34455555555544443333111                       1111 22 


Q ss_pred             ccCCCCCcCCChHHHH----H-HHHh------------hcC------------------------CCCccccccchhccC
Q psy11588        377 VCSYCGNTYKNPKSLE----S-HIRY------------AHT------------------------IRQKSICDVCGKEFK  415 (459)
Q Consensus       377 ~C~~C~~~f~~~~~l~----~-H~~~------------~H~------------------------~~~~~~C~~C~~~f~  415 (459)
                      .+..++..-.......    . -...            .+.                        ......|.+||+.|.
T Consensus       811 ~~~~~~~~~~~~v~~~pvl~~~~~~~l~eg~~t~~n~~t~~~~~~sv~qs~~~p~l~p~l~~~~pvnn~h~C~vCgk~Fs  890 (958)
T KOG1074|consen  811 ASSFPGEILAPSVNMDPVLWNQETSMLNEGLATKTNEITPEGPADSVIQSGGVPTLEPSLGRPGPVNNAHVCNVCGKQFS  890 (958)
T ss_pred             cccCCCcCCccccccCchhhcccccccccccccccccccCCCcchhhhhhccccccCCCCCCCCcccchhhhccchhccc
Confidence            3444443322211000    0 0000            000                        011267999999999


Q ss_pred             ChHHHHHHHHHhCCCCCcccCccccccCChHHHHHHHHHhcCC
Q psy11588        416 MKKRLKEHMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVHLKK  458 (459)
Q Consensus       416 ~~~~l~~H~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~  458 (459)
                      ..++|..|+++|+++|||.|.+|++.|+.+.+|+.||.+|+..
T Consensus       891 SSsALqiH~rTHtg~KPF~C~fC~~aFttrgnLKvHMgtH~w~  933 (958)
T KOG1074|consen  891 SSAALEIHMRTHTGPKPFFCHFCEEAFTTRGNLKVHMGTHMWV  933 (958)
T ss_pred             chHHHHHhhhcCCCCCCccchhhhhhhhhhhhhhhhhcccccc
Confidence            9999999999999999999999999999999999999999853

>KOG2462|consensus

Probab=99.95  E-value=1e-28  Score=207.53  Aligned_cols=135  Identities=31%  Similarity=0.660  Sum_probs=120.9

Q ss_pred             CCccccccccccccChHHHHHHHHHcCC---CCCcccccccccccccchHHHHHhhhCCCCcccCCCCCcCCChHHHHHH
Q psy11588        318 VRDHQCSVCGKAFADITNMKVHMRIHTG---EKKYVCETCGASFVQWGSLNQHNLVHTAVNVVCSYCGNTYKNPKSLESH  394 (459)
Q Consensus       318 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~---~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~C~~C~~~f~~~~~l~~H  394 (459)
                      ...|+|+.||+.+.+..+|.+|..+|-.   .+.+.|+.|++.+.+...|..|+++|+ .+.+|.+||+.|...+.|+.|
T Consensus       128 ~~r~~c~eCgk~ysT~snLsrHkQ~H~~~~s~ka~~C~~C~K~YvSmpALkMHirTH~-l~c~C~iCGKaFSRPWLLQGH  206 (279)
T KOG2462|consen  128 HPRYKCPECGKSYSTSSNLSRHKQTHRSLDSKKAFSCKYCGKVYVSMPALKMHIRTHT-LPCECGICGKAFSRPWLLQGH  206 (279)
T ss_pred             CCceeccccccccccccccchhhcccccccccccccCCCCCceeeehHHHhhHhhccC-CCcccccccccccchHHhhcc
Confidence            3457777777777777777777777743   567899999999999999999999998 478999999999999999999


Q ss_pred             HHhhcCCCCccccccchhccCChHHHHHHHHHhCCCCCcccCccccccCChHHHHHHHHH
Q psy11588        395 IRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKV  454 (459)
Q Consensus       395 ~~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~  454 (459)
                      +| .|+|++||.|+.|+|.|..+++|+.||++|.+.++|+|..|+|+|..++.|.+|...
T Consensus       207 iR-THTGEKPF~C~hC~kAFADRSNLRAHmQTHS~~K~~qC~~C~KsFsl~SyLnKH~ES  265 (279)
T KOG2462|consen  207 IR-THTGEKPFSCPHCGKAFADRSNLRAHMQTHSDVKKHQCPRCGKSFALKSYLNKHSES  265 (279)
T ss_pred             cc-cccCCCCccCCcccchhcchHHHHHHHHhhcCCccccCcchhhHHHHHHHHHHhhhh
Confidence            99 999999999999999999999999999999999999999999999999999999763

>KOG3608|consensus

Probab=99.94  E-value=4.9e-26  Score=195.96  Aligned_cols=233  Identities=21%  Similarity=0.434  Sum_probs=158.8

Q ss_pred             ccc--ccchhhccChhHHHHhhhhhcCC-------------CccccC--CCCCCCchhhHhHHHHHHHHHHhccccCCcc
Q psy11588        182 HSC--QKCEESFDNCNNLWSHMFIKHEN-------------SDFVCN--LCPSHSKVLVRYVHSAVRHMKKHHKLQLSIP  244 (459)
Q Consensus       182 ~~C--~~C~~~f~~~~~l~~H~~~~~~~-------------~~~~C~--~C~~~f~~~~~~~~~l~~H~~~h~~~~~~~~  244 (459)
                      |.|  ..|+..|.+...|..|+..|..-             ..+.|.  .|.+.+    .++..|++|++.|.+      
T Consensus       135 f~C~WedCe~~F~s~~ef~dHV~~H~l~ceyd~~~~~~D~~pv~~C~W~~Ct~~~----~~k~~LreH~r~Hs~------  204 (467)
T KOG3608|consen  135 FRCGWEDCEREFVSIVEFQDHVVKHALFCEYDIQKTPEDERPVTMCNWAMCTKHM----GNKYRLREHIRTHSN------  204 (467)
T ss_pred             hccChhhcCCcccCHHHHHHHHHHhhhhhhhhhhhCCCCCCceeeccchhhhhhh----ccHHHHHHHHHhcCC------
Confidence            566  46999999999999998766421             113344  355665    667777777777765      


Q ss_pred             cchhhcccceeeecCCCcccccccChhcccCHHHHHHHHhhc--cCCCCccccccccccCCHHHHHHHHHHHcCCCCccc
Q psy11588        245 KAHNYFRKKTVIHVNKKVNYKCPDCSAILLSYGGFTSHLDIH--SGEKDHCCHICKKVFLRYRNLVCHIKAVHEKVRDHQ  322 (459)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h--~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~  322 (459)
                                      ++...|+.|+..|.+...|..|++..  ....+|+|..|.+.|.++..|..|+. .|.  ..|+
T Consensus       205 ----------------eKvvACp~Cg~~F~~~tkl~DH~rRqt~l~~n~fqC~~C~KrFaTeklL~~Hv~-rHv--n~yk  265 (467)
T KOG3608|consen  205 ----------------EKVVACPHCGELFRTKTKLFDHLRRQTELNTNSFQCAQCFKRFATEKLLKSHVV-RHV--NCYK  265 (467)
T ss_pred             ----------------CeEEecchHHHHhccccHHHHHHHhhhhhcCCchHHHHHHHHHhHHHHHHHHHH-Hhh--hccc
Confidence                            44567777777777777777776533  33456777777777777777777776 343  3477


Q ss_pred             cccccccccChHHHHHHHHH-cCCCCCcccccccccccccchHHHHHhhhCCCCcccCC--CCCcCCChHHHHHHHHhhc
Q psy11588        323 CSVCGKAFADITNMKVHMRI-HTGEKKYVCETCGASFVQWGSLNQHNLVHTAVNVVCSY--CGNTYKNPKSLESHIRYAH  399 (459)
Q Consensus       323 C~~C~~~f~~~~~l~~H~~~-h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~C~~--C~~~f~~~~~l~~H~~~~H  399 (459)
                      |+.|+.+....++|..|++. |..++||+|+.|++.|.+.++|.+|..+|+...|.|+.  |.++|.+...|.+|++.+|
T Consensus       266 CplCdmtc~~~ssL~~H~r~rHs~dkpfKCd~Cd~~c~~esdL~kH~~~HS~~~y~C~h~~C~~s~r~~~q~~~H~~evh  345 (467)
T KOG3608|consen  266 CPLCDMTCSSASSLTTHIRYRHSKDKPFKCDECDTRCVRESDLAKHVQVHSKTVYQCEHPDCHYSVRTYTQMRRHFLEVH  345 (467)
T ss_pred             ccccccCCCChHHHHHHHHhhhccCCCccccchhhhhccHHHHHHHHHhccccceecCCCCCcHHHHHHHHHHHHHHHhc
Confidence            77777777777777777664 55667777777777777777777777777766777766  7777777777777777666


Q ss_pred             CCC--CccccccchhccCChHHHHHHHHHhC------CCCCcccCccccccC
Q psy11588        400 TIR--QKSICDVCGKEFKMKKRLKEHMAVHT------TDRPFVCDMCPSAFK  443 (459)
Q Consensus       400 ~~~--~~~~C~~C~~~f~~~~~l~~H~~~H~------~~~~~~C~~C~~~f~  443 (459)
                      .+.  .+|.|-.|++.|.+-.+|..|+...+      |-+.|.-.+|.-+|.
T Consensus       346 Eg~np~~Y~CH~Cdr~ft~G~~L~~HL~kkH~f~~PsGh~RFtYk~~edG~m  397 (467)
T KOG3608|consen  346 EGNNPILYACHCCDRFFTSGKSLSAHLMKKHGFRLPSGHKRFTYKVDEDGFM  397 (467)
T ss_pred             cCCCCCceeeecchhhhccchhHHHHHHHhhcccCCCCCCceeeeeccCcee
Confidence            443  35777777777777777777765433      233455555555554

>KOG3608|consensus

Probab=99.93  E-value=1.7e-25  Score=192.69  Aligned_cols=282  Identities=21%  Similarity=0.373  Sum_probs=219.8

Q ss_pred             eeeccc--CCcceeeehhHHhhhhhhccc------------cccccccccccccc-------cceeecC--ccchhhhhh
Q psy11588         90 WFVCKM--CGHRLFMRLSDLRRHMQDYHC------------EFHFDVESCAVSRL-------QDITFPC--EECKELCVL  146 (459)
Q Consensus        90 ~~~C~~--C~~~~f~~~~~l~~H~~~h~~------------~~~~~~~~c~~~~~-------~~~~~~C--~~C~~~f~~  146 (459)
                      .++|..  |++..-++..+|.+|.-.|--            ........|...|.       ....|.|  +.|+..|.+
T Consensus        69 e~qC~w~~C~f~~~~~s~~l~RHvy~H~y~~~l~q~G~~al~~~~dig~c~~~f~~~~~ip~~g~~f~C~WedCe~~F~s  148 (467)
T KOG3608|consen   69 EHQCTWNSCDFRTENSSADLIRHVYFHCYHTKLKQQGKLALDLHPDIGACTAPFRLMEKIPALGQNFRCGWEDCEREFVS  148 (467)
T ss_pred             ceeEEeccCCccccchHHHHHhhhhhhhhHHHHHHHHHHHHhcCCCcCcccCCcchhhccccchhhhccChhhcCCcccC
Confidence            466654  776634557899999765420            00111222322222       1134666  789999999


Q ss_pred             hhhhhhhccccCCCCCCCCCCccccccccCCCCCCcccc--cchhhccChhHHHHhhhhhcCCCccccCCCCCCCchhhH
Q psy11588        147 SKYCIKHQDCSKAMSTPAPSSESVCIKHSNLIPKCHSCQ--KCEESFDNCNNLWSHMFIKHENSDFVCNLCPSHSKVLVR  224 (459)
Q Consensus       147 ~~~l~~H~~c~~~~~~~~~l~~~~~~~h~~~~~~~~~C~--~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~~f~~~~~  224 (459)
                      ...+..|..-..-+- ...    ...+..+++|. +.|.  .|-+.+.+++.|++|++.|.+++...|+.||.-|    +
T Consensus       149 ~~ef~dHV~~H~l~c-eyd----~~~~~~D~~pv-~~C~W~~Ct~~~~~k~~LreH~r~Hs~eKvvACp~Cg~~F----~  218 (467)
T KOG3608|consen  149 IVEFQDHVVKHALFC-EYD----IQKTPEDERPV-TMCNWAMCTKHMGNKYRLREHIRTHSNEKVVACPHCGELF----R  218 (467)
T ss_pred             HHHHHHHHHHhhhhh-hhh----hhhCCCCCCce-eeccchhhhhhhccHHHHHHHHHhcCCCeEEecchHHHHh----c
Confidence            999998873211111 000    01111122221 4564  5899999999999999999999999999999999    8


Q ss_pred             hHHHHHHHHHHhccccCCcccchhhcccceeeecCCCcccccccChhcccCHHHHHHHHhhccCCCCccccccccccCCH
Q psy11588        225 YVHSAVRHMKKHHKLQLSIPKAHNYFRKKTVIHVNKKVNYKCPDCSAILLSYGGFTSHLDIHSGEKDHCCHICKKVFLRY  304 (459)
Q Consensus       225 ~~~~l~~H~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~  304 (459)
                      .+..|..|++..+...                    ..+|.|..|.+.|.+...|..|+..|..  .|+|+.|+.+....
T Consensus       219 ~~tkl~DH~rRqt~l~--------------------~n~fqC~~C~KrFaTeklL~~Hv~rHvn--~ykCplCdmtc~~~  276 (467)
T KOG3608|consen  219 TKTKLFDHLRRQTELN--------------------TNSFQCAQCFKRFATEKLLKSHVVRHVN--CYKCPLCDMTCSSA  276 (467)
T ss_pred             cccHHHHHHHhhhhhc--------------------CCchHHHHHHHHHhHHHHHHHHHHHhhh--cccccccccCCCCh
Confidence            8889999987654322                    4589999999999999999999998864  59999999999999


Q ss_pred             HHHHHHHHHHcCCCCccccccccccccChHHHHHHHHHcCCCCCccccc--ccccccccchHHHHHhhhC-CC---Cccc
Q psy11588        305 RNLVCHIKAVHEKVRDHQCSVCGKAFADITNMKVHMRIHTGEKKYVCET--CGASFVQWGSLNQHNLVHT-AV---NVVC  378 (459)
Q Consensus       305 ~~l~~H~~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~-~~---~~~C  378 (459)
                      ++|..|++..|...+||+|..|+..|...++|..|...|. +..|.|+.  |..+|.+...+.+|.+.++ +.   +|.|
T Consensus       277 ssL~~H~r~rHs~dkpfKCd~Cd~~c~~esdL~kH~~~HS-~~~y~C~h~~C~~s~r~~~q~~~H~~evhEg~np~~Y~C  355 (467)
T KOG3608|consen  277 SSLTTHIRYRHSKDKPFKCDECDTRCVRESDLAKHVQVHS-KTVYQCEHPDCHYSVRTYTQMRRHFLEVHEGNNPILYAC  355 (467)
T ss_pred             HHHHHHHHhhhccCCCccccchhhhhccHHHHHHHHHhcc-ccceecCCCCCcHHHHHHHHHHHHHHHhccCCCCCceee
Confidence            9999999999999999999999999999999999999887 77899988  9999999999999988765 33   7999


Q ss_pred             CCCCCcCCChHHHHHHHHhhcCCCCc
Q psy11588        379 SYCGNTYKNPKSLESHIRYAHTIRQK  404 (459)
Q Consensus       379 ~~C~~~f~~~~~l~~H~~~~H~~~~~  404 (459)
                      ..|++.|++-.+|.+|+...|.-.-|
T Consensus       356 H~Cdr~ft~G~~L~~HL~kkH~f~~P  381 (467)
T KOG3608|consen  356 HCCDRFFTSGKSLSAHLMKKHGFRLP  381 (467)
T ss_pred             ecchhhhccchhHHHHHHHhhcccCC
Confidence            99999999999999999988875544

>KOG2462|consensus

Probab=99.92  E-value=1.4e-25  Score=188.72  Aligned_cols=133  Identities=34%  Similarity=0.736  Sum_probs=77.8

Q ss_pred             cccccccChhcccCHHHHHHHHhhccC---CCCccccccccccCCHHHHHHHHHHHcCCCCccccccccccccChHHHHH
Q psy11588        262 VNYKCPDCSAILLSYGGFTSHLDIHSG---EKDHCCHICKKVFLRYRNLVCHIKAVHEKVRDHQCSVCGKAFADITNMKV  338 (459)
Q Consensus       262 ~~~~C~~C~~~f~~~~~l~~H~~~h~~---~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C~~~f~~~~~l~~  338 (459)
                      ..|+|+.|++.|.+..+|.+|.++|..   .+.+.|++|++.|.+...|..|++ .|.  -++.|.+||+.|...+.|+-
T Consensus       129 ~r~~c~eCgk~ysT~snLsrHkQ~H~~~~s~ka~~C~~C~K~YvSmpALkMHir-TH~--l~c~C~iCGKaFSRPWLLQG  205 (279)
T KOG2462|consen  129 PRYKCPECGKSYSTSSNLSRHKQTHRSLDSKKAFSCKYCGKVYVSMPALKMHIR-THT--LPCECGICGKAFSRPWLLQG  205 (279)
T ss_pred             CceeccccccccccccccchhhcccccccccccccCCCCCceeeehHHHhhHhh-ccC--CCcccccccccccchHHhhc
Confidence            357777777777777777777777643   234555555555555555555555 343  34555555555555555555


Q ss_pred             HHHHcCCCCCcccccccccccccchHHHHHhhhCCCCcccCCCCCcCCChHHHHHHHHhhcCCCCccccccchhccCChH
Q psy11588        339 HMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHTAVNVVCSYCGNTYKNPKSLESHIRYAHTIRQKSICDVCGKEFKMKK  418 (459)
Q Consensus       339 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~C~~~f~~~~  418 (459)
                      |+++|+||+||.|+.|++.|.+.                           ++|+.||+ .|.+.++|+|+.|+|+|..++
T Consensus       206 HiRTHTGEKPF~C~hC~kAFADR---------------------------SNLRAHmQ-THS~~K~~qC~~C~KsFsl~S  257 (279)
T KOG2462|consen  206 HIRTHTGEKPFSCPHCGKAFADR---------------------------SNLRAHMQ-THSDVKKHQCPRCGKSFALKS  257 (279)
T ss_pred             ccccccCCCCccCCcccchhcch---------------------------HHHHHHHH-hhcCCccccCcchhhHHHHHH
Confidence            55555555555555555555554                           55555555 555555566666666666666


Q ss_pred             HHHHHHH
Q psy11588        419 RLKEHMA  425 (459)
Q Consensus       419 ~l~~H~~  425 (459)
                      .|.+|..
T Consensus       258 yLnKH~E  264 (279)
T KOG2462|consen  258 YLNKHSE  264 (279)
T ss_pred             HHHHhhh
Confidence            6665544

>KOG1074|consensus

Probab=99.91  E-value=3.3e-25  Score=211.33  Aligned_cols=295  Identities=18%  Similarity=0.194  Sum_probs=154.1

Q ss_pred             ceeecccCCcceeeehhHHhhhhhhccccccccccccccccccceeecCccchhhhhhhhhhhhhccccCCCCCCCCCCc
Q psy11588         89 HWFVCKMCGHRLFMRLSDLRRHMQDYHCEFHFDVESCAVSRLQDITFPCEECKELCVLSKYCIKHQDCSKAMSTPAPSSE  168 (459)
Q Consensus        89 ~~~~C~~C~~~~f~~~~~l~~H~~~h~~~~~~~~~~c~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~c~~~~~~~~~l~~  168 (459)
                      .+-+|-+|-+. .+-.+.|+-|.|+|+||+               +|+|.+|++.|.++.+|+.|+..            
T Consensus       604 dPNqCiiC~rV-lSC~saLqmHyrtHtGER---------------PFkCKiCgRAFtTkGNLkaH~~v------------  655 (958)
T KOG1074|consen  604 DPNQCIICLRV-LSCPSALQMHYRTHTGER---------------PFKCKICGRAFTTKGNLKAHMSV------------  655 (958)
T ss_pred             Cccceeeeeec-ccchhhhhhhhhcccCcC---------------ccccccccchhccccchhhcccc------------
Confidence            35789999977 999999999999999986               47788888899999999999843            


Q ss_pred             cccccccCCCCCCcccc---cchhhccChhHHHHhhhhhcCCCc-------------cccCCCCCCCchhhHhHHHHHHH
Q psy11588        169 SVCIKHSNLIPKCHSCQ---KCEESFDNCNNLWSHMFIKHENSD-------------FVCNLCPSHSKVLVRYVHSAVRH  232 (459)
Q Consensus       169 ~~~~~h~~~~~~~~~C~---~C~~~f~~~~~l~~H~~~~~~~~~-------------~~C~~C~~~f~~~~~~~~~l~~H  232 (459)
                       |..++.-...  +.|+   +|-+.|.+...|..|+++|.+...             -+|..|.+.|    .....+..+
T Consensus       656 -Hka~p~~R~q--~ScP~~~ic~~kftn~V~lpQhIriH~~~~~s~g~~a~e~~~~adq~~~~qk~~----~~a~~f~~~  728 (958)
T KOG1074|consen  656 -HKAKPPARVQ--FSCPSTFICQKKFTNAVTLPQHIRIHLGGQISNGGTAAEGILAADQCSSCQKTF----SDARSFSQQ  728 (958)
T ss_pred             -cccCcccccc--ccCCchhhhcccccccccccceEEeecCCCCCCCcccccccchhcccchhhhcc----cccccchhh
Confidence             2223332333  8899   999999999999999999884321             2344454444    333333333


Q ss_pred             HHHhccccCCcccchhhcccceeeecC---CCcccccccChhcccCHHHHHHHHhhccCCCCccccccccccCCHHHHHH
Q psy11588        233 MKKHHKLQLSIPKAHNYFRKKTVIHVN---KKVNYKCPDCSAILLSYGGFTSHLDIHSGEKDHCCHICKKVFLRYRNLVC  309 (459)
Q Consensus       233 ~~~h~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~  309 (459)
                      +..+.+.....     ...........   ...+..+..|+..+.....+..+-..+...   .+.  +.++.....-..
T Consensus       729 ~se~~~~~s~~-----~~~~~~~t~t~~~~~tp~~~e~~~~~~~~~e~~i~~~g~te~as---a~~--~~vg~~s~~~~~  798 (958)
T KOG1074|consen  729 ISEQPSPESEP-----DEQMDERTETEELDVTPPPPENSCGRELEGEMAISVRGSTEEAS---ANL--DEVGTVSAAGEA  798 (958)
T ss_pred             hhccCCcccCC-----cccccccccccccccCCCccccccccccCcccccccccchhhhh---cCh--hhhcCccccchh
Confidence            33222111000     00000000000   001233334444433333332221111000   000  000000000000


Q ss_pred             HHHHHcCCCCcc-ccccccccccChHHHHH-HHHHc---CCCCCcccccccccccc---cchHHHHHhhhC-----C---
Q psy11588        310 HIKAVHEKVRDH-QCSVCGKAFADITNMKV-HMRIH---TGEKKYVCETCGASFVQ---WGSLNQHNLVHT-----A---  373 (459)
Q Consensus       310 H~~~~h~~~~~~-~C~~C~~~f~~~~~l~~-H~~~h---~~~~~~~C~~C~~~f~~---~~~l~~H~~~h~-----~---  373 (459)
                      + ...++++++. .+..++......-...- =+...   .++..- =.  -..+..   ...+..--.+-.     +   
T Consensus       799 ~-~~~~T~~k~~~~~~~~~~~~~~~v~~~pvl~~~~~~~l~eg~~-t~--~n~~t~~~~~~sv~qs~~~p~l~p~l~~~~  874 (958)
T KOG1074|consen  799 G-EEDDTSEKPTQASSFPGEILAPSVNMDPVLWNQETSMLNEGLA-TK--TNEITPEGPADSVIQSGGVPTLEPSLGRPG  874 (958)
T ss_pred             h-hhcccCCCCcccccCCCcCCccccccCchhhcccccccccccc-cc--cccccCCCcchhhhhhccccccCCCCCCCC
Confidence            1 1122333444 44444433222110000 00000   000000 00  000000   000000000000     0   


Q ss_pred             ---CCcccCCCCCcCCChHHHHHHHHhhcCCCCccccccchhccCChHHHHHHHHHhCCCCCc
Q psy11588        374 ---VNVVCSYCGNTYKNPKSLESHIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPF  433 (459)
Q Consensus       374 ---~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~  433 (459)
                         ....|..|++.|.+.+.|+.|++ .|++++||.|.+|++.|..+..|+.||.+|....|+
T Consensus       875 pvnn~h~C~vCgk~FsSSsALqiH~r-THtg~KPF~C~fC~~aFttrgnLKvHMgtH~w~q~~  936 (958)
T KOG1074|consen  875 PVNNAHVCNVCGKQFSSSAALEIHMR-THTGPKPFFCHFCEEAFTTRGNLKVHMGTHMWVQPP  936 (958)
T ss_pred             cccchhhhccchhcccchHHHHHhhh-cCCCCCCccchhhhhhhhhhhhhhhhhccccccCCC
Confidence               02469999999999999999999 999999999999999999999999999999887654

>KOG3623|consensus

Probab=99.89  E-value=1.6e-23  Score=196.44  Aligned_cols=117  Identities=26%  Similarity=0.474  Sum_probs=95.7

Q ss_pred             cccccchhhccChhHHHHhhhhhcCCCcc---ccCCCCCCCchhhHhHHHHHHHHHHhccccCCcccchhhcccceeeec
Q psy11588        182 HSCQKCEESFDNCNNLWSHMFIKHENSDF---VCNLCPSHSKVLVRYVHSAVRHMKKHHKLQLSIPKAHNYFRKKTVIHV  258 (459)
Q Consensus       182 ~~C~~C~~~f~~~~~l~~H~~~~~~~~~~---~C~~C~~~f~~~~~~~~~l~~H~~~h~~~~~~~~~~~~~~~~~~~~~~  258 (459)
                      ..|++|+..+.....|+.|++..|. +.-   .|.+|.+.|    .++..|.+||.+|....-.    .    . .....
T Consensus       211 ltcpycdrgykrltslkeHikyrhe-kne~nfsC~lCsytF----AyRtQLErhm~~hkpg~dq----a----~-sltqs  276 (1007)
T KOG3623|consen  211 LTCPYCDRGYKRLTSLKEHIKYRHE-KNEPNFSCMLCSYTF----AYRTQLERHMQLHKPGGDQ----A----I-SLTQS  276 (1007)
T ss_pred             hcchhHHHHHHHHHHHHHHHHHHHh-hCCCCCcchhhhhhh----hhHHHHHHHHHhhcCCCcc----c----c-cccch
Confidence            5799999999999999999987653 223   299999999    9999999999999753200    0    0 00111


Q ss_pred             CCCcccccccChhcccCHHHHHHHHhhccCCCCccccccccccCCHHHHHHHHH
Q psy11588        259 NKKVNYKCPDCSAILLSYGGFTSHLDIHSGEKDHCCHICKKVFLRYRNLVCHIK  312 (459)
Q Consensus       259 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~  312 (459)
                      ...+.|+|..|++.|.-+-.|+.|+++|.|++||.|+-|++.|....+...||.
T Consensus       277 a~lRKFKCtECgKAFKfKHHLKEHlRIHSGEKPfeCpnCkKRFSHSGSySSHmS  330 (1007)
T KOG3623|consen  277 ALLRKFKCTECGKAFKFKHHLKEHLRIHSGEKPFECPNCKKRFSHSGSYSSHMS  330 (1007)
T ss_pred             hhhccccccccchhhhhHHHHHhhheeecCCCCcCCcccccccccCCccccccc
Confidence            124579999999999999999999999999999999999999999999999974

>KOG3623|consensus

Probab=99.85  E-value=1.1e-21  Score=184.19  Aligned_cols=80  Identities=34%  Similarity=0.620  Sum_probs=76.7

Q ss_pred             CCCccccccccccCCHHHHHHHHHHHcCCCCccccccccccccChHHHHHHHHHcCCCCCcccccccccccccchHHHHH
Q psy11588        289 EKDHCCHICKKVFLRYRNLVCHIKAVHEKVRDHQCSVCGKAFADITNMKVHMRIHTGEKKYVCETCGASFVQWGSLNQHN  368 (459)
Q Consensus       289 ~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~  368 (459)
                      +.+|.|+.|++.|.-.++|.+|.- .|+|.+||+|.+|.+.|..+-.|..|++.|.|++||+|+.|+++|....++..||
T Consensus       892 ~gmyaCDqCDK~FqKqSSLaRHKY-EHsGqRPyqC~iCkKAFKHKHHLtEHkRLHSGEKPfQCdKClKRFSHSGSYSQHM  970 (1007)
T KOG3623|consen  892 DGMYACDQCDKAFQKQSSLARHKY-EHSGQRPYQCIICKKAFKHKHHLTEHKRLHSGEKPFQCDKCLKRFSHSGSYSQHM  970 (1007)
T ss_pred             cccchHHHHHHHHHhhHHHHHhhh-hhcCCCCcccchhhHhhhhhhhhhhhhhhccCCCcchhhhhhhhcccccchHhhh
Confidence            457999999999999999999976 8999999999999999999999999999999999999999999999999999998


Q ss_pred             h
Q psy11588        369 L  369 (459)
Q Consensus       369 ~  369 (459)
                      .
T Consensus       971 N  971 (1007)
T KOG3623|consen  971 N  971 (1007)
T ss_pred             c
Confidence            5

>KOG3576|consensus

Probab=99.63  E-value=1.1e-16  Score=127.81  Aligned_cols=116  Identities=28%  Similarity=0.568  Sum_probs=88.9

Q ss_pred             CCCccccccccccccChHHHHHHHHHcCCCCCcccccccccccccchHHHHHhhhCCC-CcccCCCCCcCCChHHHHHHH
Q psy11588        317 KVRDHQCSVCGKAFADITNMKVHMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHTAV-NVVCSYCGNTYKNPKSLESHI  395 (459)
Q Consensus       317 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~-~~~C~~C~~~f~~~~~l~~H~  395 (459)
                      +...|.|.+|++.|.....|.+|++-|...+.+.|..||+.|....+|.+|+++|++. ||+|..|++.|+..-+|..|+
T Consensus       114 d~d~ftCrvCgK~F~lQRmlnrh~kch~~vkr~lct~cgkgfndtfdlkrh~rthtgvrpykc~~c~kaftqrcsleshl  193 (267)
T KOG3576|consen  114 DQDSFTCRVCGKKFGLQRMLNRHLKCHSDVKRHLCTFCGKGFNDTFDLKRHTRTHTGVRPYKCSLCEKAFTQRCSLESHL  193 (267)
T ss_pred             CCCeeeeehhhhhhhHHHHHHHHhhhccHHHHHHHhhccCcccchhhhhhhhccccCccccchhhhhHHHHhhccHHHHH
Confidence            3455788888888888888888888888888888888888888888888888888877 788888888888888888888


Q ss_pred             HhhcCCC----------CccccccchhccCChHHHHHHHHHhCCCCC
Q psy11588        396 RYAHTIR----------QKSICDVCGKEFKMKKRLKEHMAVHTTDRP  432 (459)
Q Consensus       396 ~~~H~~~----------~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~  432 (459)
                      +.+|...          +.|.|..||.+-.....+..|++.|+..-|
T Consensus       194 ~kvhgv~~~yaykerr~kl~vcedcg~t~~~~e~~~~h~~~~hp~Sp  240 (267)
T KOG3576|consen  194 KKVHGVQHQYAYKERRAKLYVCEDCGYTSERPEVYYLHLKLHHPFSP  240 (267)
T ss_pred             HHHcCchHHHHHHHhhhheeeecccCCCCCChhHHHHHHHhcCCCCH
Confidence            7777542          346777777777777777777777665543

>KOG3576|consensus

Probab=99.62  E-value=2.8e-16  Score=125.58  Aligned_cols=110  Identities=36%  Similarity=0.669  Sum_probs=68.3

Q ss_pred             CCccccccccccCCHHHHHHHHHHHcCCCCccccccccccccChHHHHHHHHHcCCCCCcccccccccccccchHHHHHh
Q psy11588        290 KDHCCHICKKVFLRYRNLVCHIKAVHEKVRDHQCSVCGKAFADITNMKVHMRIHTGEKKYVCETCGASFVQWGSLNQHNL  369 (459)
Q Consensus       290 ~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~  369 (459)
                      ..|.|.+|++.|.-...|.+|++ -|...+.+.|..||+.|.+.-+|++|+++|+|.+||+|..|++.|++.-+|..|++
T Consensus       116 d~ftCrvCgK~F~lQRmlnrh~k-ch~~vkr~lct~cgkgfndtfdlkrh~rthtgvrpykc~~c~kaftqrcsleshl~  194 (267)
T KOG3576|consen  116 DSFTCRVCGKKFGLQRMLNRHLK-CHSDVKRHLCTFCGKGFNDTFDLKRHTRTHTGVRPYKCSLCEKAFTQRCSLESHLK  194 (267)
T ss_pred             CeeeeehhhhhhhHHHHHHHHhh-hccHHHHHHHhhccCcccchhhhhhhhccccCccccchhhhhHHHHhhccHHHHHH
Confidence            34556666666666666666665 55555666666666666666666666666666666666666666666666666654


Q ss_pred             hhCCC------------CcccCCCCCcCCChHHHHHHHHhhcC
Q psy11588        370 VHTAV------------NVVCSYCGNTYKNPKSLESHIRYAHT  400 (459)
Q Consensus       370 ~h~~~------------~~~C~~C~~~f~~~~~l~~H~~~~H~  400 (459)
                      .-++.            .|+|+.||.+-.....+..|++.+|.
T Consensus       195 kvhgv~~~yaykerr~kl~vcedcg~t~~~~e~~~~h~~~~hp  237 (267)
T KOG3576|consen  195 KVHGVQHQYAYKERRAKLYVCEDCGYTSERPEVYYLHLKLHHP  237 (267)
T ss_pred             HHcCchHHHHHHHhhhheeeecccCCCCCChhHHHHHHHhcCC
Confidence            33322            25677777777777777777775443

>PLN03086 PRLI-interacting factor K; Provisional

Probab=99.22  E-value=2.7e-11  Score=116.09  Aligned_cols=146  Identities=22%  Similarity=0.438  Sum_probs=112.1

Q ss_pred             CccccccccccCCHHHHHHHHHHHcCCCCcccccc--ccccccChHHHHHHHHHcCCCCCcccccccccccccchHHHHH
Q psy11588        291 DHCCHICKKVFLRYRNLVCHIKAVHEKVRDHQCSV--CGKAFADITNMKVHMRIHTGEKKYVCETCGASFVQWGSLNQHN  368 (459)
Q Consensus       291 ~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~  368 (459)
                      ...|+.|..... ..+|..|..  +-......|+.  |+..|. ...+..         .+.|+.|++.|. ...|..|+
T Consensus       407 ~V~C~NC~~~i~-l~~l~lHe~--~C~r~~V~Cp~~~Cg~v~~-r~el~~---------H~~C~~Cgk~f~-~s~LekH~  472 (567)
T PLN03086        407 TVECRNCKHYIP-SRSIALHEA--YCSRHNVVCPHDGCGIVLR-VEEAKN---------HVHCEKCGQAFQ-QGEMEKHM  472 (567)
T ss_pred             eEECCCCCCccc-hhHHHHHHh--hCCCcceeCCcccccceee-cccccc---------CccCCCCCCccc-hHHHHHHH
Confidence            356888888765 456678864  33334567874  998884 233333         368999999995 67899999


Q ss_pred             hhhCCCCcccCCCCCcCCChHHHHHHHHhhcCCCCccccccchhccC----------ChHHHHHHHHHhCCCCCcccCcc
Q psy11588        369 LVHTAVNVVCSYCGNTYKNPKSLESHIRYAHTIRQKSICDVCGKEFK----------MKKRLKEHMAVHTTDRPFVCDMC  438 (459)
Q Consensus       369 ~~h~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~C~~~f~----------~~~~l~~H~~~H~~~~~~~C~~C  438 (459)
                      ..++ .++.|+ |+..+ ....|..|+. .|...+++.|++|++.|.          ..+.|..|..+. |.+++.|..|
T Consensus       473 ~~~H-kpv~Cp-Cg~~~-~R~~L~~H~~-thCp~Kpi~C~fC~~~v~~g~~~~d~~d~~s~Lt~HE~~C-G~rt~~C~~C  547 (567)
T PLN03086        473 KVFH-EPLQCP-CGVVL-EKEQMVQHQA-STCPLRLITCRFCGDMVQAGGSAMDVRDRLRGMSEHESIC-GSRTAPCDSC  547 (567)
T ss_pred             HhcC-CCccCC-CCCCc-chhHHHhhhh-ccCCCCceeCCCCCCccccCccccchhhhhhhHHHHHHhc-CCcceEcccc
Confidence            9985 689999 99755 6789999987 789999999999999995          245899999885 9999999999


Q ss_pred             ccccCChHHHHHHHHHhc
Q psy11588        439 PSAFKLKKHLQQHYKVHL  456 (459)
Q Consensus       439 ~~~f~~~~~l~~H~~~H~  456 (459)
                      |+.+. ...|..|+..-+
T Consensus       548 gk~Vr-lrdm~~H~~~~h  564 (567)
T PLN03086        548 GRSVM-LKEMDIHQIAVH  564 (567)
T ss_pred             CCeee-ehhHHHHHHHhh
Confidence            98865 456888876544

>PLN03086 PRLI-interacting factor K; Provisional

Probab=99.11  E-value=1.8e-10  Score=110.52  Aligned_cols=96  Identities=24%  Similarity=0.617  Sum_probs=47.8

Q ss_pred             ccccccccccChHHHHHHHHHcCCCCCcccccccccccccchHHHHHhhhCCC-CcccCCCCCcCC----------ChHH
Q psy11588        322 QCSVCGKAFADITNMKVHMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHTAV-NVVCSYCGNTYK----------NPKS  390 (459)
Q Consensus       322 ~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~-~~~C~~C~~~f~----------~~~~  390 (459)
                      .|+.|+..|. ...|..|+.+++  .++.|+ |++.+ ....|..|+.+|.+. ++.|+.|++.|.          ....
T Consensus       455 ~C~~Cgk~f~-~s~LekH~~~~H--kpv~Cp-Cg~~~-~R~~L~~H~~thCp~Kpi~C~fC~~~v~~g~~~~d~~d~~s~  529 (567)
T PLN03086        455 HCEKCGQAFQ-QGEMEKHMKVFH--EPLQCP-CGVVL-EKEQMVQHQASTCPLRLITCRFCGDMVQAGGSAMDVRDRLRG  529 (567)
T ss_pred             cCCCCCCccc-hHHHHHHHHhcC--CCccCC-CCCCc-chhHHHhhhhccCCCCceeCCCCCCccccCccccchhhhhhh
Confidence            4555555553 344555555543  445555 55433 334555555555444 455555555553          1235


Q ss_pred             HHHHHHhhcCCCCccccccchhccCChHHHHHHHH
Q psy11588        391 LESHIRYAHTIRQKSICDVCGKEFKMKKRLKEHMA  425 (459)
Q Consensus       391 l~~H~~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~  425 (459)
                      |..|.. . .+.+++.|..||+.+..+ .|..|+.
T Consensus       530 Lt~HE~-~-CG~rt~~C~~Cgk~Vrlr-dm~~H~~  561 (567)
T PLN03086        530 MSEHES-I-CGSRTAPCDSCGRSVMLK-EMDIHQI  561 (567)
T ss_pred             HHHHHH-h-cCCcceEccccCCeeeeh-hHHHHHH
Confidence            555555 2 245556666666555432 3445543

>PHA00733 hypothetical protein

Probab=99.08  E-value=8e-11  Score=91.81  Aligned_cols=55  Identities=20%  Similarity=0.403  Sum_probs=42.4

Q ss_pred             CCCccccccchhccCChHHHHHHHHHhCCCCCcccCccccccCChHHHHHHHHHhcC
Q psy11588        401 IRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVHLK  457 (459)
Q Consensus       401 ~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~  457 (459)
                      +.+||.|+.||+.|.+...|..|++.|  +.+|.|++|+++|.....|..|+...++
T Consensus        70 ~~kPy~C~~Cgk~Fss~s~L~~H~r~h--~~~~~C~~CgK~F~~~~sL~~H~~~~h~  124 (128)
T PHA00733         70 AVSPYVCPLCLMPFSSSVSLKQHIRYT--EHSKVCPVCGKEFRNTDSTLDHVCKKHN  124 (128)
T ss_pred             CCCCccCCCCCCcCCCHHHHHHHHhcC--CcCccCCCCCCccCCHHHHHHHHHHhcC
Confidence            367788888888888888888888766  3568888888888888888888776554

>PHA02768 hypothetical protein; Provisional

Probab=98.97  E-value=2.7e-10  Score=72.16  Aligned_cols=44  Identities=16%  Similarity=0.320  Sum_probs=36.3

Q ss_pred             ccccccchhccCChHHHHHHHHHhCCCCCcccCccccccCChHHHH
Q psy11588        404 KSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMCPSAFKLKKHLQ  449 (459)
Q Consensus       404 ~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~~C~~~f~~~~~l~  449 (459)
                      -|+|+.||+.|...+.|..|+++|+  +||+|..|++.|.+.+.|.
T Consensus         5 ~y~C~~CGK~Fs~~~~L~~H~r~H~--k~~kc~~C~k~f~~~s~l~   48 (55)
T PHA02768          5 GYECPICGEIYIKRKSMITHLRKHN--TNLKLSNCKRISLRTGEYI   48 (55)
T ss_pred             ccCcchhCCeeccHHHHHHHHHhcC--CcccCCcccceecccceeE
Confidence            3788888888888888888888887  6888888888888777653

>PHA00733 hypothetical protein

Probab=98.93  E-value=1e-09  Score=85.58  Aligned_cols=54  Identities=31%  Similarity=0.532  Sum_probs=28.6

Q ss_pred             CCCcccccccccccccchHHHHHhhhCCCCcccCCCCCcCCChHHHHHHHHhhcC
Q psy11588        346 EKKYVCETCGASFVQWGSLNQHNLVHTAVNVVCSYCGNTYKNPKSLESHIRYAHT  400 (459)
Q Consensus       346 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~C~~C~~~f~~~~~l~~H~~~~H~  400 (459)
                      ++||.|+.|++.|.+...|..|++.+ ..++.|+.|++.|.....|..|+...|.
T Consensus        71 ~kPy~C~~Cgk~Fss~s~L~~H~r~h-~~~~~C~~CgK~F~~~~sL~~H~~~~h~  124 (128)
T PHA00733         71 VSPYVCPLCLMPFSSSVSLKQHIRYT-EHSKVCPVCGKEFRNTDSTLDHVCKKHN  124 (128)
T ss_pred             CCCccCCCCCCcCCCHHHHHHHHhcC-CcCccCCCCCCccCCHHHHHHHHHHhcC
Confidence            44555555555555555555555543 1245555566666665666666554443

>KOG3993|consensus

Probab=98.76  E-value=5.9e-10  Score=99.85  Aligned_cols=190  Identities=18%  Similarity=0.255  Sum_probs=97.0

Q ss_pred             ccccccChhcccCHHHHHHHHhhccCCCCccccccccccCCHHHHHHHHHHHcCCCCcccc---ccccccccChHHHHHH
Q psy11588        263 NYKCPDCSAILLSYGGFTSHLDIHSGEKDHCCHICKKVFLRYRNLVCHIKAVHEKVRDHQC---SVCGKAFADITNMKVH  339 (459)
Q Consensus       263 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C---~~C~~~f~~~~~l~~H  339 (459)
                      .|.|..|...|.+.-.|.+|.-...-...|.|+.|+++|+-..+|..|.+ -|.-...-.=   +-=..........+.=
T Consensus       267 dyiCqLCK~kYeD~F~LAQHrC~RIV~vEYrCPEC~KVFsCPANLASHRR-WHKPR~eaa~a~~~P~k~~~~~rae~~ea  345 (500)
T KOG3993|consen  267 DYICQLCKEKYEDAFALAQHRCPRIVHVEYRCPECDKVFSCPANLASHRR-WHKPRPEAAKAGSPPPKQAVETRAEVQEA  345 (500)
T ss_pred             HHHHHHHHHhhhhHHHHhhccCCeeEEeeecCCcccccccCchhhhhhhc-ccCCchhhhhcCCCChhhhhhhhhhhhhc
Confidence            48888898888888888888643222334888888888888888888877 3421110000   0000000000000000


Q ss_pred             HHH--cCCCCCcccccccccccccchHHHHHhhhCCCC------------------cccCCCCCcCCChHHHHHHHHhhc
Q psy11588        340 MRI--HTGEKKYVCETCGASFVQWGSLNQHNLVHTAVN------------------VVCSYCGNTYKNPKSLESHIRYAH  399 (459)
Q Consensus       340 ~~~--h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~------------------~~C~~C~~~f~~~~~l~~H~~~~H  399 (459)
                      .+.  ...+..|.|..|++.|..+.-|+.|+.+|....                  +.+..++-.+...+.--.+...+-
T Consensus       346 ~rsg~dss~gi~~C~~C~KkFrRqAYLrKHqlthq~~~~~k~~a~~f~~s~~~~l~~~~~~~a~h~~a~~~~g~~vl~~a  425 (500)
T KOG3993|consen  346 ERSGDDSSSGIFSCHTCGKKFRRQAYLRKHQLTHQRAPLAKEKAPKFLLSRVIPLMHFNQAVATHSSASDSHGDEVLYVA  425 (500)
T ss_pred             cccCCcccCceeecHHhhhhhHHHHHHHHhHHhhhccccchhcccCcchhhcccccccccccccccccccccccceeeee
Confidence            000  011234667777777777777777766654321                  123333322222111111111000


Q ss_pred             CCCCccccccchhccCChHHHHHHHHHhCCCCCcccCccccccCChHHHHHHHH
Q psy11588        400 TIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMCPSAFKLKKHLQQHYK  453 (459)
Q Consensus       400 ~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~  453 (459)
                      .....-.+++|+-.+.++..---+.+.-..+..|.|.+|...|.+...|.+|+.
T Consensus       426 ~sael~~pp~~~~ppsss~~sgg~~rlg~~~q~f~~ky~~atfyss~~ltrhin  479 (500)
T KOG3993|consen  426 GSAELELPPYDGSPPSSSGSSGGYGRLGIAEQGFTCKYCPATFYSSPGLTRHIN  479 (500)
T ss_pred             ccccccCCCCCCCCcccCCCCCccccccchhhccccccchHhhhcCcchHhHhh
Confidence            011123466666666665555555554455556777777777777777777764

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=98.74  E-value=7.6e-09  Score=55.97  Aligned_cols=26  Identities=35%  Similarity=0.855  Sum_probs=21.8

Q ss_pred             HHHHHHHHhCCCCCcccCccccccCC
Q psy11588        419 RLKEHMAVHTTDRPFVCDMCPSAFKL  444 (459)
Q Consensus       419 ~l~~H~~~H~~~~~~~C~~C~~~f~~  444 (459)
                      +|..|+++|++++||.|++|+++|.+
T Consensus         1 ~l~~H~~~H~~~k~~~C~~C~k~F~~   26 (26)
T PF13465_consen    1 NLRRHMRTHTGEKPYKCPYCGKSFSN   26 (26)
T ss_dssp             HHHHHHHHHSSSSSEEESSSSEEESS
T ss_pred             CHHHHhhhcCCCCCCCCCCCcCeeCc
Confidence            47888888888888888888888864

...

>KOG3993|consensus

Probab=98.66  E-value=4e-09  Score=94.66  Aligned_cols=159  Identities=18%  Similarity=0.246  Sum_probs=96.5

Q ss_pred             cccccccChhcccCHHHHHHHHhhccCCCCccccccccccCCH----HHHHHHHHHHc-----CCCCccccccccccccC
Q psy11588        262 VNYKCPDCSAILLSYGGFTSHLDIHSGEKDHCCHICKKVFLRY----RNLVCHIKAVH-----EKVRDHQCSVCGKAFAD  332 (459)
Q Consensus       262 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~----~~l~~H~~~~h-----~~~~~~~C~~C~~~f~~  332 (459)
                      ..|+|+.|++.|.-..+|..|.++|.....--     +.-...    ..-..-.++.-     ..+..|.|.+|++.|..
T Consensus       294 vEYrCPEC~KVFsCPANLASHRRWHKPR~eaa-----~a~~~P~k~~~~~rae~~ea~rsg~dss~gi~~C~~C~KkFrR  368 (500)
T KOG3993|consen  294 VEYRCPECDKVFSCPANLASHRRWHKPRPEAA-----KAGSPPPKQAVETRAEVQEAERSGDDSSSGIFSCHTCGKKFRR  368 (500)
T ss_pred             eeecCCcccccccCchhhhhhhcccCCchhhh-----hcCCCChhhhhhhhhhhhhccccCCcccCceeecHHhhhhhHH
Confidence            46999999999999999999999985432110     000000    00001111111     22346999999999999


Q ss_pred             hHHHHHHHHHcCCCCC-----------------cccccccccccccchHHHHHhhhCCC--CcccCCCCCcCCChHHHHH
Q psy11588        333 ITNMKVHMRIHTGEKK-----------------YVCETCGASFVQWGSLNQHNLVHTAV--NVVCSYCGNTYKNPKSLES  393 (459)
Q Consensus       333 ~~~l~~H~~~h~~~~~-----------------~~C~~C~~~f~~~~~l~~H~~~h~~~--~~~C~~C~~~f~~~~~l~~  393 (459)
                      ...|+.|+.+|+....                 +.+..++-.+.....--.+...+.+.  ...+++++..+.++..--.
T Consensus       369 qAYLrKHqlthq~~~~~k~~a~~f~~s~~~~l~~~~~~~a~h~~a~~~~g~~vl~~a~sael~~pp~~~~ppsss~~sgg  448 (500)
T KOG3993|consen  369 QAYLRKHQLTHQRAPLAKEKAPKFLLSRVIPLMHFNQAVATHSSASDSHGDEVLYVAGSAELELPPYDGSPPSSSGSSGG  448 (500)
T ss_pred             HHHHHHhHHhhhccccchhcccCcchhhcccccccccccccccccccccccceeeeeccccccCCCCCCCCcccCCCCCc
Confidence            9999999887753211                 23444444333333222222222222  2457888877776654444


Q ss_pred             HHHhhcCCCCccccccchhccCChHHHHHHHHH
Q psy11588        394 HIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAV  426 (459)
Q Consensus       394 H~~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~  426 (459)
                      +.+ .-...+.|.|.+|.-.|.+...|.+|+..
T Consensus       449 ~~r-lg~~~q~f~~ky~~atfyss~~ltrhin~  480 (500)
T KOG3993|consen  449 YGR-LGIAEQGFTCKYCPATFYSSPGLTRHINK  480 (500)
T ss_pred             ccc-ccchhhccccccchHhhhcCcchHhHhhh
Confidence            443 12224568999999999999999999874

>PHA02768 hypothetical protein; Provisional

Probab=98.61  E-value=2.3e-08  Score=63.46  Aligned_cols=42  Identities=21%  Similarity=0.530  Sum_probs=26.5

Q ss_pred             cccccccccccChHHHHHHHHHcCCCCCcccccccccccccchH
Q psy11588        321 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCETCGASFVQWGSL  364 (459)
Q Consensus       321 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l  364 (459)
                      |.|+.||+.|.....|..|+++|+  ++|+|..|++.|...+.|
T Consensus         6 y~C~~CGK~Fs~~~~L~~H~r~H~--k~~kc~~C~k~f~~~s~l   47 (55)
T PHA02768          6 YECPICGEIYIKRKSMITHLRKHN--TNLKLSNCKRISLRTGEY   47 (55)
T ss_pred             cCcchhCCeeccHHHHHHHHHhcC--CcccCCcccceeccccee
Confidence            566666666666666666666665  456666666666655443

>PHA00616 hypothetical protein

Probab=98.53  E-value=4.6e-08  Score=58.85  Aligned_cols=34  Identities=24%  Similarity=0.403  Sum_probs=30.9

Q ss_pred             ccccccchhccCChHHHHHHHHHhCCCCCcccCc
Q psy11588        404 KSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDM  437 (459)
Q Consensus       404 ~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~~  437 (459)
                      ||+|+.||+.|..++.|..|++.|++++++.|+.
T Consensus         1 pYqC~~CG~~F~~~s~l~~H~r~~hg~~~~~~~~   34 (44)
T PHA00616          1 MYQCLRCGGIFRKKKEVIEHLLSVHKQNKLTLEY   34 (44)
T ss_pred             CCccchhhHHHhhHHHHHHHHHHhcCCCccceeE
Confidence            6899999999999999999999999999988874

>PHA00732 hypothetical protein

Probab=98.37  E-value=2.1e-07  Score=65.42  Aligned_cols=46  Identities=35%  Similarity=0.671  Sum_probs=27.1

Q ss_pred             cccCCCCCcCCChHHHHHHHHhhcCCCCccccccchhccCChHHHHHHHHHh
Q psy11588        376 VVCSYCGNTYKNPKSLESHIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVH  427 (459)
Q Consensus       376 ~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~H  427 (459)
                      |.|+.|++.|.+...|..|++..|.   ++.|+.||+.|.   .|..|+.++
T Consensus         2 y~C~~Cgk~F~s~s~Lk~H~r~~H~---~~~C~~CgKsF~---~l~~H~~~~   47 (79)
T PHA00732          2 FKCPICGFTTVTLFALKQHARRNHT---LTKCPVCNKSYR---RLNQHFYSQ   47 (79)
T ss_pred             ccCCCCCCccCCHHHHHHHhhcccC---CCccCCCCCEeC---Chhhhhccc
Confidence            5566666666666666666653343   245666666665   355665444

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=98.37  E-value=2.6e-07  Score=49.95  Aligned_cols=25  Identities=60%  Similarity=1.120  Sum_probs=18.3

Q ss_pred             HHHHHHHHcCCCCCccccccccccc
Q psy11588        335 NMKVHMRIHTGEKKYVCETCGASFV  359 (459)
Q Consensus       335 ~l~~H~~~h~~~~~~~C~~C~~~f~  359 (459)
                      +|..|+++|.+++||.|+.|++.|.
T Consensus         1 ~l~~H~~~H~~~k~~~C~~C~k~F~   25 (26)
T PF13465_consen    1 NLRRHMRTHTGEKPYKCPYCGKSFS   25 (26)
T ss_dssp             HHHHHHHHHSSSSSEEESSSSEEES
T ss_pred             CHHHHhhhcCCCCCCCCCCCcCeeC
Confidence            3667777777777777777777775

...

>KOG1146|consensus

Probab=98.31  E-value=7.7e-07  Score=91.67  Aligned_cols=76  Identities=14%  Similarity=0.266  Sum_probs=58.7

Q ss_pred             cccCCCCCcCCChHHHHHHHHhhcCCCCccccccchhccCChHHHHHHHHHh-----------------CCCCCcccCcc
Q psy11588        376 VVCSYCGNTYKNPKSLESHIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVH-----------------TTDRPFVCDMC  438 (459)
Q Consensus       376 ~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~H-----------------~~~~~~~C~~C  438 (459)
                      +.|..|++.|...-.+. |+-.    ..+|.|..|...|.....|..|.+.-                 ..-.+| |..|
T Consensus      1261 ~~c~~~~~~~~~~~~~~-~l~~----~~~~~~~~~~~~~~~~~~l~~~~~k~~~~~~~~~~~~~~~l~~~d~~~~-c~~c 1334 (1406)
T KOG1146|consen 1261 GECGAVDELLTPSFGIS-TLDV----THRYLCRQCKMAFDGEAPLTAHQRKFCFAGRGSGGSMPPPLRVPDCTYH-CLAC 1334 (1406)
T ss_pred             chhhhccccccCcccee-eccc----chhHHHHHHHhhhcchhHHHHHHHHHHhccCccccCCCCcccCcccccc-chHH
Confidence            45888888887776666 5542    35699999999999999999998532                 122446 9999


Q ss_pred             ccccCChHHHHHHHHHhcC
Q psy11588        439 PSAFKLKKHLQQHYKVHLK  457 (459)
Q Consensus       439 ~~~f~~~~~l~~H~~~H~~  457 (459)
                      ...|.....|+.||++-++
T Consensus      1335 ~~~~~~~~alqihm~~~~~ 1353 (1406)
T KOG1146|consen 1335 EVLLSGREALQIHMRSSAH 1353 (1406)
T ss_pred             HhhcchhHHHHHHHHHhhh
Confidence            9999999999999986543

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=98.20  E-value=3.1e-06  Score=55.27  Aligned_cols=36  Identities=28%  Similarity=0.682  Sum_probs=15.4

Q ss_pred             cccCCCCCcCCChHHHHHHHHhhcCCC-Cccccccchh
Q psy11588        376 VVCSYCGNTYKNPKSLESHIRYAHTIR-QKSICDVCGK  412 (459)
Q Consensus       376 ~~C~~C~~~f~~~~~l~~H~~~~H~~~-~~~~C~~C~~  412 (459)
                      |.||+|++ ..+...|..|+...|..+ +.+.||+|..
T Consensus         3 f~CP~C~~-~~~~~~L~~H~~~~H~~~~~~v~CPiC~~   39 (54)
T PF05605_consen    3 FTCPYCGK-GFSESSLVEHCEDEHRSESKNVVCPICSS   39 (54)
T ss_pred             cCCCCCCC-ccCHHHHHHHHHhHCcCCCCCccCCCchh
Confidence            44444444 233344444444444432 2344444444

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>PHA00616 hypothetical protein

Probab=98.17  E-value=1.3e-06  Score=52.70  Aligned_cols=34  Identities=29%  Similarity=0.482  Sum_probs=28.1

Q ss_pred             ccccchhhHhhhhHHHHHHHHhhhccCCCCCCCceeeccc
Q psy11588         56 VYHCADCEQVFLDKFVLELHLKIEHKDNMFPKSHWFVCKM   95 (459)
Q Consensus        56 ~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~~C~~   95 (459)
                      +|+|..||+.|..+.+|..|++.|++++      ++.|+.
T Consensus         1 pYqC~~CG~~F~~~s~l~~H~r~~hg~~------~~~~~~   34 (44)
T PHA00616          1 MYQCLRCGGIFRKKKEVIEHLLSVHKQN------KLTLEY   34 (44)
T ss_pred             CCccchhhHHHhhHHHHHHHHHHhcCCC------ccceeE
Confidence            5889999999999999999999998887      566654

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=98.14  E-value=3.8e-06  Score=54.86  Aligned_cols=51  Identities=27%  Similarity=0.539  Sum_probs=41.2

Q ss_pred             ccccccchhccCChHHHHHHHHH-hCCC-CCcccCccccccCChHHHHHHHHHhcC
Q psy11588        404 KSICDVCGKEFKMKKRLKEHMAV-HTTD-RPFVCDMCPSAFKLKKHLQQHYKVHLK  457 (459)
Q Consensus       404 ~~~C~~C~~~f~~~~~l~~H~~~-H~~~-~~~~C~~C~~~f~~~~~l~~H~~~H~~  457 (459)
                      .|.||+|++ -.+...|..|+.. |..+ +.+.|++|...+.  .+|..|+..+++
T Consensus         2 ~f~CP~C~~-~~~~~~L~~H~~~~H~~~~~~v~CPiC~~~~~--~~l~~Hl~~~H~   54 (54)
T PF05605_consen    2 SFTCPYCGK-GFSESSLVEHCEDEHRSESKNVVCPICSSRVT--DNLIRHLNSQHR   54 (54)
T ss_pred             CcCCCCCCC-ccCHHHHHHHHHhHCcCCCCCccCCCchhhhh--hHHHHHHHHhcC
Confidence            489999999 5667899999875 5443 5799999998755  499999988764

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>PHA00732 hypothetical protein

Probab=98.11  E-value=2.2e-06  Score=60.35  Aligned_cols=44  Identities=30%  Similarity=0.566  Sum_probs=23.2

Q ss_pred             ccccccchhccCChHHHHHHHHH-hCCCCCcccCccccccCChHHHHHHHH
Q psy11588        404 KSICDVCGKEFKMKKRLKEHMAV-HTTDRPFVCDMCPSAFKLKKHLQQHYK  453 (459)
Q Consensus       404 ~~~C~~C~~~f~~~~~l~~H~~~-H~~~~~~~C~~C~~~f~~~~~l~~H~~  453 (459)
                      ||.|+.||+.|.+...|..|++. |.   ++.|+.|+++|.   .|..|++
T Consensus         1 py~C~~Cgk~F~s~s~Lk~H~r~~H~---~~~C~~CgKsF~---~l~~H~~   45 (79)
T PHA00732          1 MFKCPICGFTTVTLFALKQHARRNHT---LTKCPVCNKSYR---RLNQHFY   45 (79)
T ss_pred             CccCCCCCCccCCHHHHHHHhhcccC---CCccCCCCCEeC---Chhhhhc
Confidence            35555555555555555555553 33   235555555554   3445543

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.96  E-value=5.5e-06  Score=43.48  Aligned_cols=23  Identities=30%  Similarity=0.823  Sum_probs=12.8

Q ss_pred             cccCccccccCChHHHHHHHHHh
Q psy11588        433 FVCDMCPSAFKLKKHLQQHYKVH  455 (459)
Q Consensus       433 ~~C~~C~~~f~~~~~l~~H~~~H  455 (459)
                      |.|+.|++.|.+...|..|+++|
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~~H   23 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMRRH   23 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHhHC
Confidence            45555555555555555555543

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.89  E-value=7.3e-06  Score=43.01  Aligned_cols=23  Identities=48%  Similarity=0.898  Sum_probs=17.3

Q ss_pred             cccccchhccCChHHHHHHHHHh
Q psy11588        405 SICDVCGKEFKMKKRLKEHMAVH  427 (459)
Q Consensus       405 ~~C~~C~~~f~~~~~l~~H~~~H  427 (459)
                      |.|++|++.|.++..|..|++.|
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~~H   23 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMRRH   23 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHhHC
Confidence            56777777777777777777764

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=97.75  E-value=1.7e-05  Score=59.93  Aligned_cols=73  Identities=25%  Similarity=0.444  Sum_probs=17.8

Q ss_pred             ccccccccccccchHHHHHhhhCCCCcccCCCCCcCCChHHHHHHHHhhcCCCCccccccchhccCChHHHHHHHHHh
Q psy11588        350 VCETCGASFVQWGSLNQHNLVHTAVNVVCSYCGNTYKNPKSLESHIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVH  427 (459)
Q Consensus       350 ~C~~C~~~f~~~~~l~~H~~~h~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~H  427 (459)
                      +|..|+..|.+...|..|+...++..+.   ....+.....+..+++.  .....+.|.+|++.|.+...|..||+.+
T Consensus         1 ~C~~C~~~f~~~~~l~~H~~~~H~~~~~---~~~~l~~~~~~~~~~~~--~~~~~~~C~~C~~~f~s~~~l~~Hm~~~   73 (100)
T PF12756_consen    1 QCLFCDESFSSVDDLLQHMKKKHGFDIP---DQKYLVDPNRLLNYLRK--KVKESFRCPYCNKTFRSREALQEHMRSK   73 (100)
T ss_dssp             -----------------------------------------------------SSEEBSSSS-EESSHHHHHHHHHHT
T ss_pred             Cccccccccccccccccccccccccccc---ccccccccccccccccc--ccCCCCCCCccCCCCcCHHHHHHHHcCc
Confidence            4777777777777777777655543221   11222234444444431  1223577888888888888888887754

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=97.67  E-value=3.5e-05  Score=40.86  Aligned_cols=23  Identities=39%  Similarity=0.925  Sum_probs=11.5

Q ss_pred             cccCccccccCChHHHHHHHHHh
Q psy11588        433 FVCDMCPSAFKLKKHLQQHYKVH  455 (459)
Q Consensus       433 ~~C~~C~~~f~~~~~l~~H~~~H  455 (459)
                      |.|++|++.|.+...|..|+++|
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~~~   23 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMRTH   23 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHHHH
T ss_pred             CCCcCCCCcCCcHHHHHHHHHhh
Confidence            44555555555555555555544

...

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=97.59  E-value=4.6e-05  Score=40.37  Aligned_cols=24  Identities=42%  Similarity=0.923  Sum_probs=15.7

Q ss_pred             cccccchhccCChHHHHHHHHHhC
Q psy11588        405 SICDVCGKEFKMKKRLKEHMAVHT  428 (459)
Q Consensus       405 ~~C~~C~~~f~~~~~l~~H~~~H~  428 (459)
                      |.|++|++.|.+...|..|+++|+
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~~~H   24 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMRTHH   24 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHHHHS
T ss_pred             CCCcCCCCcCCcHHHHHHHHHhhC
Confidence            567777777777777777777653

...

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=97.56  E-value=3.9e-05  Score=42.02  Aligned_cols=25  Identities=36%  Similarity=0.760  Sum_probs=14.7

Q ss_pred             CcccCccccccCChHHHHHHHHHhc
Q psy11588        432 PFVCDMCPSAFKLKKHLQQHYKVHL  456 (459)
Q Consensus       432 ~~~C~~C~~~f~~~~~l~~H~~~H~  456 (459)
                      ||.|..|++.|.+...|..|++.|.
T Consensus         1 ~~~C~~C~~~F~~~~~l~~H~~~h~   25 (27)
T PF13912_consen    1 PFECDECGKTFSSLSALREHKRSHC   25 (27)
T ss_dssp             SEEETTTTEEESSHHHHHHHHCTTT
T ss_pred             CCCCCccCCccCChhHHHHHhHHhc
Confidence            4556666666666666666665554

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=97.50  E-value=5.9e-05  Score=56.96  Aligned_cols=71  Identities=21%  Similarity=0.437  Sum_probs=14.3

Q ss_pred             cccccccccChHHHHHHHHHcCCCCCcccccccccccccchHHHHHhhhCCCCcccCCCCCcCCChHHHHHHHHh
Q psy11588        323 CSVCGKAFADITNMKVHMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHTAVNVVCSYCGNTYKNPKSLESHIRY  397 (459)
Q Consensus       323 C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~C~~C~~~f~~~~~l~~H~~~  397 (459)
                      |..|+..|.+...|..|+...++...-    ....+.....+..+.+.-....+.|..|++.|.+...|..|++.
T Consensus         2 C~~C~~~f~~~~~l~~H~~~~H~~~~~----~~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~f~s~~~l~~Hm~~   72 (100)
T PF12756_consen    2 CLFCDESFSSVDDLLQHMKKKHGFDIP----DQKYLVDPNRLLNYLRKKVKESFRCPYCNKTFRSREALQEHMRS   72 (100)
T ss_dssp             ---------------------------------------------------SSEEBSSSS-EESSHHHHHHHHHH
T ss_pred             ccccccccccccccccccccccccccc----cccccccccccccccccccCCCCCCCccCCCCcCHHHHHHHHcC
Confidence            566666666666666666544432110    11112233333333333223346666666666666666666663

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=97.45  E-value=6.2e-05  Score=41.21  Aligned_cols=26  Identities=38%  Similarity=0.677  Sum_probs=21.0

Q ss_pred             ccccccchhccCChHHHHHHHHHhCC
Q psy11588        404 KSICDVCGKEFKMKKRLKEHMAVHTT  429 (459)
Q Consensus       404 ~~~C~~C~~~f~~~~~l~~H~~~H~~  429 (459)
                      ||.|..|++.|.+..+|..|++.|.+
T Consensus         1 ~~~C~~C~~~F~~~~~l~~H~~~h~~   26 (27)
T PF13912_consen    1 PFECDECGKTFSSLSALREHKRSHCS   26 (27)
T ss_dssp             SEEETTTTEEESSHHHHHHHHCTTTT
T ss_pred             CCCCCccCCccCChhHHHHHhHHhcC
Confidence            57888888888888888888877753

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=97.40  E-value=4.1e-05  Score=66.68  Aligned_cols=51  Identities=35%  Similarity=0.726  Sum_probs=36.9

Q ss_pred             Ccccccc--chhccCChHHHHHHHHH-h------------------CCCCCcccCccccccCChHHHHHHHH
Q psy11588        403 QKSICDV--CGKEFKMKKRLKEHMAV-H------------------TTDRPFVCDMCPSAFKLKKHLQQHYK  453 (459)
Q Consensus       403 ~~~~C~~--C~~~f~~~~~l~~H~~~-H------------------~~~~~~~C~~C~~~f~~~~~l~~H~~  453 (459)
                      +||+|++  |.|.+.+...|+.|+.- |                  ...|||+|++|+|.|.+...|+.|..
T Consensus       348 KpykCpV~gC~K~YknqnGLKYH~lhGH~~~~~~~~p~p~~~~~F~~~~KPYrCevC~KRYKNlNGLKYHr~  419 (423)
T COG5189         348 KPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKPYRCEVCDKRYKNLNGLKYHRK  419 (423)
T ss_pred             ceecCCCCCchhhhccccchhhhhhccccCcccCCCCCccccccccccCCceeccccchhhccCccceeccc
Confidence            5666665  66666666666666542 2                  23589999999999999999998854

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.00  E-value=0.00049  Score=42.44  Aligned_cols=35  Identities=20%  Similarity=0.610  Sum_probs=17.5

Q ss_pred             hcCCCCccccccchhccCChHHHHHHHHHhCCCCC
Q psy11588        398 AHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRP  432 (459)
Q Consensus       398 ~H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~  432 (459)
                      ....+.|-.|++|+..+....+|.+|+.++++.+|
T Consensus        18 ~~~S~~PatCP~C~a~~~~srnLrRHle~~H~~k~   52 (54)
T PF09237_consen   18 KSQSEQPATCPICGAVIRQSRNLRRHLEIRHFKKP   52 (54)
T ss_dssp             CCTTS--EE-TTT--EESSHHHHHHHHHHHTTTS-
T ss_pred             hhccCCCCCCCcchhhccchhhHHHHHHHHhcccC
Confidence            34445566666666666666666666666655544

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>KOG1146|consensus

Probab=97.00  E-value=0.00023  Score=74.20  Aligned_cols=155  Identities=16%  Similarity=0.182  Sum_probs=98.4

Q ss_pred             cccccchhhccChhHHHHhhhhhc-CCCccccCCCCCCCchhhHhHHHHHHHHHHhccccCCcccchh--hcc--cceee
Q psy11588        182 HSCQKCEESFDNCNNLWSHMFIKH-ENSDFVCNLCPSHSKVLVRYVHSAVRHMKKHHKLQLSIPKAHN--YFR--KKTVI  256 (459)
Q Consensus       182 ~~C~~C~~~f~~~~~l~~H~~~~~-~~~~~~C~~C~~~f~~~~~~~~~l~~H~~~h~~~~~~~~~~~~--~~~--~~~~~  256 (459)
                      ..|.-|+..+.+...+..|+..-+ ..+.|.|+.|+..|    .....|..||+..+.+.-. ..|..  ...  .....
T Consensus       437 ~e~~~~e~~~~s~r~~~~~t~~L~S~~kt~~cpkc~~~y----k~a~~L~vhmRskhp~~~~-~~c~~gq~~~~~arg~~  511 (1406)
T KOG1146|consen  437 VELTKAEPLLESKRSLEGQTVVLHSFFKTLKCPKCNWHY----KLAQTLGVHMRSKHPESQS-AYCKAGQNHPRLARGEV  511 (1406)
T ss_pred             ccccchhhhhhhhcccccceeeeecccccccCCccchhh----hhHHHhhhcccccccccch-hHhHhcccccccccccc
Confidence            457777777877777777775433 34678888888888    8888888888874433211 11111  100  11111


Q ss_pred             ecCCCcccccccChhcccCHHHHHHHHhhc--cC-----------------------------------------CCCcc
Q psy11588        257 HVNKKVNYKCPDCSAILLSYGGFTSHLDIH--SG-----------------------------------------EKDHC  293 (459)
Q Consensus       257 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h--~~-----------------------------------------~~~~~  293 (459)
                      -.....+|.|..|...+....+|.+|++.-  ..                                         ...|.
T Consensus       512 ~~~~~~p~~C~~C~~stttng~LsihlqS~~h~~~lee~~~~~g~~v~~~~~~v~s~~P~~ag~~~~ags~~pktkP~~~  591 (1406)
T KOG1146|consen  512 YRCPGKPYPCRACNYSTTTNGNLSIHLQSDLHRNELEEAEENAGEQVRLLPASVTSAVPEEAGLGPSAGSSGPKTKPSWR  591 (1406)
T ss_pred             ccCCCCcccceeeeeeeecchHHHHHHHHHhhHHHHHHHHhccccchhhhhhhhcccCcccccCCCCCCCCCCCCCCCcc
Confidence            222356899999999999999999998531  10                                         11378


Q ss_pred             ccccccccCCHHHHHHHHHHHcCCCCccccccccccccChHHHHHHHH
Q psy11588        294 CHICKKVFLRYRNLVCHIKAVHEKVRDHQCSVCGKAFADITNMKVHMR  341 (459)
Q Consensus       294 C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~  341 (459)
                      |.+|++..+-..+|..|+...+....+..+..++..+.....+..+.+
T Consensus       592 C~vc~yetniarnlrihmtss~~s~~p~~~Lq~~it~~l~~~~~~~~~  639 (1406)
T KOG1146|consen  592 CEVCSYETNIARNLRIHMTASPSSSPPSLVLQQNITSSLASLLGGQGR  639 (1406)
T ss_pred             hhhhcchhhhhhccccccccCCCCCChHHHhhhcchhhccccccCcCC
Confidence            888888888888888888765554444555555555554444444433

>smart00355 ZnF_C2H2 zinc finger

Probab=96.94  E-value=0.00079  Score=36.16  Aligned_cols=23  Identities=35%  Similarity=0.787  Sum_probs=12.0

Q ss_pred             cccCccccccCChHHHHHHHHHh
Q psy11588        433 FVCDMCPSAFKLKKHLQQHYKVH  455 (459)
Q Consensus       433 ~~C~~C~~~f~~~~~l~~H~~~H  455 (459)
                      |.|+.|++.|.+...|..|++.|
T Consensus         1 ~~C~~C~~~f~~~~~l~~H~~~H   23 (26)
T smart00355        1 YRCPECGKVFKSKSALKEHMRTH   23 (26)
T ss_pred             CCCCCCcchhCCHHHHHHHHHHh
Confidence            34555555555555555555544

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=96.89  E-value=0.00078  Score=35.53  Aligned_cols=23  Identities=30%  Similarity=0.648  Sum_probs=13.6

Q ss_pred             cccCccccccCChHHHHHHHHHhc
Q psy11588        433 FVCDMCPSAFKLKKHLQQHYKVHL  456 (459)
Q Consensus       433 ~~C~~C~~~f~~~~~l~~H~~~H~  456 (459)
                      |+|+.|+.... ...|.+|+++|+
T Consensus         1 y~C~~C~y~t~-~~~l~~H~~~~H   23 (24)
T PF13909_consen    1 YKCPHCSYSTS-KSNLKRHLKRHH   23 (24)
T ss_dssp             EE-SSSS-EES-HHHHHHHHHHHH
T ss_pred             CCCCCCCCcCC-HHHHHHHHHhhC
Confidence            56666666665 666666666654

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=96.85  E-value=0.00042  Score=60.59  Aligned_cols=60  Identities=23%  Similarity=0.551  Sum_probs=47.9

Q ss_pred             cCCccccch--hhHhhhhHHHHHHHHhhhcc-----CCCC--------CCCceeecccCCcceeeehhHHhhhhhh
Q psy11588         53 TKDVYHCAD--CEQVFLDKFVLELHLKIEHK-----DNMF--------PKSHWFVCKMCGHRLFMRLSDLRRHMQD  113 (459)
Q Consensus        53 ~~~~~~C~~--C~~~f~~~~~L~~H~~~h~~-----~~~~--------~~~~~~~C~~C~~~~f~~~~~l~~H~~~  113 (459)
                      .++||+|++  |+|.+++...|+-|+.-=|.     +.|.        ...+||.|++|+++ |.....|+.|...
T Consensus       346 d~KpykCpV~gC~K~YknqnGLKYH~lhGH~~~~~~~~p~p~~~~~F~~~~KPYrCevC~KR-YKNlNGLKYHr~H  420 (423)
T COG5189         346 DGKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKPYRCEVCDKR-YKNLNGLKYHRKH  420 (423)
T ss_pred             cCceecCCCCCchhhhccccchhhhhhccccCcccCCCCCccccccccccCCceeccccchh-hccCccceecccc
Confidence            458999997  99999999999999874331     1111        24479999999999 9999999999764

>smart00355 ZnF_C2H2 zinc finger

Probab=96.81  E-value=0.0012  Score=35.47  Aligned_cols=24  Identities=54%  Similarity=0.811  Sum_probs=15.9

Q ss_pred             cccccchhccCChHHHHHHHHHhC
Q psy11588        405 SICDVCGKEFKMKKRLKEHMAVHT  428 (459)
Q Consensus       405 ~~C~~C~~~f~~~~~l~~H~~~H~  428 (459)
                      |.|+.|++.|.+...|..|++.|.
T Consensus         1 ~~C~~C~~~f~~~~~l~~H~~~H~   24 (26)
T smart00355        1 YRCPECGKVFKSKSALKEHMRTHX   24 (26)
T ss_pred             CCCCCCcchhCCHHHHHHHHHHhc
Confidence            456677777777777777766553

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=96.77  E-value=0.00075  Score=41.67  Aligned_cols=35  Identities=20%  Similarity=0.472  Sum_probs=17.9

Q ss_pred             HcCCCCccccccccccccChHHHHHHHHHcCCCCC
Q psy11588        314 VHEKVRDHQCSVCGKAFADITNMKVHMRIHTGEKK  348 (459)
Q Consensus       314 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~  348 (459)
                      .+..+.|..|++|+..+.+..+|++|+.+.++.+|
T Consensus        18 ~~~S~~PatCP~C~a~~~~srnLrRHle~~H~~k~   52 (54)
T PF09237_consen   18 KSQSEQPATCPICGAVIRQSRNLRRHLEIRHFKKP   52 (54)
T ss_dssp             CCTTS--EE-TTT--EESSHHHHHHHHHHHTTTS-
T ss_pred             hhccCCCCCCCcchhhccchhhHHHHHHHHhcccC
Confidence            34455566666666666666666666666555543

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>KOG2231|consensus

Probab=96.58  E-value=0.0053  Score=60.77  Aligned_cols=110  Identities=23%  Similarity=0.423  Sum_probs=67.7

Q ss_pred             cccccchhhccChhHHHHhhhhhcCCCccccCCCCCCCch-----hhHhHHHHHHHHHHhccccCCcccchhhcccceee
Q psy11588        182 HSCQKCEESFDNCNNLWSHMFIKHENSDFVCNLCPSHSKV-----LVRYVHSAVRHMKKHHKLQLSIPKAHNYFRKKTVI  256 (459)
Q Consensus       182 ~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~~f~~-----~~~~~~~l~~H~~~h~~~~~~~~~~~~~~~~~~~~  256 (459)
                      ..|..| ..|.+...|+.|+...|  +.+.|.+|-..-+.     .......|..|++.-....       .+       
T Consensus       116 ~~~~~c-~~~~s~~~Lk~H~~~~H--~~~~c~lC~~~~kif~~e~k~Yt~~el~~h~~~gd~d~-------~s-------  178 (669)
T KOG2231|consen  116 KECLHC-TEFKSVENLKNHMRDQH--KLHLCSLCLQNLKIFINERKLYTRAELNLHLMFGDPDD-------ES-------  178 (669)
T ss_pred             CCCccc-cchhHHHHHHHHHHHhh--hhhccccccccceeeeeeeehehHHHHHHHHhcCCCcc-------cc-------
Confidence            358888 88889999999997666  35667777432111     1134556666665422100       00       


Q ss_pred             ecCCCcccccccChhcccCHHHHHHHHhhccCCCCccccccc------cccCCHHHHHHHHHHHc
Q psy11588        257 HVNKKVNYKCPDCSAILLSYGGFTSHLDIHSGEKDHCCHICK------KVFLRYRNLVCHIKAVH  315 (459)
Q Consensus       257 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~------~~f~~~~~l~~H~~~~h  315 (459)
                      .   ...-.|..|...|....+|.+|++.++    |.|..|+      ..|.....|..|.+..|
T Consensus       179 ~---rGhp~C~~C~~~fld~~el~rH~~~~h----~~chfC~~~~~~neyy~~~~dLe~HfR~~H  236 (669)
T KOG2231|consen  179 C---RGHPLCKFCHERFLDDDELYRHLRFDH----EFCHFCDYKTGQNEYYNDYDDLEEHFRKGH  236 (669)
T ss_pred             c---cCCccchhhhhhhccHHHHHHhhccce----eheeecCcccccchhcccchHHHHHhhhcC
Confidence            0   112468888888888888888887654    4465553      45666777888877655

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=96.49  E-value=0.0016  Score=34.74  Aligned_cols=22  Identities=36%  Similarity=0.895  Sum_probs=13.7

Q ss_pred             cccCccccccCChHHHHHHHHH
Q psy11588        433 FVCDMCPSAFKLKKHLQQHYKV  454 (459)
Q Consensus       433 ~~C~~C~~~f~~~~~l~~H~~~  454 (459)
                      |.|++|++.|.+...|+.|++.
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~s   22 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLRS   22 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHTT
T ss_pred             CCCCCCCCCcCCHHHHHHHHCc
Confidence            4566666666666666666653

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=96.41  E-value=0.0019  Score=34.06  Aligned_cols=23  Identities=30%  Similarity=0.522  Sum_probs=14.2

Q ss_pred             cccccchhccCChHHHHHHHHHhC
Q psy11588        405 SICDVCGKEFKMKKRLKEHMAVHT  428 (459)
Q Consensus       405 ~~C~~C~~~f~~~~~l~~H~~~H~  428 (459)
                      |+|+.|+.... ...|..|+++|+
T Consensus         1 y~C~~C~y~t~-~~~l~~H~~~~H   23 (24)
T PF13909_consen    1 YKCPHCSYSTS-KSNLKRHLKRHH   23 (24)
T ss_dssp             EE-SSSS-EES-HHHHHHHHHHHH
T ss_pred             CCCCCCCCcCC-HHHHHHHHHhhC
Confidence            56777777666 667777776654

>KOG2231|consensus

Probab=96.40  E-value=0.0075  Score=59.74  Aligned_cols=103  Identities=23%  Similarity=0.467  Sum_probs=54.3

Q ss_pred             cccccccccCCHHHHHHHHHHHcCCCCcccccccc---------ccccChHHHHHHHHHcCC-CC----Ccccccccccc
Q psy11588        293 CCHICKKVFLRYRNLVCHIKAVHEKVRDHQCSVCG---------KAFADITNMKVHMRIHTG-EK----KYVCETCGASF  358 (459)
Q Consensus       293 ~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C~---------~~f~~~~~l~~H~~~h~~-~~----~~~C~~C~~~f  358 (459)
                      .|..| ..|.+...|+.|+...|..   +.|.+|-         ...-+..+|..|+..-.. ++    .-.|..|...|
T Consensus       117 ~~~~c-~~~~s~~~Lk~H~~~~H~~---~~c~lC~~~~kif~~e~k~Yt~~el~~h~~~gd~d~~s~rGhp~C~~C~~~f  192 (669)
T KOG2231|consen  117 ECLHC-TEFKSVENLKNHMRDQHKL---HLCSLCLQNLKIFINERKLYTRAELNLHLMFGDPDDESCRGHPLCKFCHERF  192 (669)
T ss_pred             CCccc-cchhHHHHHHHHHHHhhhh---hccccccccceeeeeeeehehHHHHHHHHhcCCCccccccCCccchhhhhhh
Confidence            35555 5555666666666545532   2333321         112234555555543211 11    13577777777


Q ss_pred             cccchHHHHHhhhCCCCccc---CCCCCcCCChHHHHHHHHhhc
Q psy11588        359 VQWGSLNQHNLVHTAVNVVC---SYCGNTYKNPKSLESHIRYAH  399 (459)
Q Consensus       359 ~~~~~l~~H~~~h~~~~~~C---~~C~~~f~~~~~l~~H~~~~H  399 (459)
                      .....|.+|++.++..-..|   +.++..|.+...|..|.+..|
T Consensus       193 ld~~el~rH~~~~h~~chfC~~~~~~neyy~~~~dLe~HfR~~H  236 (669)
T KOG2231|consen  193 LDDDELYRHLRFDHEFCHFCDYKTGQNEYYNDYDDLEEHFRKGH  236 (669)
T ss_pred             ccHHHHHHhhccceeheeecCcccccchhcccchHHHHHhhhcC
Confidence            77777777776655332223   223455677777777777544

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=96.30  E-value=0.002  Score=34.31  Aligned_cols=22  Identities=32%  Similarity=0.821  Sum_probs=16.5

Q ss_pred             cccccchhccCChHHHHHHHHH
Q psy11588        405 SICDVCGKEFKMKKRLKEHMAV  426 (459)
Q Consensus       405 ~~C~~C~~~f~~~~~l~~H~~~  426 (459)
                      |.|++|++.|.+...|..|++.
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~s   22 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLRS   22 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHTT
T ss_pred             CCCCCCCCCcCCHHHHHHHHCc
Confidence            4677788888888888777764

>PRK04860 hypothetical protein; Provisional

Probab=96.26  E-value=0.0019  Score=52.52  Aligned_cols=40  Identities=18%  Similarity=0.420  Sum_probs=30.6

Q ss_pred             CccccccchhccCChHHHHHHHHHhCCCCCcccCccccccCChH
Q psy11588        403 QKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMCPSAFKLKK  446 (459)
Q Consensus       403 ~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~~C~~~f~~~~  446 (459)
                      -+|.|. |+.   ....+..|.++|.++++|.|..|+..|....
T Consensus       118 ~~Y~C~-C~~---~~~~~rrH~ri~~g~~~YrC~~C~~~l~~~~  157 (160)
T PRK04860        118 FPYRCK-CQE---HQLTVRRHNRVVRGEAVYRCRRCGETLVFKG  157 (160)
T ss_pred             EEEEcC-CCC---eeCHHHHHHHHhcCCccEECCCCCceeEEec
Confidence            368887 876   6677788888888888888888888776543

>KOG2482|consensus

Probab=96.09  E-value=0.017  Score=51.49  Aligned_cols=65  Identities=23%  Similarity=0.372  Sum_probs=41.8

Q ss_pred             HHHHHHhhccC-CCCccccccccccCC-HHHHHHHHHHHcCC---------------------CCccccccccccccChH
Q psy11588        278 GFTSHLDIHSG-EKDHCCHICKKVFLR-YRNLVCHIKAVHEK---------------------VRDHQCSVCGKAFADIT  334 (459)
Q Consensus       278 ~l~~H~~~h~~-~~~~~C~~C~~~f~~-~~~l~~H~~~~h~~---------------------~~~~~C~~C~~~f~~~~  334 (459)
                      .|..+++...+ ....+|-.|+..+.- .+....|+-..|.-                     -..+.|-.|.+.|.++.
T Consensus       130 aLeqqQ~Eredt~fslqClFCn~e~lgnRs~~l~Hlf~~H~lniGlpDniVyvnelLehLkekL~r~~CLyCekifrdkn  209 (423)
T KOG2482|consen  130 ALEQQQKEREDTIFSLQCLFCNNEGLGNRSEILEHLFHVHGLNIGLPDNIVYVNELLEHLKEKLERLRCLYCEKIFRDKN  209 (423)
T ss_pred             HHHHHHHHhcCCeeeeEEEEecchhcccHHHHHHHHHHHhhhccCCCcceeeHHHHHHHHHHHHhhheeeeeccccCCcH
Confidence            44555544322 234679999877654 56677787666631                     12367888888888888


Q ss_pred             HHHHHHHH
Q psy11588        335 NMKVHMRI  342 (459)
Q Consensus       335 ~l~~H~~~  342 (459)
                      .|+.||+.
T Consensus       210 tLkeHMrk  217 (423)
T KOG2482|consen  210 TLKEHMRK  217 (423)
T ss_pred             HHHHHHHh
Confidence            88888765

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=96.02  E-value=0.0013  Score=35.80  Aligned_cols=23  Identities=26%  Similarity=0.553  Sum_probs=21.0

Q ss_pred             eeecccchhhccccccchhhhhc
Q psy11588          3 WTCCKCIAKYTSRSHLSLHLLSH   25 (459)
Q Consensus         3 ~~C~~C~~~f~~~~~l~~H~~~h   25 (459)
                      |.|..|++.|.+...|..|+++.
T Consensus         2 ~~C~~C~k~f~~~~~~~~H~~sk   24 (27)
T PF12171_consen    2 FYCDACDKYFSSENQLKQHMKSK   24 (27)
T ss_dssp             CBBTTTTBBBSSHHHHHCCTTSH
T ss_pred             CCcccCCCCcCCHHHHHHHHccC
Confidence            78999999999999999998753

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=95.92  E-value=0.013  Score=52.11  Aligned_cols=129  Identities=25%  Similarity=0.382  Sum_probs=72.4

Q ss_pred             ccccc--cccccCCHHHHHHHHHHHcCCCCccccccccc---ccc------ChHHHHHHHHHcCCCCC----cccccccc
Q psy11588        292 HCCHI--CKKVFLRYRNLVCHIKAVHEKVRDHQCSVCGK---AFA------DITNMKVHMRIHTGEKK----YVCETCGA  356 (459)
Q Consensus       292 ~~C~~--C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C~~---~f~------~~~~l~~H~~~h~~~~~----~~C~~C~~  356 (459)
                      |.|+.  |..+......|..|.+..|.   .+.|.+|-.   .|.      +...|..|...-..+.-    -.|..|..
T Consensus       152 F~CP~skc~~~C~~~k~lk~H~K~~H~---~~~C~~C~~nKk~F~~E~~lF~~~~Lr~H~~~G~~e~GFKGHP~C~FC~~  228 (493)
T COG5236         152 FKCPKSKCHRRCGSLKELKKHYKAQHG---FVLCSECIGNKKDFWNEIRLFRSSTLRDHKNGGLEEEGFKGHPLCIFCKI  228 (493)
T ss_pred             hcCCchhhhhhhhhHHHHHHHHHhhcC---cEEhHhhhcCcccCccceeeeecccccccccCCccccCcCCCchhhhccc
Confidence            66765  66666667788888886664   356666632   232      23445555433222211    24777777


Q ss_pred             cccccchHHHHHhhhCCCCcccCCC----CCcCCChHHHHHHHHhhcCCCCcccccc--ch----hccCChHHHHHHHHH
Q psy11588        357 SFVQWGSLNQHNLVHTAVNVVCSYC----GNTYKNPKSLESHIRYAHTIRQKSICDV--CG----KEFKMKKRLKEHMAV  426 (459)
Q Consensus       357 ~f~~~~~l~~H~~~h~~~~~~C~~C----~~~f~~~~~l~~H~~~~H~~~~~~~C~~--C~----~~f~~~~~l~~H~~~  426 (459)
                      .|.+-..|..|.+..+..-+.|+.=    ...|.+..+|..|.+..|     |.|.+  |-    ..|.....|..|+..
T Consensus       229 ~FYdDDEL~~HcR~~HE~ChICD~v~p~~~QYFK~Y~~Le~HF~~~h-----y~ct~qtc~~~k~~vf~~~~el~~h~~~  303 (493)
T COG5236         229 YFYDDDELRRHCRLRHEACHICDMVGPIRYQYFKSYEDLEAHFRNAH-----YCCTFQTCRVGKCYVFPYHTELLEHLTR  303 (493)
T ss_pred             eecChHHHHHHHHhhhhhhhhhhccCccchhhhhCHHHHHHHhhcCc-----eEEEEEEEecCcEEEeccHHHHHHHHHH
Confidence            7777777777776655433333221    234666777777776433     43432  21    356677777777654


Q ss_pred             hC
Q psy11588        427 HT  428 (459)
Q Consensus       427 H~  428 (459)
                      -+
T Consensus       304 ~h  305 (493)
T COG5236         304 FH  305 (493)
T ss_pred             Hh
Confidence            43

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=95.52  E-value=0.0063  Score=33.06  Aligned_cols=22  Identities=32%  Similarity=0.596  Sum_probs=20.2

Q ss_pred             cccccchhhccChhHHHHhhhh
Q psy11588        182 HSCQKCEESFDNCNNLWSHMFI  203 (459)
Q Consensus       182 ~~C~~C~~~f~~~~~l~~H~~~  203 (459)
                      |.|..|++.|.+...|..|++.
T Consensus         2 ~~C~~C~k~f~~~~~~~~H~~s   23 (27)
T PF12171_consen    2 FYCDACDKYFSSENQLKQHMKS   23 (27)
T ss_dssp             CBBTTTTBBBSSHHHHHCCTTS
T ss_pred             CCcccCCCCcCCHHHHHHHHcc
Confidence            7899999999999999999865

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>KOG2482|consensus

Probab=95.29  E-value=0.017  Score=51.42  Aligned_cols=109  Identities=17%  Similarity=0.236  Sum_probs=62.2

Q ss_pred             ccccccChhcccCHHHHHHHHhh--ccCCCC--------cccc--ccccccCC-HHHHHHHHHHHc------------CC
Q psy11588        263 NYKCPDCSAILLSYGGFTSHLDI--HSGEKD--------HCCH--ICKKVFLR-YRNLVCHIKAVH------------EK  317 (459)
Q Consensus       263 ~~~C~~C~~~f~~~~~l~~H~~~--h~~~~~--------~~C~--~C~~~f~~-~~~l~~H~~~~h------------~~  317 (459)
                      .+.|-.|.+.|..+..|+.||+.  |....|        |.=.  .=+++... .+.+.+-....+            .+
T Consensus       195 r~~CLyCekifrdkntLkeHMrkK~HrrinPknreYDkfyiINY~ev~ks~t~~~~e~dret~~d~~E~D~~wsDw~ed~  274 (423)
T KOG2482|consen  195 RLRCLYCEKIFRDKNTLKEHMRKKRHRRINPKNREYDKFYIINYLEVGKSWTIVHSEDDRETNEDINETDDTWSDWNEDD  274 (423)
T ss_pred             hheeeeeccccCCcHHHHHHHHhccCcccCCCccccceEEEEeHhhcCCccchhhhhhhhhhhccccccccchhhhhcCC
Confidence            57999999999999999999974  322222        0000  00111100 011100000000            01


Q ss_pred             CC--ccccccccccccChHHHHHHHHHcCC---------------------------CCCcccccccccccccchHHHHH
Q psy11588        318 VR--DHQCSVCGKAFADITNMKVHMRIHTG---------------------------EKKYVCETCGASFVQWGSLNQHN  368 (459)
Q Consensus       318 ~~--~~~C~~C~~~f~~~~~l~~H~~~h~~---------------------------~~~~~C~~C~~~f~~~~~l~~H~  368 (459)
                      ..  ...|-.|.....+...|..||.+-+.                           ...-.|-.|...|.....|..|+
T Consensus       275 a~a~~v~CLfC~~~~en~~~l~eHmk~vHe~Dl~Ki~sd~~Ln~YqrvrviNyiRkq~~~~~c~~cd~~F~~e~~l~~hm  354 (423)
T KOG2482|consen  275 AEALSVVCLFCTNFYENPVFLFEHMKIVHEFDLLKIQSDYSLNFYQRVRVINYIRKQKKKSRCAECDLSFWKEPGLLIHM  354 (423)
T ss_pred             CCccceEEEeeccchhhHHHHHHHHHHHHHhhHHhhccccccchhhhhhHHHHHHHHhhccccccccccccCcchhhhhc
Confidence            11  15777787777777778888765432                           01235788888999999999998


Q ss_pred             hhh
Q psy11588        369 LVH  371 (459)
Q Consensus       369 ~~h  371 (459)
                      ..+
T Consensus       355 ~e~  357 (423)
T KOG2482|consen  355 VED  357 (423)
T ss_pred             ccc
Confidence            754

>PRK04860 hypothetical protein; Provisional

Probab=94.38  E-value=0.022  Score=46.39  Aligned_cols=39  Identities=28%  Similarity=0.621  Sum_probs=27.3

Q ss_pred             CccccccccccccChHHHHHHHHHcCCCCCccccccccccccc
Q psy11588        319 RDHQCSVCGKAFADITNMKVHMRIHTGEKKYVCETCGASFVQW  361 (459)
Q Consensus       319 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~  361 (459)
                      -+|.|. |+.   ....+..|.++|.++++|.|..|+..|...
T Consensus       118 ~~Y~C~-C~~---~~~~~rrH~ri~~g~~~YrC~~C~~~l~~~  156 (160)
T PRK04860        118 FPYRCK-CQE---HQLTVRRHNRVVRGEAVYRCRRCGETLVFK  156 (160)
T ss_pred             EEEEcC-CCC---eeCHHHHHHHHhcCCccEECCCCCceeEEe
Confidence            357776 776   556677777777777777777777766543

>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type

Probab=94.29  E-value=0.036  Score=29.38  Aligned_cols=18  Identities=39%  Similarity=0.983  Sum_probs=8.2

Q ss_pred             ccccchhccCChHHHHHHH
Q psy11588        406 ICDVCGKEFKMKKRLKEHM  424 (459)
Q Consensus       406 ~C~~C~~~f~~~~~l~~H~  424 (459)
                      .|+.||+.| ....|..|+
T Consensus         4 ~C~~CgR~F-~~~~l~~H~   21 (25)
T PF13913_consen    4 PCPICGRKF-NPDRLEKHE   21 (25)
T ss_pred             cCCCCCCEE-CHHHHHHHH
Confidence            344444444 344444443

>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type

Probab=94.03  E-value=0.047  Score=28.94  Aligned_cols=21  Identities=29%  Similarity=0.670  Sum_probs=18.6

Q ss_pred             cccCccccccCChHHHHHHHHH
Q psy11588        433 FVCDMCPSAFKLKKHLQQHYKV  454 (459)
Q Consensus       433 ~~C~~C~~~f~~~~~l~~H~~~  454 (459)
                      .+|+.||+.| ....|.+|+++
T Consensus         3 ~~C~~CgR~F-~~~~l~~H~~~   23 (25)
T PF13913_consen    3 VPCPICGRKF-NPDRLEKHEKI   23 (25)
T ss_pred             CcCCCCCCEE-CHHHHHHHHHh
Confidence            5799999999 88899999875

>KOG2785|consensus

Probab=93.73  E-value=0.14  Score=46.82  Aligned_cols=51  Identities=22%  Similarity=0.361  Sum_probs=43.4

Q ss_pred             CccccccchhccCChHHHHHHHHHhCCC-----------------------CCcccCccc---cccCChHHHHHHHH
Q psy11588        403 QKSICDVCGKEFKMKKRLKEHMAVHTTD-----------------------RPFVCDMCP---SAFKLKKHLQQHYK  453 (459)
Q Consensus       403 ~~~~C~~C~~~f~~~~~l~~H~~~H~~~-----------------------~~~~C~~C~---~~f~~~~~l~~H~~  453 (459)
                      .|-.|-.|++.+.+...-..||..+||-                       .-|.|-.|+   +.|.+....++||.
T Consensus       165 ~Pt~CLfC~~~~k~~e~~~~HM~~~HgffIPdreYL~D~~GLl~YLgeKV~~~~~CL~CN~~~~~f~sleavr~HM~  241 (390)
T KOG2785|consen  165 IPTDCLFCDKKSKSLEENLKHMFKEHGFFIPDREYLTDEKGLLKYLGEKVGIGFICLFCNELGRPFSSLEAVRAHMR  241 (390)
T ss_pred             CCcceeecCCCcccHHHHHHHHhhccCCcCCchHhhhchhHHHHHHHHHhccCceEEEeccccCcccccHHHHHHHh
Confidence            3577999999999999999999888762                       237899999   99999999999986

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=93.01  E-value=0.1  Score=46.78  Aligned_cols=132  Identities=23%  Similarity=0.428  Sum_probs=87.5

Q ss_pred             cccccc--ChhcccCHHHHHHHHhhccCCCCcccccccc---cc------CCHHHHHHHHHHHcCCCCc----ccccccc
Q psy11588        263 NYKCPD--CSAILLSYGGFTSHLDIHSGEKDHCCHICKK---VF------LRYRNLVCHIKAVHEKVRD----HQCSVCG  327 (459)
Q Consensus       263 ~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~---~f------~~~~~l~~H~~~~h~~~~~----~~C~~C~  327 (459)
                      .|.||.  |......+..|..|.+..++.  +.|.+|-.   .|      .+...|..|.. .-..+..    -.|..|.
T Consensus       151 ~F~CP~skc~~~C~~~k~lk~H~K~~H~~--~~C~~C~~nKk~F~~E~~lF~~~~Lr~H~~-~G~~e~GFKGHP~C~FC~  227 (493)
T COG5236         151 SFKCPKSKCHRRCGSLKELKKHYKAQHGF--VLCSECIGNKKDFWNEIRLFRSSTLRDHKN-GGLEEEGFKGHPLCIFCK  227 (493)
T ss_pred             HhcCCchhhhhhhhhHHHHHHHHHhhcCc--EEhHhhhcCcccCccceeeeeccccccccc-CCccccCcCCCchhhhcc
Confidence            578864  777777788999999876653  67777742   23      34556777753 2222212    3699999


Q ss_pred             ccccChHHHHHHHHHcCCCCCcccccc----cccccccchHHHHHhhhCCCCcccCC--C--C--CcCCChHHHHHHHHh
Q psy11588        328 KAFADITNMKVHMRIHTGEKKYVCETC----GASFVQWGSLNQHNLVHTAVNVVCSY--C--G--NTYKNPKSLESHIRY  397 (459)
Q Consensus       328 ~~f~~~~~l~~H~~~h~~~~~~~C~~C----~~~f~~~~~l~~H~~~h~~~~~~C~~--C--~--~~f~~~~~l~~H~~~  397 (459)
                      ..|-+-..|..|++..+ ++-|.|+.-    ...|.+..+|..|.+.-+   |.|..  |  +  ..|.....|+.|+..
T Consensus       228 ~~FYdDDEL~~HcR~~H-E~ChICD~v~p~~~QYFK~Y~~Le~HF~~~h---y~ct~qtc~~~k~~vf~~~~el~~h~~~  303 (493)
T COG5236         228 IYFYDDDELRRHCRLRH-EACHICDMVGPIRYQYFKSYEDLEAHFRNAH---YCCTFQTCRVGKCYVFPYHTELLEHLTR  303 (493)
T ss_pred             ceecChHHHHHHHHhhh-hhhhhhhccCccchhhhhCHHHHHHHhhcCc---eEEEEEEEecCcEEEeccHHHHHHHHHH
Confidence            99999999999998755 233333322    245778888888876433   44422  2  1  468889999999987


Q ss_pred             hcCC
Q psy11588        398 AHTI  401 (459)
Q Consensus       398 ~H~~  401 (459)
                      .|..
T Consensus       304 ~h~~  307 (493)
T COG5236         304 FHKV  307 (493)
T ss_pred             Hhhc
Confidence            7753

>smart00451 ZnF_U1 U1-like zinc finger

Probab=92.65  E-value=0.081  Score=30.66  Aligned_cols=22  Identities=27%  Similarity=0.664  Sum_probs=16.7

Q ss_pred             CcccCccccccCChHHHHHHHH
Q psy11588        432 PFVCDMCPSAFKLKKHLQQHYK  453 (459)
Q Consensus       432 ~~~C~~C~~~f~~~~~l~~H~~  453 (459)
                      +|.|++|++.|.+...+..|++
T Consensus         3 ~~~C~~C~~~~~~~~~~~~H~~   24 (35)
T smart00451        3 GFYCKLCNVTFTDEISVEAHLK   24 (35)
T ss_pred             CeEccccCCccCCHHHHHHHHC
Confidence            5778888888887777777764

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>KOG2785|consensus

Probab=92.51  E-value=0.49  Score=43.45  Aligned_cols=52  Identities=21%  Similarity=0.386  Sum_probs=42.8

Q ss_pred             CcccCCCCCcCCChHHHHHHHHhhcCCCC----------------------ccccccch---hccCChHHHHHHHHH
Q psy11588        375 NVVCSYCGNTYKNPKSLESHIRYAHTIRQ----------------------KSICDVCG---KEFKMKKRLKEHMAV  426 (459)
Q Consensus       375 ~~~C~~C~~~f~~~~~l~~H~~~~H~~~~----------------------~~~C~~C~---~~f~~~~~l~~H~~~  426 (459)
                      |-.|-.|+..+.+...-..||...|+---                      -+.|-.|+   +.|.+..+.+.||..
T Consensus       166 Pt~CLfC~~~~k~~e~~~~HM~~~HgffIPdreYL~D~~GLl~YLgeKV~~~~~CL~CN~~~~~f~sleavr~HM~~  242 (390)
T KOG2785|consen  166 PTDCLFCDKKSKSLEENLKHMFKEHGFFIPDREYLTDEKGLLKYLGEKVGIGFICLFCNELGRPFSSLEAVRAHMRD  242 (390)
T ss_pred             CcceeecCCCcccHHHHHHHHhhccCCcCCchHhhhchhHHHHHHHHHhccCceEEEeccccCcccccHHHHHHHhh
Confidence            35688899999999999999987775322                      37899999   999999999999974

>KOG2893|consensus

Probab=92.08  E-value=0.051  Score=45.83  Aligned_cols=41  Identities=27%  Similarity=0.583  Sum_probs=30.8

Q ss_pred             cCCCCCcCCChHHHHHHHHhhcCCCCccccccchhccCChHHHHHH
Q psy11588        378 CSYCGNTYKNPKSLESHIRYAHTIRQKSICDVCGKEFKMKKRLKEH  423 (459)
Q Consensus       378 C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~C~~~f~~~~~l~~H  423 (459)
                      |.+|++.|.+...|..|++.     +-|+|.+|-|..-+-..|..|
T Consensus        13 cwycnrefddekiliqhqka-----khfkchichkkl~sgpglsih   53 (341)
T KOG2893|consen   13 CWYCNREFDDEKILIQHQKA-----KHFKCHICHKKLFSGPGLSIH   53 (341)
T ss_pred             eeecccccchhhhhhhhhhh-----ccceeeeehhhhccCCCceee
Confidence            77888888888888877763     447888887777777777766

>smart00451 ZnF_U1 U1-like zinc finger

Probab=91.96  E-value=0.1  Score=30.22  Aligned_cols=22  Identities=18%  Similarity=0.511  Sum_probs=17.6

Q ss_pred             ccccccchhccCChHHHHHHHH
Q psy11588        404 KSICDVCGKEFKMKKRLKEHMA  425 (459)
Q Consensus       404 ~~~C~~C~~~f~~~~~l~~H~~  425 (459)
                      +|.|++|++.|.+..++..|++
T Consensus         3 ~~~C~~C~~~~~~~~~~~~H~~   24 (35)
T smart00451        3 GFYCKLCNVTFTDEISVEAHLK   24 (35)
T ss_pred             CeEccccCCccCCHHHHHHHHC
Confidence            5778888888888888888875

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>KOG4173|consensus

Probab=90.93  E-value=0.13  Score=42.44  Aligned_cols=74  Identities=26%  Similarity=0.542  Sum_probs=32.8

Q ss_pred             ccccc--ccccccccchHHHHHhhhCCCCcccCCCCCcCCChHHHHHHHHhhcC---------CCCcccccc--chhccC
Q psy11588        349 YVCET--CGASFVQWGSLNQHNLVHTAVNVVCSYCGNTYKNPKSLESHIRYAHT---------IRQKSICDV--CGKEFK  415 (459)
Q Consensus       349 ~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~C~~C~~~f~~~~~l~~H~~~~H~---------~~~~~~C~~--C~~~f~  415 (459)
                      |.|++  |...|.+...+..|-..-++  -.|..|.+.|.+...|..|+...|.         |...|+|-+  |+..|.
T Consensus        80 ~~cqvagc~~~~d~lD~~E~hY~~~h~--~sCs~C~r~~Pt~hLLd~HI~E~HDs~Fqa~veRG~dMy~ClvEgCt~KFk  157 (253)
T KOG4173|consen   80 FACQVAGCCQVFDALDDYEHHYHTLHG--NSCSFCKRAFPTGHLLDAHILEWHDSLFQALVERGQDMYQCLVEGCTEKFK  157 (253)
T ss_pred             ccccccchHHHHhhhhhHHHhhhhccc--chhHHHHHhCCchhhhhHHHHHHHHHHHHHHHHcCccHHHHHHHhhhhhhh
Confidence            44544  44444444444444322211  2355555555555555555543331         233344432  555555


Q ss_pred             ChHHHHHHH
Q psy11588        416 MKKRLKEHM  424 (459)
Q Consensus       416 ~~~~l~~H~  424 (459)
                      +..+-..|+
T Consensus       158 T~r~RkdH~  166 (253)
T KOG4173|consen  158 TSRDRKDHM  166 (253)
T ss_pred             hhhhhhhHH
Confidence            555444444

>TIGR00622 ssl1 transcription factor ssl1

Probab=90.01  E-value=0.39  Score=36.13  Aligned_cols=77  Identities=19%  Similarity=0.373  Sum_probs=38.6

Q ss_pred             CCCcccccccccccccchHHHHHhhhCCC---C------------cccCCCCCcCCChHHHHHHHHhhcCCCCccccccc
Q psy11588        346 EKKYVCETCGASFVQWGSLNQHNLVHTAV---N------------VVCSYCGNTYKNPKSLESHIRYAHTIRQKSICDVC  410 (459)
Q Consensus       346 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~---~------------~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~C  410 (459)
                      +-|..|++||-+..+...|.+--  |+--   +            -.|--|...|.......   ...-.....|+|+.|
T Consensus        13 ~LP~~CpiCgLtLVss~HLARSy--HHLfPl~~f~ev~~~~~~~~~~C~~C~~~f~~~~~~~---~~~~~~~~~y~C~~C   87 (112)
T TIGR00622        13 ELPVECPICGLTLILSTHLARSY--HHLFPLKAFQEIPLEEYNGSRFCFGCQGPFPKPPVSP---FDELKDSHRYVCAVC   87 (112)
T ss_pred             CCCCcCCcCCCEEeccchHHHhh--hccCCCcccccccccccCCCCcccCcCCCCCCccccc---ccccccccceeCCCC
Confidence            35777888887777776666531  2110   1            12666666665432100   000111234666666


Q ss_pred             hhccCChHHHHHHHHHh
Q psy11588        411 GKEFKMKKRLKEHMAVH  427 (459)
Q Consensus       411 ~~~f~~~~~l~~H~~~H  427 (459)
                      ...|-..=++..|...|
T Consensus        88 ~~~FC~dCD~fiHe~Lh  104 (112)
T TIGR00622        88 KNVFCVDCDVFVHESLH  104 (112)
T ss_pred             CCccccccchhhhhhcc
Confidence            66666555555555544

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center

Probab=89.97  E-value=0.16  Score=29.04  Aligned_cols=9  Identities=44%  Similarity=1.342  Sum_probs=4.6

Q ss_pred             CCcccCccc
Q psy11588        431 RPFVCDMCP  439 (459)
Q Consensus       431 ~~~~C~~C~  439 (459)
                      .++.|++|+
T Consensus        16 ~~~~CP~Cg   24 (33)
T cd00350          16 APWVCPVCG   24 (33)
T ss_pred             CCCcCcCCC
Confidence            444555554

The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.

