Psyllid ID: psy11597

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------
GIVLGQGLESSSHKYGVFQNTCVSYELVLSDASLVECSEEEDRDLFHAIPWSYGTLGFLTAVEIKIIPVKKVRARLGCEKGFPVIYDKEEDRDLFHAIPWSYGTLGFLTAVEIQIIPVKNIRILHHLHVPILDYYHRFSTSLFWEIQDIVPFGNHPLFRYLLGWLMPPKVALLKLTQTQTIKNLYDKHHVVQDYLVPIEELRSCVHYFHDNIQIYPLWICPFLLKDLPGLVHPAKAQDGMYLDLGLYGEPKAKDYHSKNTITALESYLGKIRGFQMLGAGVYQSYSEFRQNYDHSLYDRVRARLGCEKGFPVIYDKE
ccEEcccccccccccccccccEEEEEEEEccccEEEcccccccccccccccccccEEEEEEEEEEEEEccEEEEEEEEEccccccccccccccccccccccccEEEEEEEEccccccccccccEEEEccccccccccccccHHHHHHHccccccccHHHHHcccccccccEEEEEcccccccccccccccEEEEcccHHcHHHHHHHHHHHcccccccccccccccccccccccccccccEEEEEEEcccccccccHHHHHHHHHHHHHHccccccccccccccHHHHHHHccccHHHHHHHHcccccccccccccc
ccEEEccEccccccccccHHHEEEEEEEEcccEEEEEccccccHHHHccccccccHHHEEEEEEEEEEccccEEEEccHHHHHHHHcccccccEEEEEEEccccEEEEEcEEEcccccccccccccccccHHHHHHccccccEHEHHHHccccccHHHHHHHHHHccccHHHHHHcHHHHHccccccccEEEEEEccHHHHHHHHHHHHHHccccEEEEEcccccccccccccccccccEEEEEEEEcccccccccHHHHHHHHHHHHHHcccccEEEEcccccHHHHHHHHccHHHHHHHHHcccccccccHHccc
givlgqglessshkygvFQNTCVSYELVLsdaslvecseeedrdlfhaipwsygtlgFLTAVEIKIIPVKKVRarlgcekgfpviydkeedrdlfhaipwsygtlgfLTAVEIQiipvknirilhhLHVPILDYYHRfstslfweiqdivpfgnhplfryllgwlmppKVALLKLTQTQTIKNLYDKHHVVQDYLVPIEELRSCVHYFhdniqiyplwicpfllkdlpglvhpakaqdgmyldlglygepkakdyhsknTITALESYLGKIRGFQMLGAGVYQSYSEFRQNYDHSLYDRVRARlgcekgfpviydke
givlgqglessshkyGVFQNTCVSYELVLSDASLVECSEEEDRDLFHAIPWSYGTLGFLTAVEIKIIPVKkvrarlgceKGFPVIYDKEEDRDLFHAIPWSYGTLGFLTAVEIQIIPVKNIRILHHLHVPILDYYHRFSTSLFWEIQDIVPFGNHPLFRYLLGWLMPPKVALLKLTQTQTIKNLYDKHHVVQDYLVPIEELRSCVHYFHDNIQIYPLWICPFLLKDLPGLVHPAKAQDGMYLDLGLYGEPKAKDYHSKNTITALESYLGKIRGFQMLGAGVYQSYSEFRQNYDHSLYDRVRARlgcekgfpviydke
GIVLGQGLESSSHKYGVFQNTCVSYELVLSDASLVECSEEEDRDLFHAIPWSYGTLGFLTAVEIKIIPVKKVRARLGCEKGFPVIYDKEEDRDLFHAIPWSYGTLGFLTAVEIQIIPVKNIRILHHLHVPILDYYHRFSTSLFWEIQDIVPFGNHPLFRYLLGWLMPPKVALLKLTQTQTIKNLYDKHHVVQDYLVPIEELRSCVHYFHDNIQIYPLWICPFLLKDLPGLVHPAKAQDGMYLDLGLYGEPKAKDYHSKNTITALESYLGKIRGFQMLGAGVYQSYSEFRQNYDHSLYDRVRARLGCEKGFPVIYDKE
*************KYGVFQNTCVSYELVLSDASLVECSEEEDRDLFHAIPWSYGTLGFLTAVEIKIIPVKKVRARLGCEKGFPVIYDKEEDRDLFHAIPWSYGTLGFLTAVEIQIIPVKNIRILHHLHVPILDYYHRFSTSLFWEIQDIVPFGNHPLFRYLLGWLMPPKVALLKLTQTQTIKNLYDKHHVVQDYLVPIEELRSCVHYFHDNIQIYPLWICPFLLKDLPGLVHPAKAQDGMYLDLGLYGEPKAKDYHSKNTITALESYLGKIRGFQMLGAGVYQSYSEFRQNYDHSLYDRVRARLGCEKGFPVIY***
GIVLGQGLESSSHKYGVFQNTCVSYELVLSDASLVECSEEEDRDLFHAIPWSYGTLGFLTAVEIKIIPVKKVRARLGCEKGFPVIYDKEEDRDLFHAIPWSYGTLGFLTAVEIQIIPVKNIRILHHLHVPILDYYHRFSTSLFWEIQDIVPFGNHPLFRYLLGWLMPPKVALLKLTQTQTIKNLYDKHHVVQDYLVPIEELRSCVHYFHDNIQIYPLWICPFLLKDLPGLVHPAKAQDGMYLDLGLYGEPKAKDYHSKNTITALESYLGKIRGFQMLGAGVYQSYSEFRQNYDHSLYDRVRARLGCEKGFPVIYDK*
GIVLGQGLESSSHKYGVFQNTCVSYELVLSDASLVECSEEEDRDLFHAIPWSYGTLGFLTAVEIKIIPVKKVRARLGCEKGFPVIYDKEEDRDLFHAIPWSYGTLGFLTAVEIQIIPVKNIRILHHLHVPILDYYHRFSTSLFWEIQDIVPFGNHPLFRYLLGWLMPPKVALLKLTQTQTIKNLYDKHHVVQDYLVPIEELRSCVHYFHDNIQIYPLWICPFLLKDLPGLVHPAKAQDGMYLDLGLYGEPKAKDYHSKNTITALESYLGKIRGFQMLGAGVYQSYSEFRQNYDHSLYDRVRARLGCEKGFPVIYDKE
GIVLGQGLESSSHKYGVFQNTCVSYELVLSDASLVECSEEEDRDLFHAIPWSYGTLGFLTAVEIKIIPVKKVRARLGCEKGFPVIYDKEEDRDLFHAIPWSYGTLGFLTAVEIQIIPVKNIRILHHLHVPILDYYHRFSTSLFWEIQDIVPFGNHPLFRYLLGWLMPPKVALLKLTQTQTIKNLYDKHHVVQDYLVPIEELRSCVHYFHDNIQIYPLWICPFLLKDLPGLVHPAKAQDGMYLDLGLYGEPKAKDYHSKNTITALESYLGKIRGFQMLGAGVYQSYSEFRQNYDHSLYDRVRARLGCEKGFPVIYDKE
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GIVLGQGLESSSHKYGVFQNTCVSYELVLSDASLVECSEEEDRDLFHAIPWSYGTLGFLTAVEIKIIPVKKVRARLGCEKGFPVIYDKEEDRDLFHAIPWSYGTLGFLTAVEIQIIPVKNIRILHHLHVPILDYYHRFSTSLFWEIQDIVPFGNHPLFRYLLGWLMPPKVALLKLTQTQTIKNLYDKHHVVQDYLVPIEELRSCVHYFHDNIQIYPLWICPFLLKDLPGLVHPAKAQDGMYLDLGLYGEPKAKDYHSKNTITALESYLGKIRGFQMLGAGVYQSYSEFRQNYDHSLYDRVRARLGCEKGFPVIYDKE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query317 2.2.26 [Sep-21-2011]
Q60HC5516 Delta(24)-sterol reductas N/A N/A 0.996 0.612 0.433 2e-84
Q15392516 Delta(24)-sterol reductas yes N/A 0.996 0.612 0.433 4e-84
Q5BQE6516 Delta(24)-sterol reductas yes N/A 0.996 0.612 0.433 1e-83
Q8VCH6516 Delta(24)-sterol reductas yes N/A 0.996 0.612 0.427 1e-83
O17397525 Diminuto-like protein OS= yes N/A 0.990 0.598 0.381 4e-67
P93472567 Delta(24)-sterol reductas N/A N/A 0.996 0.557 0.306 5e-45
Q39085561 Delta(24)-sterol reductas yes N/A 0.996 0.563 0.311 8e-43
P58710440 L-gulonolactone oxidase O no N/A 0.214 0.154 0.308 7e-05
P10867440 L-gulonolactone oxidase O no N/A 0.208 0.15 0.303 0.0002
D7UQ40515 Bifunctional solanapyrone N/A N/A 0.192 0.118 0.360 0.0002
>sp|Q60HC5|DHC24_MACFA Delta(24)-sterol reductase OS=Macaca fascicularis GN=DHCR24 PE=2 SV=2 Back     alignment and function desciption
 Score =  312 bits (800), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 149/344 (43%), Positives = 223/344 (64%), Gaps = 28/344 (8%)