>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]

Probab=89.29  E-value=0.32  Score=30.74  Aligned_cols=29  Identities=21%  Similarity=0.410  Sum_probs=24.3

Q ss_pred             cCCccccchhhHhhhhHHHHHHHHhhhcc
Q psy11588         53 TKDVYHCADCEQVFLDKFVLELHLKIEHK   81 (459)
Q Consensus        53 ~~~~~~C~~C~~~f~~~~~L~~H~~~h~~   81 (459)
                      ++..++|+-|++.|....++.+|...-|+
T Consensus        14 GE~~lrCPRC~~~FR~~K~Y~RHVNKaH~   42 (65)
T COG4049          14 GEEFLRCPRCGMVFRRRKDYIRHVNKAHG   42 (65)
T ss_pred             CceeeeCCchhHHHHHhHHHHHHhhHHhh
Confidence            55678999999999999999999876543

>COG5048 FOG: Zn-finger [General function prediction only]

Probab=88.93  E-value=0.18  Score=49.33  Aligned_cols=156  Identities=19%  Similarity=0.206  Sum_probs=94.3

Q ss_pred             CccccchhhHhhhhHHHHHHHHh--hhccCCCCCCCceeecc--cCCcceeeehhHHhhhhhhccccccccccccccc--
Q psy11588         55 DVYHCADCEQVFLDKFVLELHLK--IEHKDNMFPKSHWFVCK--MCGHRLFMRLSDLRRHMQDYHCEFHFDVESCAVS--  128 (459)
Q Consensus        55 ~~~~C~~C~~~f~~~~~L~~H~~--~h~~~~~~~~~~~~~C~--~C~~~~f~~~~~l~~H~~~h~~~~~~~~~~c~~~--  128 (459)
                      .++.|..|...|.....|..|.+  .|..+.    ..++.|+  .|++. |.....+..|...|.+..+..+..-...  
T Consensus       288 ~~~~~~~~~~~~s~~~~l~~~~~~~~h~~~~----~~~~~~p~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  362 (467)
T COG5048         288 LPIKSKQCNISFSRSSPLTRHLRSVNHSGES----LKPFSCPYSLCGKL-FSRNDALKRHILLHTSISPAKEKLLNSSSK  362 (467)
T ss_pred             cCCCCccccCCcccccccccccccccccccc----CCceeeeccCCCcc-ccccccccCCcccccCCCccccccccCccc
Confidence            46899999999999999999999  787771    1278999  89999 9999999999999987655443322111  


Q ss_pred             ccccee-----ecCccchhhhhhhhhhhhhccccCCCCCCCCCCccccccccCCCCCCcccccchhhccChhHHHHhhhh
Q psy11588        129 RLQDIT-----FPCEECKELCVLSKYCIKHQDCSKAMSTPAPSSESVCIKHSNLIPKCHSCQKCEESFDNCNNLWSHMFI  203 (459)
Q Consensus       129 ~~~~~~-----~~C~~C~~~f~~~~~l~~H~~c~~~~~~~~~l~~~~~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~  203 (459)
                      +.....     ..-..-+.. ...........+...+.....+.. +...+....+..+.+..|.+.|.....+..|++.
T Consensus       363 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  440 (467)
T COG5048         363 FSPLLNNEPPQSLQQYKDLK-NDKKSETLSNSCIRNFKRDSNLSL-HIITHLSFRPYNCKNPPCSKSFNRHYNLIPHKKI  440 (467)
T ss_pred             cccccCCCCccchhhccCcc-CCccccccccchhhhhcccccccc-ccccccccCCcCCCCCcchhhccCcccccccccc
Confidence            100000     000000000 000000000022223333333333 3344444444447788899999999999999988


Q ss_pred             hcCCCccccCCCCC
Q psy11588        204 KHENSDFVCNLCPS  217 (459)
Q Consensus       204 ~~~~~~~~C~~C~~  217 (459)
                      +....++.|..+..
T Consensus       441 ~~~~~~~~~~~~~~  454 (467)
T COG5048         441 HTNHAPLLCSILKS  454 (467)
T ss_pred             cccCCceeeccccc
Confidence            88777766665544

>PF00301 Rubredoxin: Rubredoxin; InterPro: IPR004039 Rubredoxin is a low molecular weight iron-containing bacterial protein involved in electron transfer [, ], sometimes replacing ferredoxin as an electron carrier []

Probab=88.76  E-value=0.39  Score=29.96  Aligned_cols=43  Identities=14%  Similarity=0.380  Sum_probs=21.4

Q ss_pred             ceeecccchhhccccccchhhhhccccccccccccccchhccc
Q psy11588          2 VWTCCKCIAKYTSRSHLSLHLLSHSSDADEIKQELSCEQCGCS   44 (459)
Q Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~~~~C~~C~~~   44 (459)
                      .|.|.+|+.++.-...-...-..-....++....|.|++|+..
T Consensus         1 ky~C~~CgyvYd~~~Gd~~~~i~pGt~F~~Lp~~w~CP~C~a~   43 (47)
T PF00301_consen    1 KYQCPVCGYVYDPEKGDPENGIPPGTPFEDLPDDWVCPVCGAP   43 (47)
T ss_dssp             EEEETTTSBEEETTTBBGGGTB-TT--GGGS-TT-B-TTTSSB
T ss_pred             CcCCCCCCEEEcCCcCCcccCcCCCCCHHHCCCCCcCcCCCCc
Confidence            3789999988887666544322221112222334666666653

The 3-D structures of a number of rubredoxins have been solved [, ]. The fold belongs to the alpha+beta class, with 2 alpha-helices and 2-3 beta-strands. Its active site contains an iron ion which is co-ordinated by the sulphurs of four conserved cysteine residues forming an almost regular tetrahedron. The conserved cysteines reside on two loops, which are the most conserved regions of the protein. In addition, a ring of acidic residues in the proximity of the [Fe(Cys)4] centre is also well-conserved []. ; GO: 0009055 electron carrier activity, 0046872 metal ion binding; PDB: 2RDV_C 1RDV_A 1S24_A 1T9O_B 1B2J_A 1SMW_A 2PVE_B 1BFY_A 1T9P_C 1C09_C ....

>KOG4173|consensus

Probab=88.45  E-value=0.39  Score=39.77  Aligned_cols=78  Identities=24%  Similarity=0.459  Sum_probs=58.3

Q ss_pred             ccccccc--ChhcccCHHHHHHHHhhccCCCCccccccccccCCHHHHHHHHHHHcC---------CCCccccc--cccc
Q psy11588        262 VNYKCPD--CSAILLSYGGFTSHLDIHSGEKDHCCHICKKVFLRYRNLVCHIKAVHE---------KVRDHQCS--VCGK  328 (459)
Q Consensus       262 ~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~---------~~~~~~C~--~C~~  328 (459)
                      ..+.|++  |...|.+...+..|..+-++.   .|..|.+.|.+..-|..|+.+.|.         +...|.|-  .|+.
T Consensus        78 ~~~~cqvagc~~~~d~lD~~E~hY~~~h~~---sCs~C~r~~Pt~hLLd~HI~E~HDs~Fqa~veRG~dMy~ClvEgCt~  154 (253)
T KOG4173|consen   78 PAFACQVAGCCQVFDALDDYEHHYHTLHGN---SCSFCKRAFPTGHLLDAHILEWHDSLFQALVERGQDMYQCLVEGCTE  154 (253)
T ss_pred             ccccccccchHHHHhhhhhHHHhhhhcccc---hhHHHHHhCCchhhhhHHHHHHHHHHHHHHHHcCccHHHHHHHhhhh
Confidence            3467765  788888888888888765553   699999999999999999987773         34457773  4777


Q ss_pred             cccChHHHHHHHHH
Q psy11588        329 AFADITNMKVHMRI  342 (459)
Q Consensus       329 ~f~~~~~l~~H~~~  342 (459)
                      .|.+...-..|+-.
T Consensus       155 KFkT~r~RkdH~I~  168 (253)
T KOG4173|consen  155 KFKTSRDRKDHMIR  168 (253)
T ss_pred             hhhhhhhhhhHHHH
Confidence            77777777777543

>KOG2893|consensus

Probab=88.41  E-value=0.13  Score=43.48  Aligned_cols=48  Identities=29%  Similarity=0.552  Sum_probs=40.0

Q ss_pred             CccccccchhccCChHHHHHHHHHhCCCCCcccCccccccCChHHHHHHH-HHh
Q psy11588        403 QKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMCPSAFKLKKHLQQHY-KVH  455 (459)
Q Consensus       403 ~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~~C~~~f~~~~~l~~H~-~~H  455 (459)
                      ++| |.+|++.|....-|.+|++.    +-|+|.+|.+...+--.|..|- .+|
T Consensus        10 kpw-cwycnrefddekiliqhqka----khfkchichkkl~sgpglsihcmqvh   58 (341)
T KOG2893|consen   10 KPW-CWYCNREFDDEKILIQHQKA----KHFKCHICHKKLFSGPGLSIHCMQVH   58 (341)
T ss_pred             Cce-eeecccccchhhhhhhhhhh----ccceeeeehhhhccCCCceeehhhhh
Confidence            443 99999999999999999875    4599999999998888888884 444

>COG5048 FOG: Zn-finger [General function prediction only]

Probab=88.34  E-value=0.079  Score=51.94  Aligned_cols=150  Identities=22%  Similarity=0.349  Sum_probs=98.6

Q ss_pred             CCccccccccccCCHHHHHHHHHH-HcCCC--Cccccc--cccccccChHHHHHHHHHcCCCCCccccc--ccccccccc
Q psy11588        290 KDHCCHICKKVFLRYRNLVCHIKA-VHEKV--RDHQCS--VCGKAFADITNMKVHMRIHTGEKKYVCET--CGASFVQWG  362 (459)
Q Consensus       290 ~~~~C~~C~~~f~~~~~l~~H~~~-~h~~~--~~~~C~--~C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~~~~  362 (459)
                      .++.|..|...|.....|..|.+. .|.++  .++.|+  .|++.|.....+..|...|.+..++.+..  +...+....
T Consensus       288 ~~~~~~~~~~~~s~~~~l~~~~~~~~h~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  367 (467)
T COG5048         288 LPIKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLHTSISPAKEKLLNSSSKFSPLL  367 (467)
T ss_pred             cCCCCccccCCccccccccccccccccccccCCceeeeccCCCccccccccccCCcccccCCCccccccccCcccccccc
Confidence            357788888888888888888774 67777  788888  68888888888888888887777766644  333333222


Q ss_pred             hH------HHHHhhhCCCCccc--CCCCCcCCChHHHHHHHHhhcCCCC--ccccccchhccCChHHHHHHHHHhCCCCC
Q psy11588        363 SL------NQHNLVHTAVNVVC--SYCGNTYKNPKSLESHIRYAHTIRQ--KSICDVCGKEFKMKKRLKEHMAVHTTDRP  432 (459)
Q Consensus       363 ~l------~~H~~~h~~~~~~C--~~C~~~f~~~~~l~~H~~~~H~~~~--~~~C~~C~~~f~~~~~l~~H~~~H~~~~~  432 (459)
                      .-      .............+  ..|...+.....+..|.. .|....  .+.+..|.+.|.....+..|++.|....+
T Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  446 (467)
T COG5048         368 NNEPPQSLQQYKDLKNDKKSETLSNSCIRNFKRDSNLSLHII-THLSFRPYNCKNPPCSKSFNRHYNLIPHKKIHTNHAP  446 (467)
T ss_pred             CCCCccchhhccCccCCccccccccchhhhhccccccccccc-cccccCCcCCCCCcchhhccCcccccccccccccCCc
Confidence            21      11111112222333  235556666666666665 554444  46778899999999999999998888777


Q ss_pred             cccCcccc
Q psy11588        433 FVCDMCPS  440 (459)
Q Consensus       433 ~~C~~C~~  440 (459)
                      +.|..+..
T Consensus       447 ~~~~~~~~  454 (467)
T COG5048         447 LLCSILKS  454 (467)
T ss_pred             eeeccccc
Confidence            76665543

>PF12013 DUF3505: Protein of unknown function (DUF3505); InterPro: IPR022698 This family of proteins is functionally uncharacterised

Probab=87.78  E-value=0.95  Score=34.46  Aligned_cols=25  Identities=20%  Similarity=0.515  Sum_probs=19.5

Q ss_pred             ccc----CccccccCChHHHHHHHHHhcC
Q psy11588        433 FVC----DMCPSAFKLKKHLQQHYKVHLK  457 (459)
Q Consensus       433 ~~C----~~C~~~f~~~~~l~~H~~~H~~  457 (459)
                      |.|    ..|++.+.+...|.+|++.++|
T Consensus        81 ~~C~~~~~~C~y~~~~~~~m~~H~~~~Hg  109 (109)
T PF12013_consen   81 YRCQCDPPHCGYITRSKKTMRKHWRKEHG  109 (109)
T ss_pred             eeeecCCCCCCcEeccHHHHHHHHHHhcC
Confidence            778    7888888888888888777664

This protein is found in eukaryotes. Proteins in this family are typically between 247 to 1018 amino acids in length. This region contains two segments that are likely to be C2H2 zinc binding domains.

>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria

Probab=86.49  E-value=0.29  Score=29.80  Aligned_cols=28  Identities=25%  Similarity=0.774  Sum_probs=12.7

Q ss_pred             cccchhccccccccccccCCccccchhh
Q psy11588         36 LSCEQCGCSLDFHSALYTKDVYHCADCE   63 (459)
Q Consensus        36 ~~C~~C~~~f~~~~~l~~~~~~~C~~C~   63 (459)
                      |.|..||..|.....+.....-.|+.|+
T Consensus         6 y~C~~Cg~~fe~~~~~~~~~~~~CP~Cg   33 (42)
T PF09723_consen    6 YRCEECGHEFEVLQSISEDDPVPCPECG   33 (42)
T ss_pred             EEeCCCCCEEEEEEEcCCCCCCcCCCCC
Confidence            4455555444444443333344444444

The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.

>PF12013 DUF3505: Protein of unknown function (DUF3505); InterPro: IPR022698 This family of proteins is functionally uncharacterised

Probab=86.48  E-value=1.2  Score=33.95  Aligned_cols=54  Identities=26%  Similarity=0.488  Sum_probs=43.6

Q ss_pred             CcccCCCCCcCCChHHHHHHHHhhcCCC-----------------------------------------Ccccc----cc
Q psy11588        375 NVVCSYCGNTYKNPKSLESHIRYAHTIR-----------------------------------------QKSIC----DV  409 (459)
Q Consensus       375 ~~~C~~C~~~f~~~~~l~~H~~~~H~~~-----------------------------------------~~~~C----~~  409 (459)
                      ...|..|+..... +++..|++..|...                                         .-|.|    +.
T Consensus        11 vlIC~~C~~av~~-~~v~~HL~~~H~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~p~~~~~Pi~gLp~~~G~~C~~~~~~   89 (109)
T PF12013_consen   11 VLICRQCQYAVQP-SEVESHLRKRHHILKSQERQRIVEAIRQWPDLLPDPDDLQIPPDPSPPIPGLPVYDGYRCQCDPPH   89 (109)
T ss_pred             EEEeCCCCcccCc-hHHHHHHHHhcccccHHHHHHHHHHHHhhhhcccCccccCCCCCCCCcCCCCCCCCCeeeecCCCC
Confidence            3579999988766 88999998665211                                         11889    99


Q ss_pred             chhccCChHHHHHHHHHhCC
Q psy11588        410 CGKEFKMKKRLKEHMAVHTT  429 (459)
Q Consensus       410 C~~~f~~~~~l~~H~~~H~~  429 (459)
                      |+..+.+...+..|++.++|
T Consensus        90 C~y~~~~~~~m~~H~~~~Hg  109 (109)
T PF12013_consen   90 CGYITRSKKTMRKHWRKEHG  109 (109)
T ss_pred             CCcEeccHHHHHHHHHHhcC
Confidence            99999999999999998775

This protein is found in eukaryotes. Proteins in this family are typically between 247 to 1018 amino acids in length. This region contains two segments that are likely to be C2H2 zinc binding domains.

>smart00834 CxxC_CXXC_SSSS Putative regulatory protein

Probab=84.76  E-value=0.39  Score=28.94  Aligned_cols=29  Identities=21%  Similarity=0.701  Sum_probs=12.3

Q ss_pred             cccchhccccccccccccCCccccchhhH
Q psy11588         36 LSCEQCGCSLDFHSALYTKDVYHCADCEQ   64 (459)
Q Consensus        36 ~~C~~C~~~f~~~~~l~~~~~~~C~~C~~   64 (459)
                      |.|..||..|...........-.|+.|+.
T Consensus         6 y~C~~Cg~~fe~~~~~~~~~~~~CP~Cg~   34 (41)
T smart00834        6 YRCEDCGHTFEVLQKISDDPLATCPECGG   34 (41)
T ss_pred             EEcCCCCCEEEEEEecCCCCCCCCCCCCC
Confidence            44555555444333332233344555543

CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.

>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates

Probab=83.52  E-value=0.54  Score=26.55  Aligned_cols=7  Identities=29%  Similarity=1.194  Sum_probs=3.0

Q ss_pred             cccchhh
Q psy11588         57 YHCADCE   63 (459)
Q Consensus        57 ~~C~~C~   63 (459)
                      .+|+.||
T Consensus        18 irC~~CG   24 (32)
T PF03604_consen   18 IRCPECG   24 (32)
T ss_dssp             SSBSSSS
T ss_pred             EECCcCC
Confidence            3444444

Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L ....

>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center

Probab=82.85  E-value=0.5  Score=29.92  Aligned_cols=15  Identities=20%  Similarity=0.452  Sum_probs=10.7

Q ss_pred             eeecccchhhccccc
Q psy11588          3 WTCCKCIAKYTSRSH   17 (459)
Q Consensus         3 ~~C~~C~~~f~~~~~   17 (459)
                      |.|.+||.++.-...
T Consensus         2 y~C~~CgyiYd~~~G   16 (50)
T cd00730           2 YECRICGYIYDPAEG   16 (50)
T ss_pred             cCCCCCCeEECCCCC
Confidence            678888888776443

Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.

>PHA00626 hypothetical protein

Probab=82.62  E-value=0.58  Score=29.80  Aligned_cols=13  Identities=38%  Similarity=0.628  Sum_probs=7.2

Q ss_pred             CccccchhhHhhh
Q psy11588         55 DVYHCADCEQVFL   67 (459)
Q Consensus        55 ~~~~C~~C~~~f~   67 (459)
                      ..|+|+.|+..|+
T Consensus        22 nrYkCkdCGY~ft   34 (59)
T PHA00626         22 DDYVCCDCGYNDS   34 (59)
T ss_pred             cceEcCCCCCeec
Confidence            4455666655554

>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues

Probab=81.55  E-value=1.1  Score=33.84  Aligned_cols=13  Identities=38%  Similarity=0.997  Sum_probs=5.6

Q ss_pred             CccccccchhccC
Q psy11588        403 QKSICDVCGKEFK  415 (459)
Q Consensus       403 ~~~~C~~C~~~f~  415 (459)
                      .|..|+.||..|.
T Consensus        25 ~PivCP~CG~~~~   37 (108)
T PF09538_consen   25 DPIVCPKCGTEFP   37 (108)
T ss_pred             CCccCCCCCCccC
Confidence            3444444444443

The function of members of this family is unknown.

>TIGR00622 ssl1 transcription factor ssl1

Probab=80.93  E-value=0.92  Score=34.16  Aligned_cols=22  Identities=32%  Similarity=0.516  Sum_probs=9.5

Q ss_pred             ccccchhhHhhhhHHHHHHHHh
Q psy11588         56 VYHCADCEQVFLDKFVLELHLK   77 (459)
Q Consensus        56 ~~~C~~C~~~f~~~~~L~~H~~   77 (459)
                      .|+|+.|...|=..-+.-.|..
T Consensus        81 ~y~C~~C~~~FC~dCD~fiHe~  102 (112)
T TIGR00622        81 RYVCAVCKNVFCVDCDVFVHES  102 (112)
T ss_pred             ceeCCCCCCccccccchhhhhh
Confidence            3444444444444444444433

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase

Probab=80.52  E-value=0.83  Score=26.27  Aligned_cols=10  Identities=40%  Similarity=0.906  Sum_probs=5.0

Q ss_pred             cccccchhcc
Q psy11588        405 SICDVCGKEF  414 (459)
Q Consensus       405 ~~C~~C~~~f  414 (459)
                      |.|.+||..+
T Consensus         3 ~~C~~CG~i~   12 (34)
T cd00729           3 WVCPVCGYIH   12 (34)
T ss_pred             EECCCCCCEe
Confidence            4455555443

In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.

>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain

Probab=80.14  E-value=0.46  Score=28.13  Aligned_cols=8  Identities=38%  Similarity=1.074  Sum_probs=3.2

Q ss_pred             cchhcccc
Q psy11588         38 CEQCGCSL   45 (459)
Q Consensus        38 C~~C~~~f   45 (459)
                      |+.|+..|
T Consensus         5 CP~C~~~~   12 (38)
T TIGR02098         5 CPNCKTSF   12 (38)
T ss_pred             CCCCCCEE
Confidence            34444433

This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	459
2i13_A	190	Aart, A Six Finger Zinc Finger Designed To Recogniz		2e-24
1mey_C	87	Crystal Structure Of A Designed Zinc Finger Protein		5e-11
1mey_C	87	Crystal Structure Of A Designed Zinc Finger Protein		1e-07
2kmk_A	82	Gfi-1 Zinc Fingers 3-5 Complexed With Dna Length =		2e-10
2kmk_A	82	Gfi-1 Zinc Fingers 3-5 Complexed With Dna Length =		3e-06
1ubd_C	124	Co-Crystal Structure Of Human Yy1 Zinc Finger Domai		4e-10
1tf6_A	190	Co-crystal Structure Of Xenopus Tfiiia Zinc Finger		3e-09
2dlq_A	124	Solution Structure Of The Tandem Four Zf-C2h2 Domai		1e-08
1g2d_C	90	Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX		5e-08
1g2d_C	90	Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX		2e-07
1g2d_C	90	Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX		3e-06
1g2f_C	90	Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX		6e-08
1g2f_C	90	Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX		1e-07
1g2f_C	90	Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX		2e-06
2dmd_A	96	Solution Structure Of The N-Terminal C2h2 Type Zinc		8e-08
2dmd_A	96	Solution Structure Of The N-Terminal C2h2 Type Zinc		4e-04
1a1i_A	90	Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac		8e-08
1a1i_A	90	Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac		5e-06
2cot_A	77	Solution Structure Of The First And Second Zf-C2h2		8e-08
2cot_A	77	Solution Structure Of The First And Second Zf-C2h2		4e-06
1jk1_A	90	Zif268 D20a Mutant Bound To Wt Dna Site Length = 90		1e-07
1jk1_A	90	Zif268 D20a Mutant Bound To Wt Dna Site Length = 90		6e-06
1p47_A	87	Crystal Structure Of Tandem Zif268 Molecules Comple		1e-07
1p47_A	87	Crystal Structure Of Tandem Zif268 Molecules Comple		5e-06
1aay_A	90	Zif268 Zinc Finger-Dna Complex Length = 90		1e-07
1aay_A	90	Zif268 Zinc Finger-Dna Complex Length = 90		6e-06
1a1f_A	90	Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc		2e-07
1a1f_A	90	Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc		2e-06
1zaa_C	87	Zinc Finger-Dna Recognition: Crystal Structure Of A		2e-07
1zaa_C	87	Zinc Finger-Dna Recognition: Crystal Structure Of A		6e-06
1a1h_A	90	Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac		2e-07
1a1h_A	90	Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac		1e-06
2jp9_A	119	Structure Of The Wilms Tumor Suppressor Protein Zin		4e-07
2jp9_A	119	Structure Of The Wilms Tumor Suppressor Protein Zin		7e-06
2yt9_A	95	Solution Structure Of C2h2 Type Zinc Finger Domain		4e-07
2yt9_A	95	Solution Structure Of C2h2 Type Zinc Finger Domain		1e-05
2gli_A	155	Five-Finger GliDNA COMPLEX Length = 155		1e-06
2ee8_A	106	Solution Structure Of Three Zf-C2h2 Domains From Mo		1e-06
2ee8_A	106	Solution Structure Of Three Zf-C2h2 Domains From Mo		3e-06
2wbu_A	90	Crystal Structure Of The Zinc Finger Domain Of Klf4		2e-06
2wbs_A	89	Crystal Structure Of The Zinc Finger Domain Of Klf4		2e-06
1x6e_A	72	Solution Structures Of The C2h2 Type Zinc Finger Do		3e-06
2lt7_A	133	Solution Nmr Structure Of Kaiso Zinc Finger Dna Bin		3e-05
2lce_A	74	Chemical Shift Assignment Of Hr4436b From Homo Sapi		3e-05
2lce_A	74	Chemical Shift Assignment Of Hr4436b From Homo Sapi		2e-04
2dlk_A	79	Solution Structure Of The First And The Second Zf-C		3e-05
2csh_A	110	Solution Structure Of Tandem Repeat Of The Zf-C2h2		3e-05
2rpc_A	155	Solution Structure Of The Tandem Zf-C2h2 Domains Fr		3e-05
3uk3_C	57	Crystal Structure Of Znf217 Bound To Dna Length = 5		9e-05
2ebt_A	100	Solution Structure Of Three Tandem Repeats Of Zf-C2		2e-04
1llm_C	88	Crystal Structure Of A Zif23-Gcn4 Chimera Bound To		2e-04

>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann Triplets Length = 190

Iteration: 1
 Score =  110 bits (274), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 60/175 (34%), Positives = 83/175 (47%), Gaps = 3/175 (1%)
Query: 285 IHSGEKDHCCHICKKVFLRYRNLVCHIKAVHEKVRDHQCSVCGKAFADITNMKVHMRIHT 344
           +  GEK + C  C K F R  +L  H +  H   + ++C  CGK+F+D  ++  H R HT
Sbjct: 15  LEPGEKPYACPECGKSFSRSDHLAEHQR-THTGEKPYKCPECGKSFSDKKDLTRHQRTHT 73
Query: 345 GEKKYVCETCGASFVQWGSLNQHNLVHTAVNV-VCSYCGNTYKNPKSLESHIRYAHTIRQ 403
           GEK Y C  CG SF Q  +L  H   HT      C  CG ++     L +H R  HT  +
Sbjct: 74  GEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQR-THTGEK 132
Query: 404 KSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVHLKK 458
              C  CGK F  +  L  H   HT ++P+ C  C  +F  +  L  H + H  K
Sbjct: 133 PYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTGK 187

>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound To Dna Length = 87

Iteration: 1
 Score = 65.9 bits (159), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 319 RDHQCSVCGKAFADITNMKVHMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHTAVNVV- 377
           + ++C  CGK+F+  +N++ H R HTGEK Y C  CG SF Q   L +H   HT      
Sbjct: 3   KPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYK 62
Query: 378 CSYCGNTYKNPKSLESHIR 396
           C  CG ++     L  H R
Sbjct: 63  CPECGKSFSRSDHLSRHQR 81

>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound To Dna Length = 87

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 43/113 (38%), Gaps = 28/113 (24%)
Query: 346 EKKYVCETCGASFVQWGSLNQHNLVHTAVNVVCSYCGNTYKNPKSLESHIRYAHTIRQKS 405
           EK Y C  CG SF Q  +L +H   HT            YK                   
Sbjct: 2   EKPYKCPECGKSFSQSSNLQKHQRTHTGEKP--------YK------------------- 34
Query: 406 ICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVHLKK 458
            C  CGK F     L++H   HT ++P+ C  C  +F    HL +H + H  K
Sbjct: 35  -CPECGKSFSQSSDLQKHQRTHTGEKPYKCPECGKSFSRSDHLSRHQRTHQNK 86

>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna Length = 82

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 33/80 (41%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 294 CHICKKVFLRYRNLVCHIKAVHEKVRDHQCSVCGKAFADITNMKVHMRIHTGEKKYVCET 353
           C IC K F R   L  H+  +H   R + C  CGK F   ++MK H  IHTGEK + C+ 
Sbjct: 4   CKICGKSFKRSSTLSTHL-LIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQV 62
Query: 354 CGASFVQWGSLNQHNLVHTA 373
           CG +F Q  +L  H+  HT 
Sbjct: 63  CGKAFSQSSNLITHSRKHTG 82

>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna Length = 82

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 378 CSYCGNTYKNPKSLESHIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDM 437
           C  CG ++K   +L +H+   H+  +   C  CGK F  K  +K+H  +HT ++P  C +
Sbjct: 4   CKICGKSFKRSSTLSTHL-LIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQV 62
Query: 438 CPSAFKLKKHLQQHYKVH 455
           C  AF    +L  H + H
Sbjct: 63  CGKAFSQSSNLITHSRKH 80

>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain Bound To The Adeno-Associated Virus P5 Initiator Element Length = 124

Iteration: 1
 Score = 62.4 bits (150), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 42/135 (31%), Positives = 59/135 (43%), Gaps = 31/135 (22%)
Query: 326 CGKAFADITNMKVHMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHTAVNVV-CSYCGNT 384
           C K F D + M+ H+  H G + +VC  CG +FV+   L +H LVHT      C++ G  
Sbjct: 13  CTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEG-- 69
Query: 385 YKNPKSLESHIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVC--DMCPSAF 442
                                    CGK F +   L+ H+ +HT DRP+VC  D C   F
Sbjct: 70  -------------------------CGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKF 104
Query: 443 KLKKHLQQHYKVHLK 457
               +L+ H   H K
Sbjct: 105 AQSTNLKSHILTHAK 119

>pdb|1TF6|A Chain A, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain Bound To The 5s Ribosomal Rna Gene Internal Control Region Length = 190

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 46/143 (32%), Positives = 64/143 (44%), Gaps = 16/143 (11%)
Query: 326 CGKAFADITNMKVHMRIHTGEKKYVC--ETCGASFVQWGSLNQHNLVHTAV-NVVCSY-- 380
           CG A+     ++ H+  HTGEK + C  E C   F     L +H+L HT   N  C    
Sbjct: 20  CGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDG 79
Query: 381 CGNTYKNPKSLESHIRYAHTIRQKSIC------DVCGKEFKMKKRLKEHMAVHTTDRPFV 434
           C   +    +++ H    H I+   IC      + CGK FK   +LK H   HT   P+ 
Sbjct: 80  CDLRFTTKANMKKHFNRFHNIK---ICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYE 136
Query: 435 C--DMCPSAFKLKKHLQQHYKVH 455
           C  + C   F L   L++H KVH
Sbjct: 137 CPHEGCDKRFSLPSRLKRHEKVH 159

>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain Repeats Of Murine Gli-Kruppel Family Member Hkr3 Length = 124

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 40/130 (30%), Positives = 54/130 (41%), Gaps = 25/130 (19%)
Query: 322 QCSVCGKAFADITNMKVHMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHTAVNVVCSYC 381
           +C  C K F     +KVH R HTGEK + C  CG  + +  +L    L H A N +    
Sbjct: 9   ECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENL----LEHEARNCM---- 60
Query: 382 GNTYKNPKSLESHIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMCPSA 441
                            +   Q   C VC + F+ +  L+ HM  HT + P+ C  C   
Sbjct: 61  -----------------NRSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQ 103
Query: 442 FKLKKHLQQH 451
           F  KK LQ H
Sbjct: 104 FMQKKDLQSH 113

>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE #2) Length = 90

Iteration: 1
 Score = 55.8 bits (133), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 46/85 (54%), Gaps = 3/85 (3%)
Query: 289 EKDHCCHI--CKKVFLRYRNLVCHIKAVHEKVRDHQCSVCGKAFADITNMKVHMRIHTGE 346
           E+ + C +  C + F +  NL  HI+ +H   +  QC +C + F+  T +  H+R HTGE
Sbjct: 2   ERPYACPVESCDRRFSQKTNLDTHIR-IHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGE 60
Query: 347 KKYVCETCGASFVQWGSLNQHNLVH 371
           K + C+ CG  F    + ++H  +H
Sbjct: 61  KPFACDICGRKFATLHTRDRHTKIH 85

>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE #2) Length = 90

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 44/89 (49%), Gaps = 5/89 (5%)
Query: 319 RDHQCSV--CGKAFADITNMKVHMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHTAVN- 375
           R + C V  C + F+  TN+  H+RIHTG+K + C  C  +F Q   LNQH   HT    
Sbjct: 3   RPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKP 62
Query: 376 VVCSYCGNTYKNPKSLESHIRYAHTIRQK 404
             C  CG  +    + + H +    +RQK
Sbjct: 63  FACDICGRKFATLHTRDRHTKIH--LRQK 89

>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE #2) Length = 90

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 381 CGNTYKNPKSLESHIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMCPS 440
           C   +    +L++HIR  HT ++   C +C + F     L +H+  HT ++PF CD+C  
Sbjct: 12  CDRRFSQKTNLDTHIRI-HTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFACDICGR 70
Query: 441 AFKLKKHLQQHYKVHLKK 458
            F       +H K+HL++
Sbjct: 71  KFATLHTRDRHTKIHLRQ 88

>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (Tatazf;clone #6) Length = 90

Iteration: 1
 Score = 55.5 bits (132), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 45/85 (52%), Gaps = 3/85 (3%)
Query: 289 EKDHCCHI--CKKVFLRYRNLVCHIKAVHEKVRDHQCSVCGKAFADITNMKVHMRIHTGE 346
           E+ + C +  C + F +  NL  HI+ +H   +  QC +C + F+   ++  H+R HTGE
Sbjct: 2   ERPYACPVESCDRRFSQKTNLDTHIR-IHTGQKPFQCRICMRNFSQQASLNAHIRTHTGE 60
Query: 347 KKYVCETCGASFVQWGSLNQHNLVH 371
           K + C+ CG  F    +  +H  +H
Sbjct: 61  KPFACDICGRKFATLHTRTRHTKIH 85

>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (Tatazf;clone #6) Length = 90

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 34/92 (36%), Positives = 44/92 (47%), Gaps = 11/92 (11%)
Query: 319 RDHQCSV--CGKAFADITNMKVHMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHTAVN- 375
           R + C V  C + F+  TN+  H+RIHTG+K + C  C  +F Q  SLN H   HT    
Sbjct: 3   RPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKP 62
Query: 376 VVCSYCGNTYKNPKSLESHIRYAHT---IRQK 404
             C  CG  +        H R  HT   +RQK
Sbjct: 63  FACDICGRKFAT-----LHTRTRHTKIHLRQK 89

>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (Tatazf;clone #6) Length = 90

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 381 CGNTYKNPKSLESHIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMCPS 440
           C   +    +L++HIR  HT ++   C +C + F  +  L  H+  HT ++PF CD+C  
Sbjct: 12  CDRRFSQKTNLDTHIRI-HTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFACDICGR 70
Query: 441 AFKLKKHLQQHYKVHLKK 458
            F       +H K+HL++
Sbjct: 71  KFATLHTRTRHTKIHLRQ 88

>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type Zinc-Binding Domain Of The Zinc Finger Protein 64, Isoforms 1 And 2 Length = 96

Iteration: 1
 Score = 55.1 bits (131), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 30/77 (38%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Query: 321 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHTAVNVV-CS 379
           H+C VCGK F+    +K HMR HTG K Y C+TC  +     SLN+H  +H+      C 
Sbjct: 9   HKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQ 68
Query: 380 YCGNTYKNPKSLESHIR 396
            C    +N   L  H+R
Sbjct: 69  ICPYASRNSSQLTVHLR 85

>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type Zinc-Binding Domain Of The Zinc Finger Protein 64, Isoforms 1 And 2 Length = 96

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Query: 378 CSYCGNTYKNPKSLESHIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDM 437
           C  CG  +     L++H+R  HT  +   C  C         L +H+ +H+ +RPF C +
Sbjct: 11  CEVCGKCFSRKDKLKTHMR-CHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQI 69
Query: 438 CPSAFKLKKHLQQHYKVH 455
           CP A +    L  H + H
Sbjct: 70  CPYASRNSSQLTVHLRSH 87

>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site) Length = 90

Iteration: 1
 Score = 55.1 bits (131), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 45/85 (52%), Gaps = 3/85 (3%)
Query: 289 EKDHCCHI--CKKVFLRYRNLVCHIKAVHEKVRDHQCSVCGKAFADITNMKVHMRIHTGE 346
           E+ + C +  C + F R  +L  HI+ +H   +  QC +C + F+   ++  H+R HTGE
Sbjct: 2   ERPYACPVESCDRRFSRSADLTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 347 KKYVCETCGASFVQWGSLNQHNLVH 371
           K + C+ CG  F +     +H  +H
Sbjct: 61  KPFACDICGRKFARSDERKRHTKIH 85

>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site) Length = 90

Iteration: 1
 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Query: 381 CGNTYKNPKSLESHIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMCPS 440
           C   +     L  HIR  HT ++   C +C + F     L  H+  HT ++PF CD+C  
Sbjct: 12  CDRRFSRSADLTRHIRI-HTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGR 70
Query: 441 AFKLKKHLQQHYKVHLKK 458
            F      ++H K+HL++
Sbjct: 71  KFARSDERKRHTKIHLRQ 88

>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domain Of Zinc Finger Protein 435 Length = 77

Iteration: 1
 Score = 55.1 bits (131), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 35/57 (61%)
Query: 319 RDHQCSVCGKAFADITNMKVHMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHTAVN 375
           R ++C  CGK+F+  +++  H R HTGEK Y C+ CG +F+Q   L  H+ VHT   
Sbjct: 17  RRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSG 73

>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domain Of Zinc Finger Protein 435 Length = 77

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 31/55 (56%)
Query: 402 RQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVHL 456
           R++  CD CGK F     L +H   HT ++P+ CD C  AF  + HL  H++VH 
Sbjct: 16  RRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHT 70

>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site Length = 90

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
Query: 289 EKDHCCHI--CKKVFLRYRNLVCHIKAVHEKVRDHQCSVCGKAFADITNMKVHMRIHTGE 346
           E+ + C +  C + F R   L  HI+ +H   +  QC +C + F+   ++  H+R HTGE
Sbjct: 2   ERPYACPVESCDRRFSRSAELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 347 KKYVCETCGASFVQWGSLNQHNLVH 371
           K + C+ CG  F +     +H  +H
Sbjct: 61  KPFACDICGRKFARSDERKRHTKIH 85

>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site Length = 90

Iteration: 1
 Score = 48.9 bits (115), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Query: 381 CGNTYKNPKSLESHIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMCPS 440
           C   +     L  HIR  HT ++   C +C + F     L  H+  HT ++PF CD+C  
Sbjct: 12  CDRRFSRSAELTRHIRI-HTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGR 70
Query: 441 AFKLKKHLQQHYKVHLKK 458
            F      ++H K+HL++
Sbjct: 71  KFARSDERKRHTKIHLRQ 88

>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed To Dna Length = 87

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
Query: 289 EKDHCCHI--CKKVFLRYRNLVCHIKAVHEKVRDHQCSVCGKAFADITNMKVHMRIHTGE 346
           E+ + C +  C + F R   L  HI+ +H   +  QC +C + F+   ++  H+R HTGE
Sbjct: 1   ERPYACPVESCDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 59
Query: 347 KKYVCETCGASFVQWGSLNQHNLVH 371
           K + C+ CG  F +     +H  +H
Sbjct: 60  KPFACDICGRKFARSDERKRHTKIH 84

>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed To Dna Length = 87

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Query: 381 CGNTYKNPKSLESHIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMCPS 440
           C   +     L  HIR  HT ++   C +C + F     L  H+  HT ++PF CD+C  
Sbjct: 11  CDRRFSRSDELTRHIRI-HTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGR 69
Query: 441 AFKLKKHLQQHYKVHLKK 458
            F      ++H K+HL++
Sbjct: 70  KFARSDERKRHTKIHLRQ 87

>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex Length = 90

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
Query: 289 EKDHCCHI--CKKVFLRYRNLVCHIKAVHEKVRDHQCSVCGKAFADITNMKVHMRIHTGE 346
           E+ + C +  C + F R   L  HI+ +H   +  QC +C + F+   ++  H+R HTGE
Sbjct: 2   ERPYACPVESCDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 347 KKYVCETCGASFVQWGSLNQHNLVH 371
           K + C+ CG  F +     +H  +H
Sbjct: 61  KPFACDICGRKFARSDERKRHTKIH 85

>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex Length = 90

Iteration: 1
 Score = 48.9 bits (115), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Query: 381 CGNTYKNPKSLESHIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMCPS 440
           C   +     L  HIR  HT ++   C +C + F     L  H+  HT ++PF CD+C  
Sbjct: 12  CDRRFSRSDELTRHIRI-HTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGR 70
Query: 441 AFKLKKHLQQHYKVHLKK 458
            F      ++H K+HL++
Sbjct: 71  KFARSDERKRHTKIHLRQ 88

>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site) Length = 90

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
Query: 289 EKDHCCHI--CKKVFLRYRNLVCHIKAVHEKVRDHQCSVCGKAFADITNMKVHMRIHTGE 346
           E+ + C +  C + F    NL  HI+ +H   +  QC +C + F+   ++  H+R HTGE
Sbjct: 2   ERPYACPVESCDRRFSDSSNLTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 347 KKYVCETCGASFVQWGSLNQHNLVH 371
           K + C+ CG  F +     +H  +H
Sbjct: 61  KPFACDICGRKFARSDERKRHTKIH 85

>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site) Length = 90

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 381 CGNTYKNPKSLESHIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMCPS 440
           C   + +  +L  HIR  HT ++   C +C + F     L  H+  HT ++PF CD+C  
Sbjct: 12  CDRRFSDSSNLTRHIRI-HTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGR 70
Query: 441 AFKLKKHLQQHYKVHLKK 458
            F      ++H K+HL++
Sbjct: 71  KFARSDERKRHTKIHLRQ 88

>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A Zif268- Dna Complex At 2.1 Angstroms Length = 87

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
Query: 289 EKDHCCHI--CKKVFLRYRNLVCHIKAVHEKVRDHQCSVCGKAFADITNMKVHMRIHTGE 346
           E+ + C +  C + F R   L  HI+ +H   +  QC +C + F+   ++  H+R HTGE
Sbjct: 2   ERPYACPVESCDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 347 KKYVCETCGASFVQWGSLNQHNLVH 371
           K + C+ CG  F +     +H  +H
Sbjct: 61  KPFACDICGRKFARSDERKRHTKIH 85

>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A Zif268- Dna Complex At 2.1 Angstroms Length = 87

Iteration: 1
 Score = 48.9 bits (115), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Query: 381 CGNTYKNPKSLESHIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMCPS 440
           C   +     L  HIR  HT ++   C +C + F     L  H+  HT ++PF CD+C  
Sbjct: 12  CDRRFSRSDELTRHIRI-HTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGR 70
Query: 441 AFKLKKHLQQHYKVHLK 457
            F      ++H K+HL+
Sbjct: 71  KFARSDERKRHTKIHLR 87

>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site) Length = 90

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Query: 264 YKCP--DCSAILLSYGGFTSHLDIHSGEKDHCCHICKKVFLRYRNLVCHIKAVHEKVRDH 321
           Y CP   C       G  T H+ IH+G+K   C IC + F R  +L  HI+  H   +  
Sbjct: 5   YACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR-THTGEKPF 63
Query: 322 QCSVCGKAFADITNMKVHMRIHTGEK 347
            C +CG+ FA     K H +IH  +K
Sbjct: 64  ACDICGRKFARSDERKRHTKIHLRQK 89

>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site) Length = 90

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/116 (27%), Positives = 47/116 (40%), Gaps = 32/116 (27%)
Query: 346 EKKYVC--ETCGASFVQWGSLNQHNLVHTAVNVVCSYCGNTYKNPKSLESHIRYAHTIRQ 403
           E+ Y C  E+C   F Q GSL +H  +HT                              Q
Sbjct: 2   ERPYACPVESCDRRFSQSGSLTRHIRIHTG-----------------------------Q 32
Query: 404 KSI-CDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVHLKK 458
           K   C +C + F     L  H+  HT ++PF CD+C   F      ++H K+HL++
Sbjct: 33  KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQ 88

>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc Finger Domain Bound To Dna Length = 119

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 50/109 (45%), Gaps = 5/109 (4%)
Query: 267 PDCSAILLSYGGFTSHLDIHSGEKDHCCHI--CKKVFLRYRNLVCHIKAVHEKVRDHQCS 324
           P C+           H   H+GEK + C    C++ F R   L  H +  H  V+  QC 
Sbjct: 12  PGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRR-HTGVKPFQCK 70
Query: 325 VCGKAFADITNMKVHMRIHTGEKKYVCE--TCGASFVQWGSLNQHNLVH 371
            C + F+   ++K H R HTGEK + C   +C   F +   L +H+ +H
Sbjct: 71  TCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119

>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc Finger Domain Bound To Dna Length = 119

Iteration: 1
 Score = 48.5 bits (114), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 51/134 (38%), Gaps = 32/134 (23%)
Query: 326 CGKAFADITNMKVHMRIHTGEKKYVCE--TCGASFVQWGSLNQHNLVHTAVNVVCSYCGN 383
           C K +  ++++++H R HTGEK Y C+   C   F +   L +H   HT V         
Sbjct: 14  CNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPF------ 67
Query: 384 TYKNPKSLESHIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVC--DMCPSA 441
                                  C  C ++F     LK H   HT ++PF C    C   
Sbjct: 68  ----------------------QCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKK 105
Query: 442 FKLKKHLQQHYKVH 455
           F     L +H+ +H
Sbjct: 106 FARSDELVRHHNMH 119

>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345 In Zinc Finger Protein 278 Length = 95

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 38/81 (46%), Gaps = 3/81 (3%)
Query: 323 CSVCGKAFADITNMKVHMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHTAV---NVVCS 379
           C +CGK F D+ ++  H   H+GEK Y C  CG  F +   ++ H   H        +C 
Sbjct: 10  CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQ 69
Query: 380 YCGNTYKNPKSLESHIRYAHT 400
            CG  +  P  L  HI+  H+
Sbjct: 70  SCGKGFSRPDHLNGHIKQVHS 90

>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345 In Zinc Finger Protein 278 Length = 95

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 3/84 (3%)
Query: 372 TAVNVVCSYCGNTYKNPKSLESHIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVH--TT 429
            +  V C  CG  +++   L  H + +H+  +   C VCG  FK K R+  H+  H  + 
Sbjct: 4   GSSGVACEICGKIFRDVYHLNRH-KLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSV 62
Query: 430 DRPFVCDMCPSAFKLKKHLQQHYK 453
            +P++C  C   F    HL  H K
Sbjct: 63  GKPYICQSCGKGFSRPDHLNGHIK 86

>pdb|2GLI|A Chain A, Five-Finger GliDNA COMPLEX Length = 155

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/128 (32%), Positives = 63/128 (49%), Gaps = 14/128 (10%)
Query: 285 IHSGEKDHCCHI--CKKVFLRYRN---LVCHIKAVHEKVRDHQCSV--CGKAFADITNMK 337
           IH   K+  CH   C +    ++    LV H++  H   + H+C+   C K+++ + N+K
Sbjct: 28  IHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRR-HTGEKPHKCTFEGCRKSYSRLENLK 86
Query: 338 VHMRIHTGEKKYVC--ETCGASFVQWGSLNQH-NLVHTAVN-VVCSYCGNT--YKNPKSL 391
            H+R HTGEK Y+C  E C  +F       +H N  H+     VC   G T  Y +P SL
Sbjct: 87  THLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSL 146
Query: 392 ESHIRYAH 399
             H++  H
Sbjct: 147 RKHVKTVH 154

>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse Protein Odd-Skipped-Related 2 Splicing Isoform 2 Length = 106

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Query: 289 EKDHCCHICKKVFLRYRNLVCHIKAVHEKVRDHQCSVCGKAFADITNMKVHMRIHTGEKK 348
           +K+  C  C + F +  NL+ H +  H   R + C +C KAF    +++ H  IH+ EK 
Sbjct: 15  KKEFICKFCGRHFTKSYNLLIHER-THTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKP 73
Query: 349 YVCETCGASFVQWGSLNQHNLVHTAVN 375
           + C+ CG  F Q  +L  H  +H   +
Sbjct: 74  FKCQECGKGFCQSRTLAVHKTLHMQTS 100

>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse Protein Odd-Skipped-Related 2 Splicing Isoform 2 Length = 106

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Query: 372 TAVNVVCSYCGNTYKNPKSLESHIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDR 431
           T    +C +CG  +    +L  H R  HT  +   CD+C K F+ +  L++H  +H+ ++
Sbjct: 14  TKKEFICKFCGRHFTKSYNLLIHER-THTDERPYTCDICHKAFRRQDHLRDHRYIHSKEK 72
Query: 432 PFVCDMCPSAFKLKKHLQQHYKVHLK 457
           PF C  C   F   + L  H  +H++
Sbjct: 73  PFKCQECGKGFCQSRTLAVHKTLHMQ 98

>pdb|2WBU|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound To Its Target Dna Length = 90

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 37/84 (44%), Gaps = 5/84 (5%)
Query: 377 VCSY--CGNTYKNPKSLESHIRYAHTIRQKSICD--VCGKEFKMKKRLKEHMAVHTTDRP 432
            C Y  CG TY     L++H+R  HT  +   CD   CG +F     L  H   HT  RP
Sbjct: 8   TCDYAGCGKTYTKSSHLKAHLR-THTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRP 66
Query: 433 FVCDMCPSAFKLKKHLQQHYKVHL 456
           F C  C  AF    HL  H K H 
Sbjct: 67  FQCQKCDRAFSRSDHLALHMKRHF 90

>pdb|2WBS|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound To Its Target Dna Length = 89

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 37/84 (44%), Gaps = 5/84 (5%)
Query: 377 VCSY--CGNTYKNPKSLESHIRYAHTIRQKSICDV--CGKEFKMKKRLKEHMAVHTTDRP 432
            C Y  CG TY     L++H+R  HT  +   CD   CG +F     L  H   HT  RP
Sbjct: 7   TCDYAGCGKTYTKSSHLKAHLR-THTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRP 65
Query: 433 FVCDMCPSAFKLKKHLQQHYKVHL 456
           F C  C  AF    HL  H K H 
Sbjct: 66  FQCQKCDRAFSRSDHLALHMKRHF 89

>pdb|1X6E|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of Human Zinc Finger Protein 24 Length = 72

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 32/55 (58%)
Query: 319 RDHQCSVCGKAFADITNMKVHMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHTA 373
           + + C  CGKAF+  + +  H R+HTGEK Y C  CG +F Q   L  H  +HT+
Sbjct: 13  KPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTS 67

>pdb|2LT7|A Chain A, Solution Nmr Structure Of Kaiso Zinc Finger Dna Binding Domain In Complex With Kaiso Binding Site Dna Length = 133

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 323 CSVCGKAFADITNMKVHMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHTA-VNVVCSYC 381
           C VC +++  +T+++ H  IH+ EKKY C  C   F       +H + HT      C  C
Sbjct: 25  CIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLAC 84
Query: 382 GNTYKNPKSLESHIRYAHT 400
           G ++ N + + SHI+  H+
Sbjct: 85  GKSFINYQFMSSHIKSVHS 103

>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens, Northeast Structural Genomics Consortium Length = 74

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 289 EKDHCCHICKKVFLRYRNLVCHIKAVHEKVRDHQCSVCGKAFADITNMKVHMRIHTGEK 347
           +K + C  C+  F    NL  H K VH   + ++C++CG  F    N+K H RIH+GEK
Sbjct: 15  DKPYKCDRCQASFRYKGNLASH-KTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEK 72

>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens, Northeast Structural Genomics Consortium Length = 74

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 17/49 (34%), Positives = 28/49 (57%)
Query: 407 CDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVH 455
           CD C   F+ K  L  H  VHT ++P+ C++C + F    +L+ H ++H
Sbjct: 20  CDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIH 68

>pdb|2DLK|A Chain A, Solution Structure Of The First And The Second Zf-C2h2 Domains Of Zinc Finger Protein 692 Length = 79

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/60 (41%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
Query: 381 CGNTYKNPKSLESHIRYAHTIRQKSIC---DVCGKEFKMKKRLKEHMAVHTTDRPFVCDM 437
           CG  + N + L  H +Y H I QKS       CGK F  KK LKEHM +H+  R ++C+ 
Sbjct: 15  CGRIFSNRQYLNHHKKYQH-IHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEF 73

>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2 Domains Of Human Zinc Finger Protein 297b Length = 110

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 381 CGNTYKNPKSLESHIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMCPS 440
           CG ++ +    + H+     +R    C VCGK+FKMK  L  HM +HT  +P+ C++C  
Sbjct: 15  CGKSFTHKSQRDRHMSMHLGLRPYG-CGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAK 73
Query: 441 AFKLKKHLQQH 451
            F  +    +H
Sbjct: 74  RFMWRDSFHRH 84

>pdb|2RPC|A Chain A, Solution Structure Of The Tandem Zf-C2h2 Domains From The Human Zinc Finger Protein Zic 3 Length = 155

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/100 (35%), Positives = 44/100 (44%), Gaps = 13/100 (13%)
Query: 286 HSGEKDHCCHIC--------KKVFLRYRNLVCHIKAVHEKVRDHQCSV--CGKAFADITN 335
           H G  +   H+C         K F     LV HI+ VH   +   C    CGK FA   N
Sbjct: 49  HVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIR-VHTGEKPFPCPFPGCGKIFARSEN 107
Query: 336 MKVHMRIHTGEKKYVC--ETCGASFVQWGSLNQHNLVHTA 373
           +K+H R HTGEK + C  E C   F       +H  VHT+
Sbjct: 108 LKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTS 147

>pdb|3UK3|C Chain C, Crystal Structure Of Znf217 Bound To Dna Length = 57

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 21/46 (45%), Positives = 26/46 (56%)
Query: 322 QCSVCGKAFADITNMKVHMRIHTGEKKYVCETCGASFVQWGSLNQH 367
           +CS CGK F     + +H+R HTGEK Y CE C  +  Q  SL  H
Sbjct: 6   ECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYH 51

>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2 Domains From Human Kruppel-Like Factor 5 Length = 100

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 39/86 (45%), Gaps = 5/86 (5%)
Query: 316 EKVRDHQCSV--CGKAFADITNMKVHMRIHTGEKKYVC--ETCGASFVQWGSLNQHNLVH 371
           EK R H C    C K +   +++K H+R HTGEK Y C  E C   F +   L +H   H
Sbjct: 11  EKRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKH 70
Query: 372 TAVNVV-CSYCGNTYKNPKSLESHIR 396
           T      C  C  ++     L  H++
Sbjct: 71  TGAKPFQCGVCNRSFSRSDHLALHMK 96

>pdb|1LLM|C Chain C, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna Length = 88

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 16/56 (28%), Positives = 30/56 (53%)
Query: 322 QCSVCGKAFADITNMKVHMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHTAVNVV 377
           QC +C + F+   ++  H+R HTGEK + C+ CG  F +     +H  +   + ++
Sbjct: 5   QCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHILPIL 60

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	459
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	1e-25
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	2e-24
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	1e-17
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	1e-20
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	4e-10
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	7e-20
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	5e-19
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	5e-09
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	1e-18
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	1e-14
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	3e-14
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	7e-14
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	2e-18
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	8e-17
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	1e-10
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	6e-18
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	2e-16
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	2e-14
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	1e-12
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	1e-17
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	2e-16
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	8e-14
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	8e-08
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	8e-17
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	1e-16
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	4e-14
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	2e-10
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	3e-06
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	1e-16
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	2e-16
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	3e-12
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	2e-06
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	2e-16
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	3e-16
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	4e-07
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	2e-16
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	4e-14
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	4e-12
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	4e-06
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	9e-16
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	5e-13
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	2e-05
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	1e-15
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	2e-10
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	3e-06
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	3e-06
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	4e-15
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	7e-13
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	2e-10
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	2e-07
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	4e-15
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	7e-12
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	3e-08
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	1e-14
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	5e-09
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	4e-05
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	2e-14
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	4e-13
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	2e-12
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	3e-06
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	7e-14
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	1e-09
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	2e-08
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	2e-07
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	8e-14
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	1e-10
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	2e-09
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	4e-09
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	2e-13
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	5e-12
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	1e-09
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	1e-06
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	3e-13
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	2e-10
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	1e-12
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	2e-12
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	2e-08
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	3e-06
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	2e-12
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	4e-11
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	4e-08
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	4e-06
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	4e-12
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	4e-10
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	2e-11
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	6e-06
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	8e-06
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	6e-11
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	4e-10
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	8e-07
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	1e-06
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	1e-10
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	4e-07
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	2e-09
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	2e-05
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	5e-09
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	7e-09
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	7e-09
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	3e-08
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	9e-09
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	6e-07
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	9e-09
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	8e-06
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	1e-08
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	9e-08
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	6e-05
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	3e-04
2epa_A	72	Krueppel-like factor 10; transforming growth facto	2e-08
2epa_A	72	Krueppel-like factor 10; transforming growth facto	2e-04
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	3e-08
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	8e-07
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	3e-08
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	6e-06
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	9e-05
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	4e-08
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	5e-06
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	8e-08
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	6e-07
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	8e-08
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	2e-06
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	1e-07
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	1e-06
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	1e-07
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	7e-07
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	2e-07
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	3e-06
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	2e-07
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	4e-04
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	2e-07
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	2e-06
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	2e-07
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	6e-06
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	2e-07
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	1e-06
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	2e-07
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	2e-06
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	2e-07
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	1e-06
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	2e-07
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	2e-06
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	2e-07
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	8e-07
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	2e-07
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	4e-06
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	2e-07
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	3e-07
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	2e-07
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	2e-06
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	2e-07
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	4e-07
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	2e-07
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	2e-06
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	3e-07
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	2e-06
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	3e-07
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	6e-06
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	3e-07
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	1e-06
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	3e-07
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	1e-05
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	3e-07
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	9e-07
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	3e-07
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	9e-05
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	3e-07
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	2e-06
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	3e-07
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	7e-07
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	3e-07
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	1e-06
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	3e-07
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	1e-06
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	3e-07
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	3e-06
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	3e-07
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	8e-07
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	3e-07
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	2e-06
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	3e-07
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	4e-06
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	3e-07
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	2e-06
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	3e-07
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	3e-06
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	4e-07
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	3e-06
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	4e-07
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	2e-06
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	4e-07
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	3e-06
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	4e-07
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	1e-06
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	4e-07
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	1e-06
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	5e-07
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	1e-06
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	5e-07
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	7e-04
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	5e-07
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	2e-06
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	5e-07
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	7e-07
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	5e-07
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	3e-06
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	5e-07
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	1e-06
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	5e-07
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	6e-06
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	5e-07
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	1e-06
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	5e-07
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	2e-06
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	5e-07
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	6e-06
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	5e-07
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	1e-06
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	5e-07
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	8e-07
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	6e-07
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	3e-06
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	6e-07
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	6e-07
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	6e-07
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	1e-06
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	6e-07
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	6e-06
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	6e-07
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	1e-06
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	6e-07
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	2e-06
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	7e-07
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	2e-06
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	7e-07
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	3e-06
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	7e-07
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	6e-06
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	7e-07
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	3e-06
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	7e-07
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	8e-07
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	7e-07
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	1e-05
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	8e-07
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	2e-06
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	8e-07
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	4e-04
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	9e-07
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	1e-06
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	9e-07
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	2e-06
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	9e-07
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	4e-06
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	9e-07
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	2e-06
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	1e-06
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	3e-06
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	1e-06
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	3e-06
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	1e-06
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	5e-06
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	1e-06
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	2e-06
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	1e-06
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	8e-06
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1} Len	1e-06
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	1e-06
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	2e-06
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	1e-06
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	2e-06
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	1e-06
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	8e-06
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	2e-06
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	5e-05
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	2e-06
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	3e-05
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	2e-06
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	1e-05
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	2e-06
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	6e-06
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	3e-06
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	9e-06
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	3e-06
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	3e-06
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	4e-06
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	8e-05
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	4e-06
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	4e-06
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	4e-06
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	2e-05
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	7e-06
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	4e-05
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	2e-05
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	2e-05
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	8e-05
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	1e-04
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	3e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	5e-04

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score =  102 bits (256), Expect = 1e-25
 Identities = 59/193 (30%), Positives = 79/193 (40%), Gaps = 31/193 (16%)

Query: 264 YKCPDCSAILLSYGGFTSHLDIHSGEKDHCCHICKKVFLRYRNLVCHIKAVHEKVRDHQC 323
           Y CP+C            H   H+GEK + C  C K F   ++L  H +  H   + ++C
Sbjct: 22  YACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRH-QRTHTGEKPYKC 80

Query: 324 SVCGKAFADITNMKVHMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHTAVNVVCSYCG- 382
             CGK+F+   N++ H R HTGEK Y C  CG SF Q   L  H   HT         G 
Sbjct: 81  PECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHT---------GE 131

Query: 383 NTYKNPKSLESHIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMCPSAF 442
             YK                    C  CGK F  +  L  H   HT ++P+ C  C  +F
Sbjct: 132 KPYK--------------------CPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSF 171

Query: 443 KLKKHLQQHYKVH 455
             +  L  H + H
Sbjct: 172 SRRDALNVHQRTH 184

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 98.7 bits (247), Expect = 2e-24
 Identities = 52/177 (29%), Positives = 73/177 (41%), Gaps = 29/177 (16%)

Query: 279 FTSHLDIHSGEKDHCCHICKKVFLRYRNLVCHIKAVHEKVRDHQCSVCGKAFADITNMKV 338
             +   +  GEK + C  C K F R  +L  H +  H   + ++C  CGK+F+D  ++  
Sbjct: 9   SVAQAALEPGEKPYACPECGKSFSRSDHLAEH-QRTHTGEKPYKCPECGKSFSDKKDLTR 67

Query: 339 HMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHTAVNVVCSYCGNTYKNPKSLESHIRYA 398
           H R HTGEK Y C  CG SF Q  +L  H   HT            Y             
Sbjct: 68  HQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEK--------PYA------------ 107

Query: 399 HTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVH 455
                   C  CGK F     L+ H   HT ++P+ C  C  +F  + +L  H + H
Sbjct: 108 --------CPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTH 156

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 79.8 bits (198), Expect = 1e-17
 Identities = 39/128 (30%), Positives = 57/128 (44%), Gaps = 2/128 (1%)

Query: 329 AFADITNMKVHMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHTAVN-VVCSYCGNTYKN 387
           +    ++      +  GEK Y C  CG SF +   L +H   HT      C  CG ++ +
Sbjct: 2   SEFGSSSSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSD 61

Query: 388 PKSLESHIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMCPSAFKLKKH 447
            K L  H R  HT  +   C  CGK F  +  L+ H   HT ++P+ C  C  +F    H
Sbjct: 62  KKDLTRHQR-THTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAH 120

Query: 448 LQQHYKVH 455
           L+ H + H
Sbjct: 121 LRAHQRTH 128

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Length = 190

 Score = 88.0 bits (219), Expect = 1e-20
 Identities = 43/185 (23%), Positives = 64/185 (34%), Gaps = 15/185 (8%)

Query: 282 HLDIHSGEKDHCCHI--CKKVFLRYRNLVCHIKAVHEKVRDHQCS--VCGKAFADITNMK 337
              +    K + C    C   + +   L  H    H   +   C    C K F  + ++ 
Sbjct: 3   EKALPVVYKRYICSFADCGAAYNKNWKLQAH-LCKHTGEKPFPCKEEGCEKGFTSLHHLT 61

Query: 338 VHMRIHTGEKKYVCE--TCGASFVQWGSLNQHNLVHT---AVNVVCSY--CGNTYKNPKS 390
            H   HTGEK + C+   C   F    ++ +H            VC +  CG  +K    
Sbjct: 62  RHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQ 121

Query: 391 LESHIRYAHTIRQKSIC--DVCGKEFKMKKRLKEHMAVHTTDRPFVCDMCPSAFKLKKHL 448
           L+ H   +HT +    C  + C K F +  RLK H  VH        D C    K     
Sbjct: 122 LKVHQF-SHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLY 180

Query: 449 QQHYK 453
            +H  
Sbjct: 181 LKHVA 185

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Length = 190

 Score = 58.0 bits (141), Expect = 4e-10
 Identities = 22/100 (22%), Positives = 37/100 (37%), Gaps = 8/100 (8%)

Query: 280 TSHLDIHSGEKDHC--CHI--CKKVFLRYRNLVCHIKAVHEKVRDHQCS--VCGKAFADI 333
             H +     K     CH   C K F ++  L  H +  H +   ++C    C K F+  
Sbjct: 91  KKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVH-QFSHTQQLPYECPHEGCDKRFSLP 149

Query: 334 TNMKVHMRIHTGEKKYVCETCGASFVQWGSLNQHNL-VHT 372
           + +K H ++H G      ++C      W    +H    H 
Sbjct: 150 SRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAECHQ 189

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 124

 Score = 84.1 bits (209), Expect = 7e-20
 Identities = 38/114 (33%), Positives = 54/114 (47%), Gaps = 7/114 (6%)

Query: 264 YKCPDCSAILLSYGGFTSHLDIHSGEKDHCCHICKKVFLRYRNLVCH--IKAVH--EKVR 319
            +CP C    LS      H   H+GEK   C  C K + R  NL+ H     ++  E+V 
Sbjct: 8   VECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQV- 66

Query: 320 DHQCSVCGKAFADITNMKVHMRIHTGEKKYVCETCGASFVQWGSLNQHNL-VHT 372
              CSVC + F     +++HM  HTGE  Y C +C   F+Q   L  H + +H+
Sbjct: 67  -FTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHS 119

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 124

 Score = 81.8 bits (203), Expect = 5e-19
 Identities = 38/133 (28%), Positives = 55/133 (41%), Gaps = 31/133 (23%)

Query: 322 QCSVCGKAFADITNMKVHMRIHTGEKKYVCETCGASFVQWGSLNQH---NLVHTAVNVVC 378
           +C  C K F     +KVH R HTGEK + C  CG  + +  +L +H   N ++ +  V  
Sbjct: 9   ECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQV-- 66

Query: 379 SYCGNTYKNPKSLESHIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMC 438
                 +                     C VC + F+ +  L+ HM  HT + P+ C  C
Sbjct: 67  ------FT--------------------CSVCQETFRRRMELRLHMVSHTGEMPYKCSSC 100

Query: 439 PSAFKLKKHLQQH 451
              F  KK LQ H
Sbjct: 101 SQQFMQKKDLQSH 113

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 124

 Score = 53.3 bits (129), Expect = 5e-09
 Identities = 20/88 (22%), Positives = 38/88 (43%), Gaps = 5/88 (5%)

Query: 264 YKCPDCSAILLSYGGFTSH---LDIHSGEKDHCCHICKKVFLRYRNLVCHIKAVHEKVRD 320
           ++CP C            H     ++  E+   C +C++ F R   L  H+   H     
Sbjct: 36  FECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHMV-SHTGEMP 94

Query: 321 HQCSVCGKAFADITNMKVHM-RIHTGEK 347
           ++CS C + F    +++ HM ++H+G  
Sbjct: 95  YKCSSCSQQFMQKKDLQSHMIKLHSGPS 122

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1 Length = 106

 Score = 80.2 bits (199), Expect = 1e-18
 Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 1/93 (1%)

Query: 280 TSHLDIHSGEKDHCCHICKKVFLRYRNLVCHIKAVHEKVRDHQCSVCGKAFADITNMKVH 339
           +        +K+  C  C + F +  NL+ H +  H   R + C +C KAF    +++ H
Sbjct: 6   SGGRLPSKTKKEFICKFCGRHFTKSYNLLIH-ERTHTDERPYTCDICHKAFRRQDHLRDH 64

Query: 340 MRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
             IH+ EK + C+ CG  F Q  +L  H  +H 
Sbjct: 65  RYIHSKEKPFKCQECGKGFCQSRTLAVHKTLHM 97

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1 Length = 106

 Score = 68.6 bits (169), Expect = 1e-14
 Identities = 26/116 (22%), Positives = 38/116 (32%), Gaps = 30/116 (25%)

Query: 321 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHTAVNVVCSY 380
             C  CG+ F    N+ +H R HT E+ Y C+ C  +F +   L  H  +H+        
Sbjct: 18  FICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHS-------- 69

Query: 381 CGNT-YKNPKSLESHIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVC 435
                +K                    C  CGK F   + L  H  +H        
Sbjct: 70  -KEKPFK--------------------CQECGKGFCQSRTLAVHKTLHMQTSSPTA 104

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1 Length = 106

 Score = 67.8 bits (167), Expect = 3e-14
 Identities = 26/119 (21%), Positives = 44/119 (36%), Gaps = 30/119 (25%)

Query: 338 VHMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHTAVNVVCSYCGNT-YKNPKSLESHIR 396
                   +K+++C+ CG  F +  +L  H   HT             Y           
Sbjct: 7   GGRLPSKTKKEFICKFCGRHFTKSYNLLIHERTHT---------DERPYT---------- 47

Query: 397 YAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVH 455
                     CD+C K F+ +  L++H  +H+ ++PF C  C   F   + L  H  +H
Sbjct: 48  ----------CDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAVHKTLH 96

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1 Length = 106

 Score = 66.7 bits (164), Expect = 7e-14
 Identities = 23/90 (25%), Positives = 35/90 (38%), Gaps = 1/90 (1%)

Query: 264 YKCPDCSAILLSYGGFTSHLDIHSGEKDHCCHICKKVFLRYRNLVCHIKAVHEKVRDHQC 323
           + C  C            H   H+ E+ + C IC K F R  +L  H + +H K +  +C
Sbjct: 18  FICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDH-RYIHSKEKPFKC 76

Query: 324 SVCGKAFADITNMKVHMRIHTGEKKYVCET 353
             CGK F     + VH  +H         +
Sbjct: 77  QECGKGFCQSRTLAVHKTLHMQTSSPTAAS 106

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Length = 155

 Score = 81.2 bits (201), Expect = 2e-18
 Identities = 38/168 (22%), Positives = 54/168 (32%), Gaps = 38/168 (22%)

Query: 280 TSHLDIHSGEKDHCCHICKKVFLRYRNLVCHIKAVH--------EKVRDHQCSVCGKAFA 331
            S   I   +       C + F     LV H+   H              +C   GK+F 
Sbjct: 14  LSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFK 73

Query: 332 DITNMKVHMRIHTGEKKYVC--ETCGASFVQWGSLNQHNLVHTAVN-VVCSYCGNTYKNP 388
               +  H+R+HTGEK + C    CG  F +  +L  H   HT      C + G      
Sbjct: 74  AKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEG------ 127

Query: 389 KSLESHIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCD 436
                                C + F      K+HM VHT+D+     
Sbjct: 128 ---------------------CDRRFANSSDRKKHMHVHTSDKSGPSS 154

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Length = 155

 Score = 76.6 bits (189), Expect = 8e-17
 Identities = 34/144 (23%), Positives = 50/144 (34%), Gaps = 15/144 (10%)

Query: 326 CGKAFADITNMKVHMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT----------AVN 375
            G +   I        I   +     ++C  +F     L  H  +               
Sbjct: 3   SGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYW 62

Query: 376 VVCSYCGNTYKNPKSLESHIRYAHTIRQKSICDV--CGKEFKMKKRLKEHMAVHTTDRPF 433
             C   G ++K    L +HIR  HT  +   C    CGK F   + LK H   HT ++PF
Sbjct: 63  EECPREGKSFKAKYKLVNHIR-VHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPF 121

Query: 434 VCDM--CPSAFKLKKHLQQHYKVH 455
            C+   C   F      ++H  VH
Sbjct: 122 KCEFEGCDRRFANSSDRKKHMHVH 145

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Length = 155

 Score = 58.8 bits (143), Expect = 1e-10
 Identities = 37/173 (21%), Positives = 59/173 (34%), Gaps = 28/173 (16%)

Query: 186 KCEESFDNCNNLWSHMFIKHENSDFVCNLCP---SHSKVLVRYVHSAVRHMKKHHKLQLS 242
               S        S  +I           C    S    LV        H+   H   + 
Sbjct: 2   SSGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVT-------HVTMEH---VG 51

Query: 243 IPKAHNYFRKKTVIHVNKKVNYKCPDCSAILLSYGGFTSHLDIHSGEKDHCCHI--CKKV 300
            P+ +N+               +CP       +     +H+ +H+GEK   C    C K+
Sbjct: 52  GPEQNNHVCYW----------EECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKI 101

Query: 301 FLRYRNLVCHIKAVHEKVRDHQCSV--CGKAFADITNMKVHMRIHTGEKKYVC 351
           F R  NL  H +  H   +  +C    C + FA+ ++ K HM +HT +K    
Sbjct: 102 FARSENLKIHKR-THTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDKSGPS 153

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 96

 Score = 77.8 bits (193), Expect = 6e-18
 Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 1/87 (1%)

Query: 286 HSGEKDHCCHICKKVFLRYRNLVCHIKAVHEKVRDHQCSVCGKAFADITNMKVHMRIHTG 345
                 H C +C K F R   L  H++  H  V+ ++C  C  A AD +++  H+RIH+ 
Sbjct: 3   SGSSGPHKCEVCGKCFSRKDKLKTHMR-CHTGVKPYKCKTCDYAAADSSSLNKHLRIHSD 61

Query: 346 EKKYVCETCGASFVQWGSLNQHNLVHT 372
           E+ + C+ C  +      L  H   HT
Sbjct: 62  ERPFKCQICPYASRNSSQLTVHLRSHT 88

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 96

 Score = 73.2 bits (181), Expect = 2e-16
 Identities = 32/116 (27%), Positives = 45/116 (38%), Gaps = 30/116 (25%)

Query: 321 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHTAVNVVCSY 380
           H+C VCGK F+    +K HMR HTG K Y C+TC  +     SLN+H  +H+        
Sbjct: 9   HKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHS-------- 60

Query: 381 CG-NTYKNPKSLESHIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVC 435
                +K                    C +C    +   +L  H+  HT D     
Sbjct: 61  -DERPFK--------------------CQICPYASRNSSQLTVHLRSHTGDSGPSS 95

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 96

 Score = 67.4 bits (166), Expect = 2e-14
 Identities = 22/88 (25%), Positives = 36/88 (40%), Gaps = 1/88 (1%)

Query: 264 YKCPDCSAILLSYGGFTSHLDIHSGEKDHCCHICKKVFLRYRNLVCHIKAVHEKVRDHQC 323
           +KC  C           +H+  H+G K + C  C        +L  H   +H   R  +C
Sbjct: 9   HKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKH-LRIHSDERPFKC 67

Query: 324 SVCGKAFADITNMKVHMRIHTGEKKYVC 351
            +C  A  + + + VH+R HTG+     
Sbjct: 68  QICPYASRNSSQLTVHLRSHTGDSGPSS 95

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 96

 Score = 62.8 bits (154), Expect = 1e-12
 Identities = 27/113 (23%), Positives = 37/113 (32%), Gaps = 28/113 (24%)

Query: 343 HTGEKKYVCETCGASFVQWGSLNQHNLVHTAVNVVCSYCGNTYKNPKSLESHIRYAHTIR 402
                 + CE CG  F +   L  H   HT V          YK                
Sbjct: 3   SGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGV--------KPYK---------------- 38

Query: 403 QKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVH 455
               C  C         L +H+ +H+ +RPF C +CP A +    L  H + H
Sbjct: 39  ----CKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVHLRSH 87

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* Length = 119

 Score = 77.9 bits (193), Expect = 1e-17
 Identities = 34/134 (25%), Positives = 53/134 (39%), Gaps = 32/134 (23%)

Query: 326 CGKAFADITNMKVHMRIHTGEKKYVCET--CGASFVQWGSLNQHNLVHTAVNVVCSYCGN 383
           C K +  ++++++H R HTGEK Y C+   C   F +   L +H   HT V         
Sbjct: 14  CNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVK-------- 65

Query: 384 TYKNPKSLESHIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDM--CPSA 441
            ++                    C  C ++F     LK H   HT ++PF C    C   
Sbjct: 66  PFQ--------------------CKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKK 105

Query: 442 FKLKKHLQQHYKVH 455
           F     L +H+ +H
Sbjct: 106 FARSDELVRHHNMH 119

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* Length = 119

 Score = 74.1 bits (183), Expect = 2e-16
 Identities = 34/114 (29%), Positives = 51/114 (44%), Gaps = 7/114 (6%)

Query: 264 YKC--PDCSAILLSYGGFTSHLDIHSGEKDHCCHI--CKKVFLRYRNLVCHIKAVHEKVR 319
           + C  P C+           H   H+GEK + C    C++ F R   L  H +  H  V+
Sbjct: 7   FMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQR-RHTGVK 65

Query: 320 DHQCSVCGKAFADITNMKVHMRIHTGEKKYVCET--CGASFVQWGSLNQHNLVH 371
             QC  C + F+   ++K H R HTGEK + C    C   F +   L +H+ +H
Sbjct: 66  PFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* Length = 119

 Score = 66.8 bits (164), Expect = 8e-14
 Identities = 28/92 (30%), Positives = 41/92 (44%), Gaps = 9/92 (9%)

Query: 287 SGEKDHCC--HICKKVFLRYRNLVCHIKAVH--EKVRDHQCSV--CGKAFADITNMKVHM 340
           S ++   C    C K + +  +L  H +  H  EK   +QC    C + F+    +K H 
Sbjct: 2   SEKRPFMCAYPGCNKRYFKLSHLQMHSR-KHTGEK--PYQCDFKDCERRFSRSDQLKRHQ 58

Query: 341 RIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
           R HTG K + C+TC   F +   L  H   HT
Sbjct: 59  RRHTGVKPFQCKTCQRKFSRSDHLKTHTRTHT 90

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* Length = 119

 Score = 49.8 bits (120), Expect = 8e-08
 Identities = 26/117 (22%), Positives = 40/117 (34%), Gaps = 34/117 (29%)

Query: 344 TGEKKYVCE--TCGASFVQWGSLNQHNLVHTAVNVVCSYCGNT-YKNPKSLESHIRYAHT 400
           + ++ ++C    C   + +   L  H+  HT         G   Y+              
Sbjct: 2   SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHT---------GEKPYQ-------------- 38

Query: 401 IRQKSICDV--CGKEFKMKKRLKEHMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVH 455
                 CD   C + F    +LK H   HT  +PF C  C   F    HL+ H + H
Sbjct: 39  ------CDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRTH 89

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A* Length = 124

 Score = 75.2 bits (186), Expect = 8e-17
 Identities = 41/117 (35%), Positives = 53/117 (45%), Gaps = 12/117 (10%)

Query: 264 YKCP--DCSAILLSYGGFTSHLDIHSGEKDHCCHICKKVFLRYRNLVCHIKAVH--EKVR 319
             CP   C+ +         HL  H G + H C  C K F+    L  H   VH  EK  
Sbjct: 6   IACPHKGCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQL-VHTGEK-- 61

Query: 320 DHQCSV--CGKAFADITNMKVHMRIHTGEKKYVCET--CGASFVQWGSLNQHNLVHT 372
             QC+   CGK F+   N++ H+RIHTG++ YVC    C   F Q  +L  H L H 
Sbjct: 62  PFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHA 118

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A* Length = 124

 Score = 74.9 bits (185), Expect = 1e-16
 Identities = 40/132 (30%), Positives = 57/132 (43%), Gaps = 29/132 (21%)

Query: 326 CGKAFADITNMKVHMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHTAVNVVCSYCGNTY 385
           C K F D + M+ H+  H G + +VC  CG +FV+   L +H LVHT             
Sbjct: 13  CTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTG------------ 59

Query: 386 KNPKSLESHIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDM--CPSAFK 443
           + P        +  T         CGK F +   L+ H+ +HT DRP+VC    C   F 
Sbjct: 60  EKP--------FQCTFEG------CGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFA 105

Query: 444 LKKHLQQHYKVH 455
              +L+ H   H
Sbjct: 106 QSTNLKSHILTH 117

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A* Length = 124

 Score = 67.9 bits (167), Expect = 4e-14
 Identities = 39/149 (26%), Positives = 55/149 (36%), Gaps = 32/149 (21%)

Query: 289 EKDHCCHI--CKKVFLRYRNLVCHIKAVHEKVRDHQCSVCGKAFADITNMKVHMRIHTGE 346
            +   C    C K+F     +  H+     +V  H C+ CGKAF + + +K H  +HTGE
Sbjct: 3   PRTIACPHKGCTKMFRDNSAMRKHLHTHGPRV--HVCAECGKAFVESSKLKRHQLVHTGE 60

Query: 347 KKYVC--ETCGASFVQWGSLNQHNLVHTAVNVVCSYCGNTYKNPKSLESHIRYAHTIRQK 404
           K + C  E CG  F    +L  H  +HT               P        Y       
Sbjct: 61  KPFQCTFEGCGKRFSLDFNLRTHVRIHTG------------DRP--------Y------V 94

Query: 405 SICDVCGKEFKMKKRLKEHMAVHTTDRPF 433
              D C K+F     LK H+  H   +  
Sbjct: 95  CPFDGCNKKFAQSTNLKSHILTHAKAKNN 123

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A* Length = 124

 Score = 57.5 bits (140), Expect = 2e-10
 Identities = 27/90 (30%), Positives = 38/90 (42%), Gaps = 5/90 (5%)

Query: 264 YKCPDCSAILLSYGGFTSHLDIHSGEKDHCCHI--CKKVFLRYRNLVCHIKAVHEKVRDH 321
           + C +C    +       H  +H+GEK   C    C K F    NL  H++ +H   R +
Sbjct: 35  HVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVR-IHTGDRPY 93

Query: 322 QCSV--CGKAFADITNMKVHMRIHTGEKKY 349
            C    C K FA  TN+K H+  H   K  
Sbjct: 94  VCPFDGCNKKFAQSTNLKSHILTHAKAKNN 123

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A* Length = 124

 Score = 45.2 bits (108), Expect = 3e-06
 Identities = 26/114 (22%), Positives = 39/114 (34%), Gaps = 33/114 (28%)

Query: 346 EKKYVC--ETCGASFVQWGSLNQHNLVHTAVNVVCSYCGNTYKNPKSLESHIRYAHTIRQ 403
            +   C  + C   F    ++ +H   H                P+              
Sbjct: 3   PRTIACPHKGCTKMFRDNSAMRKHLHTHG---------------PRVHV----------- 36

Query: 404 KSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDM--CPSAFKLKKHLQQHYKVH 455
              C  CGK F    +LK H  VHT ++PF C    C   F L  +L+ H ++H
Sbjct: 37  ---CAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIH 87

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 95

 Score = 74.1 bits (183), Expect = 1e-16
 Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 3/83 (3%)

Query: 321 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHTAVNV---V 377
             C +CGK F D+ ++  H   H+GEK Y C  CG  F +   ++ H   H        +
Sbjct: 8   VACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYI 67

Query: 378 CSYCGNTYKNPKSLESHIRYAHT 400
           C  CG  +  P  L  HI+  H+
Sbjct: 68  CQSCGKGFSRPDHLNGHIKQVHS 90

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 95

 Score = 73.3 bits (181), Expect = 2e-16
 Identities = 32/90 (35%), Positives = 42/90 (46%), Gaps = 4/90 (4%)

Query: 286 HSGEKDHCCHICKKVFLRYRNLVCHIKAVHEKVRDHQCSVCGKAFADITNMKVHMRIHTG 345
            SG     C IC K+F    +L  H K  H   + + C VCG  F     M  H+R H G
Sbjct: 2   SSGSSGVACEICGKIFRDVYHLNRH-KLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDG 60

Query: 346 E--KKYVCETCGASFVQWGSLNQHN-LVHT 372
              K Y+C++CG  F +   LN H   VH+
Sbjct: 61  SVGKPYICQSCGKGFSRPDHLNGHIKQVHS 90

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 95

 Score = 61.4 bits (150), Expect = 3e-12
 Identities = 31/114 (27%), Positives = 39/114 (34%), Gaps = 32/114 (28%)

Query: 343 HTGEKKYVCETCGASFVQWGSLNQHNLVHTAVNVVCSYCGNT-YKNPKSLESHIRYAHTI 401
            +G     CE CG  F     LN+H L H+         G   Y                
Sbjct: 2   SSGSSGVACEICGKIFRDVYHLNRHKLSHS---------GEKPYS--------------- 37

Query: 402 RQKSICDVCGKEFKMKKRLKEHMAVHT--TDRPFVCDMCPSAFKLKKHLQQHYK 453
                C VCG  FK K R+  H+  H     +P++C  C   F    HL  H K
Sbjct: 38  -----CPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHIK 86

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 95

 Score = 45.2 bits (108), Expect = 2e-06
 Identities = 16/49 (32%), Positives = 26/49 (53%)

Query: 407 CDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVH 455
           C++CGK F+    L  H   H+ ++P+ C +C   FK K  +  H + H
Sbjct: 10  CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSH 58

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 75.7 bits (187), Expect = 2e-16
 Identities = 43/153 (28%), Positives = 66/153 (43%), Gaps = 18/153 (11%)

Query: 264 YKCPDCSAILLSYGGFTSHLD---IHSGEKDHCCHIC-----KKVFLRYRNLVCHIKAVH 315
            +   CS    S      H++   IH   K+  CH        + F     LV H++  H
Sbjct: 4   CRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMR-RH 62

Query: 316 EKVRDHQCSV--CGKAFADITNMKVHMRIHTGEKKYVCE--TCGASFVQWGSLNQH-NLV 370
              + H+C+   C K+++ + N+K H+R HTGEK Y+CE   C  +F       +H N  
Sbjct: 63  TGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRT 122

Query: 371 HTAVN-VVCSY--CGNTYKNPKSLESHIRYAHT 400
           H+     VC    C   Y +P SL  H++    
Sbjct: 123 HSNEKPYVCKLPGCTKRYTDPSSLRKHVK-TVH 154

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 74.9 bits (185), Expect = 3e-16
 Identities = 43/180 (23%), Positives = 66/180 (36%), Gaps = 40/180 (22%)

Query: 289 EKDHCCHICKKVFLRYRNLVCHIKA--VHEKVRDHQCSVCG-----KAFADITNMKVHMR 341
           E D     C + F     LV HI +  +H + ++  C   G     + F     + VHMR
Sbjct: 1   ETDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMR 60

Query: 342 IHTGEKKYVC--ETCGASFVQWGSLNQHNLVHTAVN-VVCSYCGNTYKNPKSLESHIRYA 398
            HTGEK + C  E C  S+ +  +L  H   HT     +C + G                
Sbjct: 61  RHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEG---------------- 104

Query: 399 HTIRQKSICDVCGKEFKMKKRLKEHMA-VHTTDRPFVCDM--CPSAFKLKKHLQQHYKVH 455
                      C K F       +H    H+ ++P+VC +  C   +     L++H K  
Sbjct: 105 -----------CSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTV 153

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 48.4 bits (116), Expect = 4e-07
 Identities = 35/177 (19%), Positives = 60/177 (33%), Gaps = 34/177 (19%)

Query: 180 KCHSCQKCEESFDNCNNLWSHMFIKH---ENSDFVCNLC--PSHSKVLVRYVHSAVRHMK 234
                  C + FD+   L  H+  +H   E  +FVC+        +        A   + 
Sbjct: 2   TDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPF-----KAQYMLV 56

Query: 235 KHHKLQLSIPKAHNYFRKKTVIHVNKKVNYKCP--DCSAILLSYGGFTSHLDIHSGEKDH 292
            H +                  H  +K  +KC    C           +HL  H+GEK +
Sbjct: 57  VHMR-----------------RHTGEK-PHKCTFEGCRKSYSRLENLKTHLRSHTGEKPY 98

Query: 293 CCH--ICKKVFLRYRNLVCHIKAVHEKVRDHQCSV--CGKAFADITNMKVHMRIHTG 345
            C    C K F    +   H    H   + + C +  C K + D ++++ H++   G
Sbjct: 99  MCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVHG 155

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 110

 Score = 74.0 bits (183), Expect = 2e-16
 Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 4/88 (4%)

Query: 285 IHSGEKDHCCHICKKVFLRYRNLVCHIKAVHEKVRDHQCSVCGKAFADITNMKVHMRIHT 344
             SG+K + C  C K F        H+  +H  +R + C VCGK F    ++  HM+IHT
Sbjct: 4   GSSGDKLYPCQ-CGKSFTHKSQRDRHMS-MHLGLRPYGCGVCGKKFKMKHHLVGHMKIHT 61

Query: 345 GEKKYVCETCGASFVQWGSLNQHNLVHT 372
           G K Y C  C   F+   S ++H  V +
Sbjct: 62  GIKPYECNICAKRFMWRDSFHRH--VTS 87

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 110

 Score = 67.1 bits (165), Expect = 4e-14
 Identities = 19/86 (22%), Positives = 39/86 (45%), Gaps = 3/86 (3%)

Query: 280 TSHLDIHSGEKDHCCHICKKVFLRYRNLVCHIKAVHEKVRDHQCSVCGKAFADITNMKVH 339
             H+ +H G + + C +C K F    +LV H+K +H  ++ ++C++C K F    +   H
Sbjct: 26  DRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMK-IHTGIKPYECNICAKRFMWRDSF--H 82

Query: 340 MRIHTGEKKYVCETCGASFVQWGSLN 365
             + +  K Y       +  +    +
Sbjct: 83  RHVTSCTKSYEAAKAEQNTTEASGPS 108

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 110

 Score = 61.7 bits (151), Expect = 4e-12
 Identities = 24/110 (21%), Positives = 41/110 (37%), Gaps = 5/110 (4%)

Query: 340 MRIHTGEKKYVCETCGASFVQWGSLNQHNLVHTAVN-VVCSYCGNTYKNPKSLESHIRYA 398
               +G+K Y C+ CG SF      ++H  +H  +    C  CG  +K    L  H++  
Sbjct: 2   SSGSSGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMK-I 59

Query: 399 HTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMCPSAFKLKKHL 448
           HT  +   C++C K F  +     H  V +  + +               
Sbjct: 60  HTGIKPYECNICAKRFMWRDSF--HRHVTSCTKSYEAAKAEQNTTEASGP 107

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 110

 Score = 44.7 bits (107), Expect = 4e-06
 Identities = 20/46 (43%), Positives = 27/46 (58%)

Query: 410 CGKEFKMKKRLKEHMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVH 455
           CGK F  K +   HM++H   RP+ C +C   FK+K HL  H K+H
Sbjct: 15  CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH 60

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 86

 Score = 71.4 bits (176), Expect = 9e-16
 Identities = 25/86 (29%), Positives = 30/86 (34%), Gaps = 5/86 (5%)

Query: 277 GGFTSHLDIHSGEKDHCCHICKKVFLRYRNLVCHIKAVH----EKVRDHQCSVCGKAFAD 332
           G   S    H+GEK + C  C K F + + L  H K  +           CS CGK F  
Sbjct: 1   GSSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFK-RYHDPNFVPAAFVCSKCGKTFTR 59

Query: 333 ITNMKVHMRIHTGEKKYVCETCGASF 358
              M  H     G      E  G S 
Sbjct: 60  RNTMARHADNCAGPDGVEGENSGPSS 85

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 86

 Score = 63.7 bits (156), Expect = 5e-13
 Identities = 20/108 (18%), Positives = 29/108 (26%), Gaps = 24/108 (22%)

Query: 335 NMKVHMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHTAVNVVCSYCGNTYKNPKSLESH 394
           +     R HTGEK Y C  C  +F Q   L+ H   +                P +    
Sbjct: 2   SSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHD----------PNFVPAAFV-- 49

Query: 395 IRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMCPSAF 442
                       C  CGK F  +  +  H            +    + 
Sbjct: 50  ------------CSKCGKTFTRRNTMARHADNCAGPDGVEGENSGPSS 85

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 86

 Score = 41.7 bits (99), Expect = 2e-05
 Identities = 13/53 (24%), Positives = 19/53 (35%), Gaps = 4/53 (7%)

Query: 407 CDVCGKEFKMKKRLKEHMAVHT----TDRPFVCDMCPSAFKLKKHLQQHYKVH 455
           C  C K F+ K+ L  H   +         FVC  C   F  +  + +H    
Sbjct: 18  CSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNC 70

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A Length = 88

 Score = 71.0 bits (175), Expect = 1e-15
 Identities = 18/83 (21%), Positives = 36/83 (43%)

Query: 318 VRDHQCSVCGKAFADITNMKVHMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHTAVNVV 377
           ++  QC +C + F+   ++  H+R HTGEK + C+ CG  F +     +H  +   + ++
Sbjct: 1   MKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHILPIL 60

Query: 378 CSYCGNTYKNPKSLESHIRYAHT 400
                        LE+ +     
Sbjct: 61  EDKVEELLSKNYHLENEVARLKK 83

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A Length = 88

 Score = 56.0 bits (136), Expect = 2e-10
 Identities = 18/87 (20%), Positives = 29/87 (33%), Gaps = 5/87 (5%)

Query: 264 YKCPDCSAILLSYGGFTSHLDIHSGEKDHCCHICKKVFLRYRNLVCHIKAVHEKVRDHQC 323
           ++C  C          T+H+  H+GEK   C IC + F R      H    H        
Sbjct: 4   FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHIL--PILE 61

Query: 324 SVCGKAF---ADITNMKVHMRIHTGEK 347
               +       + N    ++   GE+
Sbjct: 62  DKVEELLSKNYHLENEVARLKKLVGER 88

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A Length = 88

 Score = 44.4 bits (106), Expect = 3e-06
 Identities = 14/52 (26%), Positives = 23/52 (44%)

Query: 407 CDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVHLKK 458
           C +C + F     L  H+  HT ++PF CD+C   F      ++H  +    
Sbjct: 6   CRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHIL 57

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A Length = 88

 Score = 44.0 bits (105), Expect = 3e-06
 Identities = 20/106 (18%), Positives = 30/106 (28%), Gaps = 31/106 (29%)

Query: 347 KKYVCETCGASFVQWGSLNQHNLVHTAVNVVCSYCGNT-YKNPKSLESHIRYAHTIRQKS 405
           K + C  C  +F +   L  H   HT         G   +                    
Sbjct: 2   KPFQCRICMRNFSRSDHLTTHIRTHT---------GEKPFA------------------- 33

Query: 406 ICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMCPSAFKLKKHLQQH 451
            CD+CG++F      K H  +     P + D          HL+  
Sbjct: 34  -CDICGRKFARSDERKRHRDIQH-ILPILEDKVEELLSKNYHLENE 77

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus} Length = 82

 Score = 69.4 bits (171), Expect = 4e-15
 Identities = 33/79 (41%), Positives = 42/79 (53%), Gaps = 1/79 (1%)

Query: 294 CHICKKVFLRYRNLVCHIKAVHEKVRDHQCSVCGKAFADITNMKVHMRIHTGEKKYVCET 353
           C IC K F R   L  H   +H   R + C  CGK F   ++MK H  IHTGEK + C+ 
Sbjct: 4   CKICGKSFKRSSTLSTH-LLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQV 62

Query: 354 CGASFVQWGSLNQHNLVHT 372
           CG +F Q  +L  H+  HT
Sbjct: 63  CGKAFSQSSNLITHSRKHT 81

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus} Length = 82

 Score = 62.8 bits (154), Expect = 7e-13
 Identities = 29/108 (26%), Positives = 41/108 (37%), Gaps = 30/108 (27%)

Query: 322 QCSVCGKAFADITNMKVHMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHTAVNVVCSYC 381
            C +CGK+F   + +  H+ IH+  + Y C+ CG  F Q   + +H  +HT         
Sbjct: 3   DCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHT--------- 53

Query: 382 G-NTYKNPKSLESHIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHT 428
           G   +K                    C VCGK F     L  H   HT
Sbjct: 54  GEKPHK--------------------CQVCGKAFSQSSNLITHSRKHT 81

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus} Length = 82

 Score = 55.9 bits (136), Expect = 2e-10
 Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 1/82 (1%)

Query: 264 YKCPDCSAILLSYGGFTSHLDIHSGEKDHCCHICKKVFLRYRNLVCHIKAVHEKVRDHQC 323
           + C  C          ++HL IHS  + + C  C K F +  ++  H   +H   + H+C
Sbjct: 2   FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKH-TFIHTGEKPHKC 60

Query: 324 SVCGKAFADITNMKVHMRIHTG 345
            VCGKAF+  +N+  H R HTG
Sbjct: 61  QVCGKAFSQSSNLITHSRKHTG 82

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus} Length = 82

 Score = 47.4 bits (114), Expect = 2e-07
 Identities = 28/108 (25%), Positives = 43/108 (39%), Gaps = 30/108 (27%)

Query: 349 YVCETCGASFVQWGSLNQHNLVHTAVNVVCSYCGNT-YKNPKSLESHIRYAHTIRQKSIC 407
           + C+ CG SF +  +L+ H L+H+             Y                     C
Sbjct: 2   FDCKICGKSFKRSSTLSTHLLIHS---------DTRPYP--------------------C 32

Query: 408 DVCGKEFKMKKRLKEHMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVH 455
             CGK F  K  +K+H  +HT ++P  C +C  AF    +L  H + H
Sbjct: 33  QYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSRKH 80

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C Length = 90

 Score = 69.4 bits (171), Expect = 4e-15
 Identities = 25/86 (29%), Positives = 45/86 (52%), Gaps = 3/86 (3%)

Query: 289 EKDHCCHI--CKKVFLRYRNLVCHIKAVHEKVRDHQCSVCGKAFADITNMKVHMRIHTGE 346
           E+ + C +  C + F +  +L  HI+ +H   +  QC +C + F+   ++  H+R HTGE
Sbjct: 2   ERPYACPVESCDRRFSQSGSLTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60

Query: 347 KKYVCETCGASFVQWGSLNQHNLVHT 372
           K + C+ CG  F +     +H  +H 
Sbjct: 61  KPFACDICGRKFARSDERKRHTKIHL 86

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C Length = 90

 Score = 60.6 bits (148), Expect = 7e-12
 Identities = 30/86 (34%), Positives = 41/86 (47%), Gaps = 3/86 (3%)

Query: 264 YKCP--DCSAILLSYGGFTSHLDIHSGEKDHCCHICKKVFLRYRNLVCHIKAVHEKVRDH 321
           Y CP   C       G  T H+ IH+G+K   C IC + F R  +L  HI+  H   +  
Sbjct: 5   YACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR-THTGEKPF 63

Query: 322 QCSVCGKAFADITNMKVHMRIHTGEK 347
            C +CG+ FA     K H +IH  +K
Sbjct: 64  ACDICGRKFARSDERKRHTKIHLRQK 89

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C Length = 90

 Score = 50.2 bits (121), Expect = 3e-08
 Identities = 29/112 (25%), Positives = 44/112 (39%), Gaps = 30/112 (26%)

Query: 346 EKKYVC--ETCGASFVQWGSLNQHNLVHTAVNVVCSYCGNTYKNPKSLESHIRYAHTIRQ 403
           E+ Y C  E+C   F Q GSL +H  +HT            ++                 
Sbjct: 2   ERPYACPVESCDRRFSQSGSLTRHIRIHTGQK--------PFQ----------------- 36

Query: 404 KSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVH 455
              C +C + F     L  H+  HT ++PF CD+C   F      ++H K+H
Sbjct: 37  ---CRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 79

 Score = 68.0 bits (167), Expect = 1e-14
 Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 4/77 (5%)

Query: 286 HSGEKDHCCHI--CKKVFLRYRNLVCHIKAVHEKVRDHQCS--VCGKAFADITNMKVHMR 341
            SG     C    C ++F   + L  H K  H   +   C    CGK+F    ++K HM+
Sbjct: 2   SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMK 61

Query: 342 IHTGEKKYVCETCGASF 358
           +H+  + Y+CE  G S 
Sbjct: 62  LHSDTRDYICEFSGPSS 78

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 79

 Score = 52.2 bits (126), Expect = 5e-09
 Identities = 25/102 (24%), Positives = 38/102 (37%), Gaps = 27/102 (26%)

Query: 343 HTGEKKYVCETCGASFVQWGSLNQHNLVHTAVNVVCSYCGNTYKNPKSLESHIRYAHTIR 402
            +G     C+  G                         CG  + N + L  H +Y H  +
Sbjct: 2   SSGSSGMPCDFPG-------------------------CGRIFSNRQYLNHHKKYQHIHQ 36

Query: 403 QKSICD--VCGKEFKMKKRLKEHMAVHTTDRPFVCDMCPSAF 442
           +   C    CGK F  KK LKEHM +H+  R ++C+    + 
Sbjct: 37  KSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFSGPSS 78

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 79

 Score = 40.6 bits (96), Expect = 4e-05
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 3/49 (6%)

Query: 410 CGKEFKMKKRLKEHM-AVHTTDRPFVCD--MCPSAFKLKKHLQQHYKVH 455
           CG+ F  ++ L  H    H   + F C    C  +F  KKHL++H K+H
Sbjct: 15  CGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLH 63

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 67.2 bits (165), Expect = 2e-14
 Identities = 22/69 (31%), Positives = 29/69 (42%), Gaps = 3/69 (4%)

Query: 335 NMKVHMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHTAVNV---VCSYCGNTYKNPKSL 391
           +     R H+GEK Y C  C A F Q G++  H L     NV    C +C         L
Sbjct: 2   SSGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDL 61

Query: 392 ESHIRYAHT 400
             H+R  H+
Sbjct: 62  GVHLRKQHS 70

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 63.7 bits (156), Expect = 4e-13
 Identities = 22/76 (28%), Positives = 31/76 (40%), Gaps = 4/76 (5%)

Query: 277 GGFTSHLDIHSGEKDHCCHICKKVFLRYRNLVCHIKAVH--EKVRDHQCSVCGKAFADIT 334
           G   S    HSGEK + C+IC   F +   +  HI      E V    C  C    A  +
Sbjct: 1   GSSGSSGRTHSGEKPYECYICHARFTQSGTMKMHIL-QKHTENVAKFHCPHCDTVIARKS 59

Query: 335 NMKVHMR-IHTGEKKY 349
           ++ VH+R  H+     
Sbjct: 60  DLGVHLRKQHSYSGPS 75

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 61.4 bits (150), Expect = 2e-12
 Identities = 13/55 (23%), Positives = 21/55 (38%), Gaps = 3/55 (5%)

Query: 321 HQCSVCGKAFADITNMKVHMRIHTGE--KKYVCETCGASFVQWGSLNQHN-LVHT 372
           ++C +C   F     MK+H+     E   K+ C  C     +   L  H    H+
Sbjct: 16  YECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHS 70

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 44.0 bits (105), Expect = 3e-06
 Identities = 15/64 (23%), Positives = 21/64 (32%), Gaps = 3/64 (4%)

Query: 390 SLESHIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHT--TDRPFVCDMCPSAFKLKKH 447
           S  S  R  H+  +   C +C   F     +K H+          F C  C +    K  
Sbjct: 2   SSGSSGR-THSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSD 60

Query: 448 LQQH 451
           L  H
Sbjct: 61  LGVH 64

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 70

 Score = 65.6 bits (161), Expect = 7e-14
 Identities = 12/50 (24%), Positives = 23/50 (46%)

Query: 323 CSVCGKAFADITNMKVHMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
           CS C  + +    +++H RIH  ++ + C  C     Q  +L++H     
Sbjct: 12  CSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFH 61

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 70

 Score = 53.3 bits (129), Expect = 1e-09
 Identities = 13/64 (20%), Positives = 21/64 (32%), Gaps = 1/64 (1%)

Query: 286 HSGEKDHCCHICKKVFLRYRNLVCHIKAVHEKVRDHQCSVCGKAFADITNMKVHMRIHTG 345
            S      C  C         L  H + +H   R  +C+ C       +N+  HM+   G
Sbjct: 4   GSSGHPEKCSECSYSCSSKAALRIH-ERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHG 62

Query: 346 EKKY 349
           +   
Sbjct: 63  DMSG 66

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 70

 Score = 50.2 bits (121), Expect = 2e-08
 Identities = 17/49 (34%), Positives = 22/49 (44%)

Query: 407 CDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVH 455
           C  C      K  L+ H  +H TDRPF C+ C    K   +L +H K  
Sbjct: 12  CSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKF 60

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 70

 Score = 47.1 bits (113), Expect = 2e-07
 Identities = 13/88 (14%), Positives = 20/88 (22%), Gaps = 28/88 (31%)

Query: 341 RIHTGEKKYVCETCGASFVQWGSLNQHNLVHTAVNVVCSYCGNTYKNPKSLESHIRYAHT 400
              +      C  C  S     +L  H  +H             +K              
Sbjct: 2   SSGSSGHPEKCSECSYSCSSKAALRIHERIHCTD--------RPFK-------------- 39

Query: 401 IRQKSICDVCGKEFKMKKRLKEHMAVHT 428
                 C+ C  + K    L +HM    
Sbjct: 40  ------CNYCSFDTKQPSNLSKHMKKFH 61

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 65.5 bits (160), Expect = 8e-14
 Identities = 14/54 (25%), Positives = 21/54 (38%), Gaps = 3/54 (5%)

Query: 321 HQCSVCGKAFADITNMKVHMRIHT---GEKKYVCETCGASFVQWGSLNQHNLVH 371
            QC +CG       ++  H R H       ++ CE CG  F +  S+  H    
Sbjct: 8   LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKS 61

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 56.3 bits (136), Expect = 1e-10
 Identities = 17/98 (17%), Positives = 24/98 (24%), Gaps = 25/98 (25%)

Query: 343 HTGEKKYVCETCGASFVQWGSLNQHNLVHTAVNVVCSYCGNTYKNPKSLESHIRYAHTIR 402
            +G     CE CG +  Q  SLN H   H        +                      
Sbjct: 2   SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRF---------------------- 39

Query: 403 QKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMCPS 440
               C+ CGK F+    +  H +               
Sbjct: 40  ---PCEFCGKRFEKPDSVAAHRSKSHPALLLAPQESSG 74

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 53.2 bits (128), Expect = 2e-09
 Identities = 14/71 (19%), Positives = 20/71 (28%), Gaps = 2/71 (2%)

Query: 286 HSGEKDHCCHICKKVFLRYRNLVCHIK--AVHEKVRDHQCSVCGKAFADITNMKVHMRIH 343
            SG     C IC     +  +L  H +  A         C  CGK F    ++  H    
Sbjct: 2   SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKS 61

Query: 344 TGEKKYVCETC 354
                   +  
Sbjct: 62  HPALLLAPQES 72

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 52.0 bits (125), Expect = 4e-09
 Identities = 12/52 (23%), Positives = 18/52 (34%), Gaps = 3/52 (5%)

Query: 407 CDVCGKEFKMKKRLKEHMAVHTT---DRPFVCDMCPSAFKLKKHLQQHYKVH 455
           C++CG   + K  L  H   H        F C+ C   F+    +  H    
Sbjct: 10  CEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKS 61

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Length = 74

 Score = 64.0 bits (157), Expect = 2e-13
 Identities = 19/52 (36%), Positives = 28/52 (53%)

Query: 321 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
           ++C  C  +F    N+  H  +HTGEK Y C  CGA F +  +L  H  +H+
Sbjct: 18  YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHS 69

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Length = 74

 Score = 60.5 bits (148), Expect = 5e-12
 Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 1/70 (1%)

Query: 280 TSHLDIHSGEKDHCCHICKKVFLRYRNLVCHIKAVHEKVRDHQCSVCGKAFADITNMKVH 339
             H  +   +K + C  C+  F    NL  H K VH   + ++C++CG  F    N+K H
Sbjct: 6   HHHSHMTHSDKPYKCDRCQASFRYKGNLASH-KTVHTGEKPYRCNICGAQFNRPANLKTH 64

Query: 340 MRIHTGEKKY 349
            RIH+GEK Y
Sbjct: 65  TRIHSGEKPY 74

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Length = 74

 Score = 53.6 bits (130), Expect = 1e-09
 Identities = 24/99 (24%), Positives = 38/99 (38%), Gaps = 28/99 (28%)

Query: 335 NMKVHMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHTAVNVVCSYCGNTYKNPKSLESH 394
           +   H  +   +K Y C+ C ASF   G+L  H  VHT            Y+        
Sbjct: 4   HHHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEK--------PYR-------- 47

Query: 395 IRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPF 433
                       C++CG +F     LK H  +H+ ++P+
Sbjct: 48  ------------CNICGAQFNRPANLKTHTRIHSGEKPY 74

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Length = 74

 Score = 44.8 bits (107), Expect = 1e-06
 Identities = 17/49 (34%), Positives = 28/49 (57%)

Query: 407 CDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVH 455
           CD C   F+ K  L  H  VHT ++P+ C++C + F    +L+ H ++H
Sbjct: 20  CDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIH 68

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens} Length = 100

 Score = 64.6 bits (158), Expect = 3e-13
 Identities = 27/100 (27%), Positives = 40/100 (40%), Gaps = 5/100 (5%)

Query: 277 GGFTSHLDIHSGEKDHCCHI--CKKVFLRYRNLVCHIKAVHEKVRDHQCSV--CGKAFAD 332
           G   S        + H C    C KV+ +  +L  H++  H   + ++C+   C   FA 
Sbjct: 1   GSSGSSGPDLEKRRIHYCDYPGCTKVYTKSSHLKAHLR-THTGEKPYKCTWEGCDWRFAR 59

Query: 333 ITNMKVHMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
              +  H R HTG K + C  C  SF +   L  H   H 
Sbjct: 60  SDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRHQ 99

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens} Length = 100

 Score = 56.5 bits (137), Expect = 2e-10
 Identities = 32/118 (27%), Positives = 41/118 (34%), Gaps = 32/118 (27%)

Query: 315 HEKVRDHQCSV--CGKAFADITNMKVHMRIHTGEKKYVC--ETCGASFVQWGSLNQHNLV 370
            EK R H C    C K +   +++K H+R HTGEK Y C  E C   F +   L +H   
Sbjct: 10  LEKRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRK 69

Query: 371 HTAVNVVCSYCGNTYKNPKSLESHIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHT 428
           HT                        +         C VC + F     L  HM  H 
Sbjct: 70  HT--------------------GAKPFQ--------CGVCNRSFSRSDHLALHMKRHQ 99

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 72

 Score = 62.1 bits (152), Expect = 1e-12
 Identities = 28/72 (38%), Positives = 37/72 (51%), Gaps = 1/72 (1%)

Query: 278 GFTSHLDIHSGEKDHCCHICKKVFLRYRNLVCHIKAVHEKVRDHQCSVCGKAFADITNMK 337
           G +    IHSGEK + C  C K F R   LV H + VH   + ++C  CGKAF+  + + 
Sbjct: 1   GSSGSSGIHSGEKPYGCVECGKAFSRSSILVQH-QRVHTGEKPYKCLECGKAFSQNSGLI 59

Query: 338 VHMRIHTGEKKY 349
            H RIHT     
Sbjct: 60  NHQRIHTSGPSS 71

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 72

 Score = 61.3 bits (150), Expect = 2e-12
 Identities = 23/52 (44%), Positives = 30/52 (57%)

Query: 321 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
           + C  CGKAF+  + +  H R+HTGEK Y C  CG +F Q   L  H  +HT
Sbjct: 15  YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHT 66

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 72

 Score = 49.8 bits (120), Expect = 2e-08
 Identities = 28/96 (29%), Positives = 33/96 (34%), Gaps = 30/96 (31%)

Query: 339 HMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHTAVNVVCSYCGNT-YKNPKSLESHIRY 397
              IH+GEK Y C  CG +F +   L QH  VHT         G   YK           
Sbjct: 5   SSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHT---------GEKPYK----------- 44

Query: 398 AHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPF 433
                    C  CGK F     L  H  +HT+    
Sbjct: 45  ---------CLECGKAFSQNSGLINHQRIHTSGPSS 71

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 72

 Score = 43.6 bits (104), Expect = 3e-06
 Identities = 18/49 (36%), Positives = 24/49 (48%)

Query: 407 CDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVH 455
           C  CGK F     L +H  VHT ++P+ C  C  AF     L  H ++H
Sbjct: 17  CVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 61.7 bits (151), Expect = 2e-12
 Identities = 23/52 (44%), Positives = 34/52 (65%)

Query: 321 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
           ++C  CGK+F+  +++  H R HTGEK Y C+ CG +F+Q   L  H+ VHT
Sbjct: 19  YKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHT 70

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 57.8 bits (141), Expect = 4e-11
 Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 1/70 (1%)

Query: 280 TSHLDIHSGEKDHCCHICKKVFLRYRNLVCHIKAVHEKVRDHQCSVCGKAFADITNMKVH 339
                     + + C  C K F    +L  H +  H   + ++C  CGKAF   +++  H
Sbjct: 7   GRSEWQQRERRRYKCDECGKSFSHSSDLSKH-RRTHTGEKPYKCDECGKAFIQRSHLIGH 65

Query: 340 MRIHTGEKKY 349
            R+HTG    
Sbjct: 66  HRVHTGSGPS 75

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 49.4 bits (119), Expect = 4e-08
 Identities = 25/100 (25%), Positives = 32/100 (32%), Gaps = 30/100 (30%)

Query: 335 NMKVHMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHTAVNVVCSYCGNT-YKNPKSLES 393
           +           ++Y C+ CG SF     L++H   HT         G   YK       
Sbjct: 5   SSGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHT---------GEKPYK------- 48

Query: 394 HIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPF 433
                        CD CGK F  +  L  H  VHT   P 
Sbjct: 49  -------------CDECGKAFIQRSHLIGHHRVHTGSGPS 75

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 43.6 bits (104), Expect = 4e-06
 Identities = 21/49 (42%), Positives = 28/49 (57%)

Query: 407 CDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVH 455
           CD CGK F     L +H   HT ++P+ CD C  AF  + HL  H++VH
Sbjct: 21  CDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVH 69

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A Length = 89

 Score = 61.0 bits (149), Expect = 4e-12
 Identities = 21/88 (23%), Positives = 35/88 (39%), Gaps = 3/88 (3%)

Query: 286 HSGEKDHCCHICKKVFLRYRNLVCHIKAVHEKVRDHQCSV--CGKAFADITNMKVHMRIH 343
            +         C K + +  +L  H++  H   + + C    CG  FA    +  H R H
Sbjct: 2   RTATHTCDYAGCGKTYTKSSHLKAHLR-THTGEKPYHCDWDGCGWKFARSDELTRHYRKH 60

Query: 344 TGEKKYVCETCGASFVQWGSLNQHNLVH 371
           TG + + C+ C  +F +   L  H   H
Sbjct: 61  TGHRPFQCQKCDRAFSRSDHLALHMKRH 88

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A Length = 89

 Score = 55.6 bits (135), Expect = 4e-10
 Identities = 33/142 (23%), Positives = 41/142 (28%), Gaps = 54/142 (38%)

Query: 315 HEKVRDHQCSVCGKAFADITNMKVHMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHTAV 374
                    + CGK +   +++K H+R HTGEK Y                         
Sbjct: 2   RTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYH------------------------ 37

Query: 375 NVVCSYCGNTYKNPKSLESHIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFV 434
              C + G                           CG +F     L  H   HT  RPF 
Sbjct: 38  ---CDWDG---------------------------CGWKFARSDELTRHYRKHTGHRPFQ 67

Query: 435 CDMCPSAFKLKKHLQQHYKVHL 456
           C  C  AF    HL  H K H 
Sbjct: 68  CQKCDRAFSRSDHLALHMKRHF 89

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1 Length = 60

 Score = 57.9 bits (141), Expect = 2e-11
 Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 1/53 (1%)

Query: 321 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCETCGASFVQWGSLNQHNL-VHT 372
             C VC +AFA   ++K H R HT EK Y C  C  +F +   L +H   +H+
Sbjct: 3   FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHS 55

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1 Length = 60

 Score = 42.5 bits (101), Expect = 6e-06
 Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 1/50 (2%)

Query: 407 CDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMCPSAFKLKKHLQQHY-KVH 455
           C+VC + F  ++ LK H   HT ++P+ C +C  AF  +  L +H  K+H
Sbjct: 5   CEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIH 54

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1 Length = 60

 Score = 42.1 bits (100), Expect = 8e-06
 Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 2/59 (3%)

Query: 290 KDHCCHICKKVFLRYRNLVCHIKAVHEKVRDHQCSVCGKAFADITNMKVHM-RIHTGEK 347
           +   C +C + F R  +L  H +  H   + + C +C +AF     +  H  +IH+G  
Sbjct: 1   RSFVCEVCTRAFARQEHLKRHYR-SHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGNL 58

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1 Length = 66

 Score = 57.2 bits (139), Expect = 6e-11
 Identities = 13/66 (19%), Positives = 25/66 (37%), Gaps = 2/66 (3%)

Query: 311 IKAVHEKVRDHQCSVCGKAFADITNMKVHMRI--HTGEKKYVCETCGASFVQWGSLNQHN 368
           ++   E    ++C VC + +  I+N   H         K Y C  C   F +  ++  H 
Sbjct: 1   MEFTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHV 60

Query: 369 LVHTAV 374
            +   +
Sbjct: 61  KIIHKI 66

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1 Length = 66

 Score = 54.9 bits (133), Expect = 4e-10
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 1/62 (1%)

Query: 285 IHSGEKDHCCHICKKVFLRYRNLVCHIK-AVHEKVRDHQCSVCGKAFADITNMKVHMRIH 343
              GE  + C +C +V+    N   H   +    V+ + C  C K F    NM  H++I 
Sbjct: 4   TKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKII 63

Query: 344 TG 345
             
Sbjct: 64  HK 65

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1 Length = 66

 Score = 45.2 bits (108), Expect = 8e-07
 Identities = 10/51 (19%), Positives = 18/51 (35%), Gaps = 2/51 (3%)

Query: 407 CDVCGKEFKMKKRLKEHM--AVHTTDRPFVCDMCPSAFKLKKHLQQHYKVH 455
           C VC + +        H   +     + + C  C   F  K ++  H K+ 
Sbjct: 13  CKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKII 63

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1 Length = 66

 Score = 44.9 bits (107), Expect = 1e-06
 Identities = 13/64 (20%), Positives = 25/64 (39%), Gaps = 3/64 (4%)

Query: 341 RIHTGEKKYVCETCGASFVQWGSLNQHNLVHTAVNV---VCSYCGNTYKNPKSLESHIRY 397
               GE  Y C+ C   +    +  +H +     NV    C +C   +    ++ +H++ 
Sbjct: 3   FTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKI 62

Query: 398 AHTI 401
            H I
Sbjct: 63  IHKI 66

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 115

 Score = 57.9 bits (139), Expect = 1e-10
 Identities = 19/97 (19%), Positives = 31/97 (31%), Gaps = 5/97 (5%)

Query: 334 TNMKVHMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHTAVNVVCSYCGNTYKNPKSLES 393
           ++ K++  I TG  K+ C+ C A++     L  H               N      S   
Sbjct: 5   SSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPR 64

Query: 394 HIRY-----AHTIRQKSICDVCGKEFKMKKRLKEHMA 425
                        ++   C  CG  F+  + L  HM 
Sbjct: 65  KRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMI 101

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 115

 Score = 47.8 bits (113), Expect = 4e-07
 Identities = 15/92 (16%), Positives = 25/92 (27%), Gaps = 4/92 (4%)

Query: 280 TSHLDIHSGEKDHCCHICKKVFLRYRNLVCHIKAVHEKVRD----HQCSVCGKAFADITN 335
             +  I +G     C  C   +     L  H+        D       +    +     +
Sbjct: 8   KLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRS 67

Query: 336 MKVHMRIHTGEKKYVCETCGASFVQWGSLNQH 367
           +         +K   C  CG SF     L+ H
Sbjct: 68  LLEMEGKEDAQKVLKCMYCGHSFESLQDLSVH 99

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 95

 Score = 53.8 bits (129), Expect = 2e-09
 Identities = 18/75 (24%), Positives = 26/75 (34%), Gaps = 8/75 (10%)

Query: 285 IHSGEKDHCCHICKKVFLRYRNLVCHIKAVHEKVRDHQ--------CSVCGKAFADITNM 336
           I   +       C + F     LV H+   H    +          C   GK+F     +
Sbjct: 19  IDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKL 78

Query: 337 KVHMRIHTGEKKYVC 351
             H+R+HTGEK    
Sbjct: 79  VNHIRVHTGEKSGPS 93

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 95

 Score = 42.3 bits (99), Expect = 2e-05
 Identities = 17/66 (25%), Positives = 25/66 (37%), Gaps = 8/66 (12%)

Query: 378 CSYCGNTYKNPKSLESHIRYAHTIRQKSICDVC--------GKEFKMKKRLKEHMAVHTT 429
              C  T+     L +H+   H    +    VC        GK FK K +L  H+ VHT 
Sbjct: 28  KKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTG 87

Query: 430 DRPFVC 435
           ++    
Sbjct: 88  EKSGPS 93

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A Length = 85

 Score = 52.2 bits (126), Expect = 5e-09
 Identities = 24/84 (28%), Positives = 29/84 (34%), Gaps = 5/84 (5%)

Query: 321 HQCSV--CGKAFADITNMKVHMRIHTGEKKYVC--ETCGASFVQWGSLNQHNLVHTAVNV 376
           + C    CGKAF     +KVH   HT +  Y C  E C   F     L +H  VH     
Sbjct: 2   YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPC 61

Query: 377 -VCSYCGNTYKNPKSLESHIRYAH 399
                C    K       H+   H
Sbjct: 62  KKDDSCSFVGKTWTLYLKHVAECH 85

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A Length = 85

 Score = 51.5 bits (124), Expect = 7e-09
 Identities = 17/73 (23%), Positives = 30/73 (41%), Gaps = 3/73 (4%)

Query: 297 CKKVFLRYRNLVCHIKAVHEKVRDHQCSV--CGKAFADITNMKVHMRIHTGEKKYVCETC 354
           C K F ++  L  H    H +   ++C    C K F+  + +K H ++H G      ++C
Sbjct: 9   CGKAFKKHNQLKVHQF-SHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSC 67

Query: 355 GASFVQWGSLNQH 367
                 W    +H
Sbjct: 68  SFVGKTWTLYLKH 80

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 42

 Score = 50.2 bits (121), Expect = 7e-09
 Identities = 11/29 (37%), Positives = 16/29 (55%)

Query: 321 HQCSVCGKAFADITNMKVHMRIHTGEKKY 349
           + C +CG  F  +  +K H+RIHTG    
Sbjct: 12  YPCEICGTRFRHLQTLKSHLRIHTGSGPS 40

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 42

 Score = 48.6 bits (117), Expect = 3e-08
 Identities = 13/34 (38%), Positives = 15/34 (44%)

Query: 339 HMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
                 GEK Y CE CG  F    +L  H  +HT
Sbjct: 2   SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHT 35

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 42

 Score = 50.2 bits (121), Expect = 9e-09
 Identities = 18/34 (52%), Positives = 19/34 (55%)

Query: 339 HMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
                 GEK Y CETCGA FVQ   L  H L+HT
Sbjct: 2   SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHT 35

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 42

 Score = 44.8 bits (107), Expect = 6e-07
 Identities = 9/29 (31%), Positives = 16/29 (55%)

Query: 321 HQCSVCGKAFADITNMKVHMRIHTGEKKY 349
           ++C  CG  F  + +++ H+ IHTG    
Sbjct: 12  YKCETCGARFVQVAHLRAHVLIHTGSGPS 40

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 Length = 73

 Score = 51.2 bits (123), Expect = 9e-09
 Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 5/72 (6%)

Query: 303 RYRNLVCHIKAVHEKVRDHQCSV--CGKAFADITNMKVHMRIHTGEKKYVCETCGASFVQ 360
              NL+ ++     +   + C V  C + F+    +  H+RIHTG+K + C  C  +F +
Sbjct: 5   PMNNLLNYVV-PKMR--PYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSR 61

Query: 361 WGSLNQHNLVHT 372
              L  H   HT
Sbjct: 62  SDHLTTHIRTHT 73

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 Length = 73

 Score = 42.7 bits (101), Expect = 8e-06
 Identities = 15/46 (32%), Positives = 21/46 (45%)

Query: 410 CGKEFKMKKRLKEHMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVH 455
           C + F     L  H+ +HT  +PF C +C   F    HL  H + H
Sbjct: 27  CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 Length = 54

 Score = 49.9 bits (120), Expect = 1e-08
 Identities = 10/49 (20%), Positives = 23/49 (46%), Gaps = 1/49 (2%)

Query: 311 IKAVHEKVRDHQCSVCGKAFADITNMKVHM-RIHTGEKKYVCETCGASF 358
             +     + + C  CGK F+   ++  H+ ++HT E+ + C+   +  
Sbjct: 3   SGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGP 51

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 Length = 54

 Score = 47.6 bits (114), Expect = 9e-08
 Identities = 18/52 (34%), Positives = 22/52 (42%)

Query: 281 SHLDIHSGEKDHCCHICKKVFLRYRNLVCHIKAVHEKVRDHQCSVCGKAFAD 332
           S     S  K + C  C K F R  +L  HIK VH   R H+C V     + 
Sbjct: 2   SSGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS 53

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 Length = 54

 Score = 39.5 bits (93), Expect = 6e-05
 Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 1/37 (2%)

Query: 407 CDVCGKEFKMKKRLKEHM-AVHTTDRPFVCDMCPSAF 442
           C  CGK F     L  H+  VHT++RP  C +  S  
Sbjct: 15  CQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGP 51

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 Length = 54

 Score = 37.6 bits (88), Expect = 3e-04
 Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 1/35 (2%)

Query: 339 HMRIHTGEKKYVCETCGASFVQWGSLNQHN-LVHT 372
                +  K Y+C++CG  F +   LN H   VHT
Sbjct: 3   SGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHT 37

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens} Length = 72

 Score = 50.5 bits (121), Expect = 2e-08
 Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 4/61 (6%)

Query: 315 HEKVRDHQCSV--CGKAFADITNMKVHMRIHTGEKKYVC--ETCGASFVQWGSLNQHNLV 370
             ++R H CS   CGK +   +++K H R HTGEK + C  + C   F +   L++H   
Sbjct: 12  SSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRT 71

Query: 371 H 371
           H
Sbjct: 72  H 72

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens} Length = 72

 Score = 38.9 bits (91), Expect = 2e-04
 Identities = 18/61 (29%), Positives = 25/61 (40%), Gaps = 4/61 (6%)

Query: 399 HTIRQKSICDV--CGKEFKMKKRLKEHMAVHTTDRPFVCDM--CPSAFKLKKHLQQHYKV 454
            +  +  IC    CGK +     LK H   HT ++PF C    C   F     L +H + 
Sbjct: 12  SSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRT 71

Query: 455 H 455
           H
Sbjct: 72  H 72

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 48.6 bits (117), Expect = 3e-08
 Identities = 15/35 (42%), Positives = 20/35 (57%)

Query: 338 VHMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
                 TGEK + C+ CG SF     LN+H++VHT
Sbjct: 2   SSGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHT 36

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 44.8 bits (107), Expect = 8e-07
 Identities = 10/31 (32%), Positives = 16/31 (51%)

Query: 323 CSVCGKAFADITNMKVHMRIHTGEKKYVCET 353
           C +CGK+F   + +  H  +HT EK     +
Sbjct: 15  CDICGKSFCGRSRLNRHSMVHTAEKPSGPSS 45

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A Length = 57

 Score = 48.9 bits (116), Expect = 3e-08
 Identities = 16/53 (30%), Positives = 23/53 (43%)

Query: 321 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHTA 373
           + C  CG      + +K H+R HT  + Y C  C  SF   G+L +H      
Sbjct: 2   YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAH 54

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A Length = 57

 Score = 42.4 bits (99), Expect = 6e-06
 Identities = 19/49 (38%), Positives = 26/49 (53%)

Query: 407 CDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVH 455
           C+ CG   K    LK+H+  HT  RP+ C  C  +FK K +L +H K  
Sbjct: 4   CEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSK 52

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A Length = 57

 Score = 39.3 bits (91), Expect = 9e-05
 Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 1/55 (1%)

Query: 294 CHICKKVFLRYRNLVCHIKAVHEKVRDHQCSVCGKAFADITNMKVHMRIHTGEKK 348
           C  C     +   L  HI+  H  VR + C+ C  +F    N+  HM+     KK
Sbjct: 4   CEECGIRXKKPSMLKKHIR-THTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSKK 57

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 42

 Score = 48.3 bits (116), Expect = 4e-08
 Identities = 16/34 (47%), Positives = 18/34 (52%)

Query: 339 HMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
                 GEK Y C+ CG +F Q GSL  H  VHT
Sbjct: 2   SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHT 35

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 42

 Score = 42.2 bits (100), Expect = 5e-06
 Identities = 12/29 (41%), Positives = 19/29 (65%)

Query: 321 HQCSVCGKAFADITNMKVHMRIHTGEKKY 349
           ++C  CGKAF+   ++ VH+R+HTG    
Sbjct: 12  YRCDQCGKAFSQKGSLIVHIRVHTGSGPS 40

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 47.5 bits (114), Expect = 8e-08
 Identities = 17/34 (50%), Positives = 18/34 (52%)

Query: 339 HMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
                TGEK Y C  CG +FV    LNQH  VHT
Sbjct: 3   SGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHT 36

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 45.2 bits (108), Expect = 6e-07
 Identities = 12/33 (36%), Positives = 19/33 (57%)

Query: 321 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCET 353
           + C+VCGKAF    ++  H+R+HT E      +
Sbjct: 13  YSCNVCGKAFVLSAHLNQHLRVHTQETLSGPSS 45

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 47.5 bits (114), Expect = 8e-08
 Identities = 14/35 (40%), Positives = 15/35 (42%)

Query: 338 VHMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
                  GEK Y C+ CG  F Q   L  H  VHT
Sbjct: 2   SSGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHT 36

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 43.3 bits (103), Expect = 2e-06
 Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 4/45 (8%)

Query: 313 AVHEKV----RDHQCSVCGKAFADITNMKVHMRIHTGEKKYVCET 353
                     + ++C VCGK F+  ++++ H R+HTGEK     +
Sbjct: 1   GSSGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGPSS 45

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 47.1 bits (113), Expect = 1e-07
 Identities = 14/34 (41%), Positives = 18/34 (52%)

Query: 339 HMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
                TGEK Y CE CG +F+    L +H  +HT
Sbjct: 3   SGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHT 36

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 44.4 bits (106), Expect = 1e-06
 Identities = 14/33 (42%), Positives = 19/33 (57%)

Query: 321 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCET 353
           + C  CGKAF   + ++ H RIHTGEK     +
Sbjct: 13  YNCEECGKAFIHDSQLQEHQRIHTGEKPSGPSS 45

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 46.7 bits (112), Expect = 1e-07
 Identities = 13/34 (38%), Positives = 18/34 (52%)

Query: 339 HMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
                TGEK Y+C  CG +F    +L +H  +HT
Sbjct: 3   SGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHT 36

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 44.8 bits (107), Expect = 7e-07
 Identities = 12/33 (36%), Positives = 19/33 (57%)

Query: 321 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCET 353
           + C+ CGKAF   +N+  H +IHT +K     +
Sbjct: 13  YICAECGKAFTIRSNLIKHQKIHTKQKPSGPSS 45

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A Length = 46

 Score = 46.7 bits (112), Expect = 2e-07
 Identities = 13/34 (38%), Positives = 18/34 (52%)

Query: 339 HMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
                TGEK + C  CG  F +  +LN H+ +HT
Sbjct: 3   SGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHT 36

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A Length = 46

 Score = 42.9 bits (102), Expect = 3e-06
 Identities = 12/33 (36%), Positives = 19/33 (57%)

Query: 321 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCET 353
            +C  CGK F+  + + VH ++HTGEK     +
Sbjct: 13  FKCVECGKGFSRRSALNVHHKLHTGEKPSGPSS 45

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 Length = 48

 Score = 46.9 bits (111), Expect = 2e-07
 Identities = 12/36 (33%), Positives = 18/36 (50%)

Query: 319 RDHQCSVCGKAFADITNMKVHMRIHTGEKKYVCETC 354
           +   C +CGK F D+ ++  H   H+GEK Y     
Sbjct: 11  KQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 Length = 48

 Score = 37.2 bits (86), Expect = 4e-04
 Identities = 10/41 (24%), Positives = 20/41 (48%)

Query: 398 AHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMC 438
           +   R++  C++CGK F+    L  H   H+ ++P+     
Sbjct: 6   SGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A Length = 46

 Score = 46.4 bits (111), Expect = 2e-07
 Identities = 14/34 (41%), Positives = 17/34 (50%)

Query: 339 HMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
                TGEK Y C+ CG SF     L +H  VH+
Sbjct: 3   SGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHS 36

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A Length = 46

 Score = 43.7 bits (104), Expect = 2e-06
 Identities = 11/32 (34%), Positives = 17/32 (53%)

Query: 321 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCE 352
           + C  CGK+F   + +  H R+H+GEK     
Sbjct: 13  YNCKECGKSFRWASCLLKHQRVHSGEKPSGPS 44

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 46.4 bits (111), Expect = 2e-07
 Identities = 14/34 (41%), Positives = 17/34 (50%)

Query: 339 HMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
                +GEK + CE CG  F Q   L+ H  VHT
Sbjct: 3   SGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHT 36

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 42.1 bits (100), Expect = 6e-06
 Identities = 12/31 (38%), Positives = 16/31 (51%)

Query: 321 HQCSVCGKAFADITNMKVHMRIHTGEKKYVC 351
            +C  CGK F   + +  H R+HTGEK    
Sbjct: 13  FKCEECGKRFTQNSQLHSHQRVHTGEKPSGP 43

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 46.4 bits (111), Expect = 2e-07
 Identities = 15/34 (44%), Positives = 18/34 (52%)

Query: 339 HMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
                TGEK Y CE CG  F+    L  H++VHT
Sbjct: 3   SGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHT 36

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 44.1 bits (105), Expect = 1e-06
 Identities = 11/33 (33%), Positives = 17/33 (51%)

Query: 321 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCET 353
           ++C  CGK F    ++  H  +HTGEK     +
Sbjct: 13  YKCEECGKGFICRRDLYTHHMVHTGEKPSGPSS 45

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 46.4 bits (111), Expect = 2e-07
 Identities = 14/34 (41%), Positives = 17/34 (50%)

Query: 339 HMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
                TGEK Y CE CG  +    +L+ H  VHT
Sbjct: 3   SGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHT 36

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 43.7 bits (104), Expect = 2e-06
 Identities = 10/31 (32%), Positives = 18/31 (58%)

Query: 321 HQCSVCGKAFADITNMKVHMRIHTGEKKYVC 351
           ++C  CGK +    N+ +H ++HTGE+    
Sbjct: 13  YKCEKCGKGYNSKFNLDMHQKVHTGERPSGP 43

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 46.3 bits (111), Expect = 2e-07
 Identities = 14/35 (40%), Positives = 17/35 (48%)

Query: 338 VHMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
                 TGEK Y C+ C  +F    SL QH  VH+
Sbjct: 2   SSGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHS 36

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 44.4 bits (106), Expect = 1e-06
 Identities = 12/32 (37%), Positives = 19/32 (59%)

Query: 321 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCE 352
           ++C VC KAF+   ++  H R+H+GEK     
Sbjct: 13  YECDVCRKAFSHHASLTQHQRVHSGEKPSGPS 44

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 46.4 bits (111), Expect = 2e-07
 Identities = 12/34 (35%), Positives = 16/34 (47%)

Query: 339 HMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
                +GEK Y C  CG  + +   L+ H  VHT
Sbjct: 3   SGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHT 36

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 43.3 bits (103), Expect = 2e-06
 Identities = 11/31 (35%), Positives = 17/31 (54%)

Query: 321 HQCSVCGKAFADITNMKVHMRIHTGEKKYVC 351
           ++C  CGK +    ++  H R+HTGEK    
Sbjct: 13  YKCVECGKGYKRRLDLDFHQRVHTGEKLSGP 43

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 46.4 bits (111), Expect = 2e-07
 Identities = 13/35 (37%), Positives = 17/35 (48%)

Query: 338 VHMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
                 TGEK Y C  CG +F    SL+ H  +H+
Sbjct: 2   SSGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHS 36

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 44.8 bits (107), Expect = 8e-07
 Identities = 15/31 (48%), Positives = 21/31 (67%)

Query: 323 CSVCGKAFADITNMKVHMRIHTGEKKYVCET 353
           CSVCGKAF+   ++ VH RIH+G+K     +
Sbjct: 15  CSVCGKAFSHRQSLSVHQRIHSGKKPSGPSS 45

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 46.3 bits (111), Expect = 2e-07
 Identities = 13/34 (38%), Positives = 18/34 (52%)

Query: 339 HMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
                +GEK Y C  CG +F +   LN+H  +HT
Sbjct: 3   SGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHT 36

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 42.9 bits (102), Expect = 4e-06
 Identities = 14/32 (43%), Positives = 19/32 (59%)

Query: 321 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCE 352
           ++CS CGKAF   T++  H RIHTG +     
Sbjct: 13  YKCSECGKAFHRHTHLNEHRRIHTGYRPSGPS 44

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 46.3 bits (111), Expect = 2e-07
 Identities = 13/34 (38%), Positives = 16/34 (47%)

Query: 339 HMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
                TGEK Y C  CG +F    +L  H  +HT
Sbjct: 3   SGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHT 36

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 46.0 bits (110), Expect = 3e-07
 Identities = 15/33 (45%), Positives = 22/33 (66%)

Query: 321 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCET 353
           ++C+ CGKAF D +N+  H +IHTGEK     +
Sbjct: 13  YRCAECGKAFTDRSNLFTHQKIHTGEKPSGPSS 45

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 46.3 bits (111), Expect = 2e-07
 Identities = 15/34 (44%), Positives = 18/34 (52%)

Query: 339 HMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
                TGEK Y C  CG +F Q  +L QH  +HT
Sbjct: 3   SGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHT 36

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 44.0 bits (105), Expect = 2e-06
 Identities = 16/31 (51%), Positives = 19/31 (61%)

Query: 321 HQCSVCGKAFADITNMKVHMRIHTGEKKYVC 351
           ++C  CGKAFA   N+  H RIHTGEK    
Sbjct: 13  YRCGECGKAFAQKANLTQHQRIHTGEKPSGP 43

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 45.9 bits (110), Expect = 2e-07
 Identities = 12/34 (35%), Positives = 18/34 (52%)

Query: 339 HMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
                TGE+ Y+C  CG +F    +L +H  +HT
Sbjct: 3   SGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHT 36

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 45.6 bits (109), Expect = 4e-07
 Identities = 16/31 (51%), Positives = 21/31 (67%)

Query: 321 HQCSVCGKAFADITNMKVHMRIHTGEKKYVC 351
           + C+VCGKAF D +N+  H +IHTGEK    
Sbjct: 13  YICTVCGKAFTDRSNLIKHQKIHTGEKPSGP 43

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 46.0 bits (110), Expect = 2e-07
 Identities = 13/34 (38%), Positives = 18/34 (52%)

Query: 339 HMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
                +GEK YVC+ CG +F     L +H  +HT
Sbjct: 3   SGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHT 36

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 43.7 bits (104), Expect = 2e-06
 Identities = 14/30 (46%), Positives = 15/30 (50%)

Query: 322 QCSVCGKAFADITNMKVHMRIHTGEKKYVC 351
            C  CGKAF     +  H RIHTGEK    
Sbjct: 14  VCDYCGKAFGLSAELVRHQRIHTGEKPSGP 43

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 46.0 bits (110), Expect = 3e-07
 Identities = 13/35 (37%), Positives = 16/35 (45%)

Query: 338 VHMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
                 +GEK Y C  CG +F Q   L+ H   HT
Sbjct: 2   SSGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHT 36

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 43.3 bits (103), Expect = 2e-06
 Identities = 12/32 (37%), Positives = 17/32 (53%)

Query: 321 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCE 352
           + C+ CGK F+  + +  H R HTGEK     
Sbjct: 13  YGCNECGKTFSQKSILSAHQRTHTGEKPSGPS 44

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 46.0 bits (110), Expect = 3e-07
 Identities = 14/34 (41%), Positives = 18/34 (52%)

Query: 339 HMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
                TGE+ + C  CG SF+Q   L QH  +HT
Sbjct: 3   SGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHT 36

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 42.1 bits (100), Expect = 6e-06
 Identities = 14/32 (43%), Positives = 19/32 (59%)

Query: 321 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCE 352
           H+C+ CGK+F    ++  H RIHTGEK     
Sbjct: 13  HKCNECGKSFIQSAHLIQHQRIHTGEKPSGPS 44

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 45.9 bits (110), Expect = 3e-07
 Identities = 11/34 (32%), Positives = 16/34 (47%)

Query: 339 HMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
                + EK Y CE CG  + +  +L+ H  VH 
Sbjct: 3   SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHM 36

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 44.0 bits (105), Expect = 1e-06
 Identities = 11/33 (33%), Positives = 18/33 (54%)

Query: 321 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCET 353
           ++C  CGK +    N+ +H R+H GEK     +
Sbjct: 13  YKCEDCGKGYNRRLNLDMHQRVHMGEKTSGPSS 45

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 46.0 bits (110), Expect = 3e-07
 Identities = 13/35 (37%), Positives = 16/35 (45%)

Query: 338 VHMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
                 TG+K Y C  CG  F Q   L +H  +HT
Sbjct: 2   SSGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHT 36

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 41.7 bits (99), Expect = 1e-05
 Identities = 12/31 (38%), Positives = 17/31 (54%)

Query: 322 QCSVCGKAFADITNMKVHMRIHTGEKKYVCE 352
           +C+ CGK F   +++  H  IHTGEK     
Sbjct: 14  KCNECGKVFTQNSHLARHRGIHTGEKPSGPS 44

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 46.0 bits (110), Expect = 3e-07
 Identities = 14/35 (40%), Positives = 18/35 (51%)

Query: 338 VHMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
                 TGEK Y C  CG SF++   L+ H  +HT
Sbjct: 2   SSGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHT 36

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 44.5 bits (106), Expect = 9e-07
 Identities = 14/33 (42%), Positives = 20/33 (60%)

Query: 321 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCET 353
           ++CS CGK+F   + + VH RIHTGE      +
Sbjct: 13  YECSDCGKSFIKKSQLHVHQRIHTGENPSGPSS 45

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 73

 Score = 47.0 bits (111), Expect = 3e-07
 Identities = 14/75 (18%), Positives = 25/75 (33%), Gaps = 8/75 (10%)

Query: 275 SYGGFTSHLDIHSGEKDHCCHICKKVFLRYRNLVCHIKAVHEKVRDHQCSVCGKAFADIT 334
           S G       IH G++   C  C  +F+R        ++   + +   C  C K      
Sbjct: 2   SSGSSGKRQKIHLGDRSQKCSKCGIIFIR--------RSTLSRRKTPMCEKCRKDSCQEA 53

Query: 335 NMKVHMRIHTGEKKY 349
            +       +G+K  
Sbjct: 54  ALNKDEGNESGKKTS 68

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 73

 Score = 39.6 bits (92), Expect = 9e-05
 Identities = 12/100 (12%), Positives = 29/100 (29%), Gaps = 35/100 (35%)

Query: 334 TNMKVHMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHTAVNVVCSYCGNTYKNPKSLES 393
            +     +IH G++   C  CG  F++  +L++                           
Sbjct: 4   GSSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSRR-------------------------- 37

Query: 394 HIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPF 433
                    +  +C+ C K+   +  L +     +  +  
Sbjct: 38  ---------KTPMCEKCRKDSCQEAALNKDEGNESGKKTS 68

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 46.0 bits (110), Expect = 3e-07
 Identities = 16/34 (47%), Positives = 20/34 (58%)

Query: 339 HMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
                TGEK Y+C  CG SF+Q   LN+H  +HT
Sbjct: 3   SGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHT 36

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 43.3 bits (103), Expect = 2e-06
 Identities = 13/32 (40%), Positives = 19/32 (59%)

Query: 321 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCE 352
           + C+ CGK+F   +++  H RIHTGEK     
Sbjct: 13  YICNECGKSFIQKSHLNRHRRIHTGEKPSGPS 44

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 46.0 bits (110), Expect = 3e-07
 Identities = 14/34 (41%), Positives = 17/34 (50%)

Query: 339 HMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
                TGEK + C  CG +F     LNQH  +HT
Sbjct: 3   SGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHT 36

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 44.8 bits (107), Expect = 7e-07
 Identities = 15/33 (45%), Positives = 18/33 (54%)

Query: 321 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCET 353
             C  CGKAF+D   +  H RIHTGEK     +
Sbjct: 13  FDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPSS 45

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 46.0 bits (110), Expect = 3e-07
 Identities = 13/34 (38%), Positives = 17/34 (50%)

Query: 339 HMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
                TGEK Y C  CG +F    +L  H ++HT
Sbjct: 3   SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHT 36

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 44.4 bits (106), Expect = 1e-06
 Identities = 14/32 (43%), Positives = 19/32 (59%)

Query: 321 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCE 352
           ++C+ CGKAF   +N+  H  IHTGEK     
Sbjct: 13  YKCNECGKAFRAHSNLTTHQVIHTGEKPSGPS 44

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 46.0 bits (110), Expect = 3e-07
 Identities = 14/34 (41%), Positives = 16/34 (47%)

Query: 339 HMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
                TGEK Y C+ C  SF    SL  H  +HT
Sbjct: 3   SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHT 36

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 44.0 bits (105), Expect = 1e-06
 Identities = 14/31 (45%), Positives = 20/31 (64%)

Query: 321 HQCSVCGKAFADITNMKVHMRIHTGEKKYVC 351
           ++C VC K+F   +++ VH RIHTGEK    
Sbjct: 13  YKCDVCHKSFRYGSSLTVHQRIHTGEKPSGP 43

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 45.6 bits (109), Expect = 3e-07
 Identities = 14/34 (41%), Positives = 17/34 (50%)

Query: 339 HMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
                TGEK Y C  CG +F Q   L +H  +HT
Sbjct: 3   SGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHT 36

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 42.9 bits (102), Expect = 3e-06
 Identities = 14/33 (42%), Positives = 21/33 (63%)

Query: 321 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCET 353
           ++C+ CGKAF+  + +  H RIHTGEK     +
Sbjct: 13  YKCNECGKAFSQTSKLARHQRIHTGEKPSGPSS 45

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 45.6 bits (109), Expect = 3e-07
 Identities = 14/35 (40%), Positives = 17/35 (48%)

Query: 338 VHMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
                 TGEK Y C  CG SF +   L+ H  +HT
Sbjct: 2   SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHT 36

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 44.8 bits (107), Expect = 8e-07
 Identities = 14/33 (42%), Positives = 22/33 (66%)

Query: 321 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCET 353
           ++CS+CGK+F   + + VH +IHTGEK     +
Sbjct: 13  YECSICGKSFTKKSQLHVHQQIHTGEKPSGPSS 45

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 45

 Score = 45.6 bits (109), Expect = 3e-07
 Identities = 13/34 (38%), Positives = 17/34 (50%)

Query: 339 HMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
                TG+K + C  CG SF   G+L  H  +HT
Sbjct: 3   SGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHT 36

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 45

 Score = 43.7 bits (104), Expect = 2e-06
 Identities = 14/30 (46%), Positives = 18/30 (60%)

Query: 322 QCSVCGKAFADITNMKVHMRIHTGEKKYVC 351
           +C+ CGK+F    N+  H RIHTGEK    
Sbjct: 14  ECTHCGKSFRAKGNLVTHQRIHTGEKSGPS 43

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A Length = 46

 Score = 45.6 bits (109), Expect = 3e-07
 Identities = 16/34 (47%), Positives = 18/34 (52%)

Query: 339 HMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
                TGEK Y C+ CG +F Q   L QH  VHT
Sbjct: 3   SGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHT 36

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A Length = 46

 Score = 42.9 bits (102), Expect = 4e-06
 Identities = 14/31 (45%), Positives = 20/31 (64%)

Query: 321 HQCSVCGKAFADITNMKVHMRIHTGEKKYVC 351
           ++C  CGKAF+  T++  H R+HTGEK    
Sbjct: 13  YECKECGKAFSQTTHLIQHQRVHTGEKPSGP 43

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 45.6 bits (109), Expect = 3e-07
 Identities = 14/34 (41%), Positives = 14/34 (41%)

Query: 339 HMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
                TGEK Y C  CG SF     L  H   HT
Sbjct: 3   SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHT 36

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 43.7 bits (104), Expect = 2e-06
 Identities = 11/31 (35%), Positives = 20/31 (64%)

Query: 321 HQCSVCGKAFADITNMKVHMRIHTGEKKYVC 351
           ++CS CGK+F   + +++H + HTGE+    
Sbjct: 13  YKCSDCGKSFTWKSRLRIHQKCHTGERHSGP 43

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 45.6 bits (109), Expect = 3e-07
 Identities = 13/34 (38%), Positives = 18/34 (52%)

Query: 339 HMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
                TGEK Y C+ CG SF +   L +H  +H+
Sbjct: 3   SGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHS 36

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 42.9 bits (102), Expect = 3e-06
 Identities = 11/31 (35%), Positives = 17/31 (54%)

Query: 321 HQCSVCGKAFADITNMKVHMRIHTGEKKYVC 351
           + C  CGK+F+    +  H R+H+GEK    
Sbjct: 13  YNCKECGKSFSRAPCLLKHERLHSGEKPSGP 43

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 45.6 bits (109), Expect = 4e-07
 Identities = 13/40 (32%), Positives = 19/40 (47%)

Query: 312 KAVHEKVRDHQCSVCGKAFADITNMKVHMRIHTGEKKYVC 351
            +  E  + +QCS CGK+F+    +  H   HT EK    
Sbjct: 4   GSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGP 43

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 43.3 bits (103), Expect = 3e-06
 Identities = 14/34 (41%), Positives = 15/34 (44%)

Query: 339 HMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
                 GEK Y C  CG SF     L QH + HT
Sbjct: 3   SGSSGEGEKPYQCSECGKSFSGSYRLTQHWITHT 36

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 45.6 bits (109), Expect = 4e-07
 Identities = 13/34 (38%), Positives = 18/34 (52%)

Query: 339 HMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
                TG K Y+C  CG +F  + SL  H ++HT
Sbjct: 3   SGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHT 36

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 43.7 bits (104), Expect = 2e-06
 Identities = 13/32 (40%), Positives = 19/32 (59%)

Query: 321 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCE 352
           + C+ CGKAF+  +++  H  IHTGEK     
Sbjct: 13  YMCNECGKAFSVYSSLTTHQVIHTGEKPSGPS 44

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 45.6 bits (109), Expect = 4e-07
 Identities = 11/34 (32%), Positives = 15/34 (44%)

Query: 339 HMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
                 G+K + C  C  +F Q  SL  H  +HT
Sbjct: 3   SGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHT 36

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 42.9 bits (102), Expect = 3e-06
 Identities = 13/31 (41%), Positives = 18/31 (58%)

Query: 321 HQCSVCGKAFADITNMKVHMRIHTGEKKYVC 351
            +C+ C K F   +++ VH RIHTGEK    
Sbjct: 13  FKCNECKKTFTQSSSLTVHQRIHTGEKPSGP 43

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 45.5 bits (109), Expect = 4e-07
 Identities = 12/35 (34%), Positives = 14/35 (40%)

Query: 338 VHMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
                 TGEK Y C  C  +F    +L  H   HT
Sbjct: 2   SSGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHT 36

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 44.0 bits (105), Expect = 1e-06
 Identities = 13/31 (41%), Positives = 18/31 (58%)

Query: 321 HQCSVCGKAFADITNMKVHMRIHTGEKKYVC 351
           ++C+ C KAF   +N+ VH R HTGE     
Sbjct: 13  YECNECQKAFNTKSNLMVHQRTHTGESGPSS 43

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 45.3 bits (108), Expect = 4e-07
 Identities = 14/34 (41%), Positives = 16/34 (47%)

Query: 339 HMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
                TGEK Y C  CG +F    S  QH  +HT
Sbjct: 3   SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHT 36

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 44.1 bits (105), Expect = 1e-06
 Identities = 12/32 (37%), Positives = 19/32 (59%)

Query: 321 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCE 352
           ++C  CGKAF D ++   H R+HTG++     
Sbjct: 13  YKCMECGKAFGDNSSCTQHQRLHTGQRPSGPS 44

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 45.2 bits (108), Expect = 5e-07
 Identities = 14/34 (41%), Positives = 16/34 (47%)

Query: 339 HMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
                TGEK Y C+ C  +F Q   L QH   HT
Sbjct: 3   SGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHT 36

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 44.4 bits (106), Expect = 1e-06
 Identities = 12/32 (37%), Positives = 17/32 (53%)

Query: 321 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCE 352
           ++C VC KAF    ++  H + HTGEK     
Sbjct: 13  YECKVCSKAFTQKAHLAQHQKTHTGEKPSGPS 44

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 44

 Score = 45.2 bits (108), Expect = 5e-07
 Identities = 11/33 (33%), Positives = 16/33 (48%)

Query: 321 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCET 353
             CS C KAF+  + + VH + H  EK     +
Sbjct: 11  FGCSCCEKAFSSKSYLLVHQQTHAEEKPSGPSS 43

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 44

 Score = 36.4 bits (85), Expect = 7e-04
 Identities = 9/32 (28%), Positives = 12/32 (37%)

Query: 341 RIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
              +GEK + C  C  +F     L  H   H 
Sbjct: 3   SGSSGEKPFGCSCCEKAFSSKSYLLVHQQTHA 34

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 45.2 bits (108), Expect = 5e-07
 Identities = 14/34 (41%), Positives = 18/34 (52%)

Query: 339 HMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
                TGEK Y C+ CG +F     L QH+ VH+
Sbjct: 3   SGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHS 36

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 43.3 bits (103), Expect = 2e-06
 Identities = 11/32 (34%), Positives = 19/32 (59%)

Query: 322 QCSVCGKAFADITNMKVHMRIHTGEKKYVCET 353
           +C VCGKAF   +++  H  +H+GE+     +
Sbjct: 14  KCQVCGKAFRVSSHLVQHHSVHSGERPSGPSS 45

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 45.2 bits (108), Expect = 5e-07
 Identities = 14/33 (42%), Positives = 19/33 (57%)

Query: 321 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCET 353
           HQC  CG+ F   +++  H RIHTGEK     +
Sbjct: 13  HQCHECGRGFTLKSHLNQHQRIHTGEKPSGPSS 45

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 44.8 bits (107), Expect = 7e-07
 Identities = 11/34 (32%), Positives = 14/34 (41%)

Query: 339 HMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
                +  K + C  CG  F     LNQH  +HT
Sbjct: 3   SGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHT 36

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A Length = 46

 Score = 45.2 bits (108), Expect = 5e-07
 Identities = 14/34 (41%), Positives = 18/34 (52%)

Query: 339 HMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
                TGEK+Y C  CG  F +   L+QH  +HT
Sbjct: 3   SGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHT 36

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A Length = 46

 Score = 42.9 bits (102), Expect = 3e-06
 Identities = 12/33 (36%), Positives = 20/33 (60%)

Query: 321 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCET 353
           ++C+ CGK F+  + +  H +IHTGEK     +
Sbjct: 13  YKCNECGKVFSRNSQLSQHQKIHTGEKPSGPSS 45

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 45.2 bits (108), Expect = 5e-07
 Identities = 12/34 (35%), Positives = 18/34 (52%)

Query: 339 HMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
                TGE+ Y C  CG +F+Q  +L+ H  +H 
Sbjct: 3   SGSSGTGERHYECSECGKAFIQKSTLSMHQRIHR 36

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 44.1 bits (105), Expect = 1e-06
 Identities = 14/31 (45%), Positives = 19/31 (61%)

Query: 321 HQCSVCGKAFADITNMKVHMRIHTGEKKYVC 351
           ++CS CGKAF   + + +H RIH GEK    
Sbjct: 13  YECSECGKAFIQKSTLSMHQRIHRGEKPSGP 43

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 45.2 bits (108), Expect = 5e-07
 Identities = 14/34 (41%), Positives = 17/34 (50%)

Query: 339 HMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
                +GEK + CE CG  F Q   L+ H  VHT
Sbjct: 3   SGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHT 36

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 42.1 bits (100), Expect = 6e-06
 Identities = 13/33 (39%), Positives = 18/33 (54%)

Query: 321 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCET 353
            QC  CGK F   +++  H R+HTGEK     +
Sbjct: 13  FQCEECGKRFTQNSHLHSHQRVHTGEKPSGPSS 45

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 45.2 bits (108), Expect = 5e-07
 Identities = 17/42 (40%), Positives = 21/42 (50%)

Query: 312 KAVHEKVRDHQCSVCGKAFADITNMKVHMRIHTGEKKYVCET 353
            +     R H+CS CGK F   +N   H RIHTGEK     +
Sbjct: 4   GSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGPSS 45

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 44.5 bits (106), Expect = 1e-06
 Identities = 11/34 (32%), Positives = 16/34 (47%)

Query: 339 HMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
                 GE+ + C  CG  F+Q  +  QH  +HT
Sbjct: 3   SGSSGHGERGHRCSDCGKFFLQASNFIQHRRIHT 36

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 45.2 bits (108), Expect = 5e-07
 Identities = 14/34 (41%), Positives = 16/34 (47%)

Query: 339 HMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
                TG K Y C  CG +F Q   L +H  VHT
Sbjct: 3   SGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHT 36

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 43.7 bits (104), Expect = 2e-06
 Identities = 14/33 (42%), Positives = 21/33 (63%)

Query: 321 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCET 353
           +QC+ CGKAF+  + +  H R+HTGEK     +
Sbjct: 13  YQCNECGKAFSQTSKLARHQRVHTGEKPSGPSS 45

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 45.2 bits (108), Expect = 5e-07
 Identities = 13/34 (38%), Positives = 15/34 (44%)

Query: 339 HMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
                +GEK Y C  CG  F Q   L  H  +HT
Sbjct: 3   SGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHT 36

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 42.1 bits (100), Expect = 6e-06
 Identities = 13/30 (43%), Positives = 18/30 (60%)

Query: 322 QCSVCGKAFADITNMKVHMRIHTGEKKYVC 351
           +C+ CGK F   +++  H RIHTGEK    
Sbjct: 14  KCNECGKVFTQNSHLTNHWRIHTGEKPSGP 43

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 45.2 bits (108), Expect = 5e-07
 Identities = 11/34 (32%), Positives = 15/34 (44%)

Query: 339 HMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
                TGE  ++C  CG  F    +L  H  +HT
Sbjct: 3   SGSSGTGENPFICSECGKVFTHKTNLIIHQKIHT 36

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 44.4 bits (106), Expect = 1e-06
 Identities = 14/31 (45%), Positives = 18/31 (58%)

Query: 321 HQCSVCGKAFADITNMKVHMRIHTGEKKYVC 351
             CS CGK F   TN+ +H +IHTGE+    
Sbjct: 13  FICSECGKVFTHKTNLIIHQKIHTGERPSGP 43

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 45.2 bits (108), Expect = 5e-07
 Identities = 13/34 (38%), Positives = 16/34 (47%)

Query: 339 HMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
                TGEK Y C  CG +F +   L+ H   HT
Sbjct: 3   SGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHT 36

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 44.8 bits (107), Expect = 8e-07
 Identities = 12/31 (38%), Positives = 19/31 (61%)

Query: 321 HQCSVCGKAFADITNMKVHMRIHTGEKKYVC 351
           ++CS CGKAF   + + +H + HTGE+    
Sbjct: 13  YKCSDCGKAFTRKSGLHIHQQSHTGERHSGP 43

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 45.2 bits (108), Expect = 6e-07
 Identities = 14/34 (41%), Positives = 16/34 (47%)

Query: 339 HMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
                TGEK Y C  CG +F    SL  H  +HT
Sbjct: 3   SGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHT 36

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 42.9 bits (102), Expect = 3e-06
 Identities = 12/32 (37%), Positives = 20/32 (62%)

Query: 321 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCE 352
           ++C+ CGKAF+  +++  H  IHTG+K     
Sbjct: 13  YECNQCGKAFSVRSSLTTHQAIHTGKKPSGPS 44

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A Length = 46

 Score = 45.2 bits (108), Expect = 6e-07
 Identities = 13/34 (38%), Positives = 15/34 (44%)

Query: 339 HMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
                TGEK + C  CG SF     L  H  +HT
Sbjct: 3   SGSSGTGEKPFECAECGKSFSISSQLATHQRIHT 36

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A Length = 46

 Score = 44.8 bits (107), Expect = 6e-07
 Identities = 13/33 (39%), Positives = 20/33 (60%)

Query: 321 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCET 353
            +C+ CGK+F+  + +  H RIHTGEK     +
Sbjct: 13  FECAECGKSFSISSQLATHQRIHTGEKPSGPSS 45

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 45.2 bits (108), Expect = 6e-07
 Identities = 15/33 (45%), Positives = 19/33 (57%)

Query: 321 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCET 353
            +CS C KAF   +N+ VH R HTGEK     +
Sbjct: 13  FECSECQKAFNTKSNLIVHQRTHTGEKPSGPSS 45

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 44.0 bits (105), Expect = 1e-06
 Identities = 11/34 (32%), Positives = 14/34 (41%)

Query: 339 HMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
                TGEK + C  C  +F    +L  H   HT
Sbjct: 3   SGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHT 36

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 44.8 bits (107), Expect = 6e-07
 Identities = 15/34 (44%), Positives = 17/34 (50%)

Query: 339 HMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
                TGEK + C  CG S+ Q   L QH  VHT
Sbjct: 3   SGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHT 36

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 42.1 bits (100), Expect = 6e-06
 Identities = 11/31 (35%), Positives = 17/31 (54%)

Query: 321 HQCSVCGKAFADITNMKVHMRIHTGEKKYVC 351
            +C  CGK++    ++  H R+HTGEK    
Sbjct: 13  FKCGECGKSYNQRVHLTQHQRVHTGEKPSGP 43

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 44.8 bits (107), Expect = 6e-07
 Identities = 12/31 (38%), Positives = 17/31 (54%)

Query: 321 HQCSVCGKAFADITNMKVHMRIHTGEKKYVC 351
           + C+ CGKAF   + + +H R HTGE     
Sbjct: 13  YVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 44.0 bits (105), Expect = 1e-06
 Identities = 13/34 (38%), Positives = 14/34 (41%)

Query: 339 HMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
                TG K YVC  CG +F     L  H   HT
Sbjct: 3   SGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHT 36

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 44.9 bits (107), Expect = 6e-07
 Identities = 10/34 (29%), Positives = 13/34 (38%)

Query: 339 HMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
                +GEK + CE CG  F        H   H+
Sbjct: 3   SGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHS 36

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 43.7 bits (104), Expect = 2e-06
 Identities = 12/35 (34%), Positives = 15/35 (42%), Gaps = 1/35 (2%)

Query: 321 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCETCG 355
            +C  CGK F   +    H R H+GEK       G
Sbjct: 13  FKCEECGKGFYTNSQCYSHQRSHSGEKPSGPS-SG 46

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 44.8 bits (107), Expect = 7e-07
 Identities = 11/34 (32%), Positives = 17/34 (50%)

Query: 339 HMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
                TG K + C  CG +F +  +L+ H  +HT
Sbjct: 3   SGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHT 36

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 43.7 bits (104), Expect = 2e-06
 Identities = 13/32 (40%), Positives = 19/32 (59%)

Query: 321 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCE 352
            +C+ CGKAF   + + +H +IHTGEK     
Sbjct: 13  FECTECGKAFTRKSTLSMHQKIHTGEKPSGPS 44

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 44.8 bits (107), Expect = 7e-07
 Identities = 14/33 (42%), Positives = 21/33 (63%)

Query: 321 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCET 353
           + CS CGKAF+  + + +HMR H+GEK     +
Sbjct: 13  YGCSECGKAFSSKSYLIIHMRTHSGEKPSGPSS 45

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 43.3 bits (103), Expect = 3e-06
 Identities = 11/34 (32%), Positives = 13/34 (38%)

Query: 339 HMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
                 GEK Y C  CG +F     L  H   H+
Sbjct: 3   SGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHS 36

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 44.8 bits (107), Expect = 7e-07
 Identities = 14/34 (41%), Positives = 16/34 (47%)

Query: 339 HMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
                TGEK Y C  CG  F Q   L +H  +HT
Sbjct: 3   SGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHT 36

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 42.1 bits (100), Expect = 6e-06
 Identities = 12/32 (37%), Positives = 18/32 (56%)

Query: 322 QCSVCGKAFADITNMKVHMRIHTGEKKYVCET 353
           +C+ CGK F   +++  H  IHTGEK     +
Sbjct: 14  KCNECGKVFTQNSHLVRHRGIHTGEKPSGPSS 45

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 44.8 bits (107), Expect = 7e-07
 Identities = 14/34 (41%), Positives = 15/34 (44%)

Query: 339 HMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
                TGEK Y C  CG  F Q   L  H  +HT
Sbjct: 3   SGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHT 36

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 42.9 bits (102), Expect = 3e-06
 Identities = 12/32 (37%), Positives = 18/32 (56%)

Query: 322 QCSVCGKAFADITNMKVHMRIHTGEKKYVCET 353
           +C+ CGK F   +++  H RIHTG K     +
Sbjct: 14  KCNECGKVFTQNSHLANHQRIHTGVKPSGPSS 45

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 44.8 bits (107), Expect = 7e-07
 Identities = 12/34 (35%), Positives = 17/34 (50%)

Query: 339 HMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
                TGE+ Y C  CG +F +  +L  H  +HT
Sbjct: 3   SGSSGTGERHYECSECGKAFARKSTLIMHQRIHT 36

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 44.4 bits (106), Expect = 8e-07
 Identities = 16/33 (48%), Positives = 22/33 (66%)

Query: 321 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCET 353
           ++CS CGKAFA  + + +H RIHTGEK     +
Sbjct: 13  YECSECGKAFARKSTLIMHQRIHTGEKPSGPSS 45

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 44.9 bits (107), Expect = 7e-07
 Identities = 10/31 (32%), Positives = 16/31 (51%)

Query: 321 HQCSVCGKAFADITNMKVHMRIHTGEKKYVC 351
            +C+ CGKAF   + + +H R H  +K    
Sbjct: 13  CKCTECGKAFCWKSQLIMHQRTHVDDKHSGP 43

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 41.4 bits (98), Expect = 1e-05
 Identities = 11/34 (32%), Positives = 12/34 (35%)

Query: 339 HMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
                TGEK   C  CG +F     L  H   H 
Sbjct: 3   SGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHV 36

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 44.8 bits (107), Expect = 8e-07
 Identities = 11/32 (34%), Positives = 17/32 (53%)

Query: 321 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCE 352
           ++C  C K F  I ++  H R+HTGE+     
Sbjct: 13  YECKECRKTFIQIGHLNQHKRVHTGERSSGPS 44

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 43.3 bits (103), Expect = 2e-06
 Identities = 15/34 (44%), Positives = 20/34 (58%)

Query: 339 HMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
                +G+K Y C+ C  +F+Q G LNQH  VHT
Sbjct: 3   SGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHT 36

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 44.5 bits (106), Expect = 8e-07
 Identities = 11/34 (32%), Positives = 15/34 (44%)

Query: 339 HMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
                T  K Y C  CG +F +   L +H  +HT
Sbjct: 3   SGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHT 36

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 37.2 bits (87), Expect = 4e-04
 Identities = 11/31 (35%), Positives = 17/31 (54%)

Query: 321 HQCSVCGKAFADITNMKVHMRIHTGEKKYVC 351
           + C+ CGKAF  I ++  H +IHT +     
Sbjct: 13  YNCNECGKAFTRIFHLTRHQKIHTRKSGPSS 43

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 44.5 bits (106), Expect = 9e-07
 Identities = 13/42 (30%), Positives = 21/42 (50%)

Query: 312 KAVHEKVRDHQCSVCGKAFADITNMKVHMRIHTGEKKYVCET 353
            +     + H C  CGK F  I+ +++H R+H GEK     +
Sbjct: 4   GSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGPSS 45

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 43.7 bits (104), Expect = 1e-06
 Identities = 11/34 (32%), Positives = 16/34 (47%)

Query: 339 HMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
                +GEK + C+ CG +F    +L  H  VH 
Sbjct: 3   SGSSGSGEKSHTCDECGKNFCYISALRIHQRVHM 36

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 44.5 bits (106), Expect = 9e-07
 Identities = 12/34 (35%), Positives = 15/34 (44%)

Query: 339 HMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
                TG++ Y C  CG +F    SL  H   HT
Sbjct: 3   SGSSGTGQRPYECIECGKAFKTKSSLICHRRSHT 36

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 43.7 bits (104), Expect = 2e-06
 Identities = 13/31 (41%), Positives = 18/31 (58%)

Query: 321 HQCSVCGKAFADITNMKVHMRIHTGEKKYVC 351
           ++C  CGKAF   +++  H R HTGEK    
Sbjct: 13  YECIECGKAFKTKSSLICHRRSHTGEKPSGP 43

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 44.4 bits (106), Expect = 9e-07
 Identities = 13/34 (38%), Positives = 16/34 (47%)

Query: 339 HMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
                TGEK Y C  CG  F     L++H  +HT
Sbjct: 3   SGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHT 36

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 42.5 bits (101), Expect = 4e-06
 Identities = 13/32 (40%), Positives = 18/32 (56%)

Query: 321 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCE 352
           ++C+ CGK F   + +  H RIHTGEK     
Sbjct: 13  YKCNECGKVFRHNSYLSRHQRIHTGEKPSGPS 44

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 44.4 bits (106), Expect = 9e-07
 Identities = 12/34 (35%), Positives = 17/34 (50%)

Query: 339 HMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
                +GEK + C+ CG +F Q   L  H  +HT
Sbjct: 3   SGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHT 36

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 44.0 bits (105), Expect = 2e-06
 Identities = 14/33 (42%), Positives = 19/33 (57%)

Query: 321 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCET 353
            +C  CGKAF    ++  H+RIHTGEK     +
Sbjct: 13  FKCKECGKAFRQNIHLASHLRIHTGEKPSGPSS 45

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A Length = 46

 Score = 44.4 bits (106), Expect = 1e-06
 Identities = 12/33 (36%), Positives = 17/33 (51%)

Query: 321 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCET 353
           + CS C K F+  + + VH R HTG K     +
Sbjct: 13  YGCSQCAKTFSLKSQLIVHQRSHTGVKPSGPSS 45

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A Length = 46

 Score = 42.9 bits (102), Expect = 3e-06
 Identities = 11/34 (32%), Positives = 12/34 (35%)

Query: 339 HMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
                TG K Y C  C  +F     L  H   HT
Sbjct: 3   SGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHT 36

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 44.4 bits (106), Expect = 1e-06
 Identities = 11/35 (31%), Positives = 13/35 (37%)

Query: 338 VHMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
                 TGE  Y C  CG +F +   L  H   H 
Sbjct: 2   SSGSSGTGENPYECHECGKAFSRKYQLISHQRTHA 36

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 43.3 bits (103), Expect = 3e-06
 Identities = 12/43 (27%), Positives = 16/43 (37%), Gaps = 4/43 (9%)

Query: 313 AVHEKV----RDHQCSVCGKAFADITNMKVHMRIHTGEKKYVC 351
                       ++C  CGKAF+    +  H R H GEK    
Sbjct: 1   GSSGSSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGP 43

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 44.4 bits (106), Expect = 1e-06
 Identities = 11/34 (32%), Positives = 14/34 (41%)

Query: 339 HMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
                +GEK Y C  CG +F+    L  H   H 
Sbjct: 3   SGSSGSGEKPYECNECGKAFIWKSLLIVHERTHA 36

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 42.5 bits (101), Expect = 5e-06
 Identities = 11/31 (35%), Positives = 16/31 (51%)

Query: 321 HQCSVCGKAFADITNMKVHMRIHTGEKKYVC 351
           ++C+ CGKAF   + + VH R H G      
Sbjct: 13  YECNECGKAFIWKSLLIVHERTHAGVSGPSS 43

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 44.4 bits (106), Expect = 1e-06
 Identities = 14/34 (41%), Positives = 17/34 (50%)

Query: 339 HMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
                TGEK Y C  CG  F +   L +H L+HT
Sbjct: 3   SGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHT 36

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 43.2 bits (103), Expect = 2e-06
 Identities = 12/33 (36%), Positives = 18/33 (54%)

Query: 321 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCET 353
           ++C  CGK F   +++  H  IHTGEK     +
Sbjct: 13  YKCHECGKVFRRNSHLARHQLIHTGEKPSGPSS 45

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 44.0 bits (105), Expect = 1e-06
 Identities = 14/34 (41%), Positives = 16/34 (47%)

Query: 339 HMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
                TGEK Y C  CG  F Q   L +H  +HT
Sbjct: 3   SGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHT 36

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 41.7 bits (99), Expect = 8e-06
 Identities = 12/32 (37%), Positives = 18/32 (56%)

Query: 322 QCSVCGKAFADITNMKVHMRIHTGEKKYVCET 353
           +C+ CGK F   +++  H  IHTGEK     +
Sbjct: 14  KCNECGKVFTQNSHLARHRGIHTGEKPSGPSS 45

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1} Length = 129

 Score = 46.5 bits (109), Expect = 1e-06
 Identities = 21/108 (19%), Positives = 34/108 (31%), Gaps = 3/108 (2%)

Query: 294 CHICKKVFLRYRNLVCHIKAVHEKVRDHQCSVCGKAFADITNMKVHMRIHTGEKKYVCET 353
            H+  +   RY  L    K +       +  +      D ++    +       ++VC  
Sbjct: 22  IHVTLEELKRYHQLTPEQKRLIRA--IVKTLIHNPQLLDESSYLYRLLASKAISQFVCPL 79

Query: 354 CGASFVQWGSLNQHNLVHTAVNVVCSYCGNTYKNPKSLESHIRYAHTI 401
           C   F    SL QH         VC  C   + +  S   H+   H I
Sbjct: 80  CLMPFSSSVSLKQHIRYTEH-TKVCPVCKKEFTSTDSALDHVCKKHNI 126

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 44.1 bits (105), Expect = 1e-06
 Identities = 13/34 (38%), Positives = 15/34 (44%)

Query: 339 HMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
                TGEK + C  CG SF     L  H  +HT
Sbjct: 3   SGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHT 36

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 43.7 bits (104), Expect = 2e-06
 Identities = 14/31 (45%), Positives = 19/31 (61%)

Query: 321 HQCSVCGKAFADITNMKVHMRIHTGEKKYVC 351
           H+C  CGK+F+  + + VH RIHTGE     
Sbjct: 13  HECRECGKSFSFNSQLIVHQRIHTGENPSGP 43

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 44.1 bits (105), Expect = 1e-06
 Identities = 13/34 (38%), Positives = 15/34 (44%)

Query: 339 HMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
                TGEK Y C  CG +F    SL  H   H+
Sbjct: 3   SGSSGTGEKPYKCNECGKAFRARSSLAIHQATHS 36

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 43.3 bits (103), Expect = 2e-06
 Identities = 11/31 (35%), Positives = 19/31 (61%)

Query: 321 HQCSVCGKAFADITNMKVHMRIHTGEKKYVC 351
           ++C+ CGKAF   +++ +H   H+GEK    
Sbjct: 13  YKCNECGKAFRARSSLAIHQATHSGEKPSGP 43

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 44.0 bits (105), Expect = 1e-06
 Identities = 15/34 (44%), Positives = 16/34 (47%)

Query: 339 HMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
                TGEK Y C  CG  F Q   L +H  VHT
Sbjct: 3   SGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHT 36

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 41.7 bits (99), Expect = 8e-06
 Identities = 11/33 (33%), Positives = 19/33 (57%)

Query: 321 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCET 353
           ++C+ CGK F   +++  H R+HTG K     +
Sbjct: 13  YKCNECGKVFTQNSHLARHRRVHTGGKPSGPSS 45

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A Length = 42

 Score = 43.7 bits (104), Expect = 2e-06
 Identities = 12/31 (38%), Positives = 15/31 (48%)

Query: 321 HQCSVCGKAFADITNMKVHMRIHTGEKKYVC 351
           ++CS CGKAF     +  H R H GE     
Sbjct: 11  YECSECGKAFNRKDQLISHQRTHAGESGPSS 41

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A Length = 42

 Score = 39.4 bits (93), Expect = 5e-05
 Identities = 10/32 (31%), Positives = 13/32 (40%)

Query: 341 RIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
              +GE  Y C  CG +F +   L  H   H 
Sbjct: 3   SGSSGENPYECSECGKAFNRKDQLISHQRTHA 34

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} Length = 46

 Score = 43.7 bits (104), Expect = 2e-06
 Identities = 12/31 (38%), Positives = 18/31 (58%)

Query: 321 HQCSVCGKAFADITNMKVHMRIHTGEKKYVC 351
           ++CS C K+F+    + VH R+HT EK    
Sbjct: 13  YKCSQCEKSFSGKLRLLVHQRMHTREKPSGP 43

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} Length = 46

 Score = 40.2 bits (95), Expect = 3e-05
 Identities = 10/34 (29%), Positives = 11/34 (32%)

Query: 339 HMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
                 G   Y C  C  SF     L  H  +HT
Sbjct: 3   SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHT 36

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 43.3 bits (103), Expect = 2e-06
 Identities = 11/42 (26%), Positives = 21/42 (50%)

Query: 312 KAVHEKVRDHQCSVCGKAFADITNMKVHMRIHTGEKKYVCET 353
            +     R  +C+ CGK F   +++  H+R+H+ EK     +
Sbjct: 4   GSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGPSS 45

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 41.0 bits (97), Expect = 1e-05
 Identities = 9/34 (26%), Positives = 15/34 (44%)

Query: 339 HMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
                +GE+ + C  CG  F +   L  H  +H+
Sbjct: 3   SGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHS 36

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} Length = 46

 Score = 43.3 bits (103), Expect = 2e-06
 Identities = 8/31 (25%), Positives = 16/31 (51%)

Query: 321 HQCSVCGKAFADITNMKVHMRIHTGEKKYVC 351
            +C  C   F+  +++++H  +H GEK    
Sbjct: 13  WKCRECDMCFSQASSLRLHQNVHVGEKPSGP 43

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} Length = 46

 Score = 42.1 bits (100), Expect = 6e-06
 Identities = 12/34 (35%), Positives = 13/34 (38%)

Query: 339 HMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
                 GEK + C  C   F Q  SL  H  VH 
Sbjct: 3   SGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHV 36

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 43.3 bits (103), Expect = 3e-06
 Identities = 12/34 (35%), Positives = 16/34 (47%)

Query: 339 HMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
                TGEK + C+ CG +F    SL +H   H 
Sbjct: 3   SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHE 36

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 41.8 bits (99), Expect = 9e-06
 Identities = 8/33 (24%), Positives = 13/33 (39%)

Query: 321 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCET 353
            QC  CG  F+   ++  H+R H         +
Sbjct: 13  FQCKECGMNFSWSCSLFKHLRSHERTDPSGPSS 45

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A Length = 42

 Score = 43.0 bits (102), Expect = 3e-06
 Identities = 13/34 (38%), Positives = 15/34 (44%)

Query: 339 HMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
                 GE  Y+C  CG SF Q GSL  H    +
Sbjct: 2   SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCS 35

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A Length = 42

 Score = 43.0 bits (102), Expect = 3e-06
 Identities = 8/29 (27%), Positives = 13/29 (44%)

Query: 321 HQCSVCGKAFADITNMKVHMRIHTGEKKY 349
           + C  CGK+F    ++ VH R  +     
Sbjct: 12  YLCGQCGKSFTQRGSLAVHQRSCSQSGPS 40

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 47

 Score = 42.9 bits (102), Expect = 4e-06
 Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)

Query: 339 HMRIHTGEKKYVCETCGASFVQWGSLNQHN-LVHT 372
                TG+K Y C  CG +F+Q  SL +H    HT
Sbjct: 3   SGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHT 37

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 47

 Score = 39.1 bits (92), Expect = 8e-05
 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)

Query: 321 HQCSVCGKAFADITNMKVHMR-IHTGEKKYVC 351
           ++C  CGKAF   T++  H R  HTGEK    
Sbjct: 13  YECIECGKAFIQNTSLIRHWRYYHTGEKPSGP 44

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 42.9 bits (102), Expect = 4e-06
 Identities = 10/42 (23%), Positives = 19/42 (45%)

Query: 312 KAVHEKVRDHQCSVCGKAFADITNMKVHMRIHTGEKKYVCET 353
            +     R + C+ CGK F   +++  H++ H  EK     +
Sbjct: 4   GSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGPSS 45

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 42.5 bits (101), Expect = 4e-06
 Identities = 10/34 (29%), Positives = 15/34 (44%)

Query: 339 HMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
                +GE+ Y C  CG +F +   L +H   H 
Sbjct: 3   SGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHF 36

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 41

 Score = 42.6 bits (101), Expect = 4e-06
 Identities = 11/29 (37%), Positives = 17/29 (58%)

Query: 321 HQCSVCGKAFADITNMKVHMRIHTGEKKY 349
           ++C  CGK+F    ++ +H RIHTG    
Sbjct: 11  YECQECGKSFRQKGSLTLHERIHTGSGPS 39

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 41

 Score = 40.6 bits (96), Expect = 2e-05
 Identities = 14/32 (43%), Positives = 19/32 (59%)

Query: 341 RIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
              +G++ Y C+ CG SF Q GSL  H  +HT
Sbjct: 3   SGSSGQRVYECQECGKSFRQKGSLTLHERIHT 34

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 41.7 bits (99), Expect = 7e-06
 Identities = 8/31 (25%), Positives = 15/31 (48%)

Query: 321 HQCSVCGKAFADITNMKVHMRIHTGEKKYVC 351
           ++C  CGK F+    +  H + H+G+     
Sbjct: 13  YECCECGKVFSRKDQLVSHQKTHSGQSGPSS 43

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 39.8 bits (94), Expect = 4e-05
 Identities = 11/34 (32%), Positives = 13/34 (38%)

Query: 339 HMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
                TGE  Y C  CG  F +   L  H   H+
Sbjct: 3   SGSSGTGENPYECCECGKVFSRKDQLVSHQKTHS 36

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 107

 Score = 42.6 bits (99), Expect = 2e-05
 Identities = 16/74 (21%), Positives = 25/74 (33%), Gaps = 4/74 (5%)

Query: 378 CSYCGNTYKNPKSLESHIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDM 437
           C  C     +     SH R     R  ++C  C   F   +  +EH +     +   C  
Sbjct: 19  CRLCNAKLSSLLEQGSHERL---CRNAAVCPYCSLRFFSPELKQEHES-KCEYKKLTCLE 74

Query: 438 CPSAFKLKKHLQQH 451
           C   FK    + +H
Sbjct: 75  CMRTFKSSFSIWRH 88

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 107

 Score = 42.2 bits (98), Expect = 2e-05
 Identities = 17/82 (20%), Positives = 27/82 (32%), Gaps = 2/82 (2%)

Query: 319 RDHQCSVCGKAFADITNMKVHMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHTAVNVVC 378
             +QC +C    + +     H R+       VC  C   F       +H        + C
Sbjct: 15  EVYQCRLCNAKLSSLLEQGSHERLC--RNAAVCPYCSLRFFSPELKQEHESKCEYKKLTC 72

Query: 379 SYCGNTYKNPKSLESHIRYAHT 400
             C  T+K+  S+  H    H 
Sbjct: 73  LECMRTFKSSFSIWRHQVEVHN 94

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 42

 Score = 38.8 bits (91), Expect = 8e-05
 Identities = 12/32 (37%), Positives = 15/32 (46%)

Query: 341 RIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
              +GEK Y C  C  +F     L QH  +HT
Sbjct: 3   SGSSGEKPYSCAECKETFSDNNRLVQHQKMHT 34

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 48

 Score = 38.8 bits (91), Expect = 1e-04
 Identities = 9/37 (24%), Positives = 15/37 (40%), Gaps = 2/37 (5%)

Query: 319 RDHQCSV--CGKAFADITNMKVHMRIHTGEKKYVCET 353
           +   C+   CG  F+    +  H R H+G K     +
Sbjct: 11  KPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPSS 47

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 48

 Score = 37.7 bits (88), Expect = 3e-04
 Identities = 11/36 (30%), Positives = 16/36 (44%), Gaps = 2/36 (5%)

Query: 339 HMRIHTGEKKYVC--ETCGASFVQWGSLNQHNLVHT 372
                TGEK + C    CG  F +   L++H   H+
Sbjct: 3   SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHS 38

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.3 bits (101), Expect = 1e-04
 Identities = 33/181 (18%), Positives = 57/181 (31%), Gaps = 53/181 (29%)

Query: 1   MVWTCCK--CIAKYTSRSHLSLHLLS-------------HSS--DADEIKQELSCEQCGC 43
           +V    K   + K    S +S+  +              H S  D   I +    +    
Sbjct: 407 VVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIP 466

Query: 44  -SLD--FHSALYTKDVYHCADCEQ---------VFLD-KFVLELHLKIEHKDNMFPKSHW 90
             LD  F+S +     +H  + E          VFLD +F   L  KI H       + W
Sbjct: 467 PYLDQYFYSHI----GHHLKNIEHPERMTLFRMVFLDFRF---LEQKIRHDS-----TAW 514

Query: 91  FVCKMCGHRLFMRLSDLRRHMQDYHCEFHFDVESCAVSRLQDI-TFPCEECKELCVLSKY 149
                  +    +L   + ++ D   ++           +  I  F   + +E  + SKY
Sbjct: 515 NASGSILN-TLQQLKFYKPYICDNDPKYE--------RLVNAILDF-LPKIEENLICSKY 564

Query: 150 C 150
            
Sbjct: 565 T 565

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A Length = 37

 Score = 36.5 bits (85), Expect = 5e-04
 Identities = 12/36 (33%), Positives = 14/36 (38%)

Query: 339 HMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHTAV 374
             R  TG K + C  C  SF +   L  H   H  V
Sbjct: 2   STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHMLV 37

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	459
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	100.0
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	100.0
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	99.97
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	99.96
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.94
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.93
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.9
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.89
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.89
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.89
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.87
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.87
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.87
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.87
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.86
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.85
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.78
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.77
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.77
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.76
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.76
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.75
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	99.75
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	99.74
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.73
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.73
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.72
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	99.72
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.71
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	99.71
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.7
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	99.7
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	99.69
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.68
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.65
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	99.64
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	99.62
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.61
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	99.6
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	99.59
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	99.58
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	99.58
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	99.57
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	99.57
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	99.57
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	99.55
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	99.55
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	99.55
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	99.55
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	99.54
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	99.54
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	99.53
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	99.52
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	99.51
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	99.5
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	99.5
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	99.49
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	99.49
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	99.48
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	99.47
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	99.46
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	99.45
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	99.45
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	99.44
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	99.44
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	99.42
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	99.41
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	99.4
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	99.38
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	99.37
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	99.35
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	99.35
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	99.34
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	99.33
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	99.33
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	99.32
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	99.29
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	99.28
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	99.28
2epa_A	72	Krueppel-like factor 10; transforming growth facto	99.23
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	99.22
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	99.22
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	99.2
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	99.19
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.17
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.17
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	99.17
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.17
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.16
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.16
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.16
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.16
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.16
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.16
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.16
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.15
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.15
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.15
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.15
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.15
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	99.15
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	99.15
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.15
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	99.14
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.14
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.14
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.14
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.14
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.14
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.14
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.14
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.14
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.14
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.14
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.14
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	99.14
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.14
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.14
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.14
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.14
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.14
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.14
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.14
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.13
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.13
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.12
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.12
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	99.12
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.11
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.11
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	99.1
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	99.1
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.09
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	99.09
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.08
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	99.03
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	99.03
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.03
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	99.02
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.02
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.02
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.02
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.01
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.01
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.01
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	99.01
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	99.01
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.01
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.0
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.0
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.0
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.0
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.0
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.0
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.0
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.99
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	98.99
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.99
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.99
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.99
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.99
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.99
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.98
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.98
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.98
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.98
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	98.97
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.97
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.97
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	98.97
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	98.95
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.95
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	98.94
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.94
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.94
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.94
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.94
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	98.94
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.93
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.93
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.93
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.92
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.92
2epa_A	72	Krueppel-like factor 10; transforming growth facto	98.91
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.91
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	98.91
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	98.9
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	98.89
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	98.88
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	98.87
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	98.87
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	98.86
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	98.86
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.86
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.85
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.85
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.85
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	98.85
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.85
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.85
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	98.85
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	98.85
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.84
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.84
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.84
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.84
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.84
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.84
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.84
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	98.84
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.84
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.83
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.83
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.83
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.83
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.83
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.83
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.83
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.83
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.83
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.83
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.82
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.82
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.82
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.82
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.82
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.82
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.82
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.82
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.82
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.81
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.81
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.81
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	98.81
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.81
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	98.8
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	98.8
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	98.8
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	98.8
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	98.79
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.77
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	98.77
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.76
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.74
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	98.74
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	98.73
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	98.73
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.73
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.73
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.71
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	98.69
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	98.67
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.66
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.66
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.66
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.66
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.66
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.65
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.65
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.65
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.65
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.65
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.64
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.64
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.64
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.64
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.64
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.63
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.63
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.63
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.63
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.63
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	98.63
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.62
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	98.62
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	98.62
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	98.62
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.62
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.62
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	98.61
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.61
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	98.61
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.61
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.61
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.6
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.6
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	98.6
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.59
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.59
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.59
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.59
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.58
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.57
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.57
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.57
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.57
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.57
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.57
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.56
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	98.56
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.56
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.55
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.55
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	98.55
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	98.54
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	98.54
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.53
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.53
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	98.52
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.52
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	98.52
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	98.51
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	98.5
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	98.49
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.46
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	98.46
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	98.44
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.41
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.4
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.4
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	98.39
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	98.39
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	98.38
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.37
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	98.36
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.35
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.34
1ard_A	29	Yeast transcription factor ADR1; transcription reg	98.34
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	98.33
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	98.33
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	98.32
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	98.28
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	98.28
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	98.28
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	98.27
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	98.25
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	98.25
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.24
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	98.24
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	98.23
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	98.23
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	98.23
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	98.22
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	98.22
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	97.53
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	98.21
1ard_A	29	Yeast transcription factor ADR1; transcription reg	98.21
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	97.52
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	98.19
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	98.18
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	98.17
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	98.17
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	98.16
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	98.14
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	98.12
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	98.11
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	98.1
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	98.1
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	97.38
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	98.09
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	98.09
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	98.07
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	98.07
1paa_A	30	Yeast transcription factor ADR1; transcription reg	98.07
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	98.06
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	97.31
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	97.28
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	97.96
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	97.18
1paa_A	30	Yeast transcription factor ADR1; transcription reg	97.94
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	97.87
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	97.69
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	97.51
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	97.5
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	96.67
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	96.38
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	96.1
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	95.76
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	95.23
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	95.18
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	95.14
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	95.07
3mjh_B	34	Early endosome antigen 1; protein-zinc finger comp	94.06
3mjh_B	34	Early endosome antigen 1; protein-zinc finger comp	92.97
1yk4_A	52	Rubredoxin, RD; electron transport; 0.69A {Pyrococ	88.93
6rxn_A	46	Rubredoxin; electron transfer(iron-sulfur protein)	88.44
4rxn_A	54	Rubredoxin; electron transfer(iron-sulfur protein)	87.75
2v3b_B	55	Rubredoxin 2, rubredoxin; alkane degradation, iron	86.95
2elu_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	86.87
1e8j_A	52	Rubredoxin; iron-sulfur-protein, zinc-substitution	86.18
2kn9_A	81	Rubredoxin; metalloprotein, ssgcid, structural gen	85.79
1fu9_A	36	U-shaped transcriptional cofactor; zinc-finger, be	84.62
3vk6_A	101	E3 ubiquitin-protein ligase hakai; HYB, phosphotyr	83.38
1dx8_A	70	Rubredoxin; electron transport, zinc-substitution;	82.26
2k5c_A	95	Uncharacterized protein PF0385; structural genomic	82.26
2k9h_A	57	Glycoprotein; hantavirus, zinc finger, CCHC, metal	81.73
2elu_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	81.38
1wjv_A	79	Cell growth regulating nucleolar protein LYAR; DNA	80.87
1fu9_A	36	U-shaped transcriptional cofactor; zinc-finger, be	80.78
1s24_A	87	Rubredoxin 2; electron transport; NMR {Pseudomonas	80.06

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=100.00  E-value=5.8e-38  Score=269.34  Aligned_cols=182  Identities=33%  Similarity=0.646  Sum_probs=142.0

Q ss_pred             HHHHHHHHhhccCCCCccccccccccCCHHHHHHHHHHHcCCCCccccccccccccChHHHHHHHHHcCCCCCccccccc
Q psy11588        276 YGGFTSHLDIHSGEKDHCCHICKKVFLRYRNLVCHIKAVHEKVRDHQCSVCGKAFADITNMKVHMRIHTGEKKYVCETCG  355 (459)
Q Consensus       276 ~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~  355 (459)
                      ...|..|+..+.++++|.|++|++.|.+...|..|++ .|.++++|.|++|++.|.+...|..|++.|.++++|.|+.|+
T Consensus         6 ~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~   84 (190)
T 2i13_A            6 SSSSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQR-THTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECG   84 (190)
T ss_dssp             -------------------------CCSSHHHHHGGG-CC---CCEECTTTCCEESSHHHHHHHHHHHHCCCCEECTTTC
T ss_pred             hccchhhhhhcCCCCCCcCCCCccccCCHHHHHHHHH-HcCCCCCccCCCcCchhCCHHHHHHHHHhcCCCCCccCcccC
Confidence            3567888888999999999999999999999999987 688888999999999999999999999999999999999999


Q ss_pred             ccccccchHHHHHhhhCCC-CcccCCCCCcCCChHHHHHHHHhhcCCCCccccccchhccCChHHHHHHHHHhCCCCCcc
Q psy11588        356 ASFVQWGSLNQHNLVHTAV-NVVCSYCGNTYKNPKSLESHIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFV  434 (459)
Q Consensus       356 ~~f~~~~~l~~H~~~h~~~-~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~  434 (459)
                      +.|.+...|..|++.|.+. +|.|++|++.|.+...|..|++ .|.++++|.|++|++.|.+...|..|+++|++++||.
T Consensus        85 ~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~  163 (190)
T 2i13_A           85 KSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQR-THTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYK  163 (190)
T ss_dssp             CEESCHHHHHHHHHHHHTCCCEECTTTCCEESSHHHHHHHHH-HHHCCCCEECTTTCCEESCHHHHHHHHHHHHCCCCEE
T ss_pred             CccCCHHHHHHHHHhcCCCCCCcCCCCCCccCCHHHHHHHHH-HhCCCCCeECCCCCcccCCHHHHHHHHHhcCCCCCeE
Confidence            9999999999999998876 8999999999999999999998 7888899999999999999999999999999999999


Q ss_pred             cCccccccCChHHHHHHHHHhcCCC
Q psy11588        435 CDMCPSAFKLKKHLQQHYKVHLKKD  459 (459)
Q Consensus       435 C~~C~~~f~~~~~l~~H~~~H~~~~  459 (459)
                      |++|++.|.+...|..|+++|+|++
T Consensus       164 C~~C~~~f~~~~~L~~H~~~H~~~k  188 (190)
T 2i13_A          164 CPECGKSFSRRDALNVHQRTHTGKK  188 (190)
T ss_dssp             CTTTCCEESSHHHHHHHHTTC----
T ss_pred             CCCCCCccCCHHHHHHHHHhcCCCC
Confidence            9999999999999999999999874

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=100.00  E-value=1.5e-36  Score=260.64  Aligned_cols=171  Identities=33%  Similarity=0.664  Sum_probs=146.0

Q ss_pred             CcccccccChhcccCHHHHHHHHhhccCCCCccccccccccCCHHHHHHHHHHHcCCCCccccccccccccChHHHHHHH
Q psy11588        261 KVNYKCPDCSAILLSYGGFTSHLDIHSGEKDHCCHICKKVFLRYRNLVCHIKAVHEKVRDHQCSVCGKAFADITNMKVHM  340 (459)
Q Consensus       261 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C~~~f~~~~~l~~H~  340 (459)
                      +.+|.|+.|++.|.+...|..|++.|.++++|.|++|++.|.+...|..|++ .|.++++|.|++|++.|.+...|..|+
T Consensus        19 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~C~~~f~~~~~l~~H~   97 (190)
T 2i13_A           19 EKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQR-THTGEKPYKCPECGKSFSQRANLRAHQ   97 (190)
T ss_dssp             ------------CCSSHHHHHGGGCC---CCEECTTTCCEESSHHHHHHHHH-HHHCCCCEECTTTCCEESCHHHHHHHH
T ss_pred             CCCCcCCCCccccCCHHHHHHHHHHcCCCCCccCCCcCchhCCHHHHHHHHH-hcCCCCCccCcccCCccCCHHHHHHHH
Confidence            6689999999999999999999999999999999999999999999999998 677889999999999999999999999


Q ss_pred             HHcCCCCCcccccccccccccchHHHHHhhhCCC-CcccCCCCCcCCChHHHHHHHHhhcCCCCccccccchhccCChHH
Q psy11588        341 RIHTGEKKYVCETCGASFVQWGSLNQHNLVHTAV-NVVCSYCGNTYKNPKSLESHIRYAHTIRQKSICDVCGKEFKMKKR  419 (459)
Q Consensus       341 ~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~-~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~C~~~f~~~~~  419 (459)
                      +.|+++++|.|+.|++.|.+...|..|+++|.+. +|.|++|++.|.+...|..|++ .|.+++||.|++|++.|.+...
T Consensus        98 ~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~-~H~~~~~~~C~~C~~~f~~~~~  176 (190)
T 2i13_A           98 RTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQR-THTGEKPYKCPECGKSFSRRDA  176 (190)
T ss_dssp             HHHHTCCCEECTTTCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHH-HHHCCCCEECTTTCCEESSHHH
T ss_pred             HhcCCCCCCcCCCCCCccCCHHHHHHHHHHhCCCCCeECCCCCcccCCHHHHHHHHH-hcCCCCCeECCCCCCccCCHHH
Confidence            9999999999999999999999999999999877 8999999999999999999999 7888999999999999999999


Q ss_pred             HHHHHHHhCCCCCc
Q psy11588        420 LKEHMAVHTTDRPF  433 (459)
Q Consensus       420 l~~H~~~H~~~~~~  433 (459)
                      |..|+++|+|++||
T Consensus       177 L~~H~~~H~~~k~~  190 (190)
T 2i13_A          177 LNVHQRTHTGKKTS  190 (190)
T ss_dssp             HHHHHTTC------
T ss_pred             HHHHHHhcCCCCCC
Confidence            99999999999986

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=99.97  E-value=1.8e-31  Score=228.84  Aligned_cols=165  Identities=27%  Similarity=0.520  Sum_probs=125.5

Q ss_pred             CCCccc--cccccccCCHHHHHHHHHHHcCCCCcccc--ccccccccChHHHHHHHHHcCCCCCcccc--cccccccccc
Q psy11588        289 EKDHCC--HICKKVFLRYRNLVCHIKAVHEKVRDHQC--SVCGKAFADITNMKVHMRIHTGEKKYVCE--TCGASFVQWG  362 (459)
Q Consensus       289 ~~~~~C--~~C~~~f~~~~~l~~H~~~~h~~~~~~~C--~~C~~~f~~~~~l~~H~~~h~~~~~~~C~--~C~~~f~~~~  362 (459)
                      .++|.|  +.|++.|.+...|..|++ .|.++++|.|  +.|++.|.+...|..|+++|.++++|.|+  .|++.|.+..
T Consensus        10 ~~~~~C~~~~C~~~f~~~~~L~~H~~-~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~   88 (190)
T 1tf6_A           10 YKRYICSFADCGAAYNKNWKLQAHLC-KHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKA   88 (190)
T ss_dssp             CCCCBCSSTTTCCBCSSHHHHHHHHH-HHHCCCSSCCSSTTCCCCCSSHHHHHHHHTTTTTCCCEECCSSSCCCEESCHH
T ss_pred             CcceeCCCCCCcchhCCHHHHHHHHH-hcCCCCCccCCCCCCChhhCCHHHHHHHHHHccCCCceeCCCCCCCCccCCHH
Confidence            455666  456666666666666665 4556666677  66777777777777777777777777777  6777777777


Q ss_pred             hHHHHH-hhhC-CC-Cccc--CCCCCcCCChHHHHHHHHhhcCCCCcccccc--chhccCChHHHHHHHHHhCCCCCccc
Q psy11588        363 SLNQHN-LVHT-AV-NVVC--SYCGNTYKNPKSLESHIRYAHTIRQKSICDV--CGKEFKMKKRLKEHMAVHTTDRPFVC  435 (459)
Q Consensus       363 ~l~~H~-~~h~-~~-~~~C--~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~--C~~~f~~~~~l~~H~~~H~~~~~~~C  435 (459)
                      .|..|+ +.|. +. +|.|  +.|++.|.+...|..|++ .|.+++||.|++  |++.|.+.+.|..|+++|++   |.|
T Consensus        89 ~l~~H~~~~h~~~~~~~~C~~~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~~~~C~k~F~~~~~L~~H~~~H~~---~~C  164 (190)
T 1tf6_A           89 NMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQF-SHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG---YPC  164 (190)
T ss_dssp             HHHHHHHTTSSTTTSCCEECSSSSCEECSSHHHHHHHHG-GGSSSCSSBCCSSSCCCBCSSHHHHHHHHTSSCS---CCC
T ss_pred             HHHHHHHHhcCCCcceeeCCCCCCccccCCHHHHHHHHH-HhCCCCCccCCCCCCCchhcCHHHHHHHHHHhCC---CcC
Confidence            777777 4452 22 6888  778888888888888888 788888999977  99999999999999999888   888


Q ss_pred             Cc---cccccCChHHHHHHHHHhcCC
Q psy11588        436 DM---CPSAFKLKKHLQQHYKVHLKK  458 (459)
Q Consensus       436 ~~---C~~~f~~~~~l~~H~~~H~~~  458 (459)
                      +.   |++.|.+...|..|+++|+|+
T Consensus       165 ~~~~~C~~~f~~~~~l~~H~~~h~~e  190 (190)
T 1tf6_A          165 KKDDSCSFVGKTWTLYLKHVAECHQD  190 (190)
T ss_dssp             CSTTTCCCCCSCHHHHHHHHTTCC--
T ss_pred             CCCCcCCCccccHHHHHHHHHhhcCC
Confidence            88   999999999999999988875

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=99.96  E-value=5.4e-30  Score=219.65  Aligned_cols=165  Identities=30%  Similarity=0.517  Sum_probs=154.1

Q ss_pred             Cccccc--ccChhcccCHHHHHHHHhhccCCCCccc--cccccccCCHHHHHHHHHHHcCCCCccccc--cccccccChH
Q psy11588        261 KVNYKC--PDCSAILLSYGGFTSHLDIHSGEKDHCC--HICKKVFLRYRNLVCHIKAVHEKVRDHQCS--VCGKAFADIT  334 (459)
Q Consensus       261 ~~~~~C--~~C~~~f~~~~~l~~H~~~h~~~~~~~C--~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~--~C~~~f~~~~  334 (459)
                      .++|.|  +.|++.|.+...|..|++.|.++++|.|  ++|++.|.+...|..|++ .|.++++|.|+  .|++.|.+..
T Consensus        10 ~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~~~C~~~f~~~~   88 (190)
T 1tf6_A           10 YKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSL-THTGEKNFTCDSDGCDLRFTTKA   88 (190)
T ss_dssp             CCCCBCSSTTTCCBCSSHHHHHHHHHHHHCCCSSCCSSTTCCCCCSSHHHHHHHHT-TTTTCCCEECCSSSCCCEESCHH
T ss_pred             CcceeCCCCCCcchhCCHHHHHHHHHhcCCCCCccCCCCCCChhhCCHHHHHHHHH-HccCCCceeCCCCCCCCccCCHH
Confidence            568999  7899999999999999999999999999  889999999999999998 78899999999  8999999999


Q ss_pred             HHHHHH-HHc-CCCCCccc--ccccccccccchHHHHHhhhCCC-CcccCC--CCCcCCChHHHHHHHHhhcCCCCcccc
Q psy11588        335 NMKVHM-RIH-TGEKKYVC--ETCGASFVQWGSLNQHNLVHTAV-NVVCSY--CGNTYKNPKSLESHIRYAHTIRQKSIC  407 (459)
Q Consensus       335 ~l~~H~-~~h-~~~~~~~C--~~C~~~f~~~~~l~~H~~~h~~~-~~~C~~--C~~~f~~~~~l~~H~~~~H~~~~~~~C  407 (459)
                      .|..|+ +.| .++.+|.|  +.|++.|.+...|..|+++|++. +|.|++  |++.|.+...|..|++ .|.+   |.|
T Consensus        89 ~l~~H~~~~h~~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~F~~~~~L~~H~~-~H~~---~~C  164 (190)
T 1tf6_A           89 NMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEK-VHAG---YPC  164 (190)
T ss_dssp             HHHHHHHTTSSTTTSCCEECSSSSCEECSSHHHHHHHHGGGSSSCSSBCCSSSCCCBCSSHHHHHHHHT-SSCS---CCC
T ss_pred             HHHHHHHHhcCCCcceeeCCCCCCccccCCHHHHHHHHHHhCCCCCccCCCCCCCchhcCHHHHHHHHH-HhCC---CcC
Confidence            999999 556 46789999  89999999999999999999987 899988  9999999999999999 7776   999


Q ss_pred             cc---chhccCChHHHHHHHHHhCCC
Q psy11588        408 DV---CGKEFKMKKRLKEHMAVHTTD  430 (459)
Q Consensus       408 ~~---C~~~f~~~~~l~~H~~~H~~~  430 (459)
                      +.   |++.|.+...|..|+++|+++
T Consensus       165 ~~~~~C~~~f~~~~~l~~H~~~h~~e  190 (190)
T 1tf6_A          165 KKDDSCSFVGKTWTLYLKHVAECHQD  190 (190)
T ss_dssp             CSTTTCCCCCSCHHHHHHHHTTCC--
T ss_pred             CCCCcCCCccccHHHHHHHHHhhcCC
Confidence            99   999999999999999999875

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.94  E-value=4.1e-27  Score=194.74  Aligned_cols=137  Identities=26%  Similarity=0.536  Sum_probs=109.7

Q ss_pred             ccccccccccccChHHHHHHHH---HcCCCCCcccc-----cccccccccchHHHHHhhhCCC-CcccCC--CCCcCCCh
Q psy11588        320 DHQCSVCGKAFADITNMKVHMR---IHTGEKKYVCE-----TCGASFVQWGSLNQHNLVHTAV-NVVCSY--CGNTYKNP  388 (459)
Q Consensus       320 ~~~C~~C~~~f~~~~~l~~H~~---~h~~~~~~~C~-----~C~~~f~~~~~l~~H~~~h~~~-~~~C~~--C~~~f~~~  388 (459)
                      +|.|+.|++.|.+...|..|++   +|.++++|.|+     .|++.|.+...|..|+++|.+. +|.|++  |++.|.+.
T Consensus         3 ~~~C~~C~~~f~~~~~L~~H~~~~h~h~~~~~~~C~~c~C~~c~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~   82 (155)
T 2gli_A            3 DCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRL   82 (155)
T ss_dssp             BCCBTTCCCBCSCHHHHHHHHHHHTSSSCSSCCCCCBTTCTTTTCCCSSHHHHHHHTHHHHCCCCCCCCSTTCCCCCSSH
T ss_pred             cCCcCCCccccCCHHHHHHHHHhhccCCCCcceeCCCCCccchhhhhhhHHHHHHHHHhcCCCCCccCCCCCCCCcccCH
Confidence            3445555555555555555544   34444555544     4458888888888888888776 788975  99999999


Q ss_pred             HHHHHHHHhhcCCCCcccccc--chhccCChHHHHHHH-HHhCCCCCcccCc--cccccCChHHHHHHHHHhcC
Q psy11588        389 KSLESHIRYAHTIRQKSICDV--CGKEFKMKKRLKEHM-AVHTTDRPFVCDM--CPSAFKLKKHLQQHYKVHLK  457 (459)
Q Consensus       389 ~~l~~H~~~~H~~~~~~~C~~--C~~~f~~~~~l~~H~-~~H~~~~~~~C~~--C~~~f~~~~~l~~H~~~H~~  457 (459)
                      ..|..|++ .|.++++|.|++  |++.|.+...|..|+ ++|.+++||.|++  |++.|.+.+.|..|+++|+|
T Consensus        83 ~~l~~H~~-~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~hhg  155 (155)
T 2gli_A           83 ENLKTHLR-SHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVHG  155 (155)
T ss_dssp             HHHHHHHH-HTTTCCCEECCSTTCCCEESSSSTTHHHHHHTTCSCCCEECCSTTTCCEESSHHHHHHHHHHSCC
T ss_pred             HHHHHHHH-HcCCCCCeeCCCCCCCCccCCHHHHHHHHHHhcCCCCCeeCCCCCCccccCCHHHHHHHHHhhcC
Confidence            99999998 788899999998  999999999999998 7999999999988  99999999999999999986

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.93  E-value=4.3e-26  Score=188.57  Aligned_cols=139  Identities=26%  Similarity=0.476  Sum_probs=102.8