Query: 1   GIVLGQGLESSSHKYGVFQNTCVSYELVLSDASLVECSEEEDRDLFHAIPWSYGTLGFLT 60
           G+++G G+ESSSHKYG+FQ+ C +YELVL+D S V C+  E+ DLF+A+PWS GTLGFL 
Sbjct: 166 GLIMGTGIESSSHKYGLFQHICTAYELVLADGSFVRCTPSENSDLFYAVPWSCGTLGFLV 225

Query: 61  AVEIKIIPVKK-VRARLGCEKGFPVIYDK------EEDRDLFHAIPWSYGTLGFLTAV-- 111
           A EI+IIP KK V+ R    +G   I  K       ++      + +S      +T V  
Sbjct: 226 AAEIRIIPAKKYVKLRFEPVQGLEAICAKFTHESQRQENHFVEGLLYSLDEAVIMTGVMT 285

Query: 112 -EIQIIPVKNIR------ILHHL------------HVPILDYYHRFSTSLFWEIQDIVPF 152
            E++   + +I          H+            ++P+  YYHR + S+FWE+QDI+PF
Sbjct: 286 DEVEPSKLNSIGNYYKPWFFKHVENYLKTNREGLEYIPLRHYYHRHTRSIFWELQDIIPF 345

Query: 153 GNHPLFRYLLGWLMPPKVALLKLTQTQTIKNLYDKHHVVQDYLVPIEELRSCVHYFHDNI 212
           GN+P+FRYL GW++PPK++LLKLTQ +T++ LY++HHVVQD LVP++ L+  +H F ++I
Sbjct: 346 GNNPIFRYLFGWMVPPKISLLKLTQGETLRKLYEQHHVVQDMLVPMKCLQQALHTFQNDI 405

Query: 213 QIYPLWICPFLLKDLPGLVHPAKAQDGMYLDLGLYGEPKAKDYHSKNTITALESYLGKIR 272
            +YP+W+CPF+L   PGLVHP   +  +Y+D+G YGEP+ K + +++ +  LE ++  + 
Sbjct: 406 HVYPIWLCPFILPSQPGLVHPKGNEAELYIDIGAYGEPRVKHFEARSCMRQLEKFVRSVH 465

Query: 273 GFQMLGAGVYQSYSEFRQNYDHSLYDRVRARLGCEKGFPVIYDK 316
           GFQML A  Y +  EF + +D SLY ++R +LGC+  FP +YDK
Sbjct: 466 GFQMLYADCYMNREEFWEMFDGSLYHKLREKLGCQDAFPEVYDK 509
Catalyzes the reduction of the delta-24 double bond of sterol intermediates.
Macaca fascicularis (taxid: 9541)
EC: 1EC: .EC: 3EC: .EC: 1EC: .EC: 7EC: 2
>sp|Q15392|DHC24_HUMAN Delta(24)-sterol reductase OS=Homo sapiens GN=DHCR24 PE=1 SV=2 Back     alignment and function description
>sp|Q5BQE6|DHC24_RAT Delta(24)-sterol reductase OS=Rattus norvegicus GN=Dhcr24 PE=2 SV=2 Back     alignment and function description
>sp|Q8VCH6|DHC24_MOUSE Delta(24)-sterol reductase OS=Mus musculus GN=Dhcr24 PE=2 SV=1 Back     alignment and function description
>sp|O17397|DIML_CAEEL Diminuto-like protein OS=Caenorhabditis elegans GN=F52H2.6 PE=3 SV=1 Back     alignment and function description
>sp|P93472|DIM_PEA Delta(24)-sterol reductase OS=Pisum sativum GN=DIM PE=1 SV=1 Back     alignment and function description
>sp|Q39085|DIM_ARATH Delta(24)-sterol reductase OS=Arabidopsis thaliana GN=DIM PE=1 SV=2 Back     alignment and function description
>sp|P58710|GGLO_MOUSE L-gulonolactone oxidase OS=Mus musculus GN=Gulo PE=1 SV=3 Back     alignment and function description
>sp|P10867|GGLO_RAT L-gulonolactone oxidase OS=Rattus norvegicus GN=Gulo PE=1 SV=3 Back     alignment and function description
>sp|D7UQ40|SOL5_ALTSO Bifunctional solanapyrone synthase OS=Alternaria solani GN=sol5 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query317
291242187 517 PREDICTED: 24-dehydrocholesterol reducta 0.987 0.605 0.462 8e-88
390343862 524 PREDICTED: delta(24)-sterol reductase [S 0.996 0.603 0.459 2e-86
345479476 498 PREDICTED: delta(24)-sterol reductase-li 0.987 0.628 0.454 2e-85
410967350 427 PREDICTED: delta(24)-sterol reductase [F 0.996 0.740 0.459 7e-85
348556616 516 PREDICTED: delta(24)-sterol reductase-li 0.996 0.612 0.453 8e-85
444727499 552 Delta(24)-sterol reductase [Tupaia chine 0.996 0.572 0.450 1e-84
345800451 427 PREDICTED: delta(24)-sterol reductase is 0.996 0.740 0.450 1e-84
301760009 516 PREDICTED: 24-dehydrocholesterol reducta 0.996 0.612 0.450 2e-84
405976240 467 24-dehydrocholesterol reductase [Crassos 0.981 0.665 0.475 2e-84
332374782 502 unknown [Dendroctonus ponderosae] 0.993 0.627 0.437 2e-84
>gi|291242187|ref|XP_002740991.1| PREDICTED: 24-dehydrocholesterol reductase-like [Saccoglossus kowalevskii] Back     alignment and taxonomy information
 Score =  329 bits (844), Expect = 8e-88,   Method: Compositional matrix adjust.
 Identities = 160/346 (46%), Positives = 228/346 (65%), Gaps = 33/346 (9%)

Query: 1   GIVLGQGLESSSHKYGVFQNTCVSYELVLSDASLVECSEEEDRDLFHAIPWSYGTLGFLT 60
           G+++G G+E+SSHK+G+FQ+TC+SYELVL+D SLV+CS++ED DLF+A+PWSYGTLGFL 
Sbjct: 168 GLIMGVGIETSSHKHGLFQHTCLSYELVLADGSLVKCSKDEDPDLFYAVPWSYGTLGFLV 227

Query: 61  AVEIKIIPVKK--------VRARLGCEKGFPVIYDKE-EDRDLFHAIPWSYGTLGFLTAV 111
           A EIKIIP KK        V+      K F    DK   + +   A+ +S      +TA 
Sbjct: 228 AAEIKIIPAKKFVKIEYFPVKTTENISKVFK---DKVFGENEFVEALVYSDHEAVIMTAN 284

Query: 112 EIQIIPVKNIRILHHL---------------------HVPILDYYHRFSTSLFWEIQDIV 150
           + +    + +  + +                      ++P+  YYHR + S+FWE+QDI+
Sbjct: 285 QTENAEAEKVNAIGNYWKPWFFKHVESYLKKGRGGVEYIPLRHYYHRHTRSIFWELQDII 344

Query: 151 PFGNHPLFRYLLGWLMPPKVALLKLTQTQTIKNLYDKHHVVQDYLVPIEELRSCVHYFHD 210
           PFGN+P+FRYL GW++PPK++LLKLTQ +TI+ LY++HHV+QD LVP+E L S +  F  
Sbjct: 345 PFGNNPIFRYLCGWMVPPKISLLKLTQGETIRRLYEQHHVIQDMLVPLETLDSSLKCFDK 404

Query: 211 NIQIYPLWICPFLLKDLPGLVHPAKAQDGMYLDLGLYGEPKAKDYHSKNTITALESYLGK 270
            +++YPLW+CP LL  +PG+VHP   QD M++D+G YGEPK   + +++T+  LE Y+  
Sbjct: 405 ELKLYPLWVCPMLLPSIPGMVHPKSDQDEMFVDIGAYGEPKRDGFKARDTVRRLEKYVRS 464

Query: 271 IRGFQMLGAGVYQSYSEFRQNYDHSLYDRVRARLGCEKGFPVIYDK 316
           + GFQML A  Y +  EFR  +DHSLYDR+R +L C K FP +YDK
Sbjct: 465 VDGFQMLYADCYMTKEEFRFMFDHSLYDRLRTKLNCCKAFPEVYDK 510

Source: Saccoglossus kowalevskii

Species: Saccoglossus kowalevskii

Genus: Saccoglossus

Family: Harrimaniidae

Order:

Class: Enteropneusta

Phylum: Hemichordata

Superkingdom: Eukaryota
>gi|390343862|ref|XP_792094.3| PREDICTED: delta(24)-sterol reductase [Strongylocentrotus purpuratus] Back     alignment and taxonomy information
>gi|345479476|ref|XP_001607022.2| PREDICTED: delta(24)-sterol reductase-like [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|410967350|ref|XP_003990183.1| PREDICTED: delta(24)-sterol reductase [Felis catus] Back     alignment and taxonomy information
>gi|348556616|ref|XP_003464117.1| PREDICTED: delta(24)-sterol reductase-like [Cavia porcellus] Back     alignment and taxonomy information
>gi|444727499|gb|ELW67987.1| Delta(24)-sterol reductase [Tupaia chinensis] Back     alignment and taxonomy information
>gi|345800451|ref|XP_546693.3| PREDICTED: delta(24)-sterol reductase isoform 1 [Canis lupus familiaris] Back     alignment and taxonomy information
>gi|301760009|ref|XP_002915799.1| PREDICTED: 24-dehydrocholesterol reductase-like [Ailuropoda melanoleuca] gi|281353588|gb|EFB29172.1| hypothetical protein PANDA_003830 [Ailuropoda melanoleuca] Back     alignment and taxonomy information
>gi|405976240|gb|EKC40753.1| 24-dehydrocholesterol reductase [Crassostrea gigas] Back     alignment and taxonomy information
>gi|332374782|gb|AEE62532.1| unknown [Dendroctonus ponderosae] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query317
UNIPROTKB|F1PXA2516 DHCR24 "Uncharacterized protei 0.596 0.366 0.518 9.2e-86
ZFIN|ZDB-GENE-041212-73516 dhcr24 "24-dehydrocholesterol 0.596 0.366 0.502 4.5e-84
UNIPROTKB|A6QR14516 DHCR24 "Uncharacterized protei 0.596 0.366 0.502 5.7e-84
UNIPROTKB|I3LM80516 DHCR24 "Uncharacterized protei 0.596 0.366 0.502 1.2e-83
UNIPROTKB|B7Z817475 DHCR24 "cDNA FLJ53870, highly 0.596 0.397 0.492 3.1e-83
UNIPROTKB|Q15392516 DHCR24 "Delta(24)-sterol reduc 0.596 0.366 0.492 3.1e-83
UNIPROTKB|Q60HC5516 DHCR24 "Delta(24)-sterol reduc 0.596 0.366 0.492 4e-83
RGD|1306529516 Dhcr24 "24-dehydrocholesterol 0.596 0.366 0.492 4e-83
MGI|MGI:1922004516 Dhcr24 "24-dehydrocholesterol 0.596 0.366 0.486 6.5e-83
UNIPROTKB|Q5ZIF2516 DHCR24 "Uncharacterized protei 0.596 0.366 0.481 2.5e-81
UNIPROTKB|F1PXA2 DHCR24 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
 Score = 603 (217.3 bits), Expect = 9.2e-86, Sum P(2) = 9.2e-86
 Identities = 98/189 (51%), Positives = 142/189 (75%)

Query:   128 HVPILDYYHRFSTSLFWEIQDIVPFGNHPLFRYLLGWLMPPKVALLKLTQTQTIKNLYDK 187
             ++P+  YYHR + S+FWE+QDI+PFGN+P+FRYL GW++PPK++LLKLTQ +T++ LY++
Sbjct:   321 YIPLRHYYHRHTRSIFWELQDIIPFGNNPVFRYLFGWMVPPKISLLKLTQGETLRKLYEQ 380

Query:   188 HHVVQDYLVPIEELRSCVHYFHDNIQIYPLWICPFLLKDLPGLVHPAKAQDGMYLDLGLY 247
             HHVVQD LVP++ L   VH FH++I +YP+W+CPF+L   PGLVHP   +  +Y+D+G Y
Sbjct:   381 HHVVQDMLVPMKCLSQAVHTFHNDIHVYPIWLCPFILPSQPGLVHPKGDEAELYVDIGAY 440

Query:   248 GEPKAKDYHSKNTITALESYLGKIRGFQMLGAGVYQSYSEFRQNYDHSLYDRVRARLGCE 307
             GEP+ K + +++ +  LE ++  + GFQML A  Y S  EF + +D SLY R+R RLGC+
Sbjct:   441 GEPRVKHFEARSCMRQLEKFVRSVHGFQMLYADCYMSREEFWEMFDGSLYHRLRERLGCQ 500

Query:   308 KGFPVIYDK 316
               FP +YDK
Sbjct:   501 DAFPEVYDK 509
GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA
GO:0008762 "UDP-N-acetylmuramate dehydrogenase activity" evidence=IEA
ZFIN|ZDB-GENE-041212-73 dhcr24 "24-dehydrocholesterol reductase" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|A6QR14 DHCR24 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|I3LM80 DHCR24 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|B7Z817 DHCR24 "cDNA FLJ53870, highly similar to 24-dehydrocholesterol reductase (EC1.3.1.-)" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q15392 DHCR24 "Delta(24)-sterol reductase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q60HC5 DHCR24 "Delta(24)-sterol reductase" [Macaca fascicularis (taxid:9541)] Back     alignment and assigned GO terms
RGD|1306529 Dhcr24 "24-dehydrocholesterol reductase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:1922004 Dhcr24 "24-dehydrocholesterol reductase" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ZIF2 DHCR24 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q15392DHC24_HUMAN1, ., 3, ., 1, ., 7, 20.43310.99680.6124yesN/A
Q5BQE6DHC24_RAT1, ., 3, ., 1, ., 7, 20.43310.99680.6124yesN/A
Q8VCH6DHC24_MOUSE1, ., 3, ., 1, ., 7, 20.42730.99680.6124yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query317
COG0277459 COG0277, GlcD, FAD/FMN-containing dehydrogenases [ 4e-08
TIGR01678438 TIGR01678, FAD_lactone_ox, sugar 1,4-lactone oxida 5e-07
>gnl|CDD|223354 COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion] Back     alignment and domain information 
 Score = 54.1 bits (130), Expect = 4e-08
 Identities = 44/317 (13%), Positives = 91/317 (28%), Gaps = 25/317 (7%)

Query: 1   GIVLGQGLESSSHKYGVFQNTCVSYELVLSDASLVECSEEEDR-----DLFHAIPWSYGT 55
           G +        S +YG+ ++  +   +VL D  ++    +  +     DL      S GT
Sbjct: 133 GNIATNAGGLRSLRYGLTRDNVLGLRVVLPDGEILRLGRKLRKDNAGYDLTALFVGSEGT 192

Query: 56  LGFLTAVEIKIIPVKKVRARLGC------EKGFPVIYDKEEDRDLFHAIPWSYGTLGFLT 109
           LG +T   +K++P+ + +A                +        L   IP +   +    
Sbjct: 193 LGIITEATLKLLPLPETKATAVAGFPSIEAAARLAVAAIALLEAL-GVIPAALEFMDRPI 251

Query: 110 AVEIQIIPVKNIRILHHLHVPILDYYHRFST--SLFWEIQDIVPFGNHPLFRYLLGWLMP 167
                 +    + +     + +       +        + +++          +   L  
Sbjct: 252 KAAEAYLGGGALPLEAPARLLVEVEGSDEAAVDEALEALGELLLEHGLARDLVVAQDLAE 311

Query: 168 PKVALLKLTQTQTIKNLYDKHHVVQDYLVPIEELRSCVHYFHDNIQIYPLWI-CPFLLKD 226
                L                + +D +VP+E L   +      +    L +        
Sbjct: 312 AARLWLARKGALAAAGALGPGVIQEDVVVPLEALPEFLREILALLDKAGLALRVALFGHA 371

Query: 227 LPGLVHPAKAQDGMYLDLGLYGEPKAKDYHSKNTITAL-ESYLGKIRGFQMLGAGVYQSY 285
             G +H       +  D+G   E  A+       I AL     G I G   +G    +  
Sbjct: 372 GDGNLHLN-----ILYDVGDEAEELARAEALNEAIEALAVELGGSISGEHGIGRTKAEFL 426