Q ss_pred             CccccccccccCCHHHHHHHHHH--HcCCCCccccc-----cccccccChHHHHHHHHHcCCCCCccccc--cccccccc
Q psy11588        291 DHCCHICKKVFLRYRNLVCHIKA--VHEKVRDHQCS-----VCGKAFADITNMKVHMRIHTGEKKYVCET--CGASFVQW  361 (459)
Q Consensus       291 ~~~C~~C~~~f~~~~~l~~H~~~--~h~~~~~~~C~-----~C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~~~  361 (459)
                      ++.|+.|++.|.+...|..|++.  .|.++++|.|+     .|++.|.+...|..|+++|+++++|.|++  |++.|.+.
T Consensus         3 ~~~C~~C~~~f~~~~~L~~H~~~~h~h~~~~~~~C~~c~C~~c~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~   82 (155)
T 2gli_A            3 DCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRL   82 (155)
T ss_dssp             BCCBTTCCCBCSCHHHHHHHHHHHTSSSCSSCCCCCBTTCTTTTCCCSSHHHHHHHTHHHHCCCCCCCCSTTCCCCCSSH
T ss_pred             cCCcCCCccccCCHHHHHHHHHhhccCCCCcceeCCCCCccchhhhhhhHHHHHHHHHhcCCCCCccCCCCCCCCcccCH
Confidence            34445555555555555555442  23444444444     44577888888888888888888888874  88888888


Q ss_pred             chHHHHHhhhCCC-CcccCC--CCCcCCChHHHHHHHHhhcCCCCcccccc--chhccCChHHHHHHHHHhCC
Q psy11588        362 GSLNQHNLVHTAV-NVVCSY--CGNTYKNPKSLESHIRYAHTIRQKSICDV--CGKEFKMKKRLKEHMAVHTT  429 (459)
Q Consensus       362 ~~l~~H~~~h~~~-~~~C~~--C~~~f~~~~~l~~H~~~~H~~~~~~~C~~--C~~~f~~~~~l~~H~~~H~~  429 (459)
                      ..|..|+++|.+. +|.|++  |++.|.+...|..|++..|.++++|.|++  |++.|.+...|..|+++|+|
T Consensus        83 ~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~hhg  155 (155)
T 2gli_A           83 ENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVHG  155 (155)
T ss_dssp             HHHHHHHHHTTTCCCEECCSTTCCCEESSSSTTHHHHHHTTCSCCCEECCSTTTCCEESSHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHcCCCCCeeCCCCCCCCccCCHHHHHHHHHHhcCCCCCeeCCCCCCccccCCHHHHHHHHHhhcC
Confidence            8888888888766 788887  88888888888888855888888999988  99999999999999998875

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.90  E-value=9.2e-24  Score=167.47  Aligned_cols=114  Identities=32%  Similarity=0.557  Sum_probs=91.7

Q ss_pred             CCCCcccccccccccccchHHHHHhhhCCC-CcccCCCCCcCCChHHHHHHHHhh--cCCCCccccccchhccCChHHHH
Q psy11588        345 GEKKYVCETCGASFVQWGSLNQHNLVHTAV-NVVCSYCGNTYKNPKSLESHIRYA--HTIRQKSICDVCGKEFKMKKRLK  421 (459)
Q Consensus       345 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~-~~~C~~C~~~f~~~~~l~~H~~~~--H~~~~~~~C~~C~~~f~~~~~l~  421 (459)
                      ++++|.|++|++.|.+...|..|+++|.+. +|.|++|++.|.+...|..|++..  |.++++|.|++|++.|.+...|.
T Consensus         4 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~C~~C~~~f~~~~~l~   83 (124)
T 2dlq_A            4 GSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELR   83 (124)
T ss_dssp             CCSSCCCTTTCCCCSSHHHHHHHHHHHSSCCSCBCTTTCCBCSSHHHHHHHHHHCCCCSCCCCEECSSSCCEESSHHHHH
T ss_pred             CCCCCCCCCCCCcCCCHHHHHHHHHhCCCCCCeECCCCCchhcCHHHHHHHHhhhhcCCCCCCeECCCCCCccCCHHHHH
Confidence            456677777777777777777777766655 677777777777777777777742  56788999999999999999999


Q ss_pred             HHHHHhCCCCCcccCccccccCChHHHHHHHH-HhcCC
Q psy11588        422 EHMAVHTTDRPFVCDMCPSAFKLKKHLQQHYK-VHLKK  458 (459)
Q Consensus       422 ~H~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~-~H~~~  458 (459)
                      .|+++|++++||.|++|++.|.+...|..|++ .|.++
T Consensus        84 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~  121 (124)
T 2dlq_A           84 LHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSGP  121 (124)
T ss_dssp             HHHHHHSSSCSEECSSSCCEESSHHHHHHHHHHTSSCS
T ss_pred             HHHHHcCCCCCccCCCccchhCCHHHHHHHHHHHCCCC
Confidence            99999999999999999999999999999987 45554

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.89  E-value=9.9e-24  Score=165.97  Aligned_cols=111  Identities=26%  Similarity=0.599  Sum_probs=94.9

Q ss_pred             CCCCCccccc--ccccccccchHHHHHhhhCCC-CcccC--CCCCcCCChHHHHHHHHhhcCCCCccccccchhccCChH
Q psy11588        344 TGEKKYVCET--CGASFVQWGSLNQHNLVHTAV-NVVCS--YCGNTYKNPKSLESHIRYAHTIRQKSICDVCGKEFKMKK  418 (459)
Q Consensus       344 ~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~-~~~C~--~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~C~~~f~~~~  418 (459)
                      .++++|.|+.  |++.|.+...|..|+++|.+. +|.|+  .|++.|.+...|..|++ .|.++++|.|++|++.|.+..
T Consensus         2 ~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~C~~~f~~~~   80 (119)
T 2jp9_A            2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQR-RHTGVKPFQCKTCQRKFSRSD   80 (119)
T ss_dssp             CSSCCBCCCSTTSCCCBSCHHHHHHHHHHHHTTCCEECCSTTCCCEESSHHHHHHHHH-HHHCCCCEECTTTCCEESCHH
T ss_pred             CCCeeeeCCCCCCcchhCCHHHHHHHHHhhCCCCCccCCCCCCcCccCCHHHHHHHHH-HcCCCCCccCCccCchhCCHH
Confidence            3566777775  777777777777777777665 77887  68888888888888888 677788999999999999999


Q ss_pred             HHHHHHHHhCCCCCccc--CccccccCChHHHHHHHHHh
Q psy11588        419 RLKEHMAVHTTDRPFVC--DMCPSAFKLKKHLQQHYKVH  455 (459)
Q Consensus       419 ~l~~H~~~H~~~~~~~C--~~C~~~f~~~~~l~~H~~~H  455 (459)
                      .|..|+++|++++||.|  +.|++.|.+...|..|+++|
T Consensus        81 ~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~H  119 (119)
T 2jp9_A           81 HLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH  119 (119)
T ss_dssp             HHHHHHHHHHTCCCEECCSTTCCCEESSHHHHHHHHHTC
T ss_pred             HHHHHHHHhcCCCCeeCCCCCCccccCCHHHHHHHHhcC
Confidence            99999999999999999  89999999999999999886

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.89  E-value=9.6e-25  Score=173.44  Aligned_cols=105  Identities=24%  Similarity=0.394  Sum_probs=79.7

Q ss_pred             HHHcCCCCCcccccccccccccchHHHHHhhhCCC-CcccCCCCCcCCChHHHHHHHHhhcCCCCccccccchhccCChH
Q psy11588        340 MRIHTGEKKYVCETCGASFVQWGSLNQHNLVHTAV-NVVCSYCGNTYKNPKSLESHIRYAHTIRQKSICDVCGKEFKMKK  418 (459)
Q Consensus       340 ~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~-~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~C~~~f~~~~  418 (459)
                      ..+|.|+++|.|++|++.|.+...|..|+++|.++ +|.|++|++.|.+...|..|++ .|++++||.|++||+.|.+.+
T Consensus        14 ~~~h~Gek~y~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~-~H~~~k~~~C~~C~k~F~~~~   92 (133)
T 2lt7_A           14 ELIVDGRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEI-HHTGERRYQCLACGKSFINYQ   92 (133)
T ss_dssp             EEEETTEEEEEETTTCCEESCHHHHHHHHHHHHCCSCEECSSSSCEESSHHHHHHHHH-HHHTCCCEEESSSCCEESSHH
T ss_pred             eeecCCCcCeECCCCCCCcCCHHHHHHHHHHcCCCCCeeCCccCeecccccchhhhcc-ccCCCccccCCCCCCCcCCHH
Confidence            34566677777777777777777777777777665 6777777777777778888877 677788888888888888888


Q ss_pred             HHHHHHHHhCCCC------CcccCccccccCCh
Q psy11588        419 RLKEHMAVHTTDR------PFVCDMCPSAFKLK  445 (459)
Q Consensus       419 ~l~~H~~~H~~~~------~~~C~~C~~~f~~~  445 (459)
                      .|..|+++|++++      +|+|..|++.|...
T Consensus        93 ~L~~H~~~hh~~~p~~~~k~~~C~~C~k~~~~~  125 (133)
T 2lt7_A           93 FMSSHIKSVHSQDPSGDSKLYRLHPCRSLQIRQ  125 (133)
T ss_dssp             HHHHHHHHHTCCCTTSSSCCEEECCCCSSCCCC
T ss_pred             HHHHHhHHhcCCCCCCCCCCeecCCCCchhhhc
Confidence            8888888887654      58899999888644

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.89  E-value=1.8e-23  Score=165.70  Aligned_cols=113  Identities=29%  Similarity=0.606  Sum_probs=84.0

Q ss_pred             CCCcccc--cccccccccchHHHHHhhhCCCCcccCCCCCcCCChHHHHHHHHhhcCCCCcccccc--chhccCChHHHH
Q psy11588        346 EKKYVCE--TCGASFVQWGSLNQHNLVHTAVNVVCSYCGNTYKNPKSLESHIRYAHTIRQKSICDV--CGKEFKMKKRLK  421 (459)
Q Consensus       346 ~~~~~C~--~C~~~f~~~~~l~~H~~~h~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~--C~~~f~~~~~l~  421 (459)
                      +++|.|+  .|++.|.+...|..|+++|...+|.|++|++.|.+...|..|++ .|.++++|.|++  |++.|.+...|.
T Consensus         3 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~C~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~~~C~~~f~~~~~l~   81 (124)
T 1ubd_C            3 PRTIACPHKGCTKMFRDNSAMRKHLHTHGPRVHVCAECGKAFVESSKLKRHQL-VHTGEKPFQCTFEGCGKRFSLDFNLR   81 (124)
T ss_dssp             --CEECCSTTCCCEESSHHHHHHHHGGGSCCCEECTTTCCEESSHHHHHHHGG-GTSCCCCEECCSTTCCCEESCHHHHH
T ss_pred             CCcccCCCCCCcCccCCHHHHHHHHHHcCCCCeECCCCCchhCCHHHHHHHHH-HcCCCCCeeCCCCCCcCccCCHHHHH
Confidence            4567776  67777777777777777774447777777777777777778877 677777888875  888888888888


Q ss_pred             HHHHHhCCCCCcccC--ccccccCChHHHHHHHHHhcCCC
Q psy11588        422 EHMAVHTTDRPFVCD--MCPSAFKLKKHLQQHYKVHLKKD  459 (459)
Q Consensus       422 ~H~~~H~~~~~~~C~--~C~~~f~~~~~l~~H~~~H~~~~  459 (459)
                      .|+++|+++++|.|+  .|++.|.+...|..|+++|++++
T Consensus        82 ~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~H~~~k  121 (124)
T 1ubd_C           82 THVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAK  121 (124)
T ss_dssp             HHHHHHHCCCCCCCCSTTCCCCCSSTTTTHHHHHHHC---
T ss_pred             HHHHHhCCCCceECCCCCCCCccCCHHHHHHHHHHHcccc
Confidence            888888888888885  48888888888888888887653

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.87  E-value=2.2e-22  Score=159.50  Aligned_cols=113  Identities=31%  Similarity=0.593  Sum_probs=88.4

Q ss_pred             CCCccccccccccccChHHHHHHHHHcCCCCCcccccccccccccchHHHHHhhh---CCC-CcccCCCCCcCCChHHHH
Q psy11588        317 KVRDHQCSVCGKAFADITNMKVHMRIHTGEKKYVCETCGASFVQWGSLNQHNLVH---TAV-NVVCSYCGNTYKNPKSLE  392 (459)
Q Consensus       317 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h---~~~-~~~C~~C~~~f~~~~~l~  392 (459)
                      ++++|.|++|++.|.+...|..|+++|.++++|.|+.|++.|.+...|..|+..+   .+. +|.|++|++.|.+...|.
T Consensus         4 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~C~~C~~~f~~~~~l~   83 (124)
T 2dlq_A            4 GSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELR   83 (124)
T ss_dssp             CCSSCCCTTTCCCCSSHHHHHHHHHHHSSCCSCBCTTTCCBCSSHHHHHHHHHHCCCCSCCCCEECSSSCCEESSHHHHH
T ss_pred             CCCCCCCCCCCCcCCCHHHHHHHHHhCCCCCCeECCCCCchhcCHHHHHHHHhhhhcCCCCCCeECCCCCCccCCHHHHH
Confidence            4566777777777777777777777777777777777777777777777777753   333 788888888888888888


Q ss_pred             HHHHhhcCCCCccccccchhccCChHHHHHHHH-HhCCC
Q psy11588        393 SHIRYAHTIRQKSICDVCGKEFKMKKRLKEHMA-VHTTD  430 (459)
Q Consensus       393 ~H~~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~-~H~~~  430 (459)
                      .|++ .|.+++||.|++|++.|.+...|..|++ .|.++
T Consensus        84 ~H~~-~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~  121 (124)
T 2dlq_A           84 LHMV-SHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSGP  121 (124)
T ss_dssp             HHHH-HHSSSCSEECSSSCCEESSHHHHHHHHHHTSSCS
T ss_pred             HHHH-HcCCCCCccCCCccchhCCHHHHHHHHHHHCCCC
Confidence            8887 7778888889889999988888999987 45554

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.87  E-value=9.7e-23  Score=161.48  Aligned_cols=115  Identities=33%  Similarity=0.677  Sum_probs=93.1

Q ss_pred             CCccccc--cccccccChHHHHHHHHHcCCCCCcccccccccccccchHHHHHhhhCCC-CcccCC--CCCcCCChHHHH
Q psy11588        318 VRDHQCS--VCGKAFADITNMKVHMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHTAV-NVVCSY--CGNTYKNPKSLE  392 (459)
Q Consensus       318 ~~~~~C~--~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~-~~~C~~--C~~~f~~~~~l~  392 (459)
                      .++|.|+  .|++.|.+...|..|+++| ++++|.|++|++.|.+...|..|+++|.+. +|.|++  |++.|.+...|.
T Consensus         3 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h-~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~   81 (124)
T 1ubd_C            3 PRTIACPHKGCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLR   81 (124)
T ss_dssp             --CEECCSTTCCCEESSHHHHHHHHGGG-SCCCEECTTTCCEESSHHHHHHHGGGTSCCCCEECCSTTCCCEESCHHHHH
T ss_pred             CCcccCCCCCCcCccCCHHHHHHHHHHc-CCCCeECCCCCchhCCHHHHHHHHHHcCCCCCeeCCCCCCcCccCCHHHHH
Confidence            4568887  7888888888888888887 778888888888888888888888888776 788875  999999999999


Q ss_pred             HHHHhhcCCCCccccc--cchhccCChHHHHHHHHHhCCCCCcc
Q psy11588        393 SHIRYAHTIRQKSICD--VCGKEFKMKKRLKEHMAVHTTDRPFV  434 (459)
Q Consensus       393 ~H~~~~H~~~~~~~C~--~C~~~f~~~~~l~~H~~~H~~~~~~~  434 (459)
                      .|++ .|.++++|.|+  .|++.|.+...|..|+++|+++++++
T Consensus        82 ~H~~-~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~H~~~k~~q  124 (124)
T 1ubd_C           82 THVR-IHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKNNQ  124 (124)
T ss_dssp             HHHH-HHHCCCCCCCCSTTCCCCCSSTTTTHHHHHHHC------
T ss_pred             HHHH-HhCCCCceECCCCCCCCccCCHHHHHHHHHHHcccccCC
Confidence            9998 78888999996  49999999999999999999998764

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.87  E-value=1.2e-22  Score=167.79  Aligned_cols=116  Identities=28%  Similarity=0.527  Sum_probs=73.6

Q ss_pred             ccccccccccccChHHHHHHHHH-cCCCCC--------cccccccccccccchHHHHHhhhCCC-CcccCC--CCCcCCC
Q psy11588        320 DHQCSVCGKAFADITNMKVHMRI-HTGEKK--------YVCETCGASFVQWGSLNQHNLVHTAV-NVVCSY--CGNTYKN  387 (459)
Q Consensus       320 ~~~C~~C~~~f~~~~~l~~H~~~-h~~~~~--------~~C~~C~~~f~~~~~l~~H~~~h~~~-~~~C~~--C~~~f~~  387 (459)
                      .|.|++|++.|.+...|..|++. |.++.+        |.|++|++.|.+...|..|+++|.+. +|.|++  |++.|.+
T Consensus        25 ~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~  104 (155)
T 2rpc_A           25 SRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFAR  104 (155)
T ss_dssp             SSSCCCCCCCBSSHHHHHHHHHTTTSCCTTCSSCCCCBTTCTTSSCCCSSHHHHHHHTHHHHCCCSEECSCTTTCCEESC
T ss_pred             ccccccCCcccCCHHHHHHHHHhhcCCCcccCCccccccCCCCcccccCCHHHHHHHHHhcCCCCcccCCcCCCCCccCC
Confidence            34444444444444444444443 322222        56666666666666666666666554 566666  7777777


Q ss_pred             hHHHHHHHHhhcCCCCcccccc--chhccCChHHHHHHHHHhCCCCCcccC
Q psy11588        388 PKSLESHIRYAHTIRQKSICDV--CGKEFKMKKRLKEHMAVHTTDRPFVCD  436 (459)
Q Consensus       388 ~~~l~~H~~~~H~~~~~~~C~~--C~~~f~~~~~l~~H~~~H~~~~~~~C~  436 (459)
                      ...|..|++ .|.++++|.|++  |++.|.+...|..|+++|++++||.|+
T Consensus       105 ~~~L~~H~~-~h~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~~c~  154 (155)
T 2rpc_A          105 SENLKIHKR-THTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDKSGPSS  154 (155)
T ss_dssp             HHHHHHHHT-TTCSSCSBCCSSTTCCCCBSSHHHHHHSSTTTTSCCCSCSC
T ss_pred             HHHHHHHHH-hhCCCCCccCCCCCCCCccCCHHHHHHHHHHhcCCCCCCCC
Confidence            777777776 666777777776  777777777777777777777777775

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.87  E-value=2.1e-22  Score=158.34  Aligned_cols=110  Identities=31%  Similarity=0.654  Sum_probs=85.2

Q ss_pred             CCCcccccc--ccccccChHHHHHHHHHcCCCCCcccc--cccccccccchHHHHHhhhCCC-CcccCCCCCcCCChHHH
Q psy11588        317 KVRDHQCSV--CGKAFADITNMKVHMRIHTGEKKYVCE--TCGASFVQWGSLNQHNLVHTAV-NVVCSYCGNTYKNPKSL  391 (459)
Q Consensus       317 ~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~C~--~C~~~f~~~~~l~~H~~~h~~~-~~~C~~C~~~f~~~~~l  391 (459)
                      ++++|.|++  |++.|.+...|..|++.|.++++|.|+  .|++.|.+...|..|+++|.+. +|.|++|++.|.+...|
T Consensus         3 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l   82 (119)
T 2jp9_A            3 EKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHL   82 (119)
T ss_dssp             SSCCBCCCSTTSCCCBSCHHHHHHHHHHHHTTCCEECCSTTCCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHH
T ss_pred             CCeeeeCCCCCCcchhCCHHHHHHHHHhhCCCCCccCCCCCCcCccCCHHHHHHHHHHcCCCCCccCCccCchhCCHHHH
Confidence            456677775  777777777777777777777777777  5777777777777777777665 67888888888888888


Q ss_pred             HHHHHhhcCCCCcccc--ccchhccCChHHHHHHHHHh
Q psy11588        392 ESHIRYAHTIRQKSIC--DVCGKEFKMKKRLKEHMAVH  427 (459)
Q Consensus       392 ~~H~~~~H~~~~~~~C--~~C~~~f~~~~~l~~H~~~H  427 (459)
                      ..|++ .|.++++|.|  +.|++.|.+...|..|+++|
T Consensus        83 ~~H~~-~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~H  119 (119)
T 2jp9_A           83 KTHTR-THTGEKPFSCRWPSCQKKFARSDELVRHHNMH  119 (119)
T ss_dssp             HHHHH-HHHTCCCEECCSTTCCCEESSHHHHHHHHHTC
T ss_pred             HHHHH-HhcCCCCeeCCCCCCccccCCHHHHHHHHhcC
Confidence            88887 6777788888  78888888888888888776

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.86  E-value=2.9e-22  Score=165.39  Aligned_cols=115  Identities=28%  Similarity=0.502  Sum_probs=107.3

Q ss_pred             CCCCCcccccccccccccchHHHHHhh-hCCCC---------cccCCCCCcCCChHHHHHHHHhhcCCCCcccccc--ch
Q psy11588        344 TGEKKYVCETCGASFVQWGSLNQHNLV-HTAVN---------VVCSYCGNTYKNPKSLESHIRYAHTIRQKSICDV--CG  411 (459)
Q Consensus       344 ~~~~~~~C~~C~~~f~~~~~l~~H~~~-h~~~~---------~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~--C~  411 (459)
                      ..+.+|.|+.|++.|.+...|..|++. |.+.+         |.|++|++.|.+...|..|++ .|.++++|.|++  |+
T Consensus        21 ~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~~~C~   99 (155)
T 2rpc_A           21 EAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIR-VHTGEKPFPCPFPGCG   99 (155)
T ss_dssp             TTCCSSSCCCCCCCBSSHHHHHHHHHTTTSCCTTCSSCCCCBTTCTTSSCCCSSHHHHHHHTH-HHHCCCSEECSCTTTC
T ss_pred             hhhcccccccCCcccCCHHHHHHHHHhhcCCCcccCCccccccCCCCcccccCCHHHHHHHHH-hcCCCCcccCCcCCCC
Confidence            356789999999999999999999997 66552         789999999999999999999 788899999998  99


Q ss_pred             hccCChHHHHHHHHHhCCCCCcccCc--cccccCChHHHHHHHHHhcCCC
Q psy11588        412 KEFKMKKRLKEHMAVHTTDRPFVCDM--CPSAFKLKKHLQQHYKVHLKKD  459 (459)
Q Consensus       412 ~~f~~~~~l~~H~~~H~~~~~~~C~~--C~~~f~~~~~l~~H~~~H~~~~  459 (459)
                      +.|.+...|..|+++|++++||.|++  |++.|.+...|..|+++|++++
T Consensus       100 ~~f~~~~~L~~H~~~h~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k  149 (155)
T 2rpc_A          100 KIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDK  149 (155)
T ss_dssp             CEESCHHHHHHHHTTTCSSCSBCCSSTTCCCCBSSHHHHHHSSTTTTSCC
T ss_pred             CccCCHHHHHHHHHhhCCCCCccCCCCCCCCccCCHHHHHHHHHHhcCCC
Confidence            99999999999999999999999997  9999999999999999999874

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.85  E-value=1.2e-21  Score=155.57  Aligned_cols=107  Identities=27%  Similarity=0.445  Sum_probs=85.8

Q ss_pred             ceeeecCCCcccccccChhcccCHHHHHHHHhhccCCCCccccccccccCCHHHHHHHHHHHcCCCCccccccccccccC
Q psy11588        253 KTVIHVNKKVNYKCPDCSAILLSYGGFTSHLDIHSGEKDHCCHICKKVFLRYRNLVCHIKAVHEKVRDHQCSVCGKAFAD  332 (459)
Q Consensus       253 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C~~~f~~  332 (459)
                      +..++.| +++|.|++|++.|.+...|..|+++|.++++|.|++|++.|.+...|..|++ .|.++++|.|++||+.|.+
T Consensus        13 ~~~~h~G-ek~y~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~-~H~~~k~~~C~~C~k~F~~   90 (133)
T 2lt7_A           13 YELIVDG-RVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEI-HHTGERRYQCLACGKSFIN   90 (133)
T ss_dssp             EEEEETT-EEEEEETTTCCEESCHHHHHHHHHHHHCCSCEECSSSSCEESSHHHHHHHHH-HHHTCCCEEESSSCCEESS
T ss_pred             ceeecCC-CcCeECCCCCCCcCCHHHHHHHHHHcCCCCCeeCCccCeecccccchhhhcc-ccCCCccccCCCCCCCcCC
Confidence            3445555 7788899999999988899999888888888888888888888888888887 6888888888888888888


Q ss_pred             hHHHHHHHHHcCCCCC------ccccccccccccc
Q psy11588        333 ITNMKVHMRIHTGEKK------YVCETCGASFVQW  361 (459)
Q Consensus       333 ~~~l~~H~~~h~~~~~------~~C~~C~~~f~~~  361 (459)
                      ...|..|+++|++++|      |.|..|++.|...
T Consensus        91 ~~~L~~H~~~hh~~~p~~~~k~~~C~~C~k~~~~~  125 (133)
T 2lt7_A           91 YQFMSSHIKSVHSQDPSGDSKLYRLHPCRSLQIRQ  125 (133)
T ss_dssp             HHHHHHHHHHHTCCCTTSSSCCEEECCCCSSCCCC
T ss_pred             HHHHHHHhHHhcCCCCCCCCCCeecCCCCchhhhc
Confidence            8888888888877654      5555665555443

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.78  E-value=1.4e-19  Score=131.79  Aligned_cols=82  Identities=30%  Similarity=0.692  Sum_probs=77.0

Q ss_pred             CcccCCCCCcCCChHHHHHHHHhhcCCCCccccccchhccCChHHHHHHHHHhCCCCCcccCccccccCChHHHHHHHHH
Q psy11588        375 NVVCSYCGNTYKNPKSLESHIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKV  454 (459)
Q Consensus       375 ~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~  454 (459)
                      +|.|++|++.|.+...|..|++ .|.++++|.|++|++.|.+...|..|+++|++++||.|++|++.|.+...|..|+++
T Consensus         1 ~~~C~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~   79 (82)
T 2kmk_A            1 SFDCKICGKSFKRSSTLSTHLL-IHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSRK   79 (82)
T ss_dssp             CEECSSSCCEESSHHHHHHHHH-HHHTCCCEECSSSCCEESSHHHHHHHHHHHHTCCCEECTTTSCEESSHHHHHHHHHH
T ss_pred             CccCCCCcccccCchhHHHHHH-HcCCCCCeeCCcCChhhCCHHHHHHHHHHhcCCCCCcCCCcchhhCChHHHHHHHHh
Confidence            4789999999999999999998 688889999999999999999999999999999999999999999999999999999


Q ss_pred             hcC
Q psy11588        455 HLK  457 (459)
Q Consensus       455 H~~  457 (459)
                      |+|
T Consensus        80 H~g   82 (82)
T 2kmk_A           80 HTG   82 (82)
T ss_dssp             HC-
T ss_pred             hCC
Confidence            976

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.77  E-value=4.8e-19  Score=133.12  Aligned_cols=83  Identities=28%  Similarity=0.632  Sum_probs=66.1

Q ss_pred             CcccCCCCCcCCChHHHHHHHHhhcCCCCccccccchhccCChHHHHHHHHHhCCCCCcccCccccccCChHHHHHHHHH
Q psy11588        375 NVVCSYCGNTYKNPKSLESHIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKV  454 (459)
Q Consensus       375 ~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~  454 (459)
                      +|.|++|++.|.+...|..|++ .|.++++|.|++|++.|.+...|..|+++|+++++|.|++|++.|.+...|..|+++
T Consensus         8 ~~~C~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~   86 (96)
T 2dmd_A            8 PHKCEVCGKCFSRKDKLKTHMR-CHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVHLRS   86 (96)
T ss_dssp             CCCBTTTTBCCCCHHHHHHHGG-GCCCCCSEECSSSCCEESSHHHHHHHHHHSCCCCCEECSSSSCEESSHHHHHHHHTT
T ss_pred             CeECCCCCCccCCHHHHHHHHH-hcCCCCCEeCCCCCCccCCHHHHHHHHHHhCCCCCccCCCCCCccCCHHHHHHHHHH
Confidence            6777777777777777777777 677777788888888888888888888888888888888888888888888888888


Q ss_pred             hcCC
Q psy11588        455 HLKK  458 (459)
Q Consensus       455 H~~~  458 (459)
                      |+++
T Consensus        87 h~~~   90 (96)
T 2dmd_A           87 HTGD   90 (96)
T ss_dssp             CCSC
T ss_pred             hcCC
Confidence            8765

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.77  E-value=1.2e-18  Score=133.62  Aligned_cols=83  Identities=29%  Similarity=0.738  Sum_probs=45.4

Q ss_pred             CcccCCCCCcCCChHHHHHHHHhhcCCCCccccccchhccCChHHHHHHHHHhCCCCCcccCccccccCChHHHHHHHHH
Q psy11588        375 NVVCSYCGNTYKNPKSLESHIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKV  454 (459)
Q Consensus       375 ~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~  454 (459)
                      +|.|++|++.|.+...|..|++ .|.++++|.|++|++.|.+...|..|+++|+++++|.|++|++.|.+...|..|+++
T Consensus        17 ~~~C~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~   95 (106)
T 2ee8_A           17 EFICKFCGRHFTKSYNLLIHER-THTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAVHKTL   95 (106)
T ss_dssp             CCBCSSSCCBCSSHHHHHHHHH-HHCCSCCCBCSSSCCBCSCHHHHHHHGGGSCCCCTTSCSSSCCCCSSHHHHHHHHHH
T ss_pred             CeECCCCCCccCCHHHHHHHHH-HcCCCCCcCCCCccchhCCHHHHHHHHHHhCCCCCeECCCcCCcccCHHHHHHHHHH
Confidence            4555555555555555555555 444455555555555555555555555555555555555555555555555555555


Q ss_pred             hcCC
Q psy11588        455 HLKK  458 (459)
Q Consensus       455 H~~~  458 (459)
                      |+++
T Consensus        96 H~~~   99 (106)
T 2ee8_A           96 HMQT   99 (106)
T ss_dssp             TTSC
T ss_pred             hCCC
Confidence            5543

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.76  E-value=4.5e-19  Score=131.55  Aligned_cols=84  Identities=31%  Similarity=0.705  Sum_probs=75.5

Q ss_pred             CcccC--CCCCcCCChHHHHHHHHhhcCCCCccccccchhccCChHHHHHHHHHhCCCCCcccCccccccCChHHHHHHH
Q psy11588        375 NVVCS--YCGNTYKNPKSLESHIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMCPSAFKLKKHLQQHY  452 (459)
Q Consensus       375 ~~~C~--~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~~C~~~f~~~~~l~~H~  452 (459)
                      +|.|+  .|++.|.+...|..|++ .|.++++|.|++|++.|.+...|..|+++|++++||.|++|++.|.+...|..|+
T Consensus         4 ~~~C~~~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~   82 (90)
T 1a1h_A            4 PYACPVESCDRRFSQSGSLTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHT   82 (90)
T ss_dssp             CEECCSSSCCCEESSHHHHHHHHH-HHHCCCCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEESSHHHHHHHH
T ss_pred             ceECCCCCCCCccCCHHHHHHHHH-HhCCCCCccCCCCCcccCCHHHHHHHHHHcCCCCCccCCCCCchhCCHHHHHHHH
Confidence            68887  59999999999999988 7778889999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCC
Q psy11588        453 KVHLKKD  459 (459)
Q Consensus       453 ~~H~~~~  459 (459)
                      ++|++++
T Consensus        83 ~~H~~~k   89 (90)
T 1a1h_A           83 KIHLRQK   89 (90)
T ss_dssp             GGGGC--
T ss_pred             HHhcccC
Confidence            9999864

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.76  E-value=3.4e-19  Score=119.02  Aligned_cols=58  Identities=29%  Similarity=0.613  Sum_probs=55.5

Q ss_pred             CCccccccchhccCChHHHHHHHHHhCCCCCcccCccccccCChHHHHHHHHHhcCCC
Q psy11588        402 RQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVHLKKD  459 (459)
Q Consensus       402 ~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~  459 (459)
                      ++||+|++||+.|...+.|..|+++|++++||.|++||++|.+.+.|..|+++|+|++
T Consensus         2 EKpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~C~k~F~~~~~L~~H~~~Htgep   59 (60)
T 4gzn_C            2 ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQNKP   59 (60)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHHHHHTCCCEECTTTCCEESSHHHHHHHGGGGSCC-
T ss_pred             CCCccCCCCCCEeCCHHHHHHHHHHhCCCcCeECCCCCCCcCCHHHHHHHhCccCCCC
Confidence            6899999999999999999999999999999999999999999999999999999974

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.75  E-value=2.8e-18  Score=131.51  Aligned_cols=90  Identities=24%  Similarity=0.509  Sum_probs=73.0

Q ss_pred             CCCCcccccccccccccchHHHHHhhhCCC-CcccCCCCCcCCChHHHHHHHHhhcCCCCccccccchhccCChHHHHHH
Q psy11588        345 GEKKYVCETCGASFVQWGSLNQHNLVHTAV-NVVCSYCGNTYKNPKSLESHIRYAHTIRQKSICDVCGKEFKMKKRLKEH  423 (459)
Q Consensus       345 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~-~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~C~~~f~~~~~l~~H  423 (459)
                      ++++|.|++|++.|.+...|..|++.|.+. +|.|++|++.|.+...|..|++ .|.++++|.|++|++.|.+...|..|
T Consensus        14 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~C~~~f~~~~~L~~H   92 (106)
T 2ee8_A           14 TKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRY-IHSKEKPFKCQECGKGFCQSRTLAVH   92 (106)
T ss_dssp             CCCCCBCSSSCCBCSSHHHHHHHHHHHCCSCCCBCSSSCCBCSCHHHHHHHGG-GSCCCCTTSCSSSCCCCSSHHHHHHH
T ss_pred             CCcCeECCCCCCccCCHHHHHHHHHHcCCCCCcCCCCccchhCCHHHHHHHHH-HhCCCCCeECCCcCCcccCHHHHHHH
Confidence            456677777777777777777777777665 6788888888888888888887 78888889999999999999999999


Q ss_pred             HHHhCCCCCccc
Q psy11588        424 MAVHTTDRPFVC  435 (459)
Q Consensus       424 ~~~H~~~~~~~C  435 (459)
                      +++|++++||..
T Consensus        93 ~~~H~~~~~~~~  104 (106)
T 2ee8_A           93 KTLHMQTSSPTA  104 (106)
T ss_dssp             HHHTTSCCCCCC
T ss_pred             HHHhCCCCCCcC
Confidence            999999988864

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.75  E-value=7.4e-19  Score=134.88  Aligned_cols=94  Identities=20%  Similarity=0.351  Sum_probs=80.6

Q ss_pred             HHHcCCCCCcccccccccccccchHHHHHhhhCCCCcccCCCCCcCCChHHHHHHHHhhcCCCCccccccchhccCChHH
Q psy11588        340 MRIHTGEKKYVCETCGASFVQWGSLNQHNLVHTAVNVVCSYCGNTYKNPKSLESHIRYAHTIRQKSICDVCGKEFKMKKR  419 (459)
Q Consensus       340 ~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~C~~~f~~~~~  419 (459)
                      ++.|.++++|.|++|++.|.+...|..|+++|. .+|.|++|++.|.+...|..|++  |.++++|.|++|++.|.+...
T Consensus         8 ~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H~-~~~~C~~C~~~f~~~~~l~~H~~--H~~~~~~~C~~C~~~f~~~~~   84 (107)
T 1wjp_A            8 ASPVENKEVYQCRLCNAKLSSLLEQGSHERLCR-NAAVCPYCSLRFFSPELKQEHES--KCEYKKLTCLECMRTFKSSFS   84 (107)
T ss_dssp             CCCCCCCCCCBCTTTCCBCSSHHHHHHHHHHHH-HSBCCTTTCCCBSSHHHHHHHHH--HCSTGGGEEGGGTEECSSHHH
T ss_pred             CcccCCCcCeECCCCCCccCCHHHHHHHHHHCC-CCccCCCCCCccCCHHHHHHHHH--cCCCCCccCccccchhCCHHH
Confidence            456778888888888888888888888888873 47899999999999999999983  888899999999999999999


Q ss_pred             HHHHHH-HhCCCCCcccC
Q psy11588        420 LKEHMA-VHTTDRPFVCD  436 (459)
Q Consensus       420 l~~H~~-~H~~~~~~~C~  436 (459)
                      |..|++ +|.++++|.|.
T Consensus        85 L~~H~~~~H~~~~~~~~~  102 (107)
T 1wjp_A           85 IWRHQVEVHNQNNMAPTS  102 (107)
T ss_dssp             HHHHHHHTSCCCCCCCCC
T ss_pred             HHHHHHHHcCCCCCCCCC
Confidence            999997 88899998875

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.74  E-value=1.4e-19  Score=141.06  Aligned_cols=93  Identities=18%  Similarity=0.265  Sum_probs=50.8

Q ss_pred             hHHHHHhhhCCC-CcccCCCCCcCCChHHHHHHHHhh--cCCCCcc-ccccchhcc--CChHHHHHHHHHhCCCCCcccC
Q psy11588        363 SLNQHNLVHTAV-NVVCSYCGNTYKNPKSLESHIRYA--HTIRQKS-ICDVCGKEF--KMKKRLKEHMAVHTTDRPFVCD  436 (459)
Q Consensus       363 ~l~~H~~~h~~~-~~~C~~C~~~f~~~~~l~~H~~~~--H~~~~~~-~C~~C~~~f--~~~~~l~~H~~~H~~~~~~~C~  436 (459)
                      .|..|+++|.+. +|.|++|++.|.+...|..|++ .  |.+.+++ .|++|++.|  .....|..|+++|++++||.|+
T Consensus         6 ~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~-~~~h~~~~~~~~C~~C~~~f~f~~~~~l~~H~~~H~~~~~~~C~   84 (115)
T 2dmi_A            6 SGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMN-ETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQKVLKCM   84 (115)
T ss_dssp             CCCCCCCCCCCCCSEEBSSSSCEESSHHHHHHHHH-HTCCCBCSCCCCCCCCCSCCSSCCCCCCCCCCCSCCCCSSCBCS
T ss_pred             hhhhheeeeCCCCCEECCccCchhcCHHHHHHHHH-HhCccccCCCccCCCCCcccccccHHHHHHHhhccCCCcceECC
Confidence            344444444443 4555555555555555555554 2  3333333 366666655  5566666666666666666666


Q ss_pred             ccccccCChHHHHHHHHHhc
Q psy11588        437 MCPSAFKLKKHLQQHYKVHL  456 (459)
Q Consensus       437 ~C~~~f~~~~~l~~H~~~H~  456 (459)
                      +|++.|.+...|..|+++|+
T Consensus        85 ~C~k~f~~~~~L~~H~~~hh  104 (115)
T 2dmi_A           85 YCGHSFESLQDLSVHMIKTK  104 (115)
T ss_dssp             SSCCBCSSHHHHHHHHHHTT
T ss_pred             CCCCccCCHHHHHHHHHHhC
Confidence            66666666666666666554

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.73  E-value=4.4e-18  Score=127.80  Aligned_cols=89  Identities=27%  Similarity=0.470  Sum_probs=73.1

Q ss_pred             CCCCCcccccccccccccchHHHHHhhhCCC-CcccCCCCCcCCChHHHHHHHHhhcCCCCccccccchhccCChHHHHH
Q psy11588        344 TGEKKYVCETCGASFVQWGSLNQHNLVHTAV-NVVCSYCGNTYKNPKSLESHIRYAHTIRQKSICDVCGKEFKMKKRLKE  422 (459)
Q Consensus       344 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~-~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~C~~~f~~~~~l~~  422 (459)
                      .++++|.|++|++.|.+...|..|++.|.+. +|.|++|++.|.+...|..|++ .|.++++|.|++|++.|.+...|..
T Consensus         4 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~C~~~f~~~~~l~~   82 (96)
T 2dmd_A            4 GSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLR-IHSDERPFKCQICPYASRNSSQLTV   82 (96)
T ss_dssp             CCCCCCCBTTTTBCCCCHHHHHHHGGGCCCCCSEECSSSCCEESSHHHHHHHHH-HSCCCCCEECSSSSCEESSHHHHHH
T ss_pred             CCCcCeECCCCCCccCCHHHHHHHHHhcCCCCCEeCCCCCCccCCHHHHHHHHH-HhCCCCCccCCCCCCccCCHHHHHH
Confidence            4567777777777777777777777777765 7888888888888888888887 7888888999999999999999999


Q ss_pred             HHHHhCCCCCc
Q psy11588        423 HMAVHTTDRPF  433 (459)
Q Consensus       423 H~~~H~~~~~~  433 (459)
                      |+++|+++++.
T Consensus        83 H~~~h~~~~~p   93 (96)
T 2dmd_A           83 HLRSHTGDSGP   93 (96)
T ss_dssp             HHTTCCSCCCC
T ss_pred             HHHHhcCCCCC
Confidence            99999888754

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.73  E-value=5.6e-18  Score=126.97  Aligned_cols=83  Identities=33%  Similarity=0.703  Sum_probs=71.5

Q ss_pred             CcccCCCCCcCCChHHHHHHHHhhcCCCCccccccchhccCChHHHHHHHHHhCCC--CCcccCccccccCChHHHHHHH
Q psy11588        375 NVVCSYCGNTYKNPKSLESHIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTD--RPFVCDMCPSAFKLKKHLQQHY  452 (459)
Q Consensus       375 ~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~--~~~~C~~C~~~f~~~~~l~~H~  452 (459)
                      +|.|++|++.|.+...|..|++ .|.++++|.|++|++.|.+...|..|+++|+++  ++|.|++|++.|.+...|..|+
T Consensus         7 ~~~C~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C~~~f~~~~~L~~H~   85 (95)
T 2yt9_A            7 GVACEICGKIFRDVYHLNRHKL-SHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHI   85 (95)
T ss_dssp             CEECSSSCCEESSSHHHHHHHH-HSCSSCSEECSSSCCEESCHHHHHHHHHHHCCCCCSSBCCSSSCCCBSSHHHHHHHH
T ss_pred             CeECCCCCCccCChHHHHHHHH-hcCCCCCCcCCCCCCccCCHHHHHHHHHHhcCCCCCceECCCccchhCCHHHHHHHH
Confidence            6788888888888888888887 688888899999999999999999999999887  8899999999999999999998


Q ss_pred             H-HhcCC
Q psy11588        453 K-VHLKK  458 (459)
Q Consensus       453 ~-~H~~~  458 (459)
                      + +|.++
T Consensus        86 ~~~H~~~   92 (95)
T 2yt9_A           86 KQVHSGP   92 (95)
T ss_dssp             HHTSCCC
T ss_pred             HHhcCCC
Confidence            6 67664

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.72  E-value=3.9e-18  Score=126.42  Aligned_cols=85  Identities=33%  Similarity=0.703  Sum_probs=67.2

Q ss_pred             CCCcccc--cccccccccchHHHHHhhhCCC-CcccCCCCCcCCChHHHHHHHHhhcCCCCccccccchhccCChHHHHH
Q psy11588        346 EKKYVCE--TCGASFVQWGSLNQHNLVHTAV-NVVCSYCGNTYKNPKSLESHIRYAHTIRQKSICDVCGKEFKMKKRLKE  422 (459)
Q Consensus       346 ~~~~~C~--~C~~~f~~~~~l~~H~~~h~~~-~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~C~~~f~~~~~l~~  422 (459)
                      +++|.|+  .|++.|.+...|..|+++|.+. +|.|+.|++.|.+...|..|++ .|.++++|.|++|++.|.+...|..
T Consensus         2 ~k~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~C~~~f~~~~~l~~   80 (90)
T 1a1h_A            2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR-THTGEKPFACDICGRKFARSDERKR   80 (90)
T ss_dssp             -CCEECCSSSCCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHH-HHHCCCCEECTTTCCEESSHHHHHH
T ss_pred             CCceECCCCCCCCccCCHHHHHHHHHHhCCCCCccCCCCCcccCCHHHHHHHHH-HcCCCCCccCCCCCchhCCHHHHHH
Confidence            5677776  4777777777777777777665 6788888888888888888887 6777888999999999999999999


Q ss_pred             HHHHhCCCC
Q psy11588        423 HMAVHTTDR  431 (459)
Q Consensus       423 H~~~H~~~~  431 (459)
                      |+++|++++
T Consensus        81 H~~~H~~~k   89 (90)
T 1a1h_A           81 HTKIHLRQK   89 (90)
T ss_dssp             HHGGGGC--
T ss_pred             HHHHhcccC
Confidence            999998875

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.72  E-value=3.1e-19  Score=139.05  Aligned_cols=103  Identities=20%  Similarity=0.242  Sum_probs=80.6

Q ss_pred             hHHHHHHHHHcCCCCCcccccccccccccchHHHHHhh--hCCC-C-cccCCCCCcC--CChHHHHHHHHhhcCCCCccc
Q psy11588        333 ITNMKVHMRIHTGEKKYVCETCGASFVQWGSLNQHNLV--HTAV-N-VVCSYCGNTY--KNPKSLESHIRYAHTIRQKSI  406 (459)
Q Consensus       333 ~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~--h~~~-~-~~C~~C~~~f--~~~~~l~~H~~~~H~~~~~~~  406 (459)
                      ...|..|+++|+++++|.|++|++.|.+...|..|++.  |.+. + +.|++|++.|  .+...|..|++ .|.+++||.
T Consensus         4 ~~~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~~~h~~~~~~~~C~~C~~~f~f~~~~~l~~H~~-~H~~~~~~~   82 (115)
T 2dmi_A            4 GSSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEG-KEDAQKVLK   82 (115)
T ss_dssp             CCCCCCCCCCCCCCCSEEBSSSSCEESSHHHHHHHHHHTCCCBCSCCCCCCCCCSCCSSCCCCCCCCCCC-SCCCCSSCB
T ss_pred             chhhhhheeeeCCCCCEECCccCchhcCHHHHHHHHHHhCccccCCCccCCCCCcccccccHHHHHHHhh-ccCCCcceE
Confidence            34566777777788888888888888888888888877  5443 3 4588888887  78888888887 788888999


Q ss_pred             cccchhccCChHHHHHHHHHhCCCCCcccC
Q psy11588        407 CDVCGKEFKMKKRLKEHMAVHTTDRPFVCD  436 (459)
Q Consensus       407 C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~  436 (459)
                      |++|++.|.+...|..|+++|+.......+
T Consensus        83 C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~  112 (115)
T 2dmi_A           83 CMYCGHSFESLQDLSVHMIKTKHYQKVSGP  112 (115)
T ss_dssp             CSSSCCBCSSHHHHHHHHHHTTTTTCSCCC
T ss_pred             CCCCCCccCCHHHHHHHHHHhCCcccCCCC
Confidence            999999999999999999988877655544

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.71  E-value=6.4e-18  Score=130.39  Aligned_cols=81  Identities=31%  Similarity=0.673  Sum_probs=65.2

Q ss_pred             CcccCCCCCcCCChHHHHHHHHhhcCCCCccccccchhccCChHHHHHHHHHhCCCCCcccCccccccCChHHHHHHHHH
Q psy11588        375 NVVCSYCGNTYKNPKSLESHIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKV  454 (459)
Q Consensus       375 ~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~  454 (459)
                      +|.| .|++.|.+...|..|++ .|.++++|.|++|++.|.+...|..|+++|+++++|.|++|++.|.+...|..|+++
T Consensus        10 ~~~C-~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~   87 (110)
T 2csh_A           10 LYPC-QCGKSFTHKSQRDRHMS-MHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSFHRHVTS   87 (110)
T ss_dssp             CEEC-TTSCEESSHHHHHHHHH-HHSCCCSEECTTTSCEESSSHHHHHHHTTTCCCCCEECSSSCCEESCHHHHHHHHHH
T ss_pred             CEec-cCCCccCCHHHHHHHHH-HcCCCcCccCCCCCcccCCHHHHHHHHHHcCCCCCeeCCCCcchhcCHHHHHHHHHH
Confidence            6777 67777777777777777 666777888888888888888888888888888888888888888888888888887


Q ss_pred             hcC
Q psy11588        455 HLK  457 (459)
Q Consensus       455 H~~  457 (459)
                      |++
T Consensus        88 ~~~   90 (110)
T 2csh_A           88 CTK   90 (110)
T ss_dssp             HHH
T ss_pred             ccc
Confidence            764

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.71  E-value=5.9e-18  Score=129.81  Aligned_cols=89  Identities=20%  Similarity=0.318  Sum_probs=80.3

Q ss_pred             HHhhhCCC-CcccCCCCCcCCChHHHHHHHHhhcCCCCccccccchhccCChHHHHHHHHHhCCCCCcccCccccccCCh
Q psy11588        367 HNLVHTAV-NVVCSYCGNTYKNPKSLESHIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMCPSAFKLK  445 (459)
Q Consensus       367 H~~~h~~~-~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~~C~~~f~~~  445 (459)
                      ++++|.+. +|.|++|++.|.+...|..|++ .|  .++|.|++|++.|.....|..|++ |++++||.|++|++.|.+.
T Consensus         7 ~~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~-~H--~~~~~C~~C~~~f~~~~~l~~H~~-H~~~~~~~C~~C~~~f~~~   82 (107)
T 1wjp_A            7 GASPVENKEVYQCRLCNAKLSSLLEQGSHER-LC--RNAAVCPYCSLRFFSPELKQEHES-KCEYKKLTCLECMRTFKSS   82 (107)
T ss_dssp             CCCCCCCCCCCBCTTTCCBCSSHHHHHHHHH-HH--HHSBCCTTTCCCBSSHHHHHHHHH-HCSTGGGEEGGGTEECSSH
T ss_pred             cCcccCCCcCeECCCCCCccCCHHHHHHHHH-HC--CCCccCCCCCCccCCHHHHHHHHH-cCCCCCccCccccchhCCH
Confidence            34556666 8999999999999999999999 56  378999999999999999999995 9999999999999999999


Q ss_pred             HHHHHHHH-HhcCCC
Q psy11588        446 KHLQQHYK-VHLKKD  459 (459)
Q Consensus       446 ~~l~~H~~-~H~~~~  459 (459)
                      ..|..|++ +|.+++
T Consensus        83 ~~L~~H~~~~H~~~~   97 (107)
T 1wjp_A           83 FSIWRHQVEVHNQNN   97 (107)
T ss_dssp             HHHHHHHHHTSCCCC
T ss_pred             HHHHHHHHHHcCCCC
Confidence            99999997 777653

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.70  E-value=1e-17  Score=121.77  Aligned_cols=81  Identities=32%  Similarity=0.685  Sum_probs=58.6

Q ss_pred             CcccccccccccccchHHHHHhhhCCC-CcccCCCCCcCCChHHHHHHHHhhcCCCCccccccchhccCChHHHHHHHHH
Q psy11588        348 KYVCETCGASFVQWGSLNQHNLVHTAV-NVVCSYCGNTYKNPKSLESHIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAV  426 (459)
Q Consensus       348 ~~~C~~C~~~f~~~~~l~~H~~~h~~~-~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~  426 (459)
                      ||.|++|++.|.+...|..|+++|.+. +|.|+.|++.|.+...|..|++ .|.++++|.|++|++.|.+.+.|..|+++
T Consensus         1 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~C~~~f~~~~~l~~H~~~   79 (82)
T 2kmk_A            1 SFDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTF-IHTGEKPHKCQVCGKAFSQSSNLITHSRK   79 (82)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHHHTCCCEECSSSCCEESSHHHHHHHHH-HHHTCCCEECTTTSCEESSHHHHHHHHHH
T ss_pred             CccCCCCcccccCchhHHHHHHHcCCCCCeeCCcCChhhCCHHHHHHHHH-HhcCCCCCcCCCcchhhCChHHHHHHHHh
Confidence            356666666666666666666666554 6677777777777777777777 66667788888888888888888888888


Q ss_pred             hCC
Q psy11588        427 HTT  429 (459)
Q Consensus       427 H~~  429 (459)
                      |+|
T Consensus        80 H~g   82 (82)
T 2kmk_A           80 HTG   82 (82)
T ss_dssp             HC-
T ss_pred             hCC
Confidence            764

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=99.70  E-value=4.5e-17  Score=123.26  Aligned_cols=82  Identities=32%  Similarity=0.650  Sum_probs=76.8

Q ss_pred             CcccCC--CCCcCCChHHHHHHHHhhcCCCCccccc--cchhccCChHHHHHHHHHhCCCCCcccCccccccCChHHHHH
Q psy11588        375 NVVCSY--CGNTYKNPKSLESHIRYAHTIRQKSICD--VCGKEFKMKKRLKEHMAVHTTDRPFVCDMCPSAFKLKKHLQQ  450 (459)
Q Consensus       375 ~~~C~~--C~~~f~~~~~l~~H~~~~H~~~~~~~C~--~C~~~f~~~~~l~~H~~~H~~~~~~~C~~C~~~f~~~~~l~~  450 (459)
                      +|.|+.  |++.|.+...|..|++ .|.++++|.|+  .|++.|.+...|..|+++|++++||.|++|++.|.+...|..
T Consensus        15 ~~~C~~~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~   93 (100)
T 2ebt_A           15 IHYCDYPGCTKVYTKSSHLKAHLR-THTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLAL   93 (100)
T ss_dssp             CEECCSSSCCCEESCHHHHHHHHH-HHSCCCCEECCSSSCCCEESSHHHHHHHHHHHTSCCSCBCSSSCCBCSSHHHHHH
T ss_pred             ceEcCCCCCCCcccCHHHHHHHHH-HhCCCCCeeCCCCCCCCccCCHHHHHHHHHHhCCCCCeECCCCcCccCCHHHHHH
Confidence            688986  9999999999999998 78888999996  599999999999999999999999999999999999999999


Q ss_pred             HHHHhcC
Q psy11588        451 HYKVHLK  457 (459)
Q Consensus       451 H~~~H~~  457 (459)
                      |+++|.+
T Consensus        94 H~~~H~~  100 (100)
T 2ebt_A           94 HMKRHQN  100 (100)
T ss_dssp             HHHHHCC
T ss_pred             HHHHhCC
Confidence            9999975

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=99.69  E-value=1.7e-17  Score=122.62  Aligned_cols=82  Identities=39%  Similarity=0.778  Sum_probs=76.6

Q ss_pred             CCcccCC--CCCcCCChHHHHHHHHhhcCCCCccccc--cchhccCChHHHHHHHHHhCCCCCcccCccccccCChHHHH
Q psy11588        374 VNVVCSY--CGNTYKNPKSLESHIRYAHTIRQKSICD--VCGKEFKMKKRLKEHMAVHTTDRPFVCDMCPSAFKLKKHLQ  449 (459)
Q Consensus       374 ~~~~C~~--C~~~f~~~~~l~~H~~~~H~~~~~~~C~--~C~~~f~~~~~l~~H~~~H~~~~~~~C~~C~~~f~~~~~l~  449 (459)
                      .+|.|+.  |++.|.+...|..|++ .|.++++|.|+  .|++.|.+...|..|+++|++++||.|++|++.|.+...|.
T Consensus         4 ~~~~C~~~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~   82 (89)
T 2wbs_A            4 ATHTCDYAGCGKTYTKSSHLKAHLR-THTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLA   82 (89)
T ss_dssp             CCEECCSTTTCCEESSHHHHHHHHT-TSCSSCCEECCSTTTCCEESSHHHHHHHHHHHHCCCCEECSSSSCEESSHHHHH
T ss_pred             CCeeCCCCCCCCcCCCHHHHHHHHH-hcCCCCCcCCCCCCCCCccCCHHHHHHHHHHcCCCCCccCCCCCcccCCHHHHH
Confidence            3688988  9999999999999998 78889999997  59999999999999999999999999999999999999999


Q ss_pred             HHHHHhc
Q psy11588        450 QHYKVHL  456 (459)
Q Consensus       450 ~H~~~H~  456 (459)
                      .|+++|+
T Consensus        83 ~H~~~H~   89 (89)
T 2wbs_A           83 LHMKRHF   89 (89)
T ss_dssp             HHGGGGC
T ss_pred             HHHHhhC
Confidence            9999985

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.68  E-value=9.2e-17  Score=120.27  Aligned_cols=83  Identities=33%  Similarity=0.659  Sum_probs=43.0

Q ss_pred             CCCcccccccccccccchHHHHHhhhCCC-CcccCCCCCcCCChHHHHHHHHhhcCCC--CccccccchhccCChHHHHH
Q psy11588        346 EKKYVCETCGASFVQWGSLNQHNLVHTAV-NVVCSYCGNTYKNPKSLESHIRYAHTIR--QKSICDVCGKEFKMKKRLKE  422 (459)
Q Consensus       346 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~-~~~C~~C~~~f~~~~~l~~H~~~~H~~~--~~~~C~~C~~~f~~~~~l~~  422 (459)
                      +++|.|++|++.|.+...|..|+++|.+. +|.|++|++.|.+...|..|++ .|.++  ++|.|++|++.|.+...|..
T Consensus         5 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~-~h~~~~~~~~~C~~C~~~f~~~~~L~~   83 (95)
T 2yt9_A            5 SSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVR-SHDGSVGKPYICQSCGKGFSRPDHLNG   83 (95)
T ss_dssp             CSCEECSSSCCEESSSHHHHHHHHHSCSSCSEECSSSCCEESCHHHHHHHHH-HHCCCCCSSBCCSSSCCCBSSHHHHHH
T ss_pred             CCCeECCCCCCccCChHHHHHHHHhcCCCCCCcCCCCCCccCCHHHHHHHHH-HhcCCCCCceECCCccchhCCHHHHHH
Confidence            34444444544444444455554444433 4555555555555555555555 33332  55666666666666666666


Q ss_pred             HHH-HhCC
Q psy11588        423 HMA-VHTT  429 (459)
Q Consensus       423 H~~-~H~~  429 (459)
                      |++ +|.+
T Consensus        84 H~~~~H~~   91 (95)
T 2yt9_A           84 HIKQVHSG   91 (95)
T ss_dssp             HHHHTSCC
T ss_pred             HHHHhcCC
Confidence            654 4444

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.65  E-value=9.7e-17  Score=123.71  Aligned_cols=84  Identities=29%  Similarity=0.631  Sum_probs=52.0

Q ss_pred             cCCCCCcccccccccccccchHHHHHhhhCCC-CcccCCCCCcCCChHHHHHHHHhhcCCCCccccccchhccCChHHHH
Q psy11588        343 HTGEKKYVCETCGASFVQWGSLNQHNLVHTAV-NVVCSYCGNTYKNPKSLESHIRYAHTIRQKSICDVCGKEFKMKKRLK  421 (459)
Q Consensus       343 h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~-~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~C~~~f~~~~~l~  421 (459)
                      |.++++|.| .|++.|.+...|..|++.|.+. +|.|++|++.|.+...|..|++ .|.++++|.|++|++.|.+...|.
T Consensus         5 h~~~k~~~C-~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~C~~~f~~~~~l~   82 (110)
T 2csh_A            5 SSGDKLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMK-IHTGIKPYECNICAKRFMWRDSFH   82 (110)
T ss_dssp             CCCCCCEEC-TTSCEESSHHHHHHHHHHHSCCCSEECTTTSCEESSSHHHHHHHT-TTCCCCCEECSSSCCEESCHHHHH
T ss_pred             CCCCCCEec-cCCCccCCHHHHHHHHHHcCCCcCccCCCCCcccCCHHHHHHHHH-HcCCCCCeeCCCCcchhcCHHHHH
Confidence            445555555 5555555555555555555544 5566666666666666666665 556666677777777777777777


Q ss_pred             HHHHHhC
Q psy11588        422 EHMAVHT  428 (459)
Q Consensus       422 ~H~~~H~  428 (459)
                      .|+++|+
T Consensus        83 ~H~~~~~   89 (110)
T 2csh_A           83 RHVTSCT   89 (110)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHcc
Confidence            7776664

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=99.64  E-value=2.9e-17  Score=120.94  Aligned_cols=81  Identities=23%  Similarity=0.458  Sum_probs=69.5

Q ss_pred             CCcccCCCCCcCCChHHHHHHHHhhcCCCCccccccchhccCChHHHHHHHHHhCCCCCcccCccccccCChHHHHHHHH
Q psy11588        374 VNVVCSYCGNTYKNPKSLESHIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMCPSAFKLKKHLQQHYK  453 (459)
Q Consensus       374 ~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~  453 (459)
                      .+|.|++|++.|.+...|..|++ .|.+++||.|++|++.|.+...|..|+++|++ .+|.|+.|++.|.+...|..|++
T Consensus         2 k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~~C~k~f~~~~~L~~H~~~h~~-~~~~c~~C~~~f~~~~~L~~H~~   79 (88)
T 1llm_C            2 KPFQCRICMRNFSRSDHLTTHIR-THTGEKPFACDICGRKFARSDERKRHRDIQHI-LPILEDKVEELLSKNYHLENEVA   79 (88)
T ss_dssp             CCEECTTTCCEESCHHHHHHHHH-HHHCCCCEECTTTCCEESSHHHHHHHHHHHTH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCcCCCCCCccCCHHHHHHHHH-HcCCCCCccCCCCCCccCCHHHHHHHHHHhCC-CcchHHHHHHHHHHHhhhHHHHH
Confidence            36788888888888888888888 67788889999999999999999999988885 78899999999999999999987


Q ss_pred             Hhc
Q psy11588        454 VHL  456 (459)
Q Consensus       454 ~H~  456 (459)
                      .++
T Consensus        80 ~~h   82 (88)
T 1llm_C           80 RLK   82 (88)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            664

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=99.62  E-value=3e-16  Score=114.78  Aligned_cols=78  Identities=29%  Similarity=0.507  Sum_probs=72.4

Q ss_pred             Cccc--CCCCCcCCChHHHHHHHHhhcCCCCcccccc--chhccCChHHHHHHHHHhCCCCCcccCc---cccccCChHH
Q psy11588        375 NVVC--SYCGNTYKNPKSLESHIRYAHTIRQKSICDV--CGKEFKMKKRLKEHMAVHTTDRPFVCDM---CPSAFKLKKH  447 (459)
Q Consensus       375 ~~~C--~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~--C~~~f~~~~~l~~H~~~H~~~~~~~C~~---C~~~f~~~~~  447 (459)
                      +|.|  +.|++.|.+...|..|++ .|.++++|.|++  |++.|.+...|..|+++|++   |.|+.   |++.|.+...
T Consensus         1 p~~C~~~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~---~~C~~~~~C~~~f~~~~~   76 (85)
T 2j7j_A            1 MYVCHFENCGKAFKKHNQLKVHQF-SHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG---YPCKKDDSCSFVGKTWTL   76 (85)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHH-HHHTTCCEECCSTTCCCEESSHHHHHHHHHHHHS---EECCSCSSCCCEESSHHH
T ss_pred             CccCCCCCCCcccCCHHHHHHHHH-HhCCCCCeeCCCCCCcCccCCHHHHHHHHHHhCC---CCCCCCCCCCCccCCHHH
Confidence            4789  889999999999999998 788889999988  99999999999999999998   99999   9999999999


Q ss_pred             HHHHHHHhc
Q psy11588        448 LQQHYKVHL  456 (459)
Q Consensus       448 l~~H~~~H~  456 (459)
                      |..|+++|+
T Consensus        77 l~~H~~~hh   85 (85)
T 2j7j_A           77 YLKHVAECH   85 (85)
T ss_dssp             HHHHHHHCC
T ss_pred             HHHHHHhcC
Confidence            999999885

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.61  E-value=3.9e-16  Score=104.08  Aligned_cols=57  Identities=32%  Similarity=0.638  Sum_probs=40.4

Q ss_pred             CCccccccccccccChHHHHHHHHHcCCCCCcccccccccccccchHHHHHhhhCCC
Q psy11588        318 VRDHQCSVCGKAFADITNMKVHMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHTAV  374 (459)
Q Consensus       318 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~  374 (459)
                      ++||.|++||+.|.....|..|+++|.+++||.|++||+.|...+.|..|+++|+++
T Consensus         2 EKpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~C~k~F~~~~~L~~H~~~Htge   58 (60)
T 4gzn_C            2 ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQNK   58 (60)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHHHHHTCCCEECTTTCCEESSHHHHHHHGGGGSCC
T ss_pred             CCCccCCCCCCEeCCHHHHHHHHHHhCCCcCeECCCCCCCcCCHHHHHHHhCccCCC
Confidence            466777777777777777777777777777777777777777777777777777665

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=99.60  E-value=1.6e-15  Score=114.61  Aligned_cols=83  Identities=25%  Similarity=0.478  Sum_probs=59.1

Q ss_pred             CCCccccc--ccccccccchHHHHHhhhCCC-CcccC--CCCCcCCChHHHHHHHHhhcCCCCccccccchhccCChHHH
Q psy11588        346 EKKYVCET--CGASFVQWGSLNQHNLVHTAV-NVVCS--YCGNTYKNPKSLESHIRYAHTIRQKSICDVCGKEFKMKKRL  420 (459)
Q Consensus       346 ~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~-~~~C~--~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~C~~~f~~~~~l  420 (459)
                      +++|.|+.  |++.|.+...|..|++.|.+. +|.|+  .|++.|.+...|..|++ .|.++++|.|++|++.|.+...|
T Consensus        13 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~C~~~f~~~~~l   91 (100)
T 2ebt_A           13 RRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYR-KHTGAKPFQCGVCNRSFSRSDHL   91 (100)
T ss_dssp             CCCEECCSSSCCCEESCHHHHHHHHHHHSCCCCEECCSSSCCCEESSHHHHHHHHH-HHTSCCSCBCSSSCCBCSSHHHH
T ss_pred             CcceEcCCCCCCCcccCHHHHHHHHHHhCCCCCeeCCCCCCCCccCCHHHHHHHHH-HhCCCCCeECCCCcCccCCHHHH
Confidence            34566664  666666666666666666554 56664  47777777777777776 67777788888888888888888


Q ss_pred             HHHHHHhCC
Q psy11588        421 KEHMAVHTT  429 (459)
Q Consensus       421 ~~H~~~H~~  429 (459)
                      ..|+++|++
T Consensus        92 ~~H~~~H~~  100 (100)
T 2ebt_A           92 ALHMKRHQN  100 (100)
T ss_dssp             HHHHHHHCC
T ss_pred             HHHHHHhCC
Confidence            888888764

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=99.59  E-value=5.7e-17  Score=119.38  Aligned_cols=79  Identities=20%  Similarity=0.362  Sum_probs=41.9

Q ss_pred             CCcccccccccccccchHHHHHhhhCCC-CcccCCCCCcCCChHHHHHHHHhhcCCCCccccccchhccCChHHHHHHHH
Q psy11588        347 KKYVCETCGASFVQWGSLNQHNLVHTAV-NVVCSYCGNTYKNPKSLESHIRYAHTIRQKSICDVCGKEFKMKKRLKEHMA  425 (459)
Q Consensus       347 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~-~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~  425 (459)
                      +||.|++|++.|.+...|..|+++|.+. +|.|+.|++.|.+...|..|++..|  ..+|.|+.|++.|.+...|..|++
T Consensus         2 k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~h~--~~~~~c~~C~~~f~~~~~L~~H~~   79 (88)
T 1llm_C            2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQH--ILPILEDKVEELLSKNYHLENEVA   79 (88)
T ss_dssp             CCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEESSHHHHHHHHHHHT--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCcCCCCCCccCCHHHHHHHHHHcCCCCCccCCCCCCccCCHHHHHHHHHHhC--CCcchHHHHHHHHHHHhhhHHHHH
Confidence            3444555555555555555554444443 4555555555555555555555333  145666666666666666666665


Q ss_pred             Hh
Q psy11588        426 VH  427 (459)
Q Consensus       426 ~H  427 (459)
                      .+
T Consensus        80 ~~   81 (88)
T 1llm_C           80 RL   81 (88)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=99.58  E-value=1.1e-15  Score=112.78  Aligned_cols=80  Identities=28%  Similarity=0.543  Sum_probs=57.3

Q ss_pred             CCccccc--ccccccccchHHHHHhhhCCC-CcccC--CCCCcCCChHHHHHHHHhhcCCCCccccccchhccCChHHHH
Q psy11588        347 KKYVCET--CGASFVQWGSLNQHNLVHTAV-NVVCS--YCGNTYKNPKSLESHIRYAHTIRQKSICDVCGKEFKMKKRLK  421 (459)
Q Consensus       347 ~~~~C~~--C~~~f~~~~~l~~H~~~h~~~-~~~C~--~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~C~~~f~~~~~l~  421 (459)
                      .+|.|+.  |++.|.+...|..|++.|.+. +|.|+  .|++.|.+...|..|++ .|.++++|.|++|++.|.+.+.|.
T Consensus         4 ~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~C~~~f~~~~~l~   82 (89)
T 2wbs_A            4 ATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYR-KHTGHRPFQCQKCDRAFSRSDHLA   82 (89)
T ss_dssp             CCEECCSTTTCCEESSHHHHHHHHTTSCSSCCEECCSTTTCCEESSHHHHHHHHH-HHHCCCCEECSSSSCEESSHHHHH
T ss_pred             CCeeCCCCCCCCcCCCHHHHHHHHHhcCCCCCcCCCCCCCCCccCCHHHHHHHHH-HcCCCCCccCCCCCcccCCHHHHH
Confidence            4566666  666666666666666666554 56675  47777777777777776 666777888888888888888888


Q ss_pred             HHHHHh
Q psy11588        422 EHMAVH  427 (459)
Q Consensus       422 ~H~~~H  427 (459)
                      .|+++|
T Consensus        83 ~H~~~H   88 (89)
T 2wbs_A           83 LHMKRH   88 (89)
T ss_dssp             HHGGGG
T ss_pred             HHHHhh
Confidence            888776

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.58  E-value=1.7e-15  Score=108.95  Aligned_cols=69  Identities=33%  Similarity=0.794  Sum_probs=63.3

Q ss_pred             CcccCC--CCCcCCChHHHHHHHHhhcCCCCcccccc--chhccCChHHHHHHHHHhCCCCCcccCccccccC
Q psy11588        375 NVVCSY--CGNTYKNPKSLESHIRYAHTIRQKSICDV--CGKEFKMKKRLKEHMAVHTTDRPFVCDMCPSAFK  443 (459)
Q Consensus       375 ~~~C~~--C~~~f~~~~~l~~H~~~~H~~~~~~~C~~--C~~~f~~~~~l~~H~~~H~~~~~~~C~~C~~~f~  443 (459)
                      +|.|+.  |++.|.+...|..|++..|.++++|.|++  |++.|.+...|..|+++|++++||.|++|+++|.
T Consensus         7 ~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~F~   79 (79)
T 2dlk_A            7 GMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFSGPSSG   79 (79)
T ss_dssp             SEECSSTTTCCEESSHHHHHHHHHHGGGSCCCEECSCTTTCCEESSHHHHHHHHHHHHTSCCCSCCSSSCCCC
T ss_pred             CccCCCCCCcCccCCHHHHHHHHHHHhCCCCCeECCCCCCcCccCCHHHHHHHHHHhCCCCCeeCCCCCCCCC
Confidence            677776  99999999999999986788899999999  9999999999999999999999999999999984

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.57  E-value=1.4e-15  Score=111.38  Aligned_cols=79  Identities=19%  Similarity=0.360  Sum_probs=65.0

Q ss_pred             HHHHHhhhCCC-CcccCCCCCcCCChHHHHHHHHhhcCCC---CccccccchhccCChHHHHHHHHHhCCCCCcccCccc
Q psy11588        364 LNQHNLVHTAV-NVVCSYCGNTYKNPKSLESHIRYAHTIR---QKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMCP  439 (459)
Q Consensus       364 l~~H~~~h~~~-~~~C~~C~~~f~~~~~l~~H~~~~H~~~---~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~~C~  439 (459)
                      |.+|+++|.+. +|.|++|++.|.+...|..|++..|...   ++|.|++|++.|.....|..|+++|++++++.|..|+
T Consensus         3 ~~~H~~~H~~~k~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~   82 (86)
T 1x6h_A            3 SGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGPDGVEGENSG   82 (86)
T ss_dssp             TTCCSTTCCCCCCEECSSSSCEESSHHHHHHHHHHTTCSSCCCCCEECSSSCCEESCHHHHHHHHHHCCCCCSCCCCCCC
T ss_pred             cccccceecCCCCCcCCCCCCccCCHHHHHHHHHHhcCCcCCCcceECCCCCChhCCHHHHHHHHHHccCCCCcccCCCC
Confidence            45577777765 6778888888888888888887555543   7899999999999999999999999999999999998


Q ss_pred             ccc
Q psy11588        440 SAF  442 (459)
Q Consensus       440 ~~f  442 (459)
                      .+|
T Consensus        83 ~~~   85 (86)
T 1x6h_A           83 PSS   85 (86)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            875

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.57  E-value=6e-16  Score=116.20  Aligned_cols=67  Identities=27%  Similarity=0.407  Sum_probs=33.6

Q ss_pred             HHHHHHHhhcCCCCccccccchhccC-ChHHHHHHHHHhCC-CCCcccCccccccCChHHHHHHHHHhcC
Q psy11588        390 SLESHIRYAHTIRQKSICDVCGKEFK-MKKRLKEHMAVHTT-DRPFVCDMCPSAFKLKKHLQQHYKVHLK  457 (459)
Q Consensus       390 ~l~~H~~~~H~~~~~~~C~~C~~~f~-~~~~l~~H~~~H~~-~~~~~C~~C~~~f~~~~~l~~H~~~H~~  457 (459)
                      .+..|++ .|.++++|.|++|++.|. ....|..|+++|++ ++||.|++|++.|.+...|..|+++|++
T Consensus        11 ~~~~h~~-~h~~~~~~~C~~C~k~f~~~~~~L~~H~~~h~~~~~~~~C~~C~k~F~~~~~L~~H~~~h~~   79 (98)
T 2gqj_A           11 PEEQWQR-AIHERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHS   79 (98)
T ss_dssp             SCSHHHH-TTTTTSCCCCTTTCCCCSSCSHHHHHHHHHHHHHHHHHSCSSSCCCCSCHHHHHHHHHHHSC
T ss_pred             cHHHHHH-HhccCCCcCCCCCCCChhhhHHHHHHHHHHHcCCCCCEECCCCCCccCCHHHHHHHHHHHcC
Confidence            3444444 444445555555555555 55555555555544 4455555555555555555555555444

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=99.57  E-value=1.3e-16  Score=126.81  Aligned_cols=70  Identities=17%  Similarity=0.313  Sum_probs=61.9

Q ss_pred             CCChHHHHHHHHhhcCCCCccccccchhccCChHHHHHHHHHhCCCCCcccCccccccCChHHHHHHHHHhcCC
Q psy11588        385 YKNPKSLESHIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVHLKK  458 (459)
Q Consensus       385 f~~~~~l~~H~~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~  458 (459)
                      |.....|..|++  |.+++||.|++||+.|.....|..|+++|  ++||.|++|++.|.+...|..|+++|+|.
T Consensus        57 ~~~~~~l~~h~~--h~~~~~~~C~~C~k~f~~~~~l~~H~~~H--~~~~~C~~C~k~f~~~~~l~~H~~~h~~~  126 (129)
T 2wbt_A           57 LDESSYLYRLLA--SKAISQFVCPLCLMPFSSSVSLKQHIRYT--EHTKVCPVCKKEFTSTDSALDHVCKKHNI  126 (129)
T ss_dssp             TTTHHHHHHHHH--HHHHCSEECTTTCCEESSHHHHHHHHHHT--CCCCBCTTTCCBCSSHHHHHHHHHHTTCC
T ss_pred             cCCHHHHHHHHH--hCCCCCeECCCCCcccCCHhHHHHHHHHC--CCCCCCCCCCcccCCHHHHHHHHHHHCCc
Confidence            356677777774  66789999999999999999999999998  89999999999999999999999999875

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.55  E-value=4.1e-15  Score=104.05  Aligned_cols=62  Identities=27%  Similarity=0.473  Sum_probs=55.9

Q ss_pred             hcCCCCccccccchhccCChHHHHHHHHHhCCCCCcccCccccccCChHHHHHHHHHhcCCC
Q psy11588        398 AHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVHLKKD  459 (459)
Q Consensus       398 ~H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~  459 (459)
                      .|+++++|.|++|++.|.+...|..|+++|+++++|.|++|++.|.+...|..|+++|++++
T Consensus         3 s~~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~   64 (70)
T 1x5w_A            3 SGSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGDM   64 (70)
T ss_dssp             SCCCCCSEECSSSSCEESSHHHHHHHHGGGCCSCSEECSSSSCEESSHHHHHHHHHHHHSSS
T ss_pred             CCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCEeCCCCCCccCCHHHHHHHHHHHhCCC
Confidence            46788899999999999999999999999999999999999999999999999999998764

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.55  E-value=4e-15  Score=104.77  Aligned_cols=61  Identities=31%  Similarity=0.566  Sum_probs=58.3

Q ss_pred             hcCCCCccccccchhccCChHHHHHHHHHhCCCCCcccCccccccCChHHHHHHHHHhcCC
Q psy11588        398 AHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVHLKK  458 (459)
Q Consensus       398 ~H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~  458 (459)
                      .|.+++||.|++|++.|.....|..|+++|++++||+|++|++.|.+...|..|+++|+++
T Consensus         8 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~   68 (72)
T 1x6e_A            8 IHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTSG   68 (72)
T ss_dssp             TTTTCCCEECSSSCCEESSHHHHHHHHHGGGCSCCEECSSSCCEESSHHHHHHHHHHHHSS
T ss_pred             ccCCCCCccCCCCCCccCCHHHHHHHHHhcCCCCCeECCCCCcccCCHHHHHHHHHhcCCC
Confidence            6888999999999999999999999999999999999999999999999999999999876

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.55  E-value=3.1e-15  Score=107.60  Aligned_cols=62  Identities=26%  Similarity=0.573  Sum_probs=55.8

Q ss_pred             hcCCCCccccccchhccCChHHHHHHHHHhCCCCCcccCccccccCChHHHHHHH-HHhcCCC
Q psy11588        398 AHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMCPSAFKLKKHLQQHY-KVHLKKD  459 (459)
Q Consensus       398 ~H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~~C~~~f~~~~~l~~H~-~~H~~~~  459 (459)
                      .+...++|.|++||+.|.++..|..|+++|++++||.|++|+++|.+...|.+|+ ++|.+|+
T Consensus        22 ~~~~~~~h~C~~Cgk~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~~E~   84 (85)
T 2lv2_A           22 LSASAECHLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHINKCHPSEN   84 (85)
T ss_dssp             SCCCCTTEECTTSCCEESSHHHHHHHHHTTSCSSSEECTTSSCEESSHHHHHHHHHTTCTTCC
T ss_pred             CCCCCCCEECCCCCCCcCcHHHHhhhhhhccCCCccCCCCCCCEeCCHHHHHHhCcccCcCCC
Confidence            4566788999999999999999999999999999999999999999999999997 5787764

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.55  E-value=5.3e-15  Score=110.03  Aligned_cols=74  Identities=19%  Similarity=0.247  Sum_probs=53.0

Q ss_pred             CcCCChHHHHHHHHhhcCCCCccccccchhcc-CChHHHHHHHHHhCCCCCcccCccccccCChHHHHHH-HHHhcCC
Q psy11588        383 NTYKNPKSLESHIRYAHTIRQKSICDVCGKEF-KMKKRLKEHMAVHTTDRPFVCDMCPSAFKLKKHLQQH-YKVHLKK  458 (459)
Q Consensus       383 ~~f~~~~~l~~H~~~~H~~~~~~~C~~C~~~f-~~~~~l~~H~~~H~~~~~~~C~~C~~~f~~~~~l~~H-~~~H~~~  458 (459)
                      ..|.....|..|++ .|.++++|.|++|++.| .+...|..|+++| +++||.|.+|++.|.+...|..| +++|.++
T Consensus        14 ~~~~~~~~~~~~~~-~~~~~~~~~C~~C~k~F~~~~~~L~~H~~~h-~~k~~~C~~Cgk~F~~~~~L~~H~~~~H~~~   89 (96)
T 2ctd_A           14 PVYAAGSLEEQWYL-EIVDKGSVSCPTCQAVGRKTIEGLKKHMENC-KQEMFTCHHCGKQLRSLAGMKYHVMANHNSL   89 (96)
T ss_dssp             CSSCTTCHHHHHHH-HHHHTSCEECTTTCSCEESSHHHHHHHHHHH-CCCCCCCSSSCCCCSSHHHHHHHHHHHTCCC
T ss_pred             CCCCCchHHHHHHH-HhcCCCCcCCCCCCCCcccCHHHHHHHHHHH-CCCCeECCCCCCeeCCHHHHHHHhHHhcCCC
Confidence            35556666677766 55566777777777777 7777777777777 77777777777777777777777 6777654

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.54  E-value=7.6e-15  Score=103.95  Aligned_cols=62  Identities=27%  Similarity=0.637  Sum_probs=53.2

Q ss_pred             hcCCCCccccccchhccCChHHHHHHHHHhCCCCCcccCccccccCChHHHHHHHHHhcCCC
Q psy11588        398 AHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVHLKKD  459 (459)
Q Consensus       398 ~H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~  459 (459)
                      .+.++++|+|++|++.|.+...|..|+++|++++||+|++|++.|.+...|..|+++|++++
T Consensus        11 ~~~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k   72 (74)
T 2lce_A           11 MTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEK   72 (74)
T ss_dssp             CCCCCCSBCCTTSSCCBSCHHHHHHHHHHHCCCCSEECTTTCCEESCHHHHHHHHHHHCCSC
T ss_pred             ccCCCCCeECCCCCceeCCHHHHHHHHHHcCCCCCEECCCCCchhCCHHHHHHHHHhcCCCC
Confidence            46677888888888888888888888888888888888888888888888888888888764

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=99.54  E-value=4.6e-15  Score=99.20  Aligned_cols=57  Identities=32%  Similarity=0.601  Sum_probs=50.5

Q ss_pred             CCCccccccchhccCChHHHHHHHHHhCCCCCcccCccccccCChHHHHHHHHHhcC
Q psy11588        401 IRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVHLK  457 (459)
Q Consensus       401 ~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~  457 (459)
                      +++||.|++|++.|.+...|..|+++|++++||.|++|++.|.+...|..|+++|++
T Consensus         1 g~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~   57 (57)
T 3uk3_C            1 GSSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHHK   57 (57)
T ss_dssp             ----CBCTTTCCBCSCHHHHHHHHHHHHCCCCEECSSSSCEESSHHHHHHHHHHHC-
T ss_pred             CCCCccCCCCcchhCChHHHHHHHHHcCCCCCcCCCCCcchhCCHHHHHHHHHHhcC
Confidence            357899999999999999999999999999999999999999999999999999975

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=99.53  E-value=7.8e-15  Score=98.05  Aligned_cols=56  Identities=38%  Similarity=0.701  Sum_probs=50.9

Q ss_pred             ccccccchhccCChHHHHHHHHHhCCCCCcccCccccccCChHHHHHHHHHhcCCC
Q psy11588        404 KSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVHLKKD  459 (459)
Q Consensus       404 ~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~  459 (459)
                      ||.|++|++.|.+...|..|+++|++++||.|++|++.|.+...|..|+++|++++
T Consensus         1 p~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k   56 (57)
T 1bbo_A            1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK   56 (57)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHTSSCCCEECSSSSCEESSHHHHHHHHHSSSSCC
T ss_pred             CCcCCCCcCcCCCHHHHHHHHHhcCCCCCccCCCCCchhcCHHHHHHHHHHhcccC
Confidence            68899999999999999999999999999999999999999999999999998764

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=99.52  E-value=7e-15  Score=107.39  Aligned_cols=74  Identities=31%  Similarity=0.515  Sum_probs=35.4

Q ss_pred             ccc--ccccccccChHHHHHHHHHcCCCCCccccc--ccccccccchHHHHHhhhCCCCcccCC---CCCcCCChHHHHH
Q psy11588        321 HQC--SVCGKAFADITNMKVHMRIHTGEKKYVCET--CGASFVQWGSLNQHNLVHTAVNVVCSY---CGNTYKNPKSLES  393 (459)
Q Consensus       321 ~~C--~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~C~~---C~~~f~~~~~l~~  393 (459)
                      |.|  +.|++.|.+...|..|+++|.++++|.|+.  |++.|.+...|..|+++|++  |.|+.   |++.|.+...|..
T Consensus         2 ~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~--~~C~~~~~C~~~f~~~~~l~~   79 (85)
T 2j7j_A            2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG--YPCKKDDSCSFVGKTWTLYLK   79 (85)
T ss_dssp             EECCSTTCCCEESSHHHHHHHHHHHHTTCCEECCSTTCCCEESSHHHHHHHHHHHHS--EECCSCSSCCCEESSHHHHHH
T ss_pred             ccCCCCCCCcccCCHHHHHHHHHHhCCCCCeeCCCCCCcCccCCHHHHHHHHHHhCC--CCCCCCCCCCCccCCHHHHHH
Confidence            445  445555555555555555555555555544  44444444444444444443  44444   4444444444444


Q ss_pred             HHH
Q psy11588        394 HIR  396 (459)
Q Consensus       394 H~~  396 (459)
                      |++
T Consensus        80 H~~   82 (85)
T 2j7j_A           80 HVA   82 (85)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=99.51  E-value=7.3e-15  Score=101.49  Aligned_cols=61  Identities=20%  Similarity=0.468  Sum_probs=56.6

Q ss_pred             hhcCCCCccccccchhccCChHHHHHHHHH-h-CCCCCcccCccccccCChHHHHHHHHHhcC
Q psy11588        397 YAHTIRQKSICDVCGKEFKMKKRLKEHMAV-H-TTDRPFVCDMCPSAFKLKKHLQQHYKVHLK  457 (459)
Q Consensus       397 ~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~-H-~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~  457 (459)
                      ..|++++||.|++|++.|.+...|..|+++ | .+++||.|+.|++.|.+.+.|..|+++|++
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~H~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~   65 (66)
T 2drp_A            3 FTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHK   65 (66)
T ss_dssp             CEEEETTEEECTTTCCEESSHHHHHHHHHHHSSSSCCCEECTTTCCEESCHHHHHHHHHHHTC
T ss_pred             cccCCCcceECCCCcchhCCHHHHHHHHHHHcCCCCcCeECCCCCCccCCHHHHHHHHHHHcC
Confidence            368889999999999999999999999998 6 589999999999999999999999999987

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.50  E-value=1.7e-14  Score=103.64  Aligned_cols=71  Identities=31%  Similarity=0.655  Sum_probs=45.1

Q ss_pred             CCCCccccc--cccccCCHHHHHHHHHHHcCCCCcccccc--ccccccChHHHHHHHHHcCCCCCcccccccccc
Q psy11588        288 GEKDHCCHI--CKKVFLRYRNLVCHIKAVHEKVRDHQCSV--CGKAFADITNMKVHMRIHTGEKKYVCETCGASF  358 (459)
Q Consensus       288 ~~~~~~C~~--C~~~f~~~~~l~~H~~~~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f  358 (459)
                      ++++|.|..  |++.|.+...|..|++..|.++++|.|++  |++.|.....|..|+++|+++++|.|++|++.|
T Consensus         4 ~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~F   78 (79)
T 2dlk_A            4 GSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFSGPSS   78 (79)
T ss_dssp             CCSSEECSSTTTCCEESSHHHHHHHHHHGGGSCCCEECSCTTTCCEESSHHHHHHHHHHHHTSCCCSCCSSSCCC
T ss_pred             CCCCccCCCCCCcCccCCHHHHHHHHHHHhCCCCCeECCCCCCcCccCCHHHHHHHHHHhCCCCCeeCCCCCCCC
Confidence            445566655  66666666666666654466666666666  666666666666666666666666666666665

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.50  E-value=9.4e-15  Score=106.94  Aligned_cols=80  Identities=31%  Similarity=0.437  Sum_probs=66.8

Q ss_pred             HHHHHhhccCCCCccccccccccCCHHHHHHHHHHHcCCC---CccccccccccccChHHHHHHHHHcCCCCCccccccc
Q psy11588        279 FTSHLDIHSGEKDHCCHICKKVFLRYRNLVCHIKAVHEKV---RDHQCSVCGKAFADITNMKVHMRIHTGEKKYVCETCG  355 (459)
Q Consensus       279 l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~---~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~  355 (459)
                      |..|+++|.++++|.|++|++.|.....|..|++.+|...   ++|.|++|++.|.....|..|+++|+++.++.|..|+
T Consensus         3 ~~~H~~~H~~~k~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~   82 (86)
T 1x6h_A            3 SGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGPDGVEGENSG   82 (86)
T ss_dssp             TTCCSTTCCCCCCEECSSSSCEESSHHHHHHHHHHTTCSSCCCCCEECSSSCCEESCHHHHHHHHHHCCCCCSCCCCCCC
T ss_pred             cccccceecCCCCCcCCCCCCccCCHHHHHHHHHHhcCCcCCCcceECCCCCChhCCHHHHHHHHHHccCCCCcccCCCC
Confidence            5568888888888999999999999889999987556543   6788988999898888899998888888888888888


Q ss_pred             ccc
Q psy11588        356 ASF  358 (459)
Q Consensus       356 ~~f  358 (459)
                      ..|
T Consensus        83 ~~~   85 (86)
T 1x6h_A           83 PSS   85 (86)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            754

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.49  E-value=1.7e-14  Score=107.61  Aligned_cols=66  Identities=21%  Similarity=0.388  Sum_probs=57.7

Q ss_pred             CcccCCCCCcCCChHHHHHHHHhhc---CCCCccccccchhccCChHHHHHH-HHHhCCCCCcccCcccc
Q psy11588        375 NVVCSYCGNTYKNPKSLESHIRYAH---TIRQKSICDVCGKEFKMKKRLKEH-MAVHTTDRPFVCDMCPS  440 (459)
Q Consensus       375 ~~~C~~C~~~f~~~~~l~~H~~~~H---~~~~~~~C~~C~~~f~~~~~l~~H-~~~H~~~~~~~C~~C~~  440 (459)
                      +|.|+.|++.|.+...|..|++..|   .+++||.|++||+.|...+.|..| +++|++++||.|.++..
T Consensus        18 py~C~~Cgk~F~~~~~L~~H~r~~H~~~~~ekpf~C~~Cgk~F~~~~~L~~H~~r~Htgekpy~C~~~~~   87 (102)
T 2ghf_A           18 GYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYHPGEENFKLTMVKR   87 (102)
T ss_dssp             SEECSSCSCEESCHHHHHHHHHHHCSSCCCSCCEEETTTTEEESSTHHHHTHHHHTSTTCCCEEEEECCC
T ss_pred             CcCCCCCCCccCCHHHHHHHHHhhCCCCCCCCCcCCCCCCcccCCHHHHHHHHHHhcCCCCCeeCCcccC
Confidence            7888888888888889999987568   568899999999999999999999 78999999999988653

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.49  E-value=2e-14  Score=102.60  Aligned_cols=60  Identities=33%  Similarity=0.608  Sum_probs=42.8

Q ss_pred             CcccCCCCCcCCChHHHHHHHHhhcCCCCccccccchhccCChHHHHHHHHHhCCCCCccc
Q psy11588        375 NVVCSYCGNTYKNPKSLESHIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVC  435 (459)
Q Consensus       375 ~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C  435 (459)
                      +|.|++|++.|.+...|..|++ .|.++++|.|++|++.|.....|..|+++|++++||+|
T Consensus        18 ~~~C~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~p~~C   77 (77)
T 2cot_A           18 RYKCDECGKSFSHSSDLSKHRR-THTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGPSSG   77 (77)
T ss_dssp             SSBCSSSCCBCSCHHHHHHHHT-TTCCSCSEECSSSCCEESSHHHHHHHGGGSCCCCCCCC
T ss_pred             CEECCCCCcccCCHHHHHHHHH-HcCCCcCeeCCCCCCccCCHHHHHHHHHHhCCCCCCCC
Confidence            6677777777777777777776 56666677777777777777777777777777777766

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.48  E-value=8.3e-15  Score=104.64  Aligned_cols=66  Identities=24%  Similarity=0.417  Sum_probs=50.2

Q ss_pred             HHHHHhhcCCCCccccccchhccCChHHHHHHHH-HhCCC-CCcccCccccccCChHHHHHHHHHhcCC
Q psy11588        392 ESHIRYAHTIRQKSICDVCGKEFKMKKRLKEHMA-VHTTD-RPFVCDMCPSAFKLKKHLQQHYKVHLKK  458 (459)
Q Consensus       392 ~~H~~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~-~H~~~-~~~~C~~C~~~f~~~~~l~~H~~~H~~~  458 (459)
                      .+|++ .|++++||.|++|++.|.+...|..|++ .|.++ ++|.|++|++.|.+...|..|+++|++.
T Consensus         4 ~~H~~-~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~   71 (77)
T 2ct1_A            4 GSSGR-THSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSY   71 (77)
T ss_dssp             CCCCC-CCSCCCSEECTTTCCEESCHHHHHHHHHHHSSSSCSSEECSSSSCEESSHHHHHHHHHHTSCC
T ss_pred             Ccccc-ccCCCCCeECCCcCchhCCHHHHHHHHHHhcCCCCCccCCCCCCCccCCHHHHHHHHHHhCCC
Confidence            34555 6777788888888888888888888886 56654 7888888888888888888888876653

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.47  E-value=4e-14  Score=101.07  Aligned_cols=62  Identities=35%  Similarity=0.703  Sum_probs=53.8

Q ss_pred             hcCCCCccccccchhccCChHHHHHHHHHhCCCCCcccCccccccCChHHHHHHHHHhcCCC
Q psy11588        398 AHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVHLKKD  459 (459)
Q Consensus       398 ~H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~  459 (459)
                      .+.++++|.|++|++.|.....|..|+++|++++||.|++|++.|.+...|..|+++|++++
T Consensus        12 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~   73 (77)
T 2cot_A           12 QQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSG   73 (77)
T ss_dssp             CCCCSCSSBCSSSCCBCSCHHHHHHHHTTTCCSCSEECSSSCCEESSHHHHHHHGGGSCCCC
T ss_pred             cCCCCCCEECCCCCcccCCHHHHHHHHHHcCCCcCeeCCCCCCccCCHHHHHHHHHHhCCCC
Confidence            45667889999999999999999999999998899999999999999999999999888764

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=99.46  E-value=1.3e-14  Score=102.50  Aligned_cols=68  Identities=25%  Similarity=0.629  Sum_probs=60.2

Q ss_pred             HHHHHHHHhhcCCCCccccc--cchhccCChHHHHHHHHHhCCCCCcccCccccccCChHHHHHHHHHhc
Q psy11588        389 KSLESHIRYAHTIRQKSICD--VCGKEFKMKKRLKEHMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVHL  456 (459)
Q Consensus       389 ~~l~~H~~~~H~~~~~~~C~--~C~~~f~~~~~l~~H~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~  456 (459)
                      ..|..|+...|.++++|.|+  .|++.|.+...|..|+++|++++||.|++|++.|.+...|..|+++|+
T Consensus         4 ~~~~~~~~~~~~~~~~~~C~~~~C~k~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~Ht   73 (73)
T 1f2i_G            4 HPMNNLLNYVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT   73 (73)
T ss_dssp             ----CTTSCCCCCCCCEECSSTTBCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHTTCC
T ss_pred             CCccchhhccCCCCCccCCcCCCCCCccCCHHHHHHHHHhhCCCCCeECCCCCchhCCHHHHHHHHHhcC
Confidence            45666777788999999997  599999999999999999999999999999999999999999999884

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=99.45  E-value=1.2e-14  Score=115.40  Aligned_cols=80  Identities=20%  Similarity=0.350  Sum_probs=54.8

Q ss_pred             Cccccccccccc------ccchHHHHHhhhCCCCcccCCCCCcCCChHHHHHHHHhhcCCCCccccccchhccCChHHHH
Q psy11588        348 KYVCETCGASFV------QWGSLNQHNLVHTAVNVVCSYCGNTYKNPKSLESHIRYAHTIRQKSICDVCGKEFKMKKRLK  421 (459)
Q Consensus       348 ~~~C~~C~~~f~------~~~~l~~H~~~h~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~C~~~f~~~~~l~  421 (459)
                      ++.|++|++.|.      ....|..|++.+...+|.|++|++.|.....|..|++ .|  ++||.|++|++.|...+.|.
T Consensus        41 ~~~c~~~~~~~~~~~~~~~~~~l~~h~~h~~~~~~~C~~C~k~f~~~~~l~~H~~-~H--~~~~~C~~C~k~f~~~~~l~  117 (129)
T 2wbt_A           41 RLIRAIVKTLIHNPQLLDESSYLYRLLASKAISQFVCPLCLMPFSSSVSLKQHIR-YT--EHTKVCPVCKKEFTSTDSAL  117 (129)
T ss_dssp             HHHHHHHHHHHHCGGGTTTHHHHHHHHHHHHHCSEECTTTCCEESSHHHHHHHHH-HT--CCCCBCTTTCCBCSSHHHHH
T ss_pred             cccchhhhcccCCCcccCCHHHHHHHHHhCCCCCeECCCCCcccCCHhHHHHHHH-HC--CCCCCCCCCCcccCCHHHHH
Confidence            344554444433      4455556654333337777778888888888888877 56  67788888888888888888


Q ss_pred             HHHHHhCCC
Q psy11588        422 EHMAVHTTD  430 (459)
Q Consensus       422 ~H~~~H~~~  430 (459)
                      .|+++|+++
T Consensus       118 ~H~~~h~~~  126 (129)
T 2wbt_A          118 DHVCKKHNI  126 (129)
T ss_dssp             HHHHHTTCC
T ss_pred             HHHHHHCCc
Confidence            888888775

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.45  E-value=2.8e-14  Score=107.01  Aligned_cols=79  Identities=22%  Similarity=0.322  Sum_probs=64.4

Q ss_pred             cccccchHHHHHhhhCCC-CcccCCCCCcCC-ChHHHHHHHHhhcCC-CCccccccchhccCChHHHHHHHHHhCCCCCc
Q psy11588        357 SFVQWGSLNQHNLVHTAV-NVVCSYCGNTYK-NPKSLESHIRYAHTI-RQKSICDVCGKEFKMKKRLKEHMAVHTTDRPF  433 (459)
Q Consensus       357 ~f~~~~~l~~H~~~h~~~-~~~C~~C~~~f~-~~~~l~~H~~~~H~~-~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~  433 (459)
                      .+.....+..|+++|.+. +|.|++|++.|. +...|..|++ .|.+ +++|.|++|++.|.+...|..|+++|++++|+
T Consensus         5 s~~~~~~~~~h~~~h~~~~~~~C~~C~k~f~~~~~~L~~H~~-~h~~~~~~~~C~~C~k~F~~~~~L~~H~~~h~~~kp~   83 (98)
T 2gqj_A            5 SSGPGGPEEQWQRAIHERGEAVCPTCNVVTRKTLVGLKKHME-VCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSAKPS   83 (98)
T ss_dssp             CCCCCCSCSHHHHTTTTTSCCCCTTTCCCCSSCSHHHHHHHH-HHHHHHHHHSCSSSCCCCSCHHHHHHHHHHHSCSCSS
T ss_pred             CCCCCCcHHHHHHHhccCCCcCCCCCCCChhhhHHHHHHHHH-HHcCCCCCEECCCCCCccCCHHHHHHHHHHHcCCCCC
Confidence            455566777888888776 788888888888 8888888888 5555 78899999999999999999999999998886


Q ss_pred             ccC
Q psy11588        434 VCD  436 (459)
Q Consensus       434 ~C~  436 (459)
                      .-.
T Consensus        84 ~~~   86 (98)
T 2gqj_A           84 DAE   86 (98)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            543

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=99.44  E-value=6.1e-14  Score=94.70  Aligned_cols=56  Identities=32%  Similarity=0.765  Sum_probs=49.1

Q ss_pred             CccccccchhccCChHHHHHHHHHhCCCCCcccCccccccCChHHHHHHH-HHhcCC
Q psy11588        403 QKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMCPSAFKLKKHLQQHY-KVHLKK  458 (459)
Q Consensus       403 ~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~~C~~~f~~~~~l~~H~-~~H~~~  458 (459)
                      +||.|++|++.|.+...|..|+++|++++||.|++|++.|.+...|..|+ ++|.++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~   57 (60)
T 2adr_A            1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGN   57 (60)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTTSSCSEECTTTCCEESSHHHHHHHHTTTSCCS
T ss_pred             CcCcCCCCccccCCHHHHHHHHHHhCCCCCccCCCCCCccCCHHHHHHHHHHHcCCc
Confidence            47889999999999999999999999999999999999999999999997 677764

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.44  E-value=1.4e-13  Score=102.22  Aligned_cols=78  Identities=22%  Similarity=0.298  Sum_probs=61.2

Q ss_pred             ccccccchHHHHHhhhCCC-CcccCCCCCcC-CChHHHHHHHHhhcCCCCccccccchhccCChHHHHHH-HHHhCCCCC
Q psy11588        356 ASFVQWGSLNQHNLVHTAV-NVVCSYCGNTY-KNPKSLESHIRYAHTIRQKSICDVCGKEFKMKKRLKEH-MAVHTTDRP  432 (459)
Q Consensus       356 ~~f~~~~~l~~H~~~h~~~-~~~C~~C~~~f-~~~~~l~~H~~~~H~~~~~~~C~~C~~~f~~~~~l~~H-~~~H~~~~~  432 (459)
                      ..|.....|..|++.+.+. +|.|+.|++.| .+...|..|++ .| ++++|.|++|++.|.....|..| +++|+++..
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~C~~C~k~F~~~~~~L~~H~~-~h-~~k~~~C~~Cgk~F~~~~~L~~H~~~~H~~~p~   91 (96)
T 2ctd_A           14 PVYAAGSLEEQWYLEIVDKGSVSCPTCQAVGRKTIEGLKKHME-NC-KQEMFTCHHCGKQLRSLAGMKYHVMANHNSLPS   91 (96)
T ss_dssp             CSSCTTCHHHHHHHHHHHTSCEECTTTCSCEESSHHHHHHHHH-HH-CCCCCCCSSSCCCCSSHHHHHHHHHHHTCCCSS
T ss_pred             CCCCCchHHHHHHHHhcCCCCcCCCCCCCCcccCHHHHHHHHH-HH-CCCCeECCCCCCeeCCHHHHHHHhHHhcCCCCC
Confidence            4566677777777776655 78888888888 88888888888 66 78889999999999999999999 778876554


Q ss_pred             ccc
Q psy11588        433 FVC  435 (459)
Q Consensus       433 ~~C  435 (459)
                      |.+
T Consensus        92 ~~~   94 (96)
T 2ctd_A           92 GPS   94 (96)
T ss_dssp             CSC
T ss_pred             CCC
Confidence            443

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.42  E-value=2.2e-13  Score=96.27  Aligned_cols=58  Identities=28%  Similarity=0.666  Sum_probs=53.3

Q ss_pred             CcccCCCCCcCCChHHHHHHHHhhcCCCCccccccchhccCChHHHHHHHHHhCCCCCc
Q psy11588        375 NVVCSYCGNTYKNPKSLESHIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPF  433 (459)
Q Consensus       375 ~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~  433 (459)
                      +|.|+.|++.|.+...|..|++ .|.++++|+|++|++.|.....|..|+++|++++||
T Consensus        17 ~~~C~~C~k~f~~~~~l~~H~~-~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   74 (74)
T 2lce_A           17 PYKCDRCQASFRYKGNLASHKT-VHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKPY   74 (74)
T ss_dssp             SBCCTTSSCCBSCHHHHHHHHH-HHCCCCSEECTTTCCEESCHHHHHHHHHHHCCSCCC
T ss_pred             CeECCCCCceeCCHHHHHHHHH-HcCCCCCEECCCCCchhCCHHHHHHHHHhcCCCCCC
Confidence            7889999999999999999998 788889999999999999999999999999999986

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.41  E-value=1.1e-13  Score=99.07  Aligned_cols=58  Identities=21%  Similarity=0.413  Sum_probs=49.0

Q ss_pred             cCCCCccccccchhccCChHHHHHHHHHhCC---CCCcccCccccccCChHHHHHHHHHhc
Q psy11588        399 HTIRQKSICDVCGKEFKMKKRLKEHMAVHTT---DRPFVCDMCPSAFKLKKHLQQHYKVHL  456 (459)
Q Consensus       399 H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~---~~~~~C~~C~~~f~~~~~l~~H~~~H~  456 (459)
                      |++++||+|++|++.|.....|..|+++|++   +++|.|++|++.|.+...|..|++.++
T Consensus         2 h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H   62 (78)
T 2d9h_A            2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSH   62 (78)
T ss_dssp             CCSCCCEECSSSCCEESSHHHHHHHHHHHHHHTTTCCEECTTTCCEESSHHHHHHHHHHTS
T ss_pred             CCCCcCeECCCCCCeeCCHHHHHHHHHHhhccCCCcccCCCCCCchhCCHHHHHHHHHHhC
Confidence            6778888888888888888888888888885   788888888888888888888885443

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.40  E-value=1.9e-13  Score=102.01  Aligned_cols=69  Identities=16%  Similarity=0.264  Sum_probs=48.2

Q ss_pred             cCCCCccccccccccCCHHHHHHHHHHHc---CCCCccccccccccccChHHHHHH-HHHcCCCCCccccccc
Q psy11588        287 SGEKDHCCHICKKVFLRYRNLVCHIKAVH---EKVRDHQCSVCGKAFADITNMKVH-MRIHTGEKKYVCETCG  355 (459)
Q Consensus       287 ~~~~~~~C~~C~~~f~~~~~l~~H~~~~h---~~~~~~~C~~C~~~f~~~~~l~~H-~~~h~~~~~~~C~~C~  355 (459)
                      .+++||.|+.|++.|.....|..|++..|   .++++|.|++||+.|.....|..| +++|.+++||.|.++.
T Consensus        14 ~gekpy~C~~Cgk~F~~~~~L~~H~r~~H~~~~~ekpf~C~~Cgk~F~~~~~L~~H~~r~Htgekpy~C~~~~   86 (102)
T 2ghf_A           14 KVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYHPGEENFKLTMVK   86 (102)
T ss_dssp             CCCSSEECSSCSCEESCHHHHHHHHHHHCSSCCCSCCEEETTTTEEESSTHHHHTHHHHTSTTCCCEEEEECC
T ss_pred             CCCcCcCCCCCCCccCCHHHHHHHHHhhCCCCCCCCCcCCCCCCcccCCHHHHHHHHHHhcCCCCCeeCCccc
Confidence            45667777777777777777777765456   456677777777777777777777 6777777777776643

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.38  E-value=1.7e-13  Score=97.75  Aligned_cols=66  Identities=20%  Similarity=0.338  Sum_probs=46.3

Q ss_pred             HHHHHhhhCCC-CcccCCCCCcCCChHHHHHHHHhhcCCC-CccccccchhccCChHHHHHHHHHhCC
Q psy11588        364 LNQHNLVHTAV-NVVCSYCGNTYKNPKSLESHIRYAHTIR-QKSICDVCGKEFKMKKRLKEHMAVHTT  429 (459)
Q Consensus       364 l~~H~~~h~~~-~~~C~~C~~~f~~~~~l~~H~~~~H~~~-~~~~C~~C~~~f~~~~~l~~H~~~H~~  429 (459)
                      |.+|+++|.++ +|.|++|++.|.+...|..|++..|.++ ++|.|++|++.|.+...|..|+++|++
T Consensus         3 ~~~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~   70 (77)
T 2ct1_A            3 SGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHS   70 (77)
T ss_dssp             CCCCCCCCSCCCSEECTTTCCEESCHHHHHHHHHHHSSSSCSSEECSSSSCEESSHHHHHHHHHHTSC
T ss_pred             CCccccccCCCCCeECCCcCchhCCHHHHHHHHHHhcCCCCCccCCCCCCCccCCHHHHHHHHHHhCC
Confidence            34466666655 6777777777777777777776566654 677888888888888888888776554

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.37  E-value=1.7e-14  Score=101.91  Aligned_cols=72  Identities=15%  Similarity=0.133  Sum_probs=63.3

Q ss_pred             cccccchhhhhccccccccccccccchhccccccccccccCCccccchhhHhhhhHHHHHHHHhhhccCCCCCCCceeec
Q psy11588         14 SRSHLSLHLLSHSSDADEIKQELSCEQCGCSLDFHSALYTKDVYHCADCEQVFLDKFVLELHLKIEHKDNMFPKSHWFVC   93 (459)
Q Consensus        14 ~~~~l~~H~~~h~~~~~~~~~~~~C~~C~~~f~~~~~l~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~~C   93 (459)
                      +.+.|..|+++|.+     +++|.|++|++.|.....|..+++|.|++|++.|.....|..|+++|++++      +|.|
T Consensus         2 ~~~~l~~H~~~h~~-----~~~~~C~~C~k~f~~~~~l~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~------~~~C   70 (73)
T 2ctu_A            2 SSGSSGKRQKIHLG-----DRSQKCSKCGIIFIRRSTLSRRKTPMCEKCRKDSCQEAALNKDEGNESGKK------TSGP   70 (73)
T ss_dssp             CCCSCCCCCCCCCC-----CSEEECSSSCCEEECCCCCCCSSSCCCHHHHHTCSCCCSSCCCSSCCCCCC------CSSC
T ss_pred             cchhHHHHHHHhCC-----CCCeeCCcccchhCCHHHhCcCCCCCCCCCChhhcCHHHHHHHHHhhcCCC------CCCC
Confidence            56789999999998     789999999999999999988788888888888888888888888888776      6788


Q ss_pred             ccC
Q psy11588         94 KMC   96 (459)
Q Consensus        94 ~~C   96 (459)
                      ++|
T Consensus        71 ~~C   73 (73)
T 2ctu_A           71 SSG   73 (73)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            877

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=99.35  E-value=8.6e-13  Score=87.92  Aligned_cols=56  Identities=34%  Similarity=0.637  Sum_probs=52.2

Q ss_pred             CcccCCCCCcCCChHHHHHHHHhhcCCCCccccccchhccCChHHHHHHHHHhCCCC
Q psy11588        375 NVVCSYCGNTYKNPKSLESHIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDR  431 (459)
Q Consensus       375 ~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~  431 (459)
                      +|.|+.|++.|.+...|..|++ .|.+++||.|++|++.|.+...|..|+++|++++
T Consensus         1 p~~C~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k   56 (57)
T 1bbo_A            1 KYICEECGIRXKKPSMLKKHIR-THTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK   56 (57)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHH-HTSSCCCEECSSSSCEESSHHHHHHHHHSSSSCC
T ss_pred             CCcCCCCcCcCCCHHHHHHHHH-hcCCCCCccCCCCCchhcCHHHHHHHHHHhcccC
Confidence            5889999999999999999998 7889999999999999999999999999998875

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.35  E-value=6.5e-13  Score=92.71  Aligned_cols=58  Identities=24%  Similarity=0.366  Sum_probs=51.2

Q ss_pred             CcccCCCCCcCCChHHHHHHHHhhcCCCCccccccchhccCChHHHHHHHHHhCCCCCc
Q psy11588        375 NVVCSYCGNTYKNPKSLESHIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPF  433 (459)
Q Consensus       375 ~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~  433 (459)
                      +|.|++|++.|.+...|..|++ .|.++++|.|++|++.|.....|..|+++|++++|.
T Consensus         9 ~~~C~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~p~   66 (70)
T 1x5w_A            9 PEKCSECSYSCSSKAALRIHER-IHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGDMSG   66 (70)
T ss_dssp             SEECSSSSCEESSHHHHHHHHG-GGCCSCSEECSSSSCEESSHHHHHHHHHHHHSSSCC
T ss_pred             CeECCCCCcccCCHHHHHHHHH-HcCCCCCEeCCCCCCccCCHHHHHHHHHHHhCCCCC
Confidence            7888888888888888888888 688888999999999999999999999999988875

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.34  E-value=5.1e-13  Score=93.83  Aligned_cols=62  Identities=29%  Similarity=0.516  Sum_probs=50.2

Q ss_pred             hhhCCC-CcccCCCCCcCCChHHHHHHHHhhcCCCCccccccchhccCChHHHHHHHHHhCCCC
Q psy11588        369 LVHTAV-NVVCSYCGNTYKNPKSLESHIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDR  431 (459)
Q Consensus       369 ~~h~~~-~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~  431 (459)
                      ++|.+. +|.|++|++.|.+...|..|++ .|.+++||+|++|++.|.....|..|+++|+++.
T Consensus         7 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~-~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~   69 (72)
T 1x6e_A            7 GIHSGEKPYGCVECGKAFSRSSILVQHQR-VHTGEKPYKCLECGKAFSQNSGLINHQRIHTSGP   69 (72)
T ss_dssp             CTTTTCCCEECSSSCCEESSHHHHHHHHH-GGGCSCCEECSSSCCEESSHHHHHHHHHHHHSSS
T ss_pred             cccCCCCCccCCCCCCccCCHHHHHHHHH-hcCCCCCeECCCCCcccCCHHHHHHHHHhcCCCC
Confidence            345555 7788888888888888888887 6777888999999999999999999988887764

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.33  E-value=1.7e-12  Score=96.71  Aligned_cols=62  Identities=26%  Similarity=0.392  Sum_probs=56.3

Q ss_pred             CcccCCCCCcCCChHHHHHHHHhhcCCCCc--------cccccchhccCChHHHHHHHHHhCCCCCcccC
Q psy11588        375 NVVCSYCGNTYKNPKSLESHIRYAHTIRQK--------SICDVCGKEFKMKKRLKEHMAVHTTDRPFVCD  436 (459)
Q Consensus       375 ~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~--------~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~  436 (459)
                      .+.|+.|++.|.+...|..|++..|.++++        |.|++|++.|.+...|..|+++|++++||.|+
T Consensus        25 ~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~~~c~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   94 (95)
T 2ej4_A           25 SRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKSGPSS   94 (95)
T ss_dssp             SSSCCCCCCCCSSHHHHHHHHHHTTTCCTTCSCCCCCCTTCSSTTCCCSSHHHHHHHHHHHHTCCCCSSC
T ss_pred             CCcccccccccCCHHHHHHHHHHhccCCCCCCccceeccCCCCCCcccCCHHHHHHHHHhcCCCCCCCCC
Confidence            467999999999999999999855888877        99999999999999999999999999999996

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.33  E-value=4.2e-15  Score=105.10  Aligned_cols=67  Identities=16%  Similarity=0.314  Sum_probs=47.5

Q ss_pred             HHHHHhhhCCC-CcccCCCCCcCCChHHHHHHHHhhcCCCCccccccchhccCChHHHHHHHHHhCCCCCcccCcc
Q psy11588        364 LNQHNLVHTAV-NVVCSYCGNTYKNPKSLESHIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMC  438 (459)
Q Consensus       364 l~~H~~~h~~~-~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~~C  438 (459)
                      |..|+++|.+. +|.|++|++.|.+...|..        +++|.|++|++.|.....|..|+++|++++||.|++|
T Consensus         6 l~~H~~~h~~~~~~~C~~C~k~f~~~~~l~~--------~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~~C   73 (73)
T 2ctu_A            6 SGKRQKIHLGDRSQKCSKCGIIFIRRSTLSR--------RKTPMCEKCRKDSCQEAALNKDEGNESGKKTSGPSSG   73 (73)
T ss_dssp             CCCCCCCCCCCSEEECSSSCCEEECCCCCCC--------SSSCCCHHHHHTCSCCCSSCCCSSCCCCCCCSSCCCC
T ss_pred             HHHHHHHhCCCCCeeCCcccchhCCHHHhCc--------CCCCCCCCCChhhcCHHHHHHHHHhhcCCCCCCCCCC
Confidence            34444444433 4444444444444443333        5789999999999999999999999999999999987

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=99.32  E-value=9e-13  Score=90.81  Aligned_cols=60  Identities=20%  Similarity=0.382  Sum_probs=47.6

Q ss_pred             hhCCC-CcccCCCCCcCCChHHHHHHHHhhc-CCCCccccccchhccCChHHHHHHHHHhCC
Q psy11588        370 VHTAV-NVVCSYCGNTYKNPKSLESHIRYAH-TIRQKSICDVCGKEFKMKKRLKEHMAVHTT  429 (459)
Q Consensus       370 ~h~~~-~~~C~~C~~~f~~~~~l~~H~~~~H-~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~  429 (459)
                      +|.+. +|.|+.|++.|.+...|..|++..| .+++||.|++|++.|.+.+.|..|+++|++
T Consensus         4 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~H~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~   65 (66)
T 2drp_A            4 TKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHK   65 (66)
T ss_dssp             EEEETTEEECTTTCCEESSHHHHHHHHHHHSSSSCCCEECTTTCCEESCHHHHHHHHHHHTC
T ss_pred             ccCCCcceECCCCcchhCCHHHHHHHHHHHcCCCCcCeECCCCCCccCCHHHHHHHHHHHcC
Confidence            34444 6778888888888888888887557 578888888888888888888888888876

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=99.29  E-value=2.4e-12  Score=85.75  Aligned_cols=55  Identities=29%  Similarity=0.579  Sum_probs=46.7

Q ss_pred             CCcccCCCCCcCCChHHHHHHHHhhcCCCCccccccchhccCChHHHHHHHHHhCC
Q psy11588        374 VNVVCSYCGNTYKNPKSLESHIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTT  429 (459)
Q Consensus       374 ~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~  429 (459)
                      .+|.|++|++.|.+...|..|++ .|.+++||.|++|++.|.....|..|+++|++
T Consensus         3 ~~~~C~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~   57 (57)
T 3uk3_C            3 SSRECSYCGKFFRSNYYLNIHLR-THTGEKPYKCEFCEYAAAQKTSLRYHLERHHK   57 (57)
T ss_dssp             --CBCTTTCCBCSCHHHHHHHHH-HHHCCCCEECSSSSCEESSHHHHHHHHHHHC-
T ss_pred             CCccCCCCcchhCChHHHHHHHH-HcCCCCCcCCCCCcchhCCHHHHHHHHHHhcC
Confidence            36888899999999999999988 78888899999999999999999999998874

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.28  E-value=1.3e-12  Score=89.90  Aligned_cols=58  Identities=21%  Similarity=0.380  Sum_probs=51.1

Q ss_pred             cCCCCccccccchhccCChHHHHHHHHHhCCCCCcccC-ccccccCChHHHHHHHHHhcCC
Q psy11588        399 HTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCD-MCPSAFKLKKHLQQHYKVHLKK  458 (459)
Q Consensus       399 H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~-~C~~~f~~~~~l~~H~~~H~~~  458 (459)
                      ..+.+||.|++|++.|. ...|..|+++ ++++||.|+ .|+++|...+.|..|+++|..+
T Consensus         5 ~C~~~~~~C~~C~k~f~-~~~L~~H~~~-~~~~p~~C~~~C~k~f~~~~~L~~H~~~hc~~   63 (66)
T 2eod_A            5 SSGKRTQPCTYCTKEFV-FDTIQSHQYQ-CPRLPVACPNQCGVGTVAREDLPGHLKDSCNT   63 (66)
T ss_dssp             CCCCCEEECSSSCCEEE-HHHHHHHHHH-CSSSEEECTTCCSCCEEETTTHHHHHHTTSSS
T ss_pred             cCCCCCeeccccCCccC-HHHHHHHHHH-cCCcCccCCcccCcccccHHHHHHHHHhhccc
Confidence            34578899999999999 9999999998 899999999 9999999999999999988654

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.28  E-value=3.4e-12  Score=91.61  Aligned_cols=59  Identities=24%  Similarity=0.407  Sum_probs=49.0

Q ss_pred             CcccccccChhcccCHHHHHHHHhhccCCCCccccccccccCCHHHHHHHHHHHcCCCC
Q psy11588        261 KVNYKCPDCSAILLSYGGFTSHLDIHSGEKDHCCHICKKVFLRYRNLVCHIKAVHEKVR  319 (459)
Q Consensus       261 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~  319 (459)
                      ..+|.|++|++.|.+...|..|+++|++++||.|++|++.|.....|..|++..|+++.
T Consensus        26 ~~~h~C~~Cgk~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~~E~   84 (85)
T 2lv2_A           26 AECHLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHINKCHPSEN   84 (85)
T ss_dssp             CTTEECTTSCCEESSHHHHHHHHHTTSCSSSEECTTSSCEESSHHHHHHHHHTTCTTCC
T ss_pred             CCCEECCCCCCCcCcHHHHhhhhhhccCCCccCCCCCCCEeCCHHHHHHhCcccCcCCC
Confidence            45688888888888888888888888888888888888888888888888876777653

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=99.23  E-value=5e-12  Score=88.71  Aligned_cols=58  Identities=31%  Similarity=0.676  Sum_probs=52.8

Q ss_pred             hcCCCCcccccc--chhccCChHHHHHHHHHhCCCCCcccCc--cccccCChHHHHHHHHHh
Q psy11588        398 AHTIRQKSICDV--CGKEFKMKKRLKEHMAVHTTDRPFVCDM--CPSAFKLKKHLQQHYKVH  455 (459)
Q Consensus       398 ~H~~~~~~~C~~--C~~~f~~~~~l~~H~~~H~~~~~~~C~~--C~~~f~~~~~l~~H~~~H  455 (459)
                      .....++|.|++  |++.|.....|..|+++|++++||.|++  |++.|.+...|..|+++|
T Consensus        11 ~~~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~f~~~~~l~~H~~~H   72 (72)
T 2epa_A           11 DSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH   72 (72)
T ss_dssp             CCCCCCCEECSSTTTCCEESSHHHHHHHHHHHSSSCSEECCCTTCCCEESSHHHHHHHTTTC
T ss_pred             CccccCceeCCCCCCccccCCHHHHHHHHHhcCCCCCccCCCCCCCcccCCHHHHHhHhhcC
Confidence            345678899998  9999999999999999999999999975  999999999999999876

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=99.22  E-value=9.8e-12  Score=83.66  Aligned_cols=55  Identities=25%  Similarity=0.631  Sum_probs=47.7

Q ss_pred             CcccCCCCCcCCChHHHHHHHHhhcCCCCccccccchhccCChHHHHHHH-HHhCCC
Q psy11588        375 NVVCSYCGNTYKNPKSLESHIRYAHTIRQKSICDVCGKEFKMKKRLKEHM-AVHTTD  430 (459)
Q Consensus       375 ~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~C~~~f~~~~~l~~H~-~~H~~~  430 (459)
                      +|.|+.|++.|.+...|..|++ .|.+++||.|++|++.|.+...|..|+ ++|.++
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~   57 (60)
T 2adr_A            2 SFVCEVCTRAFARQEHLKRHYR-SHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGN   57 (60)
T ss_dssp             CBCCTTTCCCBSCHHHHHHHHH-TTTSSCSEECTTTCCEESSHHHHHHHHTTTSCCS
T ss_pred             cCcCCCCccccCCHHHHHHHHH-HhCCCCCccCCCCCCccCCHHHHHHHHHHHcCCc
Confidence            5888999999999999999988 688888999999999999999999997 577665

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=99.22  E-value=2.2e-12  Score=90.86  Aligned_cols=67  Identities=30%  Similarity=0.573  Sum_probs=48.7

Q ss_pred             HHHHHHHHHcCCCCccccc--cccccccChHHHHHHHHHcCCCCCcccccccccccccchHHHHHhhhC
Q psy11588        306 NLVCHIKAVHEKVRDHQCS--VCGKAFADITNMKVHMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT  372 (459)
Q Consensus       306 ~l~~H~~~~h~~~~~~~C~--~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~  372 (459)
                      .|..|+...|.++++|.|+  .|++.|.....|..|+++|.++++|.|++|++.|.....|..|+++|+
T Consensus         5 ~~~~~~~~~~~~~~~~~C~~~~C~k~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~Ht   73 (73)
T 1f2i_G            5 PMNNLLNYVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT   73 (73)
T ss_dssp             ---CTTSCCCCCCCCEECSSTTBCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHTTCC
T ss_pred             CccchhhccCCCCCccCCcCCCCCCccCCHHHHHHHHHhhCCCCCeECCCCCchhCCHHHHHHHHHhcC
Confidence            3445555567777778886  488888888888888888888888888888888888888888877663

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.20  E-value=1.3e-11  Score=88.08  Aligned_cols=23  Identities=26%  Similarity=0.628  Sum_probs=10.5

Q ss_pred             CCccccccchhccCChHHHHHHH
Q psy11588        402 RQKSICDVCGKEFKMKKRLKEHM  424 (459)
Q Consensus       402 ~~~~~C~~C~~~f~~~~~l~~H~  424 (459)
                      +++|.|++|++.|.....|..|+
T Consensus        36 ~~~~~C~~C~k~f~~~~~L~~H~   58 (78)
T 2d9h_A           36 ALRFPCEFCGKRFEKPDSVAAHR   58 (78)
T ss_dssp             TCCEECTTTCCEESSHHHHHHHH
T ss_pred             CcccCCCCCCchhCCHHHHHHHH
Confidence            34444444444444444444444

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.19  E-value=1e-11  Score=81.46  Aligned_cols=47  Identities=32%  Similarity=0.645  Sum_probs=43.7

Q ss_pred             hcCCCCccccccchhccCChHHHHHHHH-HhCCCCCcccCccccccCC
Q psy11588        398 AHTIRQKSICDVCGKEFKMKKRLKEHMA-VHTTDRPFVCDMCPSAFKL  444 (459)
Q Consensus       398 ~H~~~~~~~C~~C~~~f~~~~~l~~H~~-~H~~~~~~~C~~C~~~f~~  444 (459)
                      .|.+++||.|++|++.|.....|..|++ +|.+++||.|++|++.|.+
T Consensus         6 ~~~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C~k~F~~   53 (54)
T 2eps_A            6 SGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS   53 (54)
T ss_dssp             CCCSSCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSSSSCCSSCC
T ss_pred             CCCCCCCeECCCCCcccCCHHHHHHHHHHhcCCCCCccCCCCCCCCCC
Confidence            4678899999999999999999999997 8999999999999999976

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.17  E-value=5.9e-12  Score=78.74  Aligned_cols=41  Identities=22%  Similarity=0.299  Sum_probs=39.1

Q ss_pred             hcCCCCccccccchhccCChHHHHHHHHHhCCCCCcccCcc
Q psy11588        398 AHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMC  438 (459)
Q Consensus       398 ~H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~~C  438 (459)
                      .|++++||.|++||+.|.+.+.|..|+++|++++||.|++|
T Consensus         4 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   44 (44)
T 2emx_A            4 GSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGPSSG   44 (44)
T ss_dssp             CCSSCCCEECSSSSCEESSHHHHHHHHHHHTSSCSCSCCCC
T ss_pred             CcCCCcCccCCCCCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            68899999999999999999999999999999999999987

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=99.17  E-value=7e-12  Score=79.22  Aligned_cols=44  Identities=25%  Similarity=0.314  Sum_probs=40.7

Q ss_pred             HHHhhcCCCCccccccchhccCChHHHHHHHHHhCCCCCcccCcc
Q psy11588        394 HIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMC  438 (459)
Q Consensus       394 H~~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~~C  438 (459)
                      |++ .|++++||.|++|++.|.+.+.|..|+++|++++||+|++|
T Consensus         3 H~~-~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ely_A            3 SGS-SGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGPSSG   46 (46)
T ss_dssp             CCC-CCCCCCSBCCSSSCCCBSSTTHHHHHHHHHSCCSSCSCCCC
T ss_pred             CCC-CCCCCCCcccCccCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            455 78899999999999999999999999999999999999987

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.17  E-value=7.3e-12  Score=79.16  Aligned_cols=44  Identities=23%  Similarity=0.284  Sum_probs=40.7

Q ss_pred             HHHhhcCCCCccccccchhccCChHHHHHHHHHhCCCCCcccCcc
Q psy11588        394 HIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMC  438 (459)
Q Consensus       394 H~~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~~C  438 (459)
                      |++ .|++++||.|++|++.|.+.+.|..|+++|++++||.|++|
T Consensus         3 H~~-~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eq4_A            3 SGS-SGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGPSSG   46 (46)
T ss_dssp             CCC-CSSCCCCCCBTTTTBCCSCHHHHHHHHHHCCSSSCCCCCCC
T ss_pred             Ccc-cCCCCCCeECCCCCCccCchHHHHHHHHhcCCCCCCCCCCC
Confidence            555 78899999999999999999999999999999999999987

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=99.17  E-value=7.6e-12  Score=79.07  Aligned_cols=44  Identities=27%  Similarity=0.361  Sum_probs=40.6

Q ss_pred             HHHhhcCCCCccccccchhccCChHHHHHHHHHhCCCCCcccCcc
Q psy11588        394 HIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMC  438 (459)
Q Consensus       394 H~~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~~C  438 (459)
                      |++ .|++++||.|++|++.|...+.|..|+++|++++||.|++|
T Consensus         3 H~~-~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emk_A            3 SGS-SGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCC-CCSSSCSCBCSSSCCBCSCHHHHHHHHHHHSSCCCSSCCCC
T ss_pred             CCC-ccCCCCceECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            555 78889999999999999999999999999999999999987

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=7.4e-12  Score=79.15  Aligned_cols=44  Identities=25%  Similarity=0.332  Sum_probs=40.9

Q ss_pred             HHHhhcCCCCccccccchhccCChHHHHHHHHHhCCCCCcccCcc
Q psy11588        394 HIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMC  438 (459)
Q Consensus       394 H~~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~~C  438 (459)
                      |++ .|++++||.|++|++.|...+.|..|+++|++++||.|++|
T Consensus         3 H~~-~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eoe_A            3 SGS-SGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGPSSG   46 (46)
T ss_dssp             CSS-CCCCCCSSEETTTTEECSSHHHHHHHHGGGSCCCSCSSCCC
T ss_pred             CCC-CCCCCCCeECCCcChhhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            555 78899999999999999999999999999999999999988

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=7.1e-12  Score=79.22  Aligned_cols=44  Identities=25%  Similarity=0.370  Sum_probs=40.7

Q ss_pred             HHHhhcCCCCccccccchhccCChHHHHHHHHHhCCCCCcccCcc
Q psy11588        394 HIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMC  438 (459)
Q Consensus       394 H~~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~~C  438 (459)
                      |++ .|++++||.|++|++.|.+.+.|..|+++|++++||.|++|
T Consensus         3 H~~-~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emm_A            3 SGS-SGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCS-CSSCCCSEECSSSCCEESSHHHHHHHHHHHSCCCTTSSSCC
T ss_pred             CcC-CcCCCCCeeCCCCChhhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            555 78899999999999999999999999999999999999988

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=9.1e-12  Score=78.72  Aligned_cols=44  Identities=30%  Similarity=0.342  Sum_probs=40.5

Q ss_pred             HHHhhcCCCCccccccchhccCChHHHHHHHHHhCCCCCcccCcc
Q psy11588        394 HIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMC  438 (459)
Q Consensus       394 H~~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~~C  438 (459)
                      |++ .|++++||.|++|++.|.+.+.|..|+++|++++||.|++|
T Consensus         3 H~~-~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eov_A            3 SGS-SGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGPSSG   46 (46)
T ss_dssp             CCC-CCSSCCSCBCSSSCCBCSSHHHHHHHHHHHSCCSSCCSCCC
T ss_pred             CCC-CCCCCCCccCCccChhhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            555 78889999999999999999999999999999999999987

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=8.4e-12  Score=78.86  Aligned_cols=44  Identities=32%  Similarity=0.461  Sum_probs=40.3

Q ss_pred             HHHhhcCCCCccccccchhccCChHHHHHHHHHhCCCCCcccCcc
Q psy11588        394 HIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMC  438 (459)
Q Consensus       394 H~~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~~C  438 (459)
                      |++ .|++++||.|++|++.|...+.|..|+++|++++||.|++|
T Consensus         3 H~~-~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoq_A            3 SGS-SGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPSSG   46 (46)
T ss_dssp             CCC-CSSSSCSCCCSSSCCCCSSHHHHHHHHHHTTCCCSSSCCCC
T ss_pred             CCC-CCCCCCCcCCCcCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            555 78889999999999999999999999999999999999987

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=6.9e-12  Score=79.26  Aligned_cols=44  Identities=25%  Similarity=0.391  Sum_probs=40.4

Q ss_pred             HHHhhcCCCCccccccchhccCChHHHHHHHHHhCCCCCcccCcc
Q psy11588        394 HIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMC  438 (459)
Q Consensus       394 H~~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~~C  438 (459)
                      |++ .|++++||.|++|++.|...+.|..|+++|++++||.|++|
T Consensus         3 H~~-~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytn_A            3 SGS-SGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCC-CCSCCSSCBCTTTCCBCSSHHHHHHHGGGTSCCCCCSCCCC
T ss_pred             CCc-CCCCCcCeECCCCCCeeCCHHHHHHHhhhcCCCCCCCCCCC
Confidence            455 78889999999999999999999999999999999999987

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=7.4e-12  Score=79.13  Aligned_cols=44  Identities=25%  Similarity=0.311  Sum_probs=40.7

Q ss_pred             HHHhhcCCCCccccccchhccCChHHHHHHHHHhCCCCCcccCcc
Q psy11588        394 HIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMC  438 (459)
Q Consensus       394 H~~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~~C  438 (459)
                      |++ .|++++||.|++||+.|...+.|..|+++|++++||.|++|
T Consensus         3 H~~-~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emy_A            3 SGS-SGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGPSSG   46 (46)
T ss_dssp             CCC-CCCSSCCEECSSSCCEESSHHHHHHHHHHHTTSCCSCSSCC
T ss_pred             CCC-CCCCCcCcCCCCCCcccCcHHHHHHHHHHcCCCCCCCCCCC
Confidence            555 78889999999999999999999999999999999999987

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=7e-12  Score=79.23  Aligned_cols=44  Identities=25%  Similarity=0.386  Sum_probs=40.7

Q ss_pred             HHHhhcCCCCccccccchhccCChHHHHHHHHHhCCCCCcccCcc
Q psy11588        394 HIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMC  438 (459)
Q Consensus       394 H~~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~~C  438 (459)
                      |++ .|++++||.|++|++.|...+.|..|+++|++++||.|++|
T Consensus         3 H~~-~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eml_A            3 SGS-SGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGPSSG   46 (46)
T ss_dssp             CCC-CCSSCCSEECSSSCCEESSHHHHHHHHGGGSSCCCSCSSCC
T ss_pred             ccC-CcCCCCCeeCCCcCCccCCHHHHHHHHHHhcCCCCCCCCCC
Confidence            555 78899999999999999999999999999999999999987

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=99.15  E-value=7.2e-12  Score=79.19  Aligned_cols=44  Identities=18%  Similarity=0.200  Sum_probs=40.4

Q ss_pred             HHHhhcCCCCccccccchhccCChHHHHHHHHHhCCCCCcccCcc
Q psy11588        394 HIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMC  438 (459)
Q Consensus       394 H~~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~~C  438 (459)
                      |++ .|++++||+|++|++.|...+.|..|+++|++++||.|++|
T Consensus         3 H~~-~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em0_A            3 SGS-SGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGPSSG   46 (46)
T ss_dssp             CCC-CSCCCCCCCCSSSCCCCSSHHHHHHHGGGGSSSSCSCSSCC
T ss_pred             CcC-ccCCCcCeECCCCCcccCCHHHHHHHHHHcCCCCCcCCCCC
Confidence            555 78889999999999999999999999999999999999987

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=1e-11  Score=78.51  Aligned_cols=44  Identities=27%  Similarity=0.440  Sum_probs=40.6

Q ss_pred             HHHhhcCCCCccccccchhccCChHHHHHHHHHhCCCCCcccCcc
Q psy11588        394 HIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMC  438 (459)
Q Consensus       394 H~~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~~C  438 (459)
                      |++ .|++++||.|++|++.|...+.|..|+++|++++||.|++|
T Consensus         3 H~~-~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ytj_A            3 SGS-SGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGPSSG   46 (46)
T ss_dssp             SSC-TTSSCCSEECSSSCCEESSHHHHHHHHHHTSCCCCSSCSCC
T ss_pred             ccc-CCCCCcCeECCCCChhhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            555 78889999999999999999999999999999999999987

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=7.1e-12  Score=79.21  Aligned_cols=44  Identities=25%  Similarity=0.398  Sum_probs=40.8

Q ss_pred             HHHhhcCCCCccccccchhccCChHHHHHHHHHhCCCCCcccCcc
Q psy11588        394 HIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMC  438 (459)
Q Consensus       394 H~~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~~C  438 (459)
                      |++ .|++++||.|++|++.|...+.|..|+++|++++||+|++|
T Consensus         3 H~~-~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emp_A            3 SGS-SGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCS-CSSCCCSEECSSSCCEESCHHHHHHHHHHHHCCSCCSCCCC
T ss_pred             ccc-ccCCCcCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            555 78899999999999999999999999999999999999987

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=6.9e-12  Score=79.26  Aligned_cols=44  Identities=25%  Similarity=0.373  Sum_probs=40.7

Q ss_pred             HHHhhcCCCCccccccchhccCChHHHHHHHHHhCCCCCcccCcc
Q psy11588        394 HIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMC  438 (459)
Q Consensus       394 H~~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~~C  438 (459)
                      |++ .|++++||.|++|++.|...+.|..|+++|++++||.|++|
T Consensus         3 H~~-~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ene_A            3 SGS-SGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCS-SCCCSSSEECSSSCCEESSHHHHHHHHTTTCCCCCCSCCCC
T ss_pred             ccc-CCCCCCCeECCCCCchhCChHHHHHHHhhcCCCCCCCCCCC
Confidence            555 78899999999999999999999999999999999999988

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=9.4e-12  Score=78.64  Aligned_cols=44  Identities=27%  Similarity=0.363  Sum_probs=40.7

Q ss_pred             HHHhhcCCCCccccccchhccCChHHHHHHHHHhCCCCCcccCcc
Q psy11588        394 HIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMC  438 (459)
Q Consensus       394 H~~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~~C  438 (459)
                      |++ .|++++||.|++|++.|.+.+.|..|+++|++++||.|++|
T Consensus         3 H~~-~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytd_A            3 SGS-SGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPSSG   46 (46)
T ss_dssp             CCC-CSCCCCSEECSSSCCEESSHHHHHHHHHHHTCCCSSCSSCC
T ss_pred             Ccc-ccCCCcCeECCCCCCeeCChHHHHHHHHHcCCCCCCCCCCC
Confidence            455 78889999999999999999999999999999999999987

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.15  E-value=4.9e-11  Score=88.69  Aligned_cols=57  Identities=23%  Similarity=0.345  Sum_probs=53.2

Q ss_pred             CccccccchhccCChHHHHHHHHH-hCCCCC--------cccCccccccCChHHHHHHHHHhcCCC
Q psy11588        403 QKSICDVCGKEFKMKKRLKEHMAV-HTTDRP--------FVCDMCPSAFKLKKHLQQHYKVHLKKD  459 (459)
Q Consensus       403 ~~~~C~~C~~~f~~~~~l~~H~~~-H~~~~~--------~~C~~C~~~f~~~~~l~~H~~~H~~~~  459 (459)
                      ..|.|+.|++.|.+...|..|+++ |.++++        |.|++|++.|.+...|..|+++|++++
T Consensus        24 ~~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~~~c~~~~C~~C~k~f~~~~~L~~H~~~H~~~k   89 (95)
T 2ej4_A           24 LSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEK   89 (95)
T ss_dssp             SSSSCCCCCCCCSSHHHHHHHHHHTTTCCTTCSCCCCCCTTCSSTTCCCSSHHHHHHHHHHHHTCC
T ss_pred             CCCcccccccccCCHHHHHHHHHHhccCCCCCCccceeccCCCCCCcccCCHHHHHHHHHhcCCCC
Confidence            357899999999999999999998 988888        999999999999999999999999864

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=8.5e-12  Score=78.84  Aligned_cols=44  Identities=25%  Similarity=0.280  Sum_probs=40.3

Q ss_pred             HHHhhcCCCCccccccchhccCChHHHHHHHHHhCCCCCcccCcc
Q psy11588        394 HIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMC  438 (459)
Q Consensus       394 H~~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~~C  438 (459)
                      |++ .|++++||.|++|++.|.....|..|+++|++++||+|++|
T Consensus         3 H~~-~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epz_A            3 SGS-SGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCS-SCCCCCSBCCTTTCCCBSSHHHHHHHHTTTTTCCCCSSCCC
T ss_pred             CCC-CcCCCCCeECCCCCceeCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            455 78889999999999999999999999999999999999987

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=8.8e-12  Score=78.76  Aligned_cols=44  Identities=27%  Similarity=0.422  Sum_probs=40.6

Q ss_pred             HHHhhcCCCCccccccchhccCChHHHHHHHHHhCCCCCcccCcc
Q psy11588        394 HIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMC  438 (459)
Q Consensus       394 H~~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~~C  438 (459)
                      |++ .|++++||.|++|++.|...+.|..|+++|++++||.|++|
T Consensus         3 H~~-~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ep2_A            3 SGS-SGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGPSSG   46 (46)
T ss_dssp             SSS-CSSCCCSEECSSSCCEESSHHHHHHHHHTTSSCCSCCSCCC
T ss_pred             CCC-CCCCCcCcCCCCCCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            555 78899999999999999999999999999999999999987

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=99.14  E-value=6.7e-12  Score=79.34  Aligned_cols=44  Identities=25%  Similarity=0.242  Sum_probs=40.7

Q ss_pred             HHHhhcCCCCccccccchhccCChHHHHHHHHHhCCCCCcccCcc
Q psy11588        394 HIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMC  438 (459)
Q Consensus       394 H~~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~~C  438 (459)
                      |++ .|++++||.|++|++.|...+.|..|+++|++++||.|++|
T Consensus         3 H~~-~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2el4_A            3 SGS-SGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGPSSG   46 (46)
T ss_dssp             CCC-CSCCCCSEECSSSSCEESSHHHHHHHGGGSSSCCCSCCTTC
T ss_pred             ccc-CCCCCCceECCCCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            555 78899999999999999999999999999999999999987

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=7.2e-12  Score=79.18  Aligned_cols=44  Identities=20%  Similarity=0.270  Sum_probs=40.8

Q ss_pred             HHHhhcCCCCccccccchhccCChHHHHHHHHHhCCCCCcccCcc
Q psy11588        394 HIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMC  438 (459)
Q Consensus       394 H~~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~~C  438 (459)
                      |++ .|++++||.|++||+.|.+.+.|..|+++|++++||.|++|
T Consensus         3 H~~-~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoo_A            3 SGS-SGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGPSSG   46 (46)
T ss_dssp             CCC-CCSCCCCEECSSSCCEESSHHHHHHHHHHHHSTTSSCCSCC
T ss_pred             CCC-CCCCCCCEEccccCcccCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            555 78899999999999999999999999999999999999987

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=8.8e-12  Score=78.78  Aligned_cols=44  Identities=25%  Similarity=0.354  Sum_probs=40.4

Q ss_pred             HHHhhcCCCCccccccchhccCChHHHHHHHHHhCCCCCcccCcc
Q psy11588        394 HIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMC  438 (459)
Q Consensus       394 H~~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~~C  438 (459)
                      |++ .|++++||.|++|++.|.....|..|+++|++++||.|++|
T Consensus         3 H~~-~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eop_A            3 SGS-SGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGPSSG   46 (46)
T ss_dssp             CCC-SCCCCCSCBCTTTCCBCSSHHHHHHHHTTTTTSCCSCCCCC
T ss_pred             Ccc-ccCCCCCeeCCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            555 78889999999999999999999999999999999999987

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=8.9e-12  Score=78.75  Aligned_cols=44  Identities=23%  Similarity=0.370  Sum_probs=40.6

Q ss_pred             HHHhhcCCCCccccccchhccCChHHHHHHHHHhCCCCCcccCcc
Q psy11588        394 HIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMC  438 (459)
Q Consensus       394 H~~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~~C  438 (459)
                      |++ .|++++||.|++|++.|...+.|..|+++|++++||.|++|
T Consensus         3 H~~-~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~c   46 (46)
T 2ytk_A            3 SGS-SGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCC-CSSSSCSEECSSSCCEESSHHHHHHHHHHHSSSSCSSCCCC
T ss_pred             Ccc-cCCCCCCEeCCcCCCccCCHHHHHHHHHHHCCCCCCCCCCC
Confidence            555 78889999999999999999999999999999999999987

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=9.9e-12  Score=78.54  Aligned_cols=44  Identities=25%  Similarity=0.440  Sum_probs=40.5

Q ss_pred             HHHhhcCCCCccccccchhccCChHHHHHHHHHhCCCCCcccCcc
Q psy11588        394 HIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMC  438 (459)
Q Consensus       394 H~~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~~C  438 (459)
                      |++ .|++++||.|++|++.|.+.+.|..|+++|++++||.|++|
T Consensus         3 H~~-~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eme_A            3 SGS-SGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCC-TTCCCCSEECSSSCCEESSHHHHHHHHGGGCCCSCCSSCCC
T ss_pred             CCC-CCCCCCCeECCCCChhhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            555 78889999999999999999999999999999999999987

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=9.6e-12  Score=78.58  Aligned_cols=44  Identities=25%  Similarity=0.309  Sum_probs=40.2

Q ss_pred             HHHhhcCCCCccccccchhccCChHHHHHHHHHhCCCCCcccCcc
Q psy11588        394 HIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMC  438 (459)
Q Consensus       394 H~~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~~C  438 (459)
                      |++ .|++++||.|++|++.|.+.+.|..|+++|++++||.|++|
T Consensus         3 H~~-~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytq_A            3 SGS-SGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGPSSG   46 (46)
T ss_dssp             CSS-CSSCCCSCBCSSSCCBCSCHHHHHHHHTTTCCSCSSCCCCC
T ss_pred             CCc-CcCCCCCcCCCccChhhCChHHHHHHHHHhCCCCCCCCCCC
Confidence            445 78889999999999999999999999999999999999987

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=8.7e-12  Score=78.79  Aligned_cols=44  Identities=18%  Similarity=0.317  Sum_probs=40.4

Q ss_pred             HHHhhcCCCCccccccchhccCChHHHHHHHHHhCCCCCcccCcc
Q psy11588        394 HIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMC  438 (459)
Q Consensus       394 H~~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~~C  438 (459)
                      |++ .|++++||.|++|++.|...+.|..|+++|++++||.|++|
T Consensus         3 h~~-~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2elz_A            3 SGS-SGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGPSSG   46 (46)
T ss_dssp             CCS-CCCCCSSCBCSSSCCBCSSHHHHHHHGGGGGSCCCCCSCCC
T ss_pred             CCC-CCCCCCCeeCcccCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            445 78899999999999999999999999999999999999987

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.14  E-value=7.3e-12  Score=79.14  Aligned_cols=44  Identities=23%  Similarity=0.455  Sum_probs=40.6

Q ss_pred             HHHhhcCCCCccccccchhccCChHHHHHHHHHhCCCCCcccCcc
Q psy11588        394 HIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMC  438 (459)
Q Consensus       394 H~~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~~C  438 (459)
                      |++ .|++++||.|++|++.|.+.+.|..|+++|++++||.|++|
T Consensus         3 H~~-~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em5_A            3 SGS-SGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCC-CCCCSCSEECSSSCCEESSHHHHHHHHTTTSCSCCSSCCCC
T ss_pred             CcC-CCCCCCCeECCcCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            555 78889999999999999999999999999999999999988

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=7.3e-12  Score=79.15  Aligned_cols=44  Identities=27%  Similarity=0.349  Sum_probs=40.5

Q ss_pred             HHHhhcCCCCccccccchhccCChHHHHHHHHHhCCCCCcccCcc
Q psy11588        394 HIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMC  438 (459)
Q Consensus       394 H~~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~~C  438 (459)
                      |++ .|++++||.|++|++.|.....|..|+++|++++||.|++|
T Consensus         3 H~~-~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emf_A            3 SGS-SGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCS-SSSSSCCEECSSSCCEESCHHHHHHHGGGTSCSSCSCCCCC
T ss_pred             ccc-ccCCCCCeECCCCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            555 78889999999999999999999999999999999999987

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=99.14  E-value=8.5e-12  Score=78.85  Aligned_cols=44  Identities=25%  Similarity=0.412  Sum_probs=40.6

Q ss_pred             HHHhhcCCCCccccccchhccCChHHHHHHHHHhCCCCCcccCcc
Q psy11588        394 HIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMC  438 (459)
Q Consensus       394 H~~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~~C  438 (459)
                      |++ .|++++||.|++|++.|...+.|..|+++|++++||.|++|
T Consensus         3 H~~-~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ema_A            3 SGS-SGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             SCS-SCTTSCCEECSSSCCEESSHHHHHHHHTGGGCCCCCSSSCC
T ss_pred             Ccc-CCCCCcCcCCCCCcchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            555 78889999999999999999999999999999999999987

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=9.1e-12  Score=78.70  Aligned_cols=44  Identities=25%  Similarity=0.395  Sum_probs=40.3

Q ss_pred             HHHhhcCCCCccccccchhccCChHHHHHHHHHhCCCCCcccCcc
Q psy11588        394 HIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMC  438 (459)
Q Consensus       394 H~~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~~C  438 (459)
                      |++ .|++++||.|++|++.|...+.|..|+++|++++||.|++|
T Consensus         3 H~~-~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytr_A            3 SGS-SGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             SSC-CCSSCCTTCCTTTCCCCSSHHHHHHHHTTTTTCSCCCSCCC
T ss_pred             CCc-CCCCCcCcCCCCCCCccCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            555 78889999999999999999999999999999999999987

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=9.8e-12  Score=78.53  Aligned_cols=44  Identities=25%  Similarity=0.279  Sum_probs=40.4

Q ss_pred             HHHhhcCCCCccccccchhccCChHHHHHHHHHhCCCCCcccCcc
Q psy11588        394 HIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMC  438 (459)
Q Consensus       394 H~~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~~C  438 (459)
                      |++ .|++++||.|++|++.|.+.+.|..|+++|++++||.|++|
T Consensus         3 h~~-~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytm_A            3 SGS-SGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPSSG   46 (46)
T ss_dssp             SCC-CCSSCCSSSBTTTTBCCSSHHHHHHHHHHHHSCCCCCCCCC
T ss_pred             CCc-CCCCCCCcCCCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            444 78889999999999999999999999999999999999987

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=9.8e-12  Score=78.55  Aligned_cols=44  Identities=25%  Similarity=0.271  Sum_probs=40.7

Q ss_pred             HHHhhcCCCCccccccchhccCChHHHHHHHHHhCCCCCcccCcc
Q psy11588        394 HIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMC  438 (459)
Q Consensus       394 H~~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~~C  438 (459)
                      |++ .|++++||.|++||+.|...+.|..|+++|++++||.|++|
T Consensus         3 H~~-~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epw_A            3 SGS-SGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGPSSG   46 (46)
T ss_dssp             CCC-CCCCCCSEECSSSCCEESSSHHHHHHHHHCCSCCCSCCCCC
T ss_pred             Ccc-cCCCCCCeeCCCCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            555 78899999999999999999999999999999999999987

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=8e-12  Score=78.97  Aligned_cols=44  Identities=25%  Similarity=0.366  Sum_probs=40.4

Q ss_pred             HHHhhcCCCCccccccchhccCChHHHHHHHHHhCCCCCcccCcc
Q psy11588        394 HIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMC  438 (459)
Q Consensus       394 H~~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~~C  438 (459)
                      |++ .|++++||.|++|++.|...+.|..|+++|++++||.|++|
T Consensus         3 H~~-~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2eq0_A            3 SGS-SGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCC-CTTCCCCEECTTTCCEESSHHHHHHHHTTTCCCCCSCCSCC
T ss_pred             CCc-CCCCCCCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            455 68889999999999999999999999999999999999987

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=8e-12  Score=78.97  Aligned_cols=44  Identities=30%  Similarity=0.446  Sum_probs=40.6

Q ss_pred             HHHhhcCCCCccccccchhccCChHHHHHHHHHhCCCCCcccCcc
Q psy11588        394 HIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMC  438 (459)
Q Consensus       394 H~~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~~C  438 (459)
                      |++ .|++++||.|++|++.|.+.+.|..|+++|++++||.|++|
T Consensus         3 H~~-~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emh_A            3 SGS-SGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCC-SCSCCCSEECTTTCCEESSHHHHHHHHHHHHCSSCSSSCCC
T ss_pred             CCC-CCCCCCCcCCCCCCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            555 78899999999999999999999999999999999999987

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=1e-11  Score=78.46  Aligned_cols=44  Identities=25%  Similarity=0.392  Sum_probs=41.2

Q ss_pred             HHHhhcCCCCccccccchhccCChHHHHHHHHHhCCCCCcccCcc
Q psy11588        394 HIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMC  438 (459)
Q Consensus       394 H~~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~~C  438 (459)
                      |++ .|++++||.|++|++.|...+.|..|+++|++++||.|++|
T Consensus         3 H~~-~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2en1_A            3 SGS-SGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             STT-CCCCCCSEEETTTTEEESSHHHHHHHGGGGSCCCCSCCCCC
T ss_pred             ccc-CCCCCCCeeCCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            566 78999999999999999999999999999999999999987

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.14  E-value=1.1e-11  Score=78.24  Aligned_cols=44  Identities=18%  Similarity=0.267  Sum_probs=40.5

Q ss_pred             HHHhhcCCCCccccccchhccCChHHHHHHHHHhCCCCCcccCcc
Q psy11588        394 HIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMC  438 (459)
Q Consensus       394 H~~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~~C  438 (459)
                      |++ .|++++||.|++|++.|...+.|..|+++|++++||.|++|
T Consensus         3 h~~-~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2enc_A            3 SGS-SGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPSSG   46 (46)
T ss_dssp             CSS-CCCCCCSEECSSSCCEESSHHHHHHHHHHSCCSSCCSSCCC
T ss_pred             CCC-CCCCCCCcCCCCCCCcCCChHHHHHHHHHhCCCCCCCCCCC
Confidence            444 78899999999999999999999999999999999999987

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=1e-11  Score=78.44  Aligned_cols=44  Identities=25%  Similarity=0.331  Sum_probs=40.8

Q ss_pred             HHHhhcCCCCccccccchhccCChHHHHHHHHHhCCCCCcccCcc
Q psy11588        394 HIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMC  438 (459)
Q Consensus       394 H~~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~~C  438 (459)
                      |++ .|+++++|.|++|++.|...+.|..|+++|++++||.|++|
T Consensus         3 h~~-~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en6_A            3 SGS-SGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGPSSG   46 (46)
T ss_dssp             CSC-CCCSSCCEEETTTTEEESSHHHHHHHHHHHSSCCCSSSCCC
T ss_pred             CCC-ccCCCcCeECCCCCcccCchHHHHHHHHHcCCCCCCCCCCC
Confidence            445 78899999999999999999999999999999999999988

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.14  E-value=1.2e-11  Score=78.22  Aligned_cols=44  Identities=18%  Similarity=0.197  Sum_probs=40.5

Q ss_pred             HHHhhcCCCCccccccchhccCChHHHHHHHHHhCCCCCcccCcc
Q psy11588        394 HIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMC  438 (459)
Q Consensus       394 H~~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~~C  438 (459)
                      |++ .|++++||.|++|++.|...+.|..|+++|++++||+|++|
T Consensus         3 H~~-~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2yso_A            3 SGS-SGSREKSHQCRECGEIFFQYVSLIEHQVLHMGQKNSGPSSG   46 (46)
T ss_dssp             CSC-CSSCCCCEECTTTCCEESSHHHHHHHHHHHSCCSCCCTTCC
T ss_pred             ccc-ccCCCCCEEccccChhhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            444 78889999999999999999999999999999999999987

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.14  E-value=8.4e-12  Score=78.87  Aligned_cols=44  Identities=27%  Similarity=0.376  Sum_probs=40.4

Q ss_pred             HHHhhcCCCCccccccchhccCChHHHHHHHHHhCCCCCcccCcc
Q psy11588        394 HIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMC  438 (459)
Q Consensus       394 H~~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~~C  438 (459)
                      |++ .|+++++|.|++|++.|.....|..|+++|++++||.|++|
T Consensus         3 H~~-~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2em7_A            3 SGS-SGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCC-SSSCCCSEECSSSCCEESCHHHHHHHGGGGTTCCCSSTTCC
T ss_pred             CCC-CCCCCcCccCCCccchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            445 78889999999999999999999999999999999999987

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=99.13  E-value=9.7e-12  Score=78.57  Aligned_cols=44  Identities=25%  Similarity=0.345  Sum_probs=40.6

Q ss_pred             HHHhhcCCCCccccccchhccCChHHHHHHHHHhCCCCCcccCcc
Q psy11588        394 HIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMC  438 (459)
Q Consensus       394 H~~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~~C  438 (459)
                      |++ .|++++||.|++|++.|.+.+.|..|+++|++++||.|++|
T Consensus         3 H~~-~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em9_A            3 SGS-SGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPSSG   46 (46)
T ss_dssp             SCC-SCCCCCSEECSSSCCEESSHHHHHHHGGGGTSCCCCSTTCC
T ss_pred             CCC-CCCCCcCeECCccccccCChHHHHHHHHHhCCCCCCCCCCC
Confidence            455 78899999999999999999999999999999999999987

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.13  E-value=9.8e-12  Score=78.55  Aligned_cols=44  Identities=23%  Similarity=0.283  Sum_probs=40.6

Q ss_pred             HHHhhcCCCCccccccchhccCChHHHHHHHHHhCCCCCcccCcc
Q psy11588        394 HIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMC  438 (459)
Q Consensus       394 H~~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~~C  438 (459)
                      |++ .|++++||.|++|++.|...+.|..|+++|++++||+|+.|
T Consensus         3 H~~-~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en8_A            3 SGS-SGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGPSSG   46 (46)
T ss_dssp             CCC-CCCCCSSEECTTTCCEESSHHHHHHHHTTTCCSCSSCCSCC
T ss_pred             ccc-cCCCCCCeECCCcCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            555 78899999999999999999999999999999999999987

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.12  E-value=7.8e-12  Score=79.03  Aligned_cols=44  Identities=27%  Similarity=0.348  Sum_probs=40.8

Q ss_pred             HHHhhcCCCCccccccchhccCChHHHHHHHHHhCCCCCcccCcc
Q psy11588        394 HIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMC  438 (459)
Q Consensus       394 H~~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~~C  438 (459)
                      |++ .|++++||.|++|++.|...+.|..|+++|++++||.|++|
T Consensus         3 H~~-~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2yu8_A            3 SGS-SGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGPSSG   46 (46)
T ss_dssp             CCC-CCCCCSSEECSSSCCEESSSHHHHHHTHHHHSCCCSCSCCC
T ss_pred             cCc-CCCCCCCeECCcCCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            455 78899999999999999999999999999999999999987

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.12  E-value=9.5e-12  Score=78.61  Aligned_cols=44  Identities=30%  Similarity=0.369  Sum_probs=40.7

Q ss_pred             HHHhhcCCCCccccccchhccCChHHHHHHHHHhCCCCCcccCcc
Q psy11588        394 HIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMC  438 (459)
Q Consensus       394 H~~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~~C  438 (459)
                      |++ .|++++||.|++|++.|...+.|..|+++|++++||.|++|
T Consensus         3 H~~-~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ysp_A            3 SGS-SGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGPSSG   46 (46)
T ss_dssp             CCC-CCSSCCSEEETTTTEEESCHHHHHHHHTTSCSCCSSCCSCC
T ss_pred             CCc-CCCCCCCeECCCCCCccCCHHHHHHHHHhhCCCCCCCCCCC
Confidence            455 78899999999999999999999999999999999999988

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=99.12  E-value=1.5e-11  Score=77.72  Aligned_cols=41  Identities=27%  Similarity=0.319  Sum_probs=39.1

Q ss_pred             hcCCCCccccccchhccCChHHHHHHHHHhCCCCCcccCcc
Q psy11588        398 AHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMC  438 (459)
Q Consensus       398 ~H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~~C  438 (459)
                      .|+++++|.|++|++.|.+...|..|+++|++++||.|++|
T Consensus         6 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2el6_A            6 SGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGPSSG   46 (46)
T ss_dssp             SSCCCCSEECSSSSCEESSHHHHHHHHGGGCCSSCCSCCCC
T ss_pred             CCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            78899999999999999999999999999999999999987

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.11  E-value=1.4e-11  Score=77.87  Aligned_cols=44  Identities=23%  Similarity=0.229  Sum_probs=40.4

Q ss_pred             HHHhhcCCCCccccccchhccCChHHHHHHHHHhCCCCCcccCcc
Q psy11588        394 HIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMC  438 (459)
Q Consensus       394 H~~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~~C  438 (459)
                      |++ .|+++++|.|++|++.|.....|..|+++|++++||.|++|
T Consensus         3 h~~-~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em8_A            3 SGS-SGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGPSSG   46 (46)
T ss_dssp             CCC-CCCSCCSEECSSSCCEESSHHHHHHHHHHHHCCCCCCSCCC
T ss_pred             CCC-CCCCCCCeECcccCchhCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            344 78889999999999999999999999999999999999988

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.11  E-value=7.6e-12  Score=79.08  Aligned_cols=44  Identities=25%  Similarity=0.371  Sum_probs=40.7

Q ss_pred             HHHhhcCCCCccccccchhccCChHHHHHHHHHhCCCCCcccCcc
Q psy11588        394 HIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMC  438 (459)
Q Consensus       394 H~~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~~C  438 (459)
                      |++ .|++++||.|++|++.|...+.|..|+++|++++||.|++|
T Consensus         3 H~~-~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytg_A            3 SGS-SGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCC-CCSSCCSEECTTTCCEESSSHHHHTTGGGGSSCCSSCSCCC
T ss_pred             CCC-CCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            555 78889999999999999999999999999999999999988

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.10  E-value=4.9e-11  Score=74.83  Aligned_cols=42  Identities=24%  Similarity=0.323  Sum_probs=40.3

Q ss_pred             hcCCCCccccccchhccCChHHHHHHHHHhCCCCCcccCccc
Q psy11588        398 AHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMCP  439 (459)
Q Consensus       398 ~H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~~C~  439 (459)
                      .|++++||.|++|++.|.....|..|+++|+++++|.|+.||
T Consensus         4 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~cg   45 (45)
T 2epq_A            4 GSSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKSGPSSG   45 (45)
T ss_dssp             CCSSCCSSEETTTTEECSCHHHHHHHHHHHSCCCCCCCCCCC
T ss_pred             CcCCCCCCcCCCCCcccCCHHHHHHHHHHccCCCCCCCcCCC
Confidence            688899999999999999999999999999999999999996

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.10  E-value=3.4e-11  Score=76.77  Aligned_cols=43  Identities=23%  Similarity=0.574  Sum_probs=40.5

Q ss_pred             hcCCCCccccccchhccCChHHHHHHHHHhCCCCCcccCcccc
Q psy11588        398 AHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMCPS  440 (459)
Q Consensus       398 ~H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~~C~~  440 (459)
                      .|.++++|.|++|++.|.+...|..|+++|++++||.|++|++
T Consensus         6 ~~~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C~k   48 (48)
T 2epr_A            6 SGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPSSG   48 (48)
T ss_dssp             CCCCCCSEEETTTTEEESSHHHHHHHGGGSCSCCCCCSCCCCC
T ss_pred             CCCCCcCeeCCCCCcccCCHHHHHHHHHhcCCCCCccCCCCCC
Confidence            4678899999999999999999999999999999999999986

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.09  E-value=1.8e-11  Score=77.35  Aligned_cols=44  Identities=25%  Similarity=0.336  Sum_probs=40.0

Q ss_pred             HHHhhcCCCCccccccchhccCChHHHHHHHHHhCCCCCcccCcc
Q psy11588        394 HIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMC  438 (459)
Q Consensus       394 H~~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~~C  438 (459)
                      |++ .|++++||.|++|++.|...+.|..|+++|++++||.|++|
T Consensus         3 H~~-~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~   46 (46)
T 2ep3_A            3 SGS-SGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCS-SSSCCCSEECSSSCCEESSHHHHHHHHTTTTTSCCCCTTCC
T ss_pred             CCC-CCCCCCCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            555 78889999999999999999999999999999999999875

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.09  E-value=2.2e-11  Score=77.29  Aligned_cols=44  Identities=25%  Similarity=0.285  Sum_probs=40.5

Q ss_pred             HHHhhcCCCCccccccchhccCChHHHHHHHH-HhCCCCCcccCcc
Q psy11588        394 HIRYAHTIRQKSICDVCGKEFKMKKRLKEHMA-VHTTDRPFVCDMC  438 (459)
Q Consensus       394 H~~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~-~H~~~~~~~C~~C  438 (459)
                      |++ .|++++||.|++|++.|...+.|..|++ +|++++||.|++|
T Consensus         3 H~~-~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~~~k~~~C~~C   47 (47)
T 2epx_A            3 SGS-SGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGPSSG   47 (47)
T ss_dssp             CCC-CCCCCCSBCCSSSCCCBSSHHHHHHHHTTTTTTSCSSSCCCC
T ss_pred             ccc-ccCCCCCEECCccCchhCChHHHHHHhHhhcCCCCCCCCCCC
Confidence            455 7889999999999999999999999999 9999999999987

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.08  E-value=2.8e-11  Score=76.41  Aligned_cols=44  Identities=23%  Similarity=0.388  Sum_probs=40.2

Q ss_pred             HHHhhcCCCCccccccchhccCChHHHHHHHHHhCCCCCcccCcc
Q psy11588        394 HIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMC  438 (459)
Q Consensus       394 H~~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~~C  438 (459)
                      |++ .|+++++|.|++|++.|.....|..|+++|++++||.|++|
T Consensus         3 H~~-~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~~   46 (46)
T 2em2_A            3 SGS-SGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCC-SCCCCCSEECSSSCCEESSHHHHHHHHHHHCCCCSSCSSCC
T ss_pred             CCC-CCCCCCCEECCcCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            455 78899999999999999999999999999999999999875

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.03  E-value=7.1e-11  Score=72.84  Aligned_cols=39  Identities=21%  Similarity=0.334  Sum_probs=36.1

Q ss_pred             hcCCCCccccccchhccCChHHHHHHHHHhCCCCCcccC
Q psy11588        398 AHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCD  436 (459)
Q Consensus       398 ~H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~  436 (459)
                      .|++++||.|++|++.|...+.|..|+++|++++||+|+
T Consensus         4 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   42 (42)
T 2yte_A            4 GSSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSSG   42 (42)
T ss_dssp             SSCSCCSCBCTTTCCBCSSHHHHHHHHHHTSCCSSCCCC
T ss_pred             CcCCCCCeECCCCCCccCCHHHHHHHHHHhCCCCCCCCC
Confidence            688899999999999999999999999999999999985

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=99.03  E-value=5e-11  Score=73.57  Aligned_cols=39  Identities=23%  Similarity=0.379  Sum_probs=36.2

Q ss_pred             hcCCCCccccccchhccCChHHHHHHHHHhCCCCCcccC
Q psy11588        398 AHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCD  436 (459)
Q Consensus       398 ~H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~  436 (459)
                      .|++++||.|++|++.|.+.+.|..|+++|++++||.|+
T Consensus         4 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   42 (42)
T 2el5_A            4 GSSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSSG   42 (42)
T ss_dssp             SSSSCCSEECSSSCCEESSHHHHHHHHGGGCCCCSCCCC
T ss_pred             CCCCCCCccCCCcChhhCCHHHHHHHHHhcCCCCCCCCC
Confidence            688899999999999999999999999999999999985

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=99.03  E-value=6.1e-11  Score=74.79  Aligned_cols=43  Identities=26%  Similarity=0.404  Sum_probs=39.0

Q ss_pred             HHHhhcCCCCccccccchhccCChHHHHHHHHHhCCCCCcccCc
Q psy11588        394 HIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDM  437 (459)
Q Consensus       394 H~~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~~  437 (459)
                      |++ .|++++||.|++|++.|.....|..|+++|++++||.|++
T Consensus         3 H~~-~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emj_A            3 SGS-SGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCC-CCCCCCSEECSSSSCEESSHHHHHHHHHHHTTSCSSSSCC
T ss_pred             CCC-CCCCCCCEECCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            555 7888999999999999999999999999999999999974

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=99.02  E-value=4.1e-11  Score=78.52  Aligned_cols=50  Identities=18%  Similarity=0.367  Sum_probs=25.9

Q ss_pred             CcCCChHHHHHHHHhhcCCCCccccccchhccCChHHHHHHHHHhCCCCCc
Q psy11588        383 NTYKNPKSLESHIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPF  433 (459)
Q Consensus       383 ~~f~~~~~l~~H~~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~  433 (459)
                      +.|.....|..|++ .|++++||.|++||+.|...+.|..|+++|++++||
T Consensus         4 k~~~~~~~l~~h~~-~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   53 (54)
T 1yui_A            4 KRAKHPPGTEKPRS-RSQSEQPATCPICYAVIRQSRNLRRHLELRHFAKPG   53 (54)
T ss_dssp             CCCSCSSCCCCCHH-HHTSSCCEECTTTCCEESSHHHHHHHHHHHTTTSCC
T ss_pred             cccCCCcchhhHHH-hcCCCCCccCCCCCcccCCHHHHHHHHHHhccCCCC
Confidence            34444445555554 455555555555555555555555555555555544

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.02  E-value=6.4e-11  Score=74.69  Aligned_cols=43  Identities=30%  Similarity=0.329  Sum_probs=39.0

Q ss_pred             HHHhhcCCCCccccccchhccCChHHHHHHHHHhCCCCCcccCc
Q psy11588        394 HIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDM  437 (459)
Q Consensus       394 H~~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~~  437 (459)
                      |++ .|++++||.|++|++.|.....|..|+++|++++||+|++
T Consensus         3 H~~-~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2em4_A            3 SGS-SGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGPSS   45 (46)
T ss_dssp             SCC-CCCCSSSEECSSSCCEESSHHHHHHHHHHHSSSSCCCCCC
T ss_pred             Ccc-ccCCCcCcCCCCCCCccCCHHHHHHHHHhcCCCCCCCCCC
Confidence            455 7888999999999999999999999999999999999974

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.02  E-value=7.7e-11  Score=74.32  Aligned_cols=41  Identities=27%  Similarity=0.405  Sum_probs=39.1

Q ss_pred             hcCCCCccccccchhccCChHHHHHHHHHhCCCCCcccCcc
Q psy11588        398 AHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMC  438 (459)
Q Consensus       398 ~H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~~C  438 (459)
                      .|.++++|.|++|++.|.+...|..|+++|++++||.|++|
T Consensus         6 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytt_A            6 SGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGPSSG   46 (46)
T ss_dssp             SCSCCCTTCCSSSCCCCSSHHHHHHHHTHHHHCCCCSCCCC
T ss_pred             CCCCCCCeeCCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            68889999999999999999999999999999999999987

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.02  E-value=1.1e-10  Score=73.61  Aligned_cols=41  Identities=29%  Similarity=0.443  Sum_probs=39.0

Q ss_pred             hcCCCCccccccchhccCChHHHHHHHHHhCCCCCcccCcc
Q psy11588        398 AHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMC  438 (459)
Q Consensus       398 ~H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~~C  438 (459)
                      .|+++++|.|++|++.|.....|..|+++|++++||.|++|
T Consensus         6 ~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ep0_A            6 SGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             SSTTCCSEECSSSCCEESSHHHHHHHHTTTSSSCCCSCCCC
T ss_pred             CCCCCCCeeCcccCcccCChHHHHHHHHHhCCCCCCCCCCC
Confidence            68889999999999999999999999999999999999987

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.01  E-value=7.4e-11  Score=74.42  Aligned_cols=43  Identities=26%  Similarity=0.407  Sum_probs=39.0

Q ss_pred             HHHhhcCCCCccccccchhccCChHHHHHHHHHhCCCCCcccCc
Q psy11588        394 HIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDM  437 (459)
Q Consensus       394 H~~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~~  437 (459)
                      |++ .|++++||.|++|++.|.....|..|+++|++++||.|++
T Consensus         3 H~~-~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eow_A            3 SGS-SGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGPSS   45 (46)
T ss_dssp             CCC-CSCCCCCEECTTSCCEESSHHHHHHHHHHHCCCSCSCTTC
T ss_pred             ccC-CCCCCCCeeccccCChhcCHHHHHHHHHHcCCCCCCCCCC
Confidence            555 7888999999999999999999999999999999999974

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.01  E-value=7.3e-11  Score=74.44  Aligned_cols=43  Identities=28%  Similarity=0.386  Sum_probs=39.0

Q ss_pred             HHHhhcCCCCccccccchhccCChHHHHHHHHHhCCCCCcccCc
Q psy11588        394 HIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDM  437 (459)
Q Consensus       394 H~~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~~  437 (459)
                      |++ .|++++||.|++|++.|...+.|..|+++|++++||.|++
T Consensus         3 H~~-~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2em3_A            3 SGS-SGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPSS   45 (46)
T ss_dssp             CCC-CCSSCCSEECSSSCCEESSHHHHHHHHHHHCCCCCCCSCC
T ss_pred             CCC-CCCCCcCeECCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            555 7888999999999999999999999999999999999974

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.01  E-value=7e-11  Score=74.52  Aligned_cols=43  Identities=26%  Similarity=0.387  Sum_probs=38.6

Q ss_pred             HHHhhcCCCCccccccchhccCChHHHHHHHHHhCCCCCcccCc
Q psy11588        394 HIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDM  437 (459)
Q Consensus       394 H~~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~~  437 (459)
                      |++ .|++++||.|++|++.|...+.|..|+++|++++||.|++
T Consensus         3 H~~-~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2enf_A            3 SGS-SGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGPSS   45 (46)
T ss_dssp             CCC-CCCCCCSCBCSSSCCBCSSHHHHHHHHTTTTTSSCCCCSC
T ss_pred             CCc-CCCCCcCeECCCCCcccCCHHHHHHHHHhhCCCCCCCCCC
Confidence            455 7888999999999999999999999999999999999974

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=99.01  E-value=6.6e-12  Score=84.94  Aligned_cols=54  Identities=20%  Similarity=0.367  Sum_probs=46.1

Q ss_pred             HHHHHhhcCCCCccccccchhccCChHHHHHHHHHhCCCCCcccCccccccCChHHHH
Q psy11588        392 ESHIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMCPSAFKLKKHLQ  449 (459)
Q Consensus       392 ~~H~~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~~C~~~f~~~~~l~  449 (459)
                      ..|++ .|++++||.|+.||+.|.....|.   ++|++++||.|++|++.|....++.
T Consensus         3 ~~h~~-~H~~~k~~~C~~C~k~F~~~~~l~---~~H~~~k~~~C~~C~k~f~~~~~~~   56 (62)
T 1vd4_A            3 ETDER-DSTNRASFKCPVCSSTFTDLEANQ---LFDPMTGTFRCTFCHTEVEEDESAM   56 (62)
T ss_dssp             CCCSS-SCCSSSEEECSSSCCEEEHHHHHH---HEETTTTEEBCSSSCCBCEECTTCS
T ss_pred             hhHHH-HcCCCCCccCCCCCchhccHHHhH---hhcCCCCCEECCCCCCccccCcccc
Confidence            34666 788999999999999999988886   8899999999999999998776553

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.01  E-value=2e-10  Score=78.73  Aligned_cols=55  Identities=22%  Similarity=0.387  Sum_probs=39.1

Q ss_pred             CCCccccccccccccChHHHHHHHHHcCCCCCcccc-cccccccccchHHHHHhhhCC
Q psy11588        317 KVRDHQCSVCGKAFADITNMKVHMRIHTGEKKYVCE-TCGASFVQWGSLNQHNLVHTA  373 (459)
Q Consensus       317 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~-~C~~~f~~~~~l~~H~~~h~~  373 (459)
                      +.++|.|+.|++.|. ...|..|+++ .+++||.|+ .|++.|...+.|..|+++|.+
T Consensus         7 ~~~~~~C~~C~k~f~-~~~L~~H~~~-~~~~p~~C~~~C~k~f~~~~~L~~H~~~hc~   62 (66)
T 2eod_A            7 GKRTQPCTYCTKEFV-FDTIQSHQYQ-CPRLPVACPNQCGVGTVAREDLPGHLKDSCN   62 (66)
T ss_dssp             CCCEEECSSSCCEEE-HHHHHHHHHH-CSSSEEECTTCCSCCEEETTTHHHHHHTTSS
T ss_pred             CCCCeeccccCCccC-HHHHHHHHHH-cCCcCccCCcccCcccccHHHHHHHHHhhcc
Confidence            456677777777777 7777777776 677777777 777777777777777776654

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.01  E-value=9.7e-11  Score=73.84  Aligned_cols=43  Identities=21%  Similarity=0.308  Sum_probs=38.7

Q ss_pred             HHHhhcCCCCccccccchhccCChHHHHHHHHHhCCCCCcccCc
Q psy11588        394 HIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDM  437 (459)
Q Consensus       394 H~~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~~  437 (459)
                      |++ .|+++++|.|++|++.|.....|..|+++|++++||.|++
T Consensus         3 h~~-~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2en9_A            3 SGS-SGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCS-SCCSSCCCBCTTTCCBCSSHHHHHHHHHHHTSSCCCSCCC
T ss_pred             CCC-CCCCCCCEECCccCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            444 7888999999999999999999999999999999999974

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.00  E-value=8.4e-11  Score=74.14  Aligned_cols=43  Identities=28%  Similarity=0.362  Sum_probs=38.6

Q ss_pred             HHHhhcCCCCccccccchhccCChHHHHHHHHHhCCCCCcccCc
Q psy11588        394 HIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDM  437 (459)
Q Consensus       394 H~~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~~  437 (459)
                      |++ .|+++++|.|++|++.|.....|..|+++|++++||.|++
T Consensus         3 H~~-~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ep1_A            3 SGS-SGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGPSS   45 (46)
T ss_dssp             CCC-CCSSCCSSCCSSSCCCCSSHHHHHHHHGGGSSSCCCSSSC
T ss_pred             ccc-CCCCCCCcCCCCCCchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            555 7888999999999999999999999999999999999974

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.00  E-value=7.9e-11  Score=74.28  Aligned_cols=43  Identities=33%  Similarity=0.409  Sum_probs=38.5

Q ss_pred             HHHhhcCCCCccccccchhccCChHHHHHHHHHhCCCCCcccCc
Q psy11588        394 HIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDM  437 (459)
Q Consensus       394 H~~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~~  437 (459)
                      |++ .|+++++|.|++|++.|.....|..|+++|++++||.|++
T Consensus         3 H~~-~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2emg_A            3 SGS-SGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGPSS   45 (46)
T ss_dssp             CCC-CCCSCCSCBCTTTCCBCSSHHHHHHHHTTTSCCCCSCSCC
T ss_pred             CCC-CCCCCCCEECCccCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            455 7888999999999999999999999999999999999974

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.00  E-value=6.9e-11  Score=74.55  Aligned_cols=43  Identities=28%  Similarity=0.372  Sum_probs=38.8

Q ss_pred             HHHhhcCCCCccccccchhccCChHHHHHHHHHhCCCCCcccCc
Q psy11588        394 HIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDM  437 (459)
Q Consensus       394 H~~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~~  437 (459)
                      |++ .|++++||+|++|++.|...+.|..|+++|++++||.|++
T Consensus         3 H~~-~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ytp_A            3 SGS-SGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCC-SSCCCCCEECSSSCCEESSHHHHHHHHTTTSCCCCCSSCC
T ss_pred             ccc-CcCCCCCeECCcCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            455 7888999999999999999999999999999999999974

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.00  E-value=7.4e-11  Score=74.42  Aligned_cols=43  Identities=28%  Similarity=0.413  Sum_probs=38.4

Q ss_pred             HHHhhcCCCCccccccchhccCChHHHHHHHHHhCCCCCcccCc
Q psy11588        394 HIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDM  437 (459)
Q Consensus       394 H~~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~~  437 (459)
                      |++ .|++++||.|++|++.|.....|..|+++|++++||.|++
T Consensus         3 H~~-~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eq2_A            3 SGS-SGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             CCC-SSSSSCSSSCCSSCCCCSSHHHHHHHGGGGCCCCCCCCCC
T ss_pred             ccc-ccCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            555 7888999999999999999999999999999999999974

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.00  E-value=8.6e-11  Score=74.08  Aligned_cols=43  Identities=28%  Similarity=0.419  Sum_probs=39.1

Q ss_pred             HHHhhcCCCCccccccchhccCChHHHHHHHHHhCCCCCcccCc
Q psy11588        394 HIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDM  437 (459)
Q Consensus       394 H~~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~~  437 (459)
                      |++ .|++++||.|++|++.|...+.|..|+++|++++||.|+.
T Consensus         3 H~~-~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2eoz_A            3 SGS-SGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPSS   45 (46)
T ss_dssp             SCC-CCSSCCSEEETTTTEEESSHHHHHHHHHHHSSCCSSSCCC
T ss_pred             ccc-cCCCCCCeECcccChhhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            555 7888999999999999999999999999999999999974

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.00  E-value=7.6e-11  Score=74.35  Aligned_cols=43  Identities=26%  Similarity=0.397  Sum_probs=38.4

Q ss_pred             HHHhhcCCCCccccccchhccCChHHHHHHHHHhCCCCCcccCc
Q psy11588        394 HIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDM  437 (459)
Q Consensus       394 H~~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~~  437 (459)
                      |++ .|++++||.|++|++.|.....|..|+++|++++||.|++
T Consensus         3 H~~-~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yti_A            3 SGS-SGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPSS   45 (46)
T ss_dssp             CCC-CCSCCCTTCCSSSCCCCSSHHHHHHHHTTTSCSCCSSTTC
T ss_pred             CCc-CCCCCcCeECCCCCcccCChhHHHHHhHhcCCCCCCCCCC
Confidence            445 6888999999999999999999999999999999999974

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.00  E-value=8.4e-11  Score=74.13  Aligned_cols=43  Identities=26%  Similarity=0.411  Sum_probs=38.7

Q ss_pred             HHHhhcCCCCccccccchhccCChHHHHHHHHHhCCCCCcccCc
Q psy11588        394 HIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDM  437 (459)
Q Consensus       394 H~~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~~  437 (459)
                      |++ .|++++||.|++|++.|...+.|..|+++|++++||.|++
T Consensus         3 H~~-~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yth_A            3 SGS-SGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             CCS-CCCCSSSBCCSSSCCCBSSHHHHHHHGGGGTTCCCSSCCC
T ss_pred             ccc-CCCCCcCCCCCCCCcccCCHHHHHHHHHhcCCCCCCCCCC
Confidence            555 7888999999999999999999999999999999999974

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.99  E-value=7.7e-11  Score=74.34  Aligned_cols=43  Identities=28%  Similarity=0.432  Sum_probs=38.8

Q ss_pred             HHHhhcCCCCccccccchhccCChHHHHHHHHHhCCCCCcccCc
Q psy11588        394 HIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDM  437 (459)
Q Consensus       394 H~~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~~  437 (459)
                      |++ .|++++||.|++|++.|...+.|..|+++|++++||.|++
T Consensus         3 H~~-~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~~C~~   45 (46)
T 2eor_A            3 SGS-SGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             SSS-SSSCCCSEECTTTCCEESSHHHHHHHHHHHHSCCCSSSTT
T ss_pred             CCc-CcCCCcCccCCCCCCCcCCHHHHHHHHHhcCCCCCCCCCC
Confidence            555 7888999999999999999999999999999999999974

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=98.99  E-value=6e-11  Score=77.73  Aligned_cols=49  Identities=14%  Similarity=0.343  Sum_probs=44.3

Q ss_pred             hhccCChHHHHHHHHHhCCCCCcccCccccccCChHHHHHHHHHhcCCC
Q psy11588        411 GKEFKMKKRLKEHMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVHLKKD  459 (459)
Q Consensus       411 ~~~f~~~~~l~~H~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~  459 (459)
                      ++.|.....|..|+++|++++||.|++|++.|.+.+.|..|+++|++++
T Consensus         3 ~k~~~~~~~l~~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k   51 (54)
T 1yui_A            3 AKRAKHPPGTEKPRSRSQSEQPATCPICYAVIRQSRNLRRHLELRHFAK   51 (54)
T ss_dssp             CCCCSCSSCCCCCHHHHTSSCCEECTTTCCEESSHHHHHHHHHHHTTTS
T ss_pred             ccccCCCcchhhHHHhcCCCCCccCCCCCcccCCHHHHHHHHHHhccCC
Confidence            4678888999999999999999999999999999999999999998864

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.99  E-value=9e-11  Score=74.01  Aligned_cols=43  Identities=26%  Similarity=0.360  Sum_probs=38.6

Q ss_pred             HHHhhcCCCCccccccchhccCChHHHHHHHHHhCCCCCcccCc
Q psy11588        394 HIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDM  437 (459)
Q Consensus       394 H~~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~~  437 (459)
                      |++ .|+++++|.|++|++.|.....|..|+++|++++||.|+.
T Consensus         3 H~~-~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emi_A            3 SGS-SGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGPSS   45 (46)
T ss_dssp             CCC-SCSSCCCEECSSSCCEESSHHHHHHHHGGGCSCCCCSCCC
T ss_pred             CCc-ccCCCCCCCCCCCCcccCCHHHHHHHHhHhCCCCCCCCCC
Confidence            455 7888999999999999999999999999999999999974

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.99  E-value=8.7e-11  Score=74.09  Aligned_cols=43  Identities=26%  Similarity=0.295  Sum_probs=38.6

Q ss_pred             HHHhhcCCCCccccccchhccCChHHHHHHHHHhCCCCCcccCc
Q psy11588        394 HIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDM  437 (459)
Q Consensus       394 H~~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~~  437 (459)
                      |++ .|++++||.|++|++.|.+...|..|+++|++++||.|++
T Consensus         3 H~~-~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ytf_A            3 SGS-SGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGPSS   45 (46)
T ss_dssp             CCC-SSCCCCSEECSSSCCEESSHHHHHHHHHTSCSSSSSCCCC
T ss_pred             CCC-CCCCCCCcCCCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            455 6888999999999999999999999999999999999974

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.99  E-value=1.1e-10  Score=72.82  Aligned_cols=42  Identities=24%  Similarity=0.276  Sum_probs=37.7

Q ss_pred             HHHhhcCCCCccccccchhccCChHHHHHHHHHhCCCCCcccC
Q psy11588        394 HIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCD  436 (459)
Q Consensus       394 H~~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~  436 (459)
                      |++ .|++++||.|++|++.|...+.|..|+++|++++||.|+
T Consensus         3 H~~-~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eof_A            3 SGS-SGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSSG   44 (44)
T ss_dssp             CSS-CCSCCCSEECTTTCCEESCHHHHHHHHHHTTTSSCSCCC
T ss_pred             Ccc-CCCCCCCeECCCCCcccCCHhHHHHHHHHhCCCCCCCCC
Confidence            555 788899999999999999999999999999999999985

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.99  E-value=1.2e-10  Score=73.46  Aligned_cols=42  Identities=24%  Similarity=0.289  Sum_probs=38.0

Q ss_pred             HHHhhcCCCCccccccchhccCChHHHHHHHHHhCCCCCcccC
Q psy11588        394 HIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCD  436 (459)
Q Consensus       394 H~~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~  436 (459)
                      |++ .|++++||.|++|++.|.....|..|+++|++++||+|+
T Consensus         3 H~~-~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eoh_A            3 SGS-SGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGPS   44 (46)
T ss_dssp             CCC-SCCCSCSCCCSSSCCCCSSHHHHHHHHHHCSSCCSCSTT
T ss_pred             CCC-CcCCCCCcCCCCcCchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            445 788899999999999999999999999999999999996

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.99  E-value=1e-10  Score=73.75  Aligned_cols=43  Identities=33%  Similarity=0.464  Sum_probs=38.6

Q ss_pred             HHHhhcCCCCccccccchhccCChHHHHHHHHHhCCCCCcccCc
Q psy11588        394 HIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDM  437 (459)
Q Consensus       394 H~~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~~  437 (459)
                      |++ .|++++||.|++|++.|.....|..|+++|++++||.|+.
T Consensus         3 H~~-~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2em6_A            3 SGS-SGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             CCS-CCCCCCCCBCSSSCCBCSSHHHHHHHHTTTSSSCCCCTTC
T ss_pred             Ccc-ccCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            455 6888999999999999999999999999999999999974

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=8.5e-11  Score=74.10  Aligned_cols=43  Identities=30%  Similarity=0.495  Sum_probs=38.4

Q ss_pred             HHHhhcCCCCccccccchhccCChHHHHHHHHHhCCCCCcccCc
Q psy11588        394 HIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDM  437 (459)
Q Consensus       394 H~~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~~  437 (459)
                      |++ .|++++||.|++|++.|.....|..|+++|++++||.|++
T Consensus         3 h~~-~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eon_A            3 SGS-SGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGPSS   45 (46)
T ss_dssp             CSS-SCSSCCSCBCSSSCCBCSSHHHHHHHTTTTTSCCSCTTSC
T ss_pred             CCC-CCCCCcccCCCCCCcccCcHHHHHHHHHhcCCCCCCCCCC
Confidence            344 7888999999999999999999999999999999999974

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=9.9e-11  Score=73.81  Aligned_cols=43  Identities=26%  Similarity=0.433  Sum_probs=38.5

Q ss_pred             HHHhhcCCCCccccccchhccCChHHHHHHHHHhCCCCCcccCc
Q psy11588        394 HIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDM  437 (459)
Q Consensus       394 H~~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~~  437 (459)
                      |++ .|++++||.|++|++.|.....|..|+++|++++||.|+.
T Consensus         3 H~~-~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eq1_A            3 SGS-SGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGPSS   45 (46)
T ss_dssp             CCC-CCCCSCCCCCTTTTCCCSSHHHHHHHHTTTCCSCCSSCCC
T ss_pred             ccc-ccCCCCCeECCcCChhhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            555 7888999999999999999999999999999999999974

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=8.7e-11  Score=74.09  Aligned_cols=43  Identities=30%  Similarity=0.463  Sum_probs=38.8

Q ss_pred             HHHhhcCCCCccccccchhccCChHHHHHHHHHhCCCCCcccCc
Q psy11588        394 HIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDM  437 (459)
Q Consensus       394 H~~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~~  437 (459)
                      |++ .|++++||.|++|++.|...+.|..|+++|++++||.|++
T Consensus         3 H~~-~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~p~~C~~   45 (46)
T 2yts_A            3 SGS-SGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGPSS   45 (46)
T ss_dssp             CSC-CCCSCCSEECSSSCCEESSHHHHHHHGGGTSSCCSSCCCC
T ss_pred             CCC-CCCCCcCEECCCCChhhCChHHHHHHHHhcCCCCCcCCCC
Confidence            555 7888999999999999999999999999999999999974

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=9e-11  Score=73.22  Aligned_cols=42  Identities=24%  Similarity=0.264  Sum_probs=37.8

Q ss_pred             HHHhhcCCCCccccccchhccCChHHHHHHHHHhCCCCCcccC
Q psy11588        394 HIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCD  436 (459)
Q Consensus       394 H~~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~  436 (459)
                      |++ .|++++||.|++|++.|...+.|..|+++|++++||+|+
T Consensus         3 H~~-~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eoj_A            3 SGS-SGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSSG   44 (44)
T ss_dssp             SCC-SSSSCCSCEETTTTEECSSHHHHHHHHTTSSSSCSCCCC
T ss_pred             Ccc-ccCCCcCeeCCCCCCccCCHHHHHHHHHHcCCCCCCCCC
Confidence            555 788899999999999999999999999999999999985

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.97  E-value=1.2e-10  Score=72.60  Aligned_cols=42  Identities=14%  Similarity=0.199  Sum_probs=37.7

Q ss_pred             HHHhhcCCCCccccccchhccCChHHHHHHHHHhCCCCCcccC
Q psy11588        394 HIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCD  436 (459)
Q Consensus       394 H~~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~  436 (459)
                      |++ .|++++||.|++|++.|.....|..|+++|++++||.|+
T Consensus         3 H~~-~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2yu5_A            3 SGS-SGAGENPFKCSKCDRVFTQRNYLVQHERTHARKSGPSSG   44 (44)
T ss_dssp             CSC-CCSCCCSEECSSSSCEESSSHHHHHHHHHCCCCCSSCCC
T ss_pred             Ccc-ccCCCCCeECCCCCchhCCHHHHHHHhHhcCCCCCCCCC
Confidence            555 688899999999999999999999999999999999985

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.97  E-value=1.1e-10  Score=72.85  Aligned_cols=42  Identities=26%  Similarity=0.349  Sum_probs=37.4

Q ss_pred             HHHhhcCCCCccccccchhccCChHHHHHHHHHhCCCCCcccC
Q psy11588        394 HIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCD  436 (459)
Q Consensus       394 H~~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~  436 (459)
                      |++ .|++++||.|++|++.|.....|..|+++|++++||.|+
T Consensus         3 H~~-~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2en7_A            3 SGS-SGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSSG   44 (44)
T ss_dssp             SCC-CSSSSSSSCCTTTCCCCSSHHHHHHHHTTTCCSSSSCCC
T ss_pred             CCc-CCCCCcCeECCCCCCccCCHHHHHHHhhhcCCCCCCCCC
Confidence            555 688889999999999999999999999999999999985

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.97  E-value=1.2e-10  Score=73.34  Aligned_cols=42  Identities=29%  Similarity=0.310  Sum_probs=38.3

Q ss_pred             HHHhhcCCCCccccccchhccCChHHHHHHHHHhCCCCCcccC
Q psy11588        394 HIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCD  436 (459)
Q Consensus       394 H~~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~  436 (459)
                      |++ .|++++||.|++|++.|.....|..|+++|++++||.|+
T Consensus         3 H~~-~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yto_A            3 SGS-SGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGPS   44 (46)
T ss_dssp             CCC-CCCSCCCEECSSSCCEESSHHHHHHHHHHHTCCCBTTTB
T ss_pred             ccc-ccCCCCCEECcccCCccCCHhHHHHHHHHcCCCCCCCCC
Confidence            555 688899999999999999999999999999999999996

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.97  E-value=1e-10  Score=73.70  Aligned_cols=43  Identities=28%  Similarity=0.413  Sum_probs=38.7

Q ss_pred             HHHhhcCCCCccccccchhccCChHHHHHHHHHhCCCCCcccCc
Q psy11588        394 HIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDM  437 (459)
Q Consensus       394 H~~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~~  437 (459)
                      |++ .|++++||.|++|++.|.....|..|+++|++++||.|++
T Consensus         3 H~~-~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yrj_A            3 SGS-SGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCC-CCCCCCCEECSSSCCEESSHHHHHHHHTTTSSCCSSCSCC
T ss_pred             Ccc-CCCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            455 7888999999999999999999999999999999999974

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=98.95  E-value=1.6e-10  Score=71.23  Aligned_cols=38  Identities=21%  Similarity=0.367  Sum_probs=34.9

Q ss_pred             hcCCCCccccccchhccCChHHHHHHHHHhCCCCCccc
Q psy11588        398 AHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVC  435 (459)
Q Consensus       398 ~H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C  435 (459)
                      .|++++||.|++|++.|...+.|..|+++|++++||.|
T Consensus         5 ~H~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~k~~~C   42 (42)
T 2epc_A            5 SSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPSSG   42 (42)
T ss_dssp             CCCSSCCEECSSSCCEESSHHHHHHHHHHTTCCCCCCC
T ss_pred             cCCCCCCeECCCCCcccCCHHHHHHHhhhcCCCCCCCC
Confidence            68888999999999999999999999999999999987

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.95  E-value=1.4e-10  Score=72.36  Aligned_cols=42  Identities=19%  Similarity=0.359  Sum_probs=37.6

Q ss_pred             HHHhhcCCCCccccccchhccCChHHHHHHHHHhCCCCCcccC
Q psy11588        394 HIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCD  436 (459)
Q Consensus       394 H~~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~  436 (459)
                      |++ .|++++||.|++|++.|...+.|..|+++|++++||.|+
T Consensus         3 H~~-~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2emb_A            3 SGS-SGHTRKRYECSKCQATFNLRKHLIQHQKTHAAKSGPSSG   44 (44)
T ss_dssp             CCS-CCCCCSSEECTTTCCEESCHHHHHHHGGGGCCCCCTTCC
T ss_pred             ccc-ccCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCCcCCC
Confidence            455 788899999999999999999999999999999999985

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.94  E-value=5.3e-10  Score=69.18  Aligned_cols=40  Identities=18%  Similarity=0.253  Sum_probs=37.3

Q ss_pred             hcCCCCccccccchhccCChHHHHHHHHHhCCCCCcccCc
Q psy11588        398 AHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDM  437 (459)
Q Consensus       398 ~H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~~  437 (459)
                      .|++++||.|+.|++.|...+.|..|+++|++++||.|++
T Consensus         4 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   43 (43)
T 2yrm_A            4 GSSGNGAFFCNECDCRFSEEASLKRHTLQTHSDKSGPSSG   43 (43)
T ss_dssp             CCSSSCCBCCSSSCCCBSSHHHHHHHHHHHTCTTCSSSCC
T ss_pred             CcCCCCCEECCCCCCeeCChHHHHHHHHhhCCCCCccCCC
Confidence            5788999999999999999999999999999999999974

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.94  E-value=1.3e-10  Score=71.70  Aligned_cols=38  Identities=26%  Similarity=0.553  Sum_probs=34.6

Q ss_pred             hcCCCCccccccchhccCChHHHHHHHHHhCCCCCccc
Q psy11588        398 AHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVC  435 (459)
Q Consensus       398 ~H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C  435 (459)
                      .|++++||.|++|++.|...+.|..|+++|++++||+|
T Consensus         5 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2eos_A            5 SSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPSSG   42 (42)
T ss_dssp             CCSSSCCBCCSSSCCCBSSHHHHHHHTTTTSCCSSTTC
T ss_pred             ccCCCCCEECCCCCCccCCHHHHHHHHHhcCCCCCCCC
Confidence            68888999999999999999999999999999999987

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.94  E-value=2.1e-10  Score=71.46  Aligned_cols=39  Identities=28%  Similarity=0.461  Sum_probs=36.0

Q ss_pred             hcCCCCccccccchhccCChHHHHHHHHHhCCCCCcccC
Q psy11588        398 AHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCD  436 (459)
Q Consensus       398 ~H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~  436 (459)
                      .|.++++|.|++|++.|.....|..|+++|++++||+|+
T Consensus         6 ~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (44)
T 2eou_A            6 SGAAKTTSECQECGKIFRHSSLLIEHQALHAGESGPSSG   44 (44)
T ss_dssp             SCSSSCCCCCTTTCCCCSSHHHHHHHHHHHTTSCCCCCC
T ss_pred             CCCCCcCeECCCCCcccCCHHHHHHHHHHHCCCCCCCCC
Confidence            688889999999999999999999999999999999985

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.94  E-value=1.6e-10  Score=72.88  Aligned_cols=43  Identities=28%  Similarity=0.442  Sum_probs=38.8

Q ss_pred             HHHhhcCCCCccccccchhccCChHHHHHHHHHhCCCCCcccCc
Q psy11588        394 HIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDM  437 (459)
Q Consensus       394 H~~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~~  437 (459)
                      |++ .|++++||.|++|++.|...+.|..|+++|++++||.|+.
T Consensus         3 H~~-~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eq3_A            3 SGS-SGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPSS   45 (46)
T ss_dssp             CCC-SSCCCCSSEETTTTEECSSHHHHHHHHTTSCCCCCCCSCC
T ss_pred             ccc-CCCCCCCeECCCCChhhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            555 7888999999999999999999999999999999999963

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.94  E-value=1.7e-10  Score=72.72  Aligned_cols=40  Identities=30%  Similarity=0.471  Sum_probs=37.0

Q ss_pred             hcCCCCccccccchhccCChHHHHHHHHHhCCCCCcccCc
Q psy11588        398 AHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDM  437 (459)
Q Consensus       398 ~H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~~  437 (459)
                      .|++++||.|++|++.|.....|..|+++|++++||.|+.
T Consensus         6 ~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2enh_A            6 SGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGPSS   45 (46)
T ss_dssp             CCCCSSSCBCTTTCCBCSSSHHHHHHGGGSCCSCCCCCCC
T ss_pred             CcCCCCCcCCCCcCchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            6888999999999999999999999999999999999963

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.94  E-value=1.1e-10  Score=71.99  Aligned_cols=41  Identities=32%  Similarity=0.434  Sum_probs=36.1

Q ss_pred             HHHhhcCCCCccccccchhccCChHHHHHHHHHhCCCCCccc
Q psy11588        394 HIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVC  435 (459)
Q Consensus       394 H~~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C  435 (459)
                      |++ .|++++||.|++|++.|...+.|..|+++|++++||.|
T Consensus         2 H~~-~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2ytb_A            2 SSG-SSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPSSG   42 (42)
T ss_dssp             CCC-CCCSCCSBCCTTTTCCBSSHHHHHTTGGGTSCCSCCCC
T ss_pred             Ccc-ccCCCCCeeCCCccchhCCHHHHHHHHHHhCCCCCCCC
Confidence            445 68888999999999999999999999999999999987

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.93  E-value=1.5e-10  Score=72.91  Aligned_cols=43  Identities=21%  Similarity=0.244  Sum_probs=38.2

Q ss_pred             HHHhhcCCCCccccccchhccCChHHHHHHHHHhCC-CCCcccCc
Q psy11588        394 HIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTT-DRPFVCDM  437 (459)
Q Consensus       394 H~~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~-~~~~~C~~  437 (459)
                      |++ .|++++||.|++|++.|...+.|..|+++|++ ++||.|++
T Consensus         3 H~~-~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~C~~   46 (46)
T 2eoy_A            3 SGS-SGQKEKCFKCNKCEKTFSCSKYLTQHERIHTRGVKSGPSSG   46 (46)
T ss_dssp             CCC-CCCCSCCEECSSSCCEESSSHHHHHHHTTCCSCCTTSSSCC
T ss_pred             Ccc-ccCCCCCEECcCCCCcCCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            445 68889999999999999999999999999999 99999974

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.93  E-value=1.5e-10  Score=72.99  Aligned_cols=42  Identities=19%  Similarity=0.361  Sum_probs=37.9

Q ss_pred             HHHhhcCCCCccccccchhccCChHHHHHHHHHhCCCCCcccC
Q psy11588        394 HIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCD  436 (459)
Q Consensus       394 H~~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~  436 (459)
                      |++ .|.+++||.|++|++.|.....|..|+++|++++||.|+
T Consensus         3 h~~-~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2emz_A            3 SGS-SGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGPS   44 (46)
T ss_dssp             CCS-CSSCCCSCCCSSSCCCCSSHHHHHHHHHHHHHTTCCCSC
T ss_pred             CCc-CCCCCCCeECCCCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            455 788899999999999999999999999999999999997

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.93  E-value=1.2e-10  Score=71.75  Aligned_cols=38  Identities=24%  Similarity=0.462  Sum_probs=34.0

Q ss_pred             hcCCCCccccccchhccCChHHHHHHHHHhCCCCCccc
Q psy11588        398 AHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVC  435 (459)
Q Consensus       398 ~H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C  435 (459)
                      .|++++||.|++|++.|.....|..|+++|++++||.|
T Consensus         5 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2en2_A            5 SSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGPSSG   42 (42)
T ss_dssp             CCCSSCSEECTTTCCEESSHHHHHHHTHHHHSCCSSCC
T ss_pred             ccCCCCCEeCCCcChhhCCHHHHHHHHHHcCCCCCCCC
Confidence            67888899999999999999999999999999999887

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.92  E-value=1.5e-10  Score=72.21  Aligned_cols=42  Identities=24%  Similarity=0.307  Sum_probs=37.9

Q ss_pred             HHHhhcCCCCccccccchhccCChHHHHHHHHHhCCCCCcccC
Q psy11588        394 HIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCD  436 (459)
Q Consensus       394 H~~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~  436 (459)
                      |++ .|++++||.|++|++.|.....|..|+++|++++||.|.
T Consensus         3 H~~-~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eox_A            3 SGS-SGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSSG   44 (44)
T ss_dssp             CCC-CCCCCCCEEETTTTEEESSSHHHHTTHHHHCCCCCCSCC
T ss_pred             CCc-CCCCCCCeECcccCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            455 788899999999999999999999999999999999984

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.92  E-value=7.8e-10  Score=69.57  Aligned_cols=40  Identities=23%  Similarity=0.353  Sum_probs=37.3

Q ss_pred             hcCCCCccccccchhccCChHHHHHHHHHhCCCCCcccCc
Q psy11588        398 AHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDM  437 (459)
Q Consensus       398 ~H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~~  437 (459)
                      .|.++++|.|++|++.|.....|..|+++|++++||.|++
T Consensus         6 ~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eom_A            6 SGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCSSCCCSSSCCCCSSHHHHHHHHHHHSSCCCSSCCC
T ss_pred             CCCCCCCcCCCCCCCeeCChHHHHHHHHHhCCCCCCCCCC
Confidence            6888999999999999999999999999999999999974

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=98.91  E-value=7.2e-10  Score=77.47  Aligned_cols=56  Identities=38%  Similarity=0.799  Sum_probs=36.7

Q ss_pred             CCCCcccccc--ccccccChHHHHHHHHHcCCCCCccccc--ccccccccchHHHHHhhh
Q psy11588        316 EKVRDHQCSV--CGKAFADITNMKVHMRIHTGEKKYVCET--CGASFVQWGSLNQHNLVH  371 (459)
Q Consensus       316 ~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~h  371 (459)
                      ...++|.|..  |++.|.....|..|+++|.++++|.|++  |++.|.....|..|+++|
T Consensus        13 ~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~f~~~~~l~~H~~~H   72 (72)
T 2epa_A           13 SRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH   72 (72)
T ss_dssp             CCCCCEECSSTTTCCEESSHHHHHHHHHHHSSSCSEECCCTTCCCEESSHHHHHHHTTTC
T ss_pred             cccCceeCCCCCCccccCCHHHHHHHHHhcCCCCCccCCCCCCCcccCCHHHHHhHhhcC
Confidence            3445666666  7777777777777776666666777743  766666666666666544

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.91  E-value=1.6e-10  Score=72.86  Aligned_cols=42  Identities=21%  Similarity=0.269  Sum_probs=37.9

Q ss_pred             HHHhhcCCCCccccccchhccCChHHHHHHHHHhCCCCCcccC
Q psy11588        394 HIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCD  436 (459)
Q Consensus       394 H~~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~  436 (459)
                      |++ .|++++||.|++|++.|.....|..|+++|++++||.|+
T Consensus         3 H~~-~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2en3_A            3 SGS-SGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGPS   44 (46)
T ss_dssp             CCC-CSCCCCSEECSSSCCEESSSHHHHHHHHHHHHSCCSSCS
T ss_pred             ccc-ccCCCCCeeCcccChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            555 788899999999999999999999999999999999996

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.91  E-value=8.6e-10  Score=72.08  Aligned_cols=46  Identities=22%  Similarity=0.448  Sum_probs=29.8

Q ss_pred             cCCCCccccccccccccChHHHHHHHH-HcCCCCCcccccccccccc
Q psy11588        315 HEKVRDHQCSVCGKAFADITNMKVHMR-IHTGEKKYVCETCGASFVQ  360 (459)
Q Consensus       315 h~~~~~~~C~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~C~~~f~~  360 (459)
                      |.++++|.|++|++.|.....|..|++ +|.++++|.|++|++.|.+
T Consensus         7 ~~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C~k~F~~   53 (54)
T 2eps_A            7 GSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS   53 (54)
T ss_dssp             CCSSCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSSSSCCSSCC
T ss_pred             CCCCCCeECCCCCcccCCHHHHHHHHHHhcCCCCCccCCCCCCCCCC
Confidence            445566666666666666666666665 6666666666666666654

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.90  E-value=5.7e-10  Score=69.86  Aligned_cols=40  Identities=28%  Similarity=0.418  Sum_probs=37.6

Q ss_pred             hcCCCCccccccchhccCChHHHHHHHHHhCCCCCcccCc
Q psy11588        398 AHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDM  437 (459)
Q Consensus       398 ~H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~~  437 (459)
                      .|+++++|+|++|++.|.....|..|+++|++++||.|++
T Consensus         6 ~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (45)
T 2epu_A            6 SGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPSSG   45 (45)
T ss_dssp             CCCSCCSEEETTTTEEESSHHHHHHHHTTTSSCCCCCSCC
T ss_pred             CCCCCcCccCCCCCCccCChHHHHHHHHHhCCCCCCCCCC
Confidence            6888999999999999999999999999999999999974

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.89  E-value=3.7e-10  Score=70.32  Aligned_cols=42  Identities=21%  Similarity=0.210  Sum_probs=36.1

Q ss_pred             HHHhhcCCCCccccccchhccCChHHHHHHHHHhCCCCCcccC
Q psy11588        394 HIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCD  436 (459)
Q Consensus       394 H~~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~  436 (459)
                      |++ .|++++||.|++|++.|...+.|..|+++|++++||.|.
T Consensus         3 H~~-~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~~g   44 (44)
T 2epv_A            3 SGS-SGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSSG   44 (44)
T ss_dssp             CCC-CCCCCCSEECSSSCCEESSHHHHHHHHGGGSSCSCCCCC
T ss_pred             CCc-ccCCCcCeECCCCCcccCchHHHHHHHhHhcCCCCCCCC
Confidence            445 688888999999999999999999999999999998874

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.88  E-value=6.6e-10  Score=67.97  Aligned_cols=38  Identities=29%  Similarity=0.467  Sum_probs=35.5

Q ss_pred             hcCCCCccccccchhccCChHHHHHHHHHhCCCCCccc
Q psy11588        398 AHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVC  435 (459)
Q Consensus       398 ~H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C  435 (459)
                      .|++++||.|++|++.|.....|..|+++|++++||.|
T Consensus         4 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   41 (41)
T 2ept_A            4 GSSGQRVYECQECGKSFRQKGSLTLHERIHTGSGPSSG   41 (41)
T ss_dssp             SCCCCCCEECSSSCCEESSHHHHHHHGGGCCCCSCSCC
T ss_pred             ccCCCCCeECCCCCCCcCCHHHHHHHHHHhCCCCCcCC
Confidence            68889999999999999999999999999999999987

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=98.87  E-value=1.2e-09  Score=68.69  Aligned_cols=44  Identities=14%  Similarity=0.148  Sum_probs=41.4

Q ss_pred             ccccccCCCCCCcccccchhhccChhHHHHhhhhhcCCCccccCCC
Q psy11588        170 VCIKHSNLIPKCHSCQKCEESFDNCNNLWSHMFIKHENSDFVCNLC  215 (459)
Q Consensus       170 ~~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C  215 (459)
                      |+++|+++++  |.|++|++.|.+...|..|+++|.++++|.|++|
T Consensus         3 H~~~H~~~k~--~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ely_A            3 SGSSGTGEKP--FKCVECGKGFSRRSALNVHHKLHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCS--BCCSSSCCCBSSTTHHHHHHHHHSCCSSCSCCCC
T ss_pred             CCCCCCCCCC--cccCccCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            6778888888  9999999999999999999999999999999987

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.87  E-value=7.5e-11  Score=82.83  Aligned_cols=65  Identities=23%  Similarity=0.342  Sum_probs=54.1

Q ss_pred             HHHHHHHhhcCCCCccccccchhccCChHHHHHHHHHhCCCCCcccCccccccCChHHHHHHHHHhcCC
Q psy11588        390 SLESHIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVHLKK  458 (459)
Q Consensus       390 ~l~~H~~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~  458 (459)
                      .|..|++ .|.+.+|+.|+.|++.|. ...|..|+ .|.+++||.|+.|++.|. ...|..|+++|.++
T Consensus         4 ~L~~H~~-~~c~~r~~~C~~C~~~~~-~~~L~~H~-~~c~~~~~~C~~C~~~~~-~~~l~~H~~~c~~~   68 (75)
T 2d9k_A            4 GSSGHEE-TECPLRLAVCQHCDLELS-ILKLKEHE-DYCGARTELCGNCGRNVL-VKDLKTHPEVCGRE   68 (75)
T ss_dssp             CCSCCCC-CCCCCCCEECSSSCCEEC-HHHHHHHH-HHHHHCEEECSSSCCEEE-TTGGGTHHHHBTTB
T ss_pred             HHHhhCc-ccCCCcccCCcccChHhh-HHHHHHHH-hHcCCCceEcccCCCcCc-HHHHHHHHHHccCC
Confidence            3555665 678888999999999994 88899998 888999999999999877 58899999988765

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.86  E-value=1.8e-09  Score=67.89  Aligned_cols=44  Identities=16%  Similarity=0.124  Sum_probs=41.1

Q ss_pred             ccccccCCCCCCcccccchhhccChhHHHHhhhhhcCCCccccCCC
Q psy11588        170 VCIKHSNLIPKCHSCQKCEESFDNCNNLWSHMFIKHENSDFVCNLC  215 (459)
Q Consensus       170 ~~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C  215 (459)
                      |+++|+++++  |.|++|++.|.+...|..|+++|.++++|.|++|
T Consensus         3 h~~~h~~~k~--~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2elz_A            3 SGSSGSVEKP--YKCEDCGKGYNRRLNLDMHQRVHMGEKTSGPSSG   46 (46)
T ss_dssp             CCSCCCCCSS--CBCSSSCCBCSSHHHHHHHGGGGGSCCCCCSCCC
T ss_pred             CCCCCCCCCC--eeCcccCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            6677888888  9999999999999999999999999999999987

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.86  E-value=9.7e-10  Score=69.87  Aligned_cols=41  Identities=22%  Similarity=0.277  Sum_probs=38.6

Q ss_pred             hcCCCCccccc--cchhccCChHHHHHHHHHhCCCCCcccCcc
Q psy11588        398 AHTIRQKSICD--VCGKEFKMKKRLKEHMAVHTTDRPFVCDMC  438 (459)
Q Consensus       398 ~H~~~~~~~C~--~C~~~f~~~~~l~~H~~~H~~~~~~~C~~C  438 (459)
                      .|++++||.|+  .|++.|.....|..|+++|++++||+|++|
T Consensus         6 ~H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   48 (48)
T 2ent_A            6 SGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPSSG   48 (48)
T ss_dssp             SSCCCCCEECCSSSCCCEESSHHHHHHHHTTSCCCCSCSSCCC
T ss_pred             CcCCCCCeECCCCCCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            68889999998  899999999999999999999999999987