Query: 286 SEFRQNYDHSLYDRVRA 302
                      +  +RA
Sbjct: 427 ELEPGE----AWALLRA 439

Length = 459
>gnl|CDD|233525 TIGR01678, FAD_lactone_ox, sugar 1,4-lactone oxidases Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 317
KOG1262|consensus543 100.0
TIGR01679419 bact_FAD_ox FAD-linked oxidoreductase. This model 100.0
TIGR01678438 FAD_lactone_ox sugar 1,4-lactone oxidases. This mo 100.0
TIGR01676541 GLDHase galactonolactone dehydrogenase. This model 100.0
TIGR01677557 pln_FAD_oxido plant-specific FAD-dependent oxidore 100.0
PLN02441525 cytokinin dehydrogenase 100.0
PLN02465573 L-galactono-1,4-lactone dehydrogenase 100.0
KOG1231|consensus505 99.9
KOG4730|consensus518 99.88
PF04030259 ALO: D-arabinono-1,4-lactone oxidase ; InterPro: I 99.87
PLN00107257 FAD-dependent oxidoreductase; Provisional 99.79
PLN02805555 D-lactate dehydrogenase [cytochrome] 99.68
COG0277459 GlcD FAD/FMN-containing dehydrogenases [Energy pro 99.66
PRK11230499 glycolate oxidase subunit GlcD; Provisional 99.59
TIGR00387413 glcD glycolate oxidase, subunit GlcD. This protein 99.52
PRK11282352 glcE glycolate oxidase FAD binding subunit; Provis 99.42
PF09265281 Cytokin-bind: Cytokinin dehydrogenase 1, FAD and c 99.27
KOG1232|consensus511 98.48
PRK13905298 murB UDP-N-acetylenolpyruvoylglucosamine reductase 98.41
KOG1233|consensus613 98.18
PRK11183564 D-lactate dehydrogenase; Provisional 97.28
PRK14652302 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 97.02
PRK12436305 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 96.68
PRK13903363 murB UDP-N-acetylenolpyruvoylglucosamine reductase 96.54
PRK13906307 murB UDP-N-acetylenolpyruvoylglucosamine reductase 96.28
PF02913248 FAD-oxidase_C: FAD linked oxidases, C-terminal dom 95.96
PF0803147 BBE: Berberine and berberine like ; InterPro: IPR0 95.62
TIGR00179284 murB UDP-N-acetylenolpyruvoylglucosamine reductase 94.23
PRK14653297 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 93.24
PRK14649295 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 93.08
PRK00046334 murB UDP-N-acetylenolpyruvoylglucosamine reductase 83.75
COG0812291 MurB UDP-N-acetylmuramate dehydrogenase [Cell enve 82.97
PRK14651273 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 82.75
PRK14650302 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 81.51
>KOG1262|consensus Back     alignment and domain information 
Probab=100.00  E-value=4e-59  Score=426.82  Aligned_cols=316  Identities=41%  Similarity=0.843  Sum_probs=283.8

Q ss_pred             CceeccCCCCCCcccCcccccEEEEEEEecCccEEEEcCC-CCcchhhhcccCCCCcEEEEEEEEEEEecccE-EEEE-C
Q psy11597          1 GIVLGQGLESSSHKYGVFQNTCVSYELVLSDASLVECSEE-EDRDLFHAIPWSYGTLGFLTAVEIKIIPVKKV-RARL-G   77 (317)
Q Consensus         1 G~~~~~g~~~~~~~~G~~~~~V~~~~vv~~~G~~~~~s~~-~~~dLf~a~~gg~G~~Gvit~~~l~~~p~~~~-~~~~-~   77 (317)
                      |++.|.|+.++||+||++.+.+++.|||++||++++|.++ +++|||.|+.+|-|++|..+.+||+++|+.++ +++| +
T Consensus       159 GLinG~Gies~ShkyGlfq~~~~aYEvVladGelv~~t~dne~sdLfyaiPWSqGTlgfLVaatiriIkvK~Yvkltyip  238 (543)
T KOG1262|consen  159 GLINGVGIESSSHKYGLFQHICTAYEVVLADGELVRVTPDNEHSDLFYAIPWSQGTLGFLVAATIRIIKVKKYVKLTYIP  238 (543)
T ss_pred             ceeeecccccccchhhhHHhhhheeEEEecCCeEEEecCCcccCceEEEcccccCchheeeeeEEEEEeccceEEEEEEe
Confidence            7889999999999999999999999999999999999885 89999999999999999999999999999999 9999 5


Q ss_pred             CCC--ccc----cc---ccC-CCCCCeEEEEEecCCCc----ceeecc-ccccccccccee---E---------------
Q psy11597         78 CEK--GFP----VI---YDK-EEDRDLFHAIPWSYGTL----GFLTAV-EIQIIPVKNIRI---L---------------  124 (317)
Q Consensus        78 ~~~--~~~----~~---~~~-~~~~~~~~~~~~~~~~~----g~~~~~-~~~~~~~~~~~~---~---------------  124 (317)
                      ...  ++.    +.   .+. .+.+||+++++++++.+    |.++|. +... ..+.|.+   |               
T Consensus       239 ~~~l~e~c~k~~e~~~dsdkntk~~dfvE~liyn~~egviMvG~fad~~dak~-~~kvN~vgwwyKpWFykHvet~lkkg  317 (543)
T KOG1262|consen  239 VHGLDEYCKKITELSGDSDKNTKNADFVEGLIYNKNEGVIMVGNFADKVDAKS-NAKVNDVGWWYKPWFYKHVETFLKKG  317 (543)
T ss_pred             cccHHHHHHHHHhhcccccccccccchhheeeecCCccEEEEEeccCcccccc-ccccccchhhhhhHHHHHHHHHHhcC
Confidence            543  121    11   112 25679999999999988    777772 2221 1244432   1               


Q ss_pred             -EeceeecccchhcccCCceeeeeeecccCCcceehhhccccCCchhhhhcccccccccccccCCCceEEEeechhcHHH
Q psy11597        125 -HHLHVPILDYYHRFSTSLFWEIQDIVPFGNHPLFRYLLGWLMPPKVALLKLTQTQTIKNLYDKHHVVQDYLVPIEELRS  203 (317)
Q Consensus       125 -~~~~~~~~~y~~r~~~~~~w~~~~~~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~qd~~IP~~~~~~  203 (317)
                       .++++|+.+|++|+++++||..+.++|||+|+++|.+++|++||+.++++..+...++++|...|++||+.||+++..+
T Consensus       318 e~~EYIPlr~YyhRHtrsifWe~~~iiPFGn~~~FRyllgWl~PPKia~LKaTt~ealRkly~~~hV~QDmlvPl~kl~e  397 (543)
T KOG1262|consen  318 EGEEYIPLRSYYHRHTRSIFWELEDIIPFGNNPVFRYLLGWLCPPKIAFLKATTGEALRKLYFAKHVFQDMLVPLDKLKE  397 (543)
T ss_pred             CCceeeeHHHHHHhccceeEEeeeeeeecCCcHHHHHHHHhcCCChHHHhhcccHHHHHHHHHHHHHHHHhhccHHHHHH
Confidence             1789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhccCCCeeeeeeeecCCC--CCCCCC-------CCCCCeeEEEeeecCC----CCCCcchhHHHHHHHHHHHh
Q psy11597        204 CVHYFHDNIQIYPLWICPFLLKDLP--GLVHPA-------KAQDGMYLDLGLYGEP----KAKDYHSKNTITALESYLGK  270 (317)
Q Consensus       204 ~l~~i~~~~~~~p~~l~p~k~~~~~--~~L~~p-------~~~~~~~~d~~~y~~~----~~~~~~~~~~~~~le~~v~~  270 (317)
                      +++.+.+++..+|+||||++...+|  |.+++|       ....+||.|+|+|+.|    +.+++...+.+|+||..+++
T Consensus       398 ald~~hke~evYPiwlcP~~l~~qp~~Gq~~~~p~~r~~~~~~~~my~DvGvYg~pg~v~r~e~y~~~~a~RrmEkfvr~  477 (543)
T KOG1262|consen  398 ALDTFHKEFEVYPIWLCPFRLYSQPGQGQLRPPPKSRLVPGTNASMYNDVGVYGTPGQVERREPYNPTHAMRRMEKFVRS  477 (543)
T ss_pred             HHHHHHhhheeeeeeeeeeeccCCCCCceecCCccccCCCCCcceeEEecccccCCccccccCCCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999988  888875       7788999999999988    66778889999999999999


Q ss_pred             cCCeeccccCCCCChHHHHHhCCchHHHHHHHhcCCCCCCCcccccC
Q psy11597        271 IRGFQMLGAGVYQSYSEFRQNYDHSLYDRVRARLGCEKGFPVIYDKE  317 (317)
Q Consensus       271 ~GGr~yl~k~~~~t~~~f~~~Yp~~~f~~~r~~~DP~~~f~~~~~k~  317 (317)
                      .+|.+++|+|++||+++||+||+.+.|.++|.+|.|.+.|+++|||.
T Consensus       478 v~Gfq~~YAd~~m~eeef~eMFd~tLY~~~R~ky~cigaFp~vYdKi  524 (543)
T KOG1262|consen  478 VHGFQMLYADIYMSEEEFWEMFDGTLYNQVRLKYHCIGAFPRVYDKI  524 (543)
T ss_pred             ccCcceeehhhhcCHHHHHHHhhhHHHHHHHHHcCccccchHHHHhh
Confidence            99999999999999999999999999999999999999999999983