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.86  E-value=1.7e-09  Score=68.05  Aligned_cols=44  Identities=16%  Similarity=0.154  Sum_probs=41.1

Q ss_pred             ccccccCCCCCCcccccchhhccChhHHHHhhhhhcCCCccccCCC
Q psy11588        170 VCIKHSNLIPKCHSCQKCEESFDNCNNLWSHMFIKHENSDFVCNLC  215 (459)
Q Consensus       170 ~~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C  215 (459)
                      |+++|+++++  |.|++|++.|.+...|..|+++|.+++||.|++|
T Consensus         3 H~~~H~~~k~--~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytn_A            3 SGSSGTGKKP--YKCNECGKVFTQNSHLARHRGIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCSS--CBCTTTCCBCSSHHHHHHHGGGTSCCCCCSCCCC
T ss_pred             CCcCCCCCcC--eECCCCCCeeCCHHHHHHHhhhcCCCCCCCCCCC
Confidence            6677888888  9999999999999999999999999999999987

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.85  E-value=1.4e-09  Score=67.61  Aligned_cols=44  Identities=20%  Similarity=0.200  Sum_probs=40.0

Q ss_pred             ccccccCCCCCCcccccchhhccChhHHHHhhhhhcCCCccccCCC
Q psy11588        170 VCIKHSNLIPKCHSCQKCEESFDNCNNLWSHMFIKHENSDFVCNLC  215 (459)
Q Consensus       170 ~~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C  215 (459)
                      |++.|+++++  |.|++|++.|.+...|..|+++|.++++|.|++|
T Consensus         1 H~~~H~~~k~--~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   44 (44)
T 2emx_A            1 GSSGSSGEKP--FGCSCCEKAFSSKSYLLVHQQTHAEEKPSGPSSG   44 (44)
T ss_dssp             CCCCCSSCCC--EECSSSSCEESSHHHHHHHHHHHTSSCSCSCCCC
T ss_pred             CCCCcCCCcC--ccCCCCCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            3456788888  9999999999999999999999999999999987

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.85  E-value=1.6e-09  Score=68.14  Aligned_cols=44  Identities=16%  Similarity=0.157  Sum_probs=41.2

Q ss_pred             ccccccCCCCCCcccccchhhccChhHHHHhhhhhcCCCccccCCC
Q psy11588        170 VCIKHSNLIPKCHSCQKCEESFDNCNNLWSHMFIKHENSDFVCNLC  215 (459)
Q Consensus       170 ~~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C  215 (459)
                      |++.|+++++  |.|++|++.|.+...|..|+++|+++++|.|++|
T Consensus         3 H~~~H~~~k~--~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eml_A            3 SGSSGTGEKP--YECSVCGKAFSHRQSLSVHQRIHSGKKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSCCS--EECSSSCCEESSHHHHHHHHGGGSSCCCSCSSCC
T ss_pred             ccCCcCCCCC--eeCCCcCCccCCHHHHHHHHHHhcCCCCCCCCCC
Confidence            6778888888  9999999999999999999999999999999987

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=98.85  E-value=1.8e-09  Score=67.83  Aligned_cols=44  Identities=14%  Similarity=0.212  Sum_probs=41.0

Q ss_pred             ccccccCCCCCCcccccchhhccChhHHHHhhhhhcCCCccccCCC
Q psy11588        170 VCIKHSNLIPKCHSCQKCEESFDNCNNLWSHMFIKHENSDFVCNLC  215 (459)
Q Consensus       170 ~~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C  215 (459)
                      |+++|+++++  |.|++|++.|.+...|..|+++|.++++|.|+.|
T Consensus         3 H~~~H~~~k~--~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emk_A            3 SGSSGTGEKP--YECKECGKAFSQTTHLIQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSSCS--CBCSSSCCBCSCHHHHHHHHHHHSSCCCSSCCCC
T ss_pred             CCCccCCCCc--eECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            6677888888  9999999999999999999999999999999987

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.85  E-value=1.7e-09  Score=68.05  Aligned_cols=44  Identities=14%  Similarity=0.121  Sum_probs=41.2

Q ss_pred             ccccccCCCCCCcccccchhhccChhHHHHhhhhhcCCCccccCCC
Q psy11588        170 VCIKHSNLIPKCHSCQKCEESFDNCNNLWSHMFIKHENSDFVCNLC  215 (459)
Q Consensus       170 ~~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C  215 (459)
                      |+++|+++++  |.|++|++.|.+...|..|+++|+++++|.|++|
T Consensus         3 H~~~H~~~k~--~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eq4_A            3 SGSSGTGEKL--YNCKECGKSFSRAPCLLKHERLHSGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSSCCCC--CCBTTTTBCCSCHHHHHHHHHHCCSSSCCCCCCC
T ss_pred             CcccCCCCCC--eECCCCCCccCchHHHHHHHHhcCCCCCCCCCCC
Confidence            6778888888  9999999999999999999999999999999987

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.85  E-value=1.7e-09  Score=68.05  Aligned_cols=44  Identities=14%  Similarity=0.238  Sum_probs=41.1

Q ss_pred             ccccccCCCCCCcccccchhhccChhHHHHhhhhhcCCCccccCCC
Q psy11588        170 VCIKHSNLIPKCHSCQKCEESFDNCNNLWSHMFIKHENSDFVCNLC  215 (459)
Q Consensus       170 ~~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C  215 (459)
                      |+.+|+++++  |.|++|++.|.+...|..|+++|.++++|.|++|
T Consensus         3 H~~~H~~~k~--~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2em7_A            3 SGSSGTGEKP--YKCEECGKGFICRRDLYTHHMVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSSCCCS--EECSSSCCEESCHHHHHHHGGGGTTCCCSSTTCC
T ss_pred             CCCCCCCCcC--ccCCCccchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            6677888888  9999999999999999999999999999999987

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.85  E-value=1.7e-09  Score=67.95  Aligned_cols=44  Identities=16%  Similarity=0.166  Sum_probs=41.1

Q ss_pred             ccccccCCCCCCcccccchhhccChhHHHHhhhhhcCCCccccCCC
Q psy11588        170 VCIKHSNLIPKCHSCQKCEESFDNCNNLWSHMFIKHENSDFVCNLC  215 (459)
Q Consensus       170 ~~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C  215 (459)
                      |+++|+++++  |.|++|++.|.+...|..|+++|.++++|.|++|
T Consensus         3 H~~~H~~~k~--~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytq_A            3 SGSSGAGEKP--YGCSECGKAFSSKSYLIIHMRTHSGEKPSGPSSG   46 (46)
T ss_dssp             CSSCSSCCCS--CBCSSSCCBCSCHHHHHHHHTTTCCSCSSCCCCC
T ss_pred             CCcCcCCCCC--cCCCccChhhCChHHHHHHHHHhCCCCCCCCCCC
Confidence            6677888888  9999999999999999999999999999999987

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=98.85  E-value=1.8e-09  Score=67.90  Aligned_cols=44  Identities=11%  Similarity=0.119  Sum_probs=41.0

Q ss_pred             ccccccCCCCCCcccccchhhccChhHHHHhhhhhcCCCccccCCC
Q psy11588        170 VCIKHSNLIPKCHSCQKCEESFDNCNNLWSHMFIKHENSDFVCNLC  215 (459)
Q Consensus       170 ~~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C  215 (459)
                      |+++|+++++  |.|++|++.|.....|..|+++|.++++|.|++|
T Consensus         3 H~~~H~~~k~--~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em0_A            3 SGSSGMGEKT--WKCRECDMCFSQASSLRLHQNVHVGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSCCCCC--CCCSSSCCCCSSHHHHHHHGGGGSSSSCSCSSCC
T ss_pred             CcCccCCCcC--eECCCCCcccCCHHHHHHHHHHcCCCCCcCCCCC
Confidence            6677888888  9999999999999999999999999999999987

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.85  E-value=1.7e-09  Score=67.96  Aligned_cols=44  Identities=16%  Similarity=0.162  Sum_probs=41.1

Q ss_pred             ccccccCCCCCCcccccchhhccChhHHHHhhhhhcCCCccccCCC
Q psy11588        170 VCIKHSNLIPKCHSCQKCEESFDNCNNLWSHMFIKHENSDFVCNLC  215 (459)
Q Consensus       170 ~~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C  215 (459)
                      |+++|+++++  |.|++|++.|.+...|..|+++|+++++|.|++|
T Consensus         3 H~~~H~~~k~--~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epz_A            3 SGSSGTGEKP--FDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSCCCCCS--BCCTTTCCCBSSHHHHHHHHTTTTTCCCCSSCCC
T ss_pred             CCCCcCCCCC--eECCCCCceeCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            6778888888  9999999999999999999999999999999987

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.84  E-value=1.8e-09  Score=67.92  Aligned_cols=44  Identities=16%  Similarity=0.154  Sum_probs=41.1

Q ss_pred             ccccccCCCCCCcccccchhhccChhHHHHhhhhhcCCCccccCCC
Q psy11588        170 VCIKHSNLIPKCHSCQKCEESFDNCNNLWSHMFIKHENSDFVCNLC  215 (459)
Q Consensus       170 ~~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C  215 (459)
                      |+++|+++++  |.|++|++.|.+...|..|+++|.++++|.|++|
T Consensus         3 H~~~H~~~~~--~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eoe_A            3 SGSSGTGEKP--YKCNECGKVFTQNSHLANHQRIHTGVKPSGPSSG   46 (46)
T ss_dssp             CSSCCCCCCS--SEETTTTEECSSHHHHHHHHGGGSCCCSCSSCCC
T ss_pred             CCCCCCCCCC--eECCCcChhhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            6677888888  9999999999999999999999999999999987

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.84  E-value=2e-09  Score=67.68  Aligned_cols=44  Identities=11%  Similarity=0.132  Sum_probs=41.0

Q ss_pred             ccccccCCCCCCcccccchhhccChhHHHHhhhhhcCCCccccCCC
Q psy11588        170 VCIKHSNLIPKCHSCQKCEESFDNCNNLWSHMFIKHENSDFVCNLC  215 (459)
Q Consensus       170 ~~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C  215 (459)
                      |+++|+++++  |.|++|++.|.+...|..|+++|.++++|.|++|
T Consensus         3 h~~~h~~~k~--~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytm_A            3 SGSSGTGEKP--YKCMECGKAFGDNSSCTQHQRLHTGQRPSGPSSG   46 (46)
T ss_dssp             SCCCCSSCCS--SSBTTTTBCCSSHHHHHHHHHHHHSCCCCCCCCC
T ss_pred             CCcCCCCCCC--cCCCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            6677888888  9999999999999999999999999999999987

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.84  E-value=2e-09  Score=67.70  Aligned_cols=44  Identities=16%  Similarity=0.108  Sum_probs=40.9

Q ss_pred             ccccccCCCCCCcccccchhhccChhHHHHhhhhhcCCCccccCCC
Q psy11588        170 VCIKHSNLIPKCHSCQKCEESFDNCNNLWSHMFIKHENSDFVCNLC  215 (459)
Q Consensus       170 ~~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C  215 (459)
                      |++.|+++++  |.|++|++.|.+...|..|+++|.++++|.|++|
T Consensus         3 H~~~H~~~~~--~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eov_A            3 SGSSGTGEKP--YKCSDCGKSFTWKSRLRIHQKCHTGERHSGPSSG   46 (46)
T ss_dssp             CCCCCSSCCS--CBCSSSCCBCSSHHHHHHHHHHHSCCSSCCSCCC
T ss_pred             CCCCCCCCCC--ccCCccChhhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            6677888888  9999999999999999999999999999999987

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.84  E-value=1.6e-09  Score=68.07  Aligned_cols=44  Identities=20%  Similarity=0.246  Sum_probs=41.2

Q ss_pred             ccccccCCCCCCcccccchhhccChhHHHHhhhhhcCCCccccCCC
Q psy11588        170 VCIKHSNLIPKCHSCQKCEESFDNCNNLWSHMFIKHENSDFVCNLC  215 (459)
Q Consensus       170 ~~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C  215 (459)
                      |+++|+++++  |.|++|++.|.+...|..|+++|.++++|.|++|
T Consensus         3 H~~~H~~~k~--~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emm_A            3 SGSSGTGERP--HKCNECGKSFIQSAHLIQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSCSSCCCS--EECSSSCCEESSHHHHHHHHHHHSCCCTTSSSCC
T ss_pred             CcCCcCCCCC--eeCCCCChhhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            6778888888  9999999999999999999999999999999988

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.84  E-value=1.7e-09  Score=68.03  Aligned_cols=44  Identities=14%  Similarity=0.095  Sum_probs=41.1

Q ss_pred             ccccccCCCCCCcccccchhhccChhHHHHhhhhhcCCCccccCCC
Q psy11588        170 VCIKHSNLIPKCHSCQKCEESFDNCNNLWSHMFIKHENSDFVCNLC  215 (459)
Q Consensus       170 ~~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C  215 (459)
                      |+++|+++++  |.|++|++.|.+...|..|+++|.++++|.|++|
T Consensus         3 H~~~H~~~k~--~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emf_A            3 SGSSGTGGKH--FECTECGKAFTRKSTLSMHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSSSSSCC--EECSSSCCEESCHHHHHHHGGGTSCSSCSCCCCC
T ss_pred             cccccCCCCC--eECCCCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            6778888888  9999999999999999999999999999999987

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.84  E-value=1.6e-09  Score=68.16  Aligned_cols=44  Identities=16%  Similarity=0.153  Sum_probs=41.2

Q ss_pred             ccccccCCCCCCcccccchhhccChhHHHHhhhhhcCCCccccCCC
Q psy11588        170 VCIKHSNLIPKCHSCQKCEESFDNCNNLWSHMFIKHENSDFVCNLC  215 (459)
Q Consensus       170 ~~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C  215 (459)
                      |+++|+++++  |.|++|++.|.+...|..|+++|.++++|.|++|
T Consensus         3 H~~~H~~~k~--~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ene_A            3 SGSSGTGEKP--YKCNECGKVFRHNSYLSRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSCCCSSS--EECSSSCCEESSHHHHHHHHTTTCCCCCCSCCCC
T ss_pred             cccCCCCCCC--eECCCCCchhCChHHHHHHHhhcCCCCCCCCCCC
Confidence            6778888888  9999999999999999999999999999999988

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.84  E-value=2e-09  Score=67.68  Aligned_cols=44  Identities=16%  Similarity=0.182  Sum_probs=40.9

Q ss_pred             ccccccCCCCCCcccccchhhccChhHHHHhhhhhcCCCccccCCC
Q psy11588        170 VCIKHSNLIPKCHSCQKCEESFDNCNNLWSHMFIKHENSDFVCNLC  215 (459)
Q Consensus       170 ~~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C  215 (459)
                      |+..|+++.+  |.|++|++.|.+...|..|+++|+++++|.|++|
T Consensus         3 H~~~H~~~~~--~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoq_A            3 SGSSGTGEKP--FKCDICGKSFCGRSRLNRHSMVHTAEKPSGPSSG   46 (46)
T ss_dssp             CCCCSSSSCS--CCCSSSCCCCSSHHHHHHHHHHTTCCCSSSCCCC
T ss_pred             CCCCCCCCCC--cCCCcCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            6677888888  9999999999999999999999999999999987

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=98.84  E-value=1.7e-09  Score=67.99  Aligned_cols=44  Identities=14%  Similarity=0.135  Sum_probs=41.2

Q ss_pred             ccccccCCCCCCcccccchhhccChhHHHHhhhhhcCCCccccCCC
Q psy11588        170 VCIKHSNLIPKCHSCQKCEESFDNCNNLWSHMFIKHENSDFVCNLC  215 (459)
Q Consensus       170 ~~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C  215 (459)
                      |++.|+++++  |.|++|++.|.+...|..|+++|.+++||.|++|
T Consensus         3 H~~~H~~~k~--~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2el4_A            3 SGSSGTGVKP--YGCSQCAKTFSLKSQLIVHQRSHTGVKPSGPSSG   46 (46)
T ss_dssp             CCCCSCCCCS--EECSSSSCEESSHHHHHHHGGGSSSCCCSCCTTC
T ss_pred             cccCCCCCCc--eECCCCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            6777888888  9999999999999999999999999999999987

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.84  E-value=1.6e-09  Score=68.12  Aligned_cols=44  Identities=18%  Similarity=0.174  Sum_probs=41.0

Q ss_pred             ccccccCCCCCCcccccchhhccChhHHHHhhhhhcCCCccccCCC
Q psy11588        170 VCIKHSNLIPKCHSCQKCEESFDNCNNLWSHMFIKHENSDFVCNLC  215 (459)
Q Consensus       170 ~~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C  215 (459)
                      |+++|+++.+  |.|++|++.|.+...|..|+++|.++++|.|++|
T Consensus         3 H~~~H~~~~~--~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em5_A            3 SGSSGSSTKS--HQCHECGRGFTLKSHLNQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCSCS--EECSSSCCEESSHHHHHHHHTTTSCSCCSSCCCC
T ss_pred             CcCCCCCCCC--eECCcCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            6677888888  9999999999999999999999999999999987

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.83  E-value=1.6e-09  Score=68.06  Aligned_cols=44  Identities=16%  Similarity=0.237  Sum_probs=41.1

Q ss_pred             ccccccCCCCCCcccccchhhccChhHHHHhhhhhcCCCccccCCC
Q psy11588        170 VCIKHSNLIPKCHSCQKCEESFDNCNNLWSHMFIKHENSDFVCNLC  215 (459)
Q Consensus       170 ~~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C  215 (459)
                      |+++|+++++  |.|++|++.|.+...|..|+++|.++++|.|++|
T Consensus         3 H~~~H~~~k~--~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emp_A            3 SGSSGTGVKP--YMCNECGKAFSVYSSLTTHQVIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSCSSCCCS--EECSSSCCEESCHHHHHHHHHHHHCCSCCSCCCC
T ss_pred             cccccCCCcC--eECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            6678888888  9999999999999999999999999999999987

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.83  E-value=1.6e-09  Score=68.06  Aligned_cols=44  Identities=16%  Similarity=0.206  Sum_probs=41.1

Q ss_pred             ccccccCCCCCCcccccchhhccChhHHHHhhhhhcCCCccccCCC
Q psy11588        170 VCIKHSNLIPKCHSCQKCEESFDNCNNLWSHMFIKHENSDFVCNLC  215 (459)
Q Consensus       170 ~~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C  215 (459)
                      |+.+|+++++  |.|++|++.|.+...|..|+++|.++++|.|++|
T Consensus         3 H~~~H~~~k~--~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoo_A            3 SGSSGSGERP--YGCNECGKNFGRHSHLIEHLKRHFREKSSGPSSG   46 (46)
T ss_dssp             CCCCCSCCCC--EECSSSCCEESSHHHHHHHHHHHHSTTSSCCSCC
T ss_pred             CCCCCCCCCC--EEccccCcccCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            6778888888  9999999999999999999999999999999987

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.83  E-value=1.9e-09  Score=67.76  Aligned_cols=44  Identities=16%  Similarity=0.196  Sum_probs=41.1

Q ss_pred             ccccccCCCCCCcccccchhhccChhHHHHhhhhhcCCCccccCCC
Q psy11588        170 VCIKHSNLIPKCHSCQKCEESFDNCNNLWSHMFIKHENSDFVCNLC  215 (459)
Q Consensus       170 ~~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C  215 (459)
                      |+++|+++++  |.|++|++.|.+...|..|+++|.++++|.|++|
T Consensus         3 H~~~H~~~k~--~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytr_A            3 SGSSGTGEKP--YKCNECGKAFSQTSKLARHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             SSCCCSSCCT--TCCTTTCCCCSSHHHHHHHHTTTTTCSCCCSCCC
T ss_pred             CCcCCCCCcC--cCCCCCCCccCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            6678888888  9999999999999999999999999999999987

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.83  E-value=1.8e-09  Score=67.83  Aligned_cols=44  Identities=16%  Similarity=0.150  Sum_probs=41.1

Q ss_pred             ccccccCCCCCCcccccchhhccChhHHHHhhhhhcCCCccccCCC
Q psy11588        170 VCIKHSNLIPKCHSCQKCEESFDNCNNLWSHMFIKHENSDFVCNLC  215 (459)
Q Consensus       170 ~~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C  215 (459)
                      |+.+|+++++  |.|++|++.|.+...|..|+++|.++++|.|++|
T Consensus         3 H~~~H~~~k~--~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emy_A            3 SGSSGTGENP--YECHECGKAFSRKYQLISHQRTHAGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCC--EECSSSCCEESSHHHHHHHHHHHTTSCCSCSSCC
T ss_pred             CCCCCCCCcC--cCCCCCCcccCcHHHHHHHHHHcCCCCCCCCCCC
Confidence            6677888888  9999999999999999999999999999999987

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.83  E-value=1.7e-09  Score=68.01  Aligned_cols=44  Identities=14%  Similarity=0.169  Sum_probs=41.2

Q ss_pred             ccccccCCCCCCcccccchhhccChhHHHHhhhhhcCCCccccCCC
Q psy11588        170 VCIKHSNLIPKCHSCQKCEESFDNCNNLWSHMFIKHENSDFVCNLC  215 (459)
Q Consensus       170 ~~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C  215 (459)
                      |+..|+++++  |.|++|++.|.+...|..|+++|.++++|.|++|
T Consensus         3 H~~~H~~~~~--~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytg_A            3 SGSSGTGEKP--FKCGECGKSYNQRVHLTQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSCCS--EECTTTCCEESSSHHHHTTGGGGSSCCSSCSCCC
T ss_pred             CCCCCCCCCC--eECCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            6677888888  9999999999999999999999999999999988

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=98.83  E-value=2e-09  Score=67.67  Aligned_cols=44  Identities=14%  Similarity=0.107  Sum_probs=41.1

Q ss_pred             ccccccCCCCCCcccccchhhccChhHHHHhhhhhcCCCccccCCC
Q psy11588        170 VCIKHSNLIPKCHSCQKCEESFDNCNNLWSHMFIKHENSDFVCNLC  215 (459)
Q Consensus       170 ~~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C  215 (459)
                      |+++|+++++  |.|++|++.|.....|..|+++|.++++|.|+.|
T Consensus         3 H~~~H~~~k~--~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ema_A            3 SGSSGTGEKR--YKCNECGKVFSRNSQLSQHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             SCSSCTTSCC--EECSSSCCEESSHHHHHHHHTGGGCCCCCSSSCC
T ss_pred             CccCCCCCcC--cCCCCCcchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            6677888888  9999999999999999999999999999999987

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.83  E-value=2e-09  Score=67.64  Aligned_cols=44  Identities=18%  Similarity=0.142  Sum_probs=41.1

Q ss_pred             ccccccCCCCCCcccccchhhccChhHHHHhhhhhcCCCccccCCC
Q psy11588        170 VCIKHSNLIPKCHSCQKCEESFDNCNNLWSHMFIKHENSDFVCNLC  215 (459)
Q Consensus       170 ~~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C  215 (459)
                      |+.+|+++.+  |.|++|++.|.+...|..|+++|.++++|.|++|
T Consensus         3 H~~~H~~~k~--~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eme_A            3 SGSSGSGEKP--YVCDYCGKAFGLSAELVRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCTTCCCCS--EECSSSCCEESSHHHHHHHHGGGCCCSCCSSCCC
T ss_pred             CCCCCCCCCC--eECCCCChhhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            6677888888  9999999999999999999999999999999987

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.83  E-value=1.9e-09  Score=67.78  Aligned_cols=44  Identities=16%  Similarity=0.139  Sum_probs=41.2

Q ss_pred             ccccccCCCCCCcccccchhhccChhHHHHhhhhhcCCCccccCCC
Q psy11588        170 VCIKHSNLIPKCHSCQKCEESFDNCNNLWSHMFIKHENSDFVCNLC  215 (459)
Q Consensus       170 ~~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C  215 (459)
                      |+++|+++.+  |.|++|++.|.+...|..|+++|.++++|.|++|
T Consensus         3 h~~~H~~~~~--~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en6_A            3 SGSSGSGEKP--YGCNECGKTFSQKSILSAHQRTHTGEKPSGPSSG   46 (46)
T ss_dssp             CSCCCCSSCC--EEETTTTEEESSHHHHHHHHHHHSSCCCSSSCCC
T ss_pred             CCCccCCCcC--eECCCCCcccCchHHHHHHHHHcCCCCCCCCCCC
Confidence            6677888888  9999999999999999999999999999999987

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.83  E-value=2.1e-09  Score=67.59  Aligned_cols=44  Identities=20%  Similarity=0.247  Sum_probs=41.0

Q ss_pred             ccccccCCCCCCcccccchhhccChhHHHHhhhhhcCCCccccCCC
Q psy11588        170 VCIKHSNLIPKCHSCQKCEESFDNCNNLWSHMFIKHENSDFVCNLC  215 (459)
Q Consensus       170 ~~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C  215 (459)
                      |++.|+++++  |.|++|++.|.+...|..|+++|.+++||.|++|
T Consensus         3 H~~~H~~~~~--~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eop_A            3 SGSSGTGEKP--HECRECGKSFSFNSQLIVHQRIHTGENPSGPSSG   46 (46)
T ss_dssp             CCCSCCCCCS--CBCTTTCCBCSSHHHHHHHHTTTTTSCCSCCCCC
T ss_pred             CccccCCCCC--eeCCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            6677888888  9999999999999999999999999999999987

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.83  E-value=1.9e-09  Score=67.73  Aligned_cols=44  Identities=18%  Similarity=0.196  Sum_probs=41.1

Q ss_pred             ccccccCCCCCCcccccchhhccChhHHHHhhhhhcCCCccccCCC
Q psy11588        170 VCIKHSNLIPKCHSCQKCEESFDNCNNLWSHMFIKHENSDFVCNLC  215 (459)
Q Consensus       170 ~~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C  215 (459)
                      |+++|+++++  |.|++|++.|.+...|..|+++|.++++|.|.+|
T Consensus         3 H~~~H~~~~~--~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2yso_A            3 SGSSGSREKS--HQCRECGEIFFQYVSLIEHQVLHMGQKNSGPSSG   46 (46)
T ss_dssp             CSCCSSCCCC--EECTTTCCEESSHHHHHHHHHHHSCCSCCCTTCC
T ss_pred             cccccCCCCC--EEccccChhhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            6778888888  9999999999999999999999999999999987

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.82  E-value=2e-09  Score=67.61  Aligned_cols=44  Identities=18%  Similarity=0.166  Sum_probs=41.1

Q ss_pred             ccccccCCCCCCcccccchhhccChhHHHHhhhhhcCCCccccCCC
Q psy11588        170 VCIKHSNLIPKCHSCQKCEESFDNCNNLWSHMFIKHENSDFVCNLC  215 (459)
Q Consensus       170 ~~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C  215 (459)
                      |++.|+++++  |.|++|++.|.+...|..|+++|.++++|.|++|
T Consensus         3 H~~~H~~~k~--~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytd_A            3 SGSSGSGEKP--YKCSECGKAFHRHTHLNEHRRIHTGYRPSGPSSG   46 (46)
T ss_dssp             CCCCSCCCCS--EECSSSCCEESSHHHHHHHHHHHTCCCSSCSSCC
T ss_pred             CccccCCCcC--eECCCCCCeeCChHHHHHHHHHcCCCCCCCCCCC
Confidence            6677888888  9999999999999999999999999999999987

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.82  E-value=1.9e-09  Score=67.74  Aligned_cols=44  Identities=16%  Similarity=0.157  Sum_probs=41.2

Q ss_pred             ccccccCCCCCCcccccchhhccChhHHHHhhhhhcCCCccccCCC
Q psy11588        170 VCIKHSNLIPKCHSCQKCEESFDNCNNLWSHMFIKHENSDFVCNLC  215 (459)
Q Consensus       170 ~~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C  215 (459)
                      |+++|+++++  |.|++|++.|.+...|..|+++|.++++|.|++|
T Consensus         3 H~~~h~~~k~--~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ysp_A            3 SGSSGTGEKP--YKCEKCGKGYNSKFNLDMHQKVHTGERPSGPSSG   46 (46)
T ss_dssp             CCCCCSSCCS--EEETTTTEEESCHHHHHHHHTTSCSCCSSCCSCC
T ss_pred             CCcCCCCCCC--eECCCCCCccCCHHHHHHHHHhhCCCCCCCCCCC
Confidence            6677888888  9999999999999999999999999999999987

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=98.82  E-value=2.2e-09  Score=67.45  Aligned_cols=44  Identities=16%  Similarity=0.184  Sum_probs=41.1

Q ss_pred             ccccccCCCCCCcccccchhhccChhHHHHhhhhhcCCCccccCCC
Q psy11588        170 VCIKHSNLIPKCHSCQKCEESFDNCNNLWSHMFIKHENSDFVCNLC  215 (459)
Q Consensus       170 ~~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C  215 (459)
                      |+++|+++++  |.|++|++.|.+...|..|+++|.++++|.|++|
T Consensus         3 H~~~H~~~k~--~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em9_A            3 SGSSGTGEKP--YNCKECGKSFRWASCLLKHQRVHSGEKPSGPSSG   46 (46)
T ss_dssp             SCCSCCCCCS--EECSSSCCEESSHHHHHHHGGGGTSCCCCSTTCC
T ss_pred             CCCCCCCCcC--eECCccccccCChHHHHHHHHHhCCCCCCCCCCC
Confidence            6677888888  9999999999999999999999999999999987

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.82  E-value=2.1e-09  Score=67.59  Aligned_cols=44  Identities=18%  Similarity=0.175  Sum_probs=40.9

Q ss_pred             ccccccCCCCCCcccccchhhccChhHHHHhhhhhcCCCccccCCC
Q psy11588        170 VCIKHSNLIPKCHSCQKCEESFDNCNNLWSHMFIKHENSDFVCNLC  215 (459)
Q Consensus       170 ~~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C  215 (459)
                      |+.+|+++++  |.|++|++.|.+...|..|+++|.++++|.|++|
T Consensus         3 H~~~H~~~k~--~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ep2_A            3 SGSSGTGEKP--YECSICGKSFTKKSQLHVHQQIHTGEKPSGPSSG   46 (46)
T ss_dssp             SSSCSSCCCS--EECSSSCCEESSHHHHHHHHHTTSSCCSCCSCCC
T ss_pred             CCCCCCCCcC--cCCCCCCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            6677888888  9999999999999999999999999999999987

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.82  E-value=2.1e-09  Score=67.59  Aligned_cols=44  Identities=18%  Similarity=0.184  Sum_probs=41.1

Q ss_pred             ccccccCCCCCCcccccchhhccChhHHHHhhhhhcCCCccccCCC
Q psy11588        170 VCIKHSNLIPKCHSCQKCEESFDNCNNLWSHMFIKHENSDFVCNLC  215 (459)
Q Consensus       170 ~~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C  215 (459)
                      |+.+|+++++  |.|++|++.|.+...|..|+++|.+++||.|++|
T Consensus         3 H~~~H~~~~~--~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~c   46 (46)
T 2ytk_A            3 SGSSGSGEKP--YKCNECGKVFTQNSHLTNHWRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSSSSCS--EECSSSCCEESSHHHHHHHHHHHSSSSCSSCCCC
T ss_pred             CcccCCCCCC--EeCCcCCCccCCHHHHHHHHHHHCCCCCCCCCCC
Confidence            6677888888  9999999999999999999999999999999987

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.82  E-value=2e-09  Score=67.64  Aligned_cols=44  Identities=16%  Similarity=0.174  Sum_probs=41.0

Q ss_pred             ccccccCCCCCCcccccchhhccChhHHHHhhhhhcCCCccccCCC
Q psy11588        170 VCIKHSNLIPKCHSCQKCEESFDNCNNLWSHMFIKHENSDFVCNLC  215 (459)
Q Consensus       170 ~~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C  215 (459)
                      |++.|+++++  |.|++|++.|.+...|..|+++|.++++|.|++|
T Consensus         3 h~~~H~~~k~--~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2enc_A            3 SGSSGSGEKP--FKCEECGKGFYTNSQCYSHQRSHSGEKPSGPSSG   46 (46)
T ss_dssp             CSSCCCCCCS--EECSSSCCEESSHHHHHHHHHHSCCSSCCSSCCC
T ss_pred             CCCCCCCCCC--cCCCCCCCcCCChHHHHHHHHHhCCCCCCCCCCC
Confidence            6677888888  9999999999999999999999999999999987

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.82  E-value=1.9e-09  Score=67.71  Aligned_cols=44  Identities=16%  Similarity=0.207  Sum_probs=40.9

Q ss_pred             ccccccCCCCCCcccccchhhccChhHHHHhhhhhcCCCccccCCC
Q psy11588        170 VCIKHSNLIPKCHSCQKCEESFDNCNNLWSHMFIKHENSDFVCNLC  215 (459)
Q Consensus       170 ~~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C  215 (459)
                      |++.|+++++  |.|++|++.|.+...|..|+++|.+++||.|++|
T Consensus         3 H~~~H~~~k~--~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2eq0_A            3 SGSSGTGEKP--YKCHECGKVFRRNSHLARHQLIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCTTCCCC--EECTTTCCEESSHHHHHHHHTTTCCCCCSCCSCC
T ss_pred             CCcCCCCCCC--eECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            6677888888  9999999999999999999999999999999987

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.82  E-value=1.9e-09  Score=67.78  Aligned_cols=44  Identities=18%  Similarity=0.184  Sum_probs=41.0

Q ss_pred             ccccccCCCCCCcccccchhhccChhHHHHhhhhhcCCCccccCCC
Q psy11588        170 VCIKHSNLIPKCHSCQKCEESFDNCNNLWSHMFIKHENSDFVCNLC  215 (459)
Q Consensus       170 ~~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C  215 (459)
                      |+.+|+++++  |.|++|++.|.+...|..|+++|.++++|.|++|
T Consensus         3 H~~~H~~~k~--~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emh_A            3 SGSSGTGERP--YICTVCGKAFTDRSNLIKHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSCSCCCS--EECTTTCCEESSHHHHHHHHHHHHCSSCSSSCCC
T ss_pred             CCCCCCCCCC--cCCCCCCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            6677888888  9999999999999999999999999999999987

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.82  E-value=1.8e-09  Score=67.84  Aligned_cols=44  Identities=14%  Similarity=0.154  Sum_probs=41.2

Q ss_pred             ccccccCCCCCCcccccchhhccChhHHHHhhhhhcCCCccccCCC
Q psy11588        170 VCIKHSNLIPKCHSCQKCEESFDNCNNLWSHMFIKHENSDFVCNLC  215 (459)
Q Consensus       170 ~~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C  215 (459)
                      |+++|+++++  |.|++|++.|.....|..|+++|.++++|.|++|
T Consensus         3 H~~~H~~~k~--~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2yu8_A            3 SGSSGTGEKP--YKCNECGKVFTQNSHLARHRRVHTGGKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCSS--EECSSSCCEESSSHHHHHHTHHHHSCCCSCSCCC
T ss_pred             cCcCCCCCCC--eECCcCCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            6677888888  9999999999999999999999999999999987

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.81  E-value=2.3e-09  Score=67.33  Aligned_cols=44  Identities=18%  Similarity=0.183  Sum_probs=40.8

Q ss_pred             ccccccCCCCCCcccccchhhccChhHHHHhhhhhcCCCccccCCC
Q psy11588        170 VCIKHSNLIPKCHSCQKCEESFDNCNNLWSHMFIKHENSDFVCNLC  215 (459)
Q Consensus       170 ~~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C  215 (459)
                      |+.+|+++++  |.|++|++.|.+...|..|+++|.++++|.|++|
T Consensus         3 H~~~H~~~k~--~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ytj_A            3 SGSSGTGEKP--YICAECGKAFTIRSNLIKHQKIHTKQKPSGPSSG   46 (46)
T ss_dssp             SSCTTSSCCS--EECSSSCCEESSHHHHHHHHHHTSCCCCSSCSCC
T ss_pred             cccCCCCCcC--eECCCCChhhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            6677888888  9999999999999999999999999999999987

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.81  E-value=2.3e-09  Score=67.38  Aligned_cols=44  Identities=14%  Similarity=0.067  Sum_probs=40.9

Q ss_pred             ccccccCCCCCCcccccchhhccChhHHHHhhhhhcCCCccccCCC
Q psy11588        170 VCIKHSNLIPKCHSCQKCEESFDNCNNLWSHMFIKHENSDFVCNLC  215 (459)
Q Consensus       170 ~~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C  215 (459)
                      ++++|+++++  |.|++|++.|.+...|..|+++|.++++|.|++|
T Consensus         3 h~~~h~~~k~--~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em8_A            3 SGSSGSGEKP--YKCVECGKGYKRRLDLDFHQRVHTGEKLSGPSSG   46 (46)
T ss_dssp             CCCCCCSCCS--EECSSSCCEESSHHHHHHHHHHHHCCCCCCSCCC
T ss_pred             CCCCCCCCCC--eECcccCchhCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            5677888888  9999999999999999999999999999999987

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.81  E-value=2.4e-09  Score=67.29  Aligned_cols=44  Identities=18%  Similarity=0.233  Sum_probs=41.1

Q ss_pred             ccccccCCCCCCcccccchhhccChhHHHHhhhhhcCCCccccCCC
Q psy11588        170 VCIKHSNLIPKCHSCQKCEESFDNCNNLWSHMFIKHENSDFVCNLC  215 (459)
Q Consensus       170 ~~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C  215 (459)
                      |+.+|+++.+  |.|++|++.|.+...|..|+++|.++++|.|++|
T Consensus         3 H~~~H~~~~~--~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2en1_A            3 SGSSGSGEKP--FKCEECGKRFTQNSQLHSHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             STTCCCCCCS--EEETTTTEEESSHHHHHHHGGGGSCCCCSCCCCC
T ss_pred             cccCCCCCCC--eeCCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            6677888888  9999999999999999999999999999999987

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.81  E-value=2.2e-09  Score=67.49  Aligned_cols=44  Identities=14%  Similarity=0.120  Sum_probs=41.0

Q ss_pred             ccccccCCCCCCcccccchhhccChhHHHHhhhhhcCCCccccCCC
Q psy11588        170 VCIKHSNLIPKCHSCQKCEESFDNCNNLWSHMFIKHENSDFVCNLC  215 (459)
Q Consensus       170 ~~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C  215 (459)
                      |+++|+++++  |.|++|++.|.+...|..|+++|.++++|.|++|
T Consensus         3 H~~~H~~~k~--~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epw_A            3 SGSSGTGEKP--CKCTECGKAFCWKSQLIMHQRTHVDDKHSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCS--EECSSSCCEESSSHHHHHHHHHCCSCCCSCCCCC
T ss_pred             CcccCCCCCC--eeCCCCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            6677888888  9999999999999999999999999999999987

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.81  E-value=2.3e-09  Score=67.39  Aligned_cols=44  Identities=16%  Similarity=0.132  Sum_probs=41.0

Q ss_pred             ccccccCCCCCCcccccchhhccChhHHHHhhhhhcCCCccccCCC
Q psy11588        170 VCIKHSNLIPKCHSCQKCEESFDNCNNLWSHMFIKHENSDFVCNLC  215 (459)
Q Consensus       170 ~~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C  215 (459)
                      |+++|+++++  |.|++|++.|.+...|..|+++|.++++|.|+.|
T Consensus         3 H~~~H~~~~~--~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en8_A            3 SGSSGSGEKS--HTCDECGKNFCYISALRIHQRVHMGEKCSGPSSG   46 (46)
T ss_dssp             CCCCCCCCSS--EECTTTCCEESSHHHHHHHHTTTCCSCSSCCSCC
T ss_pred             ccccCCCCCC--eECCCcCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            6677888888  9999999999999999999999999999999987

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=98.80  E-value=2.8e-09  Score=66.94  Aligned_cols=44  Identities=18%  Similarity=0.223  Sum_probs=40.9

Q ss_pred             ccccccCCCCCCcccccchhhccChhHHHHhhhhhcCCCccccCCC
Q psy11588        170 VCIKHSNLIPKCHSCQKCEESFDNCNNLWSHMFIKHENSDFVCNLC  215 (459)
Q Consensus       170 ~~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C  215 (459)
                      ++++|+++++  |.|++|++.|.+...|..|+++|.++++|.|++|
T Consensus         3 h~~~h~~~k~--~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2el6_A            3 SGSSGAGVNP--YKCSQCEKSFSGKLRLLVHQRMHTREKPSGPSSG   46 (46)
T ss_dssp             SCCSSCCCCS--EECSSSSCEESSHHHHHHHHGGGCCSSCCSCCCC
T ss_pred             CCCCCCCCCC--eECCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            5677888888  9999999999999999999999999999999987

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.80  E-value=2.6e-09  Score=66.72  Aligned_cols=42  Identities=26%  Similarity=0.440  Sum_probs=28.7

Q ss_pred             HcCCCCccccccccccccChHHHHHHHHHcCCCCCccccccc
Q psy11588        314 VHEKVRDHQCSVCGKAFADITNMKVHMRIHTGEKKYVCETCG  355 (459)
Q Consensus       314 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~  355 (459)
                      .|.++++|.|++|++.|.....|..|+++|+++++|.|+.||
T Consensus         4 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~cg   45 (45)
T 2epq_A            4 GSSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKSGPSSG   45 (45)
T ss_dssp             CCSSCCSSEETTTTEECSCHHHHHHHHHHHSCCCCCCCCCCC
T ss_pred             CcCCCCCCcCCCCCcccCCHHHHHHHHHHccCCCCCCCcCCC
Confidence            455666677777777777777777777777777777776664

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=98.80  E-value=1.2e-09  Score=65.04  Aligned_cols=36  Identities=31%  Similarity=0.483  Sum_probs=29.7

Q ss_pred             HHHHhCCCCCcccCccccccCChHHHHHHHHHhcCC
Q psy11588        423 HMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVHLKK  458 (459)
Q Consensus       423 H~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~  458 (459)
                      |+++|++++||+|+.|++.|.+...|..|+++|+++
T Consensus         2 H~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   37 (37)
T 1p7a_A            2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHMLV   37 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGGTCC
T ss_pred             CCCcCCCCCCccCCCCCcccCcHHHHHHHHHHhccC
Confidence            567788888888888888888888888888888764

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.80  E-value=2.3e-09  Score=68.08  Aligned_cols=42  Identities=29%  Similarity=0.612  Sum_probs=29.8

Q ss_pred             cCCCCccccccccccccChHHHHHHHHHcCCCCCcccccccc
Q psy11588        315 HEKVRDHQCSVCGKAFADITNMKVHMRIHTGEKKYVCETCGA  356 (459)
Q Consensus       315 h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~  356 (459)
                      |.++++|.|++|++.|.....|..|+++|+++++|.|++|++
T Consensus         7 ~~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C~k   48 (48)
T 2epr_A            7 GRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPSSG   48 (48)
T ss_dssp             CCCCCSEEETTTTEEESSHHHHHHHGGGSCSCCCCCSCCCCC
T ss_pred             CCCCcCeeCCCCCcccCCHHHHHHHHHhcCCCCCccCCCCCC
Confidence            455667777777777777777777777777777777777764

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.79  E-value=1.4e-09  Score=66.83  Aligned_cols=37  Identities=27%  Similarity=0.537  Sum_probs=34.4

Q ss_pred             HHHHhCCCCCcccCccccccCChHHHHHHHHHhcCCC
Q psy11588        423 HMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVHLKKD  459 (459)
Q Consensus       423 H~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~  459 (459)
                      |+++|.+++||.|++|++.|.+.+.|..|+++|.+++
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~   37 (42)
T 2yte_A            1 GSSGSSGEKPYSCAECKETFSDNNRLVQHQKMHTVKS   37 (42)
T ss_dssp             CCSSSCSCCSCBCTTTCCBCSSHHHHHHHHHHTSCCS
T ss_pred             CCcCcCCCCCeECCCCCCccCCHHHHHHHHHHhCCCC
Confidence            5678999999999999999999999999999999864

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.77  E-value=4.3e-09  Score=62.39  Aligned_cols=33  Identities=30%  Similarity=0.389  Sum_probs=25.6

Q ss_pred             hCCCCCcccCc--cccccCChHHHHHHHHHhcCCC
Q psy11588        427 HTTDRPFVCDM--CPSAFKLKKHLQQHYKVHLKKD  459 (459)
Q Consensus       427 H~~~~~~~C~~--C~~~f~~~~~l~~H~~~H~~~~  459 (459)
                      +++++||+|+.  |+++|.+++.|.+|+++|++++
T Consensus         4 ~~gekp~~C~~~~C~k~F~~~~~L~~H~r~Htg~~   38 (38)
T 2eln_A            4 GSSGILLKCPTDGCDYSTPDKYKLQAHLKVHTALD   38 (38)
T ss_dssp             SSCCCCEECSSSSCCCEESCHHHHHHHHHHHSCCC
T ss_pred             CCCCCCCCCCCCCCCCccCCHHHHHHHHHhcCCCC
Confidence            56778888875  8888888888888888887764

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.77  E-value=4.6e-09  Score=66.30  Aligned_cols=44  Identities=14%  Similarity=0.116  Sum_probs=41.0

Q ss_pred             ccccccCCCCCCcccccchhhccChhHHHHhhh-hhcCCCccccCCC
Q psy11588        170 VCIKHSNLIPKCHSCQKCEESFDNCNNLWSHMF-IKHENSDFVCNLC  215 (459)
Q Consensus       170 ~~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~-~~~~~~~~~C~~C  215 (459)
                      |++.|+++++  |.|++|++.|.....|..|++ +|.++++|.|++|
T Consensus         3 H~~~H~~~k~--~~C~~C~k~F~~~~~L~~H~~~~H~~~k~~~C~~C   47 (47)
T 2epx_A            3 SGSSGTGKKP--YECIECGKAFIQNTSLIRHWRYYHTGEKPSGPSSG   47 (47)
T ss_dssp             CCCCCCCCCS--BCCSSSCCCBSSHHHHHHHHTTTTTTSCSSSCCCC
T ss_pred             cccccCCCCC--EECCccCchhCChHHHHHHhHhhcCCCCCCCCCCC
Confidence            6778888888  999999999999999999999 9999999999987

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.76  E-value=3.9e-09  Score=66.31  Aligned_cols=44  Identities=18%  Similarity=0.271  Sum_probs=40.6

Q ss_pred             ccccccCCCCCCcccccchhhccChhHHHHhhhhhcCCCccccCCC
Q psy11588        170 VCIKHSNLIPKCHSCQKCEESFDNCNNLWSHMFIKHENSDFVCNLC  215 (459)
Q Consensus       170 ~~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C  215 (459)
                      |+++|+++++  |.|++|++.|.+...|..|+++|.+++||.|++|
T Consensus         3 H~~~H~~~k~--~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~   46 (46)
T 2ep3_A            3 SGSSGTGEKP--YRCAECGKAFTDRSNLFTHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSSSCCCS--EECSSSCCEESSHHHHHHHHTTTTTSCCCCTTCC
T ss_pred             CCCCCCCCCC--eECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            6677888888  9999999999999999999999999999999875

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.74  E-value=5.7e-09  Score=65.52  Aligned_cols=44  Identities=20%  Similarity=0.229  Sum_probs=40.6

Q ss_pred             ccccccCCCCCCcccccchhhccChhHHHHhhhhhcCCCccccCCC
Q psy11588        170 VCIKHSNLIPKCHSCQKCEESFDNCNNLWSHMFIKHENSDFVCNLC  215 (459)
Q Consensus       170 ~~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C  215 (459)
                      |+.+|+++++  |.|++|++.|.....|..|+++|.++++|.|++|
T Consensus         3 H~~~H~~~k~--~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~~   46 (46)
T 2em2_A            3 SGSSGSGEKP--FKCKECGKAFRQNIHLASHLRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSCCCCCS--EECSSSCCEESSHHHHHHHHHHHCCCCSSCSSCC
T ss_pred             CCCCCCCCCC--EECCcCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            6677888888  9999999999999999999999999999999875

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=98.74  E-value=4.7e-09  Score=63.23  Aligned_cols=37  Identities=30%  Similarity=0.506  Sum_probs=32.3

Q ss_pred             cCCCCccccccchhccCChHHHHHHHHHhCCCCCccc
Q psy11588        399 HTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVC  435 (459)
Q Consensus       399 H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C  435 (459)
                      |++++||.|++||+.|...+.|..|+++|++++||.+
T Consensus         1 h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~~   37 (39)
T 1njq_A            1 XWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRARLR   37 (39)
T ss_dssp             -CCSSSEECTTTCCEESSHHHHHHHHHTTCCSCTTTT
T ss_pred             CCCCCceECCCCCcccCCHHHHHHHHHHcCCCcccee
Confidence            5678899999999999999999999999999998875

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.73  E-value=2.1e-09  Score=66.85  Aligned_cols=38  Identities=24%  Similarity=0.445  Sum_probs=35.3

Q ss_pred             HHHHHhCCCCCcccCccccccCChHHHHHHHHHhcCCC
Q psy11588        422 EHMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVHLKKD  459 (459)
Q Consensus       422 ~H~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~  459 (459)
                      .|+++|++++||.|++|++.|.+.+.|..|+++|++++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k   39 (44)
T 2epv_A            2 SSGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVS   39 (44)
T ss_dssp             CCCCCCCCCCSEECSSSCCEESSHHHHHHHHGGGSSCS
T ss_pred             CCCcccCCCcCeECCCCCcccCchHHHHHHHhHhcCCC
Confidence            37789999999999999999999999999999999864

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.73  E-value=2.3e-09  Score=66.64  Aligned_cols=38  Identities=26%  Similarity=0.537  Sum_probs=35.3

Q ss_pred             HHHHHhCCCCCcccCccccccCChHHHHHHHHHhcCCC
Q psy11588        422 EHMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVHLKKD  459 (459)
Q Consensus       422 ~H~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~  459 (459)
                      .|+++|++++||.|++|++.|.+...|..|+++|++++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~   39 (44)
T 2yu5_A            2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKS   39 (44)
T ss_dssp             CCSCCCSCCCSEECSSSSCEESSSHHHHHHHHHCCCCC
T ss_pred             CCccccCCCCCeECCCCCchhCCHHHHHHHhHhcCCCC
Confidence            47889999999999999999999999999999999864

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.73  E-value=6.1e-09  Score=65.39  Aligned_cols=44  Identities=18%  Similarity=0.155  Sum_probs=40.1

Q ss_pred             ccccccCCCCCCcccccchhhccChhHHHHhhhhhcCCCccccCCC
Q psy11588        170 VCIKHSNLIPKCHSCQKCEESFDNCNNLWSHMFIKHENSDFVCNLC  215 (459)
Q Consensus       170 ~~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C  215 (459)
                      .+..|+++++  |.|++|++.|.+...|..|+++|.++++|.|++|
T Consensus         3 ~~~~h~~~~~--~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ep0_A            3 SGSSGTGEKP--YKCDVCHKSFRYGSSLTVHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSTTCCS--EECSSSCCEESSHHHHHHHHTTTSSSCCCSCCCC
T ss_pred             CCCCCCCCCC--eeCcccCcccCChHHHHHHHHHhCCCCCCCCCCC
Confidence            3456778888  9999999999999999999999999999999987

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.73  E-value=5.3e-09  Score=65.66  Aligned_cols=44  Identities=16%  Similarity=0.182  Sum_probs=39.9

Q ss_pred             ccccccCCCCCCcccccchhhccChhHHHHhhhhhcCCCccccCCC
Q psy11588        170 VCIKHSNLIPKCHSCQKCEESFDNCNNLWSHMFIKHENSDFVCNLC  215 (459)
Q Consensus       170 ~~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C  215 (459)
                      .+.+|+++++  |.|++|++.|.+...|..|+++|+++++|.|++|
T Consensus         3 ~~~~h~~~k~--~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytt_A            3 SGSSGEGEKP--YQCSECGKSFSGSYRLTQHWITHTREKPSGPSSG   46 (46)
T ss_dssp             CSSSCSCCCT--TCCSSSCCCCSSHHHHHHHHTHHHHCCCCSCCCC
T ss_pred             CCCCCCCCCC--eeCCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            3456777777  9999999999999999999999999999999987

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.71  E-value=4.4e-09  Score=62.50  Aligned_cols=33  Identities=18%  Similarity=0.536  Sum_probs=17.8

Q ss_pred             HhCCCCCcccCccccccCChHHHHHHHHHhcCC
Q psy11588        426 VHTTDRPFVCDMCPSAFKLKKHLQQHYKVHLKK  458 (459)
Q Consensus       426 ~H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~  458 (459)
                      +|++++||.|++|++.|.+...|..|+++|+++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~h~~~   35 (37)
T 2elo_A            3 SGSSGRSYSCPVCEKSFSEDRLIKSHIKTNHPE   35 (37)
T ss_dssp             CCCCCCCCEETTTTEECSSHHHHHHHHHHHCSS
T ss_pred             CCCCCCCcCCCCCCCccCCHHHHHHHHHHHcCC
Confidence            345555555555555555555555555555544

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=98.69  E-value=5.9e-10  Score=75.17  Aligned_cols=47  Identities=17%  Similarity=0.376  Sum_probs=26.2

Q ss_pred             HcCCCCccccccccccccChHHHHHHHHHcCCCCCcccccccccccccch
Q psy11588        314 VHEKVRDHQCSVCGKAFADITNMKVHMRIHTGEKKYVCETCGASFVQWGS  363 (459)
Q Consensus       314 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~  363 (459)
                      .|.++++|.|+.||+.|.....|.   ++|.++++|.|+.|++.|....+
T Consensus         8 ~H~~~k~~~C~~C~k~F~~~~~l~---~~H~~~k~~~C~~C~k~f~~~~~   54 (62)
T 1vd4_A            8 DSTNRASFKCPVCSSTFTDLEANQ---LFDPMTGTFRCTFCHTEVEEDES   54 (62)
T ss_dssp             SCCSSSEEECSSSCCEEEHHHHHH---HEETTTTEEBCSSSCCBCEECTT
T ss_pred             HcCCCCCccCCCCCchhccHHHhH---hhcCCCCCEECCCCCCccccCcc
Confidence            355555555555555555555544   45555556666666665555443

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=98.67  E-value=1.2e-08  Score=62.52  Aligned_cols=42  Identities=21%  Similarity=0.282  Sum_probs=37.2

Q ss_pred             ccccccCCCCCCcccccchhhccChhHHHHhhhhhcCCCccccC
Q psy11588        170 VCIKHSNLIPKCHSCQKCEESFDNCNNLWSHMFIKHENSDFVCN  213 (459)
Q Consensus       170 ~~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~  213 (459)
                      |+++|+++++  |.|++|++.|.+...|..|+++|.++++|.|+
T Consensus         1 H~~~H~~~k~--~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   42 (42)
T 2el5_A            1 GSSGSSGENP--YECSECGKAFNRKDQLISHQRTHAGESGPSSG   42 (42)
T ss_dssp             CCSSSSSCCS--EECSSSCCEESSHHHHHHHHGGGCCCCSCCCC
T ss_pred             CCCCCCCCCC--ccCCCcChhhCCHHHHHHHHHhcCCCCCCCCC
Confidence            3456778777  99999999999999999999999999999885

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.66  E-value=1.3e-08  Score=63.84  Aligned_cols=43  Identities=14%  Similarity=0.151  Sum_probs=39.4

Q ss_pred             ccccccCCCCCCcccccchhhccChhHHHHhhhhhcCCCccccCC
Q psy11588        170 VCIKHSNLIPKCHSCQKCEESFDNCNNLWSHMFIKHENSDFVCNL  214 (459)
Q Consensus       170 ~~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~  214 (459)
                      |+.+|+++++  |.|++|++.|.....|..|+++|.++++|.|++
T Consensus         3 H~~~H~~~k~--~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2em4_A            3 SGSSGTGQRP--YECIECGKAFKTKSSLICHRRSHTGEKPSGPSS   45 (46)
T ss_dssp             SCCCCCCSSS--EECSSSCCEESSHHHHHHHHHHHSSSSCCCCCC
T ss_pred             CccccCCCcC--cCCCCCCCccCCHHHHHHHHHhcCCCCCCCCCC
Confidence            6778888888  999999999999999999999999999999974

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.66  E-value=1.6e-08  Score=63.36  Aligned_cols=43  Identities=14%  Similarity=0.197  Sum_probs=39.2

Q ss_pred             ccccccCCCCCCcccccchhhccChhHHHHhhhhhcCCCccccCC
Q psy11588        170 VCIKHSNLIPKCHSCQKCEESFDNCNNLWSHMFIKHENSDFVCNL  214 (459)
Q Consensus       170 ~~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~  214 (459)
                      |+++|+++++  |.|++|++.|.+...|..|+++|.++++|.|+.
T Consensus         3 H~~~H~~~k~--~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eq2_A            3 SGSSGTGGKP--YQCNECGKAFSQTSKLARHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSSSSSCS--SSCCSSCCCCSSHHHHHHHGGGGCCCCCCCCCC
T ss_pred             cccccCCCCC--eECCCCCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            6677888888  999999999999999999999999999999874

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.66  E-value=1.4e-08  Score=63.69  Aligned_cols=43  Identities=16%  Similarity=0.176  Sum_probs=39.2

Q ss_pred             ccccccCCCCCCcccccchhhccChhHHHHhhhhhcCCCccccCC
Q psy11588        170 VCIKHSNLIPKCHSCQKCEESFDNCNNLWSHMFIKHENSDFVCNL  214 (459)
Q Consensus       170 ~~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~  214 (459)
                      |+++|+++++  |.|++|++.|.....|..|+++|.+++||.|++
T Consensus         3 H~~~H~~~k~--~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2enf_A            3 SGSSGTGEKP--YKCNECGKVFTQNSHLVRHRGIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCCS--CBCSSSCCBCSSHHHHHHHHTTTTTSSCCCCSC
T ss_pred             CCcCCCCCcC--eECCCCCcccCCHHHHHHHHHhhCCCCCCCCCC
Confidence            6677888888  999999999999999999999999999999874

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.66  E-value=1.7e-08  Score=63.31  Aligned_cols=43  Identities=19%  Similarity=0.186  Sum_probs=39.2

Q ss_pred             ccccccCCCCCCcccccchhhccChhHHHHhhhhhcCCCccccCC
Q psy11588        170 VCIKHSNLIPKCHSCQKCEESFDNCNNLWSHMFIKHENSDFVCNL  214 (459)
Q Consensus       170 ~~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~  214 (459)
                      |+.+|+++++  |.|++|++.|.+...|..|+++|.++++|.|++
T Consensus         3 H~~~H~~~k~--~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ep1_A            3 SGSSGTGEKP--YECSDCGKSFIKKSQLHVHQRIHTGENPSGPSS   45 (46)
T ss_dssp             CCCCCSSCCS--SCCSSSCCCCSSHHHHHHHHGGGSSSCCCSSSC
T ss_pred             cccCCCCCCC--cCCCCCCchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            6677888888  999999999999999999999999999999974

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=98.66  E-value=1.3e-08  Score=63.84  Aligned_cols=43  Identities=19%  Similarity=0.224  Sum_probs=39.3

Q ss_pred             ccccccCCCCCCcccccchhhccChhHHHHhhhhhcCCCccccCC
Q psy11588        170 VCIKHSNLIPKCHSCQKCEESFDNCNNLWSHMFIKHENSDFVCNL  214 (459)
Q Consensus       170 ~~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~  214 (459)
                      |+++|+++++  |.|++|++.|.+...|..|+++|.++++|.|++
T Consensus         3 H~~~H~~~k~--~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emj_A            3 SGSSGTGEKP--FECAECGKSFSISSQLATHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCCS--EECSSSSCEESSHHHHHHHHHHHTTSCSSSSCC
T ss_pred             CCCCCCCCCC--EECCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            6677888888  999999999999999999999999999999974

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.65  E-value=1.5e-08  Score=63.53  Aligned_cols=43  Identities=16%  Similarity=0.191  Sum_probs=39.2

Q ss_pred             ccccccCCCCCCcccccchhhccChhHHHHhhhhhcCCCccccCC
Q psy11588        170 VCIKHSNLIPKCHSCQKCEESFDNCNNLWSHMFIKHENSDFVCNL  214 (459)
Q Consensus       170 ~~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~  214 (459)
                      ++++|+++++  |.|++|++.|.+...|..|+++|.++++|.|++
T Consensus         3 h~~~H~~~k~--~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eon_A            3 SGSSGTGEKP--YKCQVCGKAFRVSSHLVQHHSVHSGERPSGPSS   45 (46)
T ss_dssp             CSSSCSSCCS--CBCSSSCCBCSSHHHHHHHTTTTTSCCSCTTSC
T ss_pred             CCCCCCCCcc--cCCCCCCcccCcHHHHHHHHHhcCCCCCCCCCC
Confidence            5677888888  999999999999999999999999999999974

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.65  E-value=1.5e-08  Score=63.51  Aligned_cols=43  Identities=19%  Similarity=0.193  Sum_probs=39.1

Q ss_pred             ccccccCCCCCCcccccchhhccChhHHHHhhhhhcCCCccccCC
Q psy11588        170 VCIKHSNLIPKCHSCQKCEESFDNCNNLWSHMFIKHENSDFVCNL  214 (459)
Q Consensus       170 ~~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~  214 (459)
                      |+..|+++++  |.|++|++.|.+...|..|+++|.++++|.|++
T Consensus         3 H~~~H~~~k~--~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2emg_A            3 SGSSGTGENP--FICSECGKVFTHKTNLIIHQKIHTGERPSGPSS   45 (46)
T ss_dssp             CCCCCCSCCS--CBCTTTCCBCSSHHHHHHHHTTTSCCCCSCSCC
T ss_pred             CCCCCCCCCC--EECCccCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            6677888888  999999999999999999999999999999874

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.65  E-value=1.3e-08  Score=59.44  Aligned_cols=32  Identities=19%  Similarity=0.402  Sum_probs=17.1

Q ss_pred             hCCCCCcccCccccccCChHHHHHHHHHhcCC
Q psy11588        427 HTTDRPFVCDMCPSAFKLKKHLQQHYKVHLKK  458 (459)
Q Consensus       427 H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~  458 (459)
                      |++++||.|++|++.|.+.+.|..|+++|+++
T Consensus         2 h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~   33 (35)
T 2elx_A            2 SSGSSGYVCALCLKKFVSSIRLRSHIREVHGA   33 (35)
T ss_dssp             CCCCCSEECSSSCCEESSHHHHHHHHHHTSCT
T ss_pred             CCCCCCeECCCCcchhCCHHHHHHHHHHHcCC
Confidence            44555555555555555555555555555543

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.65  E-value=1.5e-08  Score=63.55  Aligned_cols=43  Identities=14%  Similarity=0.147  Sum_probs=39.2

Q ss_pred             ccccccCCCCCCcccccchhhccChhHHHHhhhhhcCCCccccCC
Q psy11588        170 VCIKHSNLIPKCHSCQKCEESFDNCNNLWSHMFIKHENSDFVCNL  214 (459)
Q Consensus       170 ~~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~  214 (459)
                      |++.|+++.+  |.|++|++.|.+...|..|+++|.++++|.|++
T Consensus         3 H~~~H~~~~~--~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2em3_A            3 SGSSGTGEKP--YECKVCSKAFTQKAHLAQHQKTHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCSSCCS--EECSSSCCEESSHHHHHHHHHHHCCCCCCCSCC
T ss_pred             CCCCCCCCcC--eECCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            6677888888  999999999999999999999999999999974

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.65  E-value=1.8e-08  Score=63.14  Aligned_cols=43  Identities=14%  Similarity=0.172  Sum_probs=39.1

Q ss_pred             ccccccCCCCCCcccccchhhccChhHHHHhhhhhcCCCccccCC
Q psy11588        170 VCIKHSNLIPKCHSCQKCEESFDNCNNLWSHMFIKHENSDFVCNL  214 (459)
Q Consensus       170 ~~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~  214 (459)
                      |+.+|+++++  |.|++|++.|.+...|..|+++|.++++|.|++
T Consensus         3 h~~~H~~~k~--~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2en9_A            3 SGSSGAGKKL--FKCNECKKTFTQSSSLTVHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCSSCCSSCC--CBCTTTCCBCSSHHHHHHHHHHHTSSCCCSCCC
T ss_pred             CCCCCCCCCC--EECCccCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            6677888888  999999999999999999999999999999874

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.64  E-value=1.9e-08  Score=63.02  Aligned_cols=43  Identities=19%  Similarity=0.258  Sum_probs=39.0

Q ss_pred             ccccccCCCCCCcccccchhhccChhHHHHhhhhhcCCCccccCC
Q psy11588        170 VCIKHSNLIPKCHSCQKCEESFDNCNNLWSHMFIKHENSDFVCNL  214 (459)
Q Consensus       170 ~~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~  214 (459)
                      |+..|+++.+  |.|++|++.|.+...|..|+++|.++++|.|+.
T Consensus         3 H~~~H~~~k~--~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yth_A            3 SGSSGSGEKP--FQCEECGKRFTQNSHLHSHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             CCSCCCCSSS--BCCSSSCCCBSSHHHHHHHGGGGTTCCCSSCCC
T ss_pred             cccCCCCCcC--CCCCCCCcccCCHHHHHHHHHhcCCCCCCCCCC
Confidence            6677888888  999999999999999999999999999999874

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.64  E-value=1.5e-08  Score=63.47  Aligned_cols=43  Identities=16%  Similarity=0.168  Sum_probs=39.0

Q ss_pred             ccccccCCCCCCcccccchhhccChhHHHHhhhhhcCCCccccCC
Q psy11588        170 VCIKHSNLIPKCHSCQKCEESFDNCNNLWSHMFIKHENSDFVCNL  214 (459)
Q Consensus       170 ~~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~  214 (459)
                      |+.+|+++++  |.|++|++.|.....|..|+++|.+++||.|++
T Consensus         3 H~~~H~~~k~--~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yti_A            3 SGSSGTGEKP--YKCNECGKVFTQNSHLARHRGIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCSCCCT--TCCSSSCCCCSSHHHHHHHHTTTSCSCCSSTTC
T ss_pred             CCcCCCCCcC--eECCCCCcccCChhHHHHHhHhcCCCCCCCCCC
Confidence            6677888888  999999999999999999999999999999874

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.64  E-value=1.5e-08  Score=63.58  Aligned_cols=43  Identities=14%  Similarity=0.118  Sum_probs=39.3

Q ss_pred             ccccccCCCCCCcccccchhhccChhHHHHhhhhhcCCCccccCC
Q psy11588        170 VCIKHSNLIPKCHSCQKCEESFDNCNNLWSHMFIKHENSDFVCNL  214 (459)
Q Consensus       170 ~~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~  214 (459)
                      |+.+|+++++  |.|++|++.|.+...|..|+++|.++++|.|+.
T Consensus         3 H~~~H~~~k~--~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ytp_A            3 SGSSGTGERH--YECSECGKAFARKSTLIMHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSSCCCCC--EECSSSCCEESSHHHHHHHHTTTSCCCCCSSCC
T ss_pred             cccCcCCCCC--eECCcCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            6677888888  999999999999999999999999999999974

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.64  E-value=1.8e-08  Score=63.16  Aligned_cols=43  Identities=14%  Similarity=0.090  Sum_probs=39.2

Q ss_pred             ccccccCCCCCCcccccchhhccChhHHHHhhhhhcCCCccccCC
Q psy11588        170 VCIKHSNLIPKCHSCQKCEESFDNCNNLWSHMFIKHENSDFVCNL  214 (459)
Q Consensus       170 ~~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~  214 (459)
                      |++.|+++++  |.|++|++.|.+...|..|+++|.++++|.|+.
T Consensus         3 H~~~H~~~~~--~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emi_A            3 SGSSGTGERH--YECSECGKAFIQKSTLSMHQRIHRGEKPSGPSS   45 (46)
T ss_dssp             CCCSCSSCCC--EECSSSCCEESSHHHHHHHHGGGCSCCCCSCCC
T ss_pred             CCcccCCCCC--CCCCCCCcccCCHHHHHHHHhHhCCCCCCCCCC
Confidence            6777888888  999999999999999999999999999999864

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.64  E-value=1.5e-08  Score=63.51  Aligned_cols=43  Identities=14%  Similarity=0.149  Sum_probs=39.1

Q ss_pred             ccccccCCCCCCcccccchhhccChhHHHHhhhhhcCCCccccCC
Q psy11588        170 VCIKHSNLIPKCHSCQKCEESFDNCNNLWSHMFIKHENSDFVCNL  214 (459)
Q Consensus       170 ~~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~  214 (459)
                      |+++|+++++  |.|++|++.|.+...|..|+++|.++++|.|++
T Consensus         3 H~~~H~~~k~--~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eow_A            3 SGSSGTGEKP--YKCNECGKAFRARSSLAIHQATHSGEKPSGPSS   45 (46)
T ss_dssp             CCCCSCCCCC--EECTTSCCEESSHHHHHHHHHHHCCCSCSCTTC
T ss_pred             ccCCCCCCCC--eeccccCChhcCHHHHHHHHHHcCCCCCCCCCC
Confidence            6677888888  999999999999999999999999999999974

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.63  E-value=1.5e-08  Score=63.46  Aligned_cols=43  Identities=16%  Similarity=0.237  Sum_probs=39.1

Q ss_pred             ccccccCCCCCCcccccchhhccChhHHHHhhhhhcCCCccccCC
Q psy11588        170 VCIKHSNLIPKCHSCQKCEESFDNCNNLWSHMFIKHENSDFVCNL  214 (459)
Q Consensus       170 ~~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~  214 (459)
                      |+..|+++++  |.|++|++.|.+...|..|+++|.++++|.|++
T Consensus         3 H~~~H~~~k~--~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ytf_A            3 SGSSGTGEKP--FECSECQKAFNTKSNLIVHQRTHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSSCCCCS--EECSSSCCEESSHHHHHHHHHTSCSSSSSCCCC
T ss_pred             CCCCCCCCCC--cCCCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            6677888888  999999999999999999999999999999874

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.63  E-value=1.8e-08  Score=63.15  Aligned_cols=43  Identities=19%  Similarity=0.156  Sum_probs=39.2

Q ss_pred             ccccccCCCCCCcccccchhhccChhHHHHhhhhhcCCCccccCC
Q psy11588        170 VCIKHSNLIPKCHSCQKCEESFDNCNNLWSHMFIKHENSDFVCNL  214 (459)
Q Consensus       170 ~~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~  214 (459)
                      |+++|++.++  |.|++|++.|.....|..|+++|.+++||.|++
T Consensus         3 H~~~H~~~k~--~~C~~C~k~f~~~~~L~~H~~~H~~~~p~~C~~   45 (46)
T 2yts_A            3 SGSSGTGEKP--YICNECGKSFIQKSHLNRHRRIHTGEKPSGPSS   45 (46)
T ss_dssp             CSCCCCSCCS--EECSSSCCEESSHHHHHHHGGGTSSCCSSCCCC
T ss_pred             CCCCCCCCcC--EECCCCChhhCChHHHHHHHHhcCCCCCcCCCC
Confidence            6677888888  999999999999999999999999999999874

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.63  E-value=1.6e-08  Score=62.71  Aligned_cols=42  Identities=19%  Similarity=0.223  Sum_probs=38.7

Q ss_pred             ccccccCCCCCCcccccchhhccChhHHHHhhhhhcCCCccccC
Q psy11588        170 VCIKHSNLIPKCHSCQKCEESFDNCNNLWSHMFIKHENSDFVCN  213 (459)
Q Consensus       170 ~~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~  213 (459)
                      |+++|+++++  |.|++|++.|.....|..|+++|.++++|.|+
T Consensus         3 H~~~H~~~k~--~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eoj_A            3 SGSSGTGENP--YECCECGKVFSRKDQLVSHQKTHSGQSGPSSG   44 (44)
T ss_dssp             SCCSSSSCCS--CEETTTTEECSSHHHHHHHHTTSSSSCSCCCC
T ss_pred             CccccCCCcC--eeCCCCCCccCCHHHHHHHHHHcCCCCCCCCC
Confidence            6778888888  99999999999999999999999999999985

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.63  E-value=1.9e-08  Score=63.01  Aligned_cols=43  Identities=19%  Similarity=0.258  Sum_probs=39.0

Q ss_pred             ccccccCCCCCCcccccchhhccChhHHHHhhhhhcCCCccccCC
Q psy11588        170 VCIKHSNLIPKCHSCQKCEESFDNCNNLWSHMFIKHENSDFVCNL  214 (459)
Q Consensus       170 ~~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~  214 (459)
                      |+++|+++++  |.|++|++.|.....|..|+++|.++++|.|+.
T Consensus         3 H~~~H~~~k~--~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eq1_A            3 SGSSGTGEKP--YKCNECGKAFRAHSNLTTHQVIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCSCC--CCCTTTTCCCSSHHHHHHHHTTTCCSCCSSCCC
T ss_pred             cccccCCCCC--eECCcCChhhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            6677888888  999999999999999999999999999999864

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.63  E-value=1.6e-08  Score=63.38  Aligned_cols=43  Identities=16%  Similarity=0.189  Sum_probs=39.1

Q ss_pred             ccccccCCCCCCcccccchhhccChhHHHHhhhhhcCCCccccCC
Q psy11588        170 VCIKHSNLIPKCHSCQKCEESFDNCNNLWSHMFIKHENSDFVCNL  214 (459)
Q Consensus       170 ~~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~  214 (459)
                      |++.|+++++  |.|++|++.|.+...|..|+++|.+++||.|++
T Consensus         3 H~~~H~~~~~--~~C~~C~k~f~~~~~L~~H~~~H~~~kp~~C~~   45 (46)
T 2eor_A            3 SGSSGTGEKP--YNCEECGKAFIHDSQLQEHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             SSSSSSCCCS--EECTTTCCEESSHHHHHHHHHHHHSCCCSSSTT
T ss_pred             CCcCcCCCcC--ccCCCCCCCcCCHHHHHHHHHhcCCCCCCCCCC
Confidence            6677888888  999999999999999999999999999999974

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=98.63  E-value=1.7e-08  Score=61.81  Aligned_cols=41  Identities=17%  Similarity=0.173  Sum_probs=37.5

Q ss_pred             ccccccCCCCCCcccccchhhccChhHHHHhhhhhcCCCcccc
Q psy11588        170 VCIKHSNLIPKCHSCQKCEESFDNCNNLWSHMFIKHENSDFVC  212 (459)
Q Consensus       170 ~~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C  212 (459)
                      |+.+|+++++  |.|++|++.|.+...|..|+++|.+++||.|
T Consensus         2 H~~~H~~~~~--~~C~~C~k~f~~~~~l~~H~~~H~~~k~~~C   42 (42)
T 2epc_A            2 SSGSSGGETP--YLCGQCGKSFTQRGSLAVHQRSCSQSGPSSG   42 (42)
T ss_dssp             CCSCCCSSCC--EECSSSCCEESSHHHHHHHHHHTTCCCCCCC
T ss_pred             CCccCCCCCC--eECCCCCcccCCHHHHHHHhhhcCCCCCCCC
Confidence            5677888888  9999999999999999999999999999987

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.62  E-value=2e-08  Score=62.95  Aligned_cols=43  Identities=12%  Similarity=0.104  Sum_probs=39.0

Q ss_pred             ccccccCCCCCCcccccchhhccChhHHHHhhhhhcCCCccccCC
Q psy11588        170 VCIKHSNLIPKCHSCQKCEESFDNCNNLWSHMFIKHENSDFVCNL  214 (459)
Q Consensus       170 ~~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~  214 (459)
                      |++.|+++++  |.|++|++.|.....|..|+++|.+++||.|+.
T Consensus         3 H~~~H~~~k~--~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2em6_A            3 SGSSGMGEKC--YKCDVCGKEFSQSSHLQTHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             CCSCCCCCCC--CBCSSSCCBCSSHHHHHHHHTTTSSSCCCCTTC
T ss_pred             CccccCCCCC--eECCCCCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            6677888888  999999999999999999999999999999874

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=98.62  E-value=2.1e-08  Score=57.76  Aligned_cols=32  Identities=25%  Similarity=0.364  Sum_probs=26.9

Q ss_pred             CccccccchhccCChHHHHHHHHHhCCCCCcc
Q psy11588        403 QKSICDVCGKEFKMKKRLKEHMAVHTTDRPFV  434 (459)
Q Consensus       403 ~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~  434 (459)
                      +||.|++||+.|...+.|..|+++|++++||.
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~   32 (33)
T 1rim_A            1 YKFACPECPKRFMRSDHLSKHITLHELLGEER   32 (33)
T ss_dssp             CCCCCSSSCCCCSSHHHHHHHHHHHTTTCCCC
T ss_pred             CcccCCCCCchhCCHHHHHHHHHHhCCCCCCC
Confidence            46888888888888888888888888888875

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.62  E-value=2.3e-08  Score=66.36  Aligned_cols=40  Identities=25%  Similarity=0.337  Sum_probs=35.5

Q ss_pred             hcCCCCcccccc--chhccCChHHHHHHH-HHhCCCCCcccCc
Q psy11588        398 AHTIRQKSICDV--CGKEFKMKKRLKEHM-AVHTTDRPFVCDM  437 (459)
Q Consensus       398 ~H~~~~~~~C~~--C~~~f~~~~~l~~H~-~~H~~~~~~~C~~  437 (459)
                      ..++++||+|+.  |+++|...+.|..|+ ++|++++||.|..
T Consensus        21 ~~sGEKPYkC~~~~CgKaFsr~s~L~~H~rriHTgEKP~~~~~   63 (73)
T 1x3c_A           21 RYSPYRPYRCVHQGCFAAFTIQQNLILHYQAVHKSDLPAFSAE   63 (73)
T ss_dssp             SSCSSCSCBCCSTTCCCBCSSHHHHHHHHHHHSSSCCCCCCCS
T ss_pred             cccCCCCeECCCCCcChhHcCHHHHHHHhhhhCCCCCCccccc
Confidence            457889999975  999999999999998 6899999999864

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=98.62  E-value=1.7e-08  Score=59.00  Aligned_cols=32  Identities=44%  Similarity=0.816  Sum_probs=18.0

Q ss_pred             hCCCCCcccCccccccCChHHHHHHHHHhcCC
Q psy11588        427 HTTDRPFVCDMCPSAFKLKKHLQQHYKVHLKK  458 (459)
Q Consensus       427 H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~  458 (459)
                      |++++||.|++|++.|.+.+.|..|+++|+++
T Consensus         2 H~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   33 (35)
T 1srk_A            2 SSGKRPFVCRICLSAFTTKANCARHLKVHTDT   33 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGGGTSC
T ss_pred             CCCCcCeeCCCCCcccCCHHHHHHHHHHcCCC
Confidence            44555555555555555555555555555544

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.62  E-value=1.9e-08  Score=61.65  Aligned_cols=41  Identities=20%  Similarity=0.261  Sum_probs=37.3

Q ss_pred             ccccccCCCCCCcccccchhhccChhHHHHhhhhhcCCCcccc
Q psy11588        170 VCIKHSNLIPKCHSCQKCEESFDNCNNLWSHMFIKHENSDFVC  212 (459)
Q Consensus       170 ~~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C  212 (459)
                      |+++|+++++  |.|++|++.|.+...|..|+++|.++++|.|
T Consensus         2 H~~~H~~~k~--~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2eos_A            2 SSGSSGGEKP--YPCEICGTRFRHLQTLKSHLRIHTGSGPSSG   42 (42)
T ss_dssp             CCSCCSSSCC--BCCSSSCCCBSSHHHHHHHTTTTSCCSSTTC
T ss_pred             CCcccCCCCC--EECCCCCCccCCHHHHHHHHHhcCCCCCCCC
Confidence            5667888888  9999999999999999999999999999987

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.62  E-value=2.2e-08  Score=62.70  Aligned_cols=42  Identities=17%  Similarity=0.229  Sum_probs=38.4

Q ss_pred             ccccccCCCCCCcccccchhhccChhHHHHhhhhhcCCCccccC
Q psy11588        170 VCIKHSNLIPKCHSCQKCEESFDNCNNLWSHMFIKHENSDFVCN  213 (459)
Q Consensus       170 ~~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~  213 (459)
                      |+++|+++++  |.|++|++.|.....|..|+++|.++++|.|+
T Consensus         3 H~~~H~~~k~--~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eoh_A            3 SGSSGSGKKP--YECKECRKTFIQIGHLNQHKRVHTGERSSGPS   44 (46)
T ss_dssp             CCCSCCCSCS--CCCSSSCCCCSSHHHHHHHHHHCSSCCSCSTT
T ss_pred             CCCCcCCCCC--cCCCCcCchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            6677888888  99999999999999999999999999999986

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.61  E-value=2e-08  Score=61.50  Aligned_cols=41  Identities=15%  Similarity=0.271  Sum_probs=37.5

Q ss_pred             ccccccCCCCCCcccccchhhccChhHHHHhhhhhcCCCcccc
Q psy11588        170 VCIKHSNLIPKCHSCQKCEESFDNCNNLWSHMFIKHENSDFVC  212 (459)
Q Consensus       170 ~~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C  212 (459)
                      |+++|+++++  |.|++|++.|.+...|..|+++|.++++|.|
T Consensus         2 H~~~H~~~k~--~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2ytb_A            2 SSGSSGGEKP--YRCDQCGKAFSQKGSLIVHIRVHTGSGPSSG   42 (42)
T ss_dssp             CCCCCCSCCS--BCCTTTTCCBSSHHHHHTTGGGTSCCSCCCC
T ss_pred             CccccCCCCC--eeCCCccchhCCHHHHHHHHHHhCCCCCCCC
Confidence            5667888888  9999999999999999999999999999987

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.61  E-value=2.1e-08  Score=62.18  Aligned_cols=42  Identities=17%  Similarity=0.256  Sum_probs=38.2

Q ss_pred             ccccccCCCCCCcccccchhhccChhHHHHhhhhhcCCCccccC
Q psy11588        170 VCIKHSNLIPKCHSCQKCEESFDNCNNLWSHMFIKHENSDFVCN  213 (459)
Q Consensus       170 ~~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~  213 (459)
                      |+++|+++++  |.|++|++.|.+...|..|+++|.++++|.|+
T Consensus         3 H~~~H~~~k~--~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2en7_A            3 SGSSGTGMKP--YVCNECGKAFRSKSYLIIHTRTHTGESGPSSG   44 (44)
T ss_dssp             SCCCSSSSSS--SCCTTTCCCCSSHHHHHHHHTTTCCSSSSCCC
T ss_pred             CCcCCCCCcC--eECCCCCCccCCHHHHHHHhhhcCCCCCCCCC
Confidence            6677888888  99999999999999999999999999999885

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.61  E-value=2e-08  Score=62.97  Aligned_cols=43  Identities=19%  Similarity=0.194  Sum_probs=39.1

Q ss_pred             ccccccCCCCCCcccccchhhccChhHHHHhhhhhcCCCccccCC
Q psy11588        170 VCIKHSNLIPKCHSCQKCEESFDNCNNLWSHMFIKHENSDFVCNL  214 (459)
Q Consensus       170 ~~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~  214 (459)
                      |+.+|+++++  |.|++|++.|.....|..|+++|.++++|.|+.
T Consensus         3 H~~~H~~~~~--~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yrj_A            3 SGSSGTGEKP--YRCGECGKAFAQKANLTQHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCCC--EECSSSCCEESSHHHHHHHHTTTSSCCSSCSCC
T ss_pred             CccCCCCCCC--eECCCCCCccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            6677888888  999999999999999999999999999999874

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.61  E-value=1.5e-08  Score=60.08  Aligned_cols=34  Identities=24%  Similarity=0.372  Sum_probs=26.3

Q ss_pred             HhCCCCCcccCccccccCCh-HHHHHHHHHhcCCC
Q psy11588        426 VHTTDRPFVCDMCPSAFKLK-KHLQQHYKVHLKKD  459 (459)
Q Consensus       426 ~H~~~~~~~C~~C~~~f~~~-~~l~~H~~~H~~~~  459 (459)
                      +|++++||.|++|++.|.+. +.|..|+++|.+++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~~L~~H~~~H~~~k   37 (37)
T 2elp_A            3 SGSSGRAMKCPYCDFYFMKNGSDLQRHIWAHEGVK   37 (37)
T ss_dssp             SCCCCCCEECSSSSCEECSSCHHHHHHHHHHHTCC
T ss_pred             CCCCCCCeECCCCChhhccCHHHHHHHHHhcCCCC
Confidence            56777888888888888887 78888888887764

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.61  E-value=2.1e-08  Score=62.88  Aligned_cols=43  Identities=16%  Similarity=0.183  Sum_probs=39.3

Q ss_pred             ccccccCCCCCCcccccchhhccChhHHHHhhhhhcCCCccccCC
Q psy11588        170 VCIKHSNLIPKCHSCQKCEESFDNCNNLWSHMFIKHENSDFVCNL  214 (459)
Q Consensus       170 ~~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~  214 (459)
                      |+++|+++++  |.|++|++.|.....|..|+++|+++++|.|+.
T Consensus         3 H~~~H~~~k~--~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2eoz_A            3 SGSSGTGEKP--YSCNVCGKAFVLSAHLNQHLRVHTQETLSGPSS   45 (46)
T ss_dssp             SCCCCSSCCS--EEETTTTEEESSHHHHHHHHHHHSSCCSSSCCC
T ss_pred             ccccCCCCCC--eECcccChhhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            6677888888  999999999999999999999999999999864

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.60  E-value=2.1e-08  Score=62.10  Aligned_cols=42  Identities=19%  Similarity=0.308  Sum_probs=38.2

Q ss_pred             ccccccCCCCCCcccccchhhccChhHHHHhhhhhcCCCccccC
Q psy11588        170 VCIKHSNLIPKCHSCQKCEESFDNCNNLWSHMFIKHENSDFVCN  213 (459)
Q Consensus       170 ~~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~  213 (459)
                      |+..|+++.+  |.|++|++.|.+...|..|+++|.++++|.|+
T Consensus         3 H~~~H~~~k~--~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eof_A            3 SGSSGTGEKP--YECNECQKAFNTKSNLMVHQRTHTGESGPSSG   44 (44)
T ss_dssp             CSSCCSCCCS--EECTTTCCEESCHHHHHHHHHHTTTSSCSCCC
T ss_pred             CccCCCCCCC--eECCCCCcccCCHhHHHHHHHHhCCCCCCCCC
Confidence            6677888888  99999999999999999999999999999885

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.60  E-value=2e-08  Score=61.53  Aligned_cols=41  Identities=17%  Similarity=0.301  Sum_probs=37.4

Q ss_pred             ccccccCCCCCCcccccchhhccChhHHHHhhhhhcCCCcccc
Q psy11588        170 VCIKHSNLIPKCHSCQKCEESFDNCNNLWSHMFIKHENSDFVC  212 (459)
Q Consensus       170 ~~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C  212 (459)
                      |+.+|+++++  |.|++|++.|.+...|..|+++|.++++|.|
T Consensus         2 H~~~H~~~k~--~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2en2_A            2 SSGSSGGEKP--YKCETCGARFVQVAHLRAHVLIHTGSGPSSG   42 (42)
T ss_dssp             CCCCCCSSCS--EECTTTCCEESSHHHHHHHTHHHHSCCSSCC
T ss_pred             CCcccCCCCC--EeCCCcChhhCCHHHHHHHHHHcCCCCCCCC
Confidence            5667888888  9999999999999999999999999999987

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.60  E-value=3e-08  Score=61.07  Aligned_cols=39  Identities=15%  Similarity=0.201  Sum_probs=25.3

Q ss_pred             HcCCCCccccccccccccChHHHHHHHHHcCCCCCcccc
Q psy11588        314 VHEKVRDHQCSVCGKAFADITNMKVHMRIHTGEKKYVCE  352 (459)
Q Consensus       314 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~  352 (459)
                      .|.++++|.|+.|++.|.....|..|+++|++++||.|+
T Consensus         4 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   42 (43)
T 2yrm_A            4 GSSGNGAFFCNECDCRFSEEASLKRHTLQTHSDKSGPSS   42 (43)
T ss_dssp             CCSSSCCBCCSSSCCCBSSHHHHHHHHHHHTCTTCSSSC
T ss_pred             CcCCCCCEECCCCCCeeCChHHHHHHHHhhCCCCCccCC
Confidence            355566666666666666666666666666666666665

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.59  E-value=2.6e-08  Score=58.15  Aligned_cols=34  Identities=21%  Similarity=0.358  Sum_probs=31.5

Q ss_pred             cCCCCccccccchhccCChHHHHHHHHHhCCCCC
Q psy11588        399 HTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRP  432 (459)
Q Consensus       399 H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~  432 (459)
                      |++++||.|++|++.|...+.|..|+++|++++|
T Consensus         2 h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~kp   35 (35)
T 2elx_A            2 SSGSSGYVCALCLKKFVSSIRLRSHIREVHGAAQ   35 (35)
T ss_dssp             CCCCCSEECSSSCCEESSHHHHHHHHHHTSCTTC
T ss_pred             CCCCCCeECCCCcchhCCHHHHHHHHHHHcCCCC
Confidence            6788999999999999999999999999999875

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.59  E-value=3.1e-08  Score=62.07  Aligned_cols=43  Identities=14%  Similarity=0.192  Sum_probs=38.8

Q ss_pred             ccccccCCCCCCcccccchhhccChhHHHHhhhhhcCCCccccCC
Q psy11588        170 VCIKHSNLIPKCHSCQKCEESFDNCNNLWSHMFIKHENSDFVCNL  214 (459)
Q Consensus       170 ~~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~  214 (459)
                      ++++|+++++  |.|++|++.|.....|..|+++|.++++|.|+.
T Consensus         3 h~~~h~~~k~--~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2enh_A            3 SGSSGTGEKP--YECDVCRKAFSHHASLTQHQRVHSGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCSSS--CBCTTTCCBCSSSHHHHHHGGGSCCSCCCCCCC
T ss_pred             CCCCcCCCCC--cCCCCcCchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            5667888888  999999999999999999999999999999863

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.59  E-value=2.6e-08  Score=58.63  Aligned_cols=34  Identities=24%  Similarity=0.547  Sum_probs=23.0

Q ss_pred             HhCCCCCcccCccccccCChHHHHHHHHHhcCCC
Q psy11588        426 VHTTDRPFVCDMCPSAFKLKKHLQQHYKVHLKKD  459 (459)
Q Consensus       426 ~H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~  459 (459)
                      +|.+++||.|++|++.|.+...|..|+++|.+++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2elt_A            3 SGSSGKPYKCPQCSYASAIKANLNVHLRKHTGEK   36 (36)
T ss_dssp             CSCCCCSEECSSSSCEESSHHHHHHHHHHHTCCC
T ss_pred             CCCCCCCCCCCCCCcccCCHHHHHHHHHHccCCC
Confidence            3566667777777777777777777777776653

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.59  E-value=2.9e-08  Score=61.47  Aligned_cols=42  Identities=17%  Similarity=0.198  Sum_probs=38.4

Q ss_pred             ccccccCCCCCCcccccchhhccChhHHHHhhhhhcCCCccccC
Q psy11588        170 VCIKHSNLIPKCHSCQKCEESFDNCNNLWSHMFIKHENSDFVCN  213 (459)
Q Consensus       170 ~~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~  213 (459)
                      |+..|+++.+  |.|++|++.|.+...|..|+++|.++++|.|+
T Consensus         3 H~~~H~~~k~--~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2emb_A            3 SGSSGHTRKR--YECSKCQATFNLRKHLIQHQKTHAAKSGPSSG   44 (44)
T ss_dssp             CCSCCCCCSS--EECTTTCCEESCHHHHHHHGGGGCCCCCTTCC
T ss_pred             cccccCCCCC--eECCCCCCccCCHHHHHHHHHHcCCCCCcCCC
Confidence            6677888888  99999999999999999999999999999885

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.58  E-value=2.5e-08  Score=62.44  Aligned_cols=42  Identities=14%  Similarity=0.174  Sum_probs=38.5

Q ss_pred             ccccccCCCCCCcccccchhhccChhHHHHhhhhhcCCCccccC
Q psy11588        170 VCIKHSNLIPKCHSCQKCEESFDNCNNLWSHMFIKHENSDFVCN  213 (459)
Q Consensus       170 ~~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~  213 (459)
                      |+++|+++++  |.|++|++.|.....|..|+++|.++++|.|+
T Consensus         3 H~~~H~~~k~--~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yto_A            3 SGSSGTGEKP--YKCSDCGKAFTRKSGLHIHQQSHTGERHSGPS   44 (46)
T ss_dssp             CCCCCCSCCC--EECSSSCCEESSHHHHHHHHHHHTCCCBTTTB
T ss_pred             cccccCCCCC--EECcccCCccCCHhHHHHHHHHcCCCCCCCCC
Confidence            6677888888  99999999999999999999999999999986

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.57  E-value=1.2e-08  Score=60.61  Aligned_cols=34  Identities=18%  Similarity=0.353  Sum_probs=24.5

Q ss_pred             HHhCCCCCcccCccccccCChHHHHHH-HHHhcCC
Q psy11588        425 AVHTTDRPFVCDMCPSAFKLKKHLQQH-YKVHLKK  458 (459)
Q Consensus       425 ~~H~~~~~~~C~~C~~~f~~~~~l~~H-~~~H~~~  458 (459)
                      ++|++++||+|+.|+++|.+.+.|..| +++|.++
T Consensus         2 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~~   36 (37)
T 2elm_A            2 SSGSSGHLYYCSQCHYSSITKNCLKRHVIQKHSNI   36 (37)
T ss_dssp             CSSSSSCEEECSSSSCEEECHHHHHHHHHHHTCCC
T ss_pred             CccCCCcCeECCCCCcccCCHHHHHHHHHHHccCc
Confidence            356777777777777777777777777 6777654

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.57  E-value=2.9e-08  Score=58.44  Aligned_cols=34  Identities=26%  Similarity=0.599  Sum_probs=22.7

Q ss_pred             HhCCCCCcccCccccccCChHHHHHHHHHhcCCC
Q psy11588        426 VHTTDRPFVCDMCPSAFKLKKHLQQHYKVHLKKD  459 (459)
Q Consensus       426 ~H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~  459 (459)
                      .|.+++||+|++|++.|.+...|..|+++|.+++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2elq_A            3 SGSSGKPFKCSLCEYATRSKSNLKAHMNRHSTEK   36 (36)
T ss_dssp             SSCCCCSEECSSSSCEESCHHHHHHHHHHSSTTC
T ss_pred             CCCCCCCccCCCCCchhCCHHHHHHHHHHhccCC
Confidence            3566667777777777777777777776666653

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.57  E-value=2.7e-08  Score=62.33  Aligned_cols=43  Identities=19%  Similarity=0.153  Sum_probs=39.3

Q ss_pred             ccccccCCCCCCcccccchhhccChhHHHHhhhhhcC-CCccccCC
Q psy11588        170 VCIKHSNLIPKCHSCQKCEESFDNCNNLWSHMFIKHE-NSDFVCNL  214 (459)
Q Consensus       170 ~~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~-~~~~~C~~  214 (459)
                      |+++|+++++  |.|++|++.|.+...|..|+++|.+ +++|.|++
T Consensus         3 H~~~H~~~k~--~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~C~~   46 (46)
T 2eoy_A            3 SGSSGQKEKC--FKCNKCEKTFSCSKYLTQHERIHTRGVKSGPSSG   46 (46)
T ss_dssp             CCCCCCCSCC--EECSSSCCEESSSHHHHHHHTTCCSCCTTSSSCC
T ss_pred             CccccCCCCC--EECcCCCCcCCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            6777888888  9999999999999999999999999 99999964

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.57  E-value=3e-08  Score=62.10  Aligned_cols=43  Identities=16%  Similarity=0.204  Sum_probs=39.1

Q ss_pred             ccccccCCCCCCcccccchhhccChhHHHHhhhhhcCCCccccCC
Q psy11588        170 VCIKHSNLIPKCHSCQKCEESFDNCNNLWSHMFIKHENSDFVCNL  214 (459)
Q Consensus       170 ~~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~  214 (459)
                      |++.|++.++  |.|++|++.|.....|..|+++|.++++|.|+.
T Consensus         3 H~~~H~~~k~--~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eq3_A            3 SGSSGTGEKP--YECNQCGKAFSVRSSLTTHQAIHTGKKPSGPSS   45 (46)
T ss_dssp             CCCSSCCCCS--SEETTTTEECSSHHHHHHHHTTSCCCCCCCSCC
T ss_pred             cccCCCCCCC--eECCCCChhhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            6677888888  999999999999999999999999999999863

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.57  E-value=3.7e-08  Score=58.34  Aligned_cols=35  Identities=20%  Similarity=0.450  Sum_probs=32.8

Q ss_pred             hcCCCCccccccchhccCChHHHHHHHHHhCCCCC
Q psy11588        398 AHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRP  432 (459)
Q Consensus       398 ~H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~  432 (459)
                      .|++++||.|++|++.|...+.|..|+++|++++|
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~h~~~kp   37 (37)
T 2elo_A            3 SGSSGRSYSCPVCEKSFSEDRLIKSHIKTNHPEVS   37 (37)
T ss_dssp             CCCCCCCCEETTTTEECSSHHHHHHHHHHHCSSCC
T ss_pred             CCCCCCCcCCCCCCCccCCHHHHHHHHHHHcCCCC
Confidence            68889999999999999999999999999999875

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.57  E-value=2.9e-08  Score=62.15  Aligned_cols=43  Identities=16%  Similarity=0.257  Sum_probs=38.7

Q ss_pred             ccccccCCCCCCcccccchhhccChhHHHHhhhhhcCCCccccCC
Q psy11588        170 VCIKHSNLIPKCHSCQKCEESFDNCNNLWSHMFIKHENSDFVCNL  214 (459)
Q Consensus       170 ~~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~  214 (459)
                      |+.+|+++++  |.|++|++.|.....|..|+++|.++++|.|+.
T Consensus         3 h~~~H~~~k~--~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emz_A            3 SGSSGSGERP--FKCNECGKGFGRRSHLAGHLRLHSREKSSGPSS   45 (46)
T ss_dssp             CCSCSSCCCS--CCCSSSCCCCSSHHHHHHHHHHHHHTTCCCSCC
T ss_pred             CCcCCCCCCC--eECCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            6677888888  999999999999999999999999999999863

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.56  E-value=4.2e-08  Score=57.67  Aligned_cols=33  Identities=30%  Similarity=0.610  Sum_probs=21.8

Q ss_pred             hCCCCCcccCccccccCChHHHHHHHHHhcCCC
Q psy11588        427 HTTDRPFVCDMCPSAFKLKKHLQQHYKVHLKKD  459 (459)
Q Consensus       427 H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~  459 (459)
                      |.+++||.|++|++.|.+...|..|+++|++++
T Consensus         4 h~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~ek   36 (36)
T 2elr_A            4 GSSGKTHLCDMCGKKFKSKGTLKSHKLLHTADG   36 (36)
T ss_dssp             CCCCSSCBCTTTCCBCSSHHHHHHHHHHHSSCC
T ss_pred             CCCCCCeecCcCCCCcCchHHHHHHHHHhcCCC
Confidence            556666666666666666666666666666653

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=98.56  E-value=3.2e-08  Score=57.80  Aligned_cols=34  Identities=24%  Similarity=0.479  Sum_probs=31.6

Q ss_pred             cCCCCccccccchhccCChHHHHHHHHHhCCCCC
Q psy11588        399 HTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRP  432 (459)
Q Consensus       399 H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~  432 (459)
                      |++++||.|++|++.|...+.|..|+++|++++|
T Consensus         2 H~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~~   35 (35)
T 1srk_A            2 SSGKRPFVCRICLSAFTTKANCARHLKVHTDTLS   35 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGGGTSCCC
T ss_pred             CCCCcCeeCCCCCcccCCHHHHHHHHHHcCCCCC
Confidence            7788999999999999999999999999998875

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.56  E-value=4.5e-08  Score=61.29  Aligned_cols=43  Identities=16%  Similarity=0.143  Sum_probs=38.1

Q ss_pred             ccccccCCCCCCcccccchhhccChhHHHHhhhhhcCCCccccCC
Q psy11588        170 VCIKHSNLIPKCHSCQKCEESFDNCNNLWSHMFIKHENSDFVCNL  214 (459)
Q Consensus       170 ~~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~  214 (459)
                      .+..|.++++  |.|++|++.|.+...|..|+++|.++++|.|++
T Consensus         3 ~~~~h~~~k~--~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eom_A            3 SGSSGHGERG--HRCSDCGKFFLQASNFIQHRRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCSS--CCCSSSCCCCSSHHHHHHHHHHHSSCCCSSCCC
T ss_pred             CCCCCCCCCC--cCCCCCCCeeCChHHHHHHHHHhCCCCCCCCCC
Confidence            3456777777  999999999999999999999999999999964

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.55  E-value=4.1e-08  Score=60.81  Aligned_cols=42  Identities=17%  Similarity=0.234  Sum_probs=37.7

Q ss_pred             ccccccCCCCCCcccccchhhccChhHHHHhhhhhcCCCccccC
Q psy11588        170 VCIKHSNLIPKCHSCQKCEESFDNCNNLWSHMFIKHENSDFVCN  213 (459)
Q Consensus       170 ~~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~  213 (459)
                      ++..|+++.+  |.|++|++.|.....|..|+++|.++++|.|+
T Consensus         3 h~~~h~~~~~--~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (44)
T 2eou_A            3 SGSSGAAKTT--SECQECGKIFRHSSLLIEHQALHAGESGPSSG   44 (44)
T ss_dssp             CSCSCSSSCC--CCCTTTCCCCSSHHHHHHHHHHHTTSCCCCCC
T ss_pred             CCCCCCCCcC--eECCCCCcccCCHHHHHHHHHHHCCCCCCCCC
Confidence            5567778877  99999999999999999999999999999884

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.55  E-value=3.3e-08  Score=58.20  Aligned_cols=34  Identities=24%  Similarity=0.367  Sum_probs=23.7

Q ss_pred             HhCCCCCcccCccccccCChHHHHHHHHHhcCCC
Q psy11588        426 VHTTDRPFVCDMCPSAFKLKKHLQQHYKVHLKKD  459 (459)
Q Consensus       426 ~H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~  459 (459)
                      .|++++||.|++|++.|.+.+.|..|+++|++++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2elv_A            3 SGSSGLLYDCHICERKFKNELDRDRHMLVHGDKW   36 (36)
T ss_dssp             CSCCCCCEECSSSCCEESSHHHHHHHHTTTSTTC
T ss_pred             CCCCCCCeECCCCCCccCCHHHHHHHHHHhcCCC
Confidence            3566777777777777777777777777776653

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.55  E-value=1.5e-09  Score=78.64  Aligned_cols=56  Identities=14%  Similarity=0.210  Sum_probs=42.8

Q ss_pred             hcCCCCccccccchhccCChHHHHHHHHHhCCCCCcccCccccccCChHHHHHHHHHhcC
Q psy11588        398 AHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVHLK  457 (459)
Q Consensus       398 ~H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~  457 (459)
                      .|++++||.|++|++.|.....|..|+++|++++||+|..|.    ....|..|.++|.+
T Consensus        19 ~H~~~kpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~~~----~~~~~~~~~~~~~~   74 (88)
T 1x6f_A           19 PRLQNSTYQCKHCDSKLQSTAELTSHLNIHNEEFQKRAKRQE----RRKQLLSKQKYADG   74 (88)
T ss_dssp             SCCCCSCEECSSSCCEESSHHHHHHHHHHHHHHHHHHCCCCS----CCCCCCCCCCCCCC
T ss_pred             ccCCCCCCcCCCCCCEeCCHHHHHHHHHHhCCCCCcccchhh----hHHHHHhhhccccc
Confidence            577888888888888888888888888888888888887654    34455556665554

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.54  E-value=2.8e-08  Score=69.54  Aligned_cols=68  Identities=21%  Similarity=0.226  Sum_probs=54.5

Q ss_pred             ccccchhhhhccccccccccccccchhccccccccccccCCccccchhhHhhhhHHHHHHHHhhhccCCCCCCCceeecc
Q psy11588         15 RSHLSLHLLSHSSDADEIKQELSCEQCGCSLDFHSALYTKDVYHCADCEQVFLDKFVLELHLKIEHKDNMFPKSHWFVCK   94 (459)
Q Consensus        15 ~~~l~~H~~~h~~~~~~~~~~~~C~~C~~~f~~~~~l~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~~C~   94 (459)
                      +..|..|+++|.+                          .+++.|..|++.|. ...|..|+ .|.++.      ++.|+
T Consensus         2 ~~~L~~H~~~~c~--------------------------~r~~~C~~C~~~~~-~~~L~~H~-~~c~~~------~~~C~   47 (75)
T 2d9k_A            2 SSGSSGHEETECP--------------------------LRLAVCQHCDLELS-ILKLKEHE-DYCGAR------TELCG   47 (75)
T ss_dssp             CCCCSCCCCCCCC--------------------------CCCEECSSSCCEEC-HHHHHHHH-HHHHHC------EEECS
T ss_pred             chHHHhhCcccCC--------------------------CcccCCcccChHhh-HHHHHHHH-hHcCCC------ceEcc
Confidence            4568888877776                          34567777777774 88999999 888887      89999


Q ss_pred             cCCcceeeehhHHhhhhhhccccc
Q psy11588         95 MCGHRLFMRLSDLRRHMQDYHCEF  118 (459)
Q Consensus        95 ~C~~~~f~~~~~l~~H~~~h~~~~  118 (459)
                      .|++. |. ...|..|++++.++.
T Consensus        48 ~C~~~-~~-~~~l~~H~~~c~~~~   69 (75)
T 2d9k_A           48 NCGRN-VL-VKDLKTHPEVCGREG   69 (75)
T ss_dssp             SSCCE-EE-TTGGGTHHHHBTTBS
T ss_pred             cCCCc-Cc-HHHHHHHHHHccCCc
Confidence            99987 76 699999999987653

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.54  E-value=4.2e-08  Score=61.10  Aligned_cols=43  Identities=21%  Similarity=0.258  Sum_probs=38.2

Q ss_pred             ccccccCCCCCCcccccchhhccChhHHHHhhhhhcCCCccccCC
Q psy11588        170 VCIKHSNLIPKCHSCQKCEESFDNCNNLWSHMFIKHENSDFVCNL  214 (459)
Q Consensus       170 ~~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~  214 (459)
                      +...|+++++  |.|++|++.|.....|..|+++|.++++|.|++
T Consensus         3 ~~~~h~~~k~--~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (45)
T 2epu_A            3 SGSSGTGQKP--FECTHCGKSFRAKGNLVTHQRIHTGEKSGPSSG   45 (45)
T ss_dssp             CCCCCCSCCS--EEETTTTEEESSHHHHHHHHTTTSSCCCCCSCC
T ss_pred             CCCCCCCCcC--ccCCCCCCccCChHHHHHHHHHhCCCCCCCCCC
Confidence            3456777777  999999999999999999999999999999974

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.53  E-value=3e-08  Score=62.13  Aligned_cols=42  Identities=14%  Similarity=0.243  Sum_probs=38.4

Q ss_pred             ccccccCCCCCCcccccchhhccChhHHHHhhhhhcCCCccccC
Q psy11588        170 VCIKHSNLIPKCHSCQKCEESFDNCNNLWSHMFIKHENSDFVCN  213 (459)
Q Consensus       170 ~~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~  213 (459)
                      |+.+|+++++  |.|++|++.|.....|..|+++|.++++|.|+
T Consensus         3 H~~~H~~~k~--~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2en3_A            3 SGSSGTGEKP--FQCKECGMNFSWSCSLFKHLRSHERTDPSGPS   44 (46)
T ss_dssp             CCCCSCCCCS--EECSSSCCEESSSHHHHHHHHHHHHSCCSSCS
T ss_pred             cccccCCCCC--eeCcccChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            6677888888  99999999999999999999999999999986

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.53  E-value=3.5e-08  Score=61.11  Aligned_cols=42  Identities=17%  Similarity=0.230  Sum_probs=38.5

Q ss_pred             ccccccCCCCCCcccccchhhccChhHHHHhhhhhcCCCccccC
Q psy11588        170 VCIKHSNLIPKCHSCQKCEESFDNCNNLWSHMFIKHENSDFVCN  213 (459)
Q Consensus       170 ~~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~  213 (459)
                      |+.+|+++.+  |.|++|++.|.+...|..|+++|.++++|.|.
T Consensus         3 H~~~H~~~~~--~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eox_A            3 SGSSGTDSKS--YNCNECGKAFTRIFHLTRHQKIHTRKSGPSSG   44 (44)
T ss_dssp             CCCCCCCCCC--EEETTTTEEESSSHHHHTTHHHHCCCCCCSCC
T ss_pred             CCcCCCCCCC--eECcccCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            6677888888  99999999999999999999999999999884

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.52  E-value=3.8e-08  Score=59.87  Aligned_cols=38  Identities=32%  Similarity=0.516  Sum_probs=25.3

Q ss_pred             HcCCCCccccccccccccChHHHHHHHHHcCCCCCccc
Q psy11588        314 VHEKVRDHQCSVCGKAFADITNMKVHMRIHTGEKKYVC  351 (459)
Q Consensus       314 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C  351 (459)
                      .|.++++|.|++|++.|.....|..|+++|++++||.|
T Consensus         4 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   41 (41)
T 2ept_A            4 GSSGQRVYECQECGKSFRQKGSLTLHERIHTGSGPSSG   41 (41)
T ss_dssp             SCCCCCCEECSSSCCEESSHHHHHHHGGGCCCCSCSCC
T ss_pred             ccCCCCCeECCCCCCCcCCHHHHHHHHHHhCCCCCcCC
Confidence            45566666666666666666666666666666666665

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.52  E-value=5.7e-08  Score=57.12  Aligned_cols=33  Identities=30%  Similarity=0.756  Sum_probs=22.3

Q ss_pred             hCCCCCcccCccccccCChHHHHHHHHHhcCCC
Q psy11588        427 HTTDRPFVCDMCPSAFKLKKHLQQHYKVHLKKD  459 (459)
Q Consensus       427 H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~  459 (459)
                      |.+++||.|++|++.|.+...|..|+++|.+++
T Consensus         4 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2els_A            4 GSSGKIFTCEYCNKVFKFKHSLQAHLRIHTNEK   36 (36)
T ss_dssp             TSCCCCEECTTTCCEESSHHHHHHHHHHHCCCC
T ss_pred             CCCCCCEECCCCCceeCCHHHHHHHHHHhCCCC
Confidence            456667777777777777777777777766653

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=98.52  E-value=5e-08  Score=58.58  Aligned_cols=33  Identities=24%  Similarity=0.568  Sum_probs=30.2

Q ss_pred             hCCCCCcccCccccccCChHHHHHHHHHhcCCC
Q psy11588        427 HTTDRPFVCDMCPSAFKLKKHLQQHYKVHLKKD  459 (459)
Q Consensus       427 H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~  459 (459)
                      |++++||.|++|++.|.+.+.|..|+++|.+++
T Consensus         1 h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k   33 (39)
T 1njq_A            1 XWPPRSYTCSFCKREFRSAQALGGHMNVHRRDR   33 (39)
T ss_dssp             -CCSSSEECTTTCCEESSHHHHHHHHHTTCCSC
T ss_pred             CCCCCceECCCCCcccCCHHHHHHHHHHcCCCc
Confidence            678999999999999999999999999999864

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.51  E-value=5.5e-08  Score=61.51  Aligned_cols=44  Identities=14%  Similarity=0.088  Sum_probs=39.8

Q ss_pred             ccccccCCCCCCcccc--cchhhccChhHHHHhhhhhcCCCccccCCC
Q psy11588        170 VCIKHSNLIPKCHSCQ--KCEESFDNCNNLWSHMFIKHENSDFVCNLC  215 (459)
Q Consensus       170 ~~~~h~~~~~~~~~C~--~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C  215 (459)
                      +.++|+++++  |.|+  .|++.|.....|..|+++|.++++|.|.+|
T Consensus         3 ~~~~H~~~k~--~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   48 (48)
T 2ent_A            3 SGSSGTGEKP--FACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPSSG   48 (48)
T ss_dssp             CCCSSCCCCC--EECCSSSCCCEESSHHHHHHHHTTSCCCCSCSSCCC
T ss_pred             CCCCcCCCCC--eECCCCCCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            4456777877  9998  899999999999999999999999999987

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=98.50  E-value=3.3e-08  Score=58.58  Aligned_cols=36  Identities=22%  Similarity=0.269  Sum_probs=31.3

Q ss_pred             HHHhhcCCCCccccccchhccCChHHHHHHHHHhCCC
Q psy11588        394 HIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTD  430 (459)
Q Consensus       394 H~~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~  430 (459)
                      |++ .|++++||+|+.|++.|.....|..|+++|+++
T Consensus         2 H~~-~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   37 (37)
T 1p7a_A            2 STR-GSTGIKPFQCPDCDRSFSRSDHLALHRKRHMLV   37 (37)
T ss_dssp             CSS-TTCCSSSBCCTTTCCCBSSHHHHHHHHGGGTCC
T ss_pred             CCC-cCCCCCCccCCCCCcccCcHHHHHHHHHHhccC
Confidence            444 688899999999999999999999999999874

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=98.49  E-value=4.7e-08  Score=61.80  Aligned_cols=32  Identities=31%  Similarity=0.633  Sum_probs=15.7

Q ss_pred             cCCCCccccccchhccCChHHHHHHHH-HhCCC
Q psy11588        399 HTIRQKSICDVCGKEFKMKKRLKEHMA-VHTTD  430 (459)
Q Consensus       399 H~~~~~~~C~~C~~~f~~~~~l~~H~~-~H~~~  430 (459)
                      |++++||.|++|++.|.....|..|++ +|.++
T Consensus         2 Ht~~kp~~C~~C~k~F~~~~~L~~H~~~~H~~e   34 (48)
T 3iuf_A            2 EDRDKPYACDICGKRYKNRPGLSYHYAHSHLAE   34 (48)
T ss_dssp             CTTTSCEECTTTCCEESSHHHHHHHHHHSSCC-
T ss_pred             CCCCcCEECCCcCcccCCHHHHHHHhhhhcCCC
Confidence            444455555555555555555555555 44443

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.46  E-value=1e-07  Score=56.40  Aligned_cols=33  Identities=24%  Similarity=0.316  Sum_probs=30.1

Q ss_pred             hcCCCCcccccc--chhccCChHHHHHHHHHhCCC
Q psy11588        398 AHTIRQKSICDV--CGKEFKMKKRLKEHMAVHTTD  430 (459)
Q Consensus       398 ~H~~~~~~~C~~--C~~~f~~~~~l~~H~~~H~~~  430 (459)
                      .+++++||+|+.  |+++|..++.|..|+++|+++
T Consensus         3 ~~~gekp~~C~~~~C~k~F~~~~~L~~H~r~Htg~   37 (38)
T 2eln_A            3 SGSSGILLKCPTDGCDYSTPDKYKLQAHLKVHTAL   37 (38)
T ss_dssp             CSSCCCCEECSSSSCCCEESCHHHHHHHHHHHSCC
T ss_pred             CCCCCCCCCCCCCCCCCccCCHHHHHHHHHhcCCC
Confidence            467889999986  999999999999999999986

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.46  E-value=7.4e-08  Score=57.42  Aligned_cols=35  Identities=23%  Similarity=0.436  Sum_probs=24.8

Q ss_pred             cCCCCccccc--cchhccCChHHHHHHHHHhCCCCCc
Q psy11588        399 HTIRQKSICD--VCGKEFKMKKRLKEHMAVHTTDRPF  433 (459)
Q Consensus       399 H~~~~~~~C~--~C~~~f~~~~~l~~H~~~H~~~~~~  433 (459)
                      |++++||.|+  .|++.|...+.|..|+++|++++||
T Consensus         1 H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~   37 (38)
T 1bhi_A            1 MSDDKPFLCTAPGCGQRFTNEDHLAVHKHKHEMTLKF   37 (38)
T ss_dssp             CTTCCCEECCCTTTCCEESSHHHHHHHHHHHHTTTTT
T ss_pred             CCCCcceECCCCCCCcccCCHHHHHHHHHHhCCCCCC
Confidence            4556777777  4777777777777777777777765

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=98.44  E-value=1.1e-07  Score=56.18  Aligned_cols=33  Identities=18%  Similarity=0.530  Sum_probs=23.7

Q ss_pred             hCCCCCcccCc--cccccCChHHHHHHHHHhcCCC
Q psy11588        427 HTTDRPFVCDM--CPSAFKLKKHLQQHYKVHLKKD  459 (459)
Q Consensus       427 H~~~~~~~C~~--C~~~f~~~~~l~~H~~~H~~~~  459 (459)
                      |++++||.|.+  |++.|.+.+.|..|+++|++++
T Consensus         3 ~~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~ek   37 (37)
T 1va1_A            3 PGKKKQHICHIQGCGKVYGKTSHLRAHLRWHTGER   37 (37)
T ss_dssp             SSSCCCEECCSTTCCCEESCHHHHHHHHHHHHTTC
T ss_pred             CCCCCCCCCCCCCCCCccCCHHHHHHHHHhcCCCC
Confidence            56677777764  7777777777777777777653

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.41  E-value=1.6e-07  Score=55.11  Aligned_cols=34  Identities=21%  Similarity=0.384  Sum_probs=31.2

Q ss_pred             hcCCCCccccccchhccCChHHHHHHHHHhCCCC
Q psy11588        398 AHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDR  431 (459)
Q Consensus       398 ~H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~  431 (459)
                      .|.+++||.|++|++.|.....|..|+++|++++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2elt_A            3 SGSSGKPYKCPQCSYASAIKANLNVHLRKHTGEK   36 (36)
T ss_dssp             CSCCCCSEECSSSSCEESSHHHHHHHHHHHTCCC
T ss_pred             CCCCCCCCCCCCCCcccCCHHHHHHHHHHccCCC
Confidence            5788999999999999999999999999998874

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.40  E-value=2.2e-07  Score=54.50  Aligned_cols=34  Identities=41%  Similarity=0.774  Sum_probs=31.1

Q ss_pred             hcCCCCccccccchhccCChHHHHHHHHHhCCCC
Q psy11588        398 AHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDR  431 (459)
Q Consensus       398 ~H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~  431 (459)
                      .|.++++|.|++|++.|.....|..|+++|++++
T Consensus         3 ~h~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~ek   36 (36)
T 2elr_A            3 SGSSGKTHLCDMCGKKFKSKGTLKSHKLLHTADG   36 (36)
T ss_dssp             CCCCCSSCBCTTTCCBCSSHHHHHHHHHHHSSCC
T ss_pred             CCCCCCCeecCcCCCCcCchHHHHHHHHHhcCCC
Confidence            5788899999999999999999999999998874

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.40  E-value=1.8e-07  Score=54.90  Aligned_cols=34  Identities=26%  Similarity=0.492  Sum_probs=31.1

Q ss_pred             hcCCCCccccccchhccCChHHHHHHHHHhCCCC
Q psy11588        398 AHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDR  431 (459)
Q Consensus       398 ~H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~  431 (459)
                      .|.+++||+|++|++.|.....|..|+++|++++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2elq_A            3 SGSSGKPFKCSLCEYATRSKSNLKAHMNRHSTEK   36 (36)
T ss_dssp             SSCCCCSEECSSSSCEESCHHHHHHHHHHSSTTC
T ss_pred             CCCCCCCccCCCCCchhCCHHHHHHHHHHhccCC
Confidence            5788999999999999999999999999998864

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.39  E-value=1.9e-08  Score=63.34  Aligned_cols=39  Identities=23%  Similarity=0.519  Sum_probs=29.4

Q ss_pred             HHHHHHhCCCCCcccC--ccccccCChHHHHHHHHHhcCCC
Q psy11588        421 KEHMAVHTTDRPFVCD--MCPSAFKLKKHLQQHYKVHLKKD  459 (459)
Q Consensus       421 ~~H~~~H~~~~~~~C~--~C~~~f~~~~~l~~H~~~H~~~~  459 (459)
                      ..|...|++++||.|+  .|+++|.+.+.|..|+++|++++
T Consensus         7 ~~~~~~H~~~k~~~C~~~~C~k~F~~~~~L~~H~~~H~~ek   47 (47)
T 1ncs_A            7 IDKYVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             GGGSCEEETTTEEECCCTTCCCEECSSSSHHHHHHHHTTTC
T ss_pred             HHHHhccCCCCCeECCCCCCCCccCCHHHHHHHHHHccCCC
Confidence            3445567888888885  68888888888888888887764

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=98.39  E-value=2.1e-07  Score=53.38  Aligned_cols=29  Identities=31%  Similarity=0.622  Sum_probs=27.2

Q ss_pred             CCcccCccccccCChHHHHHHHHHhcCCC
Q psy11588        431 RPFVCDMCPSAFKLKKHLQQHYKVHLKKD  459 (459)
Q Consensus       431 ~~~~C~~C~~~f~~~~~l~~H~~~H~~~~  459 (459)
                      +||.|++|++.|.+.+.|..|+++|++++
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~~~H~~~~   29 (33)
T 1rim_A            1 YKFACPECPKRFMRSDHLSKHITLHELLG   29 (33)
T ss_dssp             CCCCCSSSCCCCSSHHHHHHHHHHHTTTC
T ss_pred             CcccCCCCCchhCCHHHHHHHHHHhCCCC
Confidence            58999999999999999999999999874

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=98.38  E-value=1.3e-07  Score=55.03  Aligned_cols=32  Identities=22%  Similarity=0.500  Sum_probs=24.4

Q ss_pred             cCCCCccccccchhccCChHHHHHHHHHhCCCCCcccCc
Q psy11588        399 HTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDM  437 (459)
Q Consensus       399 H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~~  437 (459)
                      +.+++||+|+.||++|..++.|..|+       ||.|+.
T Consensus         3 ~~gekp~~C~~CgK~F~~~s~L~~H~-------py~C~~   34 (36)
T 1fv5_A            3 LLKPARFMCLPCGIAFSSPSTLEAHQ-------AYYCSH   34 (36)
T ss_dssp             SSSCCCCEETTTTEECSCHHHHHHHH-------HHTSTT
T ss_pred             CCCccCeECCCCCCccCCHhHccCcC-------CeECcC
Confidence            45677888888888888888888887       677754

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.37  E-value=1.6e-07  Score=55.13  Aligned_cols=34  Identities=24%  Similarity=0.397  Sum_probs=30.7

Q ss_pred             hcCCCCccccccchhccCChHHHHHHHHHhCCCC
Q psy11588        398 AHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDR  431 (459)
Q Consensus       398 ~H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~  431 (459)
                      .|.+++||.|++|++.|...+.|..|+++|++++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2elv_A            3 SGSSGLLYDCHICERKFKNELDRDRHMLVHGDKW   36 (36)
T ss_dssp             CSCCCCCEECSSSCCEESSHHHHHHHHTTTSTTC
T ss_pred             CCCCCCCeECCCCCCccCCHHHHHHHHHHhcCCC
Confidence            4778899999999999999999999999998764

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.36  E-value=2.2e-07  Score=55.28  Aligned_cols=33  Identities=30%  Similarity=0.569  Sum_probs=30.4

Q ss_pred             hCCCCCcccC--ccccccCChHHHHHHHHHhcCCC
Q psy11588        427 HTTDRPFVCD--MCPSAFKLKKHLQQHYKVHLKKD  459 (459)
Q Consensus       427 H~~~~~~~C~--~C~~~f~~~~~l~~H~~~H~~~~  459 (459)
                      |++++||.|+  .|++.|.+.+.|..|+++|.+++
T Consensus         1 H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k   35 (38)
T 1bhi_A            1 MSDDKPFLCTAPGCGQRFTNEDHLAVHKHKHEMTL   35 (38)
T ss_dssp             CTTCCCEECCCTTTCCEESSHHHHHHHHHHHHTTT
T ss_pred             CCCCcceECCCCCCCcccCCHHHHHHHHHHhCCCC
Confidence            6789999999  59999999999999999999864

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.35  E-value=1.7e-07  Score=55.35  Aligned_cols=34  Identities=18%  Similarity=0.311  Sum_probs=31.0

Q ss_pred             hcCCCCccccccchhccCCh-HHHHHHHHHhCCCC
Q psy11588        398 AHTIRQKSICDVCGKEFKMK-KRLKEHMAVHTTDR  431 (459)
Q Consensus       398 ~H~~~~~~~C~~C~~~f~~~-~~l~~H~~~H~~~~  431 (459)
                      .|++++||.|++|++.|... +.|..|+++|++++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~~L~~H~~~H~~~k   37 (37)
T 2elp_A            3 SGSSGRAMKCPYCDFYFMKNGSDLQRHIWAHEGVK   37 (37)
T ss_dssp             SCCCCCCEECSSSSCEECSSCHHHHHHHHHHHTCC
T ss_pred             CCCCCCCeECCCCChhhccCHHHHHHHHHhcCCCC
Confidence            57889999999999999999 99999999998864

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.34  E-value=2.6e-07  Score=54.14  Aligned_cols=34  Identities=29%  Similarity=0.660  Sum_probs=30.7

Q ss_pred             hcCCCCccccccchhccCChHHHHHHHHHhCCCC
Q psy11588        398 AHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDR  431 (459)
Q Consensus       398 ~H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~  431 (459)
                      .|.+++||.|++|++.|.....|..|+++|++++
T Consensus         3 ~~~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2els_A            3 SGSSGKIFTCEYCNKVFKFKHSLQAHLRIHTNEK   36 (36)
T ss_dssp             TTSCCCCEECTTTCCEESSHHHHHHHHHHHCCCC
T ss_pred             CCCCCCCEECCCCCceeCCHHHHHHHHHHhCCCC
Confidence            4678899999999999999999999999998864

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=98.34  E-value=3.5e-07  Score=50.52  Aligned_cols=27  Identities=41%  Similarity=1.020  Sum_probs=17.2

Q ss_pred             CcccCccccccCChHHHHHHHHHhcCC
Q psy11588        432 PFVCDMCPSAFKLKKHLQQHYKVHLKK  458 (459)
Q Consensus       432 ~~~C~~C~~~f~~~~~l~~H~~~H~~~  458 (459)
                      ||.|++|++.|.+...|..|+++|.++
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~~h~~~   28 (29)
T 1ard_A            2 SFVCEVCTRAFARQEHLKRHYRSHTNE   28 (29)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHHSCC
T ss_pred             CeECCCCCcccCCHHHHHHHHHHhcCC
Confidence            566666666666666666666666654

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.33  E-value=2.5e-07  Score=51.53  Aligned_cols=28  Identities=25%  Similarity=0.611  Sum_probs=18.0

Q ss_pred             CCcccCccccccCChHHHHHHHHHhcCC
Q psy11588        431 RPFVCDMCPSAFKLKKHLQQHYKVHLKK  458 (459)
Q Consensus       431 ~~~~C~~C~~~f~~~~~l~~H~~~H~~~  458 (459)
                      +||.|+.|++.|.....|..|+++|.++
T Consensus         2 k~~~C~~C~~~f~~~~~l~~H~~~h~~~   29 (30)
T 2m0d_A            2 KPYQCDYCGRSFSDPTSKMRHLETHDTD   29 (30)
T ss_dssp             CCEECTTTCCEESCHHHHHHHHHTTCCC
T ss_pred             cCccCCCCCcccCCHHHHHHHHHHhccC
Confidence            5666666666666666666666666654

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=98.33  E-value=2.4e-07  Score=51.18  Aligned_cols=29  Identities=34%  Similarity=0.658  Sum_probs=19.5

Q ss_pred             CCcccCccccccCChHHHHHHHHHhcCCC
Q psy11588        431 RPFVCDMCPSAFKLKKHLQQHYKVHLKKD  459 (459)
Q Consensus       431 ~~~~C~~C~~~f~~~~~l~~H~~~H~~~~  459 (459)
                      +||.|+.|++.|.+...|..|+++|.+++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   29 (29)
T 1rik_A            1 YKFACPECPKRFMRSDHLTLHILLHENKK   29 (29)
T ss_dssp             CCEECSSSSCEESCSHHHHHHHTGGGSCC
T ss_pred             CCccCCCCCchhCCHHHHHHHHHHhcCCC
Confidence            45667777777777777777777766653

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.32  E-value=3.6e-07  Score=60.67  Aligned_cols=34  Identities=32%  Similarity=0.593  Sum_probs=30.0

Q ss_pred             HhCCCCCcccCc--cccccCChHHHHHHH-HHhcCCC
Q psy11588        426 VHTTDRPFVCDM--CPSAFKLKKHLQQHY-KVHLKKD  459 (459)
Q Consensus       426 ~H~~~~~~~C~~--C~~~f~~~~~l~~H~-~~H~~~~  459 (459)
                      ..++++||+|..  |+++|.+.++|..|+ ++|++++
T Consensus        21 ~~sGEKPYkC~~~~CgKaFsr~s~L~~H~rriHTgEK   57 (73)
T 1x3c_A           21 RYSPYRPYRCVHQGCFAAFTIQQNLILHYQAVHKSDL   57 (73)
T ss_dssp             SSCSSCSCBCCSTTCCCBCSSHHHHHHHHHHHSSSCC
T ss_pred             cccCCCCeECCCCCcChhHcCHHHHHHHhhhhCCCCC
Confidence            357899999975  999999999999998 6899875

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.28  E-value=5.2e-08  Score=70.42  Aligned_cols=53  Identities=19%  Similarity=0.258  Sum_probs=44.0

Q ss_pred             CCccccchhhHhhhhHHHHHHHHhhhccCCCCCCCceeecccCCcceeeehhHHhhhhhhcccc
Q psy11588         54 KDVYHCADCEQVFLDKFVLELHLKIEHKDNMFPKSHWFVCKMCGHRLFMRLSDLRRHMQDYHCE  117 (459)
Q Consensus        54 ~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~~C~~C~~~~f~~~~~l~~H~~~h~~~  117 (459)
                      +++|.|++|++.|.....|..|+++|.+++      +|.|..|.     ....|..|.+.|.+.
T Consensus        23 ~kpy~C~~C~k~F~~~~~L~~H~~~Ht~ek------p~~C~~~~-----~~~~~~~~~~~~~~~   75 (88)
T 1x6f_A           23 NSTYQCKHCDSKLQSTAELTSHLNIHNEEF------QKRAKRQE-----RRKQLLSKQKYADGA   75 (88)
T ss_dssp             CSCEECSSSCCEESSHHHHHHHHHHHHHHH------HHHCCCCS-----CCCCCCCCCCCCCCS
T ss_pred             CCCCcCCCCCCEeCCHHHHHHHHHHhCCCC------Ccccchhh-----hHHHHHhhhcccccc
Confidence            567889999999999999999999999887      78997665     446788888888763

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.28  E-value=4.2e-07  Score=50.15  Aligned_cols=29  Identities=24%  Similarity=0.635  Sum_probs=19.3

Q ss_pred             CCcccCccccccCChHHHHHHHHHhcCCC
Q psy11588        431 RPFVCDMCPSAFKLKKHLQQHYKVHLKKD  459 (459)
Q Consensus       431 ~~~~C~~C~~~f~~~~~l~~H~~~H~~~~  459 (459)
                      +||.|+.|++.|.+...|..|+++|++++
T Consensus         1 ~~~~C~~C~k~f~~~~~l~~H~~~H~~~k   29 (29)
T 2m0f_A            1 GPLKCRECGKQFTTSGNLKRHLRIHSGEK   29 (29)
T ss_dssp             CCEECTTTSCEESCHHHHHHHHHHHHTCC
T ss_pred             CCccCCCCCCccCChhHHHHHHHHhcCCC
Confidence            35667777777777777777776666653

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=98.28  E-value=2.6e-08  Score=56.89  Aligned_cols=31  Identities=19%  Similarity=0.322  Sum_probs=25.0

Q ss_pred             CccccccchhccCChHHHHHHHHHhCCCCCc
Q psy11588        403 QKSICDVCGKEFKMKKRLKEHMAVHTTDRPF  433 (459)
Q Consensus       403 ~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~  433 (459)
                      +||.|++||+.|...+.|..|+++|++++||
T Consensus         1 kp~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   31 (32)
T 2kfq_A            1 YAFACPACPKRFMRSDALSKHIKTAFIVVAL   31 (32)
T ss_dssp             CCSSSSSSCTTHHHHHTTSSSTTSSSSSSSC
T ss_pred             CCCCCCCCCcccCCHHHHHHHHHHHccCCCC
Confidence            3678888888888888888888888888776

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.27  E-value=5.3e-07  Score=51.16  Aligned_cols=30  Identities=43%  Similarity=0.780  Sum_probs=20.0

Q ss_pred             CCCcccC--ccccccCChHHHHHHHHHhcCCC
Q psy11588        430 DRPFVCD--MCPSAFKLKKHLQQHYKVHLKKD  459 (459)
Q Consensus       430 ~~~~~C~--~C~~~f~~~~~l~~H~~~H~~~~  459 (459)
                      ++||.|+  .|++.|.+.+.|..|+++|++++
T Consensus         1 ek~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~   32 (32)
T 1zfd_A            1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQEKA   32 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGTCCC
T ss_pred             CCCCcCcCCCCCCccCCHHHHHHHHHHccCCC
Confidence            3566776  67777777777777777776653

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.25  E-value=5.7e-07  Score=49.55  Aligned_cols=28  Identities=25%  Similarity=0.613  Sum_probs=19.1

Q ss_pred             CCcccCccccccCChHHHHHHHHHhcCC
Q psy11588        431 RPFVCDMCPSAFKLKKHLQQHYKVHLKK  458 (459)
Q Consensus       431 ~~~~C~~C~~~f~~~~~l~~H~~~H~~~  458 (459)
                      +||.|+.|++.|.+...|..|+++|+++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~   28 (29)
T 2m0e_A            1 KEHKCPHCDKKFNQVGNLKAHLKIHIAD   28 (29)
T ss_dssp             CCCCCSSCCCCCCTTTHHHHHHHHHHSC
T ss_pred             CCCcCCCCCcccCCHHHHHHHHHHhccC
Confidence            4566777777777777777777776665

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.25  E-value=3.8e-07  Score=49.90  Aligned_cols=27  Identities=41%  Similarity=1.030  Sum_probs=17.5

Q ss_pred             CCcccCccccccCChHHHHHHHHHhcC
Q psy11588        431 RPFVCDMCPSAFKLKKHLQQHYKVHLK  457 (459)
Q Consensus       431 ~~~~C~~C~~~f~~~~~l~~H~~~H~~  457 (459)
                      +||.|++|++.|.+...|..|+++|++
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~h~~   28 (28)
T 2kvf_A            2 RPYSCSVCGKRFSLKHQMETHYRVHTG   28 (28)
T ss_dssp             CSEECSSSCCEESCHHHHHHHHTTSCC
T ss_pred             cCccCCCCCcccCCHHHHHHHHHhcCC
Confidence            566666666666666666666666653

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.24  E-value=4.7e-07  Score=53.42  Aligned_cols=33  Identities=21%  Similarity=0.287  Sum_probs=30.0

Q ss_pred             hcCCCCccccccchhccCChHHHHHH-HHHhCCC
Q psy11588        398 AHTIRQKSICDVCGKEFKMKKRLKEH-MAVHTTD  430 (459)
Q Consensus       398 ~H~~~~~~~C~~C~~~f~~~~~l~~H-~~~H~~~  430 (459)
                      .|++++||+|+.|++.|...+.|..| +++|+++
T Consensus         3 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~~   36 (37)
T 2elm_A            3 SGSSGHLYYCSQCHYSSITKNCLKRHVIQKHSNI   36 (37)
T ss_dssp             SSSSSCEEECSSSSCEEECHHHHHHHHHHHTCCC
T ss_pred             ccCCCcCeECCCCCcccCCHHHHHHHHHHHccCc
Confidence            58889999999999999999999999 8899875

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.24  E-value=5.6e-07  Score=48.76  Aligned_cols=25  Identities=28%  Similarity=0.809  Sum_probs=16.2

Q ss_pred             CCcccCccccccCChHHHHHHHHHh
Q psy11588        431 RPFVCDMCPSAFKLKKHLQQHYKVH  455 (459)
Q Consensus       431 ~~~~C~~C~~~f~~~~~l~~H~~~H  455 (459)
                      +||.|+.|++.|.+.+.|..|+++|
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~H   26 (27)
T 2kvh_A            2 KPFSCSLCPQRSRDFSAMTKHLRTH   26 (27)
T ss_dssp             CCEECSSSSCEESSHHHHHHHHHHC
T ss_pred             cCccCCCcChhhCCHHHHHHHHHHc
Confidence            5666666666666666666666665

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.23  E-value=6.9e-07  Score=60.06  Aligned_cols=42  Identities=24%  Similarity=0.337  Sum_probs=33.9

Q ss_pred             hcCCCCccccccchhccCChHHHHHHHHHhCCCCCcccCcccc
Q psy11588        398 AHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMCPS  440 (459)
Q Consensus       398 ~H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~~C~~  440 (459)
                      .+.+++||+|.+|++.|.....|..|+++|+++. ..+.+++.
T Consensus         7 ~~~~ekpy~C~~CgK~F~~~s~L~~H~r~Htg~~-~~~~~~~~   48 (66)
T 2epp_A            7 GLREAGILPCGLCGKVFTDANRLRQHEAQHGVTS-LQLGYIDL   48 (66)
T ss_dssp             SCCCCCCCCCTTTCCCCSCHHHHHHHHHHHTTTS-CCCCSCCC
T ss_pred             CCCCccCcCCCCCCCccCCHHHHHhhhhhhCCCc-cccccccC
Confidence            4677899999999999999999999999998864 45555543

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=98.23  E-value=5.8e-07  Score=50.57  Aligned_cols=28  Identities=36%  Similarity=0.799  Sum_probs=17.2

Q ss_pred             CCcccC--ccccccCChHHHHHHHHHhcCC
Q psy11588        431 RPFVCD--MCPSAFKLKKHLQQHYKVHLKK  458 (459)
Q Consensus       431 ~~~~C~--~C~~~f~~~~~l~~H~~~H~~~  458 (459)
                      +||.|+  .|++.|.+.+.|..|+++|+++
T Consensus         1 kp~~C~~~~C~k~f~~~~~L~~H~~~H~~~   30 (31)
T 1sp2_A            1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGE   30 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTSCC
T ss_pred             CCcCCcCCCCCcccCCHhHHHHHHHHhcCC
Confidence            356665  6666666666666666666654

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=98.23  E-value=4.4e-07  Score=57.19  Aligned_cols=33  Identities=33%  Similarity=0.777  Sum_probs=29.4

Q ss_pred             HhCCCCCcccCccccccCChHHHHHHHH-HhcCC
Q psy11588        426 VHTTDRPFVCDMCPSAFKLKKHLQQHYK-VHLKK  458 (459)
Q Consensus       426 ~H~~~~~~~C~~C~~~f~~~~~l~~H~~-~H~~~  458 (459)
                      +|++++||.|.+|++.|.+...|..|++ +|.++
T Consensus         1 ~Ht~~kp~~C~~C~k~F~~~~~L~~H~~~~H~~e   34 (48)
T 3iuf_A            1 GEDRDKPYACDICGKRYKNRPGLSYHYAHSHLAE   34 (48)
T ss_dssp             -CTTTSCEECTTTCCEESSHHHHHHHHHHSSCC-
T ss_pred             CCCCCcCEECCCcCcccCCHHHHHHHhhhhcCCC
Confidence            5889999999999999999999999999 99875

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=98.22  E-value=5.3e-07  Score=53.20  Aligned_cols=34  Identities=29%  Similarity=0.685  Sum_probs=30.4

Q ss_pred             hcCCCCcccccc--chhccCChHHHHHHHHHhCCCC
Q psy11588        398 AHTIRQKSICDV--CGKEFKMKKRLKEHMAVHTTDR  431 (459)
Q Consensus       398 ~H~~~~~~~C~~--C~~~f~~~~~l~~H~~~H~~~~  431 (459)
                      .|++++||.|++  |++.|...+.|..|+++|++++
T Consensus         2 ~~~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~ek   37 (37)
T 1va1_A            2 DPGKKKQHICHIQGCGKVYGKTSHLRAHLRWHTGER   37 (37)
T ss_dssp             CSSSCCCEECCSTTCCCEESCHHHHHHHHHHHHTTC
T ss_pred             CCCCCCCCCCCCCCCCCccCCHHHHHHHHHhcCCCC
Confidence            477889999995  9999999999999999998874

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.22  E-value=3.7e-07  Score=49.51  Aligned_cols=25  Identities=24%  Similarity=0.616  Sum_probs=16.0

Q ss_pred             CCcccCccccccCChHHHHHHHHHh
Q psy11588        431 RPFVCDMCPSAFKLKKHLQQHYKVH  455 (459)
Q Consensus       431 ~~~~C~~C~~~f~~~~~l~~H~~~H  455 (459)
                      +||.|+.|++.|.+.+.|..|+++|
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~H   26 (27)
T 2kvg_A            2 APYRCPLCRAGCPSLASMQAHMRGH   26 (27)
T ss_dssp             CTEEETTTTEEESCHHHHHHHHTTC
T ss_pred             cCcCCCCCCcccCCHHHHHHHHHhc
Confidence            5666666666666666666666655

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.53  E-value=1.6e-07  Score=51.99  Aligned_cols=27  Identities=33%  Similarity=0.598  Sum_probs=16.2

Q ss_pred             CcccCccccccCChHHHHHHHHHhcCC
Q psy11588        432 PFVCDMCPSAFKLKKHLQQHYKVHLKK  458 (459)
Q Consensus       432 ~~~C~~C~~~f~~~~~l~~H~~~H~~~  458 (459)
                      ||.|+.|++.|.+.+.|..|+++|+++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~H~~~   28 (29)
T 2lvt_A            2 PCQCVMCGKAFTQASSLIAHVRQHTGE   28 (29)
Confidence            556666666666666666666666554

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=98.21  E-value=9.4e-07  Score=49.08  Aligned_cols=26  Identities=19%  Similarity=0.392  Sum_probs=13.2

Q ss_pred             CcccCccccccCChHHHHHHHHHhcC
Q psy11588        432 PFVCDMCPSAFKLKKHLQQHYKVHLK  457 (459)
Q Consensus       432 ~~~C~~C~~~f~~~~~l~~H~~~H~~  457 (459)
                      ||.|+.|++.|.+.+.|..|+++|++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~h~~   27 (30)
T 1klr_A            2 TYQCQYCEFRSADSSNLKTHIKTKHS   27 (30)
T ss_dssp             CCCCSSSSCCCSCSHHHHHHHHHHTS
T ss_pred             CccCCCCCCccCCHHHHHHHHHHHcc
Confidence            44555555555555555555555544

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=98.21  E-value=9.1e-07  Score=48.72  Aligned_cols=29  Identities=31%  Similarity=0.770  Sum_probs=24.7

Q ss_pred             CccccccchhccCChHHHHHHHHHhCCCC
Q psy11588        403 QKSICDVCGKEFKMKKRLKEHMAVHTTDR  431 (459)
Q Consensus       403 ~~~~C~~C~~~f~~~~~l~~H~~~H~~~~  431 (459)
                      +||.|++|++.|...+.|..|+++|++++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~k   29 (29)
T 1ard_A            1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK   29 (29)
T ss_dssp             CCCBCTTTCCBCSSHHHHHHHHHHHSCCC
T ss_pred             CCeECCCCCcccCCHHHHHHHHHHhcCCC
Confidence            47889999999999999999999888763

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=97.52  E-value=1.7e-07  Score=52.31  Aligned_cols=28  Identities=32%  Similarity=0.713  Sum_probs=17.5

Q ss_pred             CCcccCccccccCChHHHHHHHHHhcCC
Q psy11588        431 RPFVCDMCPSAFKLKKHLQQHYKVHLKK  458 (459)
Q Consensus       431 ~~~~C~~C~~~f~~~~~l~~H~~~H~~~  458 (459)
                      +||.|+.|++.|.+...|..|+++|+++
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~h~~~   29 (30)
T 2lvr_A            2 KPYVCIHCQRQFADPGALQRHVRIHTGE   29 (30)
Confidence            4566666666666666666666666554

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.19  E-value=7.7e-07  Score=49.46  Aligned_cols=30  Identities=30%  Similarity=0.628  Sum_probs=25.8

Q ss_pred             CCccccccchhccCChHHHHHHHHHhCCCC
Q psy11588        402 RQKSICDVCGKEFKMKKRLKEHMAVHTTDR  431 (459)
Q Consensus       402 ~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~  431 (459)
                      ++||.|+.|++.|.....|..|+++|++++
T Consensus         1 ~k~~~C~~C~~~f~~~~~l~~H~~~h~~~k   30 (30)
T 2m0d_A            1 MKPYQCDYCGRSFSDPTSKMRHLETHDTDK   30 (30)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHTTCCCC
T ss_pred             CcCccCCCCCcccCCHHHHHHHHHHhccCC
Confidence            368899999999999999999999988764

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=98.18  E-value=1.1e-06  Score=48.84  Aligned_cols=30  Identities=17%  Similarity=0.318  Sum_probs=25.7

Q ss_pred             CccccccchhccCChHHHHHHHHHhCCCCC
Q psy11588        403 QKSICDVCGKEFKMKKRLKEHMAVHTTDRP  432 (459)
Q Consensus       403 ~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~  432 (459)
                      +||.|++|++.|...+.|..|+++|+++++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~h~~~~~   30 (30)
T 1klr_A            1 KTYQCQYCEFRSADSSNLKTHIKTKHSKEK   30 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHTSSCC
T ss_pred             CCccCCCCCCccCCHHHHHHHHHHHccCCC
Confidence            468899999999999999999999988764

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=98.17  E-value=7.1e-07  Score=48.27  Aligned_cols=26  Identities=31%  Similarity=0.726  Sum_probs=15.3

Q ss_pred             CcccCccccccCChHHHHHHHHHhcC
Q psy11588        432 PFVCDMCPSAFKLKKHLQQHYKVHLK  457 (459)
Q Consensus       432 ~~~C~~C~~~f~~~~~l~~H~~~H~~  457 (459)
                      ||.|++|++.|.+...|..|+++|++
T Consensus         1 ~~~C~~C~k~f~~~~~l~~H~~~h~~   26 (27)
T 1znf_A            1 XYKCGLCERSFVEKSALSRHQRVHKN   26 (27)
T ss_dssp             -CBCSSSCCBCSSHHHHHHHGGGTCC
T ss_pred             CccCCCCCCcCCCHHHHHHHHHHcCC
Confidence            45566666666666666666666554

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=98.17  E-value=6.9e-07  Score=49.25  Aligned_cols=29  Identities=28%  Similarity=0.523  Sum_probs=25.2

Q ss_pred             CccccccchhccCChHHHHHHHHHhCCCC
Q psy11588        403 QKSICDVCGKEFKMKKRLKEHMAVHTTDR  431 (459)
Q Consensus       403 ~~~~C~~C~~~f~~~~~l~~H~~~H~~~~  431 (459)
                      +||.|+.||+.|...+.|..|+++|++++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   29 (29)
T 1rik_A            1 YKFACPECPKRFMRSDHLTLHILLHENKK   29 (29)
T ss_dssp             CCEECSSSSCEESCSHHHHHHHTGGGSCC
T ss_pred             CCccCCCCCchhCCHHHHHHHHHHhcCCC
Confidence            47899999999999999999999998764

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=98.16  E-value=2.7e-07  Score=52.49  Aligned_cols=27  Identities=19%  Similarity=0.421  Sum_probs=26.0

Q ss_pred             Cceeecccchhhccccccchhhhhccc
Q psy11588          1 MVWTCCKCIAKYTSRSHLSLHLLSHSS   27 (459)
Q Consensus         1 ~~~~C~~C~~~f~~~~~l~~H~~~h~~   27 (459)
                      ++|.|++||+.|...+.|..|+++|.+
T Consensus         1 kp~~C~~C~k~f~~~~~L~~H~~~H~~   27 (32)
T 2kfq_A            1 YAFACPACPKRFMRSDALSKHIKTAFI   27 (32)
T ss_dssp             CCSSSSSSCTTHHHHHTTSSSTTSSSS
T ss_pred             CCCCCCCCCcccCCHHHHHHHHHHHcc
Confidence            689999999999999999999999988

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=98.14  E-value=1.6e-06  Score=50.28  Aligned_cols=30  Identities=23%  Similarity=0.309  Sum_probs=26.7

Q ss_pred             hCCCCCcccCccccccCChHHHHHHHHHhc
Q psy11588        427 HTTDRPFVCDMCPSAFKLKKHLQQHYKVHL  456 (459)
Q Consensus       427 H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~  456 (459)
                      +.+++||.|+.|+++|.+.++|.+|+..+-
T Consensus         3 ~~gekp~~C~~CgK~F~~~s~L~~H~py~C   32 (36)
T 1fv5_A            3 LLKPARFMCLPCGIAFSSPSTLEAHQAYYC   32 (36)
T ss_dssp             SSSCCCCEETTTTEECSCHHHHHHHHHHTS
T ss_pred             CCCccCeECCCCCCccCCHhHccCcCCeEC
Confidence            468999999999999999999999986543

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.12  E-value=1e-06  Score=48.50  Aligned_cols=29  Identities=31%  Similarity=0.724  Sum_probs=25.2

Q ss_pred             CccccccchhccCChHHHHHHHHHhCCCC
Q psy11588        403 QKSICDVCGKEFKMKKRLKEHMAVHTTDR  431 (459)
Q Consensus       403 ~~~~C~~C~~~f~~~~~l~~H~~~H~~~~  431 (459)
                      +||.|++|++.|.....|..|+++|++++
T Consensus         1 ~~~~C~~C~k~f~~~~~l~~H~~~H~~~k   29 (29)
T 2m0f_A            1 GPLKCRECGKQFTTSGNLKRHLRIHSGEK   29 (29)
T ss_dssp             CCEECTTTSCEESCHHHHHHHHHHHHTCC
T ss_pred             CCccCCCCCCccCChhHHHHHHHHhcCCC
Confidence            47899999999999999999999998764

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.11  E-value=2.8e-06  Score=57.07  Aligned_cols=31  Identities=23%  Similarity=0.348  Sum_probs=18.9

Q ss_pred             hCCCCCcccCccccccCChHHHHHHHHHhcC
Q psy11588        427 HTTDRPFVCDMCPSAFKLKKHLQQHYKVHLK  457 (459)
Q Consensus       427 H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~  457 (459)
                      +.+++||.|.+|++.|.+...|.+|+++|++
T Consensus         8 ~~~ekpy~C~~CgK~F~~~s~L~~H~r~Htg   38 (66)
T 2epp_A            8 LREAGILPCGLCGKVFTDANRLRQHEAQHGV   38 (66)
T ss_dssp             CCCCCCCCCTTTCCCCSCHHHHHHHHHHHTT
T ss_pred             CCCccCcCCCCCCCccCCHHHHHhhhhhhCC
Confidence            3455666666666666666666666666654

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.10  E-value=1.2e-06  Score=48.20  Aligned_cols=29  Identities=31%  Similarity=0.666  Sum_probs=24.8

Q ss_pred             CccccccchhccCChHHHHHHHHHhCCCC
Q psy11588        403 QKSICDVCGKEFKMKKRLKEHMAVHTTDR  431 (459)
Q Consensus       403 ~~~~C~~C~~~f~~~~~l~~H~~~H~~~~  431 (459)
                      +||.|+.|++.|.....|..|+++|++++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~~   29 (29)
T 2m0e_A            1 KEHKCPHCDKKFNQVGNLKAHLKIHIADG   29 (29)
T ss_dssp             CCCCCSSCCCCCCTTTHHHHHHHHHHSCC
T ss_pred             CCCcCCCCCcccCCHHHHHHHHHHhccCC
Confidence            47889999999999999999999888764

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=98.10  E-value=1.5e-06  Score=48.76  Aligned_cols=29  Identities=31%  Similarity=0.710  Sum_probs=24.7

Q ss_pred             Cccccc--cchhccCChHHHHHHHHHhCCCC
Q psy11588        403 QKSICD--VCGKEFKMKKRLKEHMAVHTTDR  431 (459)
Q Consensus       403 ~~~~C~--~C~~~f~~~~~l~~H~~~H~~~~  431 (459)
                      +||.|+  .||+.|...+.|..|+++|++++
T Consensus         1 kp~~C~~~~C~k~f~~~~~L~~H~~~H~~~k   31 (31)
T 1sp2_A            1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK   31 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTSCCC
T ss_pred             CCcCCcCCCCCcccCCHhHHHHHHHHhcCCC
Confidence            478897  89999999999999999988764

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.38  E-value=4e-07  Score=50.31  Aligned_cols=29  Identities=31%  Similarity=0.649  Sum_probs=25.2

Q ss_pred             CccccccchhccCChHHHHHHHHHhCCCC
Q psy11588        403 QKSICDVCGKEFKMKKRLKEHMAVHTTDR  431 (459)
Q Consensus       403 ~~~~C~~C~~~f~~~~~l~~H~~~H~~~~  431 (459)
                      +||.|++|++.|...+.|..|+++|++++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   29 (29)
T 2lvt_A            1 KPCQCVMCGKAFTQASSLIAHVRQHTGEK   29 (29)
Confidence            47899999999999999999999988764

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.09  E-value=1.5e-06  Score=46.93  Aligned_cols=27  Identities=15%  Similarity=0.404  Sum_probs=23.0

Q ss_pred             CCccccccchhccCChHHHHHHHHHhC
Q psy11588        402 RQKSICDVCGKEFKMKKRLKEHMAVHT  428 (459)
Q Consensus       402 ~~~~~C~~C~~~f~~~~~l~~H~~~H~  428 (459)
                      ++||.|+.||+.|...+.|..|+++|+
T Consensus         1 ek~~~C~~C~k~f~~~~~l~~H~~~H~   27 (27)
T 2kvh_A            1 EKPFSCSLCPQRSRDFSAMTKHLRTHG   27 (27)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHHHCC
T ss_pred             CcCccCCCcChhhCCHHHHHHHHHHcc
Confidence            367899999999999999999988874

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.09  E-value=2e-06  Score=48.68  Aligned_cols=30  Identities=27%  Similarity=0.452  Sum_probs=25.8

Q ss_pred             CCccccc--cchhccCChHHHHHHHHHhCCCC
Q psy11588        402 RQKSICD--VCGKEFKMKKRLKEHMAVHTTDR  431 (459)
Q Consensus       402 ~~~~~C~--~C~~~f~~~~~l~~H~~~H~~~~  431 (459)
                      ++||.|+  .|++.|...+.|..|+++|++++
T Consensus         1 ek~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~   32 (32)
T 1zfd_A            1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQEKA   32 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGTCCC
T ss_pred             CCCCcCcCCCCCCccCCHHHHHHHHHHccCCC
Confidence            3689998  89999999999999999998764

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.07  E-value=1.4e-06  Score=47.58  Aligned_cols=28  Identities=39%  Similarity=0.806  Sum_probs=23.5

Q ss_pred             CCccccccchhccCChHHHHHHHHHhCC
Q psy11588        402 RQKSICDVCGKEFKMKKRLKEHMAVHTT  429 (459)
Q Consensus       402 ~~~~~C~~C~~~f~~~~~l~~H~~~H~~  429 (459)
                      ++||.|+.|++.|.....|..|+++|++
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~h~~   28 (28)
T 2kvf_A            1 MRPYSCSVCGKRFSLKHQMETHYRVHTG   28 (28)
T ss_dssp             CCSEECSSSCCEESCHHHHHHHHTTSCC
T ss_pred             CcCccCCCCCcccCCHHHHHHHHHhcCC
Confidence            3678899999999999999999888764

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=98.07  E-value=1.4e-06  Score=47.01  Aligned_cols=27  Identities=30%  Similarity=0.589  Sum_probs=20.9

Q ss_pred             ccccccchhccCChHHHHHHHHHhCCC
Q psy11588        404 KSICDVCGKEFKMKKRLKEHMAVHTTD  430 (459)
Q Consensus       404 ~~~C~~C~~~f~~~~~l~~H~~~H~~~  430 (459)
                      ||.|++|++.|...+.|..|+++|+++
T Consensus         1 ~~~C~~C~k~f~~~~~l~~H~~~h~~~   27 (27)
T 1znf_A            1 XYKCGLCERSFVEKSALSRHQRVHKNX   27 (27)
T ss_dssp             -CBCSSSCCBCSSHHHHHHHGGGTCC-
T ss_pred             CccCCCCCCcCCCHHHHHHHHHHcCCC
Confidence            578888888888888888888888763

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.07  E-value=1.4e-06  Score=48.44  Aligned_cols=27  Identities=30%  Similarity=0.700  Sum_probs=16.3

Q ss_pred             CcccCccccccCChHHHHHH-HHHhcCC
Q psy11588        432 PFVCDMCPSAFKLKKHLQQH-YKVHLKK  458 (459)
Q Consensus       432 ~~~C~~C~~~f~~~~~l~~H-~~~H~~~  458 (459)
                      ||.|+.|++.|.+.+.|..| +++|.++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~~H~~~   29 (30)
T 1paa_A            2 AYACGLCNRAFTRRDLLIRHAQKIHSGN   29 (30)
T ss_dssp             CSBCTTTCCBCSSSHHHHHHHTTTSCCC
T ss_pred             CcCCcccCcccCChHHHHHHHHHHccCC
Confidence            56666666666666666666 4566554

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.06  E-value=1.3e-06  Score=47.29  Aligned_cols=27  Identities=19%  Similarity=0.358  Sum_probs=23.2

Q ss_pred             CCccccccchhccCChHHHHHHHHHhC
Q psy11588        402 RQKSICDVCGKEFKMKKRLKEHMAVHT  428 (459)
Q Consensus       402 ~~~~~C~~C~~~f~~~~~l~~H~~~H~  428 (459)
                      ++||.|+.||+.|...+.|..|+++|+
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~H~   27 (27)
T 2kvg_A            1 AAPYRCPLCRAGCPSLASMQAHMRGHS   27 (27)
T ss_dssp             CCTEEETTTTEEESCHHHHHHHHTTCC
T ss_pred             CcCcCCCCCCcccCCHHHHHHHHHhcC
Confidence            368999999999999999999988874

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=97.31  E-value=5.8e-07  Score=50.03  Aligned_cols=29  Identities=24%  Similarity=0.607  Sum_probs=25.6

Q ss_pred             CccccccchhccCChHHHHHHHHHhCCCC
Q psy11588        403 QKSICDVCGKEFKMKKRLKEHMAVHTTDR  431 (459)
Q Consensus       403 ~~~~C~~C~~~f~~~~~l~~H~~~H~~~~  431 (459)
                      +||.|+.||+.|...+.|..|+++|++++
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~h~~~k   30 (30)
T 2lvr_A            2 KPYVCIHCQRQFADPGALQRHVRIHTGEK   30 (30)
Confidence            57999999999999999999999988763

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.28  E-value=6.8e-07  Score=47.88  Aligned_cols=24  Identities=33%  Similarity=0.827  Sum_probs=13.9

Q ss_pred             CcccCccccccCChHHHHHHHHHh
Q psy11588        432 PFVCDMCPSAFKLKKHLQQHYKVH  455 (459)
Q Consensus       432 ~~~C~~C~~~f~~~~~l~~H~~~H  455 (459)
                      ||.|+.||+.|.+.+.|..|+++|
T Consensus         2 p~~C~~C~k~f~~~~~l~~H~~~H   25 (26)
T 2lvu_A            2 PYVCERCGKRFVQSSQLANHIRHH   25 (26)
Confidence            455555555555555555555554

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.96  E-value=2e-06  Score=53.86  Aligned_cols=34  Identities=26%  Similarity=0.469  Sum_probs=30.7

Q ss_pred             hcCCCCccccc--cchhccCChHHHHHHHHHhCCCC
Q psy11588        398 AHTIRQKSICD--VCGKEFKMKKRLKEHMAVHTTDR  431 (459)
Q Consensus       398 ~H~~~~~~~C~--~C~~~f~~~~~l~~H~~~H~~~~  431 (459)
                      .|++++||.|+  .||+.|...+.|..|+++|++++
T Consensus        12 ~H~~~k~~~C~~~~C~k~F~~~~~L~~H~~~H~~ek   47 (47)
T 1ncs_A           12 KEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             EEETTTEEECCCTTCCCEECSSSSHHHHHHHHTTTC
T ss_pred             ccCCCCCeECCCCCCCCccCCHHHHHHHHHHccCCC
Confidence            58889999996  79999999999999999999874

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.18  E-value=1.2e-06  Score=46.91  Aligned_cols=26  Identities=23%  Similarity=0.576  Sum_probs=24.1

Q ss_pred             Cceeecccchhhccccccchhhhhcc
Q psy11588          1 MVWTCCKCIAKYTSRSHLSLHLLSHS   26 (459)
Q Consensus         1 ~~~~C~~C~~~f~~~~~l~~H~~~h~   26 (459)
                      ++|.|++||+.|.+.+.|..|+++|.
T Consensus         1 kp~~C~~C~k~f~~~~~l~~H~~~H~   26 (26)
T 2lvu_A            1 KPYVCERCGKRFVQSSQLANHIRHHD   26 (26)
Confidence            68999999999999999999999873

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.94  E-value=3.1e-06  Score=46.92  Aligned_cols=29  Identities=21%  Similarity=0.566  Sum_probs=23.0

Q ss_pred             CccccccchhccCChHHHHHH-HHHhCCCC
Q psy11588        403 QKSICDVCGKEFKMKKRLKEH-MAVHTTDR  431 (459)
Q Consensus       403 ~~~~C~~C~~~f~~~~~l~~H-~~~H~~~~  431 (459)
                      +||.|+.|++.|.+.+.|..| +++|++++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~~H~~~~   30 (30)
T 1paa_A            1 KAYACGLCNRAFTRRDLLIRHAQKIHSGNL   30 (30)
T ss_dssp             CCSBCTTTCCBCSSSHHHHHHHTTTSCCCC
T ss_pred             CCcCCcccCcccCChHHHHHHHHHHccCCC
Confidence            368888888888888888888 57887753

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=97.87  E-value=6.1e-06  Score=45.21  Aligned_cols=26  Identities=31%  Similarity=0.731  Sum_probs=16.3

Q ss_pred             CcccC--ccccccCChHHHHHHHHHhcC
Q psy11588        432 PFVCD--MCPSAFKLKKHLQQHYKVHLK  457 (459)
Q Consensus       432 ~~~C~--~C~~~f~~~~~l~~H~~~H~~  457 (459)
                      ||.|+  .|++.|.+.+.|..|+++|++
T Consensus         2 ~~~C~~~~C~k~f~~~~~l~~H~~~H~~   29 (29)
T 2ab3_A            2 VYVCHFENCGRSFNDRRKLNRHKKIHTG   29 (29)
T ss_dssp             CEEECSTTTCEEESSHHHHHHHHGGGTC
T ss_pred             CCCCcCCcCcCccCCHHHHHHHHHHhCC
Confidence            56666  666666666666666666653

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=97.69  E-value=1.6e-05  Score=43.43  Aligned_cols=27  Identities=30%  Similarity=0.765  Sum_probs=22.9

Q ss_pred             Cccccc--cchhccCChHHHHHHHHHhCC
Q psy11588        403 QKSICD--VCGKEFKMKKRLKEHMAVHTT  429 (459)
Q Consensus       403 ~~~~C~--~C~~~f~~~~~l~~H~~~H~~  429 (459)
                      +||.|+  .|++.|...+.|..|+++|++
T Consensus         1 k~~~C~~~~C~k~f~~~~~l~~H~~~H~~   29 (29)
T 2ab3_A            1 MVYVCHFENCGRSFNDRRKLNRHKKIHTG   29 (29)
T ss_dssp             CCEEECSTTTCEEESSHHHHHHHHGGGTC
T ss_pred             CCCCCcCCcCcCccCCHHHHHHHHHHhCC
Confidence            368899  999999999999999988864

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=97.51  E-value=0.00016  Score=48.18  Aligned_cols=45  Identities=18%  Similarity=0.349  Sum_probs=21.6

Q ss_pred             chhccCChHHHHHHHH-HhCCCC------CcccC--ccccccCChHHHHHHHHH
Q psy11588        410 CGKEFKMKKRLKEHMA-VHTTDR------PFVCD--MCPSAFKLKKHLQQHYKV  454 (459)
Q Consensus       410 C~~~f~~~~~l~~H~~-~H~~~~------~~~C~--~C~~~f~~~~~l~~H~~~  454 (459)
                      |++.|.+...|..|+. .|.+.+      +|.|.  .|++.+.....|..|+++
T Consensus         9 C~~~f~~~~~l~~Hv~~~Hv~~~~~~~~~~~~C~W~~C~~~~~~~~~L~~Hir~   62 (64)
T 1zw8_A            9 CPESASSLFDLQRHLLKDHVSQDFKHPMEPLACNWEDCDFLGDDTASIVNHINA   62 (64)
T ss_dssp             CCCCCSSHHHHHHHHHHHSCCCCCCCSSCCEECCCSSCCCEESSHHHHHHHHHH
T ss_pred             CCCcCCCHHHHHHHHHhhccCcccCCCCCCCEeeCCCCcCCCCChHHHHhhccc
Confidence            4444444444444442 343332      45553  455555555555555554

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=97.50  E-value=0.00013  Score=48.57  Aligned_cols=50  Identities=14%  Similarity=0.238  Sum_probs=43.9

Q ss_pred             CCCCCcCCChHHHHHHHHhhcCCCC------ccccc--cchhccCChHHHHHHHHHhC
Q psy11588        379 SYCGNTYKNPKSLESHIRYAHTIRQ------KSICD--VCGKEFKMKKRLKEHMAVHT  428 (459)
Q Consensus       379 ~~C~~~f~~~~~l~~H~~~~H~~~~------~~~C~--~C~~~f~~~~~l~~H~~~H~  428 (459)
                      ..|++.|.+...|..|+...|.+.+      +|.|.  .|++.+.....|..|++..+
T Consensus         7 ~~C~~~f~~~~~l~~Hv~~~Hv~~~~~~~~~~~~C~W~~C~~~~~~~~~L~~Hir~~H   64 (64)
T 1zw8_A            7 KECPESASSLFDLQRHLLKDHVSQDFKHPMEPLACNWEDCDFLGDDTASIVNHINAQH   64 (64)
T ss_dssp             TTCCCCCSSHHHHHHHHHHHSCCCCCCCSSCCEECCCSSCCCEESSHHHHHHHHHHHC
T ss_pred             CCCCCcCCCHHHHHHHHHhhccCcccCCCCCCCEeeCCCCcCCCCChHHHHhhccccC
Confidence            3599999999999999977887665      79997  89999999999999998753

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=96.67  E-value=0.0039  Score=47.92  Aligned_cols=75  Identities=19%  Similarity=0.336  Sum_probs=47.9

Q ss_pred             CcccCCCCCcCCChHHHHHHHHh-hcCCC-Cccccccc------hhccCChHHHHHHHHHhCCCCCcccCccccccCChH
Q psy11588        375 NVVCSYCGNTYKNPKSLESHIRY-AHTIR-QKSICDVC------GKEFKMKKRLKEHMAVHTTDRPFVCDMCPSAFKLKK  446 (459)
Q Consensus       375 ~~~C~~C~~~f~~~~~l~~H~~~-~H~~~-~~~~C~~C------~~~f~~~~~l~~H~~~H~~~~~~~C~~C~~~f~~~~  446 (459)
                      ++.|.+|...|.+...+..|... .|... +.+.+...      ++.+....    +...+.+.+.|.|.+|+++|.+..
T Consensus        32 ~~~C~~C~v~~~S~s~~~~H~~gkkH~~~v~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~C~~C~~~f~s~~  107 (127)
T 1zu1_A           32 DTQCKVCSAVLISESQKLAHYQSRKHANKVRRYMAINQGEDSVPAKKFKAAP----AEISDGEDRSKCCPVCNMTFSSPV  107 (127)
T ss_dssp             SSEETTTTEECCSHHHHHHHHHCHHHHHHHHHHHHHTTCCCCCSCCCCSCCS----SCCSSCCCTTTEETTTTEECSSHH
T ss_pred             CCcCcCCCCEeCCHHHHHHHHCcHHHHHHHHHHhcccCcccCCCCCccCCCc----cccccCCCCCeEcCCCCCEeCCHH
Confidence            67889999999888888888731 23211 22222100      12222111    112345667899999999999999


Q ss_pred             HHHHHHH
Q psy11588        447 HLQQHYK  453 (459)
Q Consensus       447 ~l~~H~~  453 (459)
                      .|..|+.
T Consensus       108 ~~~~H~~  114 (127)
T 1zu1_A          108 VAESHYI  114 (127)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHC
Confidence            9999984

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=96.38  E-value=0.0031  Score=51.57  Aligned_cols=82  Identities=17%  Similarity=0.283  Sum_probs=49.7

Q ss_pred             Cccc--ccccccccccchHHHHHhhhCCCCcccCCCCCcCCChHHHHHHHHhhcCCCCccccccchhccCChHHHHHHHH
Q psy11588        348 KYVC--ETCGASFVQWGSLNQHNLVHTAVNVVCSYCGNTYKNPKSLESHIRYAHTIRQKSICDVCGKEFKMKKRLKEHMA  425 (459)
Q Consensus       348 ~~~C--~~C~~~f~~~~~l~~H~~~h~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~  425 (459)
                      ...|  .-|+... ....|..|...-.-.+..|+.|+..+ ....|..|+. ..-..++-.|+.|+..+. ...|..|..
T Consensus        82 ~v~C~n~GC~~~~-~~~~l~~H~~~C~~~~v~C~~C~~~~-~r~~l~~H~~-~~C~~r~~~C~~C~~~~~-~~~l~~H~~  157 (170)
T 3hcs_A           82 MVKCPNEGCLHKM-ELRHLEDHQAHCEFALMDCPQCQRPF-QKFHINIHIL-KDCPRRQVSCDNCAASMA-FEDKEIHDQ  157 (170)
T ss_dssp             EEECCSTTCCCEE-EGGGHHHHHTTCTTSEEECTTTCCEE-EGGGHHHHHH-HTCTTCEEECTTTCCEEE-GGGHHHHHT
T ss_pred             ccCCCCCCCCcee-cHhHHHHHHhcCCceeeECCCCChHH-HHHHHHHHhh-hhCCCCCeECCCCCCccC-HHHHHhHHH
Confidence            3455  3465544 34456667654444456777777776 5566777776 444556677888877664 466788888


Q ss_pred             HhCCCCCc
Q psy11588        426 VHTTDRPF  433 (459)
Q Consensus       426 ~H~~~~~~  433 (459)
                      ++.|+.++
T Consensus       158 ~~~~~~~~  165 (170)
T 3hcs_A          158 NCPLALEH  165 (170)
T ss_dssp             TCCC----
T ss_pred             hCcChhhh
Confidence            87776654

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=96.10  E-value=0.0011  Score=49.93  Aligned_cols=27  Identities=19%  Similarity=0.367  Sum_probs=14.4

Q ss_pred             hCCCCCcccCccccccCChHHHHHHHH
Q psy11588        427 HTTDRPFVCDMCPSAFKLKKHLQQHYK  453 (459)
Q Consensus       427 H~~~~~~~C~~C~~~f~~~~~l~~H~~  453 (459)
                      |+|++||.|..|++.|.+...|..|++
T Consensus        45 ~tGekpfyC~~C~K~F~~~~~L~~H~r   71 (124)
T 1zr9_A           45 LPGGGLHRCLACARYFIDSTNLKTHFR   71 (124)
T ss_dssp             SGGGGCSEETTTTEECSSHHHHHHHTT
T ss_pred             CCCCcceEcccCcchhCCHHHHHHHHh
Confidence            445555555555555555555555543

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=95.76  E-value=0.003  Score=51.70  Aligned_cols=53  Identities=19%  Similarity=0.328  Sum_probs=27.3

Q ss_pred             CccccccchhccCChHHHHHHHHHhCCCCCcccCccccccCChHHHHHHHHHhcC
Q psy11588        403 QKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVHLK  457 (459)
Q Consensus       403 ~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~  457 (459)
                      .+..|+.|+..+ .+..|..|+...-..++-.|+.|+..+ ....|..|..++.|
T Consensus       109 ~~v~C~~C~~~~-~r~~l~~H~~~~C~~r~~~C~~C~~~~-~~~~l~~H~~~~~~  161 (170)
T 3hcs_A          109 ALMDCPQCQRPF-QKFHINIHILKDCPRRQVSCDNCAASM-AFEDKEIHDQNCPL  161 (170)
T ss_dssp             SEEECTTTCCEE-EGGGHHHHHHHTCTTCEEECTTTCCEE-EGGGHHHHHTTCCC
T ss_pred             eeeECCCCChHH-HHHHHHHHhhhhCCCCCeECCCCCCcc-CHHHHHhHHHhCcC
Confidence            344555555554 444555555555555555555555544 23445555555544

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=95.23  E-value=0.0035  Score=47.22  Aligned_cols=29  Identities=21%  Similarity=0.252  Sum_probs=25.3

Q ss_pred             hcCCCCccccccchhccCChHHHHHHHHH
Q psy11588        398 AHTIRQKSICDVCGKEFKMKKRLKEHMAV  426 (459)
Q Consensus       398 ~H~~~~~~~C~~C~~~f~~~~~l~~H~~~  426 (459)
                      .|++.+||.|..|++.|.+.+.|..|+++
T Consensus        44 d~tGekpfyC~~C~K~F~~~~~L~~H~rs   72 (124)
T 1zr9_A           44 DLPGGGLHRCLACARYFIDSTNLKTHFRS   72 (124)
T ss_dssp             SSGGGGCSEETTTTEECSSHHHHHHHTTC
T ss_pred             cCCCCcceEcccCcchhCCHHHHHHHHhh
Confidence            57788899999999999999999999764

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.18  E-value=0.011  Score=35.17  Aligned_cols=22  Identities=32%  Similarity=0.871  Sum_probs=11.2

Q ss_pred             ccccccchhccCChHHHHHHHH
Q psy11588        404 KSICDVCGKEFKMKKRLKEHMA  425 (459)
Q Consensus       404 ~~~C~~C~~~f~~~~~l~~H~~  425 (459)
                      +|.|+.|+..|.....|+.||+
T Consensus        12 ~~~CPrCn~~f~~~~sLr~Hmk   33 (49)
T 2e72_A           12 RKICPRCNAQFRVTEALRGHMC   33 (49)
T ss_dssp             CCCCTTTCCCCSSHHHHHHHHH
T ss_pred             ceeCCcccccccchHHHHhhhh
Confidence            3445555555555555555544

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.14  E-value=0.013  Score=34.92  Aligned_cols=25  Identities=20%  Similarity=0.476  Sum_probs=23.0

Q ss_pred             CCcccCccccccCChHHHHHHHHHh
Q psy11588        431 RPFVCDMCPSAFKLKKHLQQHYKVH  455 (459)
Q Consensus       431 ~~~~C~~C~~~f~~~~~l~~H~~~H  455 (459)
                      .+|.|+.|+..|.....|+.||+.-
T Consensus        11 ~~~~CPrCn~~f~~~~sLr~Hmkyc   35 (49)
T 2e72_A           11 GRKICPRCNAQFRVTEALRGHMCYC   35 (49)
T ss_dssp             SCCCCTTTCCCCSSHHHHHHHHHHH
T ss_pred             CceeCCcccccccchHHHHhhhhhc
Confidence            6799999999999999999999854

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=95.07  E-value=0.037  Score=42.41  Aligned_cols=23  Identities=22%  Similarity=0.599  Sum_probs=17.8

Q ss_pred             CCccccccccccCCHHHHHHHHH
Q psy11588        290 KDHCCHICKKVFLRYRNLVCHIK  312 (459)
Q Consensus       290 ~~~~C~~C~~~f~~~~~l~~H~~  312 (459)
                      +++.|.+|+..|.+...+..|..
T Consensus        31 ~~~~C~~C~v~~~S~s~~~~H~~   53 (127)
T 1zu1_A           31 SDTQCKVCSAVLISESQKLAHYQ   53 (127)
T ss_dssp             CSSEETTTTEECCSHHHHHHHHH
T ss_pred             CCCcCcCCCCEeCCHHHHHHHHC
Confidence            45778888888888888888873

>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}

Probab=94.06  E-value=0.044  Score=30.54  Aligned_cols=28  Identities=18%  Similarity=0.393  Sum_probs=22.4

Q ss_pred             CcccCCCCCcCCChHHHHHHHHhhcCCC
Q psy11588        375 NVVCSYCGNTYKNPKSLESHIRYAHTIR  402 (459)
Q Consensus       375 ~~~C~~C~~~f~~~~~l~~H~~~~H~~~  402 (459)
                      .|.||+|.+.|.+...|..|....|...
T Consensus         5 GFiCP~C~~~l~s~~~L~~Hye~~H~~~   32 (34)
T 3mjh_B            5 GFICPQCMKSLGSADELFKHYEAVHDAG   32 (34)
T ss_dssp             EEECTTTCCEESSHHHHHHHHHHHTSSS
T ss_pred             ccCCcHHHHHcCCHHHHHHHHHhccccC
Confidence            5788888888888888888888777643

>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}

Probab=92.97  E-value=0.081  Score=29.46  Aligned_cols=25  Identities=32%  Similarity=0.503  Sum_probs=15.6

Q ss_pred             ccccccccccCCHHHHHHHHHHHcC
Q psy11588        292 HCCHICKKVFLRYRNLVCHIKAVHE  316 (459)
Q Consensus       292 ~~C~~C~~~f~~~~~l~~H~~~~h~  316 (459)
                      |.|++|.+.+.+...|..|....|.
T Consensus         6 FiCP~C~~~l~s~~~L~~Hye~~H~   30 (34)
T 3mjh_B            6 FICPQCMKSLGSADELFKHYEAVHD   30 (34)
T ss_dssp             EECTTTCCEESSHHHHHHHHHHHTS
T ss_pred             cCCcHHHHHcCCHHHHHHHHHhccc
Confidence            5666666666666666666665554

>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...

Probab=88.93  E-value=0.27  Score=30.57  Aligned_cols=44  Identities=16%  Similarity=0.345  Sum_probs=24.3

Q ss_pred             Cceeecccchhhccccccchhhhhccccccccccccccchhccc
Q psy11588          1 MVWTCCKCIAKYTSRSHLSLHLLSHSSDADEIKQELSCEQCGCS   44 (459)
Q Consensus         1 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~~~~C~~C~~~   44 (459)
                      +.|.|.+||.++.-...-...-.--....++....+.|++|+..
T Consensus         1 ~~~~C~~CGyvYd~~~Gdp~~gi~pGt~f~~lP~dw~CP~Cg~~   44 (52)
T 1yk4_A            1 AKLSCKICGYIYDEDEGDPDNGISPGTKFEDLPDDWVCPLCGAP   44 (52)
T ss_dssp             CEEEESSSSCEEETTTCBGGGTBCTTCCGGGSCTTCBCTTTCCB
T ss_pred             CcEEeCCCCeEECCCcCCcccCcCCCCCHhHCCCCCcCCCCCCC
Confidence            46889999988876544433322221112222345677777764

>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1

Probab=88.44  E-value=0.26  Score=29.64  Aligned_cols=37  Identities=24%  Similarity=0.573  Sum_probs=19.7

Q ss_pred             Cceeecccchhhccccccchhhhhccccccccccccccchhccc
Q psy11588          1 MVWTCCKCIAKYTSRSHLSLHLLSHSSDADEIKQELSCEQCGCS   44 (459)
Q Consensus         1 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~~~~C~~C~~~   44 (459)
                      +.|.|.+||.++.-...-.       ...++....+.|++||..
T Consensus         3 ~~y~C~vCGyvyd~~~Gd~-------t~f~~lP~dw~CP~Cg~~   39 (46)
T 6rxn_A            3 QKYVCNVCGYEYDPAEHDN-------VPFDQLPDDWCCPVCGVS   39 (46)
T ss_dssp             CCEEETTTCCEECGGGGTT-------CCGGGSCTTCBCTTTCCB
T ss_pred             CEEECCCCCeEEeCCcCCC-------cchhhCCCCCcCcCCCCc
Confidence            3578888888876432211       111111334677777754

>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...

Probab=87.75  E-value=0.45  Score=29.75  Aligned_cols=44  Identities=20%  Similarity=0.409  Sum_probs=24.2

Q ss_pred             Cceeecccchhhccccccchhhhhccccccccccccccchhccc
Q psy11588          1 MVWTCCKCIAKYTSRSHLSLHLLSHSSDADEIKQELSCEQCGCS   44 (459)
Q Consensus         1 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~~~~C~~C~~~   44 (459)
                      +.|.|.+||.++.-...-...-..-....++....+.|+.|+..
T Consensus         2 ~~y~C~vCGyvYd~~~Gdp~~gi~pGt~fe~lP~dw~CP~Cg~~   45 (54)
T 4rxn_A            2 KKYTCTVCGYIYDPEDGDPDDGVNPGTDFKDIPDDWVCPLCGVG   45 (54)
T ss_dssp             CCEEETTTCCEECTTTCBGGGTBCTTCCGGGSCTTCBCTTTCCB
T ss_pred             CceECCCCCeEECCCcCCcccCcCCCCChhHCCCCCcCcCCCCc
Confidence            35889999988876544433322111112222345677777764

>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}

Probab=86.95  E-value=0.36  Score=30.41  Aligned_cols=44  Identities=20%  Similarity=0.494  Sum_probs=23.4

Q ss_pred             Cceeecccchhhccccccchhhhhccccccccccccccchhccc
Q psy11588          1 MVWTCCKCIAKYTSRSHLSLHLLSHSSDADEIKQELSCEQCGCS   44 (459)
Q Consensus         1 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~~~~C~~C~~~   44 (459)
                      +.|.|.+||.++.-...-...-.--....++....+.|++|+..
T Consensus         2 ~~y~C~~CGyvYd~~~Gdp~~gi~pGt~f~~lP~dw~CP~Cga~   45 (55)
T 2v3b_B            2 RKWQCVVCGFIYDEALGLPEEGIPAGTRWEDIPADWVCPDCGVG   45 (55)
T ss_dssp             CEEEETTTCCEEETTTCBTTTTBCTTCCGGGSCTTCCCTTTCCC
T ss_pred             CcEEeCCCCeEECCCcCCcccCcCCCCChhHCCCCCcCCCCCCC
Confidence            35888888888876544333222111111222344677777764

>2elu_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2elw_A

Probab=86.87  E-value=0.47  Score=25.35  Aligned_cols=24  Identities=38%  Similarity=0.855  Sum_probs=16.7

Q ss_pred             cccccccccCCHHHHHHHHHHHcC
Q psy11588        293 CCHICKKVFLRYRNLVCHIKAVHE  316 (459)
Q Consensus       293 ~C~~C~~~f~~~~~l~~H~~~~h~  316 (459)
                      .|..|.+.+....+|..|++..|.
T Consensus        11 hcrfckkkysdvknlikhire~hd   34 (37)
T 2elu_A           11 HCRFCKKKYSDVKNLIKHIRDAHD   34 (37)
T ss_dssp             EETTTTEECSSHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcC
Confidence            367777777777777777776554

>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A

Probab=86.18  E-value=0.38  Score=29.92  Aligned_cols=43  Identities=16%  Similarity=0.469  Sum_probs=21.2

Q ss_pred             ceeecccchhhccccccchhhhhccccccccccccccchhccc
Q psy11588          2 VWTCCKCIAKYTSRSHLSLHLLSHSSDADEIKQELSCEQCGCS   44 (459)
Q Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~~~~C~~C~~~   44 (459)
                      .|.|.+||.++.-...-...-.--....++....+.|++|+..
T Consensus         3 ~y~C~~CGyvYd~~~Gdp~~gi~pGt~f~~lP~dw~CP~Cg~~   45 (52)
T 1e8j_A            3 IYVCTVCGYEYDPAKGDPDSGIKPGTKFEDLPDDWACPVCGAS   45 (52)
T ss_dssp             CEECSSSCCCCCTTTCCTTTTCCSSCCTTSSCTTCCCSSSCCC
T ss_pred             cEEeCCCCeEEcCCcCCcccCcCCCCchHHCCCCCcCCCCCCc
Confidence            5788888888765433322211111111122334667777653

>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}

Probab=85.79  E-value=0.41  Score=32.77  Aligned_cols=13  Identities=38%  Similarity=0.876  Sum_probs=7.8

Q ss_pred             cccccchhccccc
Q psy11588         34 QELSCEQCGCSLD   46 (459)
Q Consensus        34 ~~~~C~~C~~~f~   46 (459)
                      ..|.|.+||..+.
T Consensus        26 ~~y~C~vCGyvYD   38 (81)
T 2kn9_A           26 KLFRCIQCGFEYD   38 (81)
T ss_dssp             CEEEETTTCCEEE
T ss_pred             ceEEeCCCCEEEc
Confidence            3466666666554

>1fu9_A U-shaped transcriptional cofactor; zinc-finger, beta-hairpin + alpha-helix; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1jn7_A

Probab=84.62  E-value=0.86  Score=25.43  Aligned_cols=23  Identities=22%  Similarity=0.398  Sum_probs=13.6

Q ss_pred             CCcccCccccccCChHHHHHHHH
Q psy11588        431 RPFVCDMCPSAFKLKKHLQQHYK  453 (459)
Q Consensus       431 ~~~~C~~C~~~f~~~~~l~~H~~  453 (459)
                      .++.|..|+-+|.+..++..|.+
T Consensus         7 ~~~~C~~C~IsF~~l~ty~aHKk   29 (36)
T 1fu9_A            7 MKKYCSTCDISFNYVKTYLAHKQ   29 (36)
T ss_dssp             CCSEETTTTEECSSHHHHHHHHH
T ss_pred             CcCeeccccceehhhHHHhhhhe
Confidence            34556666666666666666654

>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}

Probab=83.38  E-value=0.59  Score=33.26  Aligned_cols=47  Identities=17%  Similarity=0.446  Sum_probs=35.9

Q ss_pred             cccchhccccccccccccCCccccc---hhhHhhhhHHHHHHHHhhhccC
Q psy11588         36 LSCEQCGCSLDFHSALYTKDVYHCA---DCEQVFLDKFVLELHLKIEHKD   82 (459)
Q Consensus        36 ~~C~~C~~~f~~~~~l~~~~~~~C~---~C~~~f~~~~~L~~H~~~h~~~   82 (459)
                      -.|+.|...+........+..|.|.   .|.++|.+..+|+.|+..-|..
T Consensus        38 k~Cp~C~~~V~rVe~~~~~~if~C~~~~~CkrtyLs~rdlqaHI~~~H~~   87 (101)
T 3vk6_A           38 KMCPGCSDPVQRIEQCTRGSLFMCSIVQGCKRTYLSQRDLQAHINHRHMR   87 (101)
T ss_dssp             CBCTTTCCBCSEEEEEEGGGCCCCCCCCCCCCCCSSHHHHHHHHHHHTTT
T ss_pred             CCCcCcCCeeeeeEEeccCCEEECCCCCCHHHHhcCHHHHHHHHHHHhhh
Confidence            4588888887776666667788888   4888888888888888765543

>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A

Probab=82.26  E-value=0.75  Score=30.60  Aligned_cols=43  Identities=12%  Similarity=0.315  Sum_probs=19.7

Q ss_pred             ceeecccchhhccccccchhhhhccccccccccccccchhccc
Q psy11588          2 VWTCCKCIAKYTSRSHLSLHLLSHSSDADEIKQELSCEQCGCS   44 (459)
Q Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~~~~C~~C~~~   44 (459)
                      .|.|.+||.++.-...-...-.--....++....+.|++|+..
T Consensus         7 ~y~C~vCGyiYd~~~Gdp~~gi~pGT~f~~lPddw~CP~Cga~   49 (70)
T 1dx8_A            7 KYECEACGYIYEPEKGDKFAGIPPGTPFVDLSDSFMCPACRSP   49 (70)
T ss_dssp             CEEETTTCCEECTTTCCTTTTCCSSCCGGGSCTTCBCTTTCCB
T ss_pred             eEEeCCCCEEEcCCCCCcccCcCCCCchhhCCCCCcCCCCCCC
Confidence            4677777777664433222211111111112334566666653

>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}

Probab=82.26  E-value=0.21  Score=33.49  Aligned_cols=52  Identities=21%  Similarity=0.344  Sum_probs=30.1

Q ss_pred             eecccCCcceeeehhHHhhhhhhccc-cccccccccccccc---cceeecCccchhhhhhh
Q psy11588         91 FVCKMCGHRLFMRLSDLRRHMQDYHC-EFHFDVESCAVSRL---QDITFPCEECKELCVLS  147 (459)
Q Consensus        91 ~~C~~C~~~~f~~~~~l~~H~~~h~~-~~~~~~~~c~~~~~---~~~~~~C~~C~~~f~~~  147 (459)
                      -+|++||..  .....|...|..-.. +..+.-.   ..|.   ....|+||.|++.|.-+
T Consensus         9 ~~~PlCG~~--L~W~eLIeQML~~en~~ei~kDr---~~Fl~~~e~F~FkCP~CgEEFyG~   64 (95)
T 2k5c_A            9 AKCPICGSP--LKWEELIEEMLIIENFEEIVKDR---ERFLAQVEEFVFKCPVCGEEFYGK   64 (95)
T ss_dssp             EECSSSCCE--ECHHHHHHHSTTCSTHHHHTTCH---HHHHHHHHHSEEECTTTCCEEETT
T ss_pred             ccCCcCCCc--cCHHHHHHHHHhhccHHHHHhhH---HHHHHHHHHHhhcCCCccHHHhcc
Confidence            479999954  567788888765321 1000000   0011   23679999999877543

>2k9h_A Glycoprotein; hantavirus, zinc finger, CCHC, metal binding protein; NMR {Andes virus}

Probab=81.73  E-value=0.51  Score=28.93  Aligned_cols=48  Identities=21%  Similarity=0.192  Sum_probs=38.7

Q ss_pred             cccchhhHhhhhHHHHHHHHhhhccCCCCCCCceeecccCCcceeeehhHHhhhhhh
Q psy11588         57 YHCADCEQVFLDKFVLELHLKIEHKDNMFPKSHWFVCKMCGHRLFMRLSDLRRHMQD  113 (459)
Q Consensus        57 ~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~~C~~C~~~~f~~~~~l~~H~~~  113 (459)
                      -.|++|.....+..+|+.|...--.+         +|+.|-.....+.+.|+.|.+.
T Consensus         4 mvC~~C~~ECET~kEl~~H~~sCp~g---------qCPYC~~~~e~tesAlQaHfkv   51 (57)
T 2k9h_A            4 MVCDVCHHECETAKELESHRQSCING---------QCPYCMTITEATESALQAHYSI   51 (57)
T ss_dssp             TBCTTTCCBCSSTTTHHHHHHHHTTT---------BCTTTCCBCCSSHHHHHHHHTT
T ss_pred             chhhHHHhhhhhHHHHHHHhccCCCC---------CCCcccCcCCcCHHHHHHHHHH
Confidence            35888888888889999998887654         4999976657888999999875

>2elu_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2elw_A

Probab=81.38  E-value=1.2  Score=23.77  Aligned_cols=25  Identities=40%  Similarity=0.777  Sum_probs=18.2

Q ss_pred             cccCCCCCcCCChHHHHHHHHhhcC
Q psy11588        376 VVCSYCGNTYKNPKSLESHIRYAHT  400 (459)
Q Consensus       376 ~~C~~C~~~f~~~~~l~~H~~~~H~  400 (459)
                      --|..|.+.+..-.+|..|++..|.
T Consensus        10 qhcrfckkkysdvknlikhire~hd   34 (37)
T 2elu_A           10 QHCRFCKKKYSDVKNLIKHIRDAHD   34 (37)
T ss_dssp             CEETTTTEECSSHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            3477777777777778888776664

>1wjv_A Cell growth regulating nucleolar protein LYAR; DNA-binding protein, C2H2 type zinc-finger, structural genomics; NMR {Mus musculus} SCOP: g.37.1.2 g.37.1.2

Probab=80.87  E-value=0.56  Score=31.67  Aligned_cols=46  Identities=20%  Similarity=0.457  Sum_probs=25.4

Q ss_pred             ccccccccccccChHHHHHHHHHcCCCCCcccccccccccccchHHHH
Q psy11588        320 DHQCSVCGKAFADITNMKVHMRIHTGEKKYVCETCGASFVQWGSLNQH  367 (459)
Q Consensus       320 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H  367 (459)
                      .|.|..||..+. +..+..|...-.+...|.|..|++.|.. ..++.|
T Consensus        10 ~F~C~~Cgd~lK-K~kv~~H~~~Cr~~~~~SCIDC~~~F~~-~~y~~H   55 (79)
T 1wjv_A           10 FFTCNACGESVK-KIQVEKHVSNCRNCECLSCIDCGKDFWG-DDYKSH   55 (79)
T ss_dssp             EEEESSSCCEEE-TTHHHHHHHHCTTCCEEEETTTTEEEEG-GGTTTC
T ss_pred             EEEcCCCCCeee-cccchhHHhhCCCCCcEEecccCCeeCC-CCEeCE
Confidence            356666665543 3455666555544445666666666653 334444

>1fu9_A U-shaped transcriptional cofactor; zinc-finger, beta-hairpin + alpha-helix; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1jn7_A

Probab=80.78  E-value=1.7  Score=24.26  Aligned_cols=22  Identities=23%  Similarity=0.557  Sum_probs=20.1

Q ss_pred             cccccchhhccChhHHHHhhhh
Q psy11588        182 HSCQKCEESFDNCNNLWSHMFI  203 (459)
Q Consensus       182 ~~C~~C~~~f~~~~~l~~H~~~  203 (459)
                      +.|..|+.+|.+...+..|++-
T Consensus         9 ~~C~~C~IsF~~l~ty~aHKk~   30 (36)
T 1fu9_A            9 KYCSTCDISFNYVKTYLAHKQF   30 (36)
T ss_dssp             SEETTTTEECSSHHHHHHHHHH
T ss_pred             CeeccccceehhhHHHhhhhee
Confidence            7899999999999999999864

>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1

Probab=80.06  E-value=0.83  Score=31.73  Aligned_cols=13  Identities=31%  Similarity=0.657  Sum_probs=7.2

Q ss_pred             cccccchhccccc
Q psy11588         34 QELSCEQCGCSLD   46 (459)
Q Consensus        34 ~~~~C~~C~~~f~   46 (459)
                      ..|.|..||..+.
T Consensus        34 ~~y~C~vCGyvYD   46 (87)
T 1s24_A           34 LKWICITCGHIYD   46 (87)
T ss_dssp             CEEEETTTTEEEE
T ss_pred             ceEECCCCCeEec
Confidence            3466666665544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	459
d1p7aa_	37	g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (	1e-06
d1p7aa_	37	g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (	9e-04
d2epsa1	39	g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [	1e-06
d2epsa1	39	g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [	0.002
d2adra1	29	g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Sac	2e-06
d2cota2	38	g.37.1.1 (A:7-44) Zinc finger and SCAN domain-cont	2e-06
d2cota2	38	g.37.1.1 (A:7-44) Zinc finger and SCAN domain-cont	7e-04
d2cota2	38	g.37.1.1 (A:7-44) Zinc finger and SCAN domain-cont	8e-04
d1x6ea1	33	g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (H	2e-06
d1x6ea1	33	g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (H	3e-06
d1x6ea1	33	g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (H	0.002
d2dlka2	36	g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692	3e-06
d1x6ha2	36	g.37.1.1 (A:8-43) Transcriptional repressor CTCF {	7e-06
d1x6ha2	36	g.37.1.1 (A:8-43) Transcriptional repressor CTCF {	9e-05
d2ct1a2	36	g.37.1.1 (A:8-43) Transcriptional repressor CTCF {	9e-06
d2ct1a2	36	g.37.1.1 (A:8-43) Transcriptional repressor CTCF {	0.004
d1ncsa_	47	g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's ye	2e-05
d1sp1a_	29	g.37.1.1 (A:) Transcription factor sp1 {Human (Hom	2e-05
d1a1ia2	28	g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus)	5e-05
d1sp2a_	31	g.37.1.1 (A:) Transcription factor sp1 {Human (Hom	6e-05
d2glia3	30	g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo	2e-04
d1srka_	35	g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {M	5e-04
d1srka_	35	g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {M	0.001
d2csha1	53	g.37.1.1 (A:8-60) Zinc finger protein 297b {Human	5e-04
d2csha1	53	g.37.1.1 (A:8-60) Zinc finger protein 297b {Human	7e-04
d2csha1	53	g.37.1.1 (A:8-60) Zinc finger protein 297b {Human	0.002
d1ubdc2	28	g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger	0.004
d1a1ia1	29	g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus)	0.004

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]} Length = 37

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.8 bits (101), Expect = 1e-06
 Identities = 12/36 (33%), Positives = 14/36 (38%)

Query: 339 HMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHTAV 374
             R  TG K + C  C  SF +   L  H   H  V
Sbjct: 2   STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHMLV 37

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]} Length = 37

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 34.7 bits (80), Expect = 9e-04
 Identities = 11/34 (32%), Positives = 14/34 (41%)

Query: 423 HMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVHL 456
                T  +PF C  C  +F    HL  H K H+
Sbjct: 2   STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHM 35

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (101), Expect = 1e-06
 Identities = 10/33 (30%), Positives = 20/33 (60%), Gaps = 1/33 (3%)

Query: 321 HQCSVCGKAFADITNMKVHMR-IHTGEKKYVCE 352
           + C  CGK F+   ++  H++ +HT E+ + C+
Sbjct: 6   YICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQ 38

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.8 bits (78), Expect = 0.002
 Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)

Query: 407 CDVCGKEFKMKKRLKEHM-AVHTTDRPFVCDM 437
           C  CGK F     L  H+  VHT++RP  C +
Sbjct: 8   CQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV 39

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence} Length = 29

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

 Score = 42.2 bits (100), Expect = 2e-06
 Identities = 14/29 (48%), Positives = 17/29 (58%)

Query: 319 RDHQCSVCGKAFADITNMKVHMRIHTGEK 347
           R   C VC +AFA   ++K H R HT EK
Sbjct: 1   RSFVCEVCTRAFARQEHLKRHYRSHTNEK 29

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]} Length = 38

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.1 bits (99), Expect = 2e-06
 Identities = 10/34 (29%), Positives = 15/34 (44%)

Query: 339 HMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
                   ++Y C+ CG SF     L++H   HT
Sbjct: 3   SEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHT 36

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]} Length = 38

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.1 bits (81), Expect = 7e-04
 Identities = 12/35 (34%), Positives = 21/35 (60%)

Query: 312 KAVHEKVRDHQCSVCGKAFADITNMKVHMRIHTGE 346
           +    + R ++C  CGK+F+  +++  H R HTGE
Sbjct: 4   EWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGE 38

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]} Length = 38

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.8 bits (80), Expect = 8e-04
 Identities = 8/33 (24%), Positives = 12/33 (36%)

Query: 423 HMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVH 455
                   R + CD C  +F     L +H + H
Sbjct: 3   SEWQQRERRRYKCDECGKSFSHSSDLSKHRRTH 35

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]} Length = 33

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.8 bits (99), Expect = 2e-06
 Identities = 13/33 (39%), Positives = 20/33 (60%)

Query: 314 VHEKVRDHQCSVCGKAFADITNMKVHMRIHTGE 346
           +H   + + C  CGKAF+  + +  H R+HTGE
Sbjct: 1   IHSGEKPYGCVECGKAFSRSSILVQHQRVHTGE 33

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]} Length = 33

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (98), Expect = 3e-06
 Identities = 16/31 (51%), Positives = 19/31 (61%)

Query: 342 IHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
           IH+GEK Y C  CG +F +   L QH  VHT
Sbjct: 1   IHSGEKPYGCVECGKAFSRSSILVQHQRVHT 31

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]} Length = 33

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.7 bits (78), Expect = 0.002
 Identities = 11/30 (36%), Positives = 17/30 (56%)

Query: 426 VHTTDRPFVCDMCPSAFKLKKHLQQHYKVH 455
           +H+ ++P+ C  C  AF     L QH +VH
Sbjct: 1   IHSGEKPYGCVECGKAFSRSSILVQHQRVH 30

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.6 bits (98), Expect = 3e-06
 Identities = 11/30 (36%), Positives = 19/30 (63%)

Query: 323 CSVCGKAFADITNMKVHMRIHTGEKKYVCE 352
              CGK+F    ++K HM++H+  + Y+CE
Sbjct: 6   EPACGKSFNFKKHLKEHMKLHSDTRDYICE 35

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.4 bits (95), Expect = 7e-06
 Identities = 14/35 (40%), Positives = 17/35 (48%)

Query: 341 RIHTGEKKYVCETCGASFVQWGSLNQHNLVHTAVN 375
           R HTGEK Y C  C  +F Q   L+ H   +   N
Sbjct: 1   RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPN 35

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (87), Expect = 9e-05
 Identities = 7/34 (20%), Positives = 13/34 (38%)

Query: 314 VHEKVRDHQCSVCGKAFADITNMKVHMRIHTGEK 347
            H   + + CS C K F     + +H + +    
Sbjct: 2   THTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPN 35

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.4 bits (95), Expect = 9e-06
 Identities = 14/32 (43%), Positives = 17/32 (53%)

Query: 341 RIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
           R H+GEK Y C  C A F Q G++  H L   
Sbjct: 1   RTHSGEKPYECYICHARFTQSGTMKMHILQKH 32

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.6 bits (75), Expect = 0.004
 Identities = 9/34 (26%), Positives = 16/34 (47%), Gaps = 1/34 (2%)

Query: 314 VHEKVRDHQCSVCGKAFADITNMKVH-MRIHTGE 346
            H   + ++C +C   F     MK+H ++ HT  
Sbjct: 2   THSGEKPYECYICHARFTQSGTMKMHILQKHTEN 35

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 47

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.9 bits (93), Expect = 2e-05
 Identities = 9/46 (19%), Positives = 22/46 (47%)

Query: 302 LRYRNLVCHIKAVHEKVRDHQCSVCGKAFADITNMKVHMRIHTGEK 347
           L   ++  ++K + +K  +     C K F    N++ H++ H  ++
Sbjct: 2   LPRGSIDKYVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR 47

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]} Length = 29

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.9 bits (91), Expect = 2e-05
 Identities = 7/27 (25%), Positives = 12/27 (44%)

Query: 321 HQCSVCGKAFADITNMKVHMRIHTGEK 347
             C  C K F    ++  H++ H  +K
Sbjct: 3   FACPECPKRFMRSDHLSKHIKTHQNKK 29

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]} Length = 28

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.0 bits (89), Expect = 5e-05
 Identities = 9/25 (36%), Positives = 15/25 (60%)

Query: 321 HQCSVCGKAFADITNMKVHMRIHTG 345
            QC +C + F+   ++  H+R HTG
Sbjct: 4   FQCRICMRNFSRSDHLTTHIRTHTG 28

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]} Length = 31

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.7 bits (88), Expect = 6e-05
 Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 2/31 (6%)

Query: 319 RDHQCSV--CGKAFADITNMKVHMRIHTGEK 347
           R   C+   CGK F     ++ H R HTGEK
Sbjct: 1   RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]} Length = 30

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.2 bits (84), Expect = 2e-04
 Identities = 12/30 (40%), Positives = 21/30 (70%), Gaps = 2/30 (6%)

Query: 319 RDHQCSV--CGKAFADITNMKVHMRIHTGE 346
           + H+C+   C K+++ + N+K H+R HTGE
Sbjct: 1   KPHKCTFEGCRKSYSRLENLKTHLRSHTGE 30

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]} Length = 35

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.5 bits (82), Expect = 5e-04
 Identities = 9/30 (30%), Positives = 17/30 (56%)

Query: 343 HTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
            +G++ +VC  C ++F    +  +H  VHT
Sbjct: 2   SSGKRPFVCRICLSAFTTKANCARHLKVHT 31

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]} Length = 35

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 34.0 bits (78), Expect = 0.001
 Identities = 9/28 (32%), Positives = 13/28 (46%)

Query: 319 RDHQCSVCGKAFADITNMKVHMRIHTGE 346
           R   C +C  AF    N   H+++HT  
Sbjct: 6   RPFVCRICLSAFTTKANCARHLKVHTDT 33

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]} Length = 53

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.8 bits (82), Expect = 5e-04
 Identities = 16/46 (34%), Positives = 21/46 (45%)

Query: 326 CGKAFADITNMKVHMRIHTGEKKYVCETCGASFVQWGSLNQHNLVH 371
           CGK+F   +    HM +H G + Y C  CG  F     L  H  +H
Sbjct: 8   CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH 53

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]} Length = 53

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.4 bits (81), Expect = 7e-04
 Identities = 20/46 (43%), Positives = 27/46 (58%)

Query: 410 CGKEFKMKKRLKEHMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVH 455
           CGK F  K +   HM++H   RP+ C +C   FK+K HL  H K+H
Sbjct: 8   CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH 53

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]} Length = 53

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.3 bits (78), Expect = 0.002
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 2/55 (3%)

Query: 289 EKDHCCHICKKVFLRYRNLVCHIKAVHEKVRDHQCSVCGKAFADITNMKVHMRIH 343
           +K + C  C K F        H+  +H  +R + C VCGK F    ++  HM+IH
Sbjct: 1   DKLYPCQ-CGKSFTHKSQRDRHMS-MHLGLRPYGCGVCGKKFKMKHHLVGHMKIH 53

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]} Length = 28

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.7 bits (74), Expect = 0.004
 Identities = 14/28 (50%), Positives = 19/28 (67%)

Query: 319 RDHQCSVCGKAFADITNMKVHMRIHTGE 346
           R H C+ CGKAF + + +K H  +HTGE
Sbjct: 1   RVHVCAECGKAFVESSKLKRHQLVHTGE 28

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]} Length = 29

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 32.3 bits (74), Expect = 0.004
 Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 2/29 (6%)

Query: 319 RDHQCSV--CGKAFADITNMKVHMRIHTG 345
           R + C V  C + F+   ++  H+RIHTG
Sbjct: 1   RPYACPVESCDRRFSRSADLTRHIRIHTG 29

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	459
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	99.67
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	99.49
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	99.3
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.3
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	99.28
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.26
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	99.24
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.15
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	99.15
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.11
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	99.1
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	99.1
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	99.08
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	99.05
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	99.0
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	99.0
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.98
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	98.96
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	98.96
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.95
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	98.94
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.92
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	98.91
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	98.89
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.83
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	98.82
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.8
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.76
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	98.74
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.7
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.65
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.64
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.62
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.6
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.57
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	98.55
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.44
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.44
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.37
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.36
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.28
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.26
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.24
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.15
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.14
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.11
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.08
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.01
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	97.97
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.83
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	97.8
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	97.8
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	97.75
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.75
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	97.73
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	97.73
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.72
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	97.57
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.56
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	97.49
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.42
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	97.37
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.37
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	97.31
d1tf3a2	30	Transcription factor IIIA, TFIIIA {Xenopus laevis	97.29
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	97.27
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	97.23
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	97.19
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.13
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	97.13
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.11
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	97.09
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	97.09
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.03
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	96.96
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	96.92
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	96.88
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	96.79
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	96.73
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.64
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	96.58
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	96.48
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	96.36
d1tf3a2	30	Transcription factor IIIA, TFIIIA {Xenopus laevis	96.34
d1x5wa1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	96.3
d2drpa2	26	Tramtrack protein (two zinc-finger peptide) {Droso	96.09
d1x5wa1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	96.02
d2dlqa2	28	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	95.94
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	95.78
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	95.75
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	95.53
d2dlqa2	28	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	95.52
d2ct1a1	28	Transcriptional repressor CTCF {Human (Homo sapien	95.09
d2drpa2	26	Tramtrack protein (two zinc-finger peptide) {Droso	94.94
d1x6ha1	37	Transcriptional repressor CTCF {Human (Homo sapien	94.77
d2ct1a1	28	Transcriptional repressor CTCF {Human (Homo sapien	94.42
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	93.88
d2glia2	33	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	93.6
d1tf3a1	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	93.29
d2glia2	33	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	93.27
d1y0jb1	36	U-shaped transcription factor, different fingers {	92.63
d2ctda2	30	Zinc finger protein 512, ZNF512 {Human (Homo sapie	92.4
d1x6ha1	37	Transcriptional repressor CTCF {Human (Homo sapien	92.36
d1y0jb1	36	U-shaped transcription factor, different fingers {	90.75
d1iroa_	53	Rubredoxin {Clostridium pasteurianum [TaxId: 1501]	90.58
d2ctda2	30	Zinc finger protein 512, ZNF512 {Human (Homo sapie	90.54
d1s24a_	56	Two-iron rubredoxin {Pseudomonas oleovorans [TaxId	90.48
d1brfa_	53	Rubredoxin {Archaeon Pyrococcus furiosus [TaxId: 2	90.16
d2j7ja1	28	Transcription factor IIIA, TFIIIA {Xenopus laevis	89.9
d1tf3a1	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	89.06
d2dsxa1	52	Rubredoxin {Desulfovibrio gigas [TaxId: 879]}	88.96
d1vd4a_	62	Transcription initiation factor TFIIE-alpha {Human	88.5
d2drpa1	37	Tramtrack protein (two zinc-finger peptide) {Droso	88.29
d1x6fa1	75	Zinc finger protein 462, ZNF462 {Human (Homo sapie	87.89
d1ubdc1	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	87.84
d1ubdc1	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	87.81
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	86.88
d6rxna_	45	Rubredoxin {Desulfovibrio desulfuricans, strain 27	86.17
d1yuja_	54	GAGA factor {Drosophila melanogaster [TaxId: 7227]	86.02
d1x6fa1	75	Zinc finger protein 462, ZNF462 {Human (Homo sapie	85.33
d1yuja_	54	GAGA factor {Drosophila melanogaster [TaxId: 7227]	84.98
d1vd4a_	62	Transcription initiation factor TFIIE-alpha {Human	84.43
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	83.95
d1dx8a_	70	Rubredoxin {Guillardia theta [TaxId: 55529]}	82.91
d2drpa1	37	Tramtrack protein (two zinc-finger peptide) {Droso	82.78
d2dlka1	30	Zinc finger protein 692, ZNF692 {Human (Homo sapie	82.54
d1tf3a3	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	80.88

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=1.3e-17  Score=106.71  Aligned_cols=53  Identities=40%  Similarity=0.815  Sum_probs=50.9

Q ss_pred             CCccccccchhccCChHHHHHHHHHhCCCCCcccCccccccCChHHHHHHHHHh
Q psy11588        402 RQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVH  455 (459)
Q Consensus       402 ~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~H  455 (459)
                      ++||+|+ ||++|.....|..|+++|++++||.|++||++|.+.+.|..|+++|
T Consensus         1 EK~y~C~-Cgk~F~~~~~l~~H~~~Ht~ekpy~C~~C~k~F~~~~~L~~H~r~H   53 (53)
T d2csha1           1 DKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH   53 (53)
T ss_dssp             CCCEECT-TSCEESSHHHHHHHHHHHSCCCSEECTTTSCEESSSHHHHHHHTTT
T ss_pred             CcCCCCC-CCCeECCHHHhHHHhhccccccCCcCCCcCCEecCHHHHHHHHhcC
Confidence            5799995 9999999999999999999999999999999999999999999987

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=8.5e-15  Score=93.37  Aligned_cols=53  Identities=32%  Similarity=0.626  Sum_probs=39.9

Q ss_pred             CCccccccccccccChHHHHHHHHHcCCCCCcccccccccccccchHHHHHhhh
Q psy11588        318 VRDHQCSVCGKAFADITNMKVHMRIHTGEKKYVCETCGASFVQWGSLNQHNLVH  371 (459)
Q Consensus       318 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h  371 (459)
                      +++|.|. ||+.|.....|..|+++|.+++||.|++||+.|...+.|..|+++|
T Consensus         1 EK~y~C~-Cgk~F~~~~~l~~H~~~Ht~ekpy~C~~C~k~F~~~~~L~~H~r~H   53 (53)
T d2csha1           1 DKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH   53 (53)
T ss_dssp             CCCEECT-TSCEESSHHHHHHHHHHHSCCCSEECTTTSCEESSSHHHHHHHTTT
T ss_pred             CcCCCCC-CCCeECCHHHhHHHhhccccccCCcCCCcCCEecCHHHHHHHHhcC
Confidence            4677774 7777777777777777777777777777777777777777777765

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=5.2e-13  Score=76.78  Aligned_cols=37  Identities=38%  Similarity=0.861  Sum_probs=33.6

Q ss_pred             CCCccccccchhccCChHHHHHHHH-HhCCCCCcccCc
Q psy11588        401 IRQKSICDVCGKEFKMKKRLKEHMA-VHTTDRPFVCDM  437 (459)
Q Consensus       401 ~~~~~~C~~C~~~f~~~~~l~~H~~-~H~~~~~~~C~~  437 (459)
                      .++||+|.+||++|...+.|..|++ +|++++||+|++
T Consensus         2 ~~Kpy~C~~Cgk~F~~~~~L~~H~r~~Ht~ekpy~C~i   39 (39)
T d2epsa1           2 VGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV   39 (39)
T ss_dssp             SSCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSSS
T ss_pred             CCCCccCCCCCCCcCChHHhhccCcCccCCCcCcCCcC
Confidence            4689999999999999999999986 799999999975

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=5.9e-13  Score=73.35  Aligned_cols=33  Identities=33%  Similarity=0.673  Sum_probs=28.3

Q ss_pred             HhCCCCCcccCccccccCChHHHHHHHHHhcCC
Q psy11588        426 VHTTDRPFVCDMCPSAFKLKKHLQQHYKVHLKK  458 (459)
Q Consensus       426 ~H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~  458 (459)
                      +|++++||+|.+||++|.+.+.|..|+++|+||
T Consensus         1 IHTgekpy~C~~Cgk~F~~~~~L~~H~r~HtgE   33 (33)
T d1x6ea1           1 IHSGEKPYGCVECGKAFSRSSILVQHQRVHTGE   33 (33)
T ss_dssp             TTTTCCCEECSSSCCEESSHHHHHHHHHGGGCS
T ss_pred             CcCCCCCeeCCCCCCEeCchHHhHhhccccCCC
Confidence            578888888888888888888888888888876