>TIGR01679 bact_FAD_ox FAD-linked oxidoreductase Back     alignment and domain information
>TIGR01678 FAD_lactone_ox sugar 1,4-lactone oxidases Back     alignment and domain information
>TIGR01676 GLDHase galactonolactone dehydrogenase Back     alignment and domain information
>TIGR01677 pln_FAD_oxido plant-specific FAD-dependent oxidoreductase Back     alignment and domain information
>PLN02441 cytokinin dehydrogenase Back     alignment and domain information
>PLN02465 L-galactono-1,4-lactone dehydrogenase Back     alignment and domain information
>KOG1231|consensus Back     alignment and domain information
>KOG4730|consensus Back     alignment and domain information
>PF04030 ALO: D-arabinono-1,4-lactone oxidase ; InterPro: IPR007173 This domain is specific to D-arabinono-1,4-lactone oxidase 1 Back     alignment and domain information
>PLN00107 FAD-dependent oxidoreductase; Provisional Back     alignment and domain information
>PLN02805 D-lactate dehydrogenase [cytochrome] Back     alignment and domain information
>COG0277 GlcD FAD/FMN-containing dehydrogenases [Energy production and conversion] Back     alignment and domain information
>PRK11230 glycolate oxidase subunit GlcD; Provisional Back     alignment and domain information
>TIGR00387 glcD glycolate oxidase, subunit GlcD Back     alignment and domain information
>PRK11282 glcE glycolate oxidase FAD binding subunit; Provisional Back     alignment and domain information
>PF09265 Cytokin-bind: Cytokinin dehydrogenase 1, FAD and cytokinin binding; InterPro: IPR015345 This domain adopts an alpha+beta sandwich structure with an antiparallel beta-sheet, in a ferredoxin-like fold Back     alignment and domain information
>KOG1232|consensus Back     alignment and domain information
>PRK13905 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>KOG1233|consensus Back     alignment and domain information
>PRK11183 D-lactate dehydrogenase; Provisional Back     alignment and domain information
>PRK14652 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK12436 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK13903 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK13906 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PF02913 FAD-oxidase_C: FAD linked oxidases, C-terminal domain; InterPro: IPR004113 Some oxygen-dependent oxidoreductases are flavoproteins that contain a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage Back     alignment and domain information
>PF08031 BBE: Berberine and berberine like ; InterPro: IPR012951 This domain is found in the berberine bridge and berberine bridge-like enzymes, which are involved in the biosynthesis of numerous isoquinoline alkaloids Back     alignment and domain information
>TIGR00179 murB UDP-N-acetylenolpyruvoylglucosamine reductase Back     alignment and domain information
>PRK14653 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK14649 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK00046 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>COG0812 MurB UDP-N-acetylmuramate dehydrogenase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PRK14651 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK14650 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query317
1w1o_A534 Cytokinin dehydrogenase 1; flavin, oxidoreductase, 2e-16
2exr_A524 Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin 6e-11
2i0k_A561 Oxidoreductase; MIX alpha beta, covalent FAD, flav 6e-08
2vfr_A422 Xylitol oxidase, alditol oxidase; FAD, sugar, poly 2e-07
4feh_A481 Oxidoreductase DPRE1; alpha+beta, decaprenylphosph 6e-07
2bvf_A459 6-hydroxy-D-nicotine oxidase; autoflavinylation, e 2e-06
3js8_A540 Cholesterol oxidase; cholsterol, organic solvent s 3e-05
1zr6_A503 Glucooligosaccharide oxidase; alpha + beta, flavoe 2e-04
3rja_A473 Carbohydrate oxidase; protein-substrate analogue c 3e-04
>1w1o_A Cytokinin dehydrogenase 1; flavin, oxidoreductase, flavoprotein, FAD; HET: NAG FAD; 1.7A {Zea mays} SCOP: d.58.32.4 d.145.1.1 PDB: 1w1q_A* 1w1r_A* 1w1s_A* 3dq0_A* 2qkn_A* 3c0p_A* 3bw7_A* 2qpm_A* 3kjm_A* Length = 534 Back     alignment and structure
 Score = 78.9 bits (194), Expect = 2e-16
 Identities = 51/350 (14%), Positives = 107/350 (30%), Gaps = 57/350 (16%)

Query: 1   GIVLGQGLESSSHKYGVFQNTCVSYELVLSDASLVECSEEEDRDLFHAIPWSYGTLGFLT 60
           G +   G+   + ++G   +  +  +++     +V CS++ + DLF A+    G  G +T
Sbjct: 177 GTLSNAGISGQAFRHGPQISNVLEMDVITGHGEMVTCSKQLNADLFDAVLGGLGQFGVIT 236

Query: 61  AVEIKIIPVKK-VRARLGCEKGF------------PVIYDKEEDRDLFHAIPWS------ 101
              I + P     R        F            P              +  S      
Sbjct: 237 RARIAVEPAPARARWVRFVYTDFAAFSADQERLTAPRPGGGGASFGPMSYVEGSVFVNQS 296

Query: 102 ----YGTLGFLTAVEIQII----PVKNIRILHHLHVPILDYYHRFSTSLFWEIQDIVPFG 153
                   GF T  ++  I      +N   ++ +   +    +  +T+    +   +   
Sbjct: 297 LATDLANTGFFTDADVARIVALAGERNATTVYSIEATL---NYDNATAAAAAVDQELASV 353

Query: 154 NHPLFRYLLGWLMPPKVALLK-LTQTQTIKN------LYDKHHVVQDYLVPIEELRSCVH 206
              L  Y+ G+     VA    L +    +       L+   H   +  VP   +     
Sbjct: 354 LGTL-SYVEGFAFQRDVAYAAFLDRVHGEEVALNKLGLWRVPHPWLNMFVPRSRIADFDR 412

Query: 207 YFHDNI-----QIYPLWICPFLL-KDLPGLVHPAKAQDGMYLDLGLYGEPKAKDYHSKNT 260
                I      + PL + P        G+     ++D  Y    L+      D      
Sbjct: 413 GVFKGILQGTDIVGPLIVYPLNKSMWDDGMSAATPSEDVFYAVSLLFSSVAPND------ 466