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=2.4e-13  Score=78.58  Aligned_cols=37  Identities=22%  Similarity=0.446  Sum_probs=31.9

Q ss_pred             HHHHHhCCCCCcccCccccccCChHHHHHHHHHhcCC
Q psy11588        422 EHMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVHLKK  458 (459)
Q Consensus       422 ~H~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~  458 (459)
                      +|+++|++++||.|++||++|.+.++|..|+++|+||
T Consensus         2 rH~~~Ht~ekpy~C~~CgK~F~~~s~L~~H~r~HtGE   38 (38)
T d2cota2           2 RSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGE   38 (38)
T ss_dssp             CCCSCCCCSCSSBCSSSCCBCSCHHHHHHHHTTTCCS
T ss_pred             ccCcccCCCCCEecCCCCceeeCHHHHHHhCccCCCC
Confidence            4777888888999988999999999999998888886

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=1.1e-12  Score=74.51  Aligned_cols=35  Identities=29%  Similarity=0.689  Sum_probs=28.1

Q ss_pred             HHhCCCCCcccCccccccCChHHHHHHHHHhcCCC
Q psy11588        425 AVHTTDRPFVCDMCPSAFKLKKHLQQHYKVHLKKD  459 (459)
Q Consensus       425 ~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~  459 (459)
                      ++|+||+||+|++||++|.+.+.|..|+++|++++
T Consensus         1 R~HTgekPy~C~~C~k~F~~~~~L~~H~r~H~~~~   35 (36)
T d1x6ha2           1 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPN   35 (36)
T ss_dssp             TTCCCCCCEECSSSSCEESSHHHHHHHHHHTTCSS
T ss_pred             CCCCCCCCEECCCCCCCcCCHhHHHHhCcccCCCC
Confidence            46888888888888888888888888888887763

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.24  E-value=7e-13  Score=75.98  Aligned_cols=35  Identities=31%  Similarity=0.513  Sum_probs=31.5

Q ss_pred             HHHHhCCCCCcccCccccccCChHHHHHHHHHhcC
Q psy11588        423 HMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVHLK  457 (459)
Q Consensus       423 H~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~  457 (459)
                      |.++|+||+||+|+.|+++|+++++|.+|+++|++
T Consensus         2 h~R~HTgeKPy~C~~C~k~F~~~~~L~~H~r~H~~   36 (37)
T d1p7aa_           2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHML   36 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGGTC
T ss_pred             CCCccCCccCeEeCCCCCEecCHHHHHHHHhcCcC
Confidence            56889999999999999999999999999999975

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=6.3e-12  Score=71.17  Aligned_cols=34  Identities=18%  Similarity=0.523  Sum_probs=26.6

Q ss_pred             HHhCCCCCcccCccccccCChHHHHHHHHHhcCC
Q psy11588        425 AVHTTDRPFVCDMCPSAFKLKKHLQQHYKVHLKK  458 (459)
Q Consensus       425 ~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~  458 (459)
                      ++|+||+||+|++|+++|+++++|.+|++.++++
T Consensus         1 R~HTgekP~~C~~C~k~F~~~~~L~~H~~~~H~~   34 (36)
T d2ct1a2           1 RTHSGEKPYECYICHARFTQSGTMKMHILQKHTE   34 (36)
T ss_dssp             CCCSCCCSEECTTTCCEESCHHHHHHHHHHHSSS
T ss_pred             CccCCCCCEeCCCCcccccchHHHHHHcccccCC
Confidence            4688888888888888888888888887665554

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.15  E-value=8.7e-12  Score=69.60  Aligned_cols=32  Identities=44%  Similarity=0.816  Sum_probs=24.5

Q ss_pred             hCCCCCcccCccccccCChHHHHHHHHHhcCC
Q psy11588        427 HTTDRPFVCDMCPSAFKLKKHLQQHYKVHLKK  458 (459)
Q Consensus       427 H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~  458 (459)
                      |+|++||+|++|++.|+++++|.+|+++|++.
T Consensus         2 ~TGekPy~C~~C~k~F~~~~~L~~H~r~Ht~~   33 (35)
T d1srka_           2 SSGKRPFVCRICLSAFTTKANCARHLKVHTDT   33 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGGGTSC
T ss_pred             CCCCccccCCCCCCcccChHHHHHHccccCCc
Confidence            57778888888888888888888888777653

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=1.5e-11  Score=67.66  Aligned_cols=33  Identities=33%  Similarity=0.508  Sum_probs=31.4

Q ss_pred             hcCCCCccccccchhccCChHHHHHHHHHhCCC
Q psy11588        398 AHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTD  430 (459)
Q Consensus       398 ~H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~  430 (459)
                      .|++++||+|.+||++|...+.|..|+++|+||
T Consensus         1 IHTgekpy~C~~Cgk~F~~~~~L~~H~r~HtgE   33 (33)
T d1x6ea1           1 IHSGEKPYGCVECGKAFSRSSILVQHQRVHTGE   33 (33)
T ss_dssp             TTTTCCCEECSSSCCEESSHHHHHHHHHGGGCS
T ss_pred             CcCCCCCeeCCCCCCEeCchHHhHhhccccCCC
Confidence            489999999999999999999999999999986

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=99.10  E-value=1.9e-11  Score=65.23  Aligned_cols=29  Identities=41%  Similarity=1.009  Sum_probs=20.7

Q ss_pred             CCcccCccccccCChHHHHHHHHHhcCCC
Q psy11588        431 RPFVCDMCPSAFKLKKHLQQHYKVHLKKD  459 (459)
Q Consensus       431 ~~~~C~~C~~~f~~~~~l~~H~~~H~~~~  459 (459)
                      +||+|++|+++|++.+.|.+|+++|+||+
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~r~HTgEK   29 (29)
T d2adra1           1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK   29 (29)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTTSSC
T ss_pred             CcCCCCCCCCCCCCchHcccccCcccCCC
Confidence            46777777777777777777777777764

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.10  E-value=1.7e-11  Score=64.49  Aligned_cols=28  Identities=32%  Similarity=0.787  Sum_probs=22.6

Q ss_pred             CCCcccCccccccCChHHHHHHHHHhcC
Q psy11588        430 DRPFVCDMCPSAFKLKKHLQQHYKVHLK  457 (459)
Q Consensus       430 ~~~~~C~~C~~~f~~~~~l~~H~~~H~~  457 (459)
                      |+||+|++|+++|.+.++|.+|+++|+|
T Consensus         1 EKPy~C~~C~k~F~~~~~L~~H~r~HTG   28 (28)
T d1a1ia2           1 QKPFQCRICMRNFSRSDHLTTHIRTHTG   28 (28)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHHC
T ss_pred             CcCccCCCCcCEecccccccccCCCccC
Confidence            5788888888888888888888888875

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=3.1e-11  Score=64.21  Aligned_cols=29  Identities=38%  Similarity=0.801  Sum_probs=21.3

Q ss_pred             CCcccCccccccCChHHHHHHHHHhcCCC
Q psy11588        431 RPFVCDMCPSAFKLKKHLQQHYKVHLKKD  459 (459)
Q Consensus       431 ~~~~C~~C~~~f~~~~~l~~H~~~H~~~~  459 (459)
                      +||.|++||++|++++.|.+|+++|+|++
T Consensus         1 Kpy~C~~C~k~F~~~s~L~~H~r~HtgeK   29 (29)
T d1sp1a_           1 KKFACPECPKRFMRSDHLSKHIKTHQNKK   29 (29)
T ss_dssp             CCSCCTTTTCCCSCSHHHHHHHHGGGCCC
T ss_pred             CCEECCcCCCeecchHHhhhhcCccCCcC
Confidence            56777777777777777777777777764

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.05  E-value=1.4e-11  Score=70.97  Aligned_cols=36  Identities=31%  Similarity=0.548  Sum_probs=33.2

Q ss_pred             HHHhhcCCCCccccccchhccCChHHHHHHHHHhCCC
Q psy11588        394 HIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTD  430 (459)
Q Consensus       394 H~~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~  430 (459)
                      |++ .|++++||.|++||++|...+.|..|+++|+||
T Consensus         3 H~~-~Ht~ekpy~C~~CgK~F~~~s~L~~H~r~HtGE   38 (38)
T d2cota2           3 SEW-QQRERRRYKCDECGKSFSHSSDLSKHRRTHTGE   38 (38)
T ss_dssp             CCS-CCCCSCSSBCSSSCCBCSCHHHHHHHHTTTCCS
T ss_pred             cCc-ccCCCCCEecCCCCceeeCHHHHHHhCccCCCC
Confidence            455 899999999999999999999999999999986

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.00  E-value=9.8e-12  Score=75.05  Aligned_cols=41  Identities=22%  Similarity=0.558  Sum_probs=32.9

Q ss_pred             HHHHHHHHHhCCCCCcccCc--cccccCChHHHHHHHHHhcCCC
Q psy11588        418 KRLKEHMAVHTTDRPFVCDM--CPSAFKLKKHLQQHYKVHLKKD  459 (459)
Q Consensus       418 ~~l~~H~~~H~~~~~~~C~~--C~~~f~~~~~l~~H~~~H~~~~  459 (459)
                      +.|..|+. |++++||.|++  |+++|++.++|..|+++|+|++
T Consensus         5 ~~l~~h~~-h~gekpy~C~~~~C~k~F~~~~~L~~H~r~Htgek   47 (47)
T d1ncsa_           5 GSIDKYVK-EMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             SSGGGSCE-EETTTEEECCCTTCCCEECSSSSHHHHHHHHTTTC
T ss_pred             chhcchhh-ccCCCCeECCcCCCCccccCchHHHhhcccccCCC
Confidence            34556664 88888888877  8888888888888888888875

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=99.00  E-value=8.7e-11  Score=62.60  Aligned_cols=29  Identities=31%  Similarity=0.770  Sum_probs=26.8

Q ss_pred             CccccccchhccCChHHHHHHHHHhCCCC
Q psy11588        403 QKSICDVCGKEFKMKKRLKEHMAVHTTDR  431 (459)
Q Consensus       403 ~~~~C~~C~~~f~~~~~l~~H~~~H~~~~  431 (459)
                      +||+|++||++|...+.|..|+++|+||+
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~r~HTgEK   29 (29)
T d2adra1           1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK   29 (29)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTTSSC
T ss_pred             CcCCCCCCCCCCCCchHcccccCcccCCC
Confidence            58999999999999999999999999985

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.98  E-value=1.7e-10  Score=66.10  Aligned_cols=37  Identities=30%  Similarity=0.710  Sum_probs=31.5

Q ss_pred             CCCcccCCCCCcCCChHHHHHHHHhhcCCCCcccccc
Q psy11588        373 AVNVVCSYCGNTYKNPKSLESHIRYAHTIRQKSICDV  409 (459)
Q Consensus       373 ~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~  409 (459)
                      ++||+|++||+.|...+.|..|++..|++++||+|++
T Consensus         3 ~Kpy~C~~Cgk~F~~~~~L~~H~r~~Ht~ekpy~C~i   39 (39)
T d2epsa1           3 GKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV   39 (39)
T ss_dssp             SCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSSS
T ss_pred             CCCccCCCCCCCcCChHHhhccCcCccCCCcCcCCcC
Confidence            3578899999999999999999876799999999874

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.96  E-value=1.6e-10  Score=65.37  Aligned_cols=34  Identities=26%  Similarity=0.431  Sum_probs=32.0

Q ss_pred             hcCCCCccccccchhccCChHHHHHHHHHhCCCC
Q psy11588        398 AHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDR  431 (459)
Q Consensus       398 ~H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~  431 (459)
                      .|++++||+|++||++|..++.|..|+++|+++.
T Consensus         2 ~HTgekPy~C~~C~k~F~~~~~L~~H~r~H~~~~   35 (36)
T d1x6ha2           2 THTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPN   35 (36)
T ss_dssp             TCCCCCCEECSSSSCEESSHHHHHHHHHHTTCSS
T ss_pred             CCCCCCCEECCCCCCCcCCHhHHHHhCcccCCCC
Confidence            6999999999999999999999999999998763

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.96  E-value=1.4e-10  Score=64.63  Aligned_cols=32  Identities=25%  Similarity=0.528  Sum_probs=30.3

Q ss_pred             cCCCCccccccchhccCChHHHHHHHHHhCCC
Q psy11588        399 HTIRQKSICDVCGKEFKMKKRLKEHMAVHTTD  430 (459)
Q Consensus       399 H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~  430 (459)
                      |++++||+|++|++.|..++.|..|+++|+++
T Consensus         2 ~TGekPy~C~~C~k~F~~~~~L~~H~r~Ht~~   33 (35)
T d1srka_           2 SSGKRPFVCRICLSAFTTKANCARHLKVHTDT   33 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGGGTSC
T ss_pred             CCCCccccCCCCCCcccChHHHHHHccccCCc
Confidence            78999999999999999999999999999875

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=1.7e-10  Score=61.29  Aligned_cols=29  Identities=28%  Similarity=0.595  Sum_probs=26.9

Q ss_pred             CccccccchhccCChHHHHHHHHHhCCCC
Q psy11588        403 QKSICDVCGKEFKMKKRLKEHMAVHTTDR  431 (459)
Q Consensus       403 ~~~~C~~C~~~f~~~~~l~~H~~~H~~~~  431 (459)
                      +||.|++||++|..++.|..|+++|+||+
T Consensus         1 Kpy~C~~C~k~F~~~s~L~~H~r~HtgeK   29 (29)
T d1sp1a_           1 KKFACPECPKRFMRSDHLSKHIKTHQNKK   29 (29)
T ss_dssp             CCSCCTTTTCCCSCSHHHHHHHHGGGCCC
T ss_pred             CCEECCcCCCeecchHHhhhhcCccCCcC
Confidence            58999999999999999999999999985

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.94  E-value=1.5e-10  Score=65.18  Aligned_cols=33  Identities=45%  Similarity=1.011  Sum_probs=29.7

Q ss_pred             ccccc--chhccCChHHHHHHHHHhCCCCCcccCc
Q psy11588        405 SICDV--CGKEFKMKKRLKEHMAVHTTDRPFVCDM  437 (459)
Q Consensus       405 ~~C~~--C~~~f~~~~~l~~H~~~H~~~~~~~C~~  437 (459)
                      |.|+.  ||++|..++.|..|+++|+|++||+|+.
T Consensus         2 f~C~~~~C~k~F~~~~~L~~H~r~Htgekpy~C~f   36 (36)
T d2dlka2           2 FSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEF   36 (36)
T ss_dssp             EECSCTTTCCEESSHHHHHHHHHHHHTSCCCSCCS
T ss_pred             eECCCCCCCCeeCChhHhccccCeeCCCCCEeCCC
Confidence            67876  9999999999999999999999999973

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.92  E-value=1.7e-10  Score=60.55  Aligned_cols=28  Identities=25%  Similarity=0.590  Sum_probs=26.1

Q ss_pred             CCccccccchhccCChHHHHHHHHHhCC
Q psy11588        402 RQKSICDVCGKEFKMKKRLKEHMAVHTT  429 (459)
Q Consensus       402 ~~~~~C~~C~~~f~~~~~l~~H~~~H~~  429 (459)
                      ++||+|++|+++|..++.|..|+++|+|
T Consensus         1 EKPy~C~~C~k~F~~~~~L~~H~r~HTG   28 (28)
T d1a1ia2           1 QKPFQCRICMRNFSRSDHLTTHIRTHTG   28 (28)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHHC
T ss_pred             CcCccCCCCcCEecccccccccCCCccC
Confidence            5799999999999999999999999986

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.91  E-value=1.6e-10  Score=65.94  Aligned_cols=35  Identities=23%  Similarity=0.304  Sum_probs=31.3

Q ss_pred             HHHhhcCCCCccccccchhccCChHHHHHHHHHhCC
Q psy11588        394 HIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTT  429 (459)
Q Consensus       394 H~~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~  429 (459)
                      |.+ .|++++||+|++|+++|..++.|..|+++|.+
T Consensus         2 h~R-~HTgeKPy~C~~C~k~F~~~~~L~~H~r~H~~   36 (37)
T d1p7aa_           2 STR-GSTGIKPFQCPDCDRSFSRSDHLALHRKRHML   36 (37)
T ss_dssp             CSS-TTCCSSSBCCTTTCCCBSSHHHHHHHHGGGTC
T ss_pred             CCC-ccCCccCeEeCCCCCEecCHHHHHHHHhcCcC
Confidence            345 79999999999999999999999999999865

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.89  E-value=3.3e-10  Score=57.75  Aligned_cols=26  Identities=31%  Similarity=0.695  Sum_probs=19.1

Q ss_pred             CCcccCccccccCChHHHHHHHHHhc
Q psy11588        431 RPFVCDMCPSAFKLKKHLQQHYKVHL  456 (459)
Q Consensus       431 ~~~~C~~C~~~f~~~~~l~~H~~~H~  456 (459)
                      +||+|+.||++|...+.|.+|+++|+
T Consensus         1 KPy~C~eCgK~F~~~s~L~~HqriHT   26 (26)
T d1x6ea2           1 KPYKCLECGKAFSQNSGLINHQRIHT   26 (26)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHHH
T ss_pred             CCccCCCCcCeeccCcccccCccCCC
Confidence            57777777777777777777777774

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.83  E-value=1e-09  Score=58.60  Aligned_cols=28  Identities=21%  Similarity=0.651  Sum_probs=19.1

Q ss_pred             CCcccCc--cccccCChHHHHHHHHHhcCC
Q psy11588        431 RPFVCDM--CPSAFKLKKHLQQHYKVHLKK  458 (459)
Q Consensus       431 ~~~~C~~--C~~~f~~~~~l~~H~~~H~~~  458 (459)
                      +||.|++  |+++|++.+.|++|+++|+||
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HtGE   30 (30)
T d2glia3           1 KPHKCTFEGCRKSYSRLENLKTHLRSHTGE   30 (30)
T ss_dssp             CCCCCCSTTCCCCCSSHHHHHHHHHHTTTC
T ss_pred             CCeeCCCCCCCceECChhHhhhhcCcCcCC
Confidence            4667766  777777777777777777664

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.82  E-value=9.9e-10  Score=61.95  Aligned_cols=33  Identities=21%  Similarity=0.429  Sum_probs=29.4

Q ss_pred             hcCCCCccccccchhccCChHHHHHHHHHhCCC
Q psy11588        398 AHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTD  430 (459)
Q Consensus       398 ~H~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~  430 (459)
                      .|++++||+|++|++.|..++.|..|++.++++
T Consensus         2 ~HTgekP~~C~~C~k~F~~~~~L~~H~~~~H~~   34 (36)
T d2ct1a2           2 THSGEKPYECYICHARFTQSGTMKMHILQKHTE   34 (36)
T ss_dssp             CCSCCCSEECTTTCCEESCHHHHHHHHHHHSSS
T ss_pred             ccCCCCCEeCCCCcccccchHHHHHHcccccCC
Confidence            689999999999999999999999998766554

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.80  E-value=1.1e-09  Score=58.56  Aligned_cols=28  Identities=32%  Similarity=0.810  Sum_probs=20.2

Q ss_pred             CCcccCc--cccccCChHHHHHHHHHhcCC
Q psy11588        431 RPFVCDM--CPSAFKLKKHLQQHYKVHLKK  458 (459)
Q Consensus       431 ~~~~C~~--C~~~f~~~~~l~~H~~~H~~~  458 (459)
                      +||.|++  |+++|++.+.|.+|+++|+||
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HTGE   30 (30)
T d1ubdc3           1 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGD   30 (30)
T ss_dssp             CCEECCSTTCCCEESCHHHHHHHHHHHHCC
T ss_pred             CCccCCCCCCCceECcHHHcCccccccCCC
Confidence            5677766  777777777777777777765

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.76  E-value=1.7e-09  Score=58.40  Aligned_cols=29  Identities=34%  Similarity=0.777  Sum_probs=19.7

Q ss_pred             CCcccC--ccccccCChHHHHHHHHHhcCCC
Q psy11588        431 RPFVCD--MCPSAFKLKKHLQQHYKVHLKKD  459 (459)
Q Consensus       431 ~~~~C~--~C~~~f~~~~~l~~H~~~H~~~~  459 (459)
                      +||.|+  .|+++|++.++|.+|+++|+|++
T Consensus         1 kpf~C~~~~C~k~F~~~~~L~~H~r~HtgeK   31 (31)
T d1sp2a_           1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK   31 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTSCCC
T ss_pred             CcCCCcCCCCCcCcCChhHhhhhcCcccccC
Confidence            467774  47777777777777777777664

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=1.4e-09  Score=55.42  Aligned_cols=26  Identities=35%  Similarity=0.623  Sum_probs=23.7

Q ss_pred             CccccccchhccCChHHHHHHHHHhC
Q psy11588        403 QKSICDVCGKEFKMKKRLKEHMAVHT  428 (459)
Q Consensus       403 ~~~~C~~C~~~f~~~~~l~~H~~~H~  428 (459)
                      +||+|..|||+|..++.|..|+++|+
T Consensus         1 KPy~C~eCgK~F~~~s~L~~HqriHT   26 (26)
T d1x6ea2           1 KPYKCLECGKAFSQNSGLINHQRIHT   26 (26)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHHH
T ss_pred             CCccCCCCcCeeccCcccccCccCCC
Confidence            58999999999999999999999984

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.70  E-value=4.2e-09  Score=56.14  Aligned_cols=28  Identities=29%  Similarity=0.612  Sum_probs=25.4

Q ss_pred             Ccccccc--chhccCChHHHHHHHHHhCCC
Q psy11588        403 QKSICDV--CGKEFKMKKRLKEHMAVHTTD  430 (459)
Q Consensus       403 ~~~~C~~--C~~~f~~~~~l~~H~~~H~~~  430 (459)
                      +||.|++  |+++|..++.|..|+++|+||
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HtGE   30 (30)
T d2glia3           1 KPHKCTFEGCRKSYSRLENLKTHLRSHTGE   30 (30)
T ss_dssp             CCCCCCSTTCCCCCSSHHHHHHHHHHTTTC
T ss_pred             CCeeCCCCCCCceECChhHhhhhcCcCcCC
Confidence            5899988  999999999999999999986

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.65  E-value=4.2e-09  Score=56.27  Aligned_cols=28  Identities=36%  Similarity=0.782  Sum_probs=25.4

Q ss_pred             Ccccccc--chhccCChHHHHHHHHHhCCC
Q psy11588        403 QKSICDV--CGKEFKMKKRLKEHMAVHTTD  430 (459)
Q Consensus       403 ~~~~C~~--C~~~f~~~~~l~~H~~~H~~~  430 (459)
                      +||.|++  ||++|...+.|..|+++|+||
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HTGE   30 (30)
T d1ubdc3           1 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGD   30 (30)
T ss_dssp             CCEECCSTTCCCEESCHHHHHHHHHHHHCC
T ss_pred             CCccCCCCCCCceECcHHHcCccccccCCC
Confidence            5899987  999999999999999999886

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.64  E-value=8.2e-09  Score=55.90  Aligned_cols=29  Identities=45%  Similarity=0.835  Sum_probs=22.0

Q ss_pred             CCCcccCc--cccccCChHHHHHHHHHhcCC
Q psy11588        430 DRPFVCDM--CPSAFKLKKHLQQHYKVHLKK  458 (459)
Q Consensus       430 ~~~~~C~~--C~~~f~~~~~l~~H~~~H~~~  458 (459)
                      |+||.|++  |+++|++.++|.+|+++|+++
T Consensus         1 ErP~~C~~pgC~k~F~r~~~L~~H~r~Ht~k   31 (32)
T d1zfda_           1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQEK   31 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGTCC
T ss_pred             CcCeECcCCCCCCeeCCHHHHHHHhhhccCC
Confidence            57777876  888888888888888777754

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.62  E-value=8.1e-09  Score=55.69  Aligned_cols=29  Identities=31%  Similarity=0.710  Sum_probs=25.5

Q ss_pred             Cccccc--cchhccCChHHHHHHHHHhCCCC
Q psy11588        403 QKSICD--VCGKEFKMKKRLKEHMAVHTTDR  431 (459)
Q Consensus       403 ~~~~C~--~C~~~f~~~~~l~~H~~~H~~~~  431 (459)
                      +||.|+  .||++|...+.|..|+++|+||+
T Consensus         1 kpf~C~~~~C~k~F~~~~~L~~H~r~HtgeK   31 (31)
T d1sp2a_           1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK   31 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTSCCC
T ss_pred             CcCCCcCCCCCcCcCChhHhhhhcCcccccC
Confidence            589996  59999999999999999999885

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.60  E-value=4.6e-09  Score=63.12  Aligned_cols=40  Identities=25%  Similarity=0.499  Sum_probs=35.0

Q ss_pred             HHHHHHHhhcCCCCcccccc--chhccCChHHHHHHHHHhCCCC
Q psy11588        390 SLESHIRYAHTIRQKSICDV--CGKEFKMKKRLKEHMAVHTTDR  431 (459)
Q Consensus       390 ~l~~H~~~~H~~~~~~~C~~--C~~~f~~~~~l~~H~~~H~~~~  431 (459)
                      .|..|+  .|++++||.|++  |+++|..++.|..|+++|+||+
T Consensus         6 ~l~~h~--~h~gekpy~C~~~~C~k~F~~~~~L~~H~r~Htgek   47 (47)
T d1ncsa_           6 SIDKYV--KEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             SGGGSC--EEETTTEEECCCTTCCCEECSSSSHHHHHHHHTTTC
T ss_pred             hhcchh--hccCCCCeECCcCCCCccccCchHHHhhcccccCCC
Confidence            455566  489999999988  9999999999999999999985

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.57  E-value=1e-08  Score=54.09  Aligned_cols=27  Identities=30%  Similarity=0.803  Sum_probs=19.9

Q ss_pred             CCcccCc--cccccCChHHHHHHHHHhcC
Q psy11588        431 RPFVCDM--CPSAFKLKKHLQQHYKVHLK  457 (459)
Q Consensus       431 ~~~~C~~--C~~~f~~~~~l~~H~~~H~~  457 (459)
                      +||+|++  |+++|++.+.|.+|+++|+|
T Consensus         1 Kp~~C~~~gC~k~F~~~~~L~~H~r~HtG   29 (29)
T d1a1ia1           1 RPYACPVESCDRRFSRSADLTRHIRIHTG   29 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHTHHHHT
T ss_pred             CCeECCCCCCCcEECchhHhhhhcCccCC
Confidence            5777766  77777777777777777765

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.55  E-value=1.3e-08  Score=56.99  Aligned_cols=33  Identities=30%  Similarity=0.760  Sum_probs=30.8

Q ss_pred             ccccc--chhhccChhHHHHhhhhhcCCCccccCC
Q psy11588        182 HSCQK--CEESFDNCNNLWSHMFIKHENSDFVCNL  214 (459)
Q Consensus       182 ~~C~~--C~~~f~~~~~l~~H~~~~~~~~~~~C~~  214 (459)
                      |.|+.  |++.|.....|..|+++|.+++||.|++
T Consensus         2 f~C~~~~C~k~F~~~~~L~~H~r~Htgekpy~C~f   36 (36)
T d2dlka2           2 FSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEF   36 (36)
T ss_dssp             EECSCTTTCCEESSHHHHHHHHHHHHTSCCCSCCS
T ss_pred             eECCCCCCCCeeCChhHhccccCeeCCCCCEeCCC
Confidence            78887  9999999999999999999999999974

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.44  E-value=3.2e-08  Score=51.45  Aligned_cols=26  Identities=35%  Similarity=0.815  Sum_probs=17.6

Q ss_pred             CCcccCc--cccccCChHHHHHHHHHhc
Q psy11588        431 RPFVCDM--CPSAFKLKKHLQQHYKVHL  456 (459)
Q Consensus       431 ~~~~C~~--C~~~f~~~~~l~~H~~~H~  456 (459)
                      +||.|+.  |+++|++.++|++|+++|+
T Consensus         1 rPf~C~~~gC~K~F~~~~~L~~H~r~HT   28 (28)
T d1ubdc4           1 RPYVCPFDGCNKKFAQSTNLKSHILTHA   28 (28)
T ss_dssp             CCCCCCSTTCCCCCSSTTTTHHHHHHHC
T ss_pred             CCcCCCCCCcCCcCCCHHHHHHHHhhcc
Confidence            4667765  7777777777777777664

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.44  E-value=5.7e-08  Score=48.22  Aligned_cols=28  Identities=36%  Similarity=0.921  Sum_probs=20.8

Q ss_pred             CCCcccCccccccCChHHHHHHHHHhcC
Q psy11588        430 DRPFVCDMCPSAFKLKKHLQQHYKVHLK  457 (459)
Q Consensus       430 ~~~~~C~~C~~~f~~~~~l~~H~~~H~~  457 (459)
                      |+||.|.+||+.|.......+|.++|++
T Consensus         1 EkPf~C~~CgrkFArsderkRH~kiH~k   28 (28)
T d1a1ia3           1 EKPFACDICGRKFARSDERKRHTKIHLR   28 (28)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHGGGCC
T ss_pred             CCCcccchhhhhhhcchhhhhhhhhccC
Confidence            4677777777777777777777777753

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.37  E-value=4.3e-08  Score=51.63  Aligned_cols=27  Identities=30%  Similarity=0.677  Sum_probs=24.0

Q ss_pred             Ccccccc--chhccCChHHHHHHHHHhCC
Q psy11588        403 QKSICDV--CGKEFKMKKRLKEHMAVHTT  429 (459)
Q Consensus       403 ~~~~C~~--C~~~f~~~~~l~~H~~~H~~  429 (459)
                      +||+|++  |+++|.+.+.|..|+++|+|
T Consensus         1 Kp~~C~~~gC~k~F~~~~~L~~H~r~HtG   29 (29)
T d1a1ia1           1 RPYACPVESCDRRFSRSADLTRHIRIHTG   29 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHTHHHHT
T ss_pred             CCeECCCCCCCcEECchhHhhhhcCccCC
Confidence            5899988  99999999999999999975

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.36  E-value=1.1e-07  Score=51.41  Aligned_cols=29  Identities=28%  Similarity=0.489  Sum_probs=25.3

Q ss_pred             CCcccccc--chhccCChHHHHHHHHHhCCC
Q psy11588        402 RQKSICDV--CGKEFKMKKRLKEHMAVHTTD  430 (459)
Q Consensus       402 ~~~~~C~~--C~~~f~~~~~l~~H~~~H~~~  430 (459)
                      ++||.|++  |+++|...+.|..|+++|+..
T Consensus         1 ErP~~C~~pgC~k~F~r~~~L~~H~r~Ht~k   31 (32)
T d1zfda_           1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQEK   31 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGTCC
T ss_pred             CcCeECcCCCCCCeeCCHHHHHHHhhhccCC
Confidence            57899988  999999999999999999764

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.28  E-value=1.1e-07  Score=49.42  Aligned_cols=26  Identities=31%  Similarity=0.727  Sum_probs=22.8

Q ss_pred             Ccccccc--chhccCChHHHHHHHHHhC
Q psy11588        403 QKSICDV--CGKEFKMKKRLKEHMAVHT  428 (459)
Q Consensus       403 ~~~~C~~--C~~~f~~~~~l~~H~~~H~  428 (459)
                      +||.|++  ||++|...+.|..|+++|+
T Consensus         1 rPf~C~~~gC~K~F~~~~~L~~H~r~HT   28 (28)
T d1ubdc4           1 RPYVCPFDGCNKKFAQSTNLKSHILTHA   28 (28)
T ss_dssp             CCCCCCSTTCCCCCSSTTTTHHHHHHHC
T ss_pred             CCcCCCCCCcCCcCCCHHHHHHHHhhcc
Confidence            5889988  9999999999999999885

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.26  E-value=1.8e-07  Score=44.66  Aligned_cols=24  Identities=29%  Similarity=0.728  Sum_probs=12.3

Q ss_pred             cccCccccccCChHHHHHHHHHhc
Q psy11588        433 FVCDMCPSAFKLKKHLQQHYKVHL  456 (459)
Q Consensus       433 ~~C~~C~~~f~~~~~l~~H~~~H~  456 (459)
                      .+|++|++.|+++..|..|++.|+
T Consensus         2 hkc~~c~kcfsrkdklk~hmr~ht   25 (26)
T d2dmda2           2 HKCEVCGKCFSRKDKLKTHMRCHT   25 (26)
T ss_dssp             CCBTTTTBCCCCHHHHHHHGGGCC
T ss_pred             CccchhhhHhcchhHHHHHhhccC
Confidence            345555555555555555555544

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.24  E-value=2.3e-07  Score=44.34  Aligned_cols=26  Identities=50%  Similarity=0.884  Sum_probs=21.4

Q ss_pred             ccccccchhccCChHHHHHHHHHhCC
Q psy11588        404 KSICDVCGKEFKMKKRLKEHMAVHTT  429 (459)
Q Consensus       404 ~~~C~~C~~~f~~~~~l~~H~~~H~~  429 (459)
                      |.+|+.|++.|+.+..|..|++.|+|
T Consensus         1 phkc~~c~kcfsrkdklk~hmr~htg   26 (26)
T d2dmda2           1 PHKCEVCGKCFSRKDKLKTHMRCHTG   26 (26)
T ss_dssp             CCCBTTTTBCCCCHHHHHHHGGGCCC
T ss_pred             CCccchhhhHhcchhHHHHHhhccCC
Confidence            56788888888888888888888865

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.15  E-value=7.2e-07  Score=44.81  Aligned_cols=28  Identities=29%  Similarity=0.688  Sum_probs=17.5

Q ss_pred             CCCcccCccccccCChHHHHHHHHHhcC
Q psy11588        430 DRPFVCDMCPSAFKLKKHLQQHYKVHLK  457 (459)
Q Consensus       430 ~~~~~C~~C~~~f~~~~~l~~H~~~H~~  457 (459)
                      |+||.|++|+..|.++..+..|++.|-|
T Consensus         1 ekp~~cpic~qrfkrkdrmsyhvrshdg   28 (32)
T d2epqa1           1 EKPYSCPVCGLRFKRKDRMSYHVRSHDG   28 (32)
T ss_dssp             CCSSEETTTTEECSCHHHHHHHHHHHSC
T ss_pred             CCCcccchHHHHhhccccceEeeecccC
Confidence            4566666666666666666666666654

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.14  E-value=5e-07  Score=44.78  Aligned_cols=27  Identities=30%  Similarity=0.730  Sum_probs=24.6

Q ss_pred             CCccccccchhccCChHHHHHHHHHhC
Q psy11588        402 RQKSICDVCGKEFKMKKRLKEHMAVHT  428 (459)
Q Consensus       402 ~~~~~C~~C~~~f~~~~~l~~H~~~H~  428 (459)
                      ++||.|++||+.|..+....+|.++|.
T Consensus         1 EkPf~C~~CgrkFArsderkRH~kiH~   27 (28)
T d1a1ia3           1 EKPFACDICGRKFARSDERKRHTKIHL   27 (28)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHGGGC
T ss_pred             CCCcccchhhhhhhcchhhhhhhhhcc
Confidence            479999999999999999999999884

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.11  E-value=6.9e-07  Score=43.83  Aligned_cols=28  Identities=36%  Similarity=0.796  Sum_probs=16.3

Q ss_pred             CCCcccCccccccCChHHHHHHHHHhcC
Q psy11588        430 DRPFVCDMCPSAFKLKKHLQQHYKVHLK  457 (459)
Q Consensus       430 ~~~~~C~~C~~~f~~~~~l~~H~~~H~~  457 (459)
                      ++||+|..|.+.-.+.+.|..|++.|+|
T Consensus         1 erpfkcqlcsy~srnssqltvhlr~htg   28 (29)
T d2dmda3           1 ERPFKCQICPYASRNSSQLTVHLRSHTG   28 (29)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHTTCCS
T ss_pred             CCcceeeecccccCCchheEEeeecccC
Confidence            3556666666555566666666665554

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.08  E-value=7.5e-07  Score=45.89  Aligned_cols=32  Identities=28%  Similarity=0.747  Sum_probs=27.3

Q ss_pred             CccccccchhccCChHHHHHHHHHhCCCCCcc
Q psy11588        403 QKSICDVCGKEFKMKKRLKEHMAVHTTDRPFV  434 (459)
Q Consensus       403 ~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~  434 (459)
                      +...|..||+.|.....|.+|...|++|+||.
T Consensus         4 k~~~ce~cgk~frdvyhlnrhklshs~ekpys   35 (35)
T d2epra1           4 KQVACEICGKIFRDVYHLNRHKLSHSGEKPYS   35 (35)
T ss_dssp             CSEEETTTTEEESSHHHHHHHGGGSCSCCCCC
T ss_pred             hhhhHHHHHHHHHHHHHHHhhhcccCCCCCCC
Confidence            45678999999999999999999999999873

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.01  E-value=1.2e-06  Score=42.94  Aligned_cols=29  Identities=24%  Similarity=0.468  Sum_probs=26.0

Q ss_pred             CCccccccchhccCChHHHHHHHHHhCCC
Q psy11588        402 RQKSICDVCGKEFKMKKRLKEHMAVHTTD  430 (459)
Q Consensus       402 ~~~~~C~~C~~~f~~~~~l~~H~~~H~~~  430 (459)
                      ++||+|..|...-.+.++|..|++.|+|+
T Consensus         1 erpfkcqlcsy~srnssqltvhlr~htgd   29 (29)
T d2dmda3           1 ERPFKCQICPYASRNSSQLTVHLRSHTGD   29 (29)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHTTCCSC
T ss_pred             CCcceeeecccccCCchheEEeeecccCc
Confidence            47899999999999999999999999874

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.97  E-value=2.5e-06  Score=42.81  Aligned_cols=29  Identities=34%  Similarity=0.652  Sum_probs=25.5

Q ss_pred             CCccccccchhccCChHHHHHHHHHhCCC
Q psy11588        402 RQKSICDVCGKEFKMKKRLKEHMAVHTTD  430 (459)
Q Consensus       402 ~~~~~C~~C~~~f~~~~~l~~H~~~H~~~  430 (459)
                      ++||.|++|+..|..+..+..|++.|.|.
T Consensus         1 ekp~~cpic~qrfkrkdrmsyhvrshdg~   29 (32)
T d2epqa1           1 EKPYSCPVCGLRFKRKDRMSYHVRSHDGS   29 (32)
T ss_dssp             CCSSEETTTTEECSCHHHHHHHHHHHSCC
T ss_pred             CCCcccchHHHHhhccccceEeeecccCc
Confidence            47899999999999999999999998764

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.83  E-value=5.2e-06  Score=41.79  Aligned_cols=27  Identities=26%  Similarity=0.683  Sum_probs=19.0

Q ss_pred             CCcccCc--cccccCChHHHHHHHHHhcC
Q psy11588        431 RPFVCDM--CPSAFKLKKHLQQHYKVHLK  457 (459)
Q Consensus       431 ~~~~C~~--C~~~f~~~~~l~~H~~~H~~  457 (459)
                      +||.|.+  |+++++..++|++|++.++|
T Consensus         1 KPY~Ck~~gC~K~YtdPSSLRKH~k~~HG   29 (29)
T d2glia5           1 KPYVCKLPGCTKRYTDPSSLRKHVKTVHG   29 (29)
T ss_dssp             CCEECCSTTTCCEESSHHHHHHHHHHSCC
T ss_pred             CCeecccCCCCcccCCHHHHHHHHHhhCC
Confidence            4677765  77777777777777776654

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.80  E-value=5.5e-06  Score=42.62  Aligned_cols=31  Identities=39%  Similarity=0.865  Sum_probs=23.9

Q ss_pred             CccccccccccccChHHHHHHHHHcCCCCCc
Q psy11588        319 RDHQCSVCGKAFADITNMKVHMRIHTGEKKY  349 (459)
Q Consensus       319 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~  349 (459)
                      +...|..||+.|.+...|.+|...|.+++||
T Consensus         4 k~~~ce~cgk~frdvyhlnrhklshs~ekpy   34 (35)
T d2epra1           4 KQVACEICGKIFRDVYHLNRHKLSHSGEKPY   34 (35)
T ss_dssp             CSEEETTTTEEESSHHHHHHHGGGSCSCCCC
T ss_pred             hhhhHHHHHHHHHHHHHHHhhhcccCCCCCC
Confidence            3466788888888888888888888888776

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.80  E-value=8.4e-06  Score=40.23  Aligned_cols=26  Identities=38%  Similarity=0.641  Sum_probs=13.1

Q ss_pred             cccccchhccCChHHHHHHHHHhCCC
Q psy11588        405 SICDVCGKEFKMKKRLKEHMAVHTTD  430 (459)
Q Consensus       405 ~~C~~C~~~f~~~~~l~~H~~~H~~~  430 (459)
                      |.|++||......+-|..|++.|+++
T Consensus         2 YvC~~Cg~~C~KPSvL~KHIRsHT~~   27 (28)
T d1bboa1           2 YICEECGIRAKKPSMLKKHIRTHTDV   27 (28)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHHHTSSC
T ss_pred             ccccccCcccCCHHHHHHHHHHhcCC
Confidence            44555555555555555555555444

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.75  E-value=1.3e-05  Score=39.60  Aligned_cols=28  Identities=21%  Similarity=0.507  Sum_probs=26.0

Q ss_pred             CcccCccccccCChHHHHHHHHHhcCCC
Q psy11588        432 PFVCDMCPSAFKLKKHLQQHYKVHLKKD  459 (459)
Q Consensus       432 ~~~C~~C~~~f~~~~~l~~H~~~H~~~~  459 (459)
                      .|.|+.||......+.|++|+++|+++.
T Consensus         1 kYvC~~Cg~~C~KPSvL~KHIRsHT~~R   28 (28)
T d1bboa1           1 KYICEECGIRAKKPSMLKKHIRTHTDVR   28 (28)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHTSSCC
T ss_pred             CccccccCcccCCHHHHHHHHHHhcCCC
Confidence            3899999999999999999999999874

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.75  E-value=1.1e-05  Score=39.21  Aligned_cols=26  Identities=27%  Similarity=0.662  Sum_probs=18.3

Q ss_pred             CCcccCccccccCChHHHHHHHHHhc
Q psy11588        431 RPFVCDMCPSAFKLKKHLQQHYKVHL  456 (459)
Q Consensus       431 ~~~~C~~C~~~f~~~~~l~~H~~~H~  456 (459)
                      +||+|..|++.-...++|.+|+++|.
T Consensus         2 kp~kck~cdyaaadsssl~kh~rihs   27 (28)
T d2dmda1           2 KPYKCKTCDYAAADSSSLNKHLRIHS   27 (28)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHHSC
T ss_pred             CCcccccccchhcchhhHhhhhhccc
Confidence            56777777777777777777777764

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.73  E-value=7e-06  Score=39.99  Aligned_cols=24  Identities=38%  Similarity=0.618  Sum_probs=11.9

Q ss_pred             ccCccccccCChHHHHHHHHHhcC
Q psy11588        434 VCDMCPSAFKLKKHLQQHYKVHLK  457 (459)
Q Consensus       434 ~C~~C~~~f~~~~~l~~H~~~H~~  457 (459)
                      .|..||++|...+.|++|+.+|+|
T Consensus         4 vc~ecgkaf~essklkrh~lvhtg   27 (28)
T d1ubdc2           4 VCAECGKAFVESSKLKRHQLVHTG   27 (28)
T ss_dssp             ECTTTCCEESSHHHHHHHGGGTSC
T ss_pred             hHHHHhHHHHHHHHHHHHhhcccC
Confidence            344455555555555555544444

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.73  E-value=6.6e-06  Score=40.08  Aligned_cols=26  Identities=42%  Similarity=0.828  Sum_probs=22.1

Q ss_pred             cccccchhccCChHHHHHHHHHhCCC
Q psy11588        405 SICDVCGKEFKMKKRLKEHMAVHTTD  430 (459)
Q Consensus       405 ~~C~~C~~~f~~~~~l~~H~~~H~~~  430 (459)
                      ..|..||+.|...+.|++|..+|+|+
T Consensus         3 hvc~ecgkaf~essklkrh~lvhtge   28 (28)
T d1ubdc2           3 HVCAECGKAFVESSKLKRHQLVHTGE   28 (28)
T ss_dssp             EECTTTCCEESSHHHHHHHGGGTSCC
T ss_pred             chHHHHhHHHHHHHHHHHHhhcccCC
Confidence            56888999999999999998888875

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.72  E-value=1.4e-05  Score=38.29  Aligned_cols=26  Identities=27%  Similarity=0.450  Sum_probs=15.7

Q ss_pred             ccCccccccCChHHHHHHHHHhcCCC
Q psy11588        434 VCDMCPSAFKLKKHLQQHYKVHLKKD  459 (459)
Q Consensus       434 ~C~~C~~~f~~~~~l~~H~~~H~~~~  459 (459)
                      +|+.|.++|.++..|..|.+.|+|++
T Consensus         2 qcp~c~k~f~skyylkvhnr~htgek   27 (27)
T d2dlqa4           2 ECPTCHKKFLSKYYLKVHNRKHTGEK   27 (27)
T ss_dssp             CCTTTCCCCSSHHHHHHHHHHHSSCC
T ss_pred             cCcchHHHHHHhHhhhhccccccCCC
Confidence            45666666666666666666666553

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.57  E-value=3.7e-05  Score=38.07  Aligned_cols=26  Identities=19%  Similarity=0.425  Sum_probs=16.3

Q ss_pred             CCcccCccccccCChHHHHHHHHHhc
Q psy11588        431 RPFVCDMCPSAFKLKKHLQQHYKVHL  456 (459)
Q Consensus       431 ~~~~C~~C~~~f~~~~~l~~H~~~H~  456 (459)
                      +||+|..|.......++|..|+++-+
T Consensus         1 kpy~cqyc~yrsadssnlkthiktkh   26 (30)
T d1klra_           1 KTYQCQYCEFRSADSSNLKTHIKTKH   26 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHT
T ss_pred             CCccccccccccccchhhhhhhhccc
Confidence            46666666666666666666666544

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.56  E-value=2.7e-05  Score=37.27  Aligned_cols=26  Identities=38%  Similarity=0.577  Sum_probs=21.3

Q ss_pred             ccccchhccCChHHHHHHHHHhCCCC
Q psy11588        406 ICDVCGKEFKMKKRLKEHMAVHTTDR  431 (459)
Q Consensus       406 ~C~~C~~~f~~~~~l~~H~~~H~~~~  431 (459)
                      +|+.|.++|.++.-|..|-+.|+|++
T Consensus         2 qcp~c~k~f~skyylkvhnr~htgek   27 (27)
T d2dlqa4           2 ECPTCHKKFLSKYYLKVHNRKHTGEK   27 (27)
T ss_dssp             CCTTTCCCCSSHHHHHHHHHHHSSCC
T ss_pred             cCcchHHHHHHhHhhhhccccccCCC
Confidence            58888888888888888888888874

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=97.49  E-value=2.5e-05  Score=36.74  Aligned_cols=24  Identities=33%  Similarity=0.760  Sum_probs=18.3

Q ss_pred             cccCccccccCChHHHHHHHHHhc
Q psy11588        433 FVCDMCPSAFKLKKHLQQHYKVHL  456 (459)
Q Consensus       433 ~~C~~C~~~f~~~~~l~~H~~~H~  456 (459)
                      |+|..|.++|..++.|.+|+++|-
T Consensus         1 ykcglcersfveksalsrhqrvhk   24 (26)
T d1znfa_           1 YKCGLCERSFVEKSALSRHQRVHK   24 (26)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGGTC
T ss_pred             CcccchHHHHHHHHHHHHHHHhhc
Confidence            677778888888888888877763

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.42  E-value=4.1e-05  Score=38.46  Aligned_cols=27  Identities=19%  Similarity=0.533  Sum_probs=18.6

Q ss_pred             Ccccccc--chhccCChHHHHHHHHHhCC
Q psy11588        403 QKSICDV--CGKEFKMKKRLKEHMAVHTT  429 (459)
Q Consensus       403 ~~~~C~~--C~~~f~~~~~l~~H~~~H~~  429 (459)
                      +||.|.+  |++++...+.|+.|++.++|
T Consensus         1 KPY~Ck~~gC~K~YtdPSSLRKH~k~~HG   29 (29)
T d2glia5           1 KPYVCKLPGCTKRYTDPSSLRKHVKTVHG   29 (29)
T ss_dssp             CCEECCSTTTCCEESSHHHHHHHHHHSCC
T ss_pred             CCeecccCCCCcccCCHHHHHHHHHhhCC
Confidence            4667766  77777777777777776554

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.37  E-value=5.2e-05  Score=41.37  Aligned_cols=27  Identities=22%  Similarity=0.682  Sum_probs=22.9

Q ss_pred             CCCCCcccCccccccCChHHHHHHHHH
Q psy11588        428 TTDRPFVCDMCPSAFKLKKHLQQHYKV  454 (459)
Q Consensus       428 ~~~~~~~C~~C~~~f~~~~~l~~H~~~  454 (459)
                      +|.+||.|.+|++.|.+..++.+|...
T Consensus         1 TGiKPYeC~~C~KrFMWRDSF~RH~~~   27 (44)
T d2csha2           1 TGIKPYECNICAKRFMWRDSFHRHVTS   27 (44)
T ss_dssp             CCCCCEECSSSCCEESCHHHHHHHHHH
T ss_pred             CCCCceeccchhhhhhhHHHHHHhhhh
Confidence            467899999999999999999998643

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.37  E-value=5.5e-05  Score=36.66  Aligned_cols=26  Identities=19%  Similarity=0.482  Sum_probs=22.5

Q ss_pred             CccccccchhccCChHHHHHHHHHhC
Q psy11588        403 QKSICDVCGKEFKMKKRLKEHMAVHT  428 (459)
Q Consensus       403 ~~~~C~~C~~~f~~~~~l~~H~~~H~  428 (459)
                      +||+|..|...-...+.|..|+++|.
T Consensus         2 kp~kck~cdyaaadsssl~kh~rihs   27 (28)
T d2dmda1           2 KPYKCKTCDYAAADSSSLNKHLRIHS   27 (28)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHHSC
T ss_pred             CCcccccccchhcchhhHhhhhhccc
Confidence            68888899888888888999988885

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=97.31  E-value=7.7e-05  Score=36.59  Aligned_cols=25  Identities=40%  Similarity=0.833  Sum_probs=16.3

Q ss_pred             CCcccCc--cccccCChHHHHHHHHHh
Q psy11588        431 RPFVCDM--CPSAFKLKKHLQQHYKVH  455 (459)
Q Consensus       431 ~~~~C~~--C~~~f~~~~~l~~H~~~H  455 (459)
                      .||+|+.  |++.|+..+.|++|.++|
T Consensus         2 ~py~c~hegcdk~fs~ps~lkrhekvh   28 (29)
T d2j7ja2           2 LPYECPHEGCDKRFSLPSRLKRHEKVH   28 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHHHHH
T ss_pred             CCccCCccCccccccCHHHHhhhhhcc
Confidence            3566643  667777777777776666

>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=97.29  E-value=8.1e-05  Score=36.67  Aligned_cols=28  Identities=32%  Similarity=0.701  Sum_probs=22.5

Q ss_pred             CCcccCc--cccccCChHHHHHHHHHhcCC
Q psy11588        431 RPFVCDM--CPSAFKLKKHLQQHYKVHLKK  458 (459)
Q Consensus       431 ~~~~C~~--C~~~f~~~~~l~~H~~~H~~~  458 (459)
                      +||.|..  |++.|.+...|.+|..+|+|+
T Consensus         1 ~pfpc~~egc~kgf~tlhhltrhs~thtge   30 (30)
T d1tf3a2           1 KPFPCKEEGCEKGFTSLHHLTRHSLTHTGE   30 (30)
T ss_dssp             CSEECCCSSCCCEESSTTHHHHHHHHHHTC
T ss_pred             CCcCcccccccccchhhhhhhhhhccccCC
Confidence            5778854  888888888888888888875

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.27  E-value=7.4e-05  Score=36.79  Aligned_cols=23  Identities=39%  Similarity=0.820  Sum_probs=20.3

Q ss_pred             CcccCccccccCChHHHHHHHHH
Q psy11588        432 PFVCDMCPSAFKLKKHLQQHYKV  454 (459)
Q Consensus       432 ~~~C~~C~~~f~~~~~l~~H~~~  454 (459)
                      ||.|..|+.+|.++.+|..||+.
T Consensus         1 py~C~~CnF~FKTKGNLTKHmkS   23 (29)
T d1bboa2           1 PYHCTYCNFSFKTKGNLTKHMKS   23 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHS
T ss_pred             CcccceeeeeEeeccchhHhhhh
Confidence            78899999999999999999874

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=97.23  E-value=7.9e-05  Score=35.01  Aligned_cols=23  Identities=35%  Similarity=0.686  Sum_probs=15.5

Q ss_pred             cccccchhccCChHHHHHHHHHh
Q psy11588        405 SICDVCGKEFKMKKRLKEHMAVH  427 (459)
Q Consensus       405 ~~C~~C~~~f~~~~~l~~H~~~H  427 (459)
                      |+|..|.++|..+++|.+|+++|
T Consensus         1 ykcglcersfveksalsrhqrvh   23 (26)
T d1znfa_           1 YKCGLCERSFVEKSALSRHQRVH   23 (26)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGGT
T ss_pred             CcccchHHHHHHHHHHHHHHHhh
Confidence            46666667777777777766665

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.19  E-value=0.00011  Score=40.05  Aligned_cols=29  Identities=38%  Similarity=0.772  Sum_probs=19.7

Q ss_pred             CccccccchhccCChHHHHHHHHHhCCCC
Q psy11588        403 QKSICDVCGKEFKMKKRLKEHMAVHTTDR  431 (459)
Q Consensus       403 ~~~~C~~C~~~f~~~~~l~~H~~~H~~~~  431 (459)
                      +.|+|.+|++.|.+..+|--||+.|..++
T Consensus         4 r~~~C~~C~k~F~s~qALGGH~~~Hr~~r   32 (37)
T d1njqa_           4 RSYTCSFCKREFRSAQALGGHMNVHRRDR   32 (37)
T ss_dssp             SSEECTTTCCEESSHHHHHHHHHTTCCSC
T ss_pred             CccCCCCCCCccCCcccccchHhhhcchH
Confidence            45677777777777777777777765543

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.13  E-value=0.00017  Score=35.40  Aligned_cols=25  Identities=28%  Similarity=0.700  Sum_probs=11.9

Q ss_pred             cccCccccccCChHHHHHHHHHhcC
Q psy11588        433 FVCDMCPSAFKLKKHLQQHYKVHLK  457 (459)
Q Consensus       433 ~~C~~C~~~f~~~~~l~~H~~~H~~  457 (459)
                      |.|.+|...|.+.-.|+.||-.|+|
T Consensus         5 ftcs~cqe~f~rrmelr~hmvshtg   29 (30)
T d2dlqa3           5 FTCSVCQETFRRRMELRLHMVSHTG   29 (30)
T ss_dssp             EECSSSCCEESSHHHHHHHHHHHSS
T ss_pred             EEeHHHHHHHHHHHhheeeeecccC
Confidence            4444444444444444444444444

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=97.13  E-value=9.3e-05  Score=37.49  Aligned_cols=26  Identities=35%  Similarity=0.779  Sum_probs=15.5

Q ss_pred             CcccCccccccCChHHHHHHH-HHhcC
Q psy11588        432 PFVCDMCPSAFKLKKHLQQHY-KVHLK  457 (459)
Q Consensus       432 ~~~C~~C~~~f~~~~~l~~H~-~~H~~  457 (459)
                      ||.|.+|++.|+++..|.+|. +.|.|
T Consensus         1 Pf~C~~C~R~FaRrDLlLRH~qKlH~g   27 (31)
T d2adra2           1 PYPCGLCNRAFTRRDLLIRHAQKIHSG   27 (31)
T ss_dssp             SEECTTTCCEESSHHHHHHHHTTTSCC
T ss_pred             CcccccccchhhHHHHHHHHHHHHhcC
Confidence            566666666666666666664 34443

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.11  E-value=0.00026  Score=34.69  Aligned_cols=29  Identities=34%  Similarity=0.668  Sum_probs=26.9

Q ss_pred             CCccccccchhccCChHHHHHHHHHhCCC
Q psy11588        402 RQKSICDVCGKEFKMKKRLKEHMAVHTTD  430 (459)
Q Consensus       402 ~~~~~C~~C~~~f~~~~~l~~H~~~H~~~  430 (459)
                      ++.|.|..|...|..+-.|+.||-.|+|+
T Consensus         2 eqvftcs~cqe~f~rrmelr~hmvshtge   30 (30)
T d2dlqa3           2 EQVFTCSVCQETFRRRMELRLHMVSHTGE   30 (30)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHHHHSSS
T ss_pred             cceEEeHHHHHHHHHHHhheeeeecccCC
Confidence            46799999999999999999999999985

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=97.09  E-value=0.00015  Score=35.51  Aligned_cols=25  Identities=40%  Similarity=0.692  Sum_probs=20.4

Q ss_pred             Ccccccc--chhccCChHHHHHHHHHh
Q psy11588        403 QKSICDV--CGKEFKMKKRLKEHMAVH  427 (459)
Q Consensus       403 ~~~~C~~--C~~~f~~~~~l~~H~~~H  427 (459)
                      .||+|+.  |++.|+..+.|++|.++|
T Consensus         2 ~py~c~hegcdk~fs~ps~lkrhekvh   28 (29)
T d2j7ja2           2 LPYECPHEGCDKRFSLPSRLKRHEKVH   28 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHHHHH
T ss_pred             CCccCCccCccccccCHHHHhhhhhcc
Confidence            5788876  888888888888888876

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.09  E-value=0.00023  Score=35.19  Aligned_cols=27  Identities=33%  Similarity=0.439  Sum_probs=15.6

Q ss_pred             CccccccccccCCHHHHHHHHHHHcCC
Q psy11588        291 DHCCHICKKVFLRYRNLVCHIKAVHEK  317 (459)
Q Consensus       291 ~~~C~~C~~~f~~~~~l~~H~~~~h~~  317 (459)
                      ||+|..|.+.....++|+.|+++.|..
T Consensus         2 py~cqyc~yrsadssnlkthiktkhsk   28 (30)
T d1klra_           2 TYQCQYCEFRSADSSNLKTHIKTKHSK   28 (30)
T ss_dssp             CCCCSSSSCCCSCSHHHHHHHHHHTSS
T ss_pred             Cccccccccccccchhhhhhhhccccc
Confidence            555666666656666666666555543

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.03  E-value=0.00025  Score=34.99  Aligned_cols=26  Identities=35%  Similarity=0.654  Sum_probs=16.9

Q ss_pred             CCcccCccccccCChHHHHHHHHHhc
Q psy11588        431 RPFVCDMCPSAFKLKKHLQQHYKVHL  456 (459)
Q Consensus       431 ~~~~C~~C~~~f~~~~~l~~H~~~H~  456 (459)
                      +||+|+.|..-..+.++|..|++.-+
T Consensus         1 rPFkC~~CsFDtkq~SnL~kH~kk~H   26 (29)
T d1x5wa2           1 RPFKCNYCSFDTKQPSNLSKHMKKFH   26 (29)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHHHHH
T ss_pred             CCcccceecccccCcchHHHHHHHHc
Confidence            46667777666666777777765443

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.96  E-value=0.00012  Score=37.08  Aligned_cols=25  Identities=28%  Similarity=0.744  Sum_probs=12.8

Q ss_pred             CcccCc--cccccCChHHHHHHH-HHhc
Q psy11588        432 PFVCDM--CPSAFKLKKHLQQHY-KVHL  456 (459)
Q Consensus       432 ~~~C~~--C~~~f~~~~~l~~H~-~~H~  456 (459)
                      ||.|++  |.+.|++.+.--+|+ ++|.
T Consensus         2 PY~C~~~gC~KafsNsSDraKHqnRTHs   29 (31)
T d2glia4           2 PYMCEHEGCSKAFSNASDRAKHQNRTHS   29 (31)
T ss_dssp             CEECCSTTCCCEESSSSTTHHHHHHTTC
T ss_pred             CccccCCChhhhhcchhhhhhhcccccc
Confidence            455544  555555555555554 4443

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.92  E-value=0.00032  Score=38.16  Aligned_cols=29  Identities=28%  Similarity=0.698  Sum_probs=26.4

Q ss_pred             CCCcccCccccccCChHHHHHHHHHhcCC
Q psy11588        430 DRPFVCDMCPSAFKLKKHLQQHYKVHLKK  458 (459)
Q Consensus       430 ~~~~~C~~C~~~f~~~~~l~~H~~~H~~~  458 (459)
                      .+.|+|.+|++.|.+...|==||+.|..+
T Consensus         3 ~r~~~C~~C~k~F~s~qALGGH~~~Hr~~   31 (37)
T d1njqa_           3 PRSYTCSFCKREFRSAQALGGHMNVHRRD   31 (37)
T ss_dssp             SSSEECTTTCCEESSHHHHHHHHHTTCCS
T ss_pred             CCccCCCCCCCccCCcccccchHhhhcch
Confidence            46799999999999999999999999765

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.88  E-value=0.00026  Score=34.81  Aligned_cols=23  Identities=35%  Similarity=0.590  Sum_probs=17.3

Q ss_pred             ccccccchhccCChHHHHHHHHH
Q psy11588        404 KSICDVCGKEFKMKKRLKEHMAV  426 (459)
Q Consensus       404 ~~~C~~C~~~f~~~~~l~~H~~~  426 (459)
                      ||.|..|..+|.++.+|..||+.
T Consensus         1 py~C~~CnF~FKTKGNLTKHmkS   23 (29)
T d1bboa2           1 PYHCTYCNFSFKTKGNLTKHMKS   23 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHS
T ss_pred             CcccceeeeeEeeccchhHhhhh
Confidence            57777777777777777777764

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.79  E-value=0.00016  Score=36.58  Aligned_cols=28  Identities=21%  Similarity=0.558  Sum_probs=22.3

Q ss_pred             Ccccccc--chhccCChHHHHHHH-HHhCCC
Q psy11588        403 QKSICDV--CGKEFKMKKRLKEHM-AVHTTD  430 (459)
Q Consensus       403 ~~~~C~~--C~~~f~~~~~l~~H~-~~H~~~  430 (459)
                      +||.|++  |.|.|++.+.-..|+ ++|..|
T Consensus         1 kPY~C~~~gC~KafsNsSDraKHqnRTHs~e   31 (31)
T d2glia4           1 KPYMCEHEGCSKAFSNASDRAKHQNRTHSNE   31 (31)
T ss_dssp             CCEECCSTTCCCEESSSSTTHHHHHHTTCSC
T ss_pred             CCccccCCChhhhhcchhhhhhhccccccCC
Confidence            4788887  888888888888887 677653

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.73  E-value=0.00041  Score=37.77  Aligned_cols=26  Identities=23%  Similarity=0.553  Sum_probs=23.1

Q ss_pred             CCCCccccccchhccCChHHHHHHHH
Q psy11588        400 TIRQKSICDVCGKEFKMKKRLKEHMA  425 (459)
Q Consensus       400 ~~~~~~~C~~C~~~f~~~~~l~~H~~  425 (459)
                      ++-+||.|.+|+|.|..+..+.+|..
T Consensus         1 TGiKPYeC~~C~KrFMWRDSF~RH~~   26 (44)
T d2csha2           1 TGIKPYECNICAKRFMWRDSFHRHVT   26 (44)
T ss_dssp             CCCCCEECSSSCCEESCHHHHHHHHH
T ss_pred             CCCCceeccchhhhhhhHHHHHHhhh
Confidence            36789999999999999999999974

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.64  E-value=0.00055  Score=32.07  Aligned_cols=22  Identities=41%  Similarity=0.831  Sum_probs=19.3

Q ss_pred             CcccCccccccCChHHHHHHHH
Q psy11588        432 PFVCDMCPSAFKLKKHLQQHYK  453 (459)
Q Consensus       432 ~~~C~~C~~~f~~~~~l~~H~~  453 (459)
                      ||+|+-|...|.++..|+.||.
T Consensus         2 pykcsscsqqfmqkkdlqshmi   23 (26)
T d2dlqa1           2 PYKCSSCSQQFMQKKDLQSHMI   23 (26)
T ss_dssp             SEECSSSCCEESSHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHHHHH
Confidence            7899999999999999999874

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.58  E-value=0.00087  Score=33.03  Aligned_cols=27  Identities=26%  Similarity=0.384  Sum_probs=17.7

Q ss_pred             CCccccccccccCCHHHHHHHHHHHcC
Q psy11588        290 KDHCCHICKKVFLRYRNLVCHIKAVHE  316 (459)
Q Consensus       290 ~~~~C~~C~~~f~~~~~l~~H~~~~h~  316 (459)
                      +||+|+.|.......++|..|++..|.
T Consensus         1 rPFkC~~CsFDtkq~SnL~kH~kk~H~   27 (29)
T d1x5wa2           1 RPFKCNYCSFDTKQPSNLSKHMKKFHG   27 (29)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHHHHHS
T ss_pred             CCcccceecccccCcchHHHHHHHHcc
Confidence            356677777666667777777665553

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=96.48  E-value=0.00082  Score=33.98  Aligned_cols=22  Identities=23%  Similarity=0.557  Sum_probs=12.4

Q ss_pred             ccccccchhccCChHHHHHHHH
Q psy11588        404 KSICDVCGKEFKMKKRLKEHMA  425 (459)
Q Consensus       404 ~~~C~~C~~~f~~~~~l~~H~~  425 (459)
                      ||.|.+|++.|..+..|.+|.+
T Consensus         1 Pf~C~~C~R~FaRrDLlLRH~q   22 (31)
T d2adra2           1 PYPCGLCNRAFTRRDLLIRHAQ   22 (31)
T ss_dssp             SEECTTTCCEESSHHHHHHHHT
T ss_pred             CcccccccchhhHHHHHHHHHH
Confidence            4555555555555555555553

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.36  E-value=0.0014  Score=35.21  Aligned_cols=26  Identities=38%  Similarity=0.814  Sum_probs=15.4

Q ss_pred             CCCccc--CccccccCChHHHHHHHHHh
Q psy11588        430 DRPFVC--DMCPSAFKLKKHLQQHYKVH  455 (459)
Q Consensus       430 ~~~~~C--~~C~~~f~~~~~l~~H~~~H  455 (459)
                      ++||.|  +-|+.+|.+...|..|.+.|
T Consensus         4 dkPF~C~~pGC~q~F~neDhL~vHk~KH   31 (38)
T d1bhia_           4 DKPFLCTAPGCGQRFTNEDHLAVHKHKH   31 (38)
T ss_dssp             CCCEECCCTTTCCEESSHHHHHHHHHHH
T ss_pred             CCceecCCCCccccccchHHHHHhhhhh
Confidence            556666  34666666666666665554

>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=96.34  E-value=0.00083  Score=33.00  Aligned_cols=28  Identities=29%  Similarity=0.495  Sum_probs=23.0

Q ss_pred             Ccccccc--chhccCChHHHHHHHHHhCCC
Q psy11588        403 QKSICDV--CGKEFKMKKRLKEHMAVHTTD  430 (459)
Q Consensus       403 ~~~~C~~--C~~~f~~~~~l~~H~~~H~~~  430 (459)
                      +||.|..  |.+.|.+.-.|.+|..+|+|+
T Consensus         1 ~pfpc~~egc~kgf~tlhhltrhs~thtge   30 (30)
T d1tf3a2           1 KPFPCKEEGCEKGFTSLHHLTRHSLTHTGE   30 (30)
T ss_dssp             CSEECCCSSCCCEESSTTHHHHHHHHHHTC
T ss_pred             CCcCcccccccccchhhhhhhhhhccccCC
Confidence            4677765  889999999999998888875

>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.30  E-value=0.0015  Score=31.64  Aligned_cols=23  Identities=26%  Similarity=0.485  Sum_probs=12.2

Q ss_pred             cccCccccccCChHHHHHHHHHh
Q psy11588        433 FVCDMCPSAFKLKKHLQQHYKVH  455 (459)
Q Consensus       433 ~~C~~C~~~f~~~~~l~~H~~~H  455 (459)
                      -+|+.|+++.+++..|+.|.++|
T Consensus         3 ekc~ecsyscsskaalrvh~rih   25 (28)
T d1x5wa1           3 EKCSECSYSCSSKAALRIHERIH   25 (28)
T ss_dssp             EECSSSSCEESSHHHHHHHHGGG
T ss_pred             ccCcccccccCcHHHHHHhhccc
Confidence            34555555555555555555555

>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=96.09  E-value=0.0022  Score=30.14  Aligned_cols=22  Identities=27%  Similarity=0.714  Sum_probs=15.6

Q ss_pred             cccCccccccCChHHHHHHHHH
Q psy11588        433 FVCDMCPSAFKLKKHLQQHYKV  454 (459)
Q Consensus       433 ~~C~~C~~~f~~~~~l~~H~~~  454 (459)
                      |.|++|-+.|+++.++..|.++
T Consensus         2 ypcp~cfkeftrkdnm~ahvki   23 (26)
T d2drpa2           2 YPCPFCFKEFTRKDNMTAHVKI   23 (26)
T ss_dssp             EECTTTCCEESCHHHHHHHHHH
T ss_pred             cCCchhhHHhccccCceEEEEE
Confidence            6677777777777777777664

>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.02  E-value=0.0023  Score=31.02  Aligned_cols=25  Identities=24%  Similarity=0.450  Sum_probs=19.7

Q ss_pred             ccccccchhccCChHHHHHHHHHhC
Q psy11588        404 KSICDVCGKEFKMKKRLKEHMAVHT  428 (459)
Q Consensus       404 ~~~C~~C~~~f~~~~~l~~H~~~H~  428 (459)
                      |-+|+.|..+.+++.+|+.|.++|-
T Consensus         2 pekc~ecsyscsskaalrvh~rihc   26 (28)
T d1x5wa1           2 PEKCSECSYSCSSKAALRIHERIHC   26 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHGGGC
T ss_pred             CccCcccccccCcHHHHHHhhcccc
Confidence            4578888888888888888888774

>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.94  E-value=0.0033  Score=30.21  Aligned_cols=22  Identities=32%  Similarity=0.679  Sum_probs=15.0

Q ss_pred             CcccCccccccCChHHHHHHHH
Q psy11588        432 PFVCDMCPSAFKLKKHLQQHYK  453 (459)
Q Consensus       432 ~~~C~~C~~~f~~~~~l~~H~~  453 (459)
                      ||+|..||+.+.++.+|..|..
T Consensus         1 pf~c~kcgkcyfrkenllehea   22 (28)
T d2dlqa2           1 PFECPKCGKCYFRKENLLEHEA   22 (28)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHHH
T ss_pred             CCccccchhhhhhHhHHHHHHH
Confidence            5677777777777777776653

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.78  E-value=0.0031  Score=29.49  Aligned_cols=21  Identities=24%  Similarity=0.645  Sum_probs=9.7

Q ss_pred             CccccccccccCCHHHHHHHH
Q psy11588        291 DHCCHICKKVFLRYRNLVCHI  311 (459)
Q Consensus       291 ~~~C~~C~~~f~~~~~l~~H~  311 (459)
                      ||+|..|...|..+.+|+.|+
T Consensus         2 pykcsscsqqfmqkkdlqshm   22 (26)
T d2dlqa1           2 PYKCSSCSQQFMQKKDLQSHM   22 (26)
T ss_dssp             SEECSSSCCEESSHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHHHH
Confidence            344444444444444444444

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.75  E-value=0.0033  Score=33.76  Aligned_cols=28  Identities=25%  Similarity=0.491  Sum_probs=21.7

Q ss_pred             CCCcccc--ccchhccCChHHHHHHHHHhC
Q psy11588        401 IRQKSIC--DVCGKEFKMKKRLKEHMAVHT  428 (459)
Q Consensus       401 ~~~~~~C--~~C~~~f~~~~~l~~H~~~H~  428 (459)
                      .++||.|  +-|+.+|.+...|..|...|.
T Consensus         3 ddkPF~C~~pGC~q~F~neDhL~vHk~KH~   32 (38)
T d1bhia_           3 DDKPFLCTAPGCGQRFTNEDHLAVHKHKHE   32 (38)
T ss_dssp             TCCCEECCCTTTCCEESSHHHHHHHHHHHH
T ss_pred             CCCceecCCCCccccccchHHHHHhhhhhe
Confidence            3678888  458888888888888887764

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.53  E-value=0.0041  Score=35.11  Aligned_cols=24  Identities=29%  Similarity=0.581  Sum_probs=18.7

Q ss_pred             CcccCccccccCChHHHHHHHHHh
Q psy11588        432 PFVCDMCPSAFKLKKHLQQHYKVH  455 (459)
Q Consensus       432 ~~~C~~C~~~f~~~~~l~~H~~~H  455 (459)
                      .|.|..|+|.|+....|++|...|
T Consensus         6 l~pCG~CgK~Ftd~~rLr~HEAQH   29 (53)
T d2eppa1           6 ILPCGLCGKVFTDANRLRQHEAQH   29 (53)
T ss_dssp             CCCCTTTCCCCSCHHHHHHHHHHH
T ss_pred             eeeccccccccCCHHHHhHhHHhc
Confidence            477888888888888888887766

>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.52  E-value=0.0037  Score=30.03  Aligned_cols=23  Identities=39%  Similarity=0.522  Sum_probs=20.0

Q ss_pred             ccccccchhccCChHHHHHHHHH
Q psy11588        404 KSICDVCGKEFKMKKRLKEHMAV  426 (459)
Q Consensus       404 ~~~C~~C~~~f~~~~~l~~H~~~  426 (459)
                      ||+|..||+.+-.+.+|..|...
T Consensus         1 pf~c~kcgkcyfrkenllehear   23 (28)
T d2dlqa2           1 PFECPKCGKCYFRKENLLEHEAR   23 (28)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHHHH
T ss_pred             CCccccchhhhhhHhHHHHHHHH
Confidence            68999999999999999998653

>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.09  E-value=0.007  Score=29.15  Aligned_cols=24  Identities=29%  Similarity=0.598  Sum_probs=13.4

Q ss_pred             ccccccccccCCHHHHHHHHHHHc
Q psy11588        292 HCCHICKKVFLRYRNLVCHIKAVH  315 (459)
Q Consensus       292 ~~C~~C~~~f~~~~~l~~H~~~~h  315 (459)
                      |+|+.|+.....+++|..|++..|
T Consensus         3 ~qcphc~tiiarksdlrvhlrnlh   26 (28)
T d2ct1a1           3 FHCPHCDTVIARKSDLGVHLRKQH   26 (28)
T ss_dssp             EECSSSSCEESSHHHHHHHHHHTS
T ss_pred             ccCCcchhheeehhhhhHHhhhcc
Confidence            455555555555555555555444

>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=94.94  E-value=0.0093  Score=27.95  Aligned_cols=24  Identities=38%  Similarity=0.712  Sum_probs=16.0

Q ss_pred             ccccccccccCCHHHHHHHHHHHc
Q psy11588        292 HCCHICKKVFLRYRNLVCHIKAVH  315 (459)
Q Consensus       292 ~~C~~C~~~f~~~~~l~~H~~~~h  315 (459)
                      |.|+.|-+.|..+.++..|++..|
T Consensus         2 ypcp~cfkeftrkdnm~ahvkiih   25 (26)
T d2drpa2           2 YPCPFCFKEFTRKDNMTAHVKIIH   25 (26)
T ss_dssp             EECTTTCCEESCHHHHHHHHHHHT
T ss_pred             cCCchhhHHhccccCceEEEEEec
Confidence            566777777777777777766544

>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.77  E-value=0.012  Score=30.32  Aligned_cols=26  Identities=23%  Similarity=0.547  Sum_probs=15.2

Q ss_pred             CcccCccccccCChHHHHHHHHHhcC
Q psy11588        432 PFVCDMCPSAFKLKKHLQQHYKVHLK  457 (459)
Q Consensus       432 ~~~C~~C~~~f~~~~~l~~H~~~H~~  457 (459)
                      .|.|..|++.|+++..+.+|-...+|
T Consensus         4 afvcskcgktftrrntm~rha~nc~g   29 (37)
T d1x6ha1           4 AFVCSKCGKTFTRRNTMARHADNCAG   29 (37)
T ss_dssp             CEECSSSCCEESCHHHHHHHHHHCCC
T ss_pred             eeeecccccchhcchHHHHHhhhcCC
Confidence            35666666666666666666554443

>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.42  E-value=0.015  Score=27.96  Aligned_cols=22  Identities=23%  Similarity=0.496  Sum_probs=10.6

Q ss_pred             cccCCCCCcCCChHHHHHHHHh
Q psy11588        376 VVCSYCGNTYKNPKSLESHIRY  397 (459)
Q Consensus       376 ~~C~~C~~~f~~~~~l~~H~~~  397 (459)
                      |.|+.|+.....++.|..|++.
T Consensus         3 ~qcphc~tiiarksdlrvhlrn   24 (28)
T d2ct1a1           3 FHCPHCDTVIARKSDLGVHLRK   24 (28)
T ss_dssp             EECSSSSCEESSHHHHHHHHHH
T ss_pred             ccCCcchhheeehhhhhHHhhh
Confidence            3444444444444455544443

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.88  E-value=0.017  Score=32.55  Aligned_cols=26  Identities=38%  Similarity=0.672  Sum_probs=20.9

Q ss_pred             CccccccchhccCChHHHHHHHHHhC
Q psy11588        403 QKSICDVCGKEFKMKKRLKEHMAVHT  428 (459)
Q Consensus       403 ~~~~C~~C~~~f~~~~~l~~H~~~H~  428 (459)
                      ..|.|..|||.|.....|+.|...|.
T Consensus         5 ~l~pCG~CgK~Ftd~~rLr~HEAQHG   30 (53)
T d2eppa1           5 GILPCGLCGKVFTDANRLRQHEAQHG   30 (53)
T ss_dssp             CCCCCTTTCCCCSCHHHHHHHHHHHT
T ss_pred             ceeeccccccccCCHHHHhHhHHhcC
Confidence            35788888888888888888887774

>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.60  E-value=0.014  Score=30.60  Aligned_cols=20  Identities=35%  Similarity=0.388  Sum_probs=12.7

Q ss_pred             hhccCChHHHHHHHHHhCCC
Q psy11588        411 GKEFKMKKRLKEHMAVHTTD  430 (459)
Q Consensus       411 ~~~f~~~~~l~~H~~~H~~~  430 (459)
                      ++.|.....|..||++|+||
T Consensus        14 ~~pf~a~YkLv~H~R~HTgE   33 (33)
T d2glia2          14 LRPFKAQYMLVVHMRRHTGE   33 (33)
T ss_dssp             TCCCSSHHHHHHHTHHHHCC
T ss_pred             CCcchhHHHHHHHHhhcCCC
Confidence            34566666666666666664

>d1tf3a1 g.37.1.1 (A:1-40) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=93.29  E-value=0.035  Score=27.66  Aligned_cols=28  Identities=25%  Similarity=0.593  Sum_probs=18.9

Q ss_pred             CCcccC--ccccccCChHHHHHHHHHhcCC
Q psy11588        431 RPFVCD--MCPSAFKLKKHLQQHYKVHLKK  458 (459)
Q Consensus       431 ~~~~C~--~C~~~f~~~~~l~~H~~~H~~~  458 (459)
                      +.|.|+  .|+..|.....|+.|+-.|+||
T Consensus         2 k~~iCsf~dC~A~ynk~wkL~AHLckHTGe   31 (31)
T d1tf3a1           2 KRYICSFADCGAAYNKNWKLQAHLSKHTGE   31 (31)
T ss_dssp             CCEECSSGGGCCEESSHHHHHHHHHHHHCC
T ss_pred             CceEeeCCCcchhhccchhhhHHhhhhcCC
Confidence            346663  4777777777777777777764

>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.27  E-value=0.023  Score=29.76  Aligned_cols=23  Identities=22%  Similarity=0.190  Sum_probs=19.5

Q ss_pred             CccccccCChHHHHHHHHHhcCC
Q psy11588        436 DMCPSAFKLKKHLQQHYKVHLKK  458 (459)
Q Consensus       436 ~~C~~~f~~~~~l~~H~~~H~~~  458 (459)
                      +.=++.|.....|..||++|+||
T Consensus        11 ~R~~~pf~a~YkLv~H~R~HTgE   33 (33)
T d2glia2          11 SRELRPFKAQYMLVVHMRRHTGE   33 (33)
T ss_dssp             TTTTCCCSSHHHHHHHTHHHHCC
T ss_pred             CCCCCcchhHHHHHHHHhhcCCC
Confidence            33356799999999999999986

>d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=92.63  E-value=0.044  Score=27.83  Aligned_cols=21  Identities=33%  Similarity=0.830  Sum_probs=11.0

Q ss_pred             CcccCCCCCcCCChHHHHHHH
Q psy11588        375 NVVCSYCGNTYKNPKSLESHI  395 (459)
Q Consensus       375 ~~~C~~C~~~f~~~~~l~~H~  395 (459)
                      .|.|+.||-.|.+.+.|..|+
T Consensus         8 rf~c~pcgirfss~stleahq   28 (36)
T d1y0jb1           8 RFMCLPCGIAFSSPSTLEAHQ   28 (36)
T ss_dssp             CCBCTTTCCBCSCHHHHHHHT
T ss_pred             ceeccccceeecChhHHHhhh
Confidence            345555555555555555554

>d2ctda2 g.37.1.1 (A:61-90) Zinc finger protein 512, ZNF512 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 512, ZNF512
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.40  E-value=0.048  Score=26.61  Aligned_cols=27  Identities=15%  Similarity=0.498  Sum_probs=22.3

Q ss_pred             cccccchhhccChhHHHHhhhhhcCCC
Q psy11588        182 HSCQKCEESFDNCNNLWSHMFIKHENS  208 (459)
Q Consensus       182 ~~C~~C~~~f~~~~~l~~H~~~~~~~~  208 (459)
                      |.|..||+...+...+..|+...|...
T Consensus         3 ftc~hcgkqlks~~gmkyhvmadhn~~   29 (30)
T d2ctda2           3 FTCHHCGKQLRSLAGMKYHVMANHNSL   29 (30)
T ss_dssp             CCCSSSCCCCSSHHHHHHHHHHHTCCC
T ss_pred             eechhHHHHHhhccCceEEEeecccCC
Confidence            789999999999999999987766543

>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.36  E-value=0.036  Score=28.50  Aligned_cols=26  Identities=23%  Similarity=0.382  Sum_probs=21.5

Q ss_pred             CcccccchhhccChhHHHHhhhhhcC
Q psy11588        181 CHSCQKCEESFDNCNNLWSHMFIKHE  206 (459)
Q Consensus       181 ~~~C~~C~~~f~~~~~l~~H~~~~~~  206 (459)
                      .|.|..|+++|..+..+.+|...-.+
T Consensus         4 afvcskcgktftrrntm~rha~nc~g   29 (37)
T d1x6ha1           4 AFVCSKCGKTFTRRNTMARHADNCAG   29 (37)
T ss_dssp             CEECSSSCCEESCHHHHHHHHHHCCC
T ss_pred             eeeecccccchhcchHHHHHhhhcCC
Confidence            38899999999999999998766544

>d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=90.75  E-value=0.077  Score=26.91  Aligned_cols=24  Identities=25%  Similarity=0.447  Sum_probs=20.3

Q ss_pred             CCCcccccchhhccChhHHHHhhh
Q psy11588        179 PKCHSCQKCEESFDNCNNLWSHMF  202 (459)
Q Consensus       179 ~~~~~C~~C~~~f~~~~~l~~H~~  202 (459)
                      |..|.|+-||..|.+.+.|..|+.
T Consensus         6 parf~c~pcgirfss~stleahqt   29 (36)
T d1y0jb1           6 PARFMCLPCGIAFSSPSTLEAHQA   29 (36)
T ss_dssp             CCCCBCTTTCCBCSCHHHHHHHTT
T ss_pred             ccceeccccceeecChhHHHhhhh
Confidence            334899999999999999999964

>d1iroa_ g.41.5.1 (A:) Rubredoxin {Clostridium pasteurianum [TaxId: 1501]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Rubredoxin
species: Clostridium pasteurianum [TaxId: 1501]

Probab=90.58  E-value=0.11  Score=30.91  Aligned_cols=44  Identities=20%  Similarity=0.419  Sum_probs=26.7

Q ss_pred             Cceeecccchhhccccccchhhhhccccccccccccccchhccc
Q psy11588          1 MVWTCCKCIAKYTSRSHLSLHLLSHSSDADEIKQELSCEQCGCS   44 (459)
Q Consensus         1 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~~~~C~~C~~~   44 (459)
                      +.|.|.+||.+|.-...-..+-..-....++....|.|++|+..
T Consensus         2 ~ky~C~~CgyiYd~~~Gd~~~gi~pGT~F~~LP~dw~CP~C~a~   45 (53)
T d1iroa_           2 KKYTCTVCGYIYNPEDGDPDNGVNPGTDFKDIPDDWVCPLCGVG   45 (53)
T ss_dssp             CCEEETTTCCEECTTTCBGGGTBCTTCCGGGSCTTCBCTTTCCB
T ss_pred             CCeEcCCCCcEECcccCCcccCCCCCCCHHHCCCCCCCcCCCCc
Confidence            35889999999887666554433222222333445677777764

>d2ctda2 g.37.1.1 (A:61-90) Zinc finger protein 512, ZNF512 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 512, ZNF512
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.54  E-value=0.14  Score=24.90  Aligned_cols=19  Identities=32%  Similarity=0.754  Sum_probs=7.8

Q ss_pred             ccccchhccCChHHHHHHH
Q psy11588        406 ICDVCGKEFKMKKRLKEHM  424 (459)
Q Consensus       406 ~C~~C~~~f~~~~~l~~H~  424 (459)
                      .|..||+...+...++.|+
T Consensus         4 tc~hcgkqlks~~gmkyhv   22 (30)
T d2ctda2           4 TCHHCGKQLRSLAGMKYHV   22 (30)
T ss_dssp             CCSSSCCCCSSHHHHHHHH
T ss_pred             echhHHHHHhhccCceEEE
Confidence            3444444444444444443

>d1s24a_ g.41.5.1 (A:) Two-iron rubredoxin {Pseudomonas oleovorans [TaxId: 301]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Two-iron rubredoxin
species: Pseudomonas oleovorans [TaxId: 301]

Probab=90.48  E-value=0.06  Score=32.37  Aligned_cols=44  Identities=18%  Similarity=0.529  Sum_probs=25.4

Q ss_pred             Cceeecccchhhccccccchhhhhccccccccccccccchhccc
Q psy11588          1 MVWTCCKCIAKYTSRSHLSLHLLSHSSDADEIKQELSCEQCGCS   44 (459)
Q Consensus         1 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~~~~C~~C~~~   44 (459)
                      +.|.|.+||.++.-...-..+-..-....++....+.|++|+..
T Consensus         3 kky~C~~CgyiYdp~~Gd~~~gi~pGT~F~~LP~dw~CP~C~a~   46 (56)
T d1s24a_           3 LKWICITCGHIYDEALGDEAEGFTPGTRFEDIPDDWCCPDCGAT   46 (56)
T ss_dssp             CEEEETTTTEEEETTSCCTTTTCCSCCCGGGCCTTCCCSSSCCC
T ss_pred             ccEECCCCCcEECcccCCcccCcCCCCChhhCCCCCCCcCCCCc
Confidence            46889999988876655443322222222223445677777764

>d1brfa_ g.41.5.1 (A:) Rubredoxin {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Rubredoxin
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=90.16  E-value=0.085  Score=31.31  Aligned_cols=43  Identities=21%  Similarity=0.473  Sum_probs=25.3

Q ss_pred             ceeecccchhhccccccchhhhhccccccccccccccchhccc
Q psy11588          2 VWTCCKCIAKYTSRSHLSLHLLSHSSDADEIKQELSCEQCGCS   44 (459)
Q Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~~~~C~~C~~~   44 (459)
                      .|.|.+||.++.-...-...-..-....++....|.|++|+..
T Consensus         2 ky~C~~CgyiYd~~~Gd~~~gi~pGT~f~dLP~dw~CP~C~a~   44 (53)
T d1brfa_           2 KWVCKICGYIYDEDAGDPDNGISPGTKFEELPDDWVCPICGAP   44 (53)
T ss_dssp             EEEETTTCCEEETTTCBGGGTBCTTCCGGGSCTTCBCTTTCCB
T ss_pred             ceECCCCCcEECcccCCcccCCCCCCCHHHCCCCCCCcCCCCc
Confidence            5889999999877655444322222222223445777777764

>d2j7ja1 g.37.1.1 (A:1-28) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=89.90  E-value=0.11  Score=24.66  Aligned_cols=20  Identities=35%  Similarity=0.494  Sum_probs=13.9

Q ss_pred             ccccccCChHHHHHHHHHhc
Q psy11588        437 MCPSAFKLKKHLQQHYKVHL  456 (459)
Q Consensus       437 ~C~~~f~~~~~l~~H~~~H~  456 (459)
                      -|++.|.....|+.|+-+|+
T Consensus         8 ~c~kafkkhnqlkvhqf~ht   27 (28)
T d2j7ja1           8 NCGKAFKKHNQLKVHQFSHT   27 (28)
T ss_dssp             TCCCEESSHHHHHHHHHHHH
T ss_pred             CchHHHhhccceEEEeeccc
Confidence            47777777777777776664

>d1tf3a1 g.37.1.1 (A:1-40) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=89.06  E-value=0.12  Score=25.65  Aligned_cols=27  Identities=30%  Similarity=0.776  Sum_probs=19.3

Q ss_pred             cccccc--chhccCChHHHHHHHHHhCCC
Q psy11588        404 KSICDV--CGKEFKMKKRLKEHMAVHTTD  430 (459)
Q Consensus       404 ~~~C~~--C~~~f~~~~~l~~H~~~H~~~  430 (459)
                      .|.|..  |+..|.....|..|+-.|+||
T Consensus         3 ~~iCsf~dC~A~ynk~wkL~AHLckHTGe   31 (31)
T d1tf3a1           3 RYICSFADCGAAYNKNWKLQAHLSKHTGE   31 (31)
T ss_dssp             CEECSSGGGCCEESSHHHHHHHHHHHHCC
T ss_pred             ceEeeCCCcchhhccchhhhHHhhhhcCC
Confidence            455643  777788778888887777764

>d2dsxa1 g.41.5.1 (A:1-52) Rubredoxin {Desulfovibrio gigas [TaxId: 879]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Rubredoxin
species: Desulfovibrio gigas [TaxId: 879]

Probab=88.96  E-value=0.14  Score=30.23  Aligned_cols=43  Identities=16%  Similarity=0.469  Sum_probs=24.1

Q ss_pred             ceeecccchhhccccccchhhhhccccccccccccccchhccc
Q psy11588          2 VWTCCKCIAKYTSRSHLSLHLLSHSSDADEIKQELSCEQCGCS   44 (459)
Q Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~~~~C~~C~~~   44 (459)
                      .|.|..||.++.-...-..+-..-....++....+.|++|+..
T Consensus         3 ~y~C~~CgyiYdp~~Gd~~~gi~pGT~F~~LP~~w~CP~C~a~   45 (52)
T d2dsxa1           3 IYVCTVCGYEYDPAKGDPDSGIKPGTKFEDLPDDWACPVCGAS   45 (52)
T ss_dssp             CEEETTTCCEECTTTCBGGGTBCTTCCGGGSCTTCBCTTTCCB
T ss_pred             eEEeCCCCeEECcccCCcccCCCCCCCHHHCCCCCCCcCCCCc
Confidence            5888888888876655444332222222223345667776653

>d1vd4a_ g.41.3.1 (A:) Transcription initiation factor TFIIE-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: Transcription initiation factor TFIIE-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.50  E-value=0.066  Score=32.98  Aligned_cols=36  Identities=22%  Similarity=0.493  Sum_probs=19.7

Q ss_pred             CCccccccchhccCChHHHHHHHHHhCCCCCcccCcccc
Q psy11588        402 RQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMCPS  440 (459)
Q Consensus       402 ~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~~C~~  440 (459)
                      ...|.|+.|+++|....++.-   .-.....|.|.+|+-
T Consensus        12 ~~~y~Cp~C~~~ys~Lda~~L---~d~~~~~F~C~~C~~   47 (62)
T d1vd4a_          12 RASFKCPVCSSTFTDLEANQL---FDPMTGTFRCTFCHT   47 (62)
T ss_dssp             SSEEECSSSCCEEEHHHHHHH---EETTTTEEBCSSSCC
T ss_pred             CCceECCCCCCCcchhhHHHh---cCcCCCeEEecCCCC
Confidence            345667777766655444332   333344566766664

>d2drpa1 g.37.1.1 (A:103-139) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=88.29  E-value=0.18  Score=25.93  Aligned_cols=25  Identities=16%  Similarity=0.635  Sum_probs=15.0

Q ss_pred             CCCcccCccccccCChHHHHHHHHH
Q psy11588        430 DRPFVCDMCPSAFKLKKHLQQHYKV  454 (459)
Q Consensus       430 ~~~~~C~~C~~~f~~~~~l~~H~~~  454 (459)
                      +..|+|.+|.+.++--+++-+|..+
T Consensus         6 ~~~yRC~~C~r~YTHISNFCRHyvt   30 (37)
T d2drpa1           6 EHTYRCKVCSRVYTHISNFCRHYVT   30 (37)
T ss_dssp             TTEEECTTTCCEESSHHHHHHHHHH
T ss_pred             CcEEEeehhhHHHHHHHHHHHHHHh
Confidence            3456666666666666666666543

>d1x6fa1 g.37.1.1 (A:8-82) Zinc finger protein 462, ZNF462 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 462, ZNF462
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.89  E-value=0.047  Score=33.06  Aligned_cols=27  Identities=26%  Similarity=0.616  Sum_probs=17.5

Q ss_pred             CccccchhhHhhhhHHHHHHHHhhhcc
Q psy11588         55 DVYHCADCEQVFLDKFVLELHLKIEHK   81 (459)
Q Consensus        55 ~~~~C~~C~~~f~~~~~L~~H~~~h~~   81 (459)
                      ..|+|..|+..|.+..+|..|+..|..
T Consensus        17 ~~yQC~HCd~K~~s~~el~~hl~~hne   43 (75)
T d1x6fa1          17 STYQCKHCDSKLQSTAELTSHLNIHNE   43 (75)
T ss_dssp             SCEECSSSCCEESSHHHHHHHHHHHHH
T ss_pred             ceeeechhHHHHhhHHHHHHHHHhccH
Confidence            356666666666666666666666643

>d1ubdc1 g.37.1.1 (C:295-322) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.84  E-value=0.14  Score=24.67  Aligned_cols=18  Identities=22%  Similarity=0.652  Sum_probs=10.7

Q ss_pred             cccccCChHHHHHHHHHh
Q psy11588        438 CPSAFKLKKHLQQHYKVH  455 (459)
Q Consensus       438 C~~~f~~~~~l~~H~~~H  455 (459)
                      |++.|...+.+++|+-+|
T Consensus         9 C~K~Frd~saMRKHlhtH   26 (28)
T d1ubdc1           9 CTKMFRDNSAMRKHLHTH   26 (28)
T ss_dssp             CCCEESSHHHHHHHHGGG
T ss_pred             HHHHhhchHHHHHHhhcc
Confidence            556666666666665554

>d1ubdc1 g.37.1.1 (C:295-322) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.81  E-value=0.13  Score=24.83  Aligned_cols=19  Identities=26%  Similarity=0.670  Sum_probs=15.0

Q ss_pred             chhccCChHHHHHHHHHhC
Q psy11588        410 CGKEFKMKKRLKEHMAVHT  428 (459)
Q Consensus       410 C~~~f~~~~~l~~H~~~H~  428 (459)
                      |++.|...++++.|+.+|.
T Consensus         9 C~K~Frd~saMRKHlhtHG   27 (28)
T d1ubdc1           9 CTKMFRDNSAMRKHLHTHG   27 (28)
T ss_dssp             CCCEESSHHHHHHHHGGGS
T ss_pred             HHHHhhchHHHHHHhhccC
Confidence            7888888888888887763

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.88  E-value=0.072  Score=33.45  Aligned_cols=21  Identities=24%  Similarity=0.567  Sum_probs=11.8

Q ss_pred             cccCccccccCChHHHHHHHH
Q psy11588        433 FVCDMCPSAFKLKKHLQQHYK  453 (459)
Q Consensus       433 ~~C~~C~~~f~~~~~l~~H~~  453 (459)
                      |-|..|++.|.+...|..|++
T Consensus        16 fYCv~C~K~F~se~~l~~H~k   36 (67)
T d1zr9a1          16 HRCLACARYFIDSTNLKTHFR   36 (67)
T ss_dssp             SEETTTTEECSSHHHHHHHTT
T ss_pred             EecccccCccCCHHHHHHHHc
Confidence            555555555555555555543

>d6rxna_ g.41.5.1 (A:) Rubredoxin {Desulfovibrio desulfuricans, strain 27774 [TaxId: 876]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Rubredoxin
species: Desulfovibrio desulfuricans, strain 27774 [TaxId: 876]

Probab=86.17  E-value=0.21  Score=28.41  Aligned_cols=36  Identities=25%  Similarity=0.598  Sum_probs=20.3

Q ss_pred             ceeecccchhhccccccchhhhhccccccccccccccchhccc
Q psy11588          2 VWTCCKCIAKYTSRSHLSLHLLSHSSDADEIKQELSCEQCGCS   44 (459)
Q Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~~~~C~~C~~~   44 (459)
                      .|.|.+||.++.-...=       ....++....|.|++|+..
T Consensus         3 ~y~C~~CgyiYd~~~Gd-------gt~Fe~LP~dw~CP~C~a~   38 (45)
T d6rxna_           3 KYVCNVCGYEYDPAEHD-------NVPFDQLPDDWCCPVCGVS   38 (45)
T ss_dssp             CEEETTTCCEECGGGGT-------TCCGGGSCTTCBCTTTCCB
T ss_pred             CeEeCCCCeEECcccCC-------CCCHHHCCCCCCCcCCCCc
Confidence            58888888888653320       1112222345677777654

>d1yuja_ g.37.1.1 (A:) GAGA factor {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GAGA factor
species: Drosophila melanogaster [TaxId: 7227]

Probab=86.02  E-value=0.35  Score=26.94  Aligned_cols=20  Identities=20%  Similarity=0.688  Sum_probs=7.7

Q ss_pred             cccccchhccCChHHHHHHH
Q psy11588        405 SICDVCGKEFKMKKRLKEHM  424 (459)
Q Consensus       405 ~~C~~C~~~f~~~~~l~~H~  424 (459)
                      -.|++|+.......+|.+|+
T Consensus        25 atcpic~avirqsrnlrrhl   44 (54)
T d1yuja_          25 ATCPICYAVIRQSRNLRRHL   44 (54)
T ss_dssp             EECTTTCCEESSHHHHHHHH
T ss_pred             CCCchHHHHHHHHHHHHHHH
Confidence            33333333333333333333

>d1x6fa1 g.37.1.1 (A:8-82) Zinc finger protein 462, ZNF462 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 462, ZNF462
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.33  E-value=0.22  Score=30.08  Aligned_cols=27  Identities=19%  Similarity=0.543  Sum_probs=17.6

Q ss_pred             CccccccchhccCChHHHHHHHHHhCC
Q psy11588        403 QKSICDVCGKEFKMKKRLKEHMAVHTT  429 (459)
Q Consensus       403 ~~~~C~~C~~~f~~~~~l~~H~~~H~~  429 (459)
                      ..|+|..|.-.|.+...|..|+..|..
T Consensus        17 ~~yQC~HCd~K~~s~~el~~hl~~hne   43 (75)
T d1x6fa1          17 STYQCKHCDSKLQSTAELTSHLNIHNE   43 (75)
T ss_dssp             SCEECSSSCCEESSHHHHHHHHHHHHH
T ss_pred             ceeeechhHHHHhhHHHHHHHHHhccH
Confidence            346677776667666667666666643

>d1yuja_ g.37.1.1 (A:) GAGA factor {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GAGA factor
species: Drosophila melanogaster [TaxId: 7227]

Probab=84.98  E-value=0.37  Score=26.83  Aligned_cols=27  Identities=37%  Similarity=0.610  Sum_probs=16.5

Q ss_pred             CCCccccccccccCCHHHHHHHHHHHc
Q psy11588        289 EKDHCCHICKKVFLRYRNLVCHIKAVH  315 (459)
Q Consensus       289 ~~~~~C~~C~~~f~~~~~l~~H~~~~h  315 (459)
                      +.|-.|++|+.......+|++|+...|
T Consensus        22 ~qpatcpic~avirqsrnlrrhlel~h   48 (54)
T d1yuja_          22 EQPATCPICYAVIRQSRNLRRHLELRH   48 (54)
T ss_dssp             SCCEECTTTCCEESSHHHHHHHHHHHT
T ss_pred             cCCCCCchHHHHHHHHHHHHHHHHHHh
Confidence            345566666666666666666665444

>d1vd4a_ g.41.3.1 (A:) Transcription initiation factor TFIIE-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: Transcription initiation factor TFIIE-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.43  E-value=0.069  Score=32.91  Aligned_cols=36  Identities=22%  Similarity=0.546  Sum_probs=20.3

Q ss_pred             CccccchhhHhhhhHHHHHHHHhhhccCCCCCCCceeecccCCcc
Q psy11588         55 DVYHCADCEQVFLDKFVLELHLKIEHKDNMFPKSHWFVCKMCGHR   99 (459)
Q Consensus        55 ~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~~C~~C~~~   99 (459)
                      ..|.|+.|+++|+....++.   .--...      .|.|..|+-.
T Consensus        13 ~~y~Cp~C~~~ys~Lda~~L---~d~~~~------~F~C~~C~~e   48 (62)
T d1vd4a_          13 ASFKCPVCSSTFTDLEANQL---FDPMTG------TFRCTFCHTE   48 (62)
T ss_dssp             SEEECSSSCCEEEHHHHHHH---EETTTT------EEBCSSSCCB
T ss_pred             CceECCCCCCCcchhhHHHh---cCcCCC------eEEecCCCCE
Confidence            45777777777765554443   111111      5777777754

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.95  E-value=0.15  Score=32.01  Aligned_cols=27  Identities=22%  Similarity=0.607  Sum_probs=23.5

Q ss_pred             CCCceeecccCCcceeeehhHHhhhhhh
Q psy11588         86 PKSHWFVCKMCGHRLFMRLSDLRRHMQD  113 (459)
Q Consensus        86 ~~~~~~~C~~C~~~~f~~~~~l~~H~~~  113 (459)
                      |+...|.|..|++. |.+...|..|+++
T Consensus        11 pG~gqfYCv~C~K~-F~se~~l~~H~ks   37 (67)
T d1zr9a1          11 PGGGLHRCLACARY-FIDSTNLKTHFRS   37 (67)
T ss_dssp             GGGGCSEETTTTEE-CSSHHHHHHHTTC
T ss_pred             CCCCEEecccccCc-cCCHHHHHHHHcc
Confidence            45567999999988 9999999999976

>d1dx8a_ g.41.5.1 (A:) Rubredoxin {Guillardia theta [TaxId: 55529]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Rubredoxin
species: Guillardia theta [TaxId: 55529]

Probab=82.91  E-value=0.31  Score=30.69  Aligned_cols=43  Identities=12%  Similarity=0.315  Sum_probs=22.0

Q ss_pred             ceeecccchhhccccccchhhhhccccccccccccccchhccc
Q psy11588          2 VWTCCKCIAKYTSRSHLSLHLLSHSSDADEIKQELSCEQCGCS   44 (459)
Q Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~~~~C~~C~~~   44 (459)
                      .|.|.+|+.++.-...-..+-.--....++....|.|+.|+..
T Consensus         7 ky~C~~CgyiYDp~~GD~~~gI~pGT~F~dLP~dW~CP~Cga~   49 (70)
T d1dx8a_           7 KYECEACGYIYEPEKGDKFAGIPPGTPFVDLSDSFMCPACRSP   49 (70)
T ss_dssp             CEEETTTCCEECTTTCCTTTTCCSSCCGGGSCTTCBCTTTCCB
T ss_pred             eEEcCCCCeEECcccCCcccCCCCCCChHHCCCCCCCcCCCCc
Confidence            4778888877765544333222111122222345667777754

>d2drpa1 g.37.1.1 (A:103-139) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=82.78  E-value=0.35  Score=24.82  Aligned_cols=25  Identities=24%  Similarity=0.598  Sum_probs=14.1

Q ss_pred             CccccccccccCCHHHHHHHHHHHc
Q psy11588        291 DHCCHICKKVFLRYRNLVCHIKAVH  315 (459)
Q Consensus       291 ~~~C~~C~~~f~~~~~l~~H~~~~h  315 (459)
                      .|.|.+|.+++...+++-+|....|
T Consensus         8 ~yRC~~C~r~YTHISNFCRHyvtSH   32 (37)
T d2drpa1           8 TYRCKVCSRVYTHISNFCRHYVTSH   32 (37)
T ss_dssp             EEECTTTCCEESSHHHHHHHHHHHS
T ss_pred             EEEeehhhHHHHHHHHHHHHHHhhc
Confidence            4555566666655555555555444

>d2dlka1 g.37.1.1 (A:8-37) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.54  E-value=0.59  Score=22.57  Aligned_cols=21  Identities=33%  Similarity=0.743  Sum_probs=14.0

Q ss_pred             CCCCCcCCChHHHHHHHHhhc
Q psy11588        379 SYCGNTYKNPKSLESHIRYAH  399 (459)
Q Consensus       379 ~~C~~~f~~~~~l~~H~~~~H  399 (459)
                      +-|++.|++..-|.-|.+..|
T Consensus         6 ~gc~kifsnrqylnhh~kyqh   26 (30)
T d2dlka1           6 PGCGRIFSNRQYLNHHKKYQH   26 (30)
T ss_dssp             TTTCCEESSHHHHHHHHHHGG
T ss_pred             CCchhhhccHHHHHhHHHHHH
Confidence            347777777777777766554

>d1tf3a3 g.37.1.1 (A:71-101) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=80.88  E-value=0.97  Score=21.85  Aligned_cols=23  Identities=30%  Similarity=0.759  Sum_probs=14.6

Q ss_pred             CcccC--ccccccCChHHHHHHHHH
Q psy11588        432 PFVCD--MCPSAFKLKKHLQQHYKV  454 (459)
Q Consensus       432 ~~~C~--~C~~~f~~~~~l~~H~~~  454 (459)
                      .|.|.  .|+-.|+++.++.+|...
T Consensus         2 nf~cdsd~cdl~fttkanmkkhfnr   26 (31)
T d1tf3a3           2 NFTCDSDGCDLRFTTKANMKKHFNR   26 (31)
T ss_dssp             CEECSSSSCCCEESSHHHHHHHHHH
T ss_pred             CccccCCCcceEEeehHHHHHHHhh
Confidence            35553  477777777777777643