Query: 261 ITALESYLGKIRGFQMLGAGVYQSYS-------EFRQNYDHSLYDRVRAR 303
           +  L+    +I  F  L    Y++Y        ++ +++  + ++R    
Sbjct: 467 LARLQEQNRRILRFCDLAGIQYKTYLARHTDRSDWVRHFGAAKWNRFVEM 516
>2exr_A Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin oxidase/dehydrogenase, CKX, structura genomics, protein structure initiative; HET: MSE FAD; 1.70A {Arabidopsis thaliana} PDB: 2q4w_A* Length = 524 Back     alignment and structure
>2i0k_A Oxidoreductase; MIX alpha beta, covalent FAD, flavoenzyme; HET: FAD; 1.60A {Brevibacterium sterolicum} SCOP: d.58.32.3 d.145.1.1 PDB: 1i19_A* Length = 561 Back     alignment and structure
>2vfr_A Xylitol oxidase, alditol oxidase; FAD, sugar, polyol, flavin, flavoprotein, oxidoreductase; HET: FAD; 1.1A {Streptomyces coelicolor} PDB: 2vfs_A* 2vft_A* 2vfu_A* 2vfv_A* Length = 422 Back     alignment and structure
>4feh_A Oxidoreductase DPRE1; alpha+beta, decaprenylphosphoryl-beta-D-RIBO; HET: FAD; 2.04A {Mycobacterium tuberculosis} PDB: 4fdo_A* 4fdn_A* 4fdp_A* 4ff6_A* Length = 481 Back     alignment and structure
>2bvf_A 6-hydroxy-D-nicotine oxidase; autoflavinylation, enantiomeric substrates, flavoenzymes, NI degradation; HET: FAD; 1.92A {Arthrobacter nicotinovorans} PDB: 2bvg_A* 2bvh_A* Length = 459 Back     alignment and structure
>3js8_A Cholesterol oxidase; cholsterol, organic solvent stability, oxygen channel, FAD, flavoprotein, oxidoreductase; HET: FAD SUC; 1.54A {Chromobacterium SP} Length = 540 Back     alignment and structure
>1zr6_A Glucooligosaccharide oxidase; alpha + beta, flavoenzyme, oxidoreductase; HET: NAG FAD; 1.55A {Acremonium strictum} PDB: 2axr_A* 3e0t_A* 3hsu_A* Length = 503 Back     alignment and structure
>3rja_A Carbohydrate oxidase; protein-substrate analogue complex, FAD binding domain, BERB berberine-like domain, glucooligosaccharide oxidase; HET: FAD NAG ABL TRS; 2.10A {Microdochium nivale} PDB: 3rj8_A* Length = 473 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query317
4feh_A481 Oxidoreductase DPRE1; alpha+beta, decaprenylphosph 100.0
2vfr_A422 Xylitol oxidase, alditol oxidase; FAD, sugar, poly 99.98
2i0k_A561 Oxidoreductase; MIX alpha beta, covalent FAD, flav 99.95
3js8_A540 Cholesterol oxidase; cholsterol, organic solvent s 99.94
2exr_A524 Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin 99.83
1w1o_A534 Cytokinin dehydrogenase 1; flavin, oxidoreductase, 99.8
2bvf_A459 6-hydroxy-D-nicotine oxidase; autoflavinylation, e 99.78
3tsh_A500 Pollen allergen PHL P 4; flavoprotein, BI-covalent 99.67
4bby_A658 Alkyldihydroxyacetonephosphate synthase, peroxiso; 99.57
1zr6_A503 Glucooligosaccharide oxidase; alpha + beta, flavoe 99.51
3rja_A473 Carbohydrate oxidase; protein-substrate analogue c 99.45
3vte_A518 Tetrahydrocannabinolic acid synthase; BI-covalent 99.39
3fw9_A495 Reticuline oxidase; BI-covalent flavinylation, N-g 99.37
3pop_A501 GILR oxidase; FAD binding protein, gilvocarcin, gi 99.36
2yvs_A219 Glycolate oxidase subunit GLCE; oxidoreductase; 2. 99.3
2y3s_A530 TAML; oxidoreductase; HET: FAD TIR; 1.67A {Strepto 99.29
2ipi_A521 Aclacinomycin oxidoreductase (aknox); anthracyclin 99.28
2wdx_A523 Putative hexose oxidase; oxidoreductase-antibiotic 99.26
2uuu_A584 Alkyldihydroxyacetonephosphate synthase; transfera 99.11
3pm9_A476 Putative oxidoreductase; putative D-2-hydroxygluta 99.1
1wvf_A520 4-cresol dehydrogenase [hydroxylating] flavoprote 98.97
1e8g_A560 Vanillyl-alcohol oxidase; oxidoreductase, flavoenz 98.75
1f0x_A571 DLDH, D-lactate dehydrogenase; oxidoreductase; HET 98.62
3i99_A357 UDP-N-acetylenolpyruvoylglucosamine reductase; str 98.36
1hsk_A326 UDP-N-acetylenolpyruvoylglucosamine reductase; pep 98.2
1uxy_A340 MURB, uridine diphospho-N-acetylenolpyruvylglucosa 98.17
3tx1_A322 UDP-N-acetylenolpyruvoylglucosamine reductase; str 98.16
2gqt_A268 UDP-N-acetylenolpyruvylglucosamine reductase; pept 98.03
3pm9_A476 Putative oxidoreductase; putative D-2-hydroxygluta 95.61
3rja_A473 Carbohydrate oxidase; protein-substrate analogue c 93.42
2uuu_A584 Alkyldihydroxyacetonephosphate synthase; transfera 93.39
2y3s_A530 TAML; oxidoreductase; HET: FAD TIR; 1.67A {Strepto 93.16
2ipi_A521 Aclacinomycin oxidoreductase (aknox); anthracyclin 93.02
3pop_A501 GILR oxidase; FAD binding protein, gilvocarcin, gi 92.41
2wdx_A523 Putative hexose oxidase; oxidoreductase-antibiotic 91.73
1zr6_A503 Glucooligosaccharide oxidase; alpha + beta, flavoe 91.26
3fw9_A495 Reticuline oxidase; BI-covalent flavinylation, N-g 90.82
3vte_A518 Tetrahydrocannabinolic acid synthase; BI-covalent 90.77
1f0x_A571 DLDH, D-lactate dehydrogenase; oxidoreductase; HET 89.22
1e8g_A560 Vanillyl-alcohol oxidase; oxidoreductase, flavoenz 88.61
1wvf_A520 4-cresol dehydrogenase [hydroxylating] flavoprote 86.79
>4feh_A Oxidoreductase DPRE1; alpha+beta, decaprenylphosphoryl-beta-D-RIBO; HET: FAD; 2.04A {Mycobacterium tuberculosis} PDB: 4fdo_A* 4fdn_A* 4fdp_A* 4ff6_A* 4aut_A* 4f4q_A* 4g3t_A 4g3u_A Back     alignment and structure
Probab=100.00  E-value=3.2e-40  Score=323.56  Aligned_cols=296  Identities=16%  Similarity=0.147  Sum_probs=194.5

Q ss_pred             eccCCCCCC-cccCcccccEEEEEEEecCccEEEEcCC-CCcchhhhcccCCCCcEEEEEEEEEEEecccE---EEEE--
Q psy11597          4 LGQGLESSS-HKYGVFQNTCVSYELVLSDASLVECSEE-EDRDLFHAIPWSYGTLGFLTAVEIKIIPVKKV---RARL--   76 (317)
Q Consensus         4 ~~~g~~~~~-~~~G~~~~~V~~~~vv~~~G~~~~~s~~-~~~dLf~a~~gg~G~~Gvit~~~l~~~p~~~~---~~~~--   76 (317)
                      +++|.||.+ ++||.++|+|++++||++||++++|+++ +|+|||||++||+|++||||++||++.|.++.   ...+  
T Consensus       147 ia~~a~G~~~~~~G~~~d~V~~~evV~~dG~v~~~s~~~~~~dLf~a~rgs~G~~GIIt~~tl~l~p~~~~~~~~~~~~~  226 (481)
T 4feh_A          147 IACDIHGKNHHSAGSFGNHVRSMDLLTADGEIRHLTPTGEDAELFWATVGGNGLTGIIMRATIEMTPTSTAYFIADGDVT  226 (481)
T ss_dssp             HHTTCCCTTHHHHCCGGGGEEEEEEECTTSCEEEECSSSTTHHHHHHHTTCTTTTCEEEEEEEECEECSCSEEEEEEEEC
T ss_pred             cccccCCCCcccCCCccceEeEEEEEeCCCCEEEeCCCCCChHHHHHhhccCCCceEEEEEEEEEEeCCccEEEEEEEeC
Confidence            455566665 7999999999999999999999999998 99999999999999999999999999998763   2222  


Q ss_pred             -CCCCcccccc-----cCCCCCCeEEEEEecCCCc------ceeeccccc-----ccccccc--eeEEec-eeecccchh
Q psy11597         77 -GCEKGFPVIY-----DKEEDRDLFHAIPWSYGTL------GFLTAVEIQ-----IIPVKNI--RILHHL-HVPILDYYH  136 (317)
Q Consensus        77 -~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~------g~~~~~~~~-----~~~~~~~--~~~~~~-~~~~~~y~~  136 (317)
                       +++++++...     ..+.++.|+|++..++..+      +++++....     ..+....  ....+. ..+ ..-+.
T Consensus       227 ~~l~~~~~~~~~~~~~~~~~~~~w~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~~~p-~~~l~  305 (481)
T 4feh_A          227 ASLDETIALHSDGSEARYTYSSAWFDAISAPPKLGRAAVSRGRLATVEQLPAKLRSEPLKFDAPQLLTLPDVFP-NGLAN  305 (481)
T ss_dssp             SSHHHHHHHHSSSGGGGCSEEEEEECCSSCTTSTTCEEEEEEEECCGGGSCGGGGGSTTCCC------------------
T ss_pred             CCHHHHHHHHHHHHhcCCcEEEEEEeccCCCCCCCeEEEEeCCcCcccccccccccCccccccccccCCCccCc-HHHHh
Confidence             5555444321     1234455666665554333      222211000     0000000  000000 000 00000


Q ss_pred             cccCCceeeeee-ecccCCcceehhhccccCCchhhhhcccccccccccccCCCceE-EEeechhcHHHHHHHHHhhcc-
Q psy11597        137 RFSTSLFWEIQD-IVPFGNHPLFRYLLGWLMPPKVALLKLTQTQTIKNLYDKHHVVQ-DYLVPIEELRSCVHYFHDNIQ-  213 (317)
Q Consensus       137 r~~~~~~w~~~~-~~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~q-d~~IP~~~~~~~l~~i~~~~~-  213 (317)
                      +....+|....+ ..|. ..+.... +..+++|.+.+.+      |+++|++.+++| ||+||.+ +.+++++|++.+. 
T Consensus       306 ~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~p~d~v~~------~nr~yg~~~f~q~e~~vP~~-~~~al~~l~~~i~~  376 (481)
T 4feh_A          306 KYTFGPIGELWYRKSGT-YRGKVQN-LTQFYHPLDMFGE------WNRAYGPAGFLQYQFVIPTE-AVDEFKKIIGVIQA  376 (481)
T ss_dssp             ------------CCSCC-EEEEEEE-HHHHHC-------------CHHHHTTTSEEEEEEEEETT-CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhCcc-ccccccc-ceeeechhhhccc------cccccCCCCcEEEEEEeccc-HHHHHHHHHHHHHh
Confidence            000000000000 0000 0000000 0111234444433      458999999999 9999999 9999999998885 


Q ss_pred             -CCCeeeeeeeecC--CCCCCCCCCCCCCeeEEEeeecCCCCCCcchhHHHHHHHHHHHhcCCeeccccCCCCChHHHHH
Q psy11597        214 -IYPLWICPFLLKD--LPGLVHPAKAQDGMYLDLGLYGEPKAKDYHSKNTITALESYLGKIRGFQMLGAGVYQSYSEFRQ  290 (317)
Q Consensus       214 -~~p~~l~p~k~~~--~~~~L~~p~~~~~~~~d~~~y~~~~~~~~~~~~~~~~le~~v~~~GGr~yl~k~~~~t~~~f~~  290 (317)
                       ..++++.+.+++.  ++++||||++++++++|+     |..+  ...+++++||++++++|||+||+|+++|++++|++
T Consensus       377 ~~~~~~~~v~~R~~~~d~~~LS~~~~~~tlal~~-----~~~~--~~~~~~~~le~i~~~~gGRphw~K~~~~~~~~~~~  449 (481)
T 4feh_A          377 SGHYSFLNVFKLFGPRNQAPLSFPIPGWNICVDF-----PIKD--GLGKFVSELDRRVLEFGGRLYTAKDSRTTAETFHA  449 (481)
T ss_dssp             TTCCCSCCEEEEECCCCSCTTCCCCSEEEEEEEE-----ECCT--THHHHHHHHHHHHHHTTCEECGGGCSSCCHHHHHH
T ss_pred             cCCCceEEEEEEEeCCCCccCCCCCCceEEEEEc-----cCCc--cHHHHHHHHHHHHHHcCCEecchhccCCCHHHHHH
Confidence             3567776666664  469999999999999997     3233  47899999999999999999999999999999999


Q ss_pred             hCCc-hHHHHHHHhcCCCCCCCccccc
Q psy11597        291 NYDH-SLYDRVRARLGCEKGFPVIYDK  316 (317)
Q Consensus       291 ~Yp~-~~f~~~r~~~DP~~~f~~~~~k  316 (317)
                      +||+ ++|.++|+++||+++|.|.|.+
T Consensus       450 ~YP~~~~F~~lr~~~DP~g~F~n~~~r  476 (481)
T 4feh_A          450 MYPRVDEWISVRRKVDPLRVFASDMAR  476 (481)
T ss_dssp             HCTTHHHHHHHHHHHCTTCCBCCHHHH
T ss_pred             hCcCHHHHHHHHHhhCCccccCCHHHH
Confidence            9998 8999999999999999998754
>2vfr_A Xylitol oxidase, alditol oxidase; FAD, sugar, polyol, flavin, flavoprotein, oxidoreductase; HET: FAD; 1.1A {Streptomyces coelicolor} PDB: 2vfs_A* 2vft_A* 2vfu_A* 2vfv_A* Back     alignment and structure
>2i0k_A Oxidoreductase; MIX alpha beta, covalent FAD, flavoenzyme; HET: FAD; 1.60A {Brevibacterium sterolicum} SCOP: d.58.32.3 d.145.1.1 PDB: 1i19_A* Back     alignment and structure
>3js8_A Cholesterol oxidase; cholsterol, organic solvent stability, oxygen channel, FAD, flavoprotein, oxidoreductase; HET: FAD SUC; 1.54A {Chromobacterium SP} Back     alignment and structure
>2exr_A Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin oxidase/dehydrogenase, CKX, structura genomics, protein structure initiative; HET: MSE FAD; 1.70A {Arabidopsis thaliana} PDB: 2q4w_A* Back     alignment and structure
>1w1o_A Cytokinin dehydrogenase 1; flavin, oxidoreductase, flavoprotein, FAD; HET: NAG FAD; 1.7A {Zea mays} SCOP: d.58.32.4 d.145.1.1 PDB: 1w1q_A* 1w1r_A* 1w1s_A* 3dq0_A* 2qkn_A* 3c0p_A* 3bw7_A* 2qpm_A* 3kjm_A* Back     alignment and structure
>2bvf_A 6-hydroxy-D-nicotine oxidase; autoflavinylation, enantiomeric substrates, flavoenzymes, NI degradation; HET: FAD; 1.92A {Arthrobacter nicotinovorans} PDB: 2bvg_A* 2bvh_A* Back     alignment and structure
>3tsh_A Pollen allergen PHL P 4; flavoprotein, BI-covalent flavinylation, oxidoreductase, Glu dehydrogenase, N-glycosylation, allergy, dehydrogenase; HET: FDA; 1.90A {Phleum pratense} PDB: 3tsj_A* Back     alignment and structure
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A* Back     alignment and structure
>1zr6_A Glucooligosaccharide oxidase; alpha + beta, flavoenzyme, oxidoreductase; HET: NAG FAD; 1.55A {Acremonium strictum} PDB: 2axr_A* 3e0t_A* 3hsu_A* Back     alignment and structure
>3rja_A Carbohydrate oxidase; protein-substrate analogue complex, FAD binding domain, BERB berberine-like domain, glucooligosaccharide oxidase; HET: FAD NAG ABL TRS; 2.10A {Microdochium nivale} PDB: 3rj8_A* Back     alignment and structure
>3vte_A Tetrahydrocannabinolic acid synthase; BI-covalent flavinylation, oxidoreductase; HET: NAG FAD; 2.75A {Cannabis sativa} Back     alignment and structure
>3fw9_A Reticuline oxidase; BI-covalent flavinylation, N-glycosylation, alakloid biosynt oxidoreductase, alkaloid metabolism; HET: FAD SLX NAG MAN; 1.49A {Eschscholzia californica} PDB: 3d2h_A* 3d2d_A* 3d2j_A* 3gsy_A* 4ec3_A* 3fw8_A* 3fw7_A* 3fwa_A* Back     alignment and structure
>3pop_A GILR oxidase; FAD binding protein, gilvocarcin, gilvocarcin biosynthesis, covalently bound FAD, oxidoreductase; HET: FAD; 1.65A {Streptomyces griseoflavus} PDB: 3pqb_A* Back     alignment and structure
>2yvs_A Glycolate oxidase subunit GLCE; oxidoreductase; 2.00A {Thermus thermophilus} Back     alignment and structure
>2y3s_A TAML; oxidoreductase; HET: FAD TIR; 1.67A {Streptomyces SP} PDB: 2y3r_A* 2y08_A* 2y4g_A* Back     alignment and structure
>2ipi_A Aclacinomycin oxidoreductase (aknox); anthracycline, flavoenzyme, twinning, MAD; HET: AKY FAD; 1.65A {Streptomyces galilaeus} Back     alignment and structure
>2wdx_A Putative hexose oxidase; oxidoreductase-antibiotic complex, glycopeptide; HET: FAD GHP 3MY 3FG OMY BMA NAG N1L T55; 2.30A {Nonomuraea SP} PDB: 2wdw_A* Back     alignment and structure
>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein, lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A {Dictyostelium discoideum} PDB: 2uuv_A* Back     alignment and structure
>3pm9_A Putative oxidoreductase; putative D-2-hydroxyglutarate dehydrogenase, putative D-LACT dehydrogenase; HET: FAD; 2.57A {Rhodopseudomonas palustris} Back     alignment and structure
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A* Back     alignment and structure
>1e8g_A Vanillyl-alcohol oxidase; oxidoreductase, flavoenzyme, specificity; HET: FAD FCR; 2.1A {Penicillium simplicissimum} SCOP: d.58.32.1 d.145.1.1 PDB: 1e8f_A* 1e8h_A* 1qlt_A* 1qlu_A* 1vao_A* 1ahv_A* 1ahz_A* 1ahu_A* 2vao_A* 1w1j_A* 1dzn_A* 1w1l_A* 1e0y_A* 1w1k_A* 1w1m_A* Back     alignment and structure
>1f0x_A DLDH, D-lactate dehydrogenase; oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: d.58.32.2 d.145.1.1 Back     alignment and structure
>3i99_A UDP-N-acetylenolpyruvoylglucosamine reductase; structural genomics, center for structural of infectious diseases, csgid; HET: FAD; 2.20A {Vibrio cholerae} Back     alignment and structure
>1hsk_A UDP-N-acetylenolpyruvoylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP, flavoprotein, FAD; HET: FAD; 2.30A {Staphylococcus aureus} SCOP: d.145.1.2 d.146.1.1 Back     alignment and structure
>1uxy_A MURB, uridine diphospho-N-acetylenolpyruvylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP; HET: FAD EPU; 1.80A {Escherichia coli} SCOP: d.145.1.2 d.146.1.1 PDB: 1mbb_A* 1mbt_A* 2q85_A* 2mbr_A* Back     alignment and structure
>3tx1_A UDP-N-acetylenolpyruvoylglucosamine reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: FAD; 2.69A {Listeria monocytogenes} Back     alignment and structure
>2gqt_A UDP-N-acetylenolpyruvylglucosamine reductase; peptidoglycan biosynthesis, enolpyruvyl-UDP-N- acetylglucosamine, flavin adenine dinucleotide; HET: FAD; 1.30A {Thermus caldophilus} PDB: 2gqu_A* Back     alignment and structure
>3pm9_A Putative oxidoreductase; putative D-2-hydroxyglutarate dehydrogenase, putative D-LACT dehydrogenase; HET: FAD; 2.57A {Rhodopseudomonas palustris} Back     alignment and structure
>3rja_A Carbohydrate oxidase; protein-substrate analogue complex, FAD binding domain, BERB berberine-like domain, glucooligosaccharide oxidase; HET: FAD NAG ABL TRS; 2.10A {Microdochium nivale} PDB: 3rj8_A* Back     alignment and structure
>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein, lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A {Dictyostelium discoideum} PDB: 2uuv_A* Back     alignment and structure
>2y3s_A TAML; oxidoreductase; HET: FAD TIR; 1.67A {Streptomyces SP} PDB: 2y3r_A* 2y08_A* 2y4g_A* Back     alignment and structure
>2ipi_A Aclacinomycin oxidoreductase (aknox); anthracycline, flavoenzyme, twinning, MAD; HET: AKY FAD; 1.65A {Streptomyces galilaeus} Back     alignment and structure
>3pop_A GILR oxidase; FAD binding protein, gilvocarcin, gilvocarcin biosynthesis, covalently bound FAD, oxidoreductase; HET: FAD; 1.65A {Streptomyces griseoflavus} PDB: 3pqb_A* Back     alignment and structure
>2wdx_A Putative hexose oxidase; oxidoreductase-antibiotic complex, glycopeptide; HET: FAD GHP 3MY 3FG OMY BMA NAG N1L T55; 2.30A {Nonomuraea SP} PDB: 2wdw_A* Back     alignment and structure
>1zr6_A Glucooligosaccharide oxidase; alpha + beta, flavoenzyme, oxidoreductase; HET: NAG FAD; 1.55A {Acremonium strictum} PDB: 2axr_A* 3e0t_A* 3hsu_A* Back     alignment and structure
>3fw9_A Reticuline oxidase; BI-covalent flavinylation, N-glycosylation, alakloid biosynt oxidoreductase, alkaloid metabolism; HET: FAD SLX NAG MAN; 1.49A {Eschscholzia californica} PDB: 3d2h_A* 3d2d_A* 3d2j_A* 3gsy_A* 4ec3_A* 3fw8_A* 3fw7_A* 3fwa_A* Back     alignment and structure
>3vte_A Tetrahydrocannabinolic acid synthase; BI-covalent flavinylation, oxidoreductase; HET: NAG FAD; 2.75A {Cannabis sativa} Back     alignment and structure
>1f0x_A DLDH, D-lactate dehydrogenase; oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: d.58.32.2 d.145.1.1 Back     alignment and structure
>1e8g_A Vanillyl-alcohol oxidase; oxidoreductase, flavoenzyme, specificity; HET: FAD FCR; 2.1A {Penicillium simplicissimum} SCOP: d.58.32.1 d.145.1.1 PDB: 1e8f_A* 1e8h_A* 1qlt_A* 1qlu_A* 1vao_A* 1ahv_A* 1ahz_A* 1ahu_A* 2vao_A* 1w1j_A* 1dzn_A* 1w1l_A* 1e0y_A* 1w1k_A* 1w1m_A* Back     alignment and structure
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 317
d1w1oa2206 d.145.1.1 (A:40-245) Cytokinin dehydrogenase 1 {Ma 8e-11
d1w1oa2206 d.145.1.1 (A:40-245) Cytokinin dehydrogenase 1 {Ma 4e-05
d2i0ka2216 d.145.1.1 (A:58-273) Cholesterol oxidase {Brevibac 1e-09
>d1w1oa2 d.145.1.1 (A:40-245) Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId: 4577]} Length = 206 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: FAD-linked oxidases, N-terminal domain
domain: Cytokinin dehydrogenase 1
species: Maize (Zea mays) [TaxId: 4577]

 Score = 58.4 bits (140), Expect = 8e-11
 Identities = 14/63 (22%), Positives = 30/63 (47%)

Query: 6   QGLESSSHKYGVFQNTCVSYELVLSDASLVECSEEEDRDLFHAIPWSYGTLGFLTAVEIK 65
            G+   + ++G   +  +  +++     +V CS++ + DLF A+    G  G +T   I 
Sbjct: 143 AGISGQAFRHGPQISNVLEMDVITGHGEMVTCSKQLNADLFDAVLGGLGQFGVITRARIA 202

Query: 66  IIP 68
           + P
Sbjct: 203 VEP 205
>d1w1oa2 d.145.1.1 (A:40-245) Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId: 4577]} Length = 206 Back     information, alignment and structure
>d2i0ka2 d.145.1.1 (A:58-273) Cholesterol oxidase {Brevibacterium sterolicum [TaxId: 1702]} Length = 216 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query317
d1w1oa2206 Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId 99.67
d1w1oa1289 Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId 99.35
d2i0ka2216 Cholesterol oxidase {Brevibacterium sterolicum [Ta 99.21
d1wvfa2236 Flavoprotein subunit of p-cresol methylhydroxylase 99.16
d1e8ga2268 Vanillyl-alcohol oxidase {Fungus (Penicillium simp 99.07
d1hska1194 Uridine diphospho-N-Acetylenolpyruvylglucosamine r 97.46
d1uxya1198 Uridine diphospho-N-Acetylenolpyruvylglucosamine r 97.07
d1wvfa1279 Flavoprotein subunit of p-cresol methylhydroxylase 93.27
d1f0xa2265 D-lactate dehydrogenase {Escherichia coli [TaxId: 92.65
d1e8ga1287 Vanillyl-alcohol oxidase {Fungus (Penicillium simp 92.21
d1f0xa1294 D-lactate dehydrogenase {Escherichia coli [TaxId: 90.18
>d1w1oa2 d.145.1.1 (A:40-245) Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId: 4577]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: FAD-linked oxidases, N-terminal domain
domain: Cytokinin dehydrogenase 1
species: Maize (Zea mays) [TaxId: 4577]

Probab=99.67  E-value=1.1e-17  Score=144.24  Aligned_cols=69  Identities=22%  Similarity=0.476  Sum_probs=64.9

Q ss_pred             CceeccCCCCCCcccCcccccEEEEEEEecCccEEEEcCCCCcchhhhcccCCCCcEEEEEEEEEEEec
Q psy11597          1 GIVLGQGLESSSHKYGVFQNTCVSYELVLSDASLVECSEEEDRDLFHAIPWSYGTLGFLTAVEIKIIPV   69 (317)
Q Consensus         1 G~~~~~g~~~~~~~~G~~~~~V~~~~vv~~~G~~~~~s~~~~~dLf~a~~gg~G~~Gvit~~~l~~~p~   69 (317)
                      |+++++|.|+++.+||+.+|+|+++|+|++||++++||+.+|+|||||++||+|+|||||++|||++|+
T Consensus       138 G~i~~~g~g~~s~~~G~~~d~v~~~evV~~~G~~~~~s~~~~~dl~~a~~g~~G~~Giit~~tl~l~PA  206 (206)
T d1w1oa2         138 GTLSNAGISGQAFRHGPQISNVLEMDVITGHGEMVTCSKQLNADLFDAVLGGLGQFGVITRARIAVEPA  206 (206)
T ss_dssp             HHHTTCCCSTTHHHHCCGGGSEEEEEEEETTSCEEEEESSSSHHHHHHHTTCTTCSEEEEEEEEEEEEC
T ss_pred             eeeccccceeccccccceeeeeeEEEEEcCCCcEEEECCCCCHHHHHHHhhCCCccEeEEEEEEEEEcC
Confidence            345567888899999999999999999999999999999999999999999999999999999999996
>d1w1oa1 d.58.32.4 (A:246-534) Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId: 4577]} Back     information, alignment and structure
>d2i0ka2 d.145.1.1 (A:58-273) Cholesterol oxidase {Brevibacterium sterolicum [TaxId: 1702]} Back     information, alignment and structure
>d1wvfa2 d.145.1.1 (A:7-242) Flavoprotein subunit of p-cresol methylhydroxylase {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1e8ga2 d.145.1.1 (A:6-273) Vanillyl-alcohol oxidase {Fungus (Penicillium simplicissimum) [TaxId: 69488]} Back     information, alignment and structure
>d1hska1 d.145.1.2 (A:15-208) Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase (MurB), N-terminal domain {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1uxya1 d.145.1.2 (A:3-200) Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase (MurB), N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1wvfa1 d.58.32.1 (A:243-521) Flavoprotein subunit of p-cresol methylhydroxylase {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1f0xa2 d.145.1.1 (A:9-273) D-lactate dehydrogenase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1e8ga1 d.58.32.1 (A:274-560) Vanillyl-alcohol oxidase {Fungus (Penicillium simplicissimum) [TaxId: 69488]} Back     information, alignment and structure
>d1f0xa1 d.58.32.2 (A:274-567) D-lactate dehydrogenase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